Citrus Sinensis ID: 014049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPHQMEI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEcccccccccccccccHHHHHHHHccccccccccccccccccEEEcccccccccccccEEEcccccEEEEcccHHHHHHHHcccccEEEEEEEccEEEEccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHcccEEEcccccEEEEEccccccEEEEEEccccEEEccEEEEccccccccccccccccHHHHHccccccccccEEEEEEEEEccccccccccEEEEEccccccccccccEEEEEEcccccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccEEcHHHHHHHHcccccccHHcccHHHccccccccccHHHcccccccEEEccccHHHHccccHHHEEEEcccEEEEEEEEEccEEEEEcccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccHHccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHccEEEccccccEEEEEccccEEEEEEEccccEEEEEEEEEccccccccccccccccccccccccccEEEccEEEEEEEEEccccccccccEEEEEccHHccccccccEEEEEEEcccccccccEEEEEEEcccccEEcc
Coil and Loop (DISEMBL)
mtgneseselpvppyppieptafDLIVIGTGLPESVISAAAsasgksvlhldpnpfygshfsslSIADLTHflnshstpssvcpdplysdveiSNYASRLLsqhprnfnldvsgprvlFCADHAVDLMLKSGASHYlefksidatfmldadaklcsvpdsraaifkdkslglmEKNQLMRFFKLVQGhlsldeseennvriseedldspFAEFLtkmklphkIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGAliypiygqgelpqaFCRRAAVKGCLYVLRMPvislltdqnsgsykgvrlasgqdilshklvldpsftvpgslasSHQQLQESFQAfslsdnkgkvargicitrsslkpdlsnflvifpprslfpeqvTSIRVLQlggnlavcplgmvsldllsplphqmei
Flexible Loop (DISEMBL)
mtgneseselpvppyppIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISlltdqnsgsYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAfslsdnkgKVARGICItrsslkpdlsnFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLdllsplphqmei
Low Complexity Region (SEG)
MTGNeseselpvppyppiepTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPHQMEI
Disordered region (IsUnstruct)
******************EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHS***SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLS******************PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV************************GKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLL*********
Disordered Region (DISOPRED)
**************YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY*****SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLAS*************LSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPL******
Disordered Region (DISEMBL)
***********VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPHQMEI
Disordered Region (DISPRO)
*******SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS**CP****S***ISNYAS***SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGS*************AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPHQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPHQMEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
Q9V8W3	511	Rab proteins geranylgeran	yes	no	0.696	0.587	0.340	2e-41
P32864	603	Rab proteins geranylgeran	yes	no	0.837	0.598	0.277	2e-30
Q9QZD5	621	Rab proteins geranylgeran	yes	no	0.645	0.447	0.312	4e-30
O93831	640	Rab proteins geranylgeran	N/A	no	0.819	0.551	0.285	6e-30
Q10305	440	Probable secretory pathwa	yes	no	0.788	0.772	0.267	1e-29
P50396	447	Rab GDP dissociation inhi	no	no	0.728	0.702	0.270	1e-28
P21856	447	Rab GDP dissociation inhi	no	no	0.728	0.702	0.270	2e-28
Q6Q7J2	445	Rab GDP dissociation inhi	yes	no	0.647	0.626	0.287	3e-28
P24386	653	Rab proteins geranylgeran	yes	no	0.642	0.424	0.302	3e-28
O97555	447	Rab GDP dissociation inhi	yes	no	0.728	0.702	0.267	4e-28

>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 26/326 (7%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P  FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P
Sbjct: 6   PEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEP 65

Query: 80  SSVCPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS 131
            S   +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS
Sbjct: 66  HSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKS 124

Query: 132 GASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSL 191
               Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F          
Sbjct: 125 NICRYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACN----- 178

Query: 192 DESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251
           D  E+     S E     F E+L   ++  KI S V+ AIAM        E       G+
Sbjct: 179 DYGEDKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GM 231

Query: 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS 311
            R   +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS
Sbjct: 232 QRTQRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNS 289

Query: 312 GSYKGVRLASGQDILSHKLVLDPSFT 337
             +  +  ++G+ + +  +V  P +T
Sbjct: 290 NEF--LLSSAGKTLRAKNVVSAPGYT 313

Binds unprenylated Rab proteins, presents it to the catalytic component B, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab to a protein acceptor.
Drosophila melanogaster (taxid: 7227)

>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1 SV=2

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/415 (27%), Positives = 186/415 (44%), Gaps = 54/415 (13%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           P P   P   D+++ GTG+ ESV++AA +  G +VLH+D N +YG   ++L++  +  ++
Sbjct: 38  PLPATTPDKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWV 97

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQ---HPRNFNLDVSGPRVLFCADHAVDLMLK 130
           N  +  S  C    Y + ++  Y S L+       R+F +D+S P++LF     + +++K
Sbjct: 98  NEVNEGSVSC----YKNAKL--YVSTLIGSGKYSSRDFGIDLS-PKILFAKSDLLSILIK 150

Query: 131 SGASHYLEFKSIDA--TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGH 188
           S    YLEF+S+    T+  D   KL    +++  IF D++L LM K  LM+F K V   
Sbjct: 151 SRVHQYLEFQSLSNFHTYENDCFEKLT---NTKQEIFTDQNLPLMTKRNLMKFIKFVLNW 207

Query: 189 LSLDESEENNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247
                  E    I +   +   ++FL  K KL       ++++I +  YD  V     K 
Sbjct: 208 -------EAQTEIWQPYAERTMSDFLGEKFKLEKPQVFELIFSIGLC-YDLNV-----KV 254

Query: 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLT 307
            + + R+  Y +S   +     AL     G GEL Q FCR AAV G  Y L   ++S   
Sbjct: 255 PEALQRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKLNEKLVSF-- 311

Query: 308 DQNSGSYKGVRLASGQDI-LSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVA 366
              + + K      G  + +S K+++ P+     S     QQ Q              V 
Sbjct: 312 ---NPTTKVATFQDGSKVEVSEKVIISPTQAPKDSKHVPQQQYQ--------------VH 354

Query: 367 RGICITRS----SLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMV 417
           R  CI  +          S  +V+FPP SL       ++   LG    +CP G +
Sbjct: 355 RLTCIVENPCTEWFNEGESAAMVVFPPGSLKSGNKEVVQAFILGAGSEICPEGTI 409

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2

 Score =  132 bits (333), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 154/314 (49%), Gaps = 36/314 (11%)

Query: 101 LSQHPRNFNLD-VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD 159
           + +  R FN+D VS P  L+     +DL++KS  S Y EFK++        + K+  VP 
Sbjct: 221 MVKESRRFNIDLVSKP--LYSQGSLIDLLIKSNVSRYAEFKNVTRILAF-WEGKVEQVPC 277

Query: 160 SRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL 219
           SRA +F  K L ++EK  LM+F      +    +  ++  + S       F+++L   KL
Sbjct: 278 SRADVFNSKELSMVEKRMLMKFLTFCLDYEQHSDEYQDFKQCS-------FSDYLKTKKL 330

Query: 220 PHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQG 279
              ++  +L++IAM       SE    T DG+     +   +GRF N     I+P+YG G
Sbjct: 331 TPNLQHFILHSIAM------TSESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHG 382

Query: 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP 339
           E+PQ FCR  AV G +Y LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P
Sbjct: 383 EIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LP 441

Query: 340 GSLASSHQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVT 398
               S+ Q  Q              ++R + IT +S LK D    + I     L P   T
Sbjct: 442 KETCSNVQYKQ--------------ISRAVLITDQSILKTDSDQQISILVVPPLEP-GTT 486

Query: 399 SIRVLQLGGNLAVC 412
           S+RV++L  +   C
Sbjct: 487 SVRVMELCSSTMTC 500

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Less effective than REP-1 in supporting prenylation of Rab3 family.

Mus musculus (taxid: 10090)

>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 196/407 (48%), Gaps = 54/407 (13%)

Query: 24  DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF---LNSHSTPS 80
           D+++IGTGL ES+++AA S  G  VLH+D N +YG   S+L+I  L  +   +NS     
Sbjct: 5   DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQ 64

Query: 81  SVCPDPLYSDVEISNYASRLLSQHP-RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                  + D +I     +  +Q+  +++ +D++ P+++FC    + L++KS    YLEF
Sbjct: 65  -------FQDAQIYIPGGKQSNQYTSKDYGIDLT-PKIMFCQSDLLSLLIKSRVYRYLEF 116

Query: 140 KSIDATFMLDADAKLCSV-PDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENN 198
           +S+    + + D     V   ++  IF DKSL LM K    R+       L LD   +  
Sbjct: 117 QSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTK----RYLMKFLKFLLLDPDYKQR 172

Query: 199 VRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257
           V+      D+P   FL +  KL     + ++Y+I ++ Y ++ S     T+  + R+  +
Sbjct: 173 VKPY---ADTPIQVFLQQEFKLEEPQINELVYSIGLS-YKEQTS-----TKQALIRMKRF 223

Query: 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV-----ISLLTDQNSG 312
            SS   +      ++    G GEL Q FCR AAV G  Y L   +     IS +   N G
Sbjct: 224 LSSFDVY-GKFPCMVSKFGGPGELSQGFCRSAAVAGTTYKLNTNLTDFDPISKIAHFNDG 282

Query: 313 SYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICIT 372
           S+  +         + K+++ P+  +P  L SS+ ++ E+ Q +        V R + + 
Sbjct: 283 SHIKI---------NEKIIISPT-QLPKFLQSSYNKVVENLQPYY-------VTRLVTVV 325

Query: 373 RSSLKPDL----SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
           R   K  +    S+ +V+FPP SL  +   S++V+   GN  VCP G
Sbjct: 326 RRDCKEWMSGNESSAIVVFPPHSLPTDNQHSVQVIIQNGNSGVCPDG 372

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.

Candida albicans (taxid: 5476)

>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gdi1 PE=3 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 183/396 (46%), Gaps = 56/396 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E V+S   S  GK VLH+D N +YG+  +SL++  L         P   
Sbjct: 5   YDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFR----PGEQ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  D               R++ +D+  P+ L       ++++ +  + Y+EFK I
Sbjct: 61  RPESLGRD---------------RDWCVDLV-PKFLMANGDLTNILIYTDVTRYIEFKQI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
             +++   D ++  VP +     K   + L EK +  +F + V  +   D S   ++ I 
Sbjct: 105 AGSYVY-RDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINID 163

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
            + ++S F +F     L    +  + +A+A+   D  + +   +TR+   R+ LY SSI 
Sbjct: 164 RDSMESVFKKF----GLQSGTQDFIGHAMALYLDDAYLKKPARETRE---RILLYASSIA 216

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           +F  +    IYP+YG GELPQ F R +A+ G  Y+L  PV  ++   + G   GVR  SG
Sbjct: 217 KFGKS--PYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYG-DDGVAIGVR--SG 271

Query: 323 QDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL--KPD 379
             +   K ++ DPS+             +E  ++       G++ R ICI    +    +
Sbjct: 272 DQVAKAKQIIGDPSY------------FREKVRSV------GRLVRAICILNHPIPNTDN 313

Query: 380 LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
           L +  +I P   +  ++   I +  +     VCP G
Sbjct: 314 LDSVQIIIPQNQV--KRKHDIYIAGISSVHNVCPKG 347

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   +I       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQILEGPPESMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVQKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1

 Score =  126 bits (317), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 152/317 (47%), Gaps = 38/317 (11%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   +S++ + DL    N    P +
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPA 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V ++L +  + YL+FK 
Sbjct: 65  SM-------------------GRGRDWNVDLI-PKFLMANGQLVKMLLFTEVTRYLDFKV 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
            + +F+     K+  VP + A       +GL EK +  +F   V         +EN+ R 
Sbjct: 105 TEGSFVYKG-GKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANF------DENDPRT 157

Query: 202 SE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            E  +   +   E   K  L   +     +A+A+   D  + +   +T   INR+ LY+ 
Sbjct: 158 FEGVDPKKTAMREVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCET---INRIKLYSE 214

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  ++  QN G   GV+ 
Sbjct: 215 SLARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIV-QN-GKVIGVK- 269

Query: 320 ASGQDILSHKLVLDPSF 336
           + G+     +L+ DPS+
Sbjct: 270 SEGEIARCKQLICDPSY 286

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Sus scrofa (taxid: 9823)

>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 148/311 (47%), Gaps = 34/311 (10%)

Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        + ++  VP SRA +F
Sbjct: 225 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGRVEQVPCSRADVF 282

Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    +  +    I+       F E+L   KL   ++ 
Sbjct: 283 NSKQLTMVEKRMLMKFLTFCMEYEKYPDEYKGYEEIT-------FYEYLKTQKLTPNLQY 335

Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
           IV+++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 336 IVMHSIAM------TSETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCF 387

Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S 
Sbjct: 388 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSR 446

Query: 346 HQQLQESFQAFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
            Q  Q              ++R + IT RS LK D    + I    +  P    ++RV++
Sbjct: 447 VQYRQ--------------ISRAVLITDRSVLKTDSDQQISILTVPAEEP-GTFAVRVIE 491

Query: 405 LGGNLAVCPLG 415
           L  +   C  G
Sbjct: 492 LCSSTMTCMKG 502

Binds unprenylated Rab proteins, presents it to the catalytic Rab GGTase dimer, and remains bound to it after the geranylgeranyl transfer reaction. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane. Also a pre-formed complex consisting of CHM and the Rab GGTase dimer (RGGT or component B) can bind to and prenylate Rab proteins; this alternative pathway is proposed to be the predominant pathway for Rab protein geranylgeranylation.

Homo sapiens (taxid: 9606)

>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 56/370 (15%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPEAMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFIYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158

Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +   +   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQSTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ +P  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-IPDRVRKA-----------------GQVIRIICILSHPIKNTN 312

Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
224113201	553	predicted protein [Populus trichocarpa]	0.948	0.739	0.664	1e-157
359476981	556	PREDICTED: rab proteins geranylgeranyltr	0.948	0.735	0.658	1e-154
255561411	551	protein with unknown function [Ricinus c	0.941	0.736	0.644	1e-148
147798203	812	hypothetical protein VITISV_019372 [Viti	0.948	0.503	0.569	1e-142
356496561	553	PREDICTED: rab proteins geranylgeranyltr	0.935	0.728	0.620	1e-140
449456881	543	PREDICTED: rab proteins geranylgeranyltr	0.916	0.727	0.608	1e-140
20453227	563	AT3g06540/F5E6_13 [Arabidopsis thaliana]	0.944	0.722	0.6	1e-140
22330883	563	Rab escort protein [Arabidopsis thaliana	0.944	0.722	0.6	1e-139
356538383	551	PREDICTED: rab proteins geranylgeranyltr	0.921	0.720	0.617	1e-139
357484143	552	Rab proteins geranylgeranyltransferase c	0.914	0.713	0.598	1e-139

>gi|224113201|ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|222832862|gb|EEE71339.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 287/432 (66%), Positives = 341/432 (78%), Gaps = 23/432 (5%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           PPYP IEPT FDLI +GTGL E +++AAASASGK+VLHLD NPFYGSH+SSLS+ +LT F
Sbjct: 5   PPYPQIEPTTFDLIAVGTGLAECIVAAAASASGKTVLHLDTNPFYGSHYSSLSVPELTSF 64

Query: 73  LNSHSTPSSV---------CPD---------PLYSDVEISNYASRLLSQHPRNFNLDVSG 114
           L S+ST SS           PD         P+YSDVEIS +   L+ ++ R FNLD+ G
Sbjct: 65  LISNSTASSPPSSTSTTTDIPDYSIVNLITQPVYSDVEISCFYPELIEENLRKFNLDLCG 124

Query: 115 PRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLME 174
           PRVLFCAD ++DLMLKSGAS+Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LME
Sbjct: 125 PRVLFCADKSIDLMLKSGASNYVEFKSIDASFVGDGNGKLWNVPDSRAAIFKDKSLTLME 184

Query: 175 KNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           KNQLMRFFKLVQGHL  ++       ++IS+EDL  PF E+L+KM+LP KI+SI+LYAIA
Sbjct: 185 KNQLMRFFKLVQGHLVATVGAGTSGKMKISDEDLQRPFVEYLSKMRLPPKIRSIILYAIA 244

Query: 233 MADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA 289
           MADYDQ+   V + +LKT+DGI+RLALY SS+GRF NA GALIYPIYGQGELPQAF RR+
Sbjct: 245 MADYDQDDMGVCQNLLKTKDGIDRLALYQSSVGRFTNASGALIYPIYGQGELPQAFSRRS 304

Query: 290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL 349
           AVKGC++VLRMPV +LL +++SGSYKGVRLASGQDI S KLVLDPSFT+    AS    L
Sbjct: 305 AVKGCIHVLRMPVTALLMEKDSGSYKGVRLASGQDIFSQKLVLDPSFTLASPSASPSDLL 364

Query: 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNL 409
            ESF   S  D KGKVARGICITR+SLKPD+SN LV++PPRSL+PEQ+TSIR LQ+ GNL
Sbjct: 365 HESFNFLSTRDVKGKVARGICITRNSLKPDMSNLLVVYPPRSLYPEQITSIRALQISGNL 424

Query: 410 AVCPLGMVSLDL 421
           AVCPLGM  L L
Sbjct: 425 AVCPLGMFVLYL 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476981|ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransferase component A 2-like [Vitis vinifera] gi|296088658|emb|CBI37649.3| unnamed protein product [Vitis vinifera]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/436 (65%), Positives = 339/436 (77%), Gaps = 27/436 (6%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  + +H R FNLD
Sbjct: 64  FLTSQSAVHSSHPNPPSSVAADAAEYVALDLKTRPMYSDVEITSHSSDPV-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY 229
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS++LY
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSMILY 242

Query: 230 AIAMADYDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFC 286
           AIAMADYDQ   EV + VL T+ GI+RLALY+SS+GRF NALGALIYPIYGQGEL QAFC
Sbjct: 243 AIAMADYDQDSIEVCKDVLDTKIGIDRLALYHSSVGRFPNALGALIYPIYGQGELTQAFC 302

Query: 287 RRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSH 346
           RRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP  +A S 
Sbjct: 303 RRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPVPVAPSQ 362

Query: 347 QQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL 405
              + ES Q  +L D K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +IR +Q+
Sbjct: 363 PDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMAIRAVQI 422

Query: 406 GGNLAVCPLGMVSLDL 421
           G NL VCP GM  L L
Sbjct: 423 GSNLGVCPSGMFVLYL 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561411|ref|XP_002521716.1| protein with unknown function [Ricinus communis] gi|223539107|gb|EEF40703.1| protein with unknown function [Ricinus communis]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 279/433 (64%), Positives = 340/433 (78%), Gaps = 27/433 (6%)

Query: 13  PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHF 72
           P YP I+PT FDLI+IGTGL ES+I+AAASASGKSVLH+D N FYGSHFSSLSI DLT F
Sbjct: 5   PSYPSIDPTTFDLILIGTGLSESIIAAAASASGKSVLHIDQNKFYGSHFSSLSIPDLTSF 64

Query: 73  LNSHS----------------TPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPR 116
           LNS+S                T  ++    LYS+VEIS++++ L+ Q+   F+LD+SGPR
Sbjct: 65  LNSNSVPTPSPPPPQTPHPDFTVVNLTTQSLYSNVEISSFSNELIEQNCSKFSLDISGPR 124

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
           VL+CAD+++DLM+K+GA+ Y+EFKSIDA+F+ D + KL +VPDSRAAIFKDKSL LMEKN
Sbjct: 125 VLYCADNSIDLMIKTGANQYVEFKSIDASFVGDENGKLWNVPDSRAAIFKDKSLSLMEKN 184

Query: 177 QLMRFFKLVQGHLSLDESEEN----NVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIA 232
           +LMRFFKLVQ  ++ +E++E     +VRISE+DL+SPF +FL KMKL  KIKSI+LYAI 
Sbjct: 185 RLMRFFKLVQSQIATNENQEQQEEEDVRISEQDLESPFVDFLNKMKLSSKIKSIILYAIV 244

Query: 233 MADYDQE----VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRR 288
           MAD DQE     ++ +LKT+DGI+RLALY SSIGRF NALGA IYPIYGQGELP AFCRR
Sbjct: 245 MADCDQENTGGANKDLLKTKDGIDRLALYQSSIGRFTNALGAFIYPIYGQGELPPAFCRR 304

Query: 289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQ 348
           AAVKGC+YVLRMPV++LL D+N+G+YKG+RLASGQ+I S KLVLDPSFTVP   +S    
Sbjct: 305 AAVKGCIYVLRMPVVALLMDKNNGNYKGIRLASGQEIYSQKLVLDPSFTVP---SSPSDP 361

Query: 349 LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGN 408
           L ESF   S+ D K KVAR ICIT+ SLKPD SNFL ++PPRSL+PEQ TSIR LQ+GG+
Sbjct: 362 LHESFCFLSVRDVKQKVARAICITKCSLKPDTSNFLAVYPPRSLYPEQSTSIRALQMGGS 421

Query: 409 LAVCPLGMVSLDL 421
           LAVCP  M  L L
Sbjct: 422 LAVCPTNMFILYL 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798203|emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 286/502 (56%), Positives = 338/502 (67%), Gaps = 93/502 (18%)

Query: 12  VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTH 71
            P YPPIEPT FDLIV+GTGLP+SVI+AAAS++GKSVLHLD N FYGSHFSSL++ + + 
Sbjct: 4   TPSYPPIEPTDFDLIVVGTGLPQSVIAAAASSAGKSVLHLDSNSFYGSHFSSLNLDEFSS 63

Query: 72  FLNSHST--------PSSVCPD------------PLYSDVEISNYASRLLSQHPRNFNLD 111
           FL S S         PSSV  D            P+YSDVEI++++S  L +H R FNLD
Sbjct: 64  FLTSQSAVYSSHPNPPSSVTADAAEYVALDLKTRPMYSDVEITSHSSDPL-EHSRKFNLD 122

Query: 112 VSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLG 171
           VSGPRVLFCAD AVDLMLKSGAS YLEFKSIDA+F+ DAD +  +VPDSRAAIFKD+SL 
Sbjct: 123 VSGPRVLFCADAAVDLMLKSGASQYLEFKSIDASFVCDADGRFSTVPDSRAAIFKDRSLS 182

Query: 172 LMEKNQLMRFFKLVQGHLSLDESEEN--NVRISEEDLDSPFAEFLTKMKLPHKIKS---- 225
           L EKNQLMRFFKL+QGHL+  +  EN  N RISE+DL+SPF EFL KM+LP KIKS    
Sbjct: 183 LTEKNQLMRFFKLIQGHLAASDEAENDSNARISEDDLESPFVEFLNKMRLPPKIKSYRSH 242

Query: 226 ----------------------------IVLYAIAMADYDQ---EVSEYVLKTRDGINRL 254
                                       ++LYAIAMADYDQ   EV + VL T+ GI+RL
Sbjct: 243 RPSLSFYANSLLGMYKMQLKTMRDVSLKMILYAIAMADYDQDSIEVCKDVLDTKIGIDRL 302

Query: 255 ALYNSSIG----------------------------------RFQNALGALIYPIYGQGE 280
           ALY+SS+G                                  +F NALGALIYPIYGQGE
Sbjct: 303 ALYHSSVGSQGRRQVCVDVGFDXGGFFGLIFKVHLYKSQNIRKFPNALGALIYPIYGQGE 362

Query: 281 LPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPG 340
           L QAFCRRAAVKGC+YVLRMPVI+LL ++ SG  KGVRLASGQDI S KL++DPSF VP 
Sbjct: 363 LTQAFCRRAAVKGCIYVLRMPVIALLMEKESGHCKGVRLASGQDIFSQKLLVDPSFIVPV 422

Query: 341 SLASSHQQ-LQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399
            +A S    + ES Q  +L   K KVARGICI +SSLKPD+SNF+ ++PPRSL+PEQ  +
Sbjct: 423 PVAPSQPDCMPESSQVINLVYAKQKVARGICIMKSSLKPDVSNFVFVYPPRSLYPEQAMA 482

Query: 400 IRVLQLGGNLAVCPLGMVSLDL 421
           IR +Q+G NL VCP GM  L L
Sbjct: 483 IRAVQIGSNLGVCPSGMFVLYL 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496561|ref|XP_003517135.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 266/429 (62%), Positives = 323/429 (75%), Gaps = 26/429 (6%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L 
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLT 69

Query: 75  S-HSTPS----------------SVCPDPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPR 116
           S HS PS                 +   PL +D E + Y  S  LS++ R FN+D+ GPR
Sbjct: 70  SPHSLPSAATAAASSDSDDIVVVDLVHQPLCTDAETATYDESAFLSENSRKFNIDLGGPR 129

Query: 117 VLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176
            LFCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR AIF+DK L L EKN
Sbjct: 130 ALFCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGAIFRDKKLSLKEKN 189

Query: 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY 236
           QLMRFFKLVQ HL  D+++E   +I +EDL+ PF  FL KMKLP KIKSI+LYAIAM DY
Sbjct: 190 QLMRFFKLVQQHL--DDTQEE--KIPKEDLEIPFVSFLEKMKLPPKIKSILLYAIAMLDY 245

Query: 237 DQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG 293
           DQ   EV E +LKT+DGI+ LA Y+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKG
Sbjct: 246 DQDNNEVCEELLKTKDGIDCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKG 305

Query: 294 CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QES 352
           C+YVLRMPV+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSFT+P  L+ S      E 
Sbjct: 306 CIYVLRMPVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSLGDFPSER 365

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D KG VARGICITRSS+KPD+S+  V++PPRSL+PEQVTSI+ LQ+G NLAVC
Sbjct: 366 LQMLSQRDIKGMVARGICITRSSIKPDVSSCSVVYPPRSLYPEQVTSIKALQIGSNLAVC 425

Query: 413 PLGMVSLDL 421
           P G   L L
Sbjct: 426 PAGTFILYL 434

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456881|ref|XP_004146177.1| PREDICTED: rab proteins geranylgeranyltransferase component A 1-like [Cucumis sativus]

 Score =  503 bits (1296), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/424 (60%), Positives = 323/424 (76%), Gaps = 29/424 (6%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           +P I+P+ FDLIV+GTGLP+S+++AAASASGK+VLHLDPNP+YG HF++L + DLT FLN
Sbjct: 7   HPLIDPSTFDLIVVGTGLPQSILAAAASASGKTVLHLDPNPYYGGHFATLPLHDLTSFLN 66

Query: 75  SHSTPSSVCPDP-------------------LYSDVEISNYASRLLSQHPRNFNLDVSGP 115
           S S P  + P P                   LYSDVEIS+YA  +L +H R FN+D++GP
Sbjct: 67  SASAP--LLPSPPLASYDNQDYVSVDLQTRSLYSDVEISSYAPEVLQEHARKFNIDLAGP 124

Query: 116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
           RVLFCAD  +D +LK G + YLEFKSIDA+++ D + KL +VP SRAAIFKDKSL L EK
Sbjct: 125 RVLFCADKCIDAVLKVGVNQYLEFKSIDASYLWDQNGKLVNVPGSRAAIFKDKSLSLTEK 184

Query: 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
           NQLMRFFKLVQ HL   E  E++ +IS+EDLD+PF++FL K++LP K+KSI+LYAI+MAD
Sbjct: 185 NQLMRFFKLVQKHLDPAEDGESS-KISQEDLDTPFSDFLNKLRLPQKMKSIILYAISMAD 243

Query: 236 YDQ---EVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK 292
            DQ   ++ +  L T++GI RLALY++SIGRFQNA GAL+YPIYGQGEL QAFCRRAAVK
Sbjct: 244 SDQNDNDIGQNRLLTKEGIARLALYHTSIGRFQNAQGALLYPIYGQGELSQAFCRRAAVK 303

Query: 293 GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQES 352
           GCLYVLRMPV++LL D+++  YKGVRLASGQDI S +LVLDP F VP     S     ES
Sbjct: 304 GCLYVLRMPVVALLKDKSNEQYKGVRLASGQDIFSQQLVLDPCFIVPQLFKLS----LES 359

Query: 353 FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
            Q  S  D   KVARGICIT+ S+  D+ N L+++PP++LFPEQV+S+RVLQ+GGNLAVC
Sbjct: 360 LQDVSSRDVNRKVARGICITKHSIVSDVKNCLLVYPPKTLFPEQVSSVRVLQIGGNLAVC 419

Query: 413 PLGM 416
           P  M
Sbjct: 420 PEDM 423

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20453227|gb|AAM19852.1| AT3g06540/F5E6_13 [Arabidopsis thaliana] gi|23463085|gb|AAN33212.1| At3g06540/F5E6_13 [Arabidopsis thaliana]

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/435 (60%), Positives = 337/435 (77%), Gaps = 28/435 (6%)

Query: 10  LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL 69
           + +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DL
Sbjct: 2   IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61

Query: 70  THFLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFN 109
           T FL+S+S                        +    LYS VEIS++ S +L +H R FN
Sbjct: 62  TSFLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFN 121

Query: 110 LDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKS 169
           +D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKS
Sbjct: 122 VDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKS 181

Query: 170 LGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIV 227
           L L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+
Sbjct: 182 LTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSII 241

Query: 228 LYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQA 284
           LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQA
Sbjct: 242 LYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQA 301

Query: 285 FCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLA 343
           FCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+
Sbjct: 302 FCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLS 361

Query: 344 SSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIR 401
           S   Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+SLFPEQ+T+IR
Sbjct: 362 SLTDQQNETLNVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPKSLFPEQLTAIR 421

Query: 402 VLQLGGNLAVCPLGM 416
           VLQLG  LAVCP  M
Sbjct: 422 VLQLGSGLAVCPADM 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330883|ref|NP_187306.2| Rab escort protein [Arabidopsis thaliana] gi|51317418|gb|AAN03631.2|AF409086_1 Rab escort protein [Arabidopsis thaliana] gi|332640889|gb|AEE74410.1| Rab escort protein [Arabidopsis thaliana]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 261/435 (60%), Positives = 337/435 (77%), Gaps = 28/435 (6%)

Query: 10  LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL 69
           + +PPYPP++P+ +DLIV+GTG+ ESV++AAAS+SG SVLHLDPNPFYGSHF+SLS+ DL
Sbjct: 2   IDIPPYPPLDPSNYDLIVVGTGVSESVLAAAASSSGSSVLHLDPNPFYGSHFASLSLPDL 61

Query: 70  THFLNSHSTPS--------------------SVCPDPLYSDVEISNYASRLLSQHPRNFN 109
           T FL+S+S                        +    LYS VEIS++ S +L +H R FN
Sbjct: 62  TSFLHSNSVSPPPSPSSPPLPPSNNHDFISVDLVNRSLYSSVEISSFESEILEEHSRRFN 121

Query: 110 LDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKS 169
           +D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F+ D+  +L +VPDSRAAIFKDKS
Sbjct: 122 VDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASFVGDSSGELRNVPDSRAAIFKDKS 181

Query: 170 LGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIV 227
           L L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEED++SPF +FL+KM+LP KIKSI+
Sbjct: 182 LTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEEDMESPFVDFLSKMRLPPKIKSII 241

Query: 228 LYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQA 284
           LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+GRF NALGALIYPIYGQGELPQA
Sbjct: 242 LYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSMGRFSNALGALIYPIYGQGELPQA 301

Query: 285 FCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP-GSLA 343
           FCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLASGQ+I S KL+LDP  TV   SL+
Sbjct: 302 FCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLASGQEIFSQKLILDPCVTVGLESLS 361

Query: 344 SSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIR 401
           S   Q  E+          NK K+ARG+C+ R S+K ++SN LV++PP+SLFPEQ+T+IR
Sbjct: 362 SLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKANVSNALVVYPPKSLFPEQLTAIR 421

Query: 402 VLQLGGNLAVCPLGM 416
           VLQLG  LAVCP  M
Sbjct: 422 VLQLGSGLAVCPADM 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538383|ref|XP_003537683.1| PREDICTED: rab proteins geranylgeranyltransferase component A-like [Glycine max]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 260/421 (61%), Positives = 322/421 (76%), Gaps = 24/421 (5%)

Query: 15  YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLN 74
           YPPI+P  FDLI++GT L ESVI+AAASA GK++LHLDPN FYGSHF+SLS+ DLT +L+
Sbjct: 10  YPPIDPVNFDLIIVGTALSESVIAAAASAVGKTILHLDPNSFYGSHFASLSLHDLTSYLS 69

Query: 75  S-HSTPSSVCP--------------DPLYSDVEISNY-ASRLLSQHPRNFNLDVSGPRVL 118
           S HS PS+                  PL SD EI+ Y  S  LS++ R F++D+ GP+ L
Sbjct: 70  SPHSLPSAAATTTDSDDVVVIDFVQQPLCSDAEIATYDESAFLSENSRKFSIDLGGPKAL 129

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
           FCAD  +DL++KSGA+ YLEFK ID +F+ +A+A L +VPDSR +IF+DK L L EKNQL
Sbjct: 130 FCADKTIDLLMKSGAAQYLEFKGIDESFVYEANAGLANVPDSRGSIFRDKKLSLKEKNQL 189

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQ 238
           MRFFKLVQ HL  D+++E   +I EEDL+  F  FL KMKLP KIKSI+LYAIAM DYDQ
Sbjct: 190 MRFFKLVQQHL--DDTQEE--KIPEEDLEIAFVSFLEKMKLPPKIKSILLYAIAMLDYDQ 245

Query: 239 EVSEY---VLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
           + +E    +LKT+DGI+ LALY+SS+GRF NA GAL+YPIYG+GELPQAFCRRAAVKGC+
Sbjct: 246 DNNEVCIELLKTKDGIDSLALYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCI 305

Query: 296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQL-QESFQ 354
           YVLRM V+SLL D+ +GSYKGVRLASGQD+ SH+L+LDPSF +P  L+SS +    E  Q
Sbjct: 306 YVLRMSVVSLLMDKVTGSYKGVRLASGQDLYSHQLILDPSFMIPSPLSSSPRDFPSEKLQ 365

Query: 355 AFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                D KG VARGICITRSS+KPD+SN  V++PPRSL+PEQ+TSI+ LQ+G NLAVCP 
Sbjct: 366 MLGQRDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPEQLTSIKALQIGSNLAVCPA 425

Query: 415 G 415
           G
Sbjct: 426 G 426

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357484143|ref|XP_003612358.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula] gi|355513693|gb|AES95316.1| Rab proteins geranylgeranyltransferase component A [Medicago truncatula]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 253/423 (59%), Positives = 318/423 (75%), Gaps = 29/423 (6%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
           PYPPI+P  FDLI++GTGL ES+ISAAASA GK++LHLDPNPFYGSHF+SLS  DL   L
Sbjct: 9   PYPPIDPINFDLIIVGTGLSESIISAAASAVGKTILHLDPNPFYGSHFASLSFEDLISHL 68

Query: 74  NS----------------HSTPSSVCPDPLYSDVEISN----YASRLLSQHPRNFNLDVS 113
           NS                  T  ++    ++SD E ++      S+ L ++ R FNLD++
Sbjct: 69  NSPPKYITATATATTDNSDYTTVNLIQQTIFSDAEFNSCNSIEESQFLRENSRKFNLDLA 128

Query: 114 GPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM 173
           GPR LF AD  +DL+LKSGA+ YLEFK IDA+ + + +  L +VPDSR AIF+DK+L L 
Sbjct: 129 GPRALFSADKTIDLLLKSGAAQYLEFKGIDASLVYNTNEGLVNVPDSRGAIFRDKNLSLK 188

Query: 174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAM 233
           EKNQLM+FFKLVQ HL  +E E    +ISEED++S F  +L K+ LP KIK+I+LYAIAM
Sbjct: 189 EKNQLMKFFKLVQQHLGGNEDE----KISEEDMESSFVSYLEKLGLPSKIKAILLYAIAM 244

Query: 234 ADYDQE---VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA 290
            D+DQE   V + +LKT+DGI+RLA Y+SS+GR+ NA GAL+YPIYG+GELPQAFCRRAA
Sbjct: 245 VDFDQENGGVCKDLLKTKDGIDRLAQYSSSVGRYPNAPGALLYPIYGEGELPQAFCRRAA 304

Query: 291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQ 350
           VKGC+YVLRMPVISLL D+ +GSYKGVRL+SGQD+ SHKL+LDPSFT+P + + S +   
Sbjct: 305 VKGCIYVLRMPVISLLIDKVTGSYKGVRLSSGQDLYSHKLILDPSFTIPSTPSLSPKDF- 363

Query: 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLA 410
            S Q  S  D KG VARGICITRSS+KPD+SN  V++PPRSL+P+QVTS+R LQ+G NLA
Sbjct: 364 -SLQMLSHVDIKGMVARGICITRSSIKPDVSNCSVVYPPRSLYPDQVTSVRALQIGSNLA 422

Query: 411 VCP 413
           VCP
Sbjct: 423 VCP 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2084289	563	REP "AT3G06540" [Arabidopsis t	0.765	0.586	0.633	2e-132
MGI|MGI:101913	621	Chml "choroideremia-like" [Mus	0.605	0.420	0.312	1.5e-39
FB|FBgn0026378	511	Rep "Rab escort protein" [Dros	0.689	0.581	0.337	1.6e-38
DICTYBASE|DDB_G0280143	661	DDB_G0280143 "Rab escort prote	0.691	0.450	0.283	3.1e-37
UNIPROTKB|P24386	653	CHM "Rab proteins geranylgeran	0.621	0.410	0.305	3.9e-37
UNIPROTKB|E2RKG1	652	CHM "Uncharacterized protein"	0.619	0.409	0.314	2.6e-36
MGI|MGI:892979	665	Chm "choroidermia" [Mus muscul	0.638	0.413	0.304	8.5e-36
UNIPROTKB|K7GR66	653	CHM "Uncharacterized protein"	0.475	0.313	0.330	1.6e-35
UNIPROTKB|P26374	656	CHML "Rab proteins geranylgera	0.610	0.400	0.3	4e-34
UNIPROTKB|F1N2I0	651	CHML "Uncharacterized protein"	0.610	0.403	0.293	4.5e-34

TAIR|locus:2084289 REP "AT3G06540" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
 Identities = 214/338 (63%), Positives = 274/338 (81%)

Query:    87 LYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATF 146
             LYS VEIS++ S +L +H R FN+D++GPRV+FCAD +++LMLKSGA++Y+EFKSIDA+F
Sbjct:    99 LYSSVEISSFESEILEEHSRRFNVDLAGPRVVFCADESINLMLKSGANNYVEFKSIDASF 158

Query:   147 MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHL--SLDESEENNVRISEE 204
             + D+  +L +VPDSRAAIFKDKSL L+EKNQLM+FFKLVQ HL  S ++ +   V+ISEE
Sbjct:   159 VGDSSGELRNVPDSRAAIFKDKSLTLLEKNQLMKFFKLVQSHLASSTEKDDSTTVKISEE 218

Query:   205 DLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSE---YVLKTRDGINRLALYNSSI 261
             D++SPF +FL+KM+LP KIKSI+LYAIAM DYDQ+ +E   ++LKT++GI+RLALY +S+
Sbjct:   219 DMESPFVDFLSKMRLPPKIKSIILYAIAMLDYDQDNTETCRHLLKTKEGIDRLALYITSM 278

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
             GRF NALGALIYPIYGQGELPQAFCRRAAVKGC+YVLRMP+ +LL D+ +G YKGVRLAS
Sbjct:   279 GRFSNALGALIYPIYGQGELPQAFCRRAAVKGCIYVLRMPITALLLDKETGGYKGVRLAS 338

Query:   322 GQDILSHKLVLDPSFTVP-GSLASSHQQLQESFQAFSLSD--NKGKVARGICITRSSLKP 378
             GQ+I S KL+LDP  TV   SL+S   Q  E+          NK K+ARG+C+ R S+K 
Sbjct:   339 GQEIFSQKLILDPCVTVGLESLSSLTDQQNETLSVLVPKSMINKEKIARGVCVIRGSVKA 398

Query:   379 DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
             ++SN LV++PP+SLFPEQ+T+IRVLQLG  LAVCP  M
Sbjct:   399 NVSNALVVYPPKSLFPEQLTAIRVLQLGSGLAVCPADM 436

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:2000541 "positive regulation of protein geranylgeranylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:101913 Chml "choroideremia-like" [Mus musculus (taxid:10090)]

 Score = 306 (112.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 93/298 (31%), Positives = 149/298 (50%)

Query:   118 LFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177
             L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK  
Sbjct:   237 LYSQGSLIDLLIKSNVSRYAEFKNV-TRILAFWEGKVEQVPCSRADVFNSKELSMVEKRM 295

Query:   178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYD 237
             LM+F         LD  + ++    ++     F+++L   KL   ++  +L++IAM    
Sbjct:   296 LMKFLTFC-----LDYEQHSDEY--QDFKQCSFSDYLKTKKLTPNLQHFILHSIAMT--- 345

Query:   238 QEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYV 297
                SE    T DG+     +   +GRF N     I+P+YG GE+PQ FCR  AV G +Y 
Sbjct:   346 ---SESSCTTLDGLQATKNFLQCLGRFGNT--PFIFPLYGHGEIPQCFCRMCAVFGGVYC 400

Query:   298 LRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFS 357
             LR  V  L+ D++SG  KG+  A GQ I ++  +++ S+ +P    S+ Q  Q       
Sbjct:   401 LRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSY-LPKETCSNVQYKQ------- 452

Query:   358 LSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
                    ++R + IT +S LK D      +++ PP  L P   TS+RV++L  +   C
Sbjct:   453 -------ISRAVLITDQSILKTDSDQQISILVVPP--LEPG-TTSVRVMELCSSTMTC 500

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

FB|FBgn0026378 Rep "Rab escort protein" [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 109/323 (33%), Positives = 167/323 (51%)

Query:    23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
             FDL+VIGTG  ES I+AA S  GKSVLHLD N +YG  +SS S+  L   L+    P S 
Sbjct:     9 FDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSA 68

Query:    83 CPDPLY--------SDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGAS 134
               +  Y        S+ +  ++    +    R F+LD+  PR+L+ A   V L++KS   
Sbjct:    69 LRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLC-PRILYAAGELVQLLIKSNIC 127

Query:   135 HYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
              Y EF+++D   M   + ++ SVP SR+ +F  K+L ++EK  LM+F      +   D+ 
Sbjct:   128 RYAEFRAVDHVCMRH-NGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDY-GEDKC 185

Query:   195 EENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL 254
              E+++    E     F E+L   ++  KI S V+ AIAM        E       G+ R 
Sbjct:   186 NEDSL----EFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE-------GMQRT 234

Query:   255 ALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSY 314
               +  S+GR+ N     ++P+YG GELPQ FCR  AV G +Y L+  V  +  D NS  +
Sbjct:   235 QRFLGSLGRYGNT--PFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEF 292

Query:   315 KGVRLASGQDILSHKLVLDPSFT 337
               +  ++G+ + +  +V  P +T
Sbjct:   293 --LLSSAGKTLRAKNVVSAPGYT 313

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS;NAS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0000922 "spindle pole" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=ISS

GO:0005818 "aster" evidence=IDA

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0008021 "synaptic vesicle" evidence=NAS

DICTYBASE|DDB_G0280143 DDB_G0280143 "Rab escort protein (REP)" [Dictyostelium discoideum (taxid:44689)]

 Score = 314 (115.6 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 92/324 (28%), Positives = 162/324 (50%)

Query:    91 VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
             +++   + + L +  R F++D+S P +L+     V L++ S AS YLEFKS+D  ++   
Sbjct:   162 IDVPLVSDKSLEELGRLFSIDIS-PTLLYGRGALVKLLISSSASRYLEFKSLDQNYLF-T 219

Query:   151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV-----QGHLSLDESE-ENNVRISEE 204
             + K+  +P ++ +IFKD +  L EK  +M+F + +     +G   LD++E E + ++S  
Sbjct:   220 NGKVHEIPSTKGSIFKDSTFSLKEKRLIMKFMESIRELKKEGS-DLDDAEKEAHFKLSII 278

Query:   205 DLDSPFAEFLT---KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSI 261
             +L   F  F+      K    ++S +LY +++   D E     L+T  GI  + LY SS+
Sbjct:   279 ELGKQFKSFIDYIKSFKFTQLVESFILYGLSLIHEDLE--SIPLET--GIESVFLYTSSL 334

Query:   262 GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS 321
               +   +   + P YG G++PQAFCR  AV G  YVL   V S+  +Q +G  K +  + 
Sbjct:   335 LVY--GVSPFLIPYYGVGDIPQAFCRLCAVFGGSYVLGRTVDSIQFNQETGKVKSIICSE 392

Query:   322 GQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS 381
             GQ I +   +  P +    +++SS   L            +   +R I I  S +    +
Sbjct:   393 GQTIQTTHFITSPKYL--NTISSSQNNL-----ILPQKTIRKTYSRFIGIIESKIIGTQN 445

Query:   382 NFLVIFPPRSLFPEQVTSIRVLQL 405
             +  +  PP+S+   +   I +LQL
Sbjct:   446 DSFITIPPKSIGNNK-NVINILQL 468

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=ISS

GO:0018344 "protein geranylgeranylation" evidence=ISS

GO:0017137 "Rab GTPase binding" evidence=ISS

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=ISS

UNIPROTKB|P24386 CHM "Rab proteins geranylgeranyltransferase component A 1" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 3.9e-37, Sum P(2) = 3.9e-37
 Identities = 92/301 (30%), Positives = 144/301 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F E+L   KL   ++ IV+++IAM  
Sbjct:   293 RMLMKFLTFCMEY----EKYPDEYKGYEE---ITFYEYLKTQKLTPNLQYIVMHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   +++ S+  P ++ S  Q  Q     
Sbjct:   398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSY-FPENMCSRVQYRQ----- 451

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414
                      ++R + IT RS LK D    + I    +  P    ++RV++L  +   C  
Sbjct:   452 ---------ISRAVLITDRSVLKTDSDQQISILTVPAEEPGTF-AVRVIELCSSTMTCMK 501

Query:   415 G 415
             G
Sbjct:   502 G 502

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0018344 "protein geranylgeranylation" evidence=TAS

UNIPROTKB|E2RKG1 CHM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
 Identities = 95/302 (31%), Positives = 143/302 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   233 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 291

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   292 RMLMKFLTFCMEY----EKHPDEYKAYEE---ITFSEYLKTQKLTPNLQYFVLHSIAMT- 343

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   344 -----SETASNTIDGLKATKNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 396

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILS-HKLVLDPSFTVPGSLASSHQQLQESFQ 354
             Y LR  V  L+ D+ S   K +    GQ I+S H LV D  F+       SH Q ++   
Sbjct:   397 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISKHFLVEDSYFS---ENTCSHVQYRQ--- 450

Query:   355 AFSLSDNKGKVARGICIT-RSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCP 413
                       ++R + IT RS LK D    + I       P    ++RV++L  +   C 
Sbjct:   451 ----------ISRSVLITDRSVLKTDSDQQISILTVPGEEPGTF-AVRVIELCSSTMTCM 499

Query:   414 LG 415
              G
Sbjct:   500 KG 501

GO:0001568 "blood vessel development" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

MGI|MGI:892979 Chm "choroidermia" [Mus musculus (taxid:10090)]

 Score = 287 (106.1 bits), Expect = 8.5e-36, Sum P(2) = 8.5e-36
 Identities = 95/312 (30%), Positives = 149/312 (47%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   +  +  VP SRA +F  K L ++EK
Sbjct:   246 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGTVEQVPCSRADVFNSKQLTMVEK 304

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE   + F+E+L   KL   ++  VL++IAM  
Sbjct:   305 RMLMKFLTFCVEY----EDHPDEYKAYEE---TTFSEYLKTQKLTPNLQYFVLHSIAMT- 356

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   357 -----SETTSSTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 409

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ S   K +    GQ I+S   V++ S+ +  +  S  Q  Q     
Sbjct:   410 YCLRHSVQCLVVDKESRKCKAIVDQFGQRIISKHFVIEDSY-LSENTCSGVQYRQ----- 463

Query:   356 FSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVT-SIRVLQLGGNLAVCP 413
                      ++R + IT  S LKPD    + I    +   E  + ++RV++L  +   C 
Sbjct:   464 ---------ISRAVLITDGSVLKPDSDQQVSILTVPA--EESGSFAVRVIELCSSTMTCM 512

Query:   414 LG--MVSLDLLS 423
              G  +V L  +S
Sbjct:   513 KGTYLVHLTCMS 524

GO:0001568 "blood vessel development" evidence=IMP

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

UNIPROTKB|K7GR66 CHM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
 Identities = 73/221 (33%), Positives = 114/221 (51%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK+I    +   + ++  VP SRA +F  K L ++EK
Sbjct:   234 KLLYSRGLLIDLLIKSNVSRYAEFKNI-TRILAFREGRVEQVPCSRADVFNSKQLTMVEK 292

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F      +    E   +  +  EE     F+E+L   KL   ++  VL++IAM  
Sbjct:   293 RMLMKFLTFCMDY----EEYPDEYKAYEE---ISFSEYLKTQKLTPNLQYFVLHSIAMT- 344

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +
Sbjct:   345 -----SETASSTIDGLKATQNFLHCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGI 397

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
             Y LR  V  L+ D+ SG  K +    GQ I++   +++ S+
Sbjct:   398 YCLRHSVQCLVVDKESGKCKAIIDHFGQRIIAKHFIVEDSY 438

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

UNIPROTKB|P26374 CHML "Rab proteins geranylgeranyltransferase component A 2" [Homo sapiens (taxid:9606)]

 Score = 282 (104.3 bits), Expect = 4.0e-34, Sum P(2) = 4.0e-34
 Identities = 90/300 (30%), Positives = 144/300 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y+EFK++    +   + K+  VP SRA +F  K L ++EK
Sbjct:   236 KLLYSQGLLIDLLIKSDVSRYVEFKNV-TRILAFREGKVEQVPCSRADVFNSKELTMVEK 294

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F       L  ++  +      +      F+E+L   KL   ++  VL++IAM  
Sbjct:   295 RMLMKFLTFC---LEYEQHPDEYQAFRQ----CSFSEYLKTKKLTPNLQHFVLHSIAMT- 346

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                  SE    T DG+N    +   +GRF N     ++P+YGQGE+PQ FCR  AV G +
Sbjct:   347 -----SESSCTTIDGLNATKNFLQCLGRFGNT--PFLFPLYGQGEIPQGFCRMCAVFGGI 399

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V   + D+ SG  K +    GQ I +   +++ S+ +     S+ Q  Q     
Sbjct:   400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRINAKYFIVEDSY-LSEETCSNVQYKQ----- 453

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
                      ++R + IT +S LK DL     ++I PP    P    ++RV +L  +   C
Sbjct:   454 ---------ISRAVLITDQSILKTDLDQQTSILIVPPAE--PG-ACAVRVTELCSSTMTC 501

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0007601 "visual perception" evidence=TAS

UNIPROTKB|F1N2I0 CHML "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 278 (102.9 bits), Expect = 4.5e-34, Sum P(2) = 4.5e-34
 Identities = 88/300 (29%), Positives = 145/300 (48%)

Query:   116 RVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEK 175
             ++L+     +DL++KS  S Y EFK++    +   + K+  VP SRA +F  K L ++EK
Sbjct:   231 KLLYSQGLLIDLLIKSNVSRYAEFKNV-TRILAFREGKVEQVPCSRADVFNSKELTMVEK 289

Query:   176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMAD 235
               LM+F       L  ++  E     ++      F+E+L    L   ++  +L++IAM  
Sbjct:   290 RMLMKFLTFC---LDYEQHPEEYQAFTQ----CSFSEYLKTKNLTPSLQHFILHSIAM-- 340

Query:   236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCL 295
                 +SE    T DG+     +   +GRF N     ++P+YGQGE+PQ FCR  AV G +
Sbjct:   341 ----MSESSCTTVDGLKATKTFLQCLGRFGNT--PFLFPLYGQGEIPQCFCRMCAVFGGI 394

Query:   296 YVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQA 355
             Y LR  V  L+ D+ SG  K +    GQ I +   +++ S+ +     SS Q  Q     
Sbjct:   395 YCLRHKVQCLVVDRESGRCKAIIDHLGQRINAKYFIVEDSY-LSEETCSSVQYKQ----- 448

Query:   356 FSLSDNKGKVARGICIT-RSSLKPDLSN--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVC 412
                      ++R + IT +S LK D      ++I PP  + P    ++R+++L  +   C
Sbjct:   449 ---------ISRAVLITDQSVLKTDSDQQISILIVPP--VEPG-AHAVRIIELCSSTMTC 496

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005968 "Rab-protein geranylgeranyltransferase complex" evidence=IEA

GO:0004663 "Rab geranylgeranyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.256.25.1 hypothetical protein (552 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	2e-56
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	2e-51
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	1e-48

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  192 bits (489), Expect = 2e-56
 Identities = 108/416 (25%), Positives = 179/416 (43%), Gaps = 67/416 (16%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADL-THFLNSHSTPSS 81
           +D+IV+GTGL E ++S   S  GK VLH+D N +YG   +SLS+  L   F      P S
Sbjct: 5   YDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEEKPPS 64

Query: 82  VCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKS 141
                                   R++N+D+  P+ L      V L++ +  + YLEFK+
Sbjct: 65  K-------------LGRS------RDWNVDLI-PKFLMANGELVKLLIHTDVTRYLEFKA 104

Query: 142 IDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRI 201
           ++ +++     K+  VP +         +G+ EK +  +F   VQ     DE +      
Sbjct: 105 VEGSYVYK-GGKIHKVPANEMEALSSPLMGIFEKRRFRKFLTYVQ---DYDEDDPK---- 156

Query: 202 SEEDLD---SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258
           + + LD       E   K  L       + +A+A+   D  +++        + R+ LY+
Sbjct: 157 THDGLDPRKRTMLEVYKKFGLDENTIDFIGHALALYRDDDYLNQ---PALPTVERIKLYS 213

Query: 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR 318
            S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ D+N G   GV+
Sbjct: 214 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDEIVYDEN-GKVVGVK 270

Query: 319 LASGQDILSHKLVL-DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377
             SG ++   K V+ DPS+  P  +                    G+V R ICI    + 
Sbjct: 271 --SGGEVARAKQVICDPSYF-PDKVRK-----------------VGQVIRAICILSHPIP 310

Query: 378 --PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCP----LGMVSLDLLSPLPH 427
              D  +  +I P   +  +  + I +        VCP    + +VS  + +  P 
Sbjct: 311 NTNDAGSVQIIIPQNQVGRK--SDIYISCCSYAHNVCPKGKYIAIVSTTVETENPE 364

Length = 439

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  178 bits (454), Expect = 2e-51
 Identities = 114/404 (28%), Positives = 174/404 (43%), Gaps = 62/404 (15%)

Query: 17  PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSH 76
             E T +D+I++GTGL ES++SAA S  GK+VLH+D N +YGS  +SL++  L  + +  
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFD-- 58

Query: 77  STPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHY 136
                  P     D               R+ N+D+  P+ LF     + +++++G + Y
Sbjct: 59  --ECEKRPSKGGGD---------------RDLNIDLI-PKFLFANSELLKILIETGVTEY 100

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEE 196
           LEFK I  +F+     K+  VP + A IF    L L EK ++MRF K V  +       E
Sbjct: 101 LEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNY------AE 153

Query: 197 NNVRISEEDLDSPFAEFL-TKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLA 255
               + E        EFL  K  L    +  + + IA++  D ++       R+ + R+ 
Sbjct: 154 QKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALS-LDLDI-----PAREALERIL 207

Query: 256 LYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP-VISLLTDQNSGSY 314
            Y  S G +  +    +YP YG GEL Q F R +AV G  Y+L         T       
Sbjct: 208 RYMRSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKDVETVD 265

Query: 315 KGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRS 374
           KG          + K++  P++       S                   ++ R ICI   
Sbjct: 266 KG-----SLTQKAGKIISSPTY---FREDSKSVGQFY------------RIIRAICILLV 305

Query: 375 SLKP---DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
              P    L +  +IFPP SL  ++   I+V  LG    VCP G
Sbjct: 306 HPVPFTTGLDSLQIIFPPFSL--KRKNDIQVAGLGSGSEVCPEG 347

Length = 434

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  171 bits (436), Expect = 1e-48
 Identities = 111/400 (27%), Positives = 184/400 (46%), Gaps = 58/400 (14%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV GTGL E ++S   S +GK VLH+D NP+YG   +SL++  L        TP   
Sbjct: 5   YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP--- 61

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P+ L  +               R++N+D+  P+ +  +   V ++L +  + YLEFK I
Sbjct: 62  -PESLGRN---------------RDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVI 104

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           D +++   + K+  VP +         +G  EKN+   F + V  +      +EN+    
Sbjct: 105 DGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNY------DENDPETH 158

Query: 203 EE-DLDS-PFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           +  +L +   A+   K  L       V +A+A+   D  +++  ++T   + R+ LY  S
Sbjct: 159 KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIET---VMRIKLYMDS 215

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    IYP+YG G LPQAF R  A+ G  Y+L  PV  ++ D+N G   GV+  
Sbjct: 216 LSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSE 272

Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G+      ++ DPS+  P  +                    GKV R ICI    + P+ 
Sbjct: 273 GGEVAKCKLVICDPSY-FPDKVKK-----------------VGKVIRCICILNHPI-PNT 313

Query: 381 SN---FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMV 417
           +N     +I P + L   +   I ++ +  N  VCP G  
Sbjct: 314 NNANSCQIIIPQKQL--GRKNDIYIMLVSSNHGVCPKGKY 351

Length = 443

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	100.0
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	100.0
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.97
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.95
PRK07233	434	hypothetical protein; Provisional	99.95
PLN02576	496	protoporphyrinogen oxidase	99.94
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.94
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.94
PRK07208	479	hypothetical protein; Provisional	99.93
PLN02612	567	phytoene desaturase	99.93
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.93
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.93
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.92
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.91
PLN02487	569	zeta-carotene desaturase	99.91
PLN02268	435	probable polyamine oxidase	99.87
PLN02676	487	polyamine oxidase	99.86
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.86
PLN02529	738	lysine-specific histone demethylase 1	99.86
PLN02568	539	polyamine oxidase	99.85
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.84
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.83
PLN03000	881	amine oxidase	99.82
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.78
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.75
PLN02976	1713	amine oxidase	99.74
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.71
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.68
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.67
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.57
COG3349	485	Uncharacterized conserved protein [Function unknow	99.52
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.42
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.4
COG2081	408	Predicted flavoproteins [General function predicti	99.38
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.36
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.27
COG0579	429	Predicted dehydrogenase [General function predicti	99.22
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.16
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.16
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.15
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.07
PRK08274	466	tricarballylate dehydrogenase; Validated	99.06
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.05
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.0
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.99
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.98
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.95
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.94
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.94
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.92
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.92
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.91
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.9
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.88
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.88
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.85
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.79
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.78
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.74
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.7
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.69
PRK10157	428	putative oxidoreductase FixC; Provisional	98.68
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.64
PRK10015	429	oxidoreductase; Provisional	98.63
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.62
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.62
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.58
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.58
PRK07121	492	hypothetical protein; Validated	98.58
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.57
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.54
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.53
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.52
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.51
PRK06370	463	mercuric reductase; Validated	98.51
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.5
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.5
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.5
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.49
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.49
PRK06116	450	glutathione reductase; Validated	98.48
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.48
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.48
PTZ00058	561	glutathione reductase; Provisional	98.46
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.45
PRK08013	400	oxidoreductase; Provisional	98.45
PRK09126	392	hypothetical protein; Provisional	98.45
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.44
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.44
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.44
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.42
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.42
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.42
PRK07045	388	putative monooxygenase; Reviewed	98.42
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.41
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.41
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.41
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.39
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.39
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.38
PLN02463	447	lycopene beta cyclase	98.38
PRK14694	468	putative mercuric reductase; Provisional	98.37
PRK06184	502	hypothetical protein; Provisional	98.37
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.37
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.37
PLN02661	357	Putative thiazole synthesis	98.37
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.37
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.37
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.36
PRK07236	386	hypothetical protein; Provisional	98.36
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.36
PRK08163	396	salicylate hydroxylase; Provisional	98.36
PRK12831	464	putative oxidoreductase; Provisional	98.35
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.35
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.35
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.35
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.35
COG3573	552	Predicted oxidoreductase [General function predict	98.34
PRK13748	561	putative mercuric reductase; Provisional	98.34
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.33
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.33
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.33
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.33
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	98.33
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.32
PLN02985	514	squalene monooxygenase	98.31
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.31
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.31
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.31
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.3
TIGR02053	463	MerA mercuric reductase. This model represents the	98.3
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.3
PRK06185	407	hypothetical protein; Provisional	98.3
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.3
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.29
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.28
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.28
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.28
PRK06834	488	hypothetical protein; Provisional	98.28
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.28
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.27
PRK06847	375	hypothetical protein; Provisional	98.27
PLN02697	529	lycopene epsilon cyclase	98.27
PRK14727	479	putative mercuric reductase; Provisional	98.27
PRK07190	487	hypothetical protein; Provisional	98.26
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.25
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.25
PRK06126	545	hypothetical protein; Provisional	98.24
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.24
PTZ00052	499	thioredoxin reductase; Provisional	98.24
PRK07804	541	L-aspartate oxidase; Provisional	98.24
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.24
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.24
PTZ00367	567	squalene epoxidase; Provisional	98.24
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.24
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.23
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.23
PRK12839	572	hypothetical protein; Provisional	98.23
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.23
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.22
PRK06753	373	hypothetical protein; Provisional	98.22
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.22
PLN02507	499	glutathione reductase	98.21
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.21
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.2
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.2
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.2
PRK08244	493	hypothetical protein; Provisional	98.2
PRK11445	351	putative oxidoreductase; Provisional	98.2
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.19
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.19
PRK07538	413	hypothetical protein; Provisional	98.19
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.18
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.18
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.18
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.17
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.17
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.16
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.16
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.16
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.15
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.15
PRK05257	494	malate:quinone oxidoreductase; Validated	98.14
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.14
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.14
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.14
PRK07588	391	hypothetical protein; Provisional	98.14
PRK06175	433	L-aspartate oxidase; Provisional	98.14
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.14
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.14
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.13
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.13
PLN02852	491	ferredoxin-NADP+ reductase	98.12
PRK05868	372	hypothetical protein; Validated	98.12
PLN02546	558	glutathione reductase	98.12
PRK02106	560	choline dehydrogenase; Validated	98.12
PRK10262	321	thioredoxin reductase; Provisional	98.11
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.11
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.11
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.11
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.1
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.1
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.09
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.08
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.08
PRK06475	400	salicylate hydroxylase; Provisional	98.07
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.07
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.06
PRK07395	553	L-aspartate oxidase; Provisional	98.06
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.06
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.06
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.05
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.05
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.05
PLN02815	594	L-aspartate oxidase	98.04
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.04
PRK08294	634	phenol 2-monooxygenase; Provisional	98.03
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.02
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.02
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.02
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.01
PRK06996	398	hypothetical protein; Provisional	98.01
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.01
PRK08071	510	L-aspartate oxidase; Provisional	98.0
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.98
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.97
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.95
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.94
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.94
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.94
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.93
PRK08401	466	L-aspartate oxidase; Provisional	97.93
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.93
PRK08275	554	putative oxidoreductase; Provisional	97.92
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.91
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.91
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.9
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.89
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.88
PRK09077	536	L-aspartate oxidase; Provisional	97.88
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.86
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.86
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.84
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.83
PTZ00188	506	adrenodoxin reductase; Provisional	97.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.82
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.81
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.79
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.77
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.77
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.73
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.72
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.72
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.71
PRK13984	604	putative oxidoreductase; Provisional	97.71
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.7
KOG2853	509	consensus Possible oxidoreductase [General functio	97.69
PRK07512	513	L-aspartate oxidase; Provisional	97.69
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.68
PRK07846	451	mycothione reductase; Reviewed	97.68
PLN02785	587	Protein HOTHEAD	97.68
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.67
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.67
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.66
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.57
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.34
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.34
PRK09897	534	hypothetical protein; Provisional	97.27
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.22
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.17
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	97.15
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.11
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.03
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.93
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.93
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.93
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.92
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.91
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.79
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.77
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.76
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.74
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.72
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.47
KOG2852	380	consensus Possible oxidoreductase [General functio	96.46
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.4
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.35
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.21
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.21
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	96.16
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.05
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.99
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.84
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.83
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.79
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.78
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.74
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.71
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.67
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.5
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.49
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	95.42
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	95.38
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.37
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.34
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.29
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.18
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.16
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.13
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.1
TIGR02053	463	MerA mercuric reductase. This model represents the	95.01
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	94.99
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.96
PRK06370	463	mercuric reductase; Validated	94.93
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	94.9
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	94.9
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.86
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.83
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	94.82
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.79
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.75
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.74
PRK07846	451	mycothione reductase; Reviewed	94.71
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.71
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.7
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	94.7
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.69
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.69
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	94.68
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.66
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	94.56
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.51
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.47
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.42
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.3
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	94.3
PRK04148	134	hypothetical protein; Provisional	94.25
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.23
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.22
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.15
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	94.12
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.97
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	93.93
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.92
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.88
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.85
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.81
PRK05257	494	malate:quinone oxidoreductase; Validated	93.81
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.77
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	93.7
PTZ00153	659	lipoamide dehydrogenase; Provisional	93.68
PTZ00058	561	glutathione reductase; Provisional	93.68
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	93.67
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.6
PRK14989	847	nitrite reductase subunit NirD; Provisional	93.59
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.55
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	93.52
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.49
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.47
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.43
PRK10262	321	thioredoxin reductase; Provisional	93.39
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.39
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.38
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.37
PLN02507	499	glutathione reductase	93.36
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.35
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.34
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.28
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.22
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.21
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	93.17
PRK06116	450	glutathione reductase; Validated	93.14
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.1
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.07
PRK07121	492	hypothetical protein; Validated	93.04
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.02
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.9
PRK12831	464	putative oxidoreductase; Provisional	92.81
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	92.8
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	92.8
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	92.78
PLN02546	558	glutathione reductase	92.77
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.62
PRK13748	561	putative mercuric reductase; Provisional	92.6
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	92.6
PRK14694	468	putative mercuric reductase; Provisional	92.54
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.51
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.45
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	92.42
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	92.38
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	92.26
PRK07417	279	arogenate dehydrogenase; Reviewed	92.24
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.19
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.17
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.14
PRK14727	479	putative mercuric reductase; Provisional	92.12
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.11
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.11
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	92.1
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.09
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	92.02
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.01
PRK13339	497	malate:quinone oxidoreductase; Reviewed	91.95
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.9
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	91.82
PTZ00052	499	thioredoxin reductase; Provisional	91.81
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.81
PRK10157	428	putative oxidoreductase FixC; Provisional	91.77
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	91.73
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.68
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.65
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.61
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	91.6
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	91.58
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	91.44
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.41
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	91.36
PRK06847	375	hypothetical protein; Provisional	91.34
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.32
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	91.29
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.26
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.26
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	91.25
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	91.24
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.21
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	91.2
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.18
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.15
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	90.9
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	90.83
PRK07045	388	putative monooxygenase; Reviewed	90.8
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	90.8
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	90.75
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	90.73
PRK12842	574	putative succinate dehydrogenase; Reviewed	90.7
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.68
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	90.65
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	90.59
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	90.56
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	90.5
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	90.3
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.29
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.23
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	90.18
PRK06175	433	L-aspartate oxidase; Provisional	90.12
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	90.11
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	90.1
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	89.97
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	89.94
PRK10015	429	oxidoreductase; Provisional	89.93
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	89.81
PRK06834	488	hypothetical protein; Provisional	89.78
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	89.76
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.72
PRK06223	307	malate dehydrogenase; Reviewed	89.72
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.65
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	89.63
PLN02464	627	glycerol-3-phosphate dehydrogenase	89.58
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	89.57
PLN02695	370	GDP-D-mannose-3',5'-epimerase	89.52
PRK15116	268	sulfur acceptor protein CsdL; Provisional	89.36
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.35
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	89.32
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.3
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	89.27
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.23
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	89.22
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	89.16
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	89.1
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	89.06
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	89.05
PRK12839	572	hypothetical protein; Provisional	89.01
PRK08306	296	dipicolinate synthase subunit A; Reviewed	89.01
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	88.97
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	88.91
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	88.81
PTZ00082	321	L-lactate dehydrogenase; Provisional	88.75
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	88.74
PRK07831	262	short chain dehydrogenase; Provisional	88.61
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	88.58
PLN02256	304	arogenate dehydrogenase	88.5
PRK07588	391	hypothetical protein; Provisional	88.47
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	88.35
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	88.35
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.26
PRK07190	487	hypothetical protein; Provisional	88.21
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	88.18
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	88.17
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.1
PLN02572	442	UDP-sulfoquinovose synthase	88.05
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	88.02

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=5.6e-61  Score=466.20  Aligned_cols=358  Identities=35%  Similarity=0.635  Sum_probs=277.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      |+++|||||+|||+.+++.|++|+++|++|+|+|+|++|||.++|++++++..|+......                 ..
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~   63 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP   63 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence            4678999999999999999999999999999999999999999999999988887543110                 00


Q ss_pred             ccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                      +.+ +..|+|++||. |++++++++++++|.++++.+|+||+.++..|++. +|++.++|+++.++|+++.+++.+||++
T Consensus        64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l  140 (438)
T PF00996_consen   64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL  140 (438)
T ss_dssp             HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred             ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence            112 35789999997 99999999999999999999999999999999886 8899999999999999999999999999


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      |+|++++..+.+..+..+.    ..+....++.+++++|++++.+++++.|++++..-+...   .-++.+++.++.+|+
T Consensus       141 mkFl~~v~~~~~~~~~~~~----~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~---~~p~~~~l~ri~~yl  213 (438)
T PF00996_consen  141 MKFLKFVANYEEDDPSTHK----GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYL---TEPAREGLERIKLYL  213 (438)
T ss_dssp             HHHHHHHHHGCTTBGGGST----TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGG---GSBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCCcchhh----ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccc---cccHHHHHHHHHHHH
Confidence            9999999877543221111    113446899999999999999999999998886422211   125678999999999


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (431)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (431)
                      .|+++||++  |++||+||.|+|+|+|||+++++||+++||++|++|..++ +|++++|. ++|++++|++||++|.+. 
T Consensus       214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~-  288 (438)
T PF00996_consen  214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL-  288 (438)
T ss_dssp             HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred             HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence            999999975  6999999999999999999999999999999999999973 68899998 489999999999998875 


Q ss_pred             CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCC--CCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (431)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~  416 (431)
                      +.                 +....++++|+++|+++|+++.  ....+|+||+.+.+.  .+.|||.+.|+++++||+|+
T Consensus       289 p~-----------------~v~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~~--~~dIyv~~~ss~~~~CP~G~  349 (438)
T PF00996_consen  289 PE-----------------KVKKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVGR--KSDIYVLQLSSSTGVCPKGQ  349 (438)
T ss_dssp             GC-----------------GEEEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCTS--SS-EEEEEEEGGGTSS-TT-
T ss_pred             cc-----------------cccccceEEEEEEEEcCCCCCCCCCceEEEecCCcccCC--CCCeEEEEECCCccccCCCc
Confidence            21                 1113468999999999999753  356788899887665  56799999999999999999


Q ss_pred             EEEEEEcCCCC
Q 014049          417 VSLDLLSPLPH  427 (431)
Q Consensus       417 ~~~~i~~~~p~  427 (431)
                      +++|++|.++.
T Consensus       350 yi~~~St~~~t  360 (438)
T PF00996_consen  350 YIAYVSTTVET  360 (438)
T ss_dssp             EEEEEEEEE-S
T ss_pred             EEEEEEeccCC
Confidence            99999998754

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=6e-57  Score=444.39  Aligned_cols=360  Identities=28%  Similarity=0.509  Sum_probs=297.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      |+++|||||||||++||++|+.|+++|++|+|||+|++|||+++|++++++..|+.. +.+.                 +
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~-~~~~-----------------~   62 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKP-GETP-----------------P   62 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcc-cCCC-----------------c
Confidence            467899999999999999999999999999999999999999999998876444321 1110                 1


Q ss_pred             ccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                      +.+ ...+.|++|+. |+++++.+.++++|.++++.+|++|+.++..|++..+|++.++|.+..++|+++.+++.+|+++
T Consensus        63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l  140 (443)
T PTZ00363         63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC  140 (443)
T ss_pred             hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence            112 24689999995 9999999999999999999999999999999987348899999999999999999999999999


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      |+|++++.++....+..+.    ...+...|+.+|++++++++.+++++.+++++.... +.  .+.++..++.++..|+
T Consensus       141 ~kfl~~v~~~~~~~~~~~~----~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~-~~--~~~pa~~tl~ri~~y~  213 (443)
T PTZ00363        141 KNFLQYVSNYDENDPETHK----GLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTND-DY--LNKPAIETVMRIKLYM  213 (443)
T ss_pred             HHHHHHHHhhccCChhhhc----ccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccc-cc--ccCCHHHHHHHHHHHH
Confidence            9999999876542211110    011346899999999999999999988876664211 00  0124667888999999


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (431)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (431)
                      .|+++||.  ++++||+||+++|+|+|+|.++++||+|+|+++|++|..+ +++++++|++++|++++|++||++|.+. 
T Consensus       214 ~S~~~~g~--~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~~-  289 (443)
T PTZ00363        214 DSLSRYGK--SPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSYF-  289 (443)
T ss_pred             HHHhhccC--CcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECcccc-
Confidence            99999985  3478999999999999999999999999999999999987 3578889999999999999999998875 


Q ss_pred             CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (431)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~  416 (431)
                      +.-                 ....++++|++||+++|++.  +.+..+|+||+.+++.  .+.|||.+.|+++++||+|+
T Consensus       290 p~~-----------------~~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~g~  350 (443)
T PTZ00363        290 PDK-----------------VKKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPKGK  350 (443)
T ss_pred             ccc-----------------cccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCCCc
Confidence            221                 12467899999999999864  2356789999998876  57899999999999999999


Q ss_pred             EEEEEEcCCCCC
Q 014049          417 VSLDLLSPLPHQ  428 (431)
Q Consensus       417 ~~~~i~~~~p~~  428 (431)
                      +++|++|.++..
T Consensus       351 ~i~~~st~~~t~  362 (443)
T PTZ00363        351 YIAIISTTVETN  362 (443)
T ss_pred             EEEEEEEecCCC
Confidence            999999997653

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-52  Score=384.37  Aligned_cols=354  Identities=31%  Similarity=0.535  Sum_probs=296.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      +++|||||+|+|+..++.+++|+.+|++|+|+|+|++|||-.+|+++.++..|+.......                 ++
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~-----------------~~   64 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKP-----------------PE   64 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccC-----------------cc
Confidence            4569999999999999999999999999999999999999999999988878876431100                 01


Q ss_pred             cccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (431)
                      .. ...+.|++|+. |++++..++++.+|++.++.+|++|+.++..|++. +|+++++|.+..+++.++.+++.+||++|
T Consensus        65 ~~-~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~  141 (440)
T KOG1439|consen   65 KL-GRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM  141 (440)
T ss_pred             cc-ccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence            11 35789999998 99999999999999999999999999999999986 67999999999999999999999999999


Q ss_pred             HHHHHHHcccCCCccccccccccccccC-CcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          180 RFFKLVQGHLSLDESEENNVRISEEDLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      ||+.++.++.+..+..+.     ..+.. .++.+++.++++....+++..+++++...+  .. -..++.+++.++.+|+
T Consensus       142 kFl~~V~n~~e~~~~~~~-----~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd--~~-ld~p~~~~~~ri~~Y~  213 (440)
T KOG1439|consen  142 KFLKFVLNYDEEDPKTWQ-----GYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDD--SY-LDQPAKETLERILLYV  213 (440)
T ss_pred             HHHHHHhhhhhhcccccc-----ccccccchHHHHHHHhcccccceeeeeeeeEEEecc--hh-ccCccHHHHHHHHHHH
Confidence            999999887654332111     12232 389999999999998888887765553222  10 1246778899999999


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (431)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (431)
                      +|+++||.++  ++||+||.++|+|+|||.++..||+++||.++.+|..++ +|+++||+ +.+++.+++.||++|++. 
T Consensus       214 ~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~-  288 (440)
T KOG1439|consen  214 RSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF-  288 (440)
T ss_pred             HHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc-
Confidence            9999999754  899999999999999999999999999999999999853 68888987 567778999999999975 


Q ss_pred             CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC--CCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (431)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~  416 (431)
                      +.                 +....++++|++||++.|.+  .+.+..+++||+.+.+.  .+.|||+..|++..+||+|+
T Consensus       289 ~~-----------------~~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~r--ksdi~v~~~ss~~~vcpeG~  349 (440)
T KOG1439|consen  289 PQ-----------------KVKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVGR--KSDIYVFGLSSAHNVCPEGK  349 (440)
T ss_pred             hH-----------------HHHhhhheeeeeEEecCCcCcCCccceeeEEechhhhCC--cccEEEEEeccCCCcCCCce
Confidence            21                 11235678999999988754  35678999999988877  88999999999999999999


Q ss_pred             EEEEEEcCC
Q 014049          417 VSLDLLSPL  425 (431)
Q Consensus       417 ~~~~i~~~~  425 (431)
                      +++||+|-+
T Consensus       350 yia~vsT~~  358 (440)
T KOG1439|consen  350 YIAYVSTTV  358 (440)
T ss_pred             EEEEEEecc
Confidence            999999976

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-50  Score=370.29  Aligned_cols=372  Identities=36%  Similarity=0.614  Sum_probs=289.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChh--------hhhhhhh---cCCCCCC------
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHSTPSS------   81 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~--------~~~~~~~---~~~~~~~------   81 (431)
                      .++.|||||||+|+.+.+.|++.+|+|.+|+|||+|.+|||.|++|++.        .+..+.+   +...+..      
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~   84 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA   84 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence            3568999999999999999999999999999999999999999999976        3333321   1111111      


Q ss_pred             ----CCCCCccccccccc---------------cccccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccc
Q 014049           82 ----VCPDPLYSDVEISN---------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI  142 (431)
Q Consensus        82 ----~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~  142 (431)
                          .....++.+.+..+               .....+.++.|+|++|+. |+++++.|.++++|+++++.+|.||+.+
T Consensus        85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V  163 (547)
T KOG4405|consen   85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV  163 (547)
T ss_pred             CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence                11122222222221               011122356899999997 9999999999999999999999999999


Q ss_pred             cceeeeccCCceeecCCChhhhhccCCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChh
Q 014049          143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK  222 (431)
Q Consensus       143 ~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~  222 (431)
                      +..+... +|++..+|+++.++|+++.|+..+||.||||++++..+...     ...+...++.+++|.+||++++++++
T Consensus       164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tE-----k~~~~~~~~~e~~F~EyL~~~rltp~  237 (547)
T KOG4405|consen  164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTE-----KDPDEYVEFRERPFSEYLKTMRLTPK  237 (547)
T ss_pred             chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhc-----cCcHHHHHhhcCcHHHHHHhcCCChh
Confidence            9988765 78999999999999999999999999999999999988521     11222345667899999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcce
Q 014049          223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV  302 (431)
Q Consensus       223 l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V  302 (431)
                      ++.++.++|++..+.+      .++..++.+...|+.++|+||+.  +|+||.||.|+|+|+|||++++.||.|.|+.+|
T Consensus       238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgnt--pfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V  309 (547)
T KOG4405|consen  238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNT--PFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV  309 (547)
T ss_pred             hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCC--cceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence            9999999999876543      46888999999999999999975  499999999999999999999999999999999


Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC-CCC
Q 014049          303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLS  381 (431)
Q Consensus       303 ~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  381 (431)
                      +.|..+++..++..+..+.|+.+.|+.+|+.|.++ +.-. .             .+...++++|+++|++.++.. +..
T Consensus       310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~-------------~~~~~K~Israv~itd~sil~~e~~  374 (547)
T KOG4405|consen  310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-C-------------SRVQLKQISRAVLITDPSILKTELD  374 (547)
T ss_pred             hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-c-------------cccchhhcceeEEecCccccchhHH
Confidence            99999854444333334679999999999998886 4322 0             112344799999999988643 222


Q ss_pred             ce--EEEeCCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEc
Q 014049          382 NF--LVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLS  423 (431)
Q Consensus       382 ~~--~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~  423 (431)
                      ..  +...++. .++  +-.+.+...++++..||+|.+++++..
T Consensus       375 q~~~ll~~~~~-epg--~~avr~iel~~~t~tc~kg~yLvhlT~  415 (547)
T KOG4405|consen  375 QQLSLLSLLAV-EPG--AMAVRLIELCSSTMTCPKGTYLVHLTC  415 (547)
T ss_pred             hhhhhhhcccc-Ccc--hhhHHHHHhhcccccCccceEEEEeec
Confidence            22  2222222 222  567778888889999999999999874

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-49  Score=359.56  Aligned_cols=350  Identities=30%  Similarity=0.520  Sum_probs=289.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      .+.|||||.|+|+..++.+++|+.+|++|+|+|+|++||+-.+|++..++..|++.+..-+                  .
T Consensus         4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p------------------~   65 (434)
T COG5044           4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRP------------------S   65 (434)
T ss_pred             cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccc------------------c
Confidence            3479999999999999999999999999999999999999999999998888887652110                  0


Q ss_pred             cccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (431)
                       -....++|++|+. |++++..++++.+|++.++.+|++|+++...|.+. +|+++++|.++.++|+++.+++.+|+.+|
T Consensus        66 -k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~vm  142 (434)
T COG5044          66 -KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVM  142 (434)
T ss_pred             -ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHHH
Confidence             0124678999998 99999999999999999999999999999999887 66999999999999999999999999999


Q ss_pred             HHHHHHHcccCCCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      ||++++.++.+..      ..+...+.++++.+++. +|+++.....++.++++++. +.+     +++++++.++.+|+
T Consensus       143 rFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl~-----~p~re~~erIl~Y~  210 (434)
T COG5044         143 RFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DLD-----IPAREALERILRYM  210 (434)
T ss_pred             HHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-ccc-----CCchHHHHHHHHHH
Confidence            9999988875421      11122355577777775 69999999999988877742 222     57889999999999


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (431)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (431)
                      +|++.||.+  +++||+||.++|+|+|||.++..||+++||+++.+|.-.   ..+.+|. .++.+..|.+||++|++. 
T Consensus       211 ~Sf~~yg~~--pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~-  283 (434)
T COG5044         211 RSFGDYGKS--PYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF-  283 (434)
T ss_pred             HhhcccCCC--cceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc-
Confidence            999999964  599999999999999999999999999999999999754   3334665 567789999999988875 


Q ss_pred             CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeC-C--CCCCCCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCC
Q 014049          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-S--SLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG  415 (431)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G  415 (431)
                      +.-.    ..       +   .....+.|++|+.. .  ++....+..+++|||.++..  .+.|||...|+++.+||||
T Consensus       284 ~~~~----~~-------~---~q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPEG  347 (434)
T COG5044         284 REDS----KS-------V---GQFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPEG  347 (434)
T ss_pred             cccc----cc-------c---chhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCCc
Confidence            2200    00       0   11246788898865 3  34445688999999999988  5669999999999999999


Q ss_pred             cEEEEEEcCC
Q 014049          416 MVSLDLLSPL  425 (431)
Q Consensus       416 ~~~~~i~~~~  425 (431)
                      ++++||+|-.
T Consensus       348 y~l~yisT~~  357 (434)
T COG5044         348 YYLAYISTID  357 (434)
T ss_pred             eEEEEEEecc
Confidence            9999999864

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=3.4e-33  Score=285.07  Aligned_cols=345  Identities=17%  Similarity=0.190  Sum_probs=224.3

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccCC
Q 014049           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH  104 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (431)
                      |||||||++||+||++|+++|++|+||||++++||+++|++.+                                     
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~-------------------------------------   43 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD-------------------------------------   43 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence            6999999999999999999999999999999999999998653                                     


Q ss_pred             CCceeeecCCCeEEeeCchHHHHHHhcCc--ccccccccccceee-eccCCceeecCCChhhhhcc-CCCChHHHHHHHH
Q 014049          105 PRNFNLDVSGPRVLFCADHAVDLMLKSGA--SHYLEFKSIDATFM-LDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR  180 (431)
Q Consensus       105 ~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~--~~~~~f~~~~~~~~-~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l~~  180 (431)
                        +|.+|. |++++..++.+.+++...|.  .+++++...++.|. +..+|+.+.++.+....... ..+++.+...+.+
T Consensus        44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~  120 (502)
T TIGR02734        44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR  120 (502)
T ss_pred             --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence              577888 69988776667777777774  56788888777663 33467778888765432221 1234566667777


Q ss_pred             HHHHHHcccCC-------Ccccc--cc-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhc
Q 014049          181 FFKLVQGHLSL-------DESEE--NN-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK  246 (431)
Q Consensus       181 ~~~~~~~~~~~-------~~~~~--~~-----~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s  246 (431)
                      |++.++.....       .+...  ..     ......+...|+.+|++++..++.++.++......  +..++  .+.+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~--~g~~p--~~~~  196 (502)
T TIGR02734       121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALF--LGGNP--FRTP  196 (502)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhccccee--eccCc--ccch
Confidence            76655443210       00000  00     01112335689999999988888888876532111  11111  1112


Q ss_pred             hhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEE
Q 014049          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL  326 (431)
Q Consensus       247 ~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~  326 (431)
                      .   +..+..+..   ..+    .+++|.||++.++++|.+.++++|++|+++++|++|..+  ++++++|++++|+++.
T Consensus       197 ~---~~~l~~~~~---~~~----g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~  264 (502)
T TIGR02734       197 S---IYALISALE---REW----GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD  264 (502)
T ss_pred             H---HHHHHHHHH---hhc----eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence            1   111211211   111    267999999999999999999999999999999999987  7788899999999999


Q ss_pred             eCEEEECCC--CCCCCCCCCchhhhhhhh-hhhcccCCCCeEEEEEEEeC---CCCCCCCCceEEEeCCCCC--------
Q 014049          327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL--------  392 (431)
Q Consensus       327 Ad~VI~~p~--~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~--------  392 (431)
                      ||+||++.+  .++..|+. .+. .+... +.+.+...........+.++   ++++ ...+|.+++.+...        
T Consensus       265 ad~VI~a~~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  341 (502)
T TIGR02734       265 ADAVVSNADLHHTYRRLLP-NHP-RRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWP-QLAHHTLCFGPRYKELFDEIFR  341 (502)
T ss_pred             CCEEEECCcHHHHHHHhcC-ccc-cccccccccccCCcCCeeeEEEEeeccccCcCC-CcCceeEecCcCHHHHHHHHhc
Confidence            999997543  34334431 111 11111 11111111122222233345   4453 23455666543211        


Q ss_pred             -C-CCCCCeEEEEEecC-CCccCCCCcEEEEEEcCCCCC
Q 014049          393 -F-PEQVTSIRVLQLGG-NLAVCPLGMVSLDLLSPLPHQ  428 (431)
Q Consensus       393 -~-~~~~~~i~v~~~~~-~~~~aP~G~~~~~i~~~~p~~  428 (431)
                       + -..+|++|+..++. |++.||+|+.++++++++|.+
T Consensus       342 ~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~  380 (502)
T TIGR02734       342 KGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHL  380 (502)
T ss_pred             CCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCC
Confidence             0 02379999999984 899999999999999999864

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.8e-32  Score=276.60  Aligned_cols=342  Identities=19%  Similarity=0.191  Sum_probs=204.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      |..+||||||||++||+||++||++|++|+||||++++||+++|++.+                                
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--------------------------------   48 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--------------------------------   48 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence            356899999999999999999999999999999999999999998753                                


Q ss_pred             cccCCCCceeeecCCCeEEeeCchHHHHHHhcC-cccc-cccccccceee-eccCCceeecCCChhhhhc-cCCCChHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATFM-LDADAKLCSVPDSRAAIFK-DKSLGLMEK  175 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~-~~~~-~~f~~~~~~~~-~~~~g~~~~~p~~~~~~~~-~~~l~~~~k  175 (431)
                             +|.+|. ||+++...... .++.+++ ..++ +++...++.+. +..+|....+..+...... ....++.+.
T Consensus        49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~  119 (487)
T COG1233          49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG  119 (487)
T ss_pred             -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence                   577888 69888776654 5555555 5554 77777777664 3345778888776643322 123345566


Q ss_pred             HHHHHHHHHHHcccCCC----cc--ccc---ccccc------ccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcch
Q 014049          176 NQLMRFFKLVQGHLSLD----ES--EEN---NVRIS------EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (431)
Q Consensus       176 ~~l~~~~~~~~~~~~~~----~~--~~~---~~~~~------~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  240 (431)
                      ..+.+++..+.+..+..    ..  ...   .....      ......+..+++.....++.++..+.+..... . ..+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~-~-~~p  197 (487)
T COG1233         120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG-G-APP  197 (487)
T ss_pred             HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCC
Confidence            56666555433321110    00  000   00000      01123456666665555566776665532222 1 221


Q ss_pred             hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC
Q 014049          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (431)
Q Consensus       241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~  320 (431)
                      .    +. .++..+..+  +....|     +.||+|||++|+++|++.++++||+|+++++|++|.++  +|+.++|++.
T Consensus       198 ~----~~-~a~~~~~~~--~~~~~G-----~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~  263 (487)
T COG1233         198 S----TP-PALYLLLSH--LGLSGG-----VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS  263 (487)
T ss_pred             C----ch-hHHHHHHHH--hcccCC-----eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence            0    01 022222211  111122     78999999999999999999999999999999999998  7777888888


Q ss_pred             CCcEEEeCEEEECCCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC---CCCceEEEeCCCCCCC---
Q 014049          321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIFPPRSLFP---  394 (431)
Q Consensus       321 ~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~---  394 (431)
                      +|+.+.||.||++.+......+   .   ++..+ ........+ +.+.+...-.+..   ...++..++..+....   
T Consensus       264 ~g~~~~ad~vv~~~~~~~~~~l---~---~~~~~-~~~~~~~~~-~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  335 (487)
T COG1233         264 DGENIEADAVVSNADPALLARL---L---GEARR-PRYRGSYLK-SLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEE  335 (487)
T ss_pred             ccceeccceeEecCchhhhhhh---h---hhhhh-hccccchhh-hhHHHHhccCCCCCCcchhhcceEecCCcHHHHHH
Confidence            8878999999987554322221   1   11111 000001111 1111111112221   2334444444332211   


Q ss_pred             ------CCCCeEEEEEec-CCCccCCCCcE-EEEEEcCCC
Q 014049          395 ------EQVTSIRVLQLG-GNLAVCPLGMV-SLDLLSPLP  426 (431)
Q Consensus       395 ------~~~~~i~v~~~~-~~~~~aP~G~~-~~~i~~~~p  426 (431)
                            ...+++|+++++ .|+++||+|+. ++..+.++|
T Consensus       336 ~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~  375 (487)
T COG1233         336 AFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVP  375 (487)
T ss_pred             HhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecC
Confidence                  001269999999 59999999986 333344444

>TIGR02730 carot_isom carotene isomerase

Probab=100.00  E-value=5.5e-31  Score=267.71  Aligned_cols=348  Identities=15%  Similarity=0.160  Sum_probs=215.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      |||||||||++||+||++|+++|++|+||||++.+||++++++.+                                   
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~-----------------------------------   45 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFERE-----------------------------------   45 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccC-----------------------------------
Confidence            699999999999999999999999999999999999999998754                                   


Q ss_pred             CCCCceeeecCCCeEEe------eCchHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhcc-CCCChHH
Q 014049          103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME  174 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~------~~~~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~-~~l~~~~  174 (431)
                          +|.+|. |++++.      ....+.+.+...+.  .+++...+..+ +...+|..+.++.+....... ....|.+
T Consensus        46 ----G~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~  118 (493)
T TIGR02730        46 ----GYRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE  118 (493)
T ss_pred             ----CEEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence                455666 466543      22234445554442  24444333323 222356667777766433321 2234777


Q ss_pred             HHHHHHHHHHHHcccCC------Cc-c-ccccc----c------ccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCC
Q 014049          175 KNQLMRFFKLVQGHLSL------DE-S-EENNV----R------ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADY  236 (431)
Q Consensus       175 k~~l~~~~~~~~~~~~~------~~-~-~~~~~----~------~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~  236 (431)
                      ...+.+|++.++.....      .. . .....    .      ....+...++.++++++..++.++.++.........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~  198 (493)
T TIGR02730       119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV  198 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence            77888887765432210      00 0 00000    0      011233578999999988899999877632111111


Q ss_pred             CcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEE
Q 014049          237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (431)
Q Consensus       237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (431)
                      ...   ++.+.   +..+..+.  ...++    .+++|.||+++|+++|.+.++++|++|+++++|++|.++  ++++++
T Consensus       199 ~p~---~~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g  264 (493)
T TIGR02730       199 VPA---DQTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAVG  264 (493)
T ss_pred             CCc---ccchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEEE
Confidence            110   01111   11121111  11122    267999999999999999999999999999999999987  788899


Q ss_pred             EEeCCCcEEEeCEEEECC--CCCCCCCCCCchhhhhhhhhhh-cccCCCCeEEEEEEEeCCCCCCC-CCceEEEeCCCCC
Q 014049          317 VRLASGQDILSHKLVLDP--SFTVPGSLASSHQQLQESFQAF-SLSDNKGKVARGICITRSSLKPD-LSNFLVIFPPRSL  392 (431)
Q Consensus       317 V~~~~G~~i~Ad~VI~~p--~~~~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~  392 (431)
                      |++.+|+++.||.||++.  ..++.+|+. . ..++...... .+...........+.++.++.+. ...|.++++.-..
T Consensus       265 v~~~~g~~~~ad~vV~a~~~~~~~~~Ll~-~-~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~  342 (493)
T TIGR02730       265 VKLADGEKIYAKRIVSNATRWDTFGKLLK-A-ENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTN  342 (493)
T ss_pred             EEeCCCCEEEcCEEEECCChHHHHHHhCC-c-cccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhc
Confidence            999999999999999753  344445542 1 1122211111 11111122333444457654322 2223355542211


Q ss_pred             CCCCCCeEEEEEec-CCCccCCCCcEEEEEEcCCCCC
Q 014049          393 FPEQVTSIRVLQLG-GNLAVCPLGMVSLDLLSPLPHQ  428 (431)
Q Consensus       393 ~~~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~~p~~  428 (431)
                      ....++++||..++ .|+++||+|+.++++++++|..
T Consensus       343 ~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~  379 (493)
T TIGR02730       343 LEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSME  379 (493)
T ss_pred             cCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChh
Confidence            12347899999998 4899999999999999988763

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.97  E-value=6.3e-30  Score=260.27  Aligned_cols=343  Identities=13%  Similarity=0.044  Sum_probs=200.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      .||||||||++||+||++|+++|++|+||||++++||++++++.+                                   
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~-----------------------------------   46 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR-----------------------------------   46 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence            599999999999999999999999999999999999999998653                                   


Q ss_pred             CCCCceeeecCCCeEEee---CchHHHHHHhcCccccccccccccee-eeccCC-ceeecCCChhhhhcc-CCCChHHHH
Q 014049          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN  176 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g-~~~~~p~~~~~~~~~-~~l~~~~k~  176 (431)
                          +|.+|. |++++..   .+.+-.++.++|+... ++...++.+ .+..|| ..+.++.+.+..... ....+.+.+
T Consensus        47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~  120 (492)
T TIGR02733        47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER  120 (492)
T ss_pred             ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence                577888 6888754   3345566777776521 233344433 233456 345556554332210 011233322


Q ss_pred             HHHH---HHHHHHcccCCCc----c-cccc---------cc-ccccccCCcHHHHHHhc--CCChhHHHHHHHHHhcCCC
Q 014049          177 QLMR---FFKLVQGHLSLDE----S-EENN---------VR-ISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY  236 (431)
Q Consensus       177 ~l~~---~~~~~~~~~~~~~----~-~~~~---------~~-~~~~~~~~s~~~~l~~~--~~~~~l~~~~~~~~~~~~~  236 (431)
                      .+..   ............+    . ....         .. ....+...|+.+|++++  ..++.++.++......  +
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~--~  198 (492)
T TIGR02733       121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL--Y  198 (492)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh--h
Confidence            1111   1111000000000    0 0000         00 00123458999999986  4567788877542211  1


Q ss_pred             CcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEE
Q 014049          237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (431)
Q Consensus       237 ~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (431)
                      ...+ ..+.+..   ..+. ++ .+....  .| .+|++||+++|+++|++.++++|++|+++++|++|.++  ++++++
T Consensus       199 ~~~~-~~~~~~~---~~~~-~~-~~~~~~--~G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g  267 (492)
T TIGR02733       199 SQED-ADETAAL---YGAT-VL-QMAQAP--HG-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW  267 (492)
T ss_pred             ccCC-hhhhhHH---HHHH-Hh-hccccC--CC-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence            1111 0111211   1110 11 111111  01 57899999999999999999999999999999999987  677778


Q ss_pred             EEeCCC-----cEEEeCEEEECCC-CCCCCCCCCchhhhhhhhh-hhcccCCCCeEEEEEEEeCCC-CCCC-CCceEEEe
Q 014049          317 VRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESFQ-AFSLSDNKGKVARGICITRSS-LKPD-LSNFLVIF  387 (431)
Q Consensus       317 V~~~~G-----~~i~Ad~VI~~p~-~~~~~l~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~i~~~~-~~~~-~~~~~~~~  387 (431)
                      |++.+|     +++.||+||++.+ ..+.+++.  ++.++..+. .+.+...........+.+++. ++.+ ..++..++
T Consensus       268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~--~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~  345 (492)
T TIGR02733       268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELLG--PLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS  345 (492)
T ss_pred             EEEecCCCCceEEEECCEEEECCCHHHHHHhcC--cccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeecc
Confidence            877665     6799999997633 33344442  223333222 222211111122233345653 2212 23444444


Q ss_pred             CCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEcCCCCC
Q 014049          388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPHQ  428 (431)
Q Consensus       388 ~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~~~p~~  428 (431)
                      .+       ..++||..++.|++.||+|+.++++++++|+.
T Consensus       346 ~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~  379 (492)
T TIGR02733       346 DH-------QGSLFVSISQEGDGRAPQGEATLIASSFTDTN  379 (492)
T ss_pred             CC-------CceEEEEeCCccccCCCCCceEEEEEcCCCHH
Confidence            32       23899999888889999999999999999753

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.95  E-value=2.1e-25  Score=225.63  Aligned_cols=331  Identities=15%  Similarity=0.154  Sum_probs=203.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (431)
                      +.||+|||||++||+||..|+++    |++|+|||+++++||+++|.+.+                              
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------   51 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------   51 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence            36999999999999999999999    99999999999999999997542                              


Q ss_pred             cccccCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHH
Q 014049           98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN  176 (431)
Q Consensus        98 ~~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~  176 (431)
                               +|.+|+ |++++...+ .+.+++.++|+.+++.+......+++..+|+.+++|.+..+.+....+++.++.
T Consensus        52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~  121 (462)
T TIGR00562        52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL  121 (462)
T ss_pred             ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence                     466788 688886655 488889999987765443333344443238888888776666555555554444


Q ss_pred             HHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHH
Q 014049          177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL  256 (431)
Q Consensus       177 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  256 (431)
                      .+.  +....   ..           ....+.|+.+|+++.. .+.+.+.+...+....+..++  +++|+..++..+..
T Consensus       122 ~~~--~~~~~---~~-----------~~~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~  182 (462)
T TIGR00562       122 RAG--MDFIR---PA-----------SPGKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ  182 (462)
T ss_pred             Hhh--hhhcc---CC-----------CCCCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence            322  11110   00           0123589999998653 333333232222222233332  34566655443322


Q ss_pred             HHhh-------h------------ccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEE
Q 014049          257 YNSS-------I------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (431)
Q Consensus       257 ~~~s-------~------------~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (431)
                      ....       +            ..+....+. +.+++||+++|+++|++.+.  .++|+++++|++|..+  +++ +.
T Consensus       183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~  257 (462)
T TIGR00562       183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT  257 (462)
T ss_pred             HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence            1110       0            001011122 56799999999999987553  2789999999999876  443 46


Q ss_pred             EEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCC-CCCCCCceEEEeCCCCCCC
Q 014049          317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFP  394 (431)
Q Consensus       317 V~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~  394 (431)
                      |++++|+++.||+||++ |...+..++..    ++.......+...+..+.+..+.++++ +........++.|....  
T Consensus       258 v~~~~g~~~~ad~VI~t~P~~~~~~ll~~----~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~--  331 (462)
T TIGR00562       258 LELDNGVTVETDSVVVTAPHKAAAGLLSE----LSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSK--  331 (462)
T ss_pred             EEECCCcEEEcCEEEECCCHHHHHHHhcc----cCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCC--
Confidence            77788889999999974 54443444321    222222222233566777878888776 33233445555554321  


Q ss_pred             CCCCeEEEEEec-CCCccCCCCcEEEEEEcC
Q 014049          395 EQVTSIRVLQLG-GNLAVCPLGMVSLDLLSP  424 (431)
Q Consensus       395 ~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~  424 (431)
                        .+.+.+...+ ..+..+|+|+.++.+.+.
T Consensus       332 --~~~~~~i~~s~~~p~~~p~g~~~l~~~~~  360 (462)
T TIGR00562       332 --FAILGCIFTSKLFPNRAPPGKTLLTAYIG  360 (462)
T ss_pred             --CceEEEEEEccccCCcCCCCcEEEEEEeC
Confidence              1233333333 356789999888876653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07233 hypothetical protein; Provisional

Probab=99.95  E-value=3.7e-25  Score=222.07  Aligned_cols=329  Identities=15%  Similarity=0.122  Sum_probs=192.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (431)
                      +|||||||++||+||..|+++|++|+|||+++++||++++++.+|                                   
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g-----------------------------------   45 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG-----------------------------------   45 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC-----------------------------------
Confidence            589999999999999999999999999999999999999987543                                   


Q ss_pred             CCCceeeecCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHHHHH
Q 014049          104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (431)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~  182 (431)
                          |.+|. |.++++. ...+.+++.+.|+...+.+......+.+  +|+.++++. ...+++...+++.++..+...+
T Consensus        46 ----~~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  117 (434)
T PRK07233         46 ----LPIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLGT-PLELLRFPHLSLIDKFRLGLLT  117 (434)
T ss_pred             ----cchhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCCC-HHHHHcCCCCCHHHHHHhHHHH
Confidence                23344 3454433 3367788888888665555443332322  455544432 2233343455555555433222


Q ss_pred             HHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhc
Q 014049          183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG  262 (431)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~  262 (431)
                      ...... .          ...++...++.+|+++...++..+.++...+ ...+..++  +++|+...+..+..+...  
T Consensus       118 ~~~~~~-~----------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~s~~~~~~~~~~~~~~--  181 (434)
T PRK07233        118 LLARRI-K----------DWRALDKVPAEEWLRRWSGEGVYEVFWEPLL-ESKFGDYA--DDVSAAWLWSRIKRRGNR--  181 (434)
T ss_pred             Hhhhhc-c----------cccccccccHHHHHHHhcCHHHHHHHHHHHH-hcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence            111110 0          0123456899999998654444444433211 11122222  345665544443322111  


Q ss_pred             cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCC
Q 014049          263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS  341 (431)
Q Consensus       263 ~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l  341 (431)
                      ........+.+|+||++.|+++|.+.++..|++|+++++|++|..+  +++++++. .+|+++.||+||++ |...+..+
T Consensus       182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l  258 (434)
T PRK07233        182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL  258 (434)
T ss_pred             ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence            0000011267899999999999999999999999999999999886  66665665 57889999999965 44444454


Q ss_pred             CCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCeEEEEEec-CCCccCCCCcEEEE
Q 014049          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG-GNLAVCPLGMVSLD  420 (431)
Q Consensus       342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~aP~G~~~~~  420 (431)
                      +..    ++.......+...+....+..+.+++++.+   .+.+.++....     +..-+...+ .++..+|+|+.+++
T Consensus       259 l~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~g~~~~~  326 (434)
T PRK07233        259 VPD----LPADVLARLRRIDYQGVVCMVLKLRRPLTD---YYWLNINDPGA-----PFGGVIEHTNLVPPERYGGEHLVY  326 (434)
T ss_pred             cCC----CcHHHHhhhcccCccceEEEEEEecCCCCC---CceeeecCCCC-----CcceEEEecccCCccccCCceEEE
Confidence            421    221111111222344555556667777642   23333222111     112223333 35667788888776


Q ss_pred             EEcCCC
Q 014049          421 LLSPLP  426 (431)
Q Consensus       421 i~~~~p  426 (431)
                      +....+
T Consensus       327 ~~~~~~  332 (434)
T PRK07233        327 LPKYLP  332 (434)
T ss_pred             EeeecC
Confidence            665544

>PLN02576 protoporphyrinogen oxidase

Probab=99.94  E-value=1.2e-24  Score=222.05  Aligned_cols=334  Identities=18%  Similarity=0.173  Sum_probs=200.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      .++||+|||||++||+||.+|+++ |++|+|||+++++||+++|++.+                                
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--------------------------------   58 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--------------------------------   58 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--------------------------------
Confidence            357999999999999999999999 99999999999999999997643                                


Q ss_pred             cccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccc-cceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                             +|.+|. ||+++...++.+..+.+.|+.+++.|... ...|++. +|+.+++|.+..+.+....+++.+|..+
T Consensus        59 -------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~  129 (496)
T PLN02576         59 -------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIRA  129 (496)
T ss_pred             -------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHHH
Confidence                   456788 68888776666666666688777665432 2345443 7888889887666666666776665543


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      ..-  .. .....          .....+.|+.+|+++. +.+.+.+.+...+....+..++  +++|+..++..+..+.
T Consensus       130 ~~~--~~-~~~~~----------~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~e  193 (496)
T PLN02576        130 GLG--AF-GWKRP----------PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNLE  193 (496)
T ss_pred             hHH--Hh-hccCC----------CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHHH
Confidence            211  11 11000          0113468999999975 4555554443332222234343  4466665554433221


Q ss_pred             hhhcc--------c----------------c-CCCccEEeecCCcchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCC
Q 014049          259 SSIGR--------F----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSG  312 (431)
Q Consensus       259 ~s~~~--------~----------------g-~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g  312 (431)
                      ...+.        .                . ......++++||+++|+++|++.   ++ ++|++|++|++|..+  ++
T Consensus       194 ~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~--~~  268 (496)
T PLN02576        194 KRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKN--DD  268 (496)
T ss_pred             HhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEEC--CC
Confidence            10000        0                0 00122567899999999998753   45 789999999999876  34


Q ss_pred             cEEEEEe--CCCc-EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC-CC------CCC
Q 014049          313 SYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KP------DLS  381 (431)
Q Consensus       313 ~~~gV~~--~~G~-~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~------~~~  381 (431)
                      ..+.|++  .+|+ ++.||+||++ |...+..++....   ++....+. ...+..+.++.+.+++++ ..      ...
T Consensus       269 ~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~---~~~~~~l~-~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~  344 (496)
T PLN02576        269 GGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKS---PAAADALP-EFYYPPVAAVTTSYPKEAVKRERLIDGPLE  344 (496)
T ss_pred             CcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccC---HHHHHHhc-cCCCCceEEEEEEEchHHcccccccCCCCC
Confidence            3123433  3554 6999999975 5544455442222   22222222 234556677777777753 22      112


Q ss_pred             ceEEEeCCCCCCCCCCCeEEEEEec-CCCccCCCCcEEEEEEcC
Q 014049          382 NFLVIFPPRSLFPEQVTSIRVLQLG-GNLAVCPLGMVSLDLLSP  424 (431)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~  424 (431)
                      .+..+.|+.. +   .+.+-+...+ ..+..+|+|..++.+.+.
T Consensus       345 ~~g~l~~~~~-~---~~~lg~~~~s~~~p~~~~~~~~~l~~~~~  384 (496)
T PLN02576        345 GFGQLHPRKQ-G---VKTLGTIYSSSLFPDRAPEGRVLLLNYIG  384 (496)
T ss_pred             ceEEEccCCC-C---CceEEEEeecCcCCCCCCCCCEEEEEEEC
Confidence            2333333321 1   1233334333 356788888876655443

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.94  E-value=1.6e-24  Score=218.68  Aligned_cols=331  Identities=15%  Similarity=0.166  Sum_probs=194.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      +|||||||++||+||..|+++|  ++|+|||+++++||+++|++.+                                  
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~----------------------------------   47 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD----------------------------------   47 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC----------------------------------
Confidence            6999999999999999999988  8999999999999999997643                                  


Q ss_pred             cCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCCh--------hhhhccCCCCh
Q 014049          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL  172 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~l~~  172 (431)
                           ++.+|+ |++.+...+ .+.+++.+.|+..+..+......+++. +|+.+.+|...        ...+..+.++.
T Consensus        48 -----g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~  120 (451)
T PRK11883         48 -----GFPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP  120 (451)
T ss_pred             -----CeEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence                 345677 576544433 577888999987654433212224443 67777666421        00001112221


Q ss_pred             HHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHH
Q 014049          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (431)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  252 (431)
                      .++...      ......         .......++|+.+|+++. .++...+.+...+....+..++  +++|+...+.
T Consensus       121 ~~~~~~------~~~~~~---------~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~  182 (451)
T PRK11883        121 IGKLRA------AADLRP---------PRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP  182 (451)
T ss_pred             HHHHHh------hCcccC---------CCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence            111110      001000         001224568999999863 4444443333222222233332  3455554444


Q ss_pred             HHHHHHhhhc-----------ccc-CCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC
Q 014049          253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA  320 (431)
Q Consensus       253 ~~~~~~~s~~-----------~~g-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~  320 (431)
                      .+..+....+           ... .....+.+++||++.|+++|++.+...  +|+++++|++|..+  ++. +.|+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~  257 (451)
T PRK11883        183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS  257 (451)
T ss_pred             HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence            3333221110           000 001225689999999999988755332  89999999999876  443 567778


Q ss_pred             CCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCe
Q 014049          321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS  399 (431)
Q Consensus       321 ~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (431)
                      +|+++.||+||++ |...+..++.  ++++.+..    +...+..+.+..+.+++++......+.+++++..  .  .+.
T Consensus       258 ~g~~~~~d~vI~a~p~~~~~~l~~--~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~--~--~~~  327 (451)
T PRK11883        258 NGGEIEADAVIVAVPHPVLPSLFV--APPAFALF----KTIPSTSVATVALAFPESATNLPDGTGFLVARNS--D--YTI  327 (451)
T ss_pred             CCCEEEcCEEEECCCHHHHHHhcc--ChhHHHHH----hCCCCCceEEEEEEeccccCCCCCceEEEecCCC--C--CcE
Confidence            9999999999975 4444444432  22222222    2334667778788888886323334556666431  1  222


Q ss_pred             EEEEEec-CCCccCCCCcEEEEEEcCCCCC
Q 014049          400 IRVLQLG-GNLAVCPLGMVSLDLLSPLPHQ  428 (431)
Q Consensus       400 i~v~~~~-~~~~~aP~G~~~~~i~~~~p~~  428 (431)
                      -.+...+ ..+..+|+|..++.++...|+.
T Consensus       328 ~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~  357 (451)
T PRK11883        328 TACTWTSKKWPHTTPEGKVLLRLYVGRPGD  357 (451)
T ss_pred             EEEEeEcCcCCCCCCCCcEEEEEecCCCCC
Confidence            3333334 3467899999999988876643

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.94  E-value=1.6e-24  Score=219.11  Aligned_cols=326  Identities=12%  Similarity=0.134  Sum_probs=192.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhC------CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY   96 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~------G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (431)
                      .+|||||||++||+||..|+++      |++|+|||+++++||+++|.+.+                             
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~-----------------------------   52 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK-----------------------------   52 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence            3799999999999999999996      37999999999999999997542                             


Q ss_pred             ccccccCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCC--------hhhhhcc
Q 014049           97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD  167 (431)
Q Consensus        97 ~~~~~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~  167 (431)
                                +|.+|+ |++++... ..+.+++.++|+++++.+..-...|++. +|...++|.+        ..+.++.
T Consensus        53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~  120 (463)
T PRK12416         53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS  120 (463)
T ss_pred             ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence                      356788 68877544 4577889999998776554433445443 5666666543        2223333


Q ss_pred             CCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhch
Q 014049          168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (431)
Q Consensus       168 ~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~  247 (431)
                      ..+++..|...      +......      .   ...+.+.|+.+|+++..-++..+.++... ....+..++  +++|+
T Consensus       121 ~~~~~~~~~~~------~~~~~~~------~---~~~~~~~sv~~~l~~~~~~~~~~~~~~p~-~~~~~~~~~--~~ls~  182 (463)
T PRK12416        121 TLVSTKGKIVA------LKDFITK------N---KEFTKDTSLALFLESFLGKELVERQIAPV-LSGVYSGKL--NELTM  182 (463)
T ss_pred             CcCCHHHHHHh------hhhhccC------C---CCCCCCCCHHHHHHHhcCHHHHHHHHHHH-hcccccCCc--ccccH
Confidence            33333222211      1111100      0   01134689999999753333333333321 122233332  33555


Q ss_pred             hhHHHHHHHHHhhhccc------------cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEE
Q 014049          248 RDGINRLALYNSSIGRF------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK  315 (431)
Q Consensus       248 ~~~~~~~~~~~~s~~~~------------g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~  315 (431)
                      ...+..+..+....+..            ......+.+++||+++|+++|++.+..  ++|+++++|++|..+  +++ +
T Consensus       183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~  257 (463)
T PRK12416        183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y  257 (463)
T ss_pred             HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence            44444443333221110            011122778999999999999886643  689999999999886  444 5


Q ss_pred             EEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC-CCCCceEEEeCCCCCC
Q 014049          316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-PDLSNFLVIFPPRSLF  393 (431)
Q Consensus       316 gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~  393 (431)
                      .|++.+|+++.||+||++ |...+.+++  .++++++.+.++    .+..+.+..+.++++.. .....+.+++|+..  
T Consensus       258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~--  329 (463)
T PRK12416        258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDEQLPADGTGFIVTENS--  329 (463)
T ss_pred             EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhcCCCCCceEEEeeCCC--
Confidence            677788889999999975 544445554  245555544332    34566777777876532 12233555666442  


Q ss_pred             CCCCCeEEEEEecC--CCccCCCCcEEEEEEc
Q 014049          394 PEQVTSIRVLQLGG--NLAVCPLGMVSLDLLS  423 (431)
Q Consensus       394 ~~~~~~i~v~~~~~--~~~~aP~G~~~~~i~~  423 (431)
                         ...+--+...+  -+..+|++..++.+.+
T Consensus       330 ---~~~~~~~~~~s~~~~~~~~~~~~l~~~~~  358 (463)
T PRK12416        330 ---DLHCDACTWTSRKWKHTSGKQKLLVRMFY  358 (463)
T ss_pred             ---CCeEEEEEeecCCCCCcCCCCeEEEEEEe
Confidence               11111122221  1235677776666554

>PRK07208 hypothetical protein; Provisional

Probab=99.93  E-value=1.4e-23  Score=213.18  Aligned_cols=325  Identities=13%  Similarity=0.149  Sum_probs=183.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      |+...||||||||++||+||..|+++|++|+|+|+++++||++.|...+                               
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~-------------------------------   49 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK-------------------------------   49 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC-------------------------------
Confidence            3567899999999999999999999999999999999999999997543                               


Q ss_pred             ccccCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (431)
                              ++.+|. |+++++..+ .+.+++.+.+..+.+...... .+++. +|+...+|.+..+.+.  .+++.++..
T Consensus        50 --------g~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~  116 (479)
T PRK07208         50 --------GNRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPRL-SRIYY-RGKFFDYPLKAFDALK--NLGLWRTAK  116 (479)
T ss_pred             --------CceEcc-CCceeccCCHHHHHHHHHhcCCCcccccccc-ceEEE-CCEEecCCcchhHHHH--hCCHhHHHH
Confidence                    345677 688776544 567777887753322222111 22232 6777778765333332  233333222


Q ss_pred             HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHH-HHhcCCCCcchhhhhhchhhHHHHH-
Q 014049          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLY-AIAMADYDQEVSEYVLKTRDGINRL-  254 (431)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~-  254 (431)
                      ..  ...+....            .....+.++.+|+++.. .+.+.+ ++.. ...+  |..++  +++|+..++.++ 
T Consensus       117 ~~--~~~~~~~~------------~~~~~~~s~~e~l~~~~-g~~~~~~~~~p~~~~~--~~~~~--~~~s~~~~~~~~~  177 (479)
T PRK07208        117 CG--ASYLKARL------------RPRKEEDSFEDWVINRF-GRRLYSTFFKGYTEKV--WGVPC--DEISADWAAQRIK  177 (479)
T ss_pred             HH--HHHHHHhc------------CCCCCCCCHHHHHHHhh-CHHHHHHHHHHhhhhh--hCCCh--HHCCChHHhCccc
Confidence            11  11111110            00123689999998632 333333 3321 2222  23332  345655433221 


Q ss_pred             --------HHHHhhh-c-------cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEE
Q 014049          255 --------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR  318 (431)
Q Consensus       255 --------~~~~~s~-~-------~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~  318 (431)
                              ...+... +       ..+.....+.||+||+++|+++|++.++..|++|+++++|++|..+ +++.++++.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~  256 (479)
T PRK07208        178 GLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVV  256 (479)
T ss_pred             CCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEE
Confidence                    1111110 0       0010012377899999999999999999999999999999999987 234344444


Q ss_pred             e--CCCc--EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCC
Q 014049          319 L--ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLF  393 (431)
Q Consensus       319 ~--~~G~--~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  393 (431)
                      .  .+|+  ++.||+||++ |...+..++.   ++++.......+...+..+.++.+.++++..  .....+.+++....
T Consensus       257 ~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~---~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~  331 (479)
T PRK07208        257 VNDTDGTEETVTADQVISSMPLRELVAALD---PPPPPEVRAAAAGLRYRDFITVGLLVKELNL--FPDNWIYIHDPDVK  331 (479)
T ss_pred             EEcCCCCEEEEEcCEEEECCCHHHHHHhcC---CCCCHHHHHHHhCCCcceeEEEEEEecCCCC--CCCceEEecCCCCc
Confidence            3  2454  5899999975 4333333332   1223222222222334455556666676532  11233344432211


Q ss_pred             CCCCCeEEEEEec-CCCccCCCCcE
Q 014049          394 PEQVTSIRVLQLG-GNLAVCPLGMV  417 (431)
Q Consensus       394 ~~~~~~i~v~~~~-~~~~~aP~G~~  417 (431)
                      .   ..  +..++ .++..+|+|+.
T Consensus       332 ~---~r--~~~~~~~~~~~~p~g~~  351 (479)
T PRK07208        332 V---GR--LQNFNNWSPYLVPDGRD  351 (479)
T ss_pred             c---ce--ecccccCCcccCCCCCc
Confidence            1   11  22333 25678999983

>PLN02612 phytoene desaturase

Probab=99.93  E-value=1.3e-23  Score=215.71  Aligned_cols=331  Identities=13%  Similarity=0.141  Sum_probs=199.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      ..||+|||+|++||+||.+|+++|++|+|+|+++++||++.+++..                                  
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~----------------------------------  138 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE----------------------------------  138 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence            4689999999999999999999999999999999999999997531                                  


Q ss_pred             cCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeec-cCCcee--e----cCCC---hhhhhc-cCC
Q 014049          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS  169 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~-~~g~~~--~----~p~~---~~~~~~-~~~  169 (431)
                          .++.+|. |+++++.. ..+.+++.+.|+.+.++|......+.+. .++...  .    .|..   ..++++ ...
T Consensus       139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~  213 (567)
T PLN02612        139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM  213 (567)
T ss_pred             ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence                2345677 68877553 3678889999998777776544433221 112222  1    2221   112221 233


Q ss_pred             CChHHHHHHHH-HHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHHHH-hcCCCCcchhhhhhc
Q 014049          170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLYAI-AMADYDQEVSEYVLK  246 (431)
Q Consensus       170 l~~~~k~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~~-~~~~~~~~~~~~~~s  246 (431)
                      +++.+|..+.. ++...   ..       ......++.+.|+.+|+++.+.++.+.+ ++...+ ++  +..++  +++|
T Consensus       214 ls~~~kl~~~~~~~~~~---~~-------~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~--~~~~p--~~~S  279 (567)
T PLN02612        214 LTWPEKIKFAIGLLPAI---VG-------GQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKAL--NFINP--DELS  279 (567)
T ss_pred             CCHHHHHHHHHhhhHHh---cc-------cchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHh--cCCCH--HHhh
Confidence            44444443221 11110   00       0011234567899999999999987775 333221 22  22232  3456


Q ss_pred             hhhHHHHHHHHHhhhccccCCCccEEeecCCc-chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEE
Q 014049          247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI  325 (431)
Q Consensus       247 ~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i  325 (431)
                      +...+..+..++..  ..+   ....++.|+. ..|+++|++.++.+|++|++|++|++|..+ +++++++|++.+|+++
T Consensus       280 ~~~~l~~l~~~l~~--~~g---s~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~-~~g~v~~v~~~~G~~~  353 (567)
T PLN02612        280 MQCILIALNRFLQE--KHG---SKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELN-DDGTVKHFLLTNGSVV  353 (567)
T ss_pred             HHHHHHHHHHHHhc--cCC---ceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEEC-CCCcEEEEEECCCcEE
Confidence            66555554444331  222   1255677764 689999999998999999999999999986 2677778888899999


Q ss_pred             EeCEEEEC-CCCCCCCCCCCch--hhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCeEEE
Q 014049          326 LSHKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRV  402 (431)
Q Consensus       326 ~Ad~VI~~-p~~~~~~l~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  402 (431)
                      .||+||++ |...+..++....  .++++.++.    .....+.+..+.+++++.....++  ++....     ...++.
T Consensus       354 ~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~----l~~~~v~~v~l~~dr~~~~~~~~~--~~~~~~-----~~~~~~  422 (567)
T PLN02612        354 EGDVYVSATPVDILKLLLPDQWKEIPYFKKLDK----LVGVPVINVHIWFDRKLKNTYDHL--LFSRSP-----LLSVYA  422 (567)
T ss_pred             ECCEEEECCCHHHHHHhCcchhcCcHHHHHHHh----cCCCCeEEEEEEECcccCCCCCce--eecCCC-----Cceeeh
Confidence            99999975 5444444432111  122332222    224557777777899874333332  233221     113333


Q ss_pred             EEecCCCccCCCCcEEEEEE
Q 014049          403 LQLGGNLAVCPLGMVSLDLL  422 (431)
Q Consensus       403 ~~~~~~~~~aP~G~~~~~i~  422 (431)
                      .........+|+|+.++.+.
T Consensus       423 d~S~~~~~~~~~~~~ll~~~  442 (567)
T PLN02612        423 DMSTTCKEYYDPNKSMLELV  442 (567)
T ss_pred             hhhhcchhhcCCCCeEEEEE
Confidence            32222223456667665543

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.93  E-value=3e-23  Score=209.27  Aligned_cols=293  Identities=17%  Similarity=0.173  Sum_probs=181.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (431)
                      +|+|||||++||+||.+|+++|++|+|||+++++||+++|+...                                    
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------   44 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------   44 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence            58999999999999999999999999999999999999997421                                    


Q ss_pred             CCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeee-ccCCcee--ecC---CCh---hhhhc-cCCCCh
Q 014049          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL  172 (431)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~-~~~g~~~--~~p---~~~---~~~~~-~~~l~~  172 (431)
                        .++.+|. |++++... ..+.+++.++|+.+.+.|......|.. ..++...  .+|   ...   .++++ ...+++
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (453)
T TIGR02731        45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW  121 (453)
T ss_pred             --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence              1345677 57776543 367888999998776666543333321 1122222  112   111   11121 223455


Q ss_pred             HHHHHHHHHH-HHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHH--HhcCCCCcchhhhhhchhh
Q 014049          173 MEKNQLMRFF-KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYA--IAMADYDQEVSEYVLKTRD  249 (431)
Q Consensus       173 ~~k~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~s~~~  249 (431)
                      .++..+..-+ ......          .+...++.+.|+.+|+++.+.++.+.+.+...  .++.  ..++  +++|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~--~~~p--~~~S~~~  187 (453)
T TIGR02731       122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN--FINP--DELSMTV  187 (453)
T ss_pred             HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC--CCCH--HHHHHHH
Confidence            5554433211 111000          01123456789999999999998877543321  2222  2232  3467766


Q ss_pred             HHHHHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-----
Q 014049          250 GINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----  323 (431)
Q Consensus       250 ~~~~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----  323 (431)
                      ++..+..++.  ..++.   ...+..|| ++.++++|.+.++..|++|++|++|++|..+ +++++++|++.+|+     
T Consensus       188 ~~~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~  261 (453)
T TIGR02731       188 VLTALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRF  261 (453)
T ss_pred             HHHHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCcee
Confidence            6655554442  12221   13345555 5789999999999999999999999999875 26778889887776     


Q ss_pred             EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC
Q 014049          324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (431)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  377 (431)
                      ++.||.||++ |...+.+++. ...+-....+.+.+ .....+.+..+.+++++.
T Consensus       262 ~~~a~~VI~a~p~~~~~~lL~-~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~  314 (453)
T TIGR02731       262 EVTADAYVSAMPVDIFKLLLP-QPWKQMPFFQKLNG-LEGVPVINVHIWFDRKLT  314 (453)
T ss_pred             EEECCEEEEcCCHHHHHhhCc-hhhhcCHHHHHhhc-CCCCcEEEEEEEEccccC
Confidence            7999999964 4444555542 11100111122222 235577888888999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.93  E-value=1.4e-23  Score=204.85  Aligned_cols=331  Identities=16%  Similarity=0.158  Sum_probs=208.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      .|+|||||++||+||++|+++|  .+|+|||+.+++||..+|+..+                                  
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~----------------------------------   47 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID----------------------------------   47 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC----------------------------------
Confidence            5899999999999999999999  9999999999999999998654                                  


Q ss_pred             cCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHHH
Q 014049          102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR  180 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~  180 (431)
                           +|.+|. ||+.++.. ..+++++.++|+++.+.+......|++. +|+++++|...  ++..+.+...+...+.+
T Consensus        48 -----G~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~  118 (444)
T COG1232          48 -----GFLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR  118 (444)
T ss_pred             -----CEEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence                 466788 68776555 5788999999999988877655556554 88999999864  44433332212333333


Q ss_pred             HHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhh
Q 014049          181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS  260 (431)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s  260 (431)
                      ++........           .....+.++.+|+++..-.+-+..++. .+.-.-|..+.  +++|+...+..+..-...
T Consensus       119 ~~~~~~~~~~-----------~~~~~d~sv~~f~r~~fG~ev~~~~~~-pll~giy~~~~--~~LS~~~~~p~~~~~e~~  184 (444)
T COG1232         119 ALQEFIRPKS-----------WEPKQDISVGEFIRRRFGEEVVERFIE-PLLEGIYAGDA--DKLSAAAAFPILARAERK  184 (444)
T ss_pred             HHHhhhcccC-----------CCCCCCcCHHHHHHHHHhHHHHHHHHH-HHhhchhcCCH--HHhhHHHhcchhhhhhhh
Confidence            3322211100           123457899999986332222222322 11111133222  346665322222221111


Q ss_pred             hccc-------cC-----CCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeC
Q 014049          261 IGRF-------QN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (431)
Q Consensus       261 ~~~~-------g~-----~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad  328 (431)
                      .+..       +.     ..+.+.+++||+++++++|++.+...   |+++++|++|..+  ... .++.+.+|+.+.||
T Consensus       185 ~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~D  258 (444)
T COG1232         185 YGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITAD  258 (444)
T ss_pred             hcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEcc
Confidence            1110       00     01237789999999999999877665   9999999999886  232 35556789999999


Q ss_pred             EEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCC-CCCCCCceEEEeCCCCCCCCCCCeEEEEE-e
Q 014049          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ-L  405 (431)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~v~~-~  405 (431)
                      .||++ |.+.+..++..  ..+..   .. .......++++++.++.+ .+..++.+.+.++....      .+-.+. +
T Consensus       259 ~VI~t~p~~~l~~ll~~--~~~~~---~~-~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~------~~~a~~~~  326 (444)
T COG1232         259 GVISTAPLPELARLLGD--EAVSK---AA-KELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP------YILAITFH  326 (444)
T ss_pred             eEEEcCCHHHHHHHcCC--cchhh---hh-hhccccceEEEEEEeccccccCCCCceEEEEecCCC------cceeEEEe
Confidence            99975 65555665532  11111   11 122344567777777664 33344667777776521      122222 3


Q ss_pred             c-CCCccCCCCcEEEEEEcCCCCCC
Q 014049          406 G-GNLAVCPLGMVSLDLLSPLPHQM  429 (431)
Q Consensus       406 ~-~~~~~aP~G~~~~~i~~~~p~~~  429 (431)
                      | .-+-..|+|+.++++..--|-+.
T Consensus       327 S~~~p~~~p~g~~ll~~~~~~~g~~  351 (444)
T COG1232         327 SNKWPHEAPEGKTLLRVEFGGPGDE  351 (444)
T ss_pred             cccCCCCCCCCcEEEEEEeecCCCc
Confidence            3 36789999999999988766554

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.92  E-value=8.1e-24  Score=198.91  Aligned_cols=151  Identities=25%  Similarity=0.314  Sum_probs=101.8

Q ss_pred             cEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC--CCCCCCCCCchh
Q 014049          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSLASSHQ  347 (431)
Q Consensus       270 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~--~~~~~l~~~~~~  347 (431)
                      .+.||.|||++++.++++.++++|++|.+++.|++|..+  +|+++||+++||++++++.||+|..  .++.+|+.  ..
T Consensus       255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp--~e  330 (561)
T KOG4254|consen  255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP--GE  330 (561)
T ss_pred             cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC--Cc
Confidence            478999999999999999999999999999999999998  8999999999999999999998754  45556653  22


Q ss_pred             hhhhhh--hhhcccCCCC--eEEEEEEEeCCCCCCCCCceEE---------------EeCCCCCCCCCCCeEEEEEecC-
Q 014049          348 QLQESF--QAFSLSDNKG--KVARGICITRSSLKPDLSNFLV---------------IFPPRSLFPEQVTSIRVLQLGG-  407 (431)
Q Consensus       348 ~l~~~~--~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~i~v~~~~~-  407 (431)
                      .||+..  +++.......  +.....+.=+.. .....||+.               +-.+..-.....|.|++.++|+ 
T Consensus       331 ~LPeef~i~q~d~~spv~k~~~psFl~~~~~~-~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~l  409 (561)
T KOG4254|consen  331 ALPEEFVIQQLDTVSPVTKDKLPSFLCLPNTK-SLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSL  409 (561)
T ss_pred             cCCchhhhhhcccccccccccCcceeecCCCC-CCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEeccccc
Confidence            355543  1221111111  111122211111 111112221               1111111123478999999996 


Q ss_pred             CCccCCCCcEEEEEEcCC
Q 014049          408 NLAVCPLGMVSLDLLSPL  425 (431)
Q Consensus       408 ~~~~aP~G~~~~~i~~~~  425 (431)
                      |++.+|+|+.++++.+..
T Consensus       410 Dptlappg~Hvl~lf~~~  427 (561)
T KOG4254|consen  410 DPTLAPPGKHVLHLFTQY  427 (561)
T ss_pred             CCCcCCCCceEEEEeccC
Confidence            999999999999988764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.91  E-value=3.2e-22  Score=201.64  Aligned_cols=268  Identities=18%  Similarity=0.193  Sum_probs=171.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (431)
                      +|+|||||++||+||..|+++|++|+|+|+++++||+++++...                                    
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------   44 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------   44 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence            58999999999999999999999999999999999999997421                                    


Q ss_pred             CCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCcee--------ecC-CChhhhhccCCCChH
Q 014049          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLC--------SVP-DSRAAIFKDKSLGLM  173 (431)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~--------~~p-~~~~~~~~~~~l~~~  173 (431)
                        .+|.+|. |+++++... .+.+++.+.|+.+.+.+......|.. .+++..        ..| .....+++.+.++..
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~  120 (474)
T TIGR02732        45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV  120 (474)
T ss_pred             --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence              2456777 688876543 67778888898765544432222322 133321        123 122355666778888


Q ss_pred             HHHHHHHHHHH---HHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhH
Q 014049          174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (431)
Q Consensus       174 ~k~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (431)
                      +|..+...+..   .+....-.    ...+......+.|+.+|+++++.++.+.+.+...+....+..++  +++|+..+
T Consensus       121 dklr~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~  194 (474)
T TIGR02732       121 DKLRNALALGTSPIVRGLVDYD----GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM  194 (474)
T ss_pred             HHHHHHHHhhhhHHHhhccccc----hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence            88765543311   11110000    00011223456899999999998876444333222222222332  35677666


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEeCcceeEEEEecC-CC--cEEEEEeCCC---c
Q 014049          251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q  323 (431)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~~~G---~  323 (431)
                      +..+..+. . +..+   +-..+++||.++ +.+.|.+.+++.|++|+++++|++|..+.. ++  ++++|++.+|   +
T Consensus       195 ~~~~~~~~-~-~~~~---s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~  269 (474)
T TIGR02732       195 LTIFMLFA-A-KTEA---SKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK  269 (474)
T ss_pred             HHHHHHHH-h-CCCc---ceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence            55444322 2 2333   126789999876 778899999999999999999999988621 12  3778877654   5


Q ss_pred             EEEeCEEEEC-CCCCCCCCC
Q 014049          324 DILSHKLVLD-PSFTVPGSL  342 (431)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~l~  342 (431)
                      ++.||+||++ |.+....|+
T Consensus       270 ~~~aD~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       270 VIKADAYVAACDVPGIKRLL  289 (474)
T ss_pred             EEECCEEEECCChHHHHhhC
Confidence            6899999975 555445655

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02487 zeta-carotene desaturase

Probab=99.91  E-value=6e-22  Score=201.38  Aligned_cols=271  Identities=17%  Similarity=0.204  Sum_probs=172.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      ...+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...                                 
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~---------------------------------  120 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK---------------------------------  120 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence            34699999999999999999999999999999999999999997421                                 


Q ss_pred             ccCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCcee----ecC--CC---hhhhhccCCC
Q 014049          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL  170 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~----~~p--~~---~~~~~~~~~l  170 (431)
                           .++.+|. |+++++.. ..+.+++.+.|+.+.+.+......|. ..+|...    .+|  ..   ...+++...+
T Consensus       121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~-~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L  193 (569)
T PLN02487        121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFV-NKGGDVGELDFRFPVGAPLHGIKAFLTTNQL  193 (569)
T ss_pred             -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEE-ecCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence                 2345677 68877543 36888899999976655543222232 2234331    122  11   1144455667


Q ss_pred             ChHHHHHHHHHH--H-HHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhch
Q 014049          171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (431)
Q Consensus       171 ~~~~k~~l~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~  247 (431)
                      ++.+|..+..-+  . .+.....  +.  ...+......+.|+.+|+++++.++.+.+-+...+....+..++  +++|+
T Consensus       194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA  267 (569)
T PLN02487        194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA  267 (569)
T ss_pred             CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence            777776652211  0 0011000  00  00011223456899999999888875444333322222233332  45677


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCcch-HHHHHHHHHHhcCcEEEeCcceeEEEEecC-CC--cEEEEEe---C
Q 014049          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A  320 (431)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~-l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-~g--~~~gV~~---~  320 (431)
                      ..++..+..+.  ....+   +-.+|++||.++ |++.+++.++..||+|+++++|++|..+.+ ++  ++++|++   .
T Consensus       268 ~~~~~vl~~~~--~~~~~---~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~  342 (569)
T PLN02487        268 RCMLTIFSLFA--TKTEA---SLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT  342 (569)
T ss_pred             HHHHHHHHHHh--hcCCc---ceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence            66555553221  11111   126799999995 999999999999999999999999998721 22  3788988   3


Q ss_pred             CCcEEEeCEEEEC-CCCCCCCCC
Q 014049          321 SGQDILSHKLVLD-PSFTVPGSL  342 (431)
Q Consensus       321 ~G~~i~Ad~VI~~-p~~~~~~l~  342 (431)
                      +++++.||.||++ |...+.+|+
T Consensus       343 ~~~~~~aD~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        343 EKEIVKADAYVAACDVPGIKRLL  365 (569)
T ss_pred             CceEEECCEEEECCCHHHHHHhC
Confidence            4557899999975 544445655

>PLN02268 probable polyamine oxidase

Probab=99.87  E-value=7.3e-21  Score=190.95  Aligned_cols=273  Identities=13%  Similarity=0.119  Sum_probs=158.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (431)
                      +|||||||++||+||..|.++|++|+|||+++++|||++|.+..                                    
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~------------------------------------   45 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF------------------------------------   45 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC------------------------------------
Confidence            79999999999999999999999999999999999999996432                                    


Q ss_pred             CCCceeeecCCCeEEee---CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH-
Q 014049          104 HPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM-  179 (431)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~-  179 (431)
                         ++.+|+ |++++..   ..++.+++.+.|++.+...  .+..+.+..+...+.+...  .   ...++......+. 
T Consensus        46 ---g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~  114 (435)
T PLN02268         46 ---GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDM--D---GNQVPQELVTKVGE  114 (435)
T ss_pred             ---CcccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecC--C---CCCCCHHHHHHHHH
Confidence               345688 6888853   2357788888888543211  1111111101010000000  0   0011111111222 


Q ss_pred             ---HHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCC-C------hhHHHHHHHHH-hc-CCCCcchhhhhhch
Q 014049          180 ---RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-P------HKIKSIVLYAI-AM-ADYDQEVSEYVLKT  247 (431)
Q Consensus       180 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~-~------~~l~~~~~~~~-~~-~~~~~~~~~~~~s~  247 (431)
                         +++..+....            .....+.|+.+|++++.. .      ...+.++.+.+ .+ .-+..++  +++|+
T Consensus       115 ~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls~  180 (435)
T PLN02268        115 TFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTISL  180 (435)
T ss_pred             HHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCch
Confidence               2222211110            012346788888765421 1      12223322111 00 0122222  22333


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEe
Q 014049          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS  327 (431)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A  327 (431)
                      ..       +.......|    ...++.+|++.|+++|++     |..|+++++|++|..+  ++. +.|++.+|+++.|
T Consensus       181 ~~-------~~~~~~~~g----~~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~a  241 (435)
T PLN02268        181 KS-------WDQEELLEG----GHGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTFVA  241 (435)
T ss_pred             hh-------cCCccccCC----CceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEEEc
Confidence            21       000000012    124678899999998854     5579999999999876  343 4677788989999


Q ss_pred             CEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          328 HKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       328 d~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      |+||++ |...+......+.|+||+.+....+...++.+.|.++.++++|
T Consensus       242 d~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~f  291 (435)
T PLN02268        242 DAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVF  291 (435)
T ss_pred             CEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCC
Confidence            999964 6555443323456778776666555556888999999999885

>PLN02676 polyamine oxidase

Probab=99.86  E-value=3.3e-20  Score=187.23  Aligned_cols=282  Identities=11%  Similarity=0.072  Sum_probs=160.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      ..+||||||||++||+||..|+++|. +|+|||+++++||++.+.+..                                
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~--------------------------------   72 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFA--------------------------------   72 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCC--------------------------------
Confidence            46899999999999999999999998 699999999999999986542                                


Q ss_pred             cccCCCCceeeecCCCeEEee-----CchHHHHHHhcCcccccc-cccccceeeeccCCceeecCCChhhhhccCCCChH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLM  173 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~-----~~~~~~~l~~~~~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~  173 (431)
                             ++.+|+ |++++..     ...+.+++.+.|+..+.. +... ...++..+|+..  +.   +..      ..
T Consensus        73 -------g~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~------~~  132 (487)
T PLN02676         73 -------GVSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVV------QK  132 (487)
T ss_pred             -------CeEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHH------HH
Confidence                   345677 5787742     346778888888765421 2211 122232244433  10   100      00


Q ss_pred             HHHHHHHHHHHHHcccCCCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHhcCCCCcchhhhhhchhhH
Q 014049          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (431)
Q Consensus       174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (431)
                      -...+..+.+.+.......    .    ..++.+.++  .+++.... ....... ..+......+..++  .++|+...
T Consensus       133 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~~  201 (487)
T PLN02676        133 SMKVADASDEFGENLSISL----S----AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKNT  201 (487)
T ss_pred             HHHHHHHHHHHHHHHHHhh----c----ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhhc
Confidence            0011111111111111000    0    012234444  33333222 1211111 11111111011111  12232221


Q ss_pred             HHHHHHHHhhhccccCCCccEEee--cCCcchHHHHHHHHHHh------cCcEEEeCcceeEEEEecCCCcEEEEEeCCC
Q 014049          251 INRLALYNSSIGRFQNALGALIYP--IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (431)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p--~gG~~~l~~al~r~~~~------~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G  322 (431)
                      +.     ......+|   +..++.  +||++.|+++|++.+..      .+.+|+||++|++|..+  ++. +.|++.+|
T Consensus       202 ~~-----~~~~~~~g---~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~G  270 (487)
T PLN02676        202 EP-----NPTFVDFG---EDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTEDG  270 (487)
T ss_pred             Cc-----ccccccCC---CceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECCC
Confidence            00     00111122   112343  68999999999875532      23689999999999886  343 56888899


Q ss_pred             cEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      ++++||+||++ |...+......++|+||..+....+...++.+.|.++.++++|
T Consensus       271 ~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~F  325 (487)
T PLN02676        271 SVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKF  325 (487)
T ss_pred             CEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCC
Confidence            99999999975 5555443223578889987766666667899999999999985

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.86  E-value=5.3e-20  Score=183.78  Aligned_cols=276  Identities=16%  Similarity=0.159  Sum_probs=168.6

Q ss_pred             HHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccCCCCceeeecCCC
Q 014049           36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP  115 (431)
Q Consensus        36 ~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~Gp  115 (431)
                      +||.+|+++|++|+|||+++++||+++|++.+++                                     .+.+|. |+
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~   42 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ   42 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence            5899999999999999999999999999875431                                     123677 68


Q ss_pred             eEEeeC-chHHHHHHhcCcccccccccccceeeeccCCce-------eecCCC-hhhhhccCCCChHHHHHHHHHHHHHH
Q 014049          116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-------CSVPDS-RAAIFKDKSLGLMEKNQLMRFFKLVQ  186 (431)
Q Consensus       116 ~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~-------~~~p~~-~~~~~~~~~l~~~~k~~l~~~~~~~~  186 (431)
                      +++... ..+.+++.++|++....+.. ....++..++..       .+.|.. ...+.....+++.++..+.+++..+.
T Consensus        43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  121 (419)
T TIGR03467        43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR  121 (419)
T ss_pred             EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence            877653 46788888899877655421 121222212221       111221 11223445677777777766554433


Q ss_pred             cccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccC
Q 014049          187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN  266 (431)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~  266 (431)
                      ...            ..++.+.|+.+|++++..++.+.+.+...+....+..++  +++|+..++..+..   .+.....
T Consensus       122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~  184 (419)
T TIGR03467       122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA  184 (419)
T ss_pred             hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence            211            123457899999999888877776444322121133333  34555544333221   1111111


Q ss_pred             CCccEEeecCCcchHH-HHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCC
Q 014049          267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS  344 (431)
Q Consensus       267 ~~~~~~~p~gG~~~l~-~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~  344 (431)
                       ...+.||+||++++. ++|++.+++.|++|++|++|++|..+  +++++.+...+|+++.||+||++ |...+.+++..
T Consensus       185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~  261 (419)
T TIGR03467       185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLLPG  261 (419)
T ss_pred             -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhCCC
Confidence             112789999988776 55888888899999999999999987  45443333357888999999975 55444555421


Q ss_pred             chhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       345 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                        +...+   .+ +...+..+.+..+.+++++
T Consensus       262 --~~~~~---~l-~~~~~~~~~~v~l~~~~~~  287 (419)
T TIGR03467       262 --EDLGA---LL-TALGYSPITTVHLRLDRAV  287 (419)
T ss_pred             --chHHH---HH-hhcCCcceEEEEEEeCCCc
Confidence              11222   22 2224556677777788886

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02529 lysine-specific histone demethylase 1

Probab=99.86  E-value=5.6e-20  Score=190.66  Aligned_cols=277  Identities=14%  Similarity=0.116  Sum_probs=166.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      ...||+|||||++||+||..|+++|++|+|||+++++||++.|....+                                
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~--------------------------------  206 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR--------------------------------  206 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence            467999999999999999999999999999999999999999976421                                


Q ss_pred             ccCCCCceeeecCCCeEEeeCc--hHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (431)
                         ....+.+|+ |++|+....  ++..+..+.|+.-+    ..+..+ ++..+|.......+  .     .+   + ..
T Consensus       207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~-----~~---~-~~  267 (738)
T PLN02529        207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--S-----NI---E-FI  267 (738)
T ss_pred             ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--h-----hH---H-HH
Confidence               001246788 699886543  46666667776432    112211 23335543311110  0     00   0 11


Q ss_pred             HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHhcCCCCcchhhhhhchhhHH
Q 014049          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI  251 (431)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~  251 (431)
                      +.+++..+.......         ...+.+.|+.+|++++.      +++..+.++.+.+....+....+   ++.    
T Consensus       268 ~~~~l~~~~~l~~~~---------~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~---~s~----  331 (738)
T PLN02529        268 FNKLLDKVTELRQIM---------GGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC---LSD----  331 (738)
T ss_pred             HHHHHHHHHHHHHhc---------ccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC---hHH----
Confidence            122222222111100         01244678999988643      45555555544321111111100   111    


Q ss_pred             HHHHHHHhhhc-cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEE
Q 014049          252 NRLALYNSSIG-RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (431)
Q Consensus       252 ~~~~~~~~s~~-~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~V  330 (431)
                      ..+..+....+ .++   +...++.||++.|+++|++     +..|+||++|++|..+  ++. +.|+ .+++++.||+|
T Consensus       332 LSl~~~~~~~~~e~~---G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~V  399 (738)
T PLN02529        332 LSAAYWDQDDPYEMG---GDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMV  399 (738)
T ss_pred             hhhhHhhhccccccC---CceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEE
Confidence            11122222111 112   3356789999999999875     2359999999999986  333 4565 35678999999


Q ss_pred             EEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       331 I~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      |++ |...+.+....++|+||+.+....+...++.+.|.++.++++|
T Consensus       400 IVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~F  446 (738)
T PLN02529        400 LCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVF  446 (738)
T ss_pred             EECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCcc
Confidence            976 5544443223467888877666656667899999999999985

>PLN02568 polyamine oxidase

Probab=99.85  E-value=1.8e-19  Score=183.25  Aligned_cols=296  Identities=9%  Similarity=0.046  Sum_probs=164.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCC-----CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccc
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVE   92 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G-----~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (431)
                      +++...||||||||++||+||.+|+++|     ++|+|||+++++||+++|++..                         
T Consensus         1 ~~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~-------------------------   55 (539)
T PLN02568          1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG-------------------------   55 (539)
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC-------------------------
Confidence            3556689999999999999999999988     9999999999999999997643                         


Q ss_pred             ccccccccccCCCCceeeecCCCeEEee--CchHHHHHHhcCccccc-ccccccc----eeeeccCCceeecCCChhhhh
Q 014049           93 ISNYASRLLSQHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYL-EFKSIDA----TFMLDADAKLCSVPDSRAAIF  165 (431)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~~~~~~~-~f~~~~~----~~~~~~~g~~~~~p~~~~~~~  165 (431)
                                    ++.+|+ |++++..  ...+.+++.+.|+.... .|...+.    ...+..+|..  ++.   ++.
T Consensus        56 --------------g~~~d~-G~~~~~g~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~---~~~  115 (539)
T PLN02568         56 --------------GERIEM-GATWIHGIGGSPVYKIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFE--VDP---SIV  115 (539)
T ss_pred             --------------CeEEec-CCceeCCCCCCHHHHHHHHhCCccccCcceecccccccceEEccCCcC--CCH---HHH
Confidence                          345777 6887753  34777888888875432 2221111    1112223321  110   000


Q ss_pred             ccCCCChHHHHHHHHHHHHHHcccCCCcc---cc--ccccccc-c---ccCCcHHHHHHhcCCChhHHHHHHHH---Hhc
Q 014049          166 KDKSLGLMEKNQLMRFFKLVQGHLSLDES---EE--NNVRISE-E---DLDSPFAEFLTKMKLPHKIKSIVLYA---IAM  233 (431)
Q Consensus       166 ~~~~l~~~~k~~l~~~~~~~~~~~~~~~~---~~--~~~~~~~-~---~~~~s~~~~l~~~~~~~~l~~~~~~~---~~~  233 (431)
                      .      .-...+..++..+.........   .+  ....... .   -.+.++.+|+++.-     ..++...   ...
T Consensus       116 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~Sl~~fl~~~l-----~~~~~~~~~p~~~  184 (539)
T PLN02568        116 E------SISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGGSVGSFLRRGL-----DAYWDSVSADEQI  184 (539)
T ss_pred             H------HHHHHHHHHHHHhhcccccccccccccccccchhccchhccCCCCcHHHHHHHHH-----HHHHhhcccchhh
Confidence            0      0011122222222211000000   00  0000000 0   12347888877410     0000000   000


Q ss_pred             CCCCcchhhhhhchhhHHHHHHHHHh-----------hh---ccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeC
Q 014049          234 ADYDQEVSEYVLKTRDGINRLALYNS-----------SI---GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLR  299 (431)
Q Consensus       234 ~~~~~~~~~~~~s~~~~~~~~~~~~~-----------s~---~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~  299 (431)
                      ..+..+.  .+++....+..+..+..           +.   ..+...+|..+++.||++.|+++|++.+  .++.|+++
T Consensus       185 ~~~~~~~--~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L--~~~~I~ln  260 (539)
T PLN02568        185 KGYGGWS--RKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVL--PPGTIQLG  260 (539)
T ss_pred             ccccchh--HHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhC--CCCEEEeC
Confidence            0000000  00111111111111110           00   1111112346789999999999998754  35689999


Q ss_pred             cceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCC----CCchhhhhhhhhhhcccCCCCeEEEEEEEeCC
Q 014049          300 MPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----ASSHQQLQESFQAFSLSDNKGKVARGICITRS  374 (431)
Q Consensus       300 ~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~  374 (431)
                      ++|++|..+  ++. +.|++++|+++.||+||++ |...+.+-.    ..++|+||+.+....+...++.+.|.++.+++
T Consensus       261 ~~V~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~  337 (539)
T PLN02568        261 RKVTRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSP  337 (539)
T ss_pred             CeEEEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecC
Confidence            999999886  443 5677889999999999975 554444211    13678898876665566678899999999988


Q ss_pred             CC
Q 014049          375 SL  376 (431)
Q Consensus       375 ~~  376 (431)
                      +|
T Consensus       338 ~f  339 (539)
T PLN02568        338 RP  339 (539)
T ss_pred             CC
Confidence            75

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.84  E-value=3e-19  Score=186.06  Aligned_cols=280  Identities=13%  Similarity=0.117  Sum_probs=163.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      ...||+|||||++||+||..|++.|++|+|+|+++++||++.+++..+.                               
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~-------------------------------  285 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD-------------------------------  285 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence            3579999999999999999999999999999999999999999876431                               


Q ss_pred             ccCCCCceeeecCCCeEEeeC--chHHHHHHhcCccccccccccccee-eeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049          101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~--~~~~~~l~~~~~~~~~~f~~~~~~~-~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (431)
                          .-.+.+|+ |++++...  ..+..++.+.|+..+    .+...+ ++..+|+.+....+          ...+ ..
T Consensus       286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~----~~~~~~~~~~~dG~~~~~~~~----------~~v~-~~  345 (808)
T PLN02328        286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLH----KVRDICPLYLPDGKAVDAEID----------SKIE-AS  345 (808)
T ss_pred             ----CcceeccC-CceeecCCCccHHHHHHHHcCCceE----ecCCCceEEeCCCcCcchhhh----------hhHH-HH
Confidence                01235677 68887543  256667777886432    111211 22235543321100          0001 22


Q ss_pred             HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhcCCCCcchhhhhhchhhHH
Q 014049          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI  251 (431)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~  251 (431)
                      +.+++..+.......   ..    .....+.|+.++++++      ..++..+.++.+.++..-+....   .+   ..+
T Consensus       346 f~~lL~~~~klr~~~---~~----~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs---~l---s~L  412 (808)
T PLN02328        346 FNKLLDRVCKLRQAM---IE----EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANAS---LM---SNL  412 (808)
T ss_pred             HHHHHHHHHHHHHhh---hh----cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchh---hH---HHH
Confidence            223333322111100   00    0112356888888743      23444444443322211111100   00   001


Q ss_pred             HHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE
Q 014049          252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (431)
Q Consensus       252 ~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (431)
                       .+..+.... .+ ...+...+..||++.|+++|++.+   +  |+++++|++|..+  ++. +.| +.+|++++||+||
T Consensus       413 -Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dg-V~V-~~~G~~~~AD~VI  480 (808)
T PLN02328        413 -SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDG-VIV-YAGGQEFHGDMVL  480 (808)
T ss_pred             -Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCe-EEE-EeCCeEEEcCEEE
Confidence             111111110 01 111235678999999999997643   3  9999999999986  333 344 4578899999999


Q ss_pred             EC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       332 ~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      ++ |...+.+..+.+.|+||..+....++..++.+.|.++.++++|
T Consensus       481 vTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~F  526 (808)
T PLN02328        481 CTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNF  526 (808)
T ss_pred             ECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence            75 5555443223467788877666556667889999999998875

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.83  E-value=7e-20  Score=174.89  Aligned_cols=98  Identities=14%  Similarity=0.166  Sum_probs=76.9

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhh
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l  349 (431)
                      .+.+.|||+.|++|+++   ++|..|.++++|.+|.+++ +|  |.|++.+.+++.||.|||. |..++..+  .++|.+
T Consensus       201 ~~~~~GGmd~la~Afa~---ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI--~f~P~l  272 (450)
T COG1231         201 MLQRLGGMDQLAEAFAK---QLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQI--DFAPLL  272 (450)
T ss_pred             hhccCccHHHHHHHHHH---HhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhhc--ccCCCC
Confidence            44666999999999974   6789999999999999872 33  5677666578999999986 54444553  466667


Q ss_pred             hhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          350 QESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      +..+.+..+...++...|..+-+++||
T Consensus       273 ~~~~~~a~~~~~y~~~~K~~v~f~rpF  299 (450)
T COG1231         273 PAEYKQAAKGVPYGSATKIGVAFSRPF  299 (450)
T ss_pred             CHHHHHHhcCcCcchheeeeeecCchh
Confidence            777777766788899999999999987

>PLN03000 amine oxidase

Probab=99.82  E-value=7.1e-18  Score=175.74  Aligned_cols=278  Identities=13%  Similarity=0.098  Sum_probs=158.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      ...||+|||||++||+||..|++.|++|+|+|+++++||++.|.+.++                                
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g--------------------------------  230 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEA--------------------------------  230 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccC--------------------------------
Confidence            457999999999999999999999999999999999999999987542                                


Q ss_pred             ccCCCCceeeecCCCeEEeeCc--hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049          101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                         ....+.+|+ |++++....  .+..++.+.|+.-+ .+..-.+.  +..+|+..  +.+....         ....+
T Consensus       231 ---~~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~l--y~~~Gk~v--~~~~~~~---------ve~~f  292 (881)
T PLN03000        231 ---NRVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCPL--YRVDGKPV--DPDVDLK---------VEVAF  292 (881)
T ss_pred             ---CCCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCeE--EEeCCcCC--chhhhhh---------HHHHH
Confidence               012466888 689886543  45556677887533 22221222  22356543  2111000         00111


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN  252 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  252 (431)
                      .+++..+..+.....         ....+.++.++++.      ....+..+.++.+.+....+....   .+   ..+ 
T Consensus       293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as---~l---s~L-  356 (881)
T PLN03000        293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANAG---LV---SKL-  356 (881)
T ss_pred             HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhccccc---CH---HHH-
Confidence            122222111110000         00112334333321      122232233332221111111000   00   001 


Q ss_pred             HHHHHHhhh-ccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE
Q 014049          253 RLALYNSSI-GRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (431)
Q Consensus       253 ~~~~~~~s~-~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (431)
                      .+..+.... ..++   +......||++.|+++|++.+     .|+++++|++|..+  ++. +.|++ +++++.||+||
T Consensus       357 Sl~~wdqd~~~e~~---G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VI  424 (881)
T PLN03000        357 SLAFWDQDDPYDMG---GDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVL  424 (881)
T ss_pred             HHHHhhhcccccCC---CceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEE
Confidence            111111110 1112   235678899999999998644     39999999999886  333 45654 44689999999


Q ss_pred             EC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       332 ~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      ++ |...+..-.+.++|+||+.+....++..++.+.|.++.++++|
T Consensus       425 vTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~F  470 (881)
T PLN03000        425 CTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVF  470 (881)
T ss_pred             EcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCcc
Confidence            75 6555552223578889987776666778899999999999875

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.78  E-value=5.1e-17  Score=162.59  Aligned_cols=244  Identities=12%  Similarity=0.162  Sum_probs=147.6

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccc
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI   93 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (431)
                      -+.+..+|+|||||++||+||.+|++.    |++|+|||+++++||++.++...                          
T Consensus        18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~--------------------------   71 (576)
T PRK13977         18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNP--------------------------   71 (576)
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccc--------------------------
Confidence            345567999999999999999999996    68999999999999999886432                          


Q ss_pred             cccccccccCCCCceeeecCCCeEEeeCchHHHHHHhc------C---ccccccccccccee---ee-ccCCceeecCCC
Q 014049           94 SNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF---ML-DADAKLCSVPDS  160 (431)
Q Consensus        94 ~~~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~------~---~~~~~~f~~~~~~~---~~-~~~g~~~~~p~~  160 (431)
                                 ..+|.++. ||.....-..+.+++.+.      |   .++|..+.+.++.|   .+ ..+|..+..+  
T Consensus        72 -----------~~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~--  137 (576)
T PRK13977         72 -----------EKGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTD--  137 (576)
T ss_pred             -----------cCCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECc--
Confidence                       12455555 465422223455555433      1   24666676666553   11 1123222211  


Q ss_pred             hhhhhccCCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcch
Q 014049          161 RAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV  240 (431)
Q Consensus       161 ~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~  240 (431)
                         .   -.|+..++..+.+++-   ..             ..+..+.++.||++.......+-.   +...+..+.   
T Consensus       138 ---~---~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t~Fw~---~w~t~FaF~---  189 (576)
T PRK13977        138 ---K---FGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFETNFWY---YWRTMFAFE---  189 (576)
T ss_pred             ---C---CCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchhHHHH---HHHHHHCCc---
Confidence               0   1233333333433221   11             123556889999987444332221   111222222   


Q ss_pred             hhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCC--CcEEEE
Q 014049          241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKGV  317 (431)
Q Consensus       241 ~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~--g~~~gV  317 (431)
                        +..|+.+....+.+|+..+...+.. .++.+.+|- ...|++.|.+.++++|++|+++++|++|..+.++  +++++|
T Consensus       190 --~whSA~E~rry~~rf~~~~~~l~~~-s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI  266 (576)
T PRK13977        190 --KWHSALEMRRYMHRFIHHIGGLPDL-SGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAI  266 (576)
T ss_pred             --hhhHHHHHHHHHHHHHHhhccCCcc-ccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEE
Confidence              2356777666666676655444322 124444554 3689999999999999999999999999884223  678898


Q ss_pred             EeC-CCc--E---EEeCEEEE
Q 014049          318 RLA-SGQ--D---ILSHKLVL  332 (431)
Q Consensus       318 ~~~-~G~--~---i~Ad~VI~  332 (431)
                      ++. +|+  +   ..+|.||+
T Consensus       267 ~~~~~~~~~~I~l~~~DlViv  287 (576)
T PRK13977        267 HLTRNGKEETIDLTEDDLVFV  287 (576)
T ss_pred             EEEeCCceeEEEecCCCEEEE
Confidence            875 332  2   35788884

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=3.8e-17  Score=163.59  Aligned_cols=98  Identities=15%  Similarity=0.060  Sum_probs=73.1

Q ss_pred             EeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCCCCCCCCCCCchhhhh
Q 014049          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQ  350 (431)
Q Consensus       272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~l~~~~~~~l~  350 (431)
                      ....+|+..+..+++.     |..|+++..|.+|.... ++. +.|++.++..+.||+||+ .|-..+..-.+.+.|+||
T Consensus       212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp  284 (501)
T KOG0029|consen  212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP  284 (501)
T ss_pred             hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence            4568899999887754     99999999999999972 443 345556677799999885 454444432246788898


Q ss_pred             hhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          351 ESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      ..+....++--.+.+.|.++.+++.|
T Consensus       285 ~~k~~aI~~lg~g~~~Kv~l~F~~~f  310 (501)
T KOG0029|consen  285 RWKQEAIDRLGFGLVNKVILEFPRVF  310 (501)
T ss_pred             HHHHHHHHhcCCCceeEEEEEecccc
Confidence            88777666656788899999888865

>PLN02976 amine oxidase

Probab=99.74  E-value=1.4e-16  Score=170.65  Aligned_cols=102  Identities=11%  Similarity=0.014  Sum_probs=76.6

Q ss_pred             cEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecC-------CCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCC
Q 014049          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPGS  341 (431)
Q Consensus       270 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~-------~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l  341 (431)
                      ..+.+.||++.|+++|++.+     .|+||++|++|.....       ++.-+.|++.+|+++.||+||++ |...+..-
T Consensus       927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976        927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred             ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence            45678999999999997643     4999999999987310       12225677889999999999975 54444421


Q ss_pred             CCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       342 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      .+.++|+||..+....+...++.+.|.++.++++|
T Consensus      1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpF 1036 (1713)
T PLN02976       1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVF 1036 (1713)
T ss_pred             ccccCCcccHHHHHHHHhhccccceEEEEEeCCcc
Confidence            13578899987766556667899999999999885

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.71  E-value=3.3e-15  Score=140.75  Aligned_cols=246  Identities=19%  Similarity=0.228  Sum_probs=153.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEE--EccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~v--lE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      ..+|+|+|||++||+||++|++.+-+|+|  +|+.+|+||..+|..-+                                
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~--------------------------------   58 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ--------------------------------   58 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence            36899999999999999999999988755  99999999999992211                                


Q ss_pred             cccCCCCceeeecCCCeEEeeCc----hHHHHHHhcCccccccccccc-c----eeeeccCCceeecCCChhhhhccCCC
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLEFKSID-A----TFMLDADAKLCSVPDSRAAIFKDKSL  170 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~----~~~~~l~~~~~~~~~~f~~~~-~----~~~~~~~g~~~~~p~~~~~~~~~~~l  170 (431)
                            ..|-++. ||.-+-..+    ...+++.++|+++-+.-.+.+ +    .|++ ..|++..+|.+....... .+
T Consensus        59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~-~l  129 (491)
T KOG1276|consen   59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF-SL  129 (491)
T ss_pred             ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc-cc
Confidence                  2334445 465543333    377888999997654332222 1    3333 478888888865442111 12


Q ss_pred             ChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcCCCCcchhhhhhchhh
Q 014049          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (431)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~  249 (431)
                      .+.-|..+..|+....+...           ..+-.++++.+|.++ |+  +++.+.+...+.-+.|..|+  +++|.+.
T Consensus       130 ~p~~k~L~~a~l~e~fr~~~-----------~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk~  194 (491)
T KOG1276|consen  130 QPFGKPLLEAFLRELFRKKV-----------SDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMKS  194 (491)
T ss_pred             CcccchhHHHHHhhhccccC-----------CCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHHH
Confidence            23344444444433211110           123457899999985 55  45555554444444566665  5577777


Q ss_pred             HHHHHHHHHhhhcc---------cc--------------C--CCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeE
Q 014049          250 GINRLALYNSSIGR---------FQ--------------N--ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVIS  304 (431)
Q Consensus       250 ~~~~~~~~~~s~~~---------~g--------------~--~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~  304 (431)
                      ++..+.......|.         ++              .  ..-+.+-.+||+..++++|++.+.+.+..|.++-++..
T Consensus       195 ~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~  274 (491)
T KOG1276|consen  195 SFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSG  274 (491)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhccccccc
Confidence            76655543322210         00              0  01113457999999999999999888889999999998


Q ss_pred             EEEecCCCcEEEEEeCCCc
Q 014049          305 LLTDQNSGSYKGVRLASGQ  323 (431)
Q Consensus       305 I~~~~~~g~~~gV~~~~G~  323 (431)
                      +.....++...+.+..+++
T Consensus       275 ~sk~~~~~~~~tl~~~~~~  293 (491)
T KOG1276|consen  275 NSKSRSGNWSLTLVDHSGT  293 (491)
T ss_pred             ccccccCCceeEeEcCCCc
Confidence            8765434444455545554

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.68  E-value=9.7e-17  Score=160.40  Aligned_cols=124  Identities=15%  Similarity=0.064  Sum_probs=77.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhh
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF  356 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~  356 (431)
                      ++.+...+...+...|++|++|++|++|..+  ++++ .|.+.+|+++.||+||++ |...+.++  ...++++......
T Consensus       208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~i--~~~p~l~~~~~~a  282 (450)
T PF01593_consen  208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKNI--LLLPPLPEDKRRA  282 (450)
T ss_dssp             TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHTS--EEESTSHHHHHHH
T ss_pred             ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhhh--hhccccccccccc
Confidence            4444455556667788999999999999998  6664 677899999999999975 44333331  2345566533332


Q ss_pred             cccCCCCeEEEEEEEeCCCCCCCC-CceEEEeCCCCCCCCCCCeEEEEEecCCCcc
Q 014049          357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAV  411 (431)
Q Consensus       357 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~  411 (431)
                      .+...+..+.+.++.+++++.... ....++.++.   .  .+..++...+.....
T Consensus       283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~  333 (450)
T PF01593_consen  283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDG---F--SPIGYVSDPSKFPGR  333 (450)
T ss_dssp             HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESS---T--SSEEEEEEECCTTSC
T ss_pred             ccccccCcceeEEEeeecccccccccccceecccC---c--cccccccccccCccc
Confidence            244445666777777888764332 3445555444   1  446666666654444

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.67  E-value=8.2e-15  Score=134.45  Aligned_cols=257  Identities=15%  Similarity=0.133  Sum_probs=143.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      ..+|.|||+|++||+||..|++. ++|+++|+++++||+++|...+-                                 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~---------------------------------   53 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT---------------------------------   53 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence            35899999999999999999987 89999999999999999975320                                 


Q ss_pred             cCCCCceeeecCCCeEEeeC---chHHHHHHhcCcccccccccccceeeeccCCceeecCC--Chhhhhcc--CCCChHH
Q 014049          102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPD--SRAAIFKD--KSLGLME  174 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~---~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~--~~~~~~~~--~~l~~~~  174 (431)
                        ...++.+|. | .+++..   ..+.+++.+.|++....+....-  .+  |+.-.++..  ....+|..  ..+.+  
T Consensus        54 --d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~--d~gglEy~g~tgl~~L~aqk~n~l~p--  123 (447)
T COG2907          54 --DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SL--DMGGLEYSGLTGLAGLLAQKRNLLRP--  123 (447)
T ss_pred             --cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Ee--cCCceeeccCCCccchhhccccccch--
Confidence              012334454 2 222211   25888899999876544433211  11  222222221  11123321  11112  


Q ss_pred             HHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHH
Q 014049          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRL  254 (431)
Q Consensus       175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  254 (431)
                        ++.++++.+.........   ..+ .....+.++.+||++.+.+...++-+.+.+....++...  .+++..++. .+
T Consensus       124 --Rf~~mlaeiLrf~r~~~~---~~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~--~d~~~~pa~-~~  194 (447)
T COG2907         124 --RFPCMLAEILRFYRSDLA---PSD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPL--ADASRYPAC-NF  194 (447)
T ss_pred             --hHHHHHHHHHHHhhhhcc---chh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcH--hhhhhhhHH-HH
Confidence              222233332222211100   001 123456899999999999987776554322111122111  112222221 22


Q ss_pred             HHHHhhhccccCCCcc-EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-
Q 014049          255 ALYNSSIGRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-  332 (431)
Q Consensus       255 ~~~~~s~~~~g~~~~~-~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-  332 (431)
                      ..+....|..--.+.+ +..+.||+.+-+|.|   ++..+++|.++++|.+|..-. +|.  -|...+|++-+.|.||+ 
T Consensus       195 ~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~l---aa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vViA  268 (447)
T COG2907         195 LVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRL---AADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVVIA  268 (447)
T ss_pred             HHHHhccCceecCCCCceeEcccchHHHHHHH---hccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceeeee
Confidence            2333322221111123 444788999888855   467889999999999998863 663  33345699999999773 


Q ss_pred             -CCCCC
Q 014049          333 -DPSFT  337 (431)
Q Consensus       333 -~p~~~  337 (431)
                       .|++.
T Consensus       269 th~dqA  274 (447)
T COG2907         269 THPDQA  274 (447)
T ss_pred             cChHHH
Confidence             57765

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.57  E-value=1.3e-13  Score=132.24  Aligned_cols=116  Identities=13%  Similarity=0.065  Sum_probs=76.3

Q ss_pred             eecCCcchHHHHHHHHHH----hcC--cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC-CCCCC-CCCC
Q 014049          273 YPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS-FTVPG-SLAS  344 (431)
Q Consensus       273 ~p~gG~~~l~~al~r~~~----~~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~-~~~~~-l~~~  344 (431)
                      ...-|...+.+-|.+.+.    ++|  ++++++++|.+|..+ +.++ +.|++.||+.+.||+||++-+ -.+.+ -..-
T Consensus       217 ~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~-v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~l  294 (498)
T KOG0685|consen  217 WNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGE-VKLRCSDGEVFHADHVIVTVSLGVLKEQHHKL  294 (498)
T ss_pred             echhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCc-EEEEEeCCcEEeccEEEEEeechhhhhhhhhh
Confidence            344566666665554322    234  677777999999886 3455 578999999999999997533 11121 1113


Q ss_pred             chhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC-CCCceEEEeCCC
Q 014049          345 SHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPR  390 (431)
Q Consensus       345 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~  390 (431)
                      +.|+||..+....++...|.+-|.++=+++||-+ +-...+++.-..
T Consensus       295 F~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e  341 (498)
T KOG0685|consen  295 FVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDE  341 (498)
T ss_pred             cCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecC
Confidence            6888998777766666778888988889887533 334455554443

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=1.7e-13  Score=133.85  Aligned_cols=251  Identities=16%  Similarity=0.142  Sum_probs=140.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (431)
                      .|+|+|||++||+||..|+++|++|+|+|+++++||+++++.... ++|.                              
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~~------------------------------   50 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNHV------------------------------   50 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCee------------------------------
Confidence            599999999999999999999999999999999999999987532 0110                              


Q ss_pred             CCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeec--cCCce--eecCCC------hhhhhccCCCCh
Q 014049          104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKL--CSVPDS------RAAIFKDKSLGL  172 (431)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~--~~g~~--~~~p~~------~~~~~~~~~l~~  172 (431)
                             +. |=++++.. -.++.+|.+.+.+..+.++.....|+-.  ..|..  +..|..      ..+.++.+.+..
T Consensus        51 -------E~-glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~  122 (485)
T COG3349          51 -------EH-GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR  122 (485)
T ss_pred             -------ee-eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence                   11 23333322 2577888888887666666544433211  12221  111111      112222333333


Q ss_pred             HHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHH-HHHHH-HHhcCCCCcchhhhhhchhhH
Q 014049          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVLY-AIAMADYDQEVSEYVLKTRDG  250 (431)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~~~~-~~~~~~~~~~~~~~~~s~~~~  250 (431)
                      .+|..+   +-.+.....      .......+..+.++.+||++.+..+... +.+.- ...+. |. ++  +..|.+..
T Consensus       123 ~~~~~~---~~~l~~~~~------g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~-f~-~~--e~~sa~~~  189 (485)
T COG3349         123 REKIRF---VLRLGDAPI------GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALT-FI-DP--EGCSARFF  189 (485)
T ss_pred             HHHhHH---hhccccccc------hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhc-cc-Cc--ccCcchhH
Confidence            333331   111100000      0012245677899999999977765433 22221 11111 11 11  22344433


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcc-hHHHHHHHHHHhcCcEEEeCcceeEEEEec--CCCcEEEEEeCCCcEEEe
Q 014049          251 INRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDILS  327 (431)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~-~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~--~~g~~~gV~~~~G~~i~A  327 (431)
                      +..+..++.  ...+.  +-....+|+.. -+.+.+.+.+.+.|.+++++.+|+.|..+.  .+.+++|+.+. +....+
T Consensus       190 lt~~~~~~~--~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~  264 (485)
T COG3349         190 LTILNLFLI--VTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQ  264 (485)
T ss_pred             HHHHHHHHH--hccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEe
Confidence            333322221  12121  11335677755 455777788888999999999999998862  23457788765 655555


Q ss_pred             CEEE
Q 014049          328 HKLV  331 (431)
Q Consensus       328 d~VI  331 (431)
                      ..++
T Consensus       265 ~~~~  268 (485)
T COG3349         265 QAAL  268 (485)
T ss_pred             eehh
Confidence            5544

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.42  E-value=3.9e-13  Score=97.54  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=38.1

Q ss_pred             EECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChh
Q 014049           27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (431)
Q Consensus        27 IIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~   67 (431)
                      |||||++||+||.+|+++|++|+|+|+++++||+++++..+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~   41 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP   41 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence            89999999999999999999999999999999999998653

...

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.40  E-value=4.3e-12  Score=123.18  Aligned_cols=43  Identities=26%  Similarity=0.426  Sum_probs=40.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      +||+|||||++||++|..|++.|.+|+|+|+++++||.+.+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~   44 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV   44 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec
Confidence            7999999999999999999999999999999999999887753

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.38  E-value=1.3e-11  Score=116.65  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             EEeec-CCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      -++|. .....|.++|.+.+++.|++|+++++|.+|..+  + ....|.+++|++++||.+|+
T Consensus       102 r~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081         102 RMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             eecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence            35787 779999999999999999999999999999876  3 34678888998999999884

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.36  E-value=1.7e-11  Score=119.38  Aligned_cols=60  Identities=30%  Similarity=0.409  Sum_probs=52.9

Q ss_pred             EEeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++++.+|   ...+.++|.+.+++.|++|+.+++|++|..+  ++++.+|++.+|+ ++||+||..
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a  198 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA  198 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence            6678888   7899999999999999999999999999998  7888889998887 999999954

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.27  E-value=2.1e-11  Score=119.96  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             EEeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..||.-. ...+.++|.+.++++|++|+++++|+.|..+  ++.+..|++++++++.||+||+
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL  160 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL  160 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence            4688764 7899999999999999999999999999987  6777889987888999999995

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.22  E-value=3.6e-10  Score=110.34  Aligned_cols=61  Identities=21%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             EEeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcE-EEeCEEEEC
Q 014049          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~Ad~VI~~  333 (431)
                      .+.|.+|   .+++..+|++.+..+|++++||++|+.|..+  ++.++.+.+.+|++ ++|+.||..
T Consensus       142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~--~dg~~~~~~~~g~~~~~ak~Vin~  206 (429)
T COG0579         142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQ--SDGVFVLNTSNGEETLEAKFVINA  206 (429)
T ss_pred             EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEe--CCceEEEEecCCcEEEEeeEEEEC
Confidence            5566676   4688999999999999999999999999987  33356677788887 999999953

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.16  E-value=2.1e-10  Score=104.99  Aligned_cols=99  Identities=20%  Similarity=0.384  Sum_probs=69.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      ++|.+|||||++|++.|..|++.|++|+|+||++++||+|-+...+.                                 
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~---------------------------------   47 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ---------------------------------   47 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC---------------------------------
Confidence            38999999999999999999999999999999999999999865431                                 


Q ss_pred             cCCCCceeeecCCCeEEeeCch-HHHHHHhcCcccccccccccceeeeccCCceeecCCChh
Q 014049          102 SQHPRNFNLDVSGPRVLFCADH-AVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRA  162 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~~-~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~  162 (431)
                          .+-.+.--||+++.+.+. ..+.+     .++.+|......-.-..+|..+.+|.+..
T Consensus        48 ----tGIlvHkYGpHIFHT~~~~Vwdyv-----~~F~e~~~Y~hrVla~~ng~~~~lP~nl~  100 (374)
T COG0562          48 ----TGILVHKYGPHIFHTDNKRVWDYV-----NQFTEFNPYQHRVLALVNGQLYPLPFNLN  100 (374)
T ss_pred             ----CCeEEeeccCceeecCchHHHHHH-----hhhhhhhhhccceeEEECCeeeeccccHH
Confidence                011112228999877663 33333     23445544333222123788999998753

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.16  E-value=7.9e-10  Score=109.57  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=47.3

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.|.+|.   ..+.++|.+.++..|++++++++|.+|..+  ++. +.|++.+| +++||.||..
T Consensus       138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A  199 (393)
T PRK11728        138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC  199 (393)
T ss_pred             EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence            55666663   688999999999999999999999999765  444 46777666 7999999853

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.15  E-value=2.6e-09  Score=108.02  Aligned_cols=57  Identities=25%  Similarity=0.301  Sum_probs=45.2

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ++.+.+|.   ..++++|.+.++..|++|+.+++|.+|..   ++. +.|++.+| +++||+||+
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t~~g-~v~A~~VV~  231 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQP-AVVRTPDG-QVTADKVVL  231 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCc-eEEEeCCc-EEECCEEEE
Confidence            55677773   57889999999999999999999999963   232 56777666 699999885

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.07  E-value=2e-09  Score=106.15  Aligned_cols=58  Identities=21%  Similarity=0.179  Sum_probs=44.8

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ++.+.+|.   ..+.++|.+.++..|++++.+++|.+|..+  ++. +.|++++| ++.||+||+
T Consensus       134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~  194 (380)
T TIGR01377       134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV  194 (380)
T ss_pred             EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence            44566663   478888988888999999999999999875  454 45776555 799998774

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.06  E-value=3.5e-09  Score=107.35  Aligned_cols=59  Identities=29%  Similarity=0.385  Sum_probs=47.7

Q ss_pred             eecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CC--cEEEeCEEEEC
Q 014049          273 YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVLD  333 (431)
Q Consensus       273 ~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G--~~i~Ad~VI~~  333 (431)
                      ++.+|...+.+.|.+.+++.|++|+++++|++|..+  ++++++|++.  +|  ..++|+.||+.
T Consensus       125 ~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIlA  187 (466)
T PRK08274        125 FFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVLA  187 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEEC
Confidence            345666788999999999999999999999999886  7888888763  33  35799999853

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.05  E-value=9.9e-09  Score=105.75  Aligned_cols=48  Identities=29%  Similarity=0.477  Sum_probs=42.3

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        15 ~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..+..+.++||||||+| +|++||+..+++|.+|+||||.+.+||.+..
T Consensus         9 ~~~~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~~   56 (564)
T PRK12845          9 GTPVRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTAR   56 (564)
T ss_pred             CCCCCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcccC
Confidence            33445568999999999 9999999999999999999999999997763

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.00  E-value=7.7e-09  Score=101.88  Aligned_cols=58  Identities=28%  Similarity=0.268  Sum_probs=44.7

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      .+.|.+|.   ..+.+++.+.+...|++++++++|++|..+  ++. +.|++++| +++||+||.
T Consensus       138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (376)
T PRK11259        138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVV  198 (376)
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEE
Confidence            44566663   467777878888899999999999999876  444 46877666 799999884

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.99  E-value=1.1e-08  Score=103.31  Aligned_cols=60  Identities=20%  Similarity=0.262  Sum_probs=47.3

Q ss_pred             EEeecCC-c---chHHHHHHHHHHh----cC--cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG-~---~~l~~al~r~~~~----~G--g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+.|..| .   +.++++|.+.++.    .|  ++|+++++|+.|..+  ++..+.|++.+| +++||.||+.
T Consensus       199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva  268 (497)
T PTZ00383        199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS  268 (497)
T ss_pred             EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence            5567543 2   6899999999988    78  678999999999875  566678887766 6999998854

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.98  E-value=1.1e-08  Score=105.50  Aligned_cols=61  Identities=26%  Similarity=0.281  Sum_probs=47.6

Q ss_pred             cEEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CC--cEEEeCEEEEC
Q 014049          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVLD  333 (431)
Q Consensus       270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G--~~i~Ad~VI~~  333 (431)
                      ++++|. |.   ..+..++++.+..+|++++.+++|+.|..+  ++++++|++.   +|  .+|+||+||..
T Consensus       138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVnA  206 (546)
T PRK11101        138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVNA  206 (546)
T ss_pred             EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEEC
Confidence            366674 42   477888888889999999999999999876  7788888763   23  36899999843

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.95  E-value=5.4e-08  Score=99.48  Aligned_cols=42  Identities=19%  Similarity=0.388  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .++||||||+|.+||+||+.++++|.+|+||||.+..||...
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~  101 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM  101 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            478999999999999999999999999999999999999643

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.94  E-value=4.4e-08  Score=97.68  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=36.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      +||||||||+.|+++|..|+++|++|+||||++.+|+-++
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~as   41 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMETS   41 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCcc
Confidence            6999999999999999999999999999999998765443

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.94  E-value=2.1e-08  Score=92.58  Aligned_cols=58  Identities=14%  Similarity=0.151  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFT  337 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~  337 (431)
                      .-..+|...++.+|+.++-+..|..+....+.+..++|++++|..+.|+++|.+ ..++
T Consensus       154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence            344677888899999999999999998655577778999999999999998853 4443

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.92  E-value=4e-08  Score=98.22  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=46.9

Q ss_pred             CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (431)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (431)
                      +...+.+.|.+.++++|++|+++++|+++.++  +++++||+..   +|+  +++|+.||+
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl  197 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL  197 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence            45688999999999999999999999999998  8899999876   455  478999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.92  E-value=8.4e-10  Score=96.48  Aligned_cols=43  Identities=14%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .++||+|||||.+||+||++|+++|+||+|+|++..+||..+.
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~   58 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG   58 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            3689999999999999999999999999999999999987664

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.91  E-value=5.2e-08  Score=97.36  Aligned_cols=60  Identities=25%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             cEEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ++++|..|.   ..+.++|.+.++..|++|+.+++|++|..+  ++++++|++. +.+++||+||.
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~  251 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV  251 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence            355676653   477899999999999999999999999876  6666678765 45799999885

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.90  E-value=4.3e-08  Score=103.61  Aligned_cols=58  Identities=22%  Similarity=0.241  Sum_probs=47.3

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      +++|.+|.   ..+.++|.+.+.. |++++.+++|++|..+  ++.+ .|++.+|+.+.||+||.
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~  457 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVL  457 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEE
Confidence            66787774   5888999988888 9999999999999876  5554 48877787788999884

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.88  E-value=1e-07  Score=94.96  Aligned_cols=61  Identities=20%  Similarity=0.265  Sum_probs=46.3

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+.+|.   ..++.+|++.+...|++++.+++|++|..+ +++++++|++.+| ++.|++||++
T Consensus       172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVva  235 (407)
T TIGR01373       172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGVA  235 (407)
T ss_pred             EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEEC
Confidence            44455553   367788888889999999999999999754 2566778887777 6999987753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.88  E-value=1.4e-09  Score=94.51  Aligned_cols=42  Identities=17%  Similarity=0.258  Sum_probs=39.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +-||||||||.+||+||++||++|.||+|+|++..+||-.+-
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~   71 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWG   71 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccc
Confidence            569999999999999999999999999999999999986653

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.85  E-value=5.5e-09  Score=93.58  Aligned_cols=45  Identities=13%  Similarity=0.315  Sum_probs=42.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhh
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD   68 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~   68 (431)
                      +++|||+||+||+||..|+.+|++|+|+||..-+|||..|-++++
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~   47 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG   47 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence            699999999999999999999999999999999999999987654

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.79  E-value=7.6e-08  Score=96.16  Aligned_cols=49  Identities=24%  Similarity=0.356  Sum_probs=43.4

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      .+.+.++||+|||||++|+-+|+.++.+|++|+++|++|.-.|..+..+
T Consensus         7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrst   55 (532)
T COG0578           7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRST   55 (532)
T ss_pred             cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccc
Confidence            3445789999999999999999999999999999999999988766543

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.78  E-value=6.4e-09  Score=103.08  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=40.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||||||||++|++||++|+++|++|+|||+++.+|.+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            4699999999999999999999999999999999999997776

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.74  E-value=7.6e-07  Score=87.45  Aligned_cols=43  Identities=12%  Similarity=0.223  Sum_probs=38.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCcccccC
Q 014049           23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      .++-|||+|+++|+||++|-|.    |.++++||+.+.+||.+....
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g   49 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG   49 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence            5788999999999999999876    569999999999999987653

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.70  E-value=1.6e-08  Score=93.47  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||+|||||.+||+||++|+++|++|+|+||+..+||.+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            36899999999999999999999999999999999999864

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.69  E-value=1.9e-08  Score=93.26  Aligned_cols=41  Identities=15%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||+|||||++||+||+.|+++|++|+|+|++..+||..
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            36899999999999999999999999999999999999864

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.68  E-value=2.1e-08  Score=100.43  Aligned_cols=41  Identities=29%  Similarity=0.469  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ++|||||||||++|++||+.|+++|++|+|+||++.+|.+.
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~   44 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN   44 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc
Confidence            46999999999999999999999999999999999988753

>TIGR00275 flavoprotein, HI0933 family

Probab=98.64  E-value=4.3e-07  Score=90.09  Aligned_cols=65  Identities=20%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             EeecC-CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCCCCCCC
Q 014049          272 IYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (431)
Q Consensus       272 ~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~  340 (431)
                      .||.. ....+.++|.+.+++.|++++++++|++|..+  ++ .+.|++ +++++.||.||+ .....++.
T Consensus        97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIlAtG~~s~p~  163 (400)
T TIGR00275        97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVILATGGLSYPQ  163 (400)
T ss_pred             eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence            46544 36789999999999999999999999999764  44 356776 577899999985 34433343

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK10015 oxidoreductase; Provisional

Probab=98.63  E-value=3.2e-08  Score=98.97  Aligned_cols=40  Identities=30%  Similarity=0.488  Sum_probs=37.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ++|||||||||++|++||+.|+++|++|+|+||++.+|-+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k   43 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK   43 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence            4699999999999999999999999999999999987654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.62  E-value=3.4e-08  Score=100.09  Aligned_cols=46  Identities=24%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      .+.+|||+|||||.+|+.||..|++.|++|+++|+++.+||.|...
T Consensus         2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~   47 (461)
T PRK05249          2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHT   47 (461)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccccc
Confidence            4567999999999999999999999999999999999999987543

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.62  E-value=4.1e-08  Score=98.05  Aligned_cols=46  Identities=22%  Similarity=0.467  Sum_probs=41.1

Q ss_pred             CCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           12 VPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        12 ~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      +|..|.-+...+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         8 ~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364          8 SPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             CCCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            4566666667899999999999999999999999999999999865

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.58  E-value=4.5e-08  Score=99.14  Aligned_cols=43  Identities=19%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||+|||+|.+|++||.++++.|++|+++|+++.+||.|..
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~   44 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN   44 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence            4699999999999999999999999999999998899998754

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.58  E-value=7.3e-07  Score=89.55  Aligned_cols=61  Identities=20%  Similarity=0.180  Sum_probs=49.1

Q ss_pred             EeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-CcEEEeCEEEE
Q 014049          272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL  332 (431)
Q Consensus       272 ~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~~i~Ad~VI~  332 (431)
                      .++.++...+.++|.+.++++|++|+++++|++|..+++++++++|...+ +.+++|+.||+
T Consensus       116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl  177 (432)
T TIGR02485       116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL  177 (432)
T ss_pred             eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence            35666777899999999999999999999999998752247788887543 35799999885

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK07121 hypothetical protein; Validated

Probab=98.58  E-value=7.2e-08  Score=98.42  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .++||||||+|.+||+||+.++++|.+|+||||+...||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            468999999999999999999999999999999999999654

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.57  E-value=6.5e-08  Score=97.25  Aligned_cols=44  Identities=18%  Similarity=0.264  Sum_probs=40.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ....+|+|||||.+||+||..|+++|++|+|+|+++.+||.|..
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            34579999999999999999999999999999999999999864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.54  E-value=7.2e-08  Score=97.09  Aligned_cols=43  Identities=16%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG~~~t   63 (431)
                      ++|||||||||.+|++||.+|+++|++|+|+|+.+ .+||.|..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            56999999999999999999999999999999987 48998754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.53  E-value=7.4e-08  Score=93.64  Aligned_cols=36  Identities=19%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            489999999999999999999999999999998764

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.52  E-value=8.5e-08  Score=96.46  Aligned_cols=42  Identities=31%  Similarity=0.517  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC-CCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~-~GG~~~   62 (431)
                      .+|||||||||.+|++||..|++.|++|+++|+++. +||.|.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            469999999999999999999999999999999875 799764

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.51  E-value=1.2e-07  Score=95.29  Aligned_cols=41  Identities=12%  Similarity=0.199  Sum_probs=36.5

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        16 ~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +++...+|||+|||||++|++||..|+++|++|+|+|++..
T Consensus        33 ~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         33 KKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            44555679999999999999999999999999999999853

>PRK06370 mercuric reductase; Validated

Probab=98.51  E-value=1.1e-07  Score=96.32  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++.+|||||||+|.+|++||.+|++.|++|+++|+. .+||.|..
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   45 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN   45 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence            567899999999999999999999999999999996 67776654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.50  E-value=1.2e-07  Score=95.04  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=44.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCcccccChhh
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD   68 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~t~~~~~   68 (431)
                      .++.+||+|||||++||++|++|.++|.. ++||||++.+||.++....++
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            45679999999999999999999999999 999999999999988755443

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.50  E-value=1.3e-07  Score=96.77  Aligned_cols=44  Identities=30%  Similarity=0.412  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      |++.|||||||||+.|+++|..|+++|++|+|+||++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~   46 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS   46 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            34569999999999999999999999999999999988777553

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.50  E-value=1.2e-07  Score=96.07  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.+|||||||||.+|+.||.+|++.|++|+++|+++.+||.|..
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n   45 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLN   45 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccC
Confidence            44699999999999999999999999999999999999997643

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.49  E-value=1.3e-07  Score=93.67  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=36.7

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      +++..+||||||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            4566799999999999999999999999999999999865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.49  E-value=1.2e-07  Score=94.95  Aligned_cols=40  Identities=30%  Similarity=0.501  Sum_probs=34.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ||||||||++|++||+.+|++|.+|+++|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999998764

>PRK06116 glutathione reductase; Validated

Probab=98.48  E-value=1.1e-07  Score=95.93  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||+|||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n   44 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN   44 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence            4699999999999999999999999999999996 89997754

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.48  E-value=1.4e-07  Score=89.40  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      |||+|||||++||++|+.|++.|.+|+|+|++..++.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            7999999999999999999999999999999998875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.48  E-value=1.4e-07  Score=95.66  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      |.+|||||||||.+|++||.+|++.|++|+|+|+ +.+||.|..
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~   43 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN   43 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence            3569999999999999999999999999999999 789998754

>PTZ00058 glutathione reductase; Provisional

Probab=98.46  E-value=2e-07  Score=95.83  Aligned_cols=52  Identities=21%  Similarity=0.343  Sum_probs=43.4

Q ss_pred             CCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           11 PVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        11 ~~~~-~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      |+|. ++.....+|||||||+|.+|++||..+++.|++|+++|++ .+||.|-.
T Consensus        36 ~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         36 SAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             CcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            4444 4443445799999999999999999999999999999996 79998765

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.45  E-value=1.7e-07  Score=94.99  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=38.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||||||||++|+.||..|++.|++|+|+|+ +.+||.|..
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~   41 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN   41 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence            38999999999999999999999999999999 899998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK08013 oxidoreductase; Provisional

Probab=98.45  E-value=1.8e-07  Score=93.05  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      |+++||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~   38 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE   38 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence            34689999999999999999999999999999999864

>PRK09126 hypothetical protein; Provisional

Probab=98.45  E-value=1.8e-07  Score=92.72  Aligned_cols=37  Identities=22%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ++||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   39 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAA   39 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCccc
Confidence            6999999999999999999999999999999998753

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.44  E-value=1.7e-07  Score=94.46  Aligned_cols=41  Identities=27%  Similarity=0.354  Sum_probs=38.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||+|||+|.+|++||.++++.|++|+++|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            59999999999999999999999999999999 589998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.44  E-value=2e-07  Score=94.51  Aligned_cols=44  Identities=20%  Similarity=0.388  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +.+|||||||+|.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus         2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~   45 (466)
T PRK07818          2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNV   45 (466)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecC
Confidence            34699999999999999999999999999999985 788877653

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.44  E-value=2.2e-07  Score=94.95  Aligned_cols=44  Identities=32%  Similarity=0.481  Sum_probs=38.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ++.+|||+|||||+.|+++|+.|+++|.+|+||||++..+|...
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~   46 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS   46 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence            35569999999999999999999999999999999987665544

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.42  E-value=2.2e-07  Score=91.85  Aligned_cols=35  Identities=20%  Similarity=0.437  Sum_probs=33.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +++||+|||||++||++|+.|+++|++|+|+|+++
T Consensus         2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            45899999999999999999999999999999875

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.42  E-value=2.3e-07  Score=94.02  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||||||||.+|++||..|++.|++|+++|++. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            46999999999999999999999999999999987 9997754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.42  E-value=2.5e-07  Score=94.02  Aligned_cols=43  Identities=21%  Similarity=0.284  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      ..|||||||||.+|++||.+|++.|++|+++|++ .+||.|...
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~   45 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK   45 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence            4799999999999999999999999999999996 889988653

>PRK07045 putative monooxygenase; Reviewed

Probab=98.42  E-value=2.5e-07  Score=91.62  Aligned_cols=38  Identities=18%  Similarity=0.330  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            45789999999999999999999999999999999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.41  E-value=2.3e-07  Score=93.51  Aligned_cols=41  Identities=22%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||+|||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~~   42 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCVN   42 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-ccccceec
Confidence            599999999999999999999999999999995 68997753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.41  E-value=2.6e-07  Score=91.58  Aligned_cols=54  Identities=17%  Similarity=0.185  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      ..+.+.|.+.++..|++++.+++|++|..+  ++. +.|++++|++++||.|| ++..
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG~  167 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAADGA  167 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEecCC
Confidence            466777778888889999999999999875  444 45777889999999988 4543

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.41  E-value=9.7e-06  Score=79.55  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=47.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC--cEEEeCEEEE-CCCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF  336 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~-~p~~  336 (431)
                      ..+.++|.+.++.+|++++.+++|.++..+  ++++++|.+.++  .+++||+||+ +..+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw  321 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF  321 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence            478899999999999999999999999887  778888887776  4799999885 4444

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.39  E-value=2.2e-07  Score=83.10  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             EEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCccccc
Q 014049           26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        26 iIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~t~   64 (431)
                      +|||||++||++|+.|.++|.+ |+|||+++.+||.+...
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~   40 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY   40 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence            7999999999999999999999 99999999999998853

...

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.39  E-value=3.8e-07  Score=98.35  Aligned_cols=43  Identities=19%  Similarity=0.218  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.+||+|||||.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            4589999999999999999999999999999999999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.38  E-value=2.9e-07  Score=91.69  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      |..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus         2 m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          2 MQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            45689999999999999999999999999999997

>PLN02463 lycopene beta cyclase

Probab=98.38  E-value=4.7e-07  Score=90.62  Aligned_cols=48  Identities=29%  Similarity=0.627  Sum_probs=41.4

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus         9 ~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +..-|.+.+-....|||+|||||++||++|..|+++|++|+|+|+++.
T Consensus        15 ~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463         15 DFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             cccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            445556666666789999999999999999999999999999999764

>PRK14694 putative mercuric reductase; Provisional

Probab=98.37  E-value=3.7e-07  Score=92.64  Aligned_cols=44  Identities=18%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ...+|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus         3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          3 SDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            345799999999999999999999999999999996 79998764

>PRK06184 hypothetical protein; Provisional

Probab=98.37  E-value=3.8e-07  Score=93.43  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~   65 (431)
                      |+++||+|||||++||++|+.|++.|.+|+|+||++.+  .++...+.
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~   48 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQ   48 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeec
Confidence            45689999999999999999999999999999999876  45555444

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.37  E-value=4.5e-07  Score=89.77  Aligned_cols=32  Identities=22%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      |||||||||++|++||..|+++|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999998

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.37  E-value=8.8e-06  Score=81.71  Aligned_cols=58  Identities=31%  Similarity=0.421  Sum_probs=49.6

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV  331 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI  331 (431)
                      .+.|.-|.   ..+.++|++.+..+|+.|.-+++|++|.+.  +++..+|++.-|. |+|.+||
T Consensus       176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G~-iet~~~V  236 (856)
T KOG2844|consen  176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHGS-IETECVV  236 (856)
T ss_pred             eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCcc-eecceEE
Confidence            45576673   689999999999999999999999999997  6666799987775 9999988

>PLN02661 Putative thiazole synthesis

Probab=98.37  E-value=3.5e-07  Score=87.22  Aligned_cols=40  Identities=15%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCcc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~   61 (431)
                      ++||+|||+|++||+||+.|+++ |++|+|+||+..+||..
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~  132 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA  132 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence            58999999999999999999986 99999999999998843

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.37  E-value=3.7e-07  Score=86.79  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=36.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      |||+|||||++||+||..|++.|++|+|+|+++ +||.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~   40 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT   40 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence            699999999999999999999999999999987 7886654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.37  E-value=3.7e-07  Score=93.17  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=37.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~   60 (431)
                      +.+|||||||||++|+.||..+|+.|.+|+++|++ +.+|+.
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            45699999999999999999999999999999999 577764

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.36  E-value=3.8e-07  Score=94.26  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..|||+|||||.+||+||.+|+++|++|+|+|++ .+||.+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence            4599999999999999999999999999999995 78997653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07236 hypothetical protein; Provisional

Probab=98.36  E-value=4.2e-07  Score=89.90  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      |...||+|||||++||++|..|+++|++|+|+||++.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5568999999999999999999999999999999874

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.36  E-value=4.2e-07  Score=93.96  Aligned_cols=42  Identities=36%  Similarity=0.472  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--CCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~--~~GG~~~   62 (431)
                      .++||||||+|.+||+||+.++++|.+|+||||.+  .+||++.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999999999999999  8899664

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.36  E-value=4.1e-07  Score=90.27  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=34.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ...||+|||||++||++|..|+++|++|+|+||++.++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            35799999999999999999999999999999998654

>PRK12831 putative oxidoreductase; Provisional

Probab=98.35  E-value=5.4e-07  Score=91.06  Aligned_cols=44  Identities=18%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+..||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            44568999999999999999999999999999999999999875

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.35  E-value=4.5e-07  Score=92.10  Aligned_cols=44  Identities=27%  Similarity=0.444  Sum_probs=39.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc------CCCCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~------~~~~GG~~~t~   64 (431)
                      .+||+||||+|.+|++||.+|++.|++|+|+|+      +..+||.|...
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~   52 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV   52 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence            469999999999999999999999999999998      47889988653

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.35  E-value=4.6e-07  Score=89.89  Aligned_cols=39  Identities=15%  Similarity=0.287  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +||||||||++|++||..|+++|++|+|+|++...+..|
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~c   39 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPC   39 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCc
Confidence            599999999999999999999999999999987655433

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.35  E-value=4e-07  Score=90.19  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+.|||+|||||++||++|+.|+++|++|+|+|++..
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            4569999999999999999999999999999999863

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.35  E-value=4.4e-07  Score=92.93  Aligned_cols=41  Identities=22%  Similarity=0.330  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .++||||||+| +||+||+.++++|.+|+||||.+..||.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            46899999999 999999999999999999999999998653

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.34  E-value=5.2e-07  Score=83.28  Aligned_cols=43  Identities=35%  Similarity=0.437  Sum_probs=38.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC--CCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~--~GG~~~   62 (431)
                      +.++||||||||++||.||+.||.+|++|+++|+...  +||.+.
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence            4579999999999999999999999999999998765  677653

>PRK13748 putative mercuric reductase; Provisional

Probab=98.34  E-value=4.3e-07  Score=94.37  Aligned_cols=42  Identities=19%  Similarity=0.276  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||||||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence            5699999999999999999999999999999997 89998764

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.33  E-value=5.1e-07  Score=90.90  Aligned_cols=53  Identities=25%  Similarity=0.298  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++++|++.  +|+  .+.||.||+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~~~a~~VVl  186 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQD-DQGTVVGVVVKGKGKGIYIKAAKAVVL  186 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEEC-CCCcEEEEEEEeCCCeEEEEecceEEE
Confidence            468899999999999999999999999986 26788887664  343  368899884

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.33  E-value=5.5e-07  Score=89.01  Aligned_cols=59  Identities=32%  Similarity=0.363  Sum_probs=46.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+..|.   ..+.++|++.++++| ..+..+++|..+..+  . +.++|++.+|+ ++||+||+.
T Consensus       145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a  207 (387)
T COG0665         145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA  207 (387)
T ss_pred             EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence            55666664   578899999999999 566669999999764  3 67889887777 999999953

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.33  E-value=4.4e-07  Score=87.67  Aligned_cols=44  Identities=20%  Similarity=0.367  Sum_probs=41.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      ..+++|||||++|++||..|++.|++|.++||++.+||+...+.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            35899999999999999999999999999999999999988765

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.33  E-value=4.6e-07  Score=89.47  Aligned_cols=54  Identities=24%  Similarity=0.226  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      ..+.+.|.+.+.+.| ++|+.+++|++|..+  ++. +.|++++|++++||.|| ++..
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~~~~vi~adG~  161 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDH-VELTLDDGQQLRARLLVGADGA  161 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCe-eEEEECCCCEEEeeEEEEeCCC
Confidence            357777877777777 999999999999875  444 46778899999999988 4543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=98.33  E-value=4.2e-07  Score=86.47  Aligned_cols=39  Identities=36%  Similarity=0.625  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~   61 (431)
                      ||+||||+|.+|+++|.+|+++| ++|+|||+..+.....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            89999999999999999999998 6999999998876655

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.32  E-value=5.3e-07  Score=89.20  Aligned_cols=37  Identities=32%  Similarity=0.469  Sum_probs=34.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~   41 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR   41 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence            5899999999999999999999999999999998854

>PLN02985 squalene monooxygenase

Probab=98.31  E-value=7.6e-07  Score=90.93  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=37.4

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        15 ~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+......+||||||||++||++|..|+++|++|+|+||...
T Consensus        36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            445566679999999999999999999999999999999864

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=6.1e-07  Score=84.94  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=38.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      ++.|||||||||++||+||.+++|+|.++.+++....+||......
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~   46 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT   46 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence            3579999999999999999999999999666666678887766544

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.31  E-value=7.6e-07  Score=92.50  Aligned_cols=45  Identities=24%  Similarity=0.403  Sum_probs=41.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ...++||||||+|.+||+||+.++++|.+|+||||.+..||....
T Consensus         6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~   50 (574)
T PRK12842          6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF   50 (574)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence            445799999999999999999999999999999999999998653

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.31  E-value=6e-07  Score=89.02  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=41.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +...+|+|||||.+||++|+.|.+.|++|+|+||.+.+||.|..-
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            345799999999999999999999999999999999999998865

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.30  E-value=6.7e-07  Score=88.51  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ||||||||++||++|+.|+++|++|+|+|+++..||.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999999888764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02053 MerA mercuric reductase

Probab=98.30  E-value=6.2e-07  Score=90.89  Aligned_cols=40  Identities=28%  Similarity=0.520  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      |||||||||.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n   40 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVN   40 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeee
Confidence            799999999999999999999999999999976 7887653

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.30  E-value=5.5e-07  Score=89.68  Aligned_cols=53  Identities=13%  Similarity=0.098  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      .+-++|.+.++..|.+++.+++|.+|..+  ++. +.|++++|++++||.|| ++..
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG~  166 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADGA  166 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecCC
Confidence            56667777777789999999999999875  343 46778899999999998 5543

>PRK06185 hypothetical protein; Provisional

Probab=98.30  E-value=6.7e-07  Score=89.11  Aligned_cols=37  Identities=16%  Similarity=0.219  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3569999999999999999999999999999999864

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.30  E-value=7.4e-07  Score=87.42  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      +||+|||||+.|+++|+.|+++|++|+|||++...
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~   35 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA   35 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            69999999999999999999999999999998753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.29  E-value=6.7e-07  Score=88.54  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            37999999999999999999999999999999984

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.28  E-value=8.7e-07  Score=92.17  Aligned_cols=47  Identities=23%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        15 ~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +.+|...++||||||+|.+||+||+.++++|.+|+||||+...||.+
T Consensus         5 ~~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057          5 KTSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             ccCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            45666678999999999999999999999999999999998777643

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.28  E-value=1e-06  Score=94.83  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+..+|+|||||.+||+||..|+++|++|+|+|+++.+||.++.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            35579999999999999999999999999999999999998764

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.28  E-value=1.1e-06  Score=91.06  Aligned_cols=56  Identities=20%  Similarity=0.348  Sum_probs=43.8

Q ss_pred             CCCCCCCCCCC---CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049           10 LPVPPYPPIEP---TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (431)
Q Consensus        10 ~~~~~~~~~~~---~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~   65 (431)
                      .|.-+..++++   .++||+|||||++||++|+.|++.|++|+|+||++.+  +++...+.
T Consensus         8 ~~~~~~~~~~~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~   68 (547)
T PRK08132          8 FPYRPHADQDADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA   68 (547)
T ss_pred             ccCCCCccccCCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence            34444555543   3589999999999999999999999999999999866  55554443

>PRK06834 hypothetical protein; Provisional

Probab=98.28  E-value=8.5e-07  Score=90.21  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=38.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC---CCCcccccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF---YGSHFSSLS   65 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~---~GG~~~t~~   65 (431)
                      |+.+||+|||||++||++|+.|+++|.+|+|+|+++.   .|.+...+.
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~   49 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLH   49 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeEC
Confidence            4569999999999999999999999999999999875   344554443

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.28  E-value=8.1e-07  Score=91.80  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .++||||||+|.+||+||..|+++|.+|+||||++..||.+.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~   46 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA   46 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence            468999999999999999999999999999999999999753

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.27  E-value=7e-07  Score=88.55  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC---CCcEEEEccCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~---G~~V~vlE~~~   55 (431)
                      |..+||+|||||++||++|+.|+++   |++|+|+|++.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~   39 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA   39 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence            4568999999999999999999998   99999999973

>PRK06847 hypothetical protein; Provisional

Probab=98.27  E-value=8.8e-07  Score=87.21  Aligned_cols=51  Identities=18%  Similarity=0.131  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+...|++|+++++|++|..+  ++. +.|++.+|+++.||.||.
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~  157 (375)
T PRK06847        107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG  157 (375)
T ss_pred             HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence            356777777777889999999999999865  444 567778999999999884

>PLN02697 lycopene epsilon cyclase

Probab=98.27  E-value=1.1e-06  Score=89.37  Aligned_cols=42  Identities=24%  Similarity=0.385  Sum_probs=36.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ....|||||||||++||++|..|+++|++|+++|+....+..
T Consensus       105 ~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n  146 (529)
T PLN02697        105 GDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN  146 (529)
T ss_pred             ccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc
Confidence            445699999999999999999999999999999997555444

>PRK14727 putative mercuric reductase; Provisional

Probab=98.27  E-value=7.8e-07  Score=90.44  Aligned_cols=43  Identities=16%  Similarity=0.270  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..||+||||+|.+|++||..|++.|++|+++|+++.+||.|..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            3699999999999999999999999999999999999998875

>PRK07190 hypothetical protein; Provisional

Probab=98.26  E-value=9.1e-07  Score=89.89  Aligned_cols=46  Identities=15%  Similarity=0.176  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~   65 (431)
                      ...+||+|||||++||++|+.|+++|.+|+|+||++.+  +|++..+.
T Consensus         3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~   50 (487)
T PRK07190          3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALN   50 (487)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeC
Confidence            34689999999999999999999999999999999875  46654443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.25  E-value=8.3e-07  Score=87.61  Aligned_cols=54  Identities=20%  Similarity=0.249  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      ..+.+.|.+.+.. .|++++++++|++|..+  ++. +.|++++|++++||.|| ++..
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG~  160 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADGA  160 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecCC
Confidence            4677778777777 49999999999999865  343 46777889899999988 5543

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.25  E-value=1.1e-06  Score=95.52  Aligned_cols=42  Identities=14%  Similarity=0.150  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...+|+|||+|++||+||..|+++|++|+|+|+++++||..+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            357999999999999999999999999999999999999876

>PRK06126 hypothetical protein; Provisional

Probab=98.24  E-value=1.2e-06  Score=90.80  Aligned_cols=48  Identities=8%  Similarity=0.127  Sum_probs=39.3

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~   65 (431)
                      +++..+||+|||||++||++|+.|++.|++|+|+|+++..  .+++..+.
T Consensus         3 ~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~   52 (545)
T PRK06126          3 ENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTS   52 (545)
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCC
Confidence            3455789999999999999999999999999999999753  34444443

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.24  E-value=9.9e-07  Score=91.58  Aligned_cols=41  Identities=22%  Similarity=0.402  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||||||+|++||+||+.++++|.+|+||||.+..||.+
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            46899999999999999999999999999999999999853

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.24  E-value=1e-06  Score=89.91  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ++.+.+.+.++..|.++++++.|++|...  ++. ..|++.+|+++.+|.||.
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~  272 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLY  272 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEE
Confidence            56778888888999999999999999764  333 457777899999999885

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.24  E-value=1.3e-06  Score=90.06  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      +.++||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            34689999999999999999999999999999999988774

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.24  E-value=1.1e-06  Score=87.46  Aligned_cols=45  Identities=22%  Similarity=0.330  Sum_probs=41.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +.+||+||||+|.+|..||.++++.|++|.++|+...+||-|-.+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            457999999999999999999999999999999999999988764

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.24  E-value=1e-06  Score=92.06  Aligned_cols=55  Identities=27%  Similarity=0.434  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~~  333 (431)
                      ..+..+|.+.++..|++++.+++|.+|..++.++++++|++   .+|+  +++||.||..
T Consensus       232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnA  291 (627)
T PLN02464        232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNA  291 (627)
T ss_pred             HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEEC
Confidence            57888999999999999999999999987511367777765   2444  5799999953

>PTZ00367 squalene epoxidase; Provisional

Probab=98.24  E-value=1.1e-06  Score=90.34  Aligned_cols=37  Identities=27%  Similarity=0.528  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...++||||||||++|+++|..|+++|++|+|+|++.
T Consensus        30 ~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         30 TNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            3356999999999999999999999999999999975

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.24  E-value=1.3e-06  Score=90.33  Aligned_cols=43  Identities=26%  Similarity=0.526  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..++||||||+|.+|++||+.++++|.+|+||||+..+||.+.
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            4479999999999999999999999999999999999998654

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.23  E-value=1.8e-05  Score=79.71  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p  334 (431)
                      ..+.+-|.+.+++.|++++.++ |..+..++ +|.+++|++++|++++||.|| |+.
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG  208 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDASG  208 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCC
Confidence            4677778888999999998875 88888774 788889999999999999999 653

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.23  E-value=9.8e-07  Score=86.90  Aligned_cols=34  Identities=12%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+||+|||||++||++|..|+++|++|+|+|+++
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            3799999999999999999999999999999975

>PRK12839 hypothetical protein; Provisional

Probab=98.23  E-value=1.4e-06  Score=90.24  Aligned_cols=45  Identities=22%  Similarity=0.349  Sum_probs=41.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ...++||||||+|.+||+||+.|+++|.+|+|+||+..+||.+..
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   49 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW   49 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence            345799999999999999999999999999999999999998653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.23  E-value=1.7e-06  Score=87.23  Aligned_cols=44  Identities=20%  Similarity=0.218  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ....+||+|||+|.+||+||..|++.|++|+|+|+++.+||.+.
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            34568999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.22  E-value=1.5e-06  Score=91.81  Aligned_cols=44  Identities=18%  Similarity=0.259  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            35579999999999999999999999999999999999998653

>PRK06753 hypothetical protein; Provisional

Probab=98.22  E-value=1.1e-06  Score=86.37  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=33.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ||+|||||++||++|..|+++|++|+|+||++.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            89999999999999999999999999999998764

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.22  E-value=1.1e-06  Score=86.91  Aligned_cols=55  Identities=20%  Similarity=0.217  Sum_probs=44.0

Q ss_pred             cchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeC-CCcEEEeCEEE-ECCC
Q 014049          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDPS  335 (431)
Q Consensus       278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI-~~p~  335 (431)
                      ...|-++|.+.+...+ .+++.+++|+.+..+  ++.+. |+++ +|++++||.|| +|..
T Consensus       103 ~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG~  160 (387)
T COG0654         103 RSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADGA  160 (387)
T ss_pred             hHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCCC
Confidence            5667777878777776 799999999999987  55554 7778 99999999999 5653

>PLN02507 glutathione reductase

Probab=98.21  E-value=1.4e-06  Score=88.90  Aligned_cols=52  Identities=15%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.++..|.++++++.|++|..+  ++. +.|++.+|+++.||.||..
T Consensus       244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a  295 (499)
T PLN02507        244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFA  295 (499)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEe
Confidence            466777777788899999999999999865  343 3566778889999999853

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.21  E-value=1.4e-06  Score=90.60  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ...||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            4579999999999999999999999999999999987764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.20  E-value=1.6e-06  Score=90.71  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++||||||+|++||+||+.++++|.+|+|+||....||
T Consensus         6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g   45 (626)
T PRK07803          6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA   45 (626)
T ss_pred             ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            3468999999999999999999999999999999987665

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.20  E-value=1.3e-06  Score=86.62  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=33.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999984

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.20  E-value=1.9e-06  Score=90.53  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        16 ~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++......+|+|||+|.+||+||..|++.|++|+|+|+++.+||.++.
T Consensus       304 ~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~  351 (639)
T PRK12809        304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF  351 (639)
T ss_pred             CcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence            333445679999999999999999999999999999999999998753

>PRK08244 hypothetical protein; Provisional

Probab=98.20  E-value=1.4e-06  Score=89.10  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC--CCcccccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS   65 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~--GG~~~t~~   65 (431)
                      ++||+|||||++||++|+.|+++|.+|+|+||++.+  .|+..++.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~   47 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLH   47 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEec
Confidence            389999999999999999999999999999998764  45555443

>PRK11445 putative oxidoreductase; Provisional

Probab=98.20  E-value=1.3e-06  Score=85.16  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=33.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      +|||+|||||++||++|..|+++ ++|+|+|+++..
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            38999999999999999999999 999999999865

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.19  E-value=1.3e-06  Score=87.78  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~   56 (431)
                      |||+|||||++||++|+.|++    +|++|+|+|+++.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~   38 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN   38 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence            799999999999999999999    8999999999654

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.19  E-value=1.8e-06  Score=89.72  Aligned_cols=42  Identities=31%  Similarity=0.263  Sum_probs=38.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ...++||||||+|.+||+||+.++++|.+|+|+||....||.
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          4 PVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             CccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            345689999999999999999999999999999999887774

>PRK07538 hypothetical protein; Provisional

Probab=98.19  E-value=1.5e-06  Score=86.79  Aligned_cols=35  Identities=14%  Similarity=0.356  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            38999999999999999999999999999998754

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.18  E-value=1.6e-06  Score=81.70  Aligned_cols=36  Identities=25%  Similarity=0.490  Sum_probs=33.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ....+||||||||.+|.+.|+.|+|.|.+|+|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            345789999999999999999999999999999996

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.18  E-value=1.4e-06  Score=86.58  Aligned_cols=51  Identities=24%  Similarity=0.169  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+...|++++.+++|++|..+  ++. +.|++++|+++.||.||.
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence            467777878777889999999999999865  444 467778899999999994

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.18  E-value=1.8e-06  Score=89.36  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||||||+|.+||+||+.++++|.+|+|+||....||.+
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s   44 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS   44 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence            46899999999999999999999999999999998877744

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.17  E-value=2e-06  Score=94.69  Aligned_cols=43  Identities=28%  Similarity=0.441  Sum_probs=40.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..+||+|||||++||+||..|+++|++|+|+|+++.+||....
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            4689999999999999999999999999999999999998764

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.17  E-value=2e-06  Score=82.15  Aligned_cols=38  Identities=16%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -+||||||||+||++|+.|+|+|++|+|||++.-+=|.
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~   40 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE   40 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence            58999999999999999999999999999998766333

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.16  E-value=2.3e-06  Score=93.86  Aligned_cols=43  Identities=14%  Similarity=0.108  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +..||+|||||++||+||..|++.|++|+|+|+.+.+||..+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            4579999999999999999999999999999999999998653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.16  E-value=2.1e-06  Score=89.52  Aligned_cols=43  Identities=19%  Similarity=0.213  Sum_probs=38.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      +...++||||||+|++||+||+.++++|.+|+|+||....||.
T Consensus         8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078          8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            3345689999999999999999999999999999998776664

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.16  E-value=2.1e-06  Score=88.76  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=36.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      +..+||+|||||++||++|..|++.|++|+|+|+++.++.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~   47 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD   47 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            4568999999999999999999999999999999987653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.15  E-value=2.9e-06  Score=86.11  Aligned_cols=43  Identities=16%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...+||+|||+|.+||+||..|++.|++|+|+|+.+.+||..+
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            3457999999999999999999999999999999999999764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.15  E-value=2.6e-06  Score=91.43  Aligned_cols=43  Identities=16%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ....||+|||||++||+||..|++.|++|+|+|+++.+||..+
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            3467999999999999999999999999999999999999865

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.14  E-value=2.1e-06  Score=87.12  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.++||||||||+.|+++|+.|++.  |++|+||||++.+|+..+.
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~   48 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSN   48 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCC
Confidence            4568999999999999999999984  8999999999887765443

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.14  E-value=2.4e-06  Score=89.23  Aligned_cols=41  Identities=17%  Similarity=0.131  Sum_probs=37.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||+|||+|.+||+||+.++++|.+|+|+||....||.+
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t   68 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHT   68 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCc
Confidence            46899999999999999999999999999999998877743

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.14  E-value=1.9e-06  Score=87.39  Aligned_cols=62  Identities=16%  Similarity=0.130  Sum_probs=45.8

Q ss_pred             cEEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCC--cEEEeCEEEEC
Q 014049          270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASG--QDILSHKLVLD  333 (431)
Q Consensus       270 ~~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G--~~i~Ad~VI~~  333 (431)
                      +.+.|.+|.   ..+.++|.+.++..|++|+++++|++|..+. ++. +.|++   .+|  .+++||+||+.
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A  235 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG  235 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence            356677773   6899999999999999999999999998751 333 33432   334  36899999854

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.14  E-value=3.1e-06  Score=88.04  Aligned_cols=45  Identities=22%  Similarity=0.401  Sum_probs=41.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+.++||||||+|.+|++||..++++|++|+||||++.+||.+..
T Consensus         9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~   53 (581)
T PRK06134          9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW   53 (581)
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence            344799999999999999999999999999999999999998664

>PRK07588 hypothetical protein; Provisional

Probab=98.14  E-value=2.1e-06  Score=85.07  Aligned_cols=34  Identities=12%  Similarity=0.252  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3899999999999999999999999999999864

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.14  E-value=2.2e-06  Score=85.89  Aligned_cols=58  Identities=10%  Similarity=0.168  Sum_probs=43.4

Q ss_pred             eecCCc-chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEE-eCCCc--EEEeCEEEE
Q 014049          273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL  332 (431)
Q Consensus       273 ~p~gG~-~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~--~i~Ad~VI~  332 (431)
                      ++.... .++.++|.+.++. .|++|+++++|.+|..+  +++++||. ..+|+  ++.|+.||+
T Consensus       121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL  183 (433)
T PRK06175        121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL  183 (433)
T ss_pred             ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence            444433 4688888877765 59999999999999876  77888865 33554  589999985

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.14  E-value=2.2e-06  Score=86.94  Aligned_cols=52  Identities=12%  Similarity=0.180  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      .++.+.+.+.++..|.++++++.|++|..+  ++....|++.+|+++.+|.||.
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~  282 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMM  282 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEE
Confidence            577888888889999999999999999764  3333466777888999999885

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.14  E-value=2.7e-06  Score=95.00  Aligned_cols=42  Identities=24%  Similarity=0.389  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+||||||+|.+||+||+..+++|.+|+||||.+..||.+.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            358999999999999999999999999999999999999753

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.13  E-value=2.5e-06  Score=83.71  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=35.1

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCc
Q 014049           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~   60 (431)
                      ||+|||||++||++|..|+++  |++|+|+|+.+..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999998  9999999999988874

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.13  E-value=2.2e-06  Score=87.52  Aligned_cols=41  Identities=17%  Similarity=0.178  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..|+|||||.+||+||..|.+.|.+|+++||++.+||.|+.
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            46999999999999999999999999999999999999974

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.12  E-value=3.3e-06  Score=85.05  Aligned_cols=43  Identities=16%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ...+|+|||||.+||.||..|++  .|++|+|+|+.+.+||..+.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            35789999999999999999987  79999999999999998875

>PRK05868 hypothetical protein; Validated

Probab=98.12  E-value=2.7e-06  Score=83.61  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            48999999999999999999999999999999764

>PLN02546 glutathione reductase

Probab=98.12  E-value=2.6e-06  Score=87.60  Aligned_cols=44  Identities=27%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC---------CCCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~---------~~~GG~~~t~   64 (431)
                      .+|||||||+|.+|..||..+++.|++|+++|++         ..+||-|-..
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~  130 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR  130 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence            3699999999999999999999999999999973         5688877654

>PRK02106 choline dehydrogenase; Validated

Probab=98.12  E-value=2.7e-06  Score=88.25  Aligned_cols=38  Identities=29%  Similarity=0.418  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~   56 (431)
                      +..+||+||||+|.+|+++|.+|++ +|++|+|||+...
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            4457999999999999999999999 8999999999964

>PRK10262 thioredoxin reductase; Provisional

Probab=98.11  E-value=2.7e-06  Score=81.92  Aligned_cols=42  Identities=12%  Similarity=0.198  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..+||+|||||.+||+||..|++.|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            4689999999999999999999999999999965 67887654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.11  E-value=3.4e-06  Score=85.34  Aligned_cols=43  Identities=19%  Similarity=0.204  Sum_probs=39.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...++|+|||||++||+||..|++.|++|+|+|+++++||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            3457999999999999999999999999999999999999754

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.11  E-value=4.2e-06  Score=86.96  Aligned_cols=43  Identities=28%  Similarity=0.471  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .++||||||+|.+|++||..++++|++|+||||++..||.+..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~   57 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT   57 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence            3689999999999999999999999999999999999997753

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.11  E-value=2.9e-06  Score=88.71  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||||||+|++||.||+.++++|.+|+|+||....||.+
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s   89 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHT   89 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCch
Confidence            35899999999999999999999999999999998877743

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.10  E-value=3.3e-06  Score=86.71  Aligned_cols=41  Identities=17%  Similarity=0.340  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...|||+|||||++||+||.+|++.|++|+|+|.+  +||.+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~  249 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL  249 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence            34699999999999999999999999999999864  999875

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.10  E-value=3.1e-06  Score=88.69  Aligned_cols=40  Identities=28%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .++||||||+|.+||+||+.++++|.+|+|+||+..+|+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            3589999999999999999999999999999999888754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.09  E-value=4.6e-06  Score=84.45  Aligned_cols=43  Identities=23%  Similarity=0.313  Sum_probs=39.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +..+|+|||+|.+||+||..|++.|++|+++|+++.+||..+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~  182 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF  182 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence            5579999999999999999999999999999999999997753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.08  E-value=3.4e-06  Score=88.63  Aligned_cols=53  Identities=17%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (431)
                      .+.|..+|.+.+...|++|+.++.|.++..+  +|+++||...   +|+  .+.|+.||+
T Consensus       157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL  214 (657)
T PRK08626        157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI  214 (657)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            4477788888888899999999999999987  7888887653   565  357999885

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.08  E-value=3.6e-06  Score=87.56  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC---CcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~GG~~   61 (431)
                      ..++||+|||+|.+||+||+.++++|   .+|+|+||....||.+
T Consensus         3 ~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          3 VLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            34689999999999999999999998   8999999999887743

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.07  E-value=3.5e-06  Score=83.73  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=32.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      -+|+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            58999999999999999999999999999998754

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.07  E-value=3.3e-06  Score=87.79  Aligned_cols=52  Identities=15%  Similarity=0.228  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..|.++|.+.++..|.+++.++.|.++..+  +|+++||..   .+|+  .+.|+.||+
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl  191 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF  191 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence            478888888888889999999999999876  788887753   3554  578999885

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.06  E-value=4.2e-06  Score=81.98  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .||+|||||++||.||+.|++.|++|+|+|+++...-
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s   39 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT   39 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence            5999999999999999999999999999998876643

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.06  E-value=3.7e-06  Score=86.68  Aligned_cols=41  Identities=22%  Similarity=0.309  Sum_probs=36.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ..++||||||+|++||+||+.++ +|.+|+|+||.+..||.+
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s   47 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS   47 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence            34689999999999999999986 599999999999888853

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.06  E-value=4.9e-06  Score=87.60  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...+|+|||+|++||+||..|++.|++|+|+|+++++||..+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            357999999999999999999999999999999999999875

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.06  E-value=4.1e-06  Score=87.44  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~t   63 (431)
                      +|||||||+|.+|..||..+++.|++|+++|+. +.+||-|-.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            699999999999999999999999999999984 579997664

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.05  E-value=4.2e-06  Score=86.98  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=35.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ||||||+|++||+||+.++++|.+|+|+||....||.+
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s   38 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT   38 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            89999999999999999999999999999999877754

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.05  E-value=4.3e-06  Score=82.25  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.8

Q ss_pred             cEEEECCChhHHHHHHHH--hhCCCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~L--a~~G~~V~vlE~~~~~   57 (431)
                      ||||||||++||++|.+|  ++.|.+|+++|++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8899999999999887

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.05  E-value=4.5e-06  Score=84.99  Aligned_cols=39  Identities=13%  Similarity=0.158  Sum_probs=37.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      |||||||+|.+|+++|..|+++|++|+++|++...||.+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999999755

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN02815 L-aspartate oxidase

Probab=98.04  E-value=4.3e-06  Score=86.70  Aligned_cols=38  Identities=24%  Similarity=0.367  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ++||||||+|++||+||+.++++| +|+||||....||.
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            589999999999999999999999 99999999998884

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.04  E-value=5e-06  Score=85.31  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...|||+|||||.+||+||.+|++.|++|+|+|.  ++||.+.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            4469999999999999999999999999999985  6999775

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.03  E-value=5.4e-06  Score=86.88  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=38.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCC--CCcccccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSLS   65 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~--GG~~~t~~   65 (431)
                      ++++||+|||||++||++|+.|++ +|.+|+|+|+++..  .|++-.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~   78 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIA   78 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEC
Confidence            457999999999999999999999 59999999998653  45554433

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.02  E-value=5.6e-06  Score=86.03  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ....+|+|||||++||++|..|+++|++|+|+||+.
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            345899999999999999999999999999999985

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.02  E-value=5e-06  Score=81.87  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ||+|||||++|+.||..|++.|++|+|+|+++..|-.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p   38 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTP   38 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCc
Confidence            8999999999999999999999999999998887653

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.02  E-value=5.3e-06  Score=82.87  Aligned_cols=35  Identities=17%  Similarity=0.409  Sum_probs=32.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYG   58 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~G   58 (431)
                      +|+|||||++||++|..|+++| .+|+|+||++.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            6999999999999999999998 5999999987764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.01  E-value=5.2e-06  Score=83.83  Aligned_cols=42  Identities=10%  Similarity=0.110  Sum_probs=37.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   62 (431)
                      +.+||||||||+.|+++|+.|++.  |++|+||||.+.+|-..+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence            468999999999999999999999  999999999778876544

>PRK06996 hypothetical protein; Provisional

Probab=98.01  E-value=6e-06  Score=82.04  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=35.6

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCC----CcEEEEccCCCC
Q 014049           17 PIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPFY   57 (431)
Q Consensus        17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G----~~V~vlE~~~~~   57 (431)
                      ++....+||+|||||++|+++|+.|+++|    ++|+|+|+.+..
T Consensus         6 ~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~   50 (398)
T PRK06996          6 SMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPA   50 (398)
T ss_pred             hccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCC
Confidence            45556799999999999999999999997    479999998753

>TIGR00551 nadB L-aspartate oxidase

Probab=98.01  E-value=6e-06  Score=84.17  Aligned_cols=52  Identities=17%  Similarity=0.228  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeCC-C--cEEEeCEEEE
Q 014049          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G--~~i~Ad~VI~  332 (431)
                      ..+.++|.+.+++ .|.+|+.++.|.+|..+  +++++||.+.+ +  ..++|+.||+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl  183 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL  183 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence            4788889888877 68999999999999876  67888887644 3  3689999885

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.00  E-value=6.2e-06  Score=84.41  Aligned_cols=40  Identities=18%  Similarity=0.294  Sum_probs=36.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||||||+|.+||+||..+++ |.+|+|+||.+..||.+
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            36899999999999999999976 99999999999888753

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.98  E-value=8.1e-06  Score=85.24  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG   59 (431)
                      .++||||||+|.+||+||+.++++  |.+|+|+||++..|+
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s   50 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS   50 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence            368999999999999999999998  999999999987544

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.97  E-value=1.1e-05  Score=82.20  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ...+|+|||+|++||+||..|++.|++|+|+|+.+++||....
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~  184 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY  184 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence            3469999999999999999999999999999999999997653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.95  E-value=8.3e-06  Score=82.90  Aligned_cols=42  Identities=31%  Similarity=0.358  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--------CCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~t   63 (431)
                      +||+||||+|.+|+.||..+++.|++|+++|+..        .+||.|-.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            4899999999999999999999999999999742        58887654

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.94  E-value=7.4e-06  Score=79.46  Aligned_cols=40  Identities=28%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEE-ccCCCCCCcccc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHL-DPNPFYGSHFSS   63 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vl-E~~~~~GG~~~t   63 (431)
                      ||||||||++|+.||+.+|+.|.+|+++ ++.+.+|....+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cn   41 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCN   41 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccch
Confidence            8999999999999999999999999999 777777765444

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.94  E-value=8.4e-06  Score=84.22  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      .++.+.|.+.+++.|++|++++.|.++..+ ++++++||..   .+|+  ++.|+.||.
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~-~~~~v~Gv~~~~~~~g~~~~i~AkaVIl  191 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVD-ENREVIGAIFLDLRNGEIFPIYAKATIL  191 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEe-CCcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence            468888888888899999999999999887 2344888753   4564  578999985

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.94  E-value=1e-05  Score=82.89  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=41.1

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++..++||||||+|.+||.||..++.+|.+|+++||....||.+..
T Consensus         2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~   47 (562)
T COG1053           2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA   47 (562)
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence            4556799999999999999999999999999999999999865543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.93  E-value=8.8e-06  Score=84.58  Aligned_cols=40  Identities=23%  Similarity=0.174  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (431)
                      ++||+|||+|++||+||+.++++  |.+|+|+||....||.+
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            58999999999999999999987  47999999998887744

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.93  E-value=9.7e-06  Score=82.13  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=41.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.++..|++++.+ .|..+..+  +++++||.+ +|+.++|+.||+
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL  169 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI  169 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence            478899999998999999875 78888765  788888886 677899999885

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.93  E-value=1e-05  Score=84.19  Aligned_cols=53  Identities=19%  Similarity=0.268  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCC---CcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~---g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..|.+.|.+.+...|.+|+.++.|.++..+ ++   |+++||..   .+|+  .+.|+.||+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  200 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLT-ETPSGPVAAGVVAYELATGEIHVFHAKAVVF  200 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence            468888988888899999999999999876 22   78888864   3555  478999885

>PRK08275 putative oxidoreductase; Provisional

Probab=97.92  E-value=9.9e-06  Score=83.88  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..+.+.|.+.++..|.+|+.++.|.+|..+ ++++++||..   .+|+  .+.|+.||+
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VIl  194 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTD-ADGRVAGALGFDCRTGEFLVIRAKAVIL  194 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEc-CCCeEEEEEEEecCCCcEEEEECCEEEE
Confidence            468888988888899999999999999875 2577888863   3565  478999884

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.91  E-value=1.1e-05  Score=79.84  Aligned_cols=52  Identities=17%  Similarity=0.133  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc--EEEeCEEEEC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~Ad~VI~~  333 (431)
                      ++.++|.+.++..|++|++++.|.++..+  +++++.|...+|+  .++||.||+.
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVLA  313 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVLA  313 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEEe
Confidence            79999999999999999999999999876  6666666655564  4899998853

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.91  E-value=1.2e-05  Score=84.74  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=47.0

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus         9 ~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      -|=+|--|+ ..+-..|.|||+|.+||+||..|-|+|+.|+|+||.+|+||....
T Consensus      1773 gwm~p~pp~-~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1773 GWMKPCPPA-FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             cCCccCCcc-cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            466665554 556689999999999999999999999999999999999998764

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.90  E-value=1.1e-05  Score=83.81  Aligned_cols=40  Identities=25%  Similarity=0.175  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (431)
                      ++||+|||+|++||+||..++++  |.+|+|+||....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            48999999999999999999987  58999999999888854

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.89  E-value=1.5e-05  Score=79.60  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=40.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +...|.|||+|.+||+||..|+++|++|+|+|+.+..||+...
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            4479999999999999999999999999999999999999885

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.88  E-value=1.2e-05  Score=74.50  Aligned_cols=60  Identities=18%  Similarity=0.159  Sum_probs=48.6

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcE--EEeCEEE-ECCCCCCCCC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLV-LDPSFTVPGS  341 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~--i~Ad~VI-~~p~~~~~~l  341 (431)
                      .+-++|.+..+..||.++.+.+|.+....  +|+++.|-+.++..  ++||.+| ++.++.-..|
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsffskGL  321 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFFSKGL  321 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccccccc
Confidence            67788999999999999999999999988  89999998888765  5788766 4565543333

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.88  E-value=1.3e-05  Score=82.61  Aligned_cols=40  Identities=18%  Similarity=0.324  Sum_probs=36.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++||||||+|++||+||+.+++. .+|+|+||....||.+
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t   46 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST   46 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence            458999999999999999999987 8999999999888843

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.86  E-value=1.2e-05  Score=76.47  Aligned_cols=44  Identities=16%  Similarity=0.195  Sum_probs=38.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----C--CCcEEEEccCCCCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~----~--G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +.+||+|||||.+||+||++|.+    +  -.+|.|+||...+||.+-|-
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSG  124 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSG  124 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecc
Confidence            46999999999999999998843    3  35899999999999988764

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.86  E-value=2.1e-05  Score=83.90  Aligned_cols=42  Identities=26%  Similarity=0.318  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .+..+|+|||+|++||+||.+|++.|++|+|+|+.+..|+..
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~  422 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPF  422 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccccc
Confidence            356799999999999999999999999999999998877653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.84  E-value=2.3e-05  Score=81.42  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...+|+|||+|.+||++|..|++.|++|+|+|+++.+||..+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            346899999999999999999999999999999999999765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.83  E-value=1.9e-05  Score=80.00  Aligned_cols=39  Identities=31%  Similarity=0.443  Sum_probs=35.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n   40 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN   40 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence            79999999999999999999999999999974 7776654

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.82  E-value=2.5e-05  Score=77.85  Aligned_cols=42  Identities=14%  Similarity=0.062  Sum_probs=38.0

Q ss_pred             cccEEEECCChhHHHHHHHH-hhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~L-a~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ...|+|||||.+||.||..| ++.|++|+|+|+.+.+||..+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~   81 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY   81 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence            45799999999999999965 5679999999999999999885

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.82  E-value=2.1e-05  Score=70.08  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ||||||||.+|++||..|++.|++|+++|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999977654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.81  E-value=2e-05  Score=81.13  Aligned_cols=35  Identities=34%  Similarity=0.597  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..+||+||||+|.+|.++|.+|+.+|++|+|||+.
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            45799999999999999999999999999999996

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.79  E-value=3e-05  Score=75.73  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=38.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+|+|||+|.+||.+|..|++.|++|+++|+.+++||...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            35899999999999999999999999999999999999764

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.77  E-value=0.0013  Score=64.56  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=46.2

Q ss_pred             EeecCCc----chHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEEEEEeC-----CCcEEEeCEEEECC
Q 014049          272 IYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLA-----SGQDILSHKLVLDP  334 (431)
Q Consensus       272 ~~p~gG~----~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-----~G~~i~Ad~VI~~p  334 (431)
                      .+...|+    |+|.+.|.+.+... |.+++++++|+.|.... +|+ +.|++.     +.++++|+.|++++
T Consensus       170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvGA  240 (488)
T PF06039_consen  170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVGA  240 (488)
T ss_pred             eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEECC
Confidence            4556664    79999999988877 99999999999999873 453 555542     23578999998753

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.77  E-value=4.3e-05  Score=57.26  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=33.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .|+|||||+.|+-+|..|++.|.+|+++|+++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            38999999999999999999999999999999998

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.73  E-value=2.6e-05  Score=73.63  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=41.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      .+|||+|||+|.+|-.||...++.|.+...+|++..+||-|-..
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnv   81 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNV   81 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeec
Confidence            46999999999999999999999999999999999999987653

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.72  E-value=3.4e-05  Score=80.24  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.9

Q ss_pred             cEEEECCChhHHHHHHHHh----hCCCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La----~~G~~V~vlE~~~~~   57 (431)
                      ||||||+|++||+||+.++    ++|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            8999999999999999998    789999999998863

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.72  E-value=3.6e-05  Score=78.09  Aligned_cols=52  Identities=13%  Similarity=0.147  Sum_probs=41.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+..+..|.++++++.|++|..+  ++. +.|.+.+|+++.+|.||+.
T Consensus       218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~l~~D~vl~a  269 (466)
T PRK07845        218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDG-VVVTLTDGRTVEGSHALMA  269 (466)
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCE-EEEEECCCcEEEecEEEEe
Confidence            456777778888899999999999999765  344 3466778999999998853

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.71  E-value=3.9e-05  Score=78.52  Aligned_cols=38  Identities=34%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      |||||||+|++|+.||..+++.|.+|+++|++...+|.
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~   38 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK   38 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence            79999999999999999999999999999998554443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK13984 putative oxidoreductase; Provisional

Probab=97.71  E-value=4.3e-05  Score=80.15  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=39.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ...+|+|||+|.+|++||..|++.|++|+|+|+++.+||..+
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            457999999999999999999999999999999999999765

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.70  E-value=3.1e-05  Score=80.73  Aligned_cols=36  Identities=25%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      |||||+|.+||+||+.++++|.+|+|+||.+.+||.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g   36 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA   36 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence            699999999999999999999999999999977654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.69  E-value=3.5e-05  Score=71.67  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCC---------CCcccccChh
Q 014049           21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFY---------GSHFSSLSIA   67 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~---------GG~~~t~~~~   67 (431)
                      .++||+|||+|..|++.|..|.+    .|.+|+|+|+++.|         ||-|..|++.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp  144 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP  144 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence            47899999999999999998854    47999999999975         6666666654

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.69  E-value=3.7e-05  Score=78.82  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=41.9

Q ss_pred             chHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEEEEEeCC-Cc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~Ad~VI~  332 (431)
                      ..+.++|.+.++.. |++|+.++.|.++..+  +|+++||.+.+ ++  ++.|+.||+
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL  191 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL  191 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence            47889998888765 8999999999999876  78888987643 33  589999885

>TIGR03452 mycothione_red mycothione reductase

Probab=97.68  E-value=3.8e-05  Score=77.54  Aligned_cols=40  Identities=25%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +||+||||+|.+|..||+.  ++|++|+++|+ +.+||.|-.+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n~   41 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLNV   41 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeecc
Confidence            5999999999999998754  47999999998 5789987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=97.68  E-value=4e-05  Score=77.37  Aligned_cols=40  Identities=25%  Similarity=0.503  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +||+||||+|.+|.+||.+  ++|++|+++|++ .+||-|-.+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC~n~   40 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTCLNV   40 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcccCc
Confidence            4899999999999988876  469999999984 688877654

>PLN02785 Protein HOTHEAD

Probab=97.68  E-value=4.7e-05  Score=78.91  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...||+||||+|.+|+++|.+|++ +++|+|||+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            346999999999999999999999 699999999864

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.67  E-value=3.9e-05  Score=82.42  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~   57 (431)
                      +|+|||||++||+||..|+++  |++|+|+|+++..
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~   37 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY   37 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence            799999999999999999998  8999999999873

>TIGR01810 betA choline dehydrogenase

Probab=97.67  E-value=3.6e-05  Score=79.47  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (431)
                      |+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            8999999999999999999999 69999999864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.66  E-value=5.8e-05  Score=82.48  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .++||||||+|.+||.||+.++++|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            368999999999999999999999999999999886

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.57  E-value=0.00097  Score=63.05  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=38.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.++..+-|||+|++||++|..|-|    .|.++.+||--+..||..-.
T Consensus        19 ~VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          19 NVDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             ccccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence            4556789999999999999999966    46799999999999997654

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.34  E-value=0.00016  Score=71.63  Aligned_cols=35  Identities=37%  Similarity=0.519  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      +..|||||||||++|+-||.+.||.|.+++++=-+
T Consensus         2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            34699999999999999999999999999988665

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.34  E-value=0.00015  Score=66.87  Aligned_cols=47  Identities=23%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049           17 PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        17 ~~~~~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.....||.||||+|+.||+.|..|.-+  +.+|.|||+....+=..+.
T Consensus        43 s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSg   91 (453)
T KOG2665|consen   43 SISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSG   91 (453)
T ss_pred             ccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecc
Confidence            3445579999999999999999999887  9999999999876644433

>PRK09897 hypothetical protein; Provisional

Probab=97.27  E-value=0.0003  Score=71.91  Aligned_cols=38  Identities=11%  Similarity=0.058  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCC-Cc
Q 014049           23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYG-SH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~G-G~   60 (431)
                      ++|+|||+|.+|+++|..|.+.+  .+|+|+|++..+| |.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~   42 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM   42 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence            58999999999999999998865  4899999999999 65

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.22  E-value=0.00038  Score=64.44  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=36.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      -|||||+|++||+|+-.+-..|-.|++||++...||+..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            699999999999999999999989999999999999754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.17  E-value=0.00048  Score=68.39  Aligned_cols=50  Identities=12%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+.+.+.+.+++.|.++++++.|++|..   ++. +.|++.+|+++.||.||+.
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a  236 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYG  236 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEEC
Confidence            4556677778889999999999999853   232 4577889999999999964

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=97.15  E-value=0.00056  Score=69.46  Aligned_cols=39  Identities=31%  Similarity=0.374  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY   57 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~   57 (431)
                      ....||.||||||-+|++.|++|++. -++|++||+...+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            34579999999999999999999997 6899999998776

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.11  E-value=0.00048  Score=67.69  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ||+|||+|++||++|..|++. ++|+||=|...-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999999 999999998776

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.03  E-value=0.00061  Score=68.71  Aligned_cols=51  Identities=16%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.++..|.+++++++|.+|..   +++...|.+ +++++.||.||..
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a  241 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVA  241 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEEC
Confidence            46778888888899999999999999953   445556665 5567999998864

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.93  E-value=0.0013  Score=61.74  Aligned_cols=45  Identities=22%  Similarity=0.241  Sum_probs=41.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      ...||..|||+|-+|+++|++.+.-|.+|.++|..-.+||-|-..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~   62 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV   62 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence            347999999999999999999999999999999999999987653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.93  E-value=0.00095  Score=67.19  Aligned_cols=48  Identities=13%  Similarity=0.132  Sum_probs=38.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.++++++.|++|.    ..   .|++++|+++.+|.||..
T Consensus       189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a  236 (438)
T PRK13512        189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEG  236 (438)
T ss_pred             HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEEC
Confidence            3677778888889999999999999984    22   356678889999998853

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.93  E-value=0.00095  Score=66.89  Aligned_cols=47  Identities=23%  Similarity=0.150  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+.+.+.+.+++.|.+++++++|++|.    .+   .|++++|+++.||.||..
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~----~~---~v~~~~g~~i~~d~vi~~  275 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVL----DK---EVVLKDGEVIPTGLVVWS  275 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEe----CC---EEEECCCCEEEccEEEEc
Confidence            567777888899999999999999984    22   366789999999998854

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.92  E-value=0.0009  Score=66.45  Aligned_cols=40  Identities=25%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .+++|||+|..||.+|..|+++|++|+++|+.+++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            5999999999999999999999999999999999999986

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00089  Score=62.48  Aligned_cols=34  Identities=35%  Similarity=0.411  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP   53 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (431)
                      ..+||.||||+|-+||+||...+.-|.+|.+||-
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            3469999999999999999999999999999996

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.79  E-value=0.00043  Score=60.30  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=35.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCccc
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   62 (431)
                      -||||||+|-+||+||+..+++  ..+|.++|+.-.+||-++
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            5999999999999999999865  589999999999988654

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.0015  Score=63.72  Aligned_cols=35  Identities=34%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..+|||||||||++|+-||++.||-|-+.++|-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            45799999999999999999999999998887654

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.76  E-value=0.0013  Score=61.15  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      --|.|||||++|+-||+.++++|..|.++|.++.=+--+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa   42 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA   42 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence            458999999999999999999999999999997766433

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.74  E-value=0.0045  Score=60.34  Aligned_cols=57  Identities=18%  Similarity=0.215  Sum_probs=50.4

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF  336 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~  336 (431)
                      .-.+.+.|.+.++.+|++|++++.|+.|+.+  ++.+.+|++++|+++.||+||++|-.
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr  228 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR  228 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence            4577788999999999999999999999997  77778999999999999999987653

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.72  E-value=0.0057  Score=59.02  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=50.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.|.+|.   ..+.++|.+.+.+.|++++.+++|+.|..+  ++++++|.+.+| +++||+||+.
T Consensus       126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  188 (337)
T TIGR02352       126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVLA  188 (337)
T ss_pred             EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEEc
Confidence            55677773   789999999999999999999999999876  677788887666 7999998853

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.47  E-value=0.003  Score=53.88  Aligned_cols=32  Identities=25%  Similarity=0.450  Sum_probs=28.4

Q ss_pred             EEECCChhHHHHHHHHhhC-----CCcEEEEccCCCCC
Q 014049           26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYG   58 (431)
Q Consensus        26 iIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~G   58 (431)
                      +|||+|++|++++..|.+.     ..+|+|+|+++. |
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G   37 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-G   37 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-c
Confidence            5999999999999999888     578999999666 5

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=96.46  E-value=0.0017  Score=59.33  Aligned_cols=42  Identities=7%  Similarity=0.177  Sum_probs=38.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~   62 (431)
                      ....|+|||+|+.|..+|++|++.+      ..++++|+....||...
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            3468999999999999999999999      89999999999998654

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.40  E-value=0.0035  Score=55.03  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||.|..||.+|+.||++|++|+.+|.+..
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            589999999999999999999999999999874

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.35  E-value=0.0042  Score=59.71  Aligned_cols=39  Identities=31%  Similarity=0.564  Sum_probs=33.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC----CCcEEEEccC--CCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPN--PFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~--~~~GG   59 (431)
                      ..|||||+|||+.|++.|+.|..+    -+||++||..  +..|+
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~   79 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGD   79 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccc
Confidence            479999999999999999999864    5799999999  44444

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.21  E-value=0.0059  Score=59.81  Aligned_cols=46  Identities=26%  Similarity=0.357  Sum_probs=37.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-EEEeCEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLV  331 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI  331 (431)
                      .++++...+..+++|.+|+++++|++|..   +    +|++++|+ +|.|+.||
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvv  255 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVV  255 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEE
Confidence            46667777888999999999999999953   2    46677888 49999999

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.21  E-value=0.005  Score=60.31  Aligned_cols=49  Identities=18%  Similarity=0.217  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~  335 (431)
                      .+.+.+.+.+++.|.++++++.|++|.    .+   .|++.+|+++.+|.||..+.
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G  240 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG  240 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence            466777788889999999999999883    23   46678899999999996443

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=96.16  E-value=0.0064  Score=57.87  Aligned_cols=42  Identities=10%  Similarity=0.015  Sum_probs=38.1

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ...|.|||+|.+|+.+|..|-+  .+..|.++|+.+.++|..+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence            4589999999999999998877  47999999999999999886

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.05  E-value=0.0074  Score=51.52  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||||-.|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999999987

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.99  E-value=0.0078  Score=59.73  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            469999999999999999999999999999999987654

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.84  E-value=0.026  Score=55.67  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=48.3

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      +++|.+|.   ..+.++|.+.+.+ |++++.+++|.+|..+  +++ ++|++.+|++++||+||.
T Consensus       124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~  184 (381)
T TIGR03197       124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVL  184 (381)
T ss_pred             eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEE
Confidence            56777774   6888999988888 9999999999999875  454 678888888899999884

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.83  E-value=0.011  Score=51.59  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||+|..|...|..++++|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            378999999999999999999999999999654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.79  E-value=0.012  Score=58.12  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=34.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhC----CCcEEEEccCCCCCCccc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~----G~~V~vlE~~~~~GG~~~   62 (431)
                      +++|+|||+|++|+..|..|.+.    ++ +.|+|++...|+-..
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gia   44 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIA   44 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCcc
Confidence            37899999999999999999775    33 999999999997554

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=0.0059  Score=57.37  Aligned_cols=40  Identities=20%  Similarity=0.345  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..|||+|||+|.+|-+||.+.||+|.+.=++  .+|.||...
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvl  249 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVL  249 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeec
Confidence            4699999999999999999999999987654  357888654

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.74  E-value=0.0053  Score=60.95  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=37.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      +|||+|||||-.|.-+|.-.+-+|.+|.++|++|.--|-.+
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             cccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence            59999999999999999999999999999999998766443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.015  Score=59.30  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4799999999999999999999999999998864

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.71  E-value=0.0075  Score=58.41  Aligned_cols=35  Identities=31%  Similarity=0.418  Sum_probs=28.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (431)
                      .||+|+||.|+.+|+.|+.|...+ .+++.||+++.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            589999999999999999999987 99999999875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.67  E-value=0.015  Score=57.39  Aligned_cols=51  Identities=18%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+.+.+.+.++..|.+++++++|++|..+  ++. +.|++.+|+++.||.||+.
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a  234 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAA  234 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEEC
Confidence            46667777788899999999999999764  333 4677889999999999954

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.50  E-value=0.015  Score=58.91  Aligned_cols=34  Identities=26%  Similarity=0.132  Sum_probs=32.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .|.|||.|.+|++||..|+++|++|++.|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            4899999999999999999999999999998875

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.49  E-value=0.018  Score=56.80  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~  179 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS  179 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence            47999999999999999999999999999999887643

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=95.42  E-value=0.1  Score=50.91  Aligned_cols=112  Identities=20%  Similarity=0.189  Sum_probs=68.2

Q ss_pred             cCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHH
Q 014049          206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF  285 (431)
Q Consensus       206 ~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al  285 (431)
                      ...|..+||++.++++.+.+-+..+....+|.++.   .      +..+.-.+...+..+   | .+-++||...|++.|
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~------i~a~~G~vSla~a~~---g-l~sV~GGN~qI~~~l  134 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---N------IHAFAGLVSLAGATG---G-LWSVEGGNWQIFEGL  134 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---c------hhhhhhheeeeeccC---C-ceEecCCHHHHHHHH
Confidence            45688999999999987776555444445566531   1      223333333332212   2 568999999999987


Q ss_pred             HHHHHhcCcEEEeCcceeEEEEecCCCc-EEEEEeCC--CcE-EEeCEEEECC
Q 014049          286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQD-ILSHKLVLDP  334 (431)
Q Consensus       286 ~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~--G~~-i~Ad~VI~~p  334 (431)
                      .+   .-|+++ ++++|++|.....++. ...|...+  +.. -..|.||++.
T Consensus       135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAt  183 (368)
T PF07156_consen  135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIAT  183 (368)
T ss_pred             HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECC
Confidence            65   568899 9999999933212332 22343332  222 2459998653

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.38  E-value=0.021  Score=57.45  Aligned_cols=38  Identities=21%  Similarity=0.102  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++.++
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            47999999999999999999999999999999988654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.37  E-value=0.023  Score=54.46  Aligned_cols=36  Identities=22%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ++...|.|||+|--|...|.+|+++|++|+++.++.
T Consensus         3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            344579999999999999999999999999998864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.34  E-value=0.017  Score=55.19  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +|.|||+|+-|...|..|+++|++|+++|++..
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.29  E-value=0.02  Score=58.19  Aligned_cols=37  Identities=14%  Similarity=0.134  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      -.++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~  217 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP  217 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence            4799999999999999999999999999999988644

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.18  E-value=0.025  Score=57.39  Aligned_cols=37  Identities=16%  Similarity=0.148  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  207 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP  207 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence            5899999999999999999999999999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.16  E-value=0.028  Score=47.39  Aligned_cols=31  Identities=26%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           25 LIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      |.|+|+|-.|+..|++|+++|++|.++-++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.13  E-value=0.028  Score=56.78  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +...|+|||+|..|+.+|..|++.|++|+++|+++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            45689999999999999999999999999999975

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.10  E-value=0.027  Score=61.18  Aligned_cols=54  Identities=13%  Similarity=0.184  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (431)
                      +..+.+.+.++..|.++++++.|++|..+. .+....|++++|+++.||.||..+
T Consensus       188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~  241 (847)
T PRK14989        188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFST  241 (847)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECC
Confidence            445667778889999999999999997531 244567888899999999999643

>TIGR02053 MerA mercuric reductase

Probab=95.01  E-value=0.028  Score=56.98  Aligned_cols=38  Identities=24%  Similarity=0.163  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  204 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR  204 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence            47999999999999999999999999999999887643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=94.99  E-value=0.15  Score=49.96  Aligned_cols=65  Identities=20%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             EEeecC-CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC-cEEEeCEEEE-CCCCCCCC
Q 014049          271 LIYPIY-GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL-DPSFTVPG  340 (431)
Q Consensus       271 ~~~p~g-G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~Ad~VI~-~p~~~~~~  340 (431)
                      .+||.- -+.++.++|.+.+++.|++|+++++|+.|  +  +++ ..|++.++ ++++||+||+ .....+|.
T Consensus        77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~  144 (376)
T TIGR03862        77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVLALGGASWSQ  144 (376)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEEcCCCccccc
Confidence            578855 48899999999999999999999999999  3  333 56776543 5799999985 33333344

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.96  E-value=0.027  Score=56.13  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||.|..|+..|..|+++|++|+++|.+..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            4699999999999999999999999999998665

>PRK06370 mercuric reductase; Validated

Probab=94.93  E-value=0.034  Score=56.46  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            47999999999999999999999999999999988764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=94.90  E-value=0.033  Score=56.32  Aligned_cols=37  Identities=8%  Similarity=0.086  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~  203 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence            4799999999999999999999999999999998763

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.035  Score=49.11  Aligned_cols=43  Identities=16%  Similarity=0.284  Sum_probs=35.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEcc---CCC-CCCccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSSL   64 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~---~~~-~GG~~~t~   64 (431)
                      .-.|+|||+|.++-+||++++++-.+-+++|-   |+. +||...|-
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence            44899999999999999999999999999994   444 47766553

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.86  E-value=0.071  Score=47.21  Aligned_cols=52  Identities=21%  Similarity=0.161  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+-|.+.++.+|..+++++.|++|..+  +++ +.|++.++++++||+||++
T Consensus        82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA  133 (203)
T PF13738_consen   82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA  133 (203)
T ss_dssp             HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred             HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence            456677778888889899999999999987  444 7899999989999999953

...

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.83  E-value=0.035  Score=52.49  Aligned_cols=34  Identities=24%  Similarity=0.196  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3699999999999999999999999999998753

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.82  E-value=0.035  Score=56.44  Aligned_cols=38  Identities=16%  Similarity=0.082  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~  212 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA  212 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence            47999999999999999999999999999999987653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.79  E-value=0.036  Score=56.25  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .+++|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  210 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG  210 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence            47999999999999999999999999999999987543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.75  E-value=0.038  Score=56.02  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            4799999999999999999999999999999988754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.74  E-value=0.032  Score=52.76  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            589999999999999999999999999999864

>PRK07846 mycothione reductase; Reviewed

Probab=94.71  E-value=0.039  Score=55.79  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~  203 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR  203 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            5799999999999999999999999999999988753

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.71  E-value=0.031  Score=60.46  Aligned_cols=52  Identities=13%  Similarity=0.293  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (431)
                      .+.+.+.+.++.+|.++++++.|++|.-   +++..+|++++|+++.||.||..+
T Consensus       183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~  234 (785)
T TIGR02374       183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAA  234 (785)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECC
Confidence            3455666777889999999999999964   345678888999999999999643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.70  E-value=0.04  Score=52.04  Aligned_cols=34  Identities=21%  Similarity=0.289  Sum_probs=31.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .|.|||+|..|..-|..|+++|++|+++|.++..
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            6899999999999999999999999999988664

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.70  E-value=0.04  Score=55.97  Aligned_cols=38  Identities=18%  Similarity=0.134  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~  212 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG  212 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC
Confidence            47999999999999999999999999999999987543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.69  E-value=0.038  Score=55.67  Aligned_cols=38  Identities=11%  Similarity=0.049  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~  186 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL  186 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh
Confidence            37999999999999999999999999999999987643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.69  E-value=0.045  Score=51.87  Aligned_cols=34  Identities=26%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|...|..|+++|++|+++|++..
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998743

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.68  E-value=0.039  Score=56.04  Aligned_cols=38  Identities=11%  Similarity=0.021  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~  210 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN  210 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            47999999999999999999999999999998876543

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.66  E-value=0.043  Score=55.60  Aligned_cols=38  Identities=24%  Similarity=0.149  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .+++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  207 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL  207 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc
Confidence            47999999999999999999999999999999988753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=94.56  E-value=0.049  Score=55.22  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..++|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  213 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF  213 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence            47999999999999999999999999999999987653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.51  E-value=0.045  Score=54.86  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~  173 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL  173 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence            479999999999999999999999999999998874

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.47  E-value=0.041  Score=53.06  Aligned_cols=33  Identities=30%  Similarity=0.396  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ++.|||+|..||+.|+.||+.|++|+.+|....
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            689999999999999999999999999998753

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.42  E-value=0.047  Score=49.54  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +++|||+|--|...|..|++.|+.|+++|+++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            689999999999999999999999999999864

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.30  E-value=0.051  Score=51.19  Aligned_cols=34  Identities=24%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3699999999999999999999999999997754

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=94.30  E-value=0.059  Score=54.85  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  221 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA  221 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence            48999999999999999999999999999999987543

>PRK04148 hypothetical protein; Provisional

Probab=94.25  E-value=0.042  Score=45.09  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 888889999999999999999987

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.23  E-value=0.051  Score=58.82  Aligned_cols=37  Identities=22%  Similarity=0.145  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~  177 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA  177 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence            3699999999999999999999999999999887643

>TIGR03452 mycothione_red mycothione reductase

Probab=94.22  E-value=0.061  Score=54.39  Aligned_cols=37  Identities=19%  Similarity=0.207  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            4799999999999999999999999999999988754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.15  E-value=0.056  Score=51.73  Aligned_cols=34  Identities=35%  Similarity=0.380  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|..|..-|..++++|++|+++|.++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999998763

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=94.12  E-value=0.15  Score=52.43  Aligned_cols=59  Identities=22%  Similarity=0.288  Sum_probs=47.4

Q ss_pred             EEeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (431)
                      +++| .|   ...++.++.+.+.++|++|+.+++|++|..+  ++++++|++.   +|+  +++|+.||.
T Consensus       118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn  184 (516)
T TIGR03377       118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN  184 (516)
T ss_pred             EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence            5666 45   2578889999999999999999999999987  7777788763   343  689999984

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.97  E-value=0.062  Score=55.30  Aligned_cols=36  Identities=19%  Similarity=0.084  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~  388 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK  388 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence            489999999999999999999999999999988774

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=93.93  E-value=0.18  Score=51.39  Aligned_cols=41  Identities=15%  Similarity=0.214  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t   63 (431)
                      +||||||||+.|+++|+.|++.  |.+|+||||.+.+|...+.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~   43 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSN   43 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCC
Confidence            6999999999999999999997  9999999999887744333

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.92  E-value=0.045  Score=50.92  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=38.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC--------CCCCCcccccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS   65 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~--------~~~GG~~~t~~   65 (431)
                      -+|+|||+|..|.-||....--|-+|+++|.|        +.+|||..+..
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~  219 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY  219 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence            58999999999999999999999999999999        67889877754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.88  E-value=0.07  Score=50.51  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3589999999999999999999999999998764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.85  E-value=0.084  Score=53.61  Aligned_cols=39  Identities=21%  Similarity=0.196  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~  216 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE  216 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence            379999999999999999999999999999999877653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.81  E-value=0.08  Score=53.35  Aligned_cols=37  Identities=22%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4699999999999999999999999999999887654

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=93.81  E-value=0.17  Score=51.63  Aligned_cols=62  Identities=18%  Similarity=0.187  Sum_probs=45.7

Q ss_pred             cEEeecCC---cchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEEC
Q 014049          270 ALIYPIYG---QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (431)
Q Consensus       270 ~~~~p~gG---~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~~  333 (431)
                      +.+.|.+|   .+.+.++|.+.++..| ++|+++++|++|..+. +++ +.|++   .+|+  +++|++||+.
T Consensus       171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~-~~v~~~~~~~G~~~~i~A~~VVva  241 (494)
T PRK05257        171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGS-WTVTVKDLKTGEKRTVRAKFVFIG  241 (494)
T ss_pred             EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCC-EEEEEEEcCCCceEEEEcCEEEEC
Confidence            46677776   3689999999998887 5999999999998752 443 33443   3464  6999998853

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.77  E-value=0.074  Score=50.58  Aligned_cols=32  Identities=19%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|-.|...|..|+++|++|++++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            48999999999999999999999999999853

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=93.70  E-value=0.082  Score=53.37  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~  203 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR  203 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence            3699999999999999999999999999999888643

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=93.68  E-value=0.08  Score=55.83  Aligned_cols=38  Identities=16%  Similarity=0.162  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~  350 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL  350 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc
Confidence            37999999999999999999999999999999998753

>PTZ00058 glutathione reductase; Provisional

Probab=93.68  E-value=0.078  Score=54.95  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~  274 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR  274 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence            4799999999999999999999999999999998764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=93.67  E-value=0.089  Score=52.82  Aligned_cols=38  Identities=16%  Similarity=0.164  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -.++|||+|..|+-.|..+++-|-+|+|+|+.+++--.
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~  211 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG  211 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Confidence            35999999999999999999999999999999998763

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.60  E-value=0.072  Score=53.13  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            589999999999999999999999999998765

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=93.59  E-value=0.079  Score=57.63  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .++|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~  182 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA  182 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence            689999999999999999999999999999987644

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.55  E-value=0.084  Score=53.33  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=32.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4799999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=93.52  E-value=0.24  Score=51.80  Aligned_cols=52  Identities=23%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEe-CEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~A-d~VI~  332 (431)
                      ..|.++|.+.++..|++|+++++|++|..+  +++++||++. +++  +++| +.||+
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl  272 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL  272 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence            468899999999999999999999999887  7888888653 233  4789 88885

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.49  E-value=0.096  Score=49.71  Aligned_cols=34  Identities=35%  Similarity=0.420  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|...|..|+++|++|.++|++..
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            3599999999999999999999999999998763

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.47  E-value=0.13  Score=44.35  Aligned_cols=34  Identities=12%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             CcccEEEECCCh-hHHHHHHHHhhCCCcEEEEccC
Q 014049           21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        21 ~~~DviIIGaGl-~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ....|+|||+|- .|..+|.+|.+.|.+|.++.++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            357899999995 7999999999999999999986

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.43  E-value=0.085  Score=51.14  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +|.|||+|.-|...|..|+++|++|++++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            69999999999999999999999999999853

>PRK10262 thioredoxin reductase; Provisional

Probab=93.39  E-value=0.1  Score=50.15  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+..
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            47999999999999999999999999999998875

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.39  E-value=0.089  Score=54.17  Aligned_cols=35  Identities=23%  Similarity=0.140  Sum_probs=33.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .+|+|||||.+|+-+|..|+..|.+|+++++.+.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            48999999999999999999999999999998876

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.38  E-value=0.1  Score=49.73  Aligned_cols=33  Identities=15%  Similarity=0.206  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+|.|||+|--|...|++|+++|.+|+++.+..
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            469999999999999999999999999999963

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.37  E-value=0.1  Score=49.83  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC-CCC
Q 014049           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF-YGS   59 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~-~GG   59 (431)
                      +|.|||+|..|+++|..|+++|  ..|.++|++.. ..|
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g   40 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEG   40 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhh
Confidence            5899999999999999999999  58999998753 444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02507 glutathione reductase

Probab=93.36  E-value=0.098  Score=53.58  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .+|+|||+|..|+-.|..|++.|.+|+++|+.+++-
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l  239 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL  239 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence            479999999999999999999999999999998764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.35  E-value=0.11  Score=49.76  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.34  E-value=0.097  Score=49.81  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (431)
                      .|.|||+|-.|...|..|+++|++|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            589999999999999999999999999987

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.28  E-value=0.12  Score=44.58  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=29.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|+|-.|+.||..|.+-|.+|+++|.+.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            579999999999999999999999999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.22  E-value=0.097  Score=54.40  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      -.|+|||+|..|+-.|..|++.|.+|+++++.+..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            47999999999999999999999999999998865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.21  E-value=0.1  Score=50.90  Aligned_cols=34  Identities=21%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~   56 (431)
                      -.|+|||+|..|+-+|..|++.|.+ |+|+++++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            3699999999999999999999997 999998765

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=93.17  E-value=0.36  Score=47.33  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=44.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPS  335 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~  335 (431)
                      -..+.+.+.+.++.....-.....|+.|..+  +++++||++.+|+.+.||.||. +.+
T Consensus        94 r~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   94 RDKYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEEeccc
Confidence            3456677777777766666678999999987  8999999999999999999885 444

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK06116 glutathione reductase; Validated

Probab=93.14  E-value=0.12  Score=52.34  Aligned_cols=36  Identities=11%  Similarity=0.041  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL  203 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence            479999999999999999999999999999988764

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.10  E-value=0.13  Score=49.52  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|--|...|..|+++|++|++++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            369999999999999999999999999999864

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.07  E-value=0.14  Score=51.59  Aligned_cols=38  Identities=16%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -.++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~  196 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR  196 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            37999999999999999999999999999999877644

>PRK07121 hypothetical protein; Validated

Probab=93.04  E-value=0.3  Score=49.97  Aligned_cols=55  Identities=27%  Similarity=0.396  Sum_probs=44.2

Q ss_pred             CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-Cc--EEEe-CEEEE
Q 014049          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL  332 (431)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-d~VI~  332 (431)
                      +...+.+.|.+.+++.|++|+++++|++|..+ ++|+++||+..+ |+  +++| +.||+
T Consensus       175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~~~~~i~a~k~VVl  233 (492)
T PRK07121        175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVD-DDGRVVGVEARRYGETVAIRARKGVVL  233 (492)
T ss_pred             chHHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence            34578899999999999999999999999886 257888987643 33  4788 88884

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.02  E-value=0.11  Score=52.60  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~   56 (431)
                      ..|.|||+|..||.+|+.||++|  ++|+.+|.+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~   37 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP   37 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence            35999999999999999999985  88999997654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.90  E-value=0.15  Score=48.62  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      .|.|||+|..|+..|..|+..|+ +|.++|.++.
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            68999999999999999999987 8999998544

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12831 putative oxidoreductase; Provisional

Probab=92.81  E-value=0.13  Score=52.28  Aligned_cols=34  Identities=18%  Similarity=0.063  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.|+|||+|..|+-+|..|++.|.+|++++++++
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            4899999999999999999999999999998764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=92.80  E-value=0.14  Score=49.20  Aligned_cols=32  Identities=19%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=92.80  E-value=0.36  Score=50.46  Aligned_cols=52  Identities=25%  Similarity=0.267  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-Cc--EEEe-CEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G~--~i~A-d~VI~  332 (431)
                      ..|.++|.+.++.+|++|+++++|.++..+  +++++||++.+ |+  ++.| +.||+
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl  276 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL  276 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence            468899999999999999999999999876  78899987654 33  4676 56774

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=92.78  E-value=0.16  Score=43.56  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|-|||.|..|...|..|.++|++|.+++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence            368999999999999999999999999999774

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02546 glutathione reductase

Probab=92.77  E-value=0.14  Score=53.17  Aligned_cols=37  Identities=8%  Similarity=-0.029  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            4799999999999999999999999999999988754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.62  E-value=0.16  Score=48.53  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|...|..|+++|++|.+++++..
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4699999999999999999999999999998753

>PRK13748 putative mercuric reductase; Provisional

Probab=92.60  E-value=0.15  Score=53.07  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.++|||+|..|+-.|..|++.|.+|++++++..
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  304 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL  304 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            4799999999999999999999999999998653

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=92.60  E-value=0.13  Score=47.62  Aligned_cols=33  Identities=15%  Similarity=0.088  Sum_probs=26.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CcEEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G-------~~V~vlE~~   54 (431)
                      ..+++|||+|..||++|..+.+.+       .+|+|++-+
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr   42 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR   42 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence            468999999999999999888855       467776644

>PRK14694 putative mercuric reductase; Provisional

Probab=92.54  E-value=0.17  Score=51.50  Aligned_cols=34  Identities=24%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.++|||+|..|+-.|..|++.|.+|+++++...
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~  212 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRV  212 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            4799999999999999999999999999997533

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.51  E-value=0.15  Score=48.06  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence            48999999999999999999999999999998755

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.45  E-value=0.17  Score=45.18  Aligned_cols=35  Identities=11%  Similarity=0.092  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +...|+|||+|-.|+..+..|.+.|.+|+|+..+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            34589999999999999999999999999998754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.42  E-value=0.16  Score=49.16  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~   57 (431)
                      +++.+|+|.||-|..-|..|+.|...+ .+++.|||.+.+
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            556799999999999999999999976 789999998864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=92.38  E-value=0.51  Score=47.09  Aligned_cols=34  Identities=35%  Similarity=0.529  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +|||+|||+|++|++||+.|+++|++|+++|++.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999874

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=92.26  E-value=0.11  Score=40.78  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +.+...|+|||+|-.|..-+..|.+.|.+|+|+-...
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            4456789999999999999999999999999999885

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.24  E-value=0.16  Score=47.76  Aligned_cols=32  Identities=16%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||.|.-|.+.|..|+++|++|.+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.19  E-value=0.17  Score=51.26  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|+|.|.+|+++|..|.+.|++|.+.|+++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999876

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.17  E-value=0.18  Score=41.79  Aligned_cols=32  Identities=28%  Similarity=0.468  Sum_probs=28.1

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ++|+|+|..+...|..++.-|++|+|+|.+..
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999954

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.14  E-value=0.18  Score=49.40  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            569999999999999999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14727 putative mercuric reductase; Provisional

Probab=92.12  E-value=0.2  Score=51.02  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~  221 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST  221 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            479999999999999999999999999999754

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.11  E-value=0.2  Score=44.58  Aligned_cols=36  Identities=11%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      +.+...|+|||||=.|...|..|.++|.+|+|+++.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            344568999999999999999999999999999753

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.11  E-value=0.17  Score=49.87  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=29.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .|.|||+|..|+..|..|+. |++|+++|.+...
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            48999999999999988885 9999999987653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=92.10  E-value=0.58  Score=46.25  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ...+||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~   41 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP   41 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence            45689999999999999999999999999999999764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.09  E-value=0.21  Score=42.50  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=30.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLD   52 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE   52 (431)
                      +.+...|+|||||-.|+.-|..|.++|.+|+|+.
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4456789999999999999999999999999995

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=92.02  E-value=0.7  Score=48.14  Aligned_cols=58  Identities=14%  Similarity=0.229  Sum_probs=46.5

Q ss_pred             eecCCc-chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       273 ~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ++..++ ..|.++|.+.++..|++|+.++.|.+++++  +|+++||..   .+|+  .+.|+.||+
T Consensus       112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL  175 (565)
T TIGR01816       112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL  175 (565)
T ss_pred             ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence            443344 378899999888899999999999999987  789999864   3565  478999995

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.01  E-value=0.24  Score=49.98  Aligned_cols=35  Identities=20%  Similarity=0.139  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..++|+|.|-+|+++|..|++.|++|.+.|.++..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            46999999999999999999999999999987764

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=91.95  E-value=0.55  Score=47.86  Aligned_cols=62  Identities=13%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             cEEeecCC---cchHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEE---eCCCc--EEEeCEEEEC
Q 014049          270 ALIYPIYG---QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD  333 (431)
Q Consensus       270 ~~~~p~gG---~~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~--~i~Ad~VI~~  333 (431)
                      +.+.|.++   .+.+.++|++.+.. .|++++++++|..|..+. ++. +.|+   +.+|+  +++||.||+.
T Consensus       172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A  242 (497)
T PRK13339        172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG  242 (497)
T ss_pred             EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence            45667776   36888999998864 589999999999997651 333 3444   34453  6999998853

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.91  E-value=0.2  Score=48.24  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +|.|||+|--|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            48999999999999999999999999999854

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.90  E-value=0.21  Score=48.82  Aligned_cols=45  Identities=24%  Similarity=0.423  Sum_probs=38.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccC--------CCCCCcccccChh
Q 014049           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN--------PFYGSHFSSLSIA   67 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~--------~~~GG~~~t~~~~   67 (431)
                      .+|+|||+|-.|.++|..|+++| .+|++.+|.        ...+++..+...+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD   55 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD   55 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence            47999999999999999999999 999999998        5566777666544

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=91.82  E-value=0.13  Score=41.97  Aligned_cols=39  Identities=15%  Similarity=0.288  Sum_probs=30.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ......+|.|||+|=.|-..|.+|.++|+.|.-+..++.
T Consensus         6 ~~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~   44 (127)
T PF10727_consen    6 TQAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSP   44 (127)
T ss_dssp             ------EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH
T ss_pred             cCCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCc
Confidence            344567999999999999999999999999988876543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.81  E-value=0.21  Score=51.16  Aligned_cols=31  Identities=10%  Similarity=0.051  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      +++|||+|..|+-.|..|++.|.+|++++++
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            7999999999999999999999999999974

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.81  E-value=0.27  Score=39.26  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=28.9

Q ss_pred             EEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      |||+|.|--|...|..|.+.|.+|+++|++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            69999999999999999998889999999864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=91.77  E-value=0.53  Score=47.25  Aligned_cols=50  Identities=22%  Similarity=0.334  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      .+-+.|.+.+++.|++|+.+++|++|..+  ++++++|+ ++|++++||.||.
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~  158 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL  158 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence            45566778888899999999999999876  67766666 5778899999884

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=91.73  E-value=0.2  Score=51.18  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=29.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      -.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            36999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.68  E-value=0.24  Score=50.00  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|+|-+|+++|..|+++|++|.+.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            458999999999999999999999999999765

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.65  E-value=0.2  Score=50.85  Aligned_cols=34  Identities=12%  Similarity=-0.184  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|+|+|.|-+|.+||..|.+.|.+|++.|.++.
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            3699999999999999999999999999997654

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.61  E-value=0.25  Score=49.95  Aligned_cols=39  Identities=15%  Similarity=0.137  Sum_probs=34.6

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +||...--|+|||.|-+|.++|..|.+.|++|.+.|.++
T Consensus         1 ~~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          1 SLMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            356666679999999999999999999999999999876

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=91.60  E-value=0.58  Score=34.57  Aligned_cols=42  Identities=17%  Similarity=0.203  Sum_probs=34.4

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG  322 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G  322 (431)
                      -..+.+.+.+..+..|.++++++.|++|..+ +++ +. |+++||
T Consensus        39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~-~~~-~~-V~~~~g   80 (80)
T PF00070_consen   39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKD-GDG-VE-VTLEDG   80 (80)
T ss_dssp             SHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTS-EE-EEEETS
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCE-EE-EEEecC
Confidence            3467788888889999999999999999987 244 55 888886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=91.58  E-value=0.23  Score=50.83  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|.-|..-|..|+++|++|+++|+++
T Consensus         6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            59999999999999999999999999999864

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=91.44  E-value=0.59  Score=48.87  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=42.3

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEeCE-EEE
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL  332 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad~-VI~  332 (431)
                      ...+...|.+.++..|++|+++++|+++.++ ++|+++||+.. +|+  +++|++ ||+
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d-~~g~V~Gv~~~~~~~~~~i~a~~aVil  269 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITD-PDGAVVGAVVEREGRTLRIGARRGVIL  269 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEEC-CCCcEEEEEEEeCCcEEEEEeceeEEE
Confidence            4567778888888999999999999999986 36899998654 343  467874 774

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.41  E-value=0.26  Score=44.56  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.||| +|.-|.+.|..|+++|++|.++.++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            489997 89999999999999999999997754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=91.36  E-value=0.19  Score=49.41  Aligned_cols=45  Identities=13%  Similarity=0.180  Sum_probs=36.4

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-----CCcEEEEccCCCCCCccc
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~-----G~~V~vlE~~~~~GG~~~   62 (431)
                      ++...+||+|||||.+|+.+|+.|+..     .++++++|.....=-+.-
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~   63 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLC   63 (486)
T ss_pred             HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhc
Confidence            345579999999999999999999864     689999998766544433

>PRK06847 hypothetical protein; Provisional

Probab=91.34  E-value=0.72  Score=45.18  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=34.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      +..||+|||||++||++|..|++.|++|+|+|+++.+
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~   39 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW   39 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4579999999999999999999999999999998764

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.32  E-value=0.21  Score=51.01  Aligned_cols=34  Identities=29%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|..|.-.|..|+++|++|+++|++..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3599999999999999999999999999998854

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=91.29  E-value=0.24  Score=49.39  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=33.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ...|.|+|-|.+|++||..|.+.|.+|++.|.++..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            357999999999999999999999999999988776

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.26  E-value=0.25  Score=50.09  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      -.|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            479999999999999999999998 8999998765

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.26  E-value=0.28  Score=49.91  Aligned_cols=43  Identities=28%  Similarity=0.383  Sum_probs=35.2

Q ss_pred             CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        11 ~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      |-+-.|.+...  .|.|+|.|-+|+++|..|.+.|.+|.+.|++.
T Consensus         6 ~~~~~~~~~~~--~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141          6 PLSALPQELSG--RVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             hhhhcccccCC--eEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            44445555544  48999999999999999999999999999753

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=91.25  E-value=0.72  Score=45.67  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~   56 (431)
                      .|||+|||||++||++|+.|+++|  ++|+|+|+++.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            389999999999999999999996  99999999975

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=91.24  E-value=0.7  Score=42.87  Aligned_cols=53  Identities=15%  Similarity=0.070  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-----------CcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-----------GQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-----------G~~i~Ad~VI~  332 (431)
                      .++.+.|.+.+...|++|++++.|..+..+ ++++++||.+..           ..+++|+.||.
T Consensus       104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~-~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~  167 (257)
T PRK04176        104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILR-EDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD  167 (257)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCceeceeeEe-CCCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence            578888999899999999999999999876 244788876531           24789999883

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.21  E-value=0.4  Score=42.67  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ....++|+|.|-.|..+|..|.+.|.+|++.|.+.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34579999999999999999999999999999773

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=91.20  E-value=0.68  Score=46.55  Aligned_cols=39  Identities=26%  Similarity=0.517  Sum_probs=36.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCccc
Q 014049           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~   62 (431)
                      ||||||+|++||+||+.++++| .+|+||||.+..||.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~   40 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSA   40 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCccc
Confidence            8999999999999999999999 99999999999998643

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.18  E-value=0.3  Score=48.05  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ....|.||| .|+-|-..|..|+++|+.|.++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            445799999 89999999999999999999999864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.15  E-value=0.25  Score=50.42  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|.|.+|++++..|.+.|.+|++.|.+.
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            369999999999999999999999999999753

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=90.90  E-value=0.73  Score=47.91  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEeC-EEEE
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~  332 (431)
                      ...|.+.|.+.+++.|++|+++++|++|+.+  +++++||+.. +|+  .+.|+ .||+
T Consensus       207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl  263 (557)
T PRK12844        207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL  263 (557)
T ss_pred             cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence            3578888999999999999999999999987  7899998763 454  47785 5774

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=90.83  E-value=0.31  Score=48.81  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=32.5

Q ss_pred             cEEEECCChhHHHHHHHHhh--------------CCCcEEEEccCCCCCCc
Q 014049           24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~--------------~G~~V~vlE~~~~~GG~   60 (431)
                      .++|||+|..|+-.|..|+.              .|.+|+++|+.+++...
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~  225 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS  225 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc
Confidence            79999999999999999875              58999999999887553

>PRK07045 putative monooxygenase; Reviewed

Probab=90.80  E-value=0.84  Score=45.02  Aligned_cols=55  Identities=16%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHH-hcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       280 ~l~~al~r~~~-~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      .|-+.|.+.++ ..|++++++++|+.|..+ +++.++.|++++|++++||.|| ++..
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~g~~~~~~~vIgADG~  163 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERD-ADGTVTSVTLSDGERVAPTVLVGADGA  163 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEEC-CCCcEEEEEeCCCCEEECCEEEECCCC
Confidence            56677777665 467999999999999876 3555567888899999999999 4543

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=90.80  E-value=0.69  Score=45.68  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      .+||+|||||++||++|+.|+++|++|+|+|++
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            479999999999999999999999999999998

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=90.75  E-value=0.84  Score=44.83  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=32.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~   57 (431)
                      ||+|||||++||++|..|+++| ++|+|+|+++.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            8999999999999999999999 999999998754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=90.73  E-value=0.3  Score=50.06  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|..|.-.|..|+++|++|+++|++..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4589999999999999999999999999998865

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=90.70  E-value=0.71  Score=48.25  Aligned_cols=52  Identities=27%  Similarity=0.402  Sum_probs=42.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC--Cc-EEEeC-EEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS--GQ-DILSH-KLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~--G~-~i~Ad-~VI~  332 (431)
                      .+|.++|.+.+++.|++|+++++|+++..+  +++++||++.+  ++ .+.|+ .||+
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~--~g~V~GV~~~~~~~~~~i~a~k~VVl  269 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTE--GGRVVGARVIDAGGERRITARRGVVL  269 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEEcCCceEEEEeCCEEEE
Confidence            678899999899999999999999999987  78888987654  33 47786 5774

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.68  E-value=0.29  Score=46.34  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||.|..|...|..|+++|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            37899999999999999999999999999874

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=90.65  E-value=0.44  Score=39.39  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCc-EEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~   54 (431)
                      ...++|||+|=+|-+++..|++.|.+ |+|+-|+
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            45799999999999999999999987 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=90.59  E-value=0.39  Score=42.67  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (431)
                      ...|+|||+|--|...|..|+++|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            4679999999999999999999998 58888876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=90.56  E-value=0.92  Score=44.46  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=33.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ||+|||||++||++|..|+++|++|+|+||+..++
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   35 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA   35 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence            89999999999999999999999999999998875

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=90.50  E-value=0.31  Score=43.32  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|.|||||..|.-.|-..+.+|+.|.++|++.-
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            45799999999999999999999999999999864

>TIGR00292 thiazole biosynthesis enzyme

Probab=90.30  E-value=1.1  Score=41.47  Aligned_cols=52  Identities=19%  Similarity=0.135  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCC--cEEEEEeCC-----------CcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g--~~~gV~~~~-----------G~~i~Ad~VI~  332 (431)
                      .++.+.|.+.+.+.|++++.++.|+.+..+  ++  ++.||.+..           ..+++|+.||.
T Consensus       100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd  164 (254)
T TIGR00292       100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD  164 (254)
T ss_pred             HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence            477888888888999999999999999887  44  688887642           24789999883

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=90.29  E-value=0.38  Score=45.93  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~   56 (431)
                      .|+|||+|..|.++|..|+..|  .++.++|++..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            5899999999999999999999  58999999754

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.23  E-value=0.28  Score=52.48  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||||..|.-.|..++++|++|+++|.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998854

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=90.18  E-value=0.98  Score=47.01  Aligned_cols=53  Identities=25%  Similarity=0.350  Sum_probs=42.1

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCc--EEEeC-EEEE
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL  332 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~--~i~Ad-~VI~  332 (431)
                      ...+.+.|.+.++..|++|+++++|.+|..+  +++++||+.. +|+  +++|+ .||+
T Consensus       207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~--~g~v~Gv~~~~~g~~~~i~A~~~VIl  263 (557)
T PRK07843        207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVE--DGRVTGVHAAESGEPQLIRARRGVIL  263 (557)
T ss_pred             cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe--CCEEEEEEEEeCCcEEEEEeceeEEE
Confidence            3467788888888899999999999999886  7889888764 454  47886 4774

>PRK06175 L-aspartate oxidase; Provisional

Probab=90.12  E-value=1  Score=45.32  Aligned_cols=39  Identities=10%  Similarity=0.220  Sum_probs=35.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .++||||||+|.+||+||+.++ +|.+|+|+||.+..||.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            4689999999999999999975 79999999999998875

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=90.11  E-value=0.32  Score=49.47  Aligned_cols=33  Identities=30%  Similarity=0.455  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      -.|+|+|+|..||.|+..+...|-+|.++|.++
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999988775

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=90.10  E-value=0.35  Score=45.93  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            68999999999999999999999999999874

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=90.00  E-value=1.1  Score=44.37  Aligned_cols=35  Identities=37%  Similarity=0.621  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL   36 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence            47999999999999999999999999999999875

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=89.97  E-value=0.35  Score=52.30  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~   56 (431)
                      ..|||||+|..|+-+|..|.+.|.+ |++++++++
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            4799999999999999999999987 999998865

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=89.94  E-value=1.2  Score=43.69  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +.++||||||||+.||++|+.|+++|.+|+|+|++...+|.+
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~s   43 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGAA   43 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcch
Confidence            456899999999999999999999999999999998777443

>PRK10015 oxidoreductase; Provisional

Probab=89.93  E-value=1.1  Score=45.12  Aligned_cols=50  Identities=16%  Similarity=0.274  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      .+-+.|.+.+++.|++++.+++|+.|..+  ++++++|+. ++++++||.||.
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~--~~~v~~v~~-~~~~i~A~~VI~  158 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE--GNKVTGVQA-GDDILEANVVIL  158 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCEEEEEEe-CCeEEECCEEEE
Confidence            44455777788899999999999999876  677777764 566899999994

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=89.81  E-value=0.42  Score=45.22  Aligned_cols=32  Identities=28%  Similarity=0.327  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..|.|||||.-|---|..++.+|++|+++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            46899999999999999999988999999999

>PRK06834 hypothetical protein; Provisional

Probab=89.78  E-value=1.2  Score=45.53  Aligned_cols=54  Identities=17%  Similarity=0.208  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      ..+-+.|.+.++..|.+|+.+++|+.|..+  ++. +.|++.+|++++||.|| |+..
T Consensus       100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~--~~~-v~v~~~~g~~i~a~~vVgADG~  154 (488)
T PRK06834        100 NHIERILAEWVGELGVPIYRGREVTGFAQD--DTG-VDVELSDGRTLRAQYLVGCDGG  154 (488)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecCC
Confidence            456677888888889999999999999876  443 45777788899999988 5543

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=89.76  E-value=1.3  Score=41.48  Aligned_cols=51  Identities=12%  Similarity=0.129  Sum_probs=38.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI~  332 (431)
                      ..+-+.|.+.+++.|++++++++|+++..+  ++++ .|.+. ++++++||.||.
T Consensus        91 ~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~--~~~~-~~~~~~~~~~~~a~~vv~  142 (295)
T TIGR02032        91 DAFDEQLAERAQEAGAELRLGTTVLDVEIH--DDRV-VVIVRGGEGTVTAKIVIG  142 (295)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCcEEeeEEEe--CCEE-EEEEcCccEEEEeCEEEE
Confidence            356677888888899999999999999876  4443 34333 456899999884

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.72  E-value=0.38  Score=45.76  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             EEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      |.|||+|..|...|..|+..|. +|.++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5799999999999999999987 999999985

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK06223 malate dehydrogenase; Reviewed

Probab=89.72  E-value=0.47  Score=45.28  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      ..|.|||+|..|...|..|+..|. +|.++|.+..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            479999999999999999999876 9999999655

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.65  E-value=0.39  Score=48.05  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.|.|||-|.+|.++|..|.+.|++|.+.|.+..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            3699999999999999999999999999997653

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=89.63  E-value=0.87  Score=45.14  Aligned_cols=53  Identities=23%  Similarity=0.286  Sum_probs=47.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      -.|.+.+....+..|.++++++.+.++.-. ++|+++-|.+.+|.++.||.||+
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~-~~Gev~~V~l~dg~~l~adlvv~  307 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGN-SDGEVSEVKLKDGKTLEADLVVV  307 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccC-CCCcEEEEEeccCCEeccCeEEE
Confidence            467788888899999999999999999876 36899999999999999999994

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=89.58  E-value=1.4  Score=46.61  Aligned_cols=40  Identities=20%  Similarity=0.363  Sum_probs=36.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      +.|||||||||+.|+++|+.|+++|++|+|+|+++..+|-
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~Gt  109 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGT  109 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCc
Confidence            4599999999999999999999999999999999877663

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=89.57  E-value=0.39  Score=51.34  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=31.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||||..|.-.|..++++|++|+++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=89.52  E-value=0.63  Score=45.70  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=31.7

Q ss_pred             CCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           20 PTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .....|+|.|+ |+-|..++..|.++|++|+.+.+..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~   55 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK   55 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence            34567999998 9999999999999999999998753

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=89.36  E-value=0.55  Score=43.66  Aligned_cols=40  Identities=18%  Similarity=0.207  Sum_probs=33.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCcc
Q 014049           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF   61 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~   61 (431)
                      ...|+|||.|-.|..+|..|+++| .+++++|....--...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNl   70 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNT   70 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccc
Confidence            457999999999999999999999 7899999775544443

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.35  E-value=0.47  Score=48.63  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|+|.|-+|+++|..|.+.|++|.+.|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            359999999999999999999999999999865

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=89.32  E-value=0.43  Score=48.42  Aligned_cols=34  Identities=15%  Similarity=0.034  Sum_probs=31.1

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            36999999999999 59999999999999998765

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.30  E-value=0.4  Score=48.49  Aligned_cols=32  Identities=16%  Similarity=0.093  Sum_probs=28.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|.|.+|.+||..|.+ |.+|+|.|.+.
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~   38 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLK   38 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCC
Confidence            469999999999999999995 99999999653

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=89.27  E-value=0.85  Score=34.32  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC-CCcEEEEcc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP   53 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~   53 (431)
                      ...++|+|+|-.|..+|..|.+. +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            35799999999999999999998 688999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.23  E-value=0.47  Score=46.97  Aligned_cols=34  Identities=18%  Similarity=0.204  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.|+|+|+|.-|+.+|..|...|.+|+|+|.++.
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4799999999999999999999999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=89.22  E-value=1.4  Score=45.89  Aligned_cols=52  Identities=19%  Similarity=0.310  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..+.++|.+.+.+.|.+|+.++.|+++..+  +|+++||..   .+|+  .+.|+.||+
T Consensus       129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl  185 (566)
T TIGR01812       129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL  185 (566)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence            367888888888889999999999999987  788888764   3565  579999885

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=89.16  E-value=1.6  Score=45.51  Aligned_cols=60  Identities=18%  Similarity=0.228  Sum_probs=46.7

Q ss_pred             EeecCCc-chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       272 ~~p~gG~-~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      +++..+. ..|.++|.+.+.+.|.+|+.++.+.+++.+ ++|+++||..   .+|+  .+.|+.||+
T Consensus       118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL  183 (570)
T PRK05675        118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSKATVL  183 (570)
T ss_pred             EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence            3444433 478899998888899999999999999985 3689999864   3565  468999995

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=89.10  E-value=0.41  Score=48.39  Aligned_cols=34  Identities=12%  Similarity=0.092  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+|.|||.|..|...|..|+++|++|.+++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998755

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=89.06  E-value=0.5  Score=44.78  Aligned_cols=32  Identities=28%  Similarity=0.382  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999875

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=89.05  E-value=0.88  Score=45.03  Aligned_cols=43  Identities=16%  Similarity=0.348  Sum_probs=35.1

Q ss_pred             CCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           13 PPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        13 ~~~~~~~~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .++.+.+.+...|+|+|| |..|..++..|.++|++|.++.++.
T Consensus        51 ~~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         51 QSFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            344445555667999997 9999999999999999999998864

>PRK12839 hypothetical protein; Provisional

Probab=89.01  E-value=1.2  Score=46.50  Aligned_cols=53  Identities=28%  Similarity=0.363  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CCc-EEEe-CEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ-DILS-HKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~-~i~A-d~VI~  332 (431)
                      ..|.+.|.+.+++.|++|+++++|++|..+ ++|+++||+..  +|+ ++.+ +.||+
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~-~~g~V~GV~~~~~~g~~~i~aak~VVL  270 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTD-KNGRVTGVRVQGPDGAVTVEATRGVVL  270 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEeCCEEEE
Confidence            567888989899999999999999999875 36889998653  444 3444 77774

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=89.01  E-value=0.54  Score=44.62  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|+|||.|-.|..+|..|.+.|.+|++++++.
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3589999999999999999999999999999984

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.97  E-value=1.3  Score=46.17  Aligned_cols=52  Identities=15%  Similarity=0.106  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (431)
                      ..|.++|.+.+...|.+++.++.+.++..+  +|+++||...   +|+  .++|+.||+
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVL  192 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD--NKKVVGIVAMQMKTLTPFFFKTKAVVL  192 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE--CCEEEEEEEEECCCCeEEEEEeCeEEE
Confidence            468888988888889999999999999987  7999998754   333  578999995

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=88.91  E-value=0.5  Score=41.83  Aligned_cols=31  Identities=23%  Similarity=0.301  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      -+.|+|+|--|.+.|.+|+++|++|.+-=++
T Consensus         3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r   33 (211)
T COG2085           3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSR   33 (211)
T ss_pred             EEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence            4789999999999999999999999986443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=88.81  E-value=0.59  Score=42.97  Aligned_cols=35  Identities=17%  Similarity=0.180  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...++|+|+|.-+...|..++..|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            35899999999999999999999999999997765

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=88.75  E-value=0.69  Score=44.42  Aligned_cols=36  Identities=17%  Similarity=0.118  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~   57 (431)
                      ...|+|||+|..|...|..|+..|. +|.++|.++..
T Consensus         6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            3579999999999999999999996 89999988764

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.74  E-value=1.4  Score=46.60  Aligned_cols=48  Identities=23%  Similarity=0.343  Sum_probs=39.4

Q ss_pred             HHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049          283 QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (431)
Q Consensus       283 ~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (431)
                      +.|.+.++..|++|++++.|.++..+  +|+++||...   +|+  .+.|+.||+
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d--~g~V~GV~~~~~~~g~~~~i~AkaVVL  226 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVV--DGRARGIVARNLVTGEIERHTADAVVL  226 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCEEEE
Confidence            66666777889999999999999987  7899998764   454  578999995

>PRK07831 short chain dehydrogenase; Provisional

Probab=88.61  E-value=0.84  Score=42.18  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=28.3

Q ss_pred             cccEEEECC-C-hhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGT-G-LPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGa-G-l~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..-++|.|+ | --|...|..|+++|++|++.+++.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            356999997 5 478999999999999999987653

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=88.58  E-value=0.45  Score=51.06  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|..|.-.|..++.+|++|+++|.++.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            4699999999999999999999999999998864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PLN02256 arogenate dehydrogenase

Probab=88.50  E-value=0.66  Score=44.16  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=30.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|.|||.|.-|-+.|..|+++|++|.++++++
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            4579999999999999999999999999999875

>PRK07588 hypothetical protein; Provisional

Probab=88.47  E-value=1.2  Score=43.94  Aligned_cols=52  Identities=12%  Similarity=0.095  Sum_probs=38.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP  334 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p  334 (431)
                      ..|.+.|.+.+ ..|++|+++++|++|..+  ++. +.|++++|++++||.|| ++.
T Consensus       103 ~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~~d~vIgADG  155 (391)
T PRK07588        103 GDLAAAIYTAI-DGQVETIFDDSIATIDEH--RDG-VRVTFERGTPRDFDLVIGADG  155 (391)
T ss_pred             HHHHHHHHHhh-hcCeEEEeCCEEeEEEEC--CCe-EEEEECCCCEEEeCEEEECCC
Confidence            35556665543 347899999999999875  444 45788899999999999 444

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=88.35  E-value=0.85  Score=38.39  Aligned_cols=34  Identities=12%  Similarity=0.299  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (431)
                      ...++|||+|..|...|..|++.| ++|.+++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            357999999999999999999996 8899998864

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=88.35  E-value=0.48  Score=45.18  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+.|+|+|--|+..|++|+++|..|+++=+.++
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            589999999999999999999988888877764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.26  E-value=1.7  Score=42.75  Aligned_cols=54  Identities=20%  Similarity=0.097  Sum_probs=42.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      ..+-+.|.+.++.+|+..+++++|.++..+  ++. +.|++++|++++||.|| ++..
T Consensus       111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~a~~vI~AdG~  165 (388)
T PRK07494        111 WLLNRALEARVAELPNITRFGDEAESVRPR--EDE-VTVTLADGTTLSARLVVGADGR  165 (388)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCeeEEEEEc--CCe-EEEEECCCCEEEEeEEEEecCC
Confidence            467788888888887777999999999875  444 45778889999999998 4543

>PRK07190 hypothetical protein; Provisional

Probab=88.21  E-value=1.5  Score=44.76  Aligned_cols=54  Identities=15%  Similarity=0.161  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      ..+-+.|.+.+++.|++|+++++|+.|..+  ++. +.|.+.+|++++|+.|| ++..
T Consensus       109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~--~~~-v~v~~~~g~~v~a~~vVgADG~  163 (487)
T PRK07190        109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELN--QAG-CLTTLSNGERIQSRYVIGADGS  163 (487)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEc--CCe-eEEEECCCcEEEeCEEEECCCC
Confidence            345566777778899999999999999886  343 34556788899999999 4543

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=88.18  E-value=0.75  Score=46.34  Aligned_cols=36  Identities=25%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .+|+|||+|-+|...|..|++.|.+|+++=|++-..
T Consensus       176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            689999999999999999999999999998887655

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=88.17  E-value=1.4  Score=45.28  Aligned_cols=59  Identities=25%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             EEeecCCc--chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC---Cc--EEEeCEEEE
Q 014049          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---GQ--DILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~--~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G~--~i~Ad~VI~  332 (431)
                      +.|+.|-.  ..++.++++.++..|++++.+++|.+|..+  ++. ++|++.+   |+  +++|+.||.
T Consensus       145 ~~~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~--~~~-~~v~~~~~~~g~~~~i~a~~VVn  210 (508)
T PRK12266        145 FEYSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRE--NGL-WHVTLEDTATGKRYTVRARALVN  210 (508)
T ss_pred             EEEcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--CCE-EEEEEEEcCCCCEEEEEcCEEEE
Confidence            44544422  467778888889999999999999999875  443 5666543   53  689999994

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.10  E-value=0.68  Score=46.58  Aligned_cols=34  Identities=21%  Similarity=0.177  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||-|-+|.+++..|++.|++|++.|.+..
T Consensus         7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~   40 (438)
T PRK03806          7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT   40 (438)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            4689999999999999999999999999998653

>PLN02572 UDP-sulfoquinovose synthase

Probab=88.05  E-value=1.1  Score=45.25  Aligned_cols=44  Identities=23%  Similarity=0.241  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEcc
Q 014049           10 LPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDP   53 (431)
Q Consensus        10 ~~~~~~~~~~~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~   53 (431)
                      -|+.+..+-.-+...|+|.|| |+-|...+.+|+++|++|.++++
T Consensus        35 ~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~   79 (442)
T PLN02572         35 TPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN   79 (442)
T ss_pred             CCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            344333333333457999996 99999999999999999999985

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=88.02  E-value=1.9  Score=45.08  Aligned_cols=40  Identities=18%  Similarity=0.214  Sum_probs=35.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~   60 (431)
                      .++||||||+|++||+||+.++++|  .+|+|+||....||.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            4689999999999999999999875  899999999877774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	431
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		8e-30
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		9e-30
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		1e-29
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-29
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-29
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		1e-27
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		1e-27
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		8e-23

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  128 bits (321), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  127 bits (320), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 5   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 49
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 50  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 105
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 106 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 158
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 159 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 215
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 216 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 270
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 271 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 312
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 313 DANSCQIIIP 322

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 56/370 (15%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS+             TP   
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-------------TPL-- 51
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
             + LY   ++       + +  R++N+D+  P+ L      V ++L +  + YL+FK +
Sbjct: 52  --EELYKRFQLLEGPPETMGRG-RDWNVDLI-PKFLMANGQLVKMLLYTEVTRYLDFKVV 107
Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V         +EN+ +  
Sbjct: 108 EGSFVYKG-GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANF------DENDPKTF 160
Query: 203 E--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           E  +  ++   +   K  L   +     +A+A+   D  + +  L+T   INR+ LY+ S
Sbjct: 161 EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLET---INRIKLYSES 217
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ +
Sbjct: 218 LARYGKS--PYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-S 272
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK--P 378
            G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K   
Sbjct: 273 EGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNTN 314
Query: 379 DLSNFLVIFP 388
           D ++  +I P
Sbjct: 315 DANSCQIIIP 324

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 171/375 (45%), Gaps = 48/375 (12%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 10  TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 64
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 65  ----NPISKEERESKFGK------DRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 113
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 114 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 172
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 173 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 225
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 226 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 283
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 284 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 324
Query: 381 SN---FLVIFPPRSL 392
           SN     +I P   L
Sbjct: 325 SNADSLQIIIPQSQL 339

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 171/375 (45%), Gaps = 48/375 (12%)
Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L           
Sbjct: 8   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQ----- 62
Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
               +P+  +   S +         R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 63  ----NPISKEERESKFGK------DRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 111
Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    + 
Sbjct: 112 QVSGSYVF-KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLD 170
Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
           + +  +D    E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 171 LDKNTMD----EVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQS 223
Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+  +    +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 224 VARYGKS--PYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK 281
Query: 321 SGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380
            G    +  ++ DP++  P    S+ Q                +V R ICI    + P+ 
Sbjct: 282 LGT-FKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPV-PNT 322
Query: 381 SN---FLVIFPPRSL 392
           SN     +I P   L
Sbjct: 323 SNADSLQIIIPQSQL 337

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 150/321 (46%), Gaps = 36/321 (11%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASS 345
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+    + +  
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRV 444
Query: 346 HQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404
             +               +++R + IT  S LK D    + I    +  P    ++RV++
Sbjct: 445 QYR---------------QISRAVLITDGSVLKTDADQQVSILTVPAEEPGSF-AVRVIE 488
Query: 405 LGGNLAVCPLG--MVSLDLLS 423
           L  +   C  G  +V L  +S
Sbjct: 489 LCSSTMTCMKGTYLVHLTCMS 509

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 17/231 (7%)
Query: 106 RNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIF 165
           R FN+D+   ++L+     +DL++KS  S Y EFK+I        +  +  VP SRA +F
Sbjct: 222 RRFNIDLVS-KLLYSRGLLIDLLIKSNVSRYAEFKNITRILAF-REGTVEQVPCSRADVF 279
Query: 166 KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS 225
             K L ++EK  LM+F      +    E   +  R  E    + F+E+L   KL   ++ 
Sbjct: 280 NSKQLTMVEKRMLMKFLTFCVEY----EEHPDEYRAYE---GTTFSEYLKTQKLTPNLQY 332
Query: 226 IVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285
            VL++IAM       SE    T DG+     +   +GR+ N     ++P+YGQGELPQ F
Sbjct: 333 FVLHSIAM------TSETTSCTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCF 384
Query: 286 CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336
           CR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   +++ S+
Sbjct: 385 CRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY 435

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  104 bits (260), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 163/361 (45%), Gaps = 61/361 (16%)
Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL   +LT+  N+   P   
Sbjct: 21  YDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASL---NLTNLYNTFK-PKEN 76
Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
            P         S Y         R++N+D+  P+ +    + V ++ K+  ++YLE+  +
Sbjct: 77  IP---------SKYGEN------RHWNVDLI-PKFILVGGNLVKILKKTRVTNYLEWLVV 120
Query: 143 DATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDES 194
           + +++        L ++  +  VP +         L LMEKN+   F++ V         
Sbjct: 121 EGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVS-------E 173
Query: 195 EENNVRISEEDLDSPFA----EFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250
            + N R + ++LD P+     E      L       + +A+A+   D  + +    T   
Sbjct: 174 WDANKRNTWDNLD-PYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLT--- 229
Query: 251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN 310
           + R+ LY  SI  F  +    IYP+YG G +P+ F R  A+ G  ++L   V+  + D +
Sbjct: 230 LERIKLYMQSISAFGKS--PFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDD 287
Query: 311 SGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC 370
           +    G++ + G+     K++ DPS+ +          L+   +        G+V R IC
Sbjct: 288 N-KVCGIKSSDGEIAYCDKVICDPSYVM---------HLKNKIKKI------GQVIRCIC 331
Query: 371 I 371
           I
Sbjct: 332 I 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	5e-77
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	7e-72
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	4e-65
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	8e-65
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	2e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  245 bits (626), Expect = 5e-77
 Identities = 88/399 (22%), Positives = 167/399 (41%), Gaps = 48/399 (12%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
            T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +   
Sbjct: 9   DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 68

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L       ++++ +  + Y++F
Sbjct: 69  KEERESKFG---------------KDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDF 112

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K +  +++     K+  VP +         +G+ EK ++ +F + +  +   D S    +
Sbjct: 113 KQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGL 171

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
            + +        E   K  L +  K  + +A+A+   D  + +     R    R+ LY  
Sbjct: 172 DLDKN----TMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQ---PARPSFERILLYCQ 224

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+ 
Sbjct: 225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK- 281

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP- 378
                  +  ++ DP++  P    S+ Q                +V R ICI    +   
Sbjct: 282 TKLGTFKAPLVIADPTY-FPEKCKSTGQ----------------RVIRAICILNHPVPNT 324

Query: 379 -DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
            +  +  +I P   L  +    I V  +     VC  G 
Sbjct: 325 SNADSLQIIIPQSQLGRKS--DIYVAIVSDAHNVCSKGH 361

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  232 bits (593), Expect = 7e-72
 Identities = 86/412 (20%), Positives = 165/412 (40%), Gaps = 57/412 (13%)

Query: 14  PYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFL 73
                +   +D+I++GTGL E ++S   S  GK +L LD NP+YG   +SL++ +L +  
Sbjct: 12  ENLYFQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTF 71

Query: 74  NSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGA 133
                  S                        R++N+D+  P+ +    + V ++ K+  
Sbjct: 72  KPKENIPSKYG-------------------ENRHWNVDL-IPKFILVGGNLVKILKKTRV 111

Query: 134 SHYLEFKSIDATFM--------LDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLV 185
           ++YLE+  ++ +++        L ++  +  VP +         L LMEKN+   F++ V
Sbjct: 112 TNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYV 171

Query: 186 QGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVL 245
               +   +  +N+    +       E      L       + +A+A+   D  + +   
Sbjct: 172 SEWDANKRNTWDNL----DPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQ--- 224

Query: 246 KTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISL 305
                + R+ LY  SI  F       IYP+YG G +P+ F R  A+ G  ++L   V+  
Sbjct: 225 PAYLTLERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDF 282

Query: 306 LTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKV 365
           + D +     G++ + G+     K++ DPS+ +                  +     G+V
Sbjct: 283 VFDDD-NKVCGIKSSDGEIAYCDKVICDPSYVMHLK---------------NKIKKIGQV 326

Query: 366 ARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
            R ICI  + +      ++  +I P   L  +    I +  +     V   G
Sbjct: 327 IRCICILSNPIPETNQTNSCQIIIPQNQLNRKS--DIYINLVSFQHGVTLKG 376

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  214 bits (545), Expect = 4e-65
 Identities = 96/398 (24%), Positives = 168/398 (42%), Gaps = 54/398 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
              +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +        
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 80  SSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEF 139
                                     R++N+D+  P+ L      V ++L +  + YL+F
Sbjct: 64  PPETM------------------GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDF 104

Query: 140 KSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNV 199
           K ++ +F+     K+  VP +         +G+ EK +  +F   V      D       
Sbjct: 105 KVVEGSFVY-KGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTF--- 160

Query: 200 RISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS 259
               +  ++   +   K  L   +     +A+A+   D  + +      + INR+ LY+ 
Sbjct: 161 -EGVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQ---PCLETINRIKLYSE 216

Query: 260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319
           S+ R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +  +G   GV+ 
Sbjct: 217 SLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK- 271

Query: 320 ASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK-- 377
           + G+     +L+ DPS+ VP  +  +                 G+V R ICI    +K  
Sbjct: 272 SEGEVARCKQLICDPSY-VPDRVRKA-----------------GQVIRIICILSHPIKNT 313

Query: 378 PDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415
            D ++  +I P   +  +    I V  +     V   G
Sbjct: 314 NDANSCQIIIPQNQVNRKS--DIYVCMISYAHNVAAQG 349

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  218 bits (556), Expect = 8e-65
 Identities = 90/389 (23%), Positives = 151/389 (38%), Gaps = 46/389 (11%)

Query: 31  GLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSD 90
            +P          S   V   +      +  +  S  + +  +      +        + 
Sbjct: 155 EIPAEQSQCPGPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITY 214

Query: 91  VEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDA 150
            +I            R FN+D+   ++L+     +DL++KS  S Y EFK+I        
Sbjct: 215 SQIIK--------EGRRFNIDLV-SKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFR- 264

Query: 151 DAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF 210
           +  +  VP SRA +F  K L ++EK  LM+F      +    +              + F
Sbjct: 265 EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYR-------AYEGTTF 317

Query: 211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGA 270
           +E+L   KL   ++  VL++IAM             T DG+     +   +GR+ N    
Sbjct: 318 SEYLKTQKLTPNLQYFVLHSIAMTSETTS------CTVDGLKATKKFLQCLGRYGNT--P 369

Query: 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL 330
            ++P+YGQGELPQ FCR  AV G +Y LR  V  L+ D+ S   K V    GQ I+S   
Sbjct: 370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHF 429

Query: 331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP---DLSNFLVIF 387
           +++ S+    + +                    +++R + IT  S+     D    ++  
Sbjct: 430 IIEDSYLSENTCSRV---------------QYRQISRAVLITDGSVLRTDADQQVSILTV 474

Query: 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
           P        V   RV++L  +   C  G 
Sbjct: 475 PAEEPGSFAV---RVIELCSSTMTCMKGT 500

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score = 77.7 bits (190), Expect = 2e-15
 Identities = 50/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 20  PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
           P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 6   PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 65

Query: 80  SSVCPD---------------PLYS------DVEISNYASRLLSQHPRNFNLDVSGPRVL 118
           + V  +               PL S       VE+  YAS+ L +              +
Sbjct: 66  NDVVTENSMWQEQILENEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASV 125

Query: 119 FCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178
             A  A        +      + +      +  A+    P   ++   + +    +K   
Sbjct: 126 TSAQSAEAAEAAETSCLPTAVEPLSMG-SCEIPAEQSQCPGPESSPEVNDAEATGKKEN- 183

Query: 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLP 220
                      S  E    NV   +++ ++P    +T  ++ 
Sbjct: 184 -------SDAKSSTEEPSENVPKVQDNTETPKKNRITYSQII 218

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 8e-09
 Identities = 69/426 (16%), Positives = 127/426 (29%), Gaps = 119/426 (27%)

Query: 44  SGKSVLHLD-----------PNPFY----GSHFSSLSI----ADLTHFL--NSHSTPSSV 82
           SGK+ + LD               +     +  S  ++      L + +  N  S     
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNL----DVSGPRVL--FCADHAVDLMLKSGASHY 136
               L     I     RLL   P    L    +V   +    F  + +  ++L +     
Sbjct: 221 SNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--NLSCKILLTT----- 272

Query: 137 LEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKL----VQGH---L 189
             FK +   F+  A     S+      +  D+   L+ K    R   L    +  +   L
Sbjct: 273 -RFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 190 SLDESEENNVRISEEDLDSP----FAEFLTKMKLPHKIKSIV----------LY-AIAMA 234
           S+         I+E   D        + +   KL   I+S +          ++  +++ 
Sbjct: 331 SI---------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 235 DYDQEVSEYVLK----------TRDGINRLALYNSSIGRFQNALGALIYPIY-------- 276
                +   +L               +N+L  Y S + +        I  IY        
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLE 440

Query: 277 GQGELPQAF--CRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA----SGQDILSHKL 330
            +  L ++               L  P +    DQ   S+ G  L       +  L   +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 331 VLDPSF------------TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378
            LD  F               GS+ ++ QQL + ++ + + DN  K  R +         
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPY-ICDNDPKYERLVN-------- 546

Query: 379 DLSNFL 384
            + +FL
Sbjct: 547 AILDFL 552

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 53/381 (13%), Positives = 106/381 (27%), Gaps = 104/381 (27%)

Query: 51  LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEI-SNY-ASR--------- 99
           L  N  Y    S +        + +         D LY+D ++ + Y  SR         
Sbjct: 87  LRIN--YKFLMSPIKTEQRQPSMMTRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 100 -LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVP 158
            LL   P   N+ + G             +L SG       K+  A  +  +    C + 
Sbjct: 143 ALLELRP-AKNVLIDG-------------VLGSG-------KTWVALDVCLSYKVQCKMD 181

Query: 159 DSRAAIF------KDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE 212
                IF       +    ++E  Q +  +++     S  +   N +++    + +    
Sbjct: 182 F---KIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSN-IKLRIHSIQAELRR 236

Query: 213 FLTKMKLPHKIKSIVLYAIAMAD--YDQEVSEY-------VLKTRDGINRLALYNSSIGR 263
            L      + +  +VL          + +           +L TR            +  
Sbjct: 237 LLKSKPYENCL--LVL------LNVQNAKAWNAFNLSCKILLTTRF---------KQV-- 277

Query: 264 FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ 323
             + L A                        L  L      L                 +
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PRE 321

Query: 324 DILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--S 381
            + ++   L         +A S +    ++  +   +   K+   I  + + L+P     
Sbjct: 322 VLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRK 373

Query: 382 NF--LVIFPPRSLFPEQVTSI 400
            F  L +FPP +  P  + S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSL 394

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.95
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.95
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.94
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.93
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.92
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.92
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.92
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.91
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.91
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.91
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.91
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.88
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.86
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.83
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.83
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.82
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.81
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.8
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.72
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.7
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.68
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.67
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.66
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.66
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.62
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.62
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.61
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.6
3dme_A	369	Conserved exported protein; structural genomics, P	99.36
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.34
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.3
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.25
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.24
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.2
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.2
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.2
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.18
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.17
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.15
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.14
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.14
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.13
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.09
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.06
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.02
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.97
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.94
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.79
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.72
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.72
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.7
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.69
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.67
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.66
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.65
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.64
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.62
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.61
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.59
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.59
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.59
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.57
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.57
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.56
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.55
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.54
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.53
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.52
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.51
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.51
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.51
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.5
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.49
4dna_A	463	Probable glutathione reductase; structural genomic	98.48
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.48
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.48
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.48
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.47
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.45
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.45
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.45
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.45
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.44
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.44
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.44
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.44
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.43
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.43
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.42
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.42
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.41
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.4
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.4
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.39
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.39
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.39
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.38
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.37
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.37
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.37
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.37
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.36
3atr_A	453	Conserved archaeal protein; saturating double bond	98.36
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.36
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.36
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.36
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.36
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.36
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.35
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.35
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.34
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.34
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.34
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.34
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.34
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.33
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.33
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.33
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.33
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.33
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.33
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.32
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.32
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.32
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.32
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.32
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.31
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.31
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.31
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.31
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.3
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.3
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.27
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.26
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.26
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.26
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.25
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.25
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.25
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.25
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.24
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.24
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.23
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.23
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.23
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.23
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.22
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.21
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.21
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.21
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.2
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.2
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.18
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.18
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.17
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.17
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.17
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.16
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.15
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.14
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.14
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.13
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.13
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.11
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.1
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.1
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.09
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.06
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.05
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.05
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.05
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.04
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.04
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.02
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.99
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.99
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.98
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.98
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.97
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.97
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.95
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.92
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.88
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.87
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.85
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.84
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.83
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.82
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.81
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.81
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.77
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.77
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.77
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.76
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.73
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.68
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.67
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.64
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.64
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.52
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.38
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.35
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.33
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.29
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.12
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.32
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.3
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.28
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.18
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.1
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.0
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.93
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.85
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.84
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.83
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.77
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	95.7
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.7
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.69
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	95.67
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.63
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.5
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	95.49
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.47
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.46
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.44
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.42
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.35
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.19
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.07
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.01
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.0
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.98
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	94.97
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.96
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	94.96
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.9
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	94.9
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	94.88
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.87
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.86
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.85
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	94.84
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.81
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	94.8
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.78
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.78
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.73
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.72
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.71
2cul_A	232	Glucose-inhibited division protein A-related PROT	94.68
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.63
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.63
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.58
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	94.58
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.55
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.54
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.53
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.51
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	94.49
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.46
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.44
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.36
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.35
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	94.34
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.34
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.34
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.3
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	94.29
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.26
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.26
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.22
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	94.22
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	94.18
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.15
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	94.14
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	94.14
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.13
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.1
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.08
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.07
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.07
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.06
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	94.06
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.05
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.02
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.98
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.97
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.94
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.91
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	93.89
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	93.88
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.87
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.81
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	93.76
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	93.76
3atr_A	453	Conserved archaeal protein; saturating double bond	93.76
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	93.76
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.72
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.66
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.64
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.62
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.61
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	93.58
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	93.53
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	93.53
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	93.47
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	93.43
1fec_A	490	Trypanothione reductase; redox-active center, oxid	93.42
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	93.42
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	93.4
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.39
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	93.39
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	93.38
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.36
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	93.23
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.23
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.2
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.2
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	93.19
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.19
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.18
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.14
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.11
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.11
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	93.09
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.08
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.08
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.04
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	93.02
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.01
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	92.97
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	92.9
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.9
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	92.9
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.88
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	92.87
2e1m_B	130	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.84
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.82
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	92.82
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	92.78
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.77
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	92.75
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.75
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.72
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.72
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	92.69
4dna_A	463	Probable glutathione reductase; structural genomic	92.69
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	92.63
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	92.56
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	92.55
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.54
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	92.53
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.53
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.53
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.47
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.45
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.42
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.4
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.4
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	92.37
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.32
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	92.29
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.28
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	92.26
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	92.26
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.22
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.2
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	92.18
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.17
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.17
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	92.17
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	92.14
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.13
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	92.13
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.11
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	92.09
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.07
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.05
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	92.05
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.05
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	91.97
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.96
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	91.89
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	91.88
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.87
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	91.8
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.8
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.8
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	91.77
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	91.71
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	91.63
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	91.59
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.58
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	91.48
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	91.45
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	91.42
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	91.39
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.36
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	91.3
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.19
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	91.11
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.05
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	91.0
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.0
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	90.98
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	90.82
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.79
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.78
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.75
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.75
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	90.73
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	90.71
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	90.67
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	90.65
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	90.62
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	90.56
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	90.56
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	90.55
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	90.5
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.5
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	90.31
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	90.22
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.21
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	90.2
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	90.2
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	90.1
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.05
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	90.05
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	90.05
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.03
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	90.02
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.02
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.01
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	89.96
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	89.94
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.93
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.91
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	89.91
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	89.91
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	89.88
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	89.87
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	89.83
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.73
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	89.65
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	89.63
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.61
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	89.52
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	89.51
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	89.45
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	89.39
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	89.37
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	89.37
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	89.35
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	89.25
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	89.16
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.15
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	89.12
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	89.12
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	89.06
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	89.05
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	89.0
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	88.99
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	88.96
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	88.93
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	88.79
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	88.75
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	88.68
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	88.56
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	88.5
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	88.5
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	88.42
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.4
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	88.36
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	88.34
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	88.19
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	88.03
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	87.92
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	87.89
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	87.88
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	87.85
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	87.81
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	87.76
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	87.76
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	87.61
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	87.6
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	87.5
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	87.46
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.38
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	87.23
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	87.3
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	87.26

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.5e-52  Score=412.20  Aligned_cols=361  Identities=23%  Similarity=0.421  Sum_probs=292.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      ++++|||||||||++|+++|+.|+++|++|+|+||++++||++++++.+++..+... +.+.                 .
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~-g~~~-----------------~   78 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKP-KENI-----------------P   78 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCT-TSCC-----------------C
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhccc-CCCc-----------------c
Confidence            456799999999999999999999999999999999999999999998776555432 2110                 0


Q ss_pred             ccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeec--------cCCceeecCCChhhhhccCCC
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLD--------ADAKLCSVPDSRAAIFKDKSL  170 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~--------~~g~~~~~p~~~~~~~~~~~l  170 (431)
                      ..+ ...++|++|+ +|+++++.+.++++|.++++.+|++|+.+++.|++.        ++|+.+++|.++.++|+++.+
T Consensus        79 ~~~-g~~R~y~iDL-~P~~l~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lL  156 (475)
T 3p1w_A           79 SKY-GENRHWNVDL-IPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLL  156 (475)
T ss_dssp             GGG-CCGGGCCEES-SCCBEETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTS
T ss_pred             ccc-ccccceEEee-cCeEeecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCC
Confidence            112 3568999999 599999999999999999999999999999998763        256789999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhH
Q 014049          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG  250 (431)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~  250 (431)
                      ++.+|+++++|+..+..+.+..+....    ..+....|+.+|++++++++.+++++.+++++.... +.  ...++..+
T Consensus       157 s~~eK~~l~kFL~~l~~~~~~~~~~~~----~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~-~~--~~~~a~~~  229 (475)
T 3p1w_A          157 SLMEKNRCKNFYQYVSEWDANKRNTWD----NLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLND-DY--LKQPAYLT  229 (475)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTCGGGST----TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhccchhhh----cccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCC-Cc--ccCCHHHH
Confidence            999999999999998776432211000    012346899999999999999999887776664322 11  12467778


Q ss_pred             HHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEE
Q 014049          251 INRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (431)
Q Consensus       251 ~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~V  330 (431)
                      +.++..|+.++++||.  ++++||+||+++|+++|++.++++||+|+++++|++|..+ ++|++++|++.+|++++||+|
T Consensus       230 l~ri~~y~~Sl~~yg~--s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d-~~g~v~gV~~~~G~~i~Ad~V  306 (475)
T 3p1w_A          230 LERIKLYMQSISAFGK--SPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFD-DDNKVCGIKSSDGEIAYCDKV  306 (475)
T ss_dssp             HHHHHHHHHHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEE
T ss_pred             HHHHHHHHHHHhhcCC--CceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEe-cCCeEEEEEECCCcEEECCEE
Confidence            8889999988888874  3489999999999999999999999999999999999983 278899999999999999999


Q ss_pred             EECCCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCC
Q 014049          331 VLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGN  408 (431)
Q Consensus       331 I~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~  408 (431)
                      |+++++.. .        +|+.      ....+.++|+++|+++|++.  +..+.+++||+.+++.  ++.||+++.|++
T Consensus       307 I~a~~~~~-~--------~p~~------~~~~~~v~R~i~I~~~pi~~~~~~~~~~i~~P~~~~~~--~~~iy~~~~s~~  369 (475)
T 3p1w_A          307 ICDPSYVM-H--------LKNK------IKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNR--KSDIYINLVSFQ  369 (475)
T ss_dssp             EECGGGCT-T--------STTS------EEEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGGTS--SSCEEEEEEEGG
T ss_pred             EECCCccc-c--------Cccc------ccccceEEEEEEEEeccCcccCCCceEEEEeCCcccCC--CCCEEEEEECCC
Confidence            99887641 0        1110      01246899999999999865  3467899999987765  678999999999


Q ss_pred             CccCCCCcEEEEEEcCCC
Q 014049          409 LAVCPLGMVSLDLLSPLP  426 (431)
Q Consensus       409 ~~~aP~G~~~~~i~~~~p  426 (431)
                      +++||+|++++|++|.+.
T Consensus       370 ~~~cp~G~~i~~~st~~e  387 (475)
T 3p1w_A          370 HGVTLKGKYIAIVSATVE  387 (475)
T ss_dssp             GTSSCTTCEEEEEEEECC
T ss_pred             cCcCCCCcEEEEEEeecC
Confidence            999999999999999773

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=1.1e-49  Score=406.40  Aligned_cols=369  Identities=31%  Similarity=0.521  Sum_probs=289.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCC-------C-----------
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSS-------V-----------   82 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~-------~-----------   82 (431)
                      .+|||+|||+|+.|.+.|+.|++.|++|+|+|+|++|||.+.++.+.++..|+........       +           
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEAI   86 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEEE
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchhhc
Confidence            4799999999999999999999999999999999999999999999999999876542100       0           


Q ss_pred             ---CCCCcccccccccc---------------------------------------------------------------
Q 014049           83 ---CPDPLYSDVEISNY---------------------------------------------------------------   96 (431)
Q Consensus        83 ---~~~~~~~~~~~~~~---------------------------------------------------------------   96 (431)
                         ......++.++.++                                                               
T Consensus        87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (650)
T 1vg0_A           87 PLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPGP  166 (650)
T ss_dssp             EBCSSCCCEEEEEEEECSCC------------------------------------------------------------
T ss_pred             cccccccccccceeEeecccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               00000000000000                                                               


Q ss_pred             ---------------------------------------cc--c-----cccCCCCceeeecCCCeEEeeCchHHHHHHh
Q 014049           97 ---------------------------------------AS--R-----LLSQHPRNFNLDVSGPRVLFCADHAVDLMLK  130 (431)
Q Consensus        97 ---------------------------------------~~--~-----~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~  130 (431)
                                                             .+  .     .+.+..|+|+||+ ||+++++++.++++|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL-~PklL~~~g~lv~LL~~  245 (650)
T 1vg0_A          167 ESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL-VSKLLYSRGLLIDLLIK  245 (650)
T ss_dssp             --------------------------------------------CCCHHHHHHTGGGCCEES-SCCCEESSSHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEee-CCeeeeCCcHHHHHHHH
Confidence                                                   00  0     0112578999999 59999999999999999


Q ss_pred             cCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcH
Q 014049          131 SGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF  210 (431)
Q Consensus       131 ~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  210 (431)
                      +|+.+|++|+.++..|++. +|++.++|.++.++|+++.+++.+|+.+++|+..+..+.. .+      ..+..+...|+
T Consensus       246 sgV~~yLEFk~v~~~y~~~-~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p------~~~~~~d~~S~  317 (650)
T 1vg0_A          246 SNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HP------DEYRAYEGTTF  317 (650)
T ss_dssp             HTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CH------HHHHTTTTSBH
T ss_pred             cCCcceeeEEEccceEEec-CCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-Ch------HHHhhhccCCH
Confidence            9999999999999988874 8889999999999999999999999999999998876432 11      11234567899


Q ss_pred             HHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHH
Q 014049          211 AEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAA  290 (431)
Q Consensus       211 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~  290 (431)
                      .+|++++++++.++.++.+.+++.....      .+...++.++..|+.++++||.  ++++||+||+++|+++|+|+++
T Consensus       318 ~d~L~~~~ls~~L~~~L~~~lal~~~~~------~pa~~~l~~i~~~l~sl~~yg~--sg~~yp~GG~g~L~qaL~r~~~  389 (650)
T 1vg0_A          318 SEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGN--TPFLFPLYGQGELPQCFCRMCA  389 (650)
T ss_dssp             HHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSS--SSEEEETTCTTHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhccCCCC------CchhHHHHHHHHHHHHHHhhcc--CceEEeCCchhHHHHHHHHHHH
Confidence            9999999999999999887665543321      2345566677888888888875  3489999999999999999999


Q ss_pred             hcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEE
Q 014049          291 VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGIC  370 (431)
Q Consensus       291 ~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  370 (431)
                      ++||+|+++++|++|.++.++|+++||++.+|++++||+||++|.++ +....              .+...++++|+++
T Consensus       390 ~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~l-p~~~~--------------~~~~~~~v~R~i~  454 (650)
T 1vg0_A          390 VFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL-SENTC--------------SRVQYRQISRAVL  454 (650)
T ss_dssp             HTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGB-CTTTT--------------TTCCCEEEEEEEE
T ss_pred             HcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhc-CHhHh--------------ccccccceEEEEE
Confidence            99999999999999999821188999998889999999999987765 32110              1113467999999


Q ss_pred             EeCCCCCCC---CCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEcC
Q 014049          371 ITRSSLKPD---LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSP  424 (431)
Q Consensus       371 i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~~  424 (431)
                      ++++++.+.   ....++++|+.+ +.  ++.||++++|+++++||+|++++|+++.
T Consensus       455 i~~~pi~~~~~~~~~~~iiiP~~~-g~--~~~V~i~~~Ss~~~~cP~G~~Vv~lst~  508 (650)
T 1vg0_A          455 ITDGSVLRTDADQQVSILTVPAEE-PG--SFAVRVIELCSSTMTCMKGTYLVHLTCM  508 (650)
T ss_dssp             EESSCSSCCSCCCCCEEEEECCSS-TT--SCCEEEEEECGGGTSSCTTCEEEEEEEE
T ss_pred             EecCCCCCcCCCcceEEEEccCcc-CC--CCCEEEEEeCCCCCCCCCCCEEEEEEee
Confidence            999987643   245777888765 32  7899999999999999999999999886

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=7.8e-43  Score=350.15  Aligned_cols=363  Identities=24%  Similarity=0.467  Sum_probs=268.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      +.++||||||||++||+||++|+++|++|+||||++++||+++|++.++...+. +.+...           ...  ...
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~-d~~~~~-----------~~~--~~~   74 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKF-KQNPIS-----------KEE--RES   74 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHH-CSSCCC-----------HHH--HHH
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhcee-ccCCcc-----------ccC--cch
Confidence            356999999999999999999999999999999999999999999987632221 111000           000  000


Q ss_pred             cccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (431)
                      .+ .....|.+++ +|+++++.+.+.++|.++|+.+|++|..++..|.+. +|+.+++|.+..+.+....++..+|+.++
T Consensus        75 ~~-~~g~~~~~~l-~P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~~  151 (453)
T 2bcg_G           75 KF-GKDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRMK  151 (453)
T ss_dssp             HH-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHHH
T ss_pred             hc-ccccceeecc-ccceeecCcHHHHHHHhcCCccceEEEEccceeEEe-CCeEEECCCChHHHHhhhccchhhHHHHH
Confidence            00 1224677899 599999999999999999999999999998888765 88999999986677777777888999999


Q ss_pred             HHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHh
Q 014049          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNS  259 (431)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  259 (431)
                      +|+..+.......+..  . . ..++...|+.+|+++++.++.+++++.+.+.+.... +.  ...+...++.++..|+.
T Consensus       152 ~~~~~~~~~~~~~p~~--~-~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~-~~--~~~p~~~~~~~~~~~~~  224 (453)
T 2bcg_G          152 KFLEWISSYKEDDLST--H-Q-GLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTND-DY--LQQPARPSFERILLYCQ  224 (453)
T ss_dssp             HHHHHHHHCBTTBGGG--S-T-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSS-GG--GGSBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCchh--h-h-ccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCc-cc--cCCchHHHHHHHHHHHH
Confidence            9998887654321110  0 0 012457899999999999999999887654432110 00  00134445555666777


Q ss_pred             hhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCCC
Q 014049          260 SIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (431)
Q Consensus       260 s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~  339 (431)
                      +++.++.  +++.||+||+++|+++|++.++++|++|+++++|++|..+.+++++++|++ +|++++||+||+++.....
T Consensus       225 s~~~~~~--~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~  301 (453)
T 2bcg_G          225 SVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE  301 (453)
T ss_dssp             HHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred             HHHhhcC--CceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence            6666653  347799999999999999999999999999999999987521467788886 6889999999987543211


Q ss_pred             CCCCCchhhhhhhhhhhcccCCCC-eEEEEEEEeCCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049          340 GSLASSHQQLQESFQAFSLSDNKG-KVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (431)
Q Consensus       340 ~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~  416 (431)
                      +        +.          ... ...+++++++++++.  ...++.+++|...++.  +|++|+++++.++++||+|+
T Consensus       302 ~--------l~----------~~~~~~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~--~~~~~v~~~s~~d~~aP~G~  361 (453)
T 2bcg_G          302 K--------CK----------STGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGR--KSDIYVAIVSDAHNVCSKGH  361 (453)
T ss_dssp             G--------EE----------EEEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTC
T ss_pred             h--------hc----------ccCCcceeEEEEEccccCCCCCCccEEEEeCccccCC--CCCEEEEEeCCCCCCCCCCc
Confidence            1        10          122 466777788888753  3457888999776665  78999999996448999999


Q ss_pred             EEEEEEcCCCCCC
Q 014049          417 VSLDLLSPLPHQM  429 (431)
Q Consensus       417 ~~~~i~~~~p~~~  429 (431)
                      +++|+++++|+..
T Consensus       362 ~~~~v~~~~~~~~  374 (453)
T 2bcg_G          362 YLAIISTIIETDK  374 (453)
T ss_dssp             EEEEEEEECCSSC
T ss_pred             EEEEEEEecCCCC
Confidence            9999999998753

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=6.4e-41  Score=334.22  Aligned_cols=357  Identities=26%  Similarity=0.485  Sum_probs=268.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC-hhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      +.++||||||||++||+||++|+++|++|+|+|+++++||+++|++ +..... .++.+..       .+..        
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~-~~~~~~~-------~~~~--------   67 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYK-RFQLLEG-------PPET--------   67 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHH-HTTCTTC-------CCGG--------
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHh-hccCCCC-------ChhH--------
Confidence            4569999999999999999999999999999999999999999998 432110 1111000       0000        


Q ss_pred             ccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                        + .....|.+|+ ||++++..+.+.+++.++|+.+|++|...++.|.+. +|+.+.+|.+..+.+.....+..+++.+
T Consensus        68 --~-~~g~~~~~d~-gP~~l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~l~~~~~~~~~  142 (433)
T 1d5t_A           68 --M-GRGRDWNVDL-IPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYK-GGKIYKVPSTETEALASNLMGMFEKRRF  142 (433)
T ss_dssp             --G-CCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGGCCEEECCEEEEEE-TTEEEECCCSHHHHHHCSSSCHHHHHHH
T ss_pred             --h-cccCceEEcc-CcceeeccchHHHHHHHcCCccceEEEEeCceEEee-CCEEEECCCCHHHHhhCcccChhhHHHH
Confidence              0 1225788999 699999888999999999999999999988878764 8888999998667777777777799999


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      ++|++.+..+....+...   + ..++...|+.+|+++++.++.+++++.+.+++... .++  ...++..++.++..|.
T Consensus       143 ~~~~~~~~~~~~~~p~~~---~-~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~-~~~--~~~p~~~~~~~~~~~~  215 (433)
T 1d5t_A          143 RKFLVFVANFDENDPKTF---E-GVDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRT-DDY--LDQPCLETINRIKLYS  215 (433)
T ss_dssp             HHHHHHHHHCCTTCGGGG---T-TCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSS-SGG--GGSBSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCchhc---c-ccccccCCHHHHHHHcCCCHHHHHHHHHHHHhccC-CCc--cCCCHHHHHHHHHHHH
Confidence            999988776432211110   1 11346789999999999999999987665433211 111  1234555666677777


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCC
Q 014049          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV  338 (431)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~  338 (431)
                      .+++++|.  ++++||+||+++|+++|++.++++|++|+++++|++|..+  ++++++|+ .+|++++||+||++.... 
T Consensus       216 ~s~~~~g~--~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~--~~~v~~v~-~~g~~~~ad~VV~a~~~~-  289 (433)
T 1d5t_A          216 ESLARYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME--NGKVVGVK-SEGEVARCKQLICDPSYV-  289 (433)
T ss_dssp             HSCCSSSC--CSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEE--TTEEEEEE-ETTEEEECSEEEECGGGC-
T ss_pred             HHHHhcCC--CcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEe--CCEEEEEE-ECCeEEECCEEEECCCCC-
Confidence            77666663  3478999999999999999999999999999999999987  78888887 488899999999875432 


Q ss_pred             CCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCC--CCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCc
Q 014049          339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM  416 (431)
Q Consensus       339 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~  416 (431)
                      +..       ++       +   .....+++++++++++..  ..++++++|...++.  +|++|+++++.|+++||+|+
T Consensus       290 ~~~-------~~-------~---~~~~~~~~~il~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~v~~~s~d~~~aP~G~  350 (433)
T 1d5t_A          290 PDR-------VR-------K---AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNR--KSDIYVCMISYAHNVAAQGK  350 (433)
T ss_dssp             GGG-------EE-------E---EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTC
T ss_pred             ccc-------cc-------c---cCcceeEEEEEcCcccccCCCceEEEEeCccccCC--CCCEEEEEECCCCcccCCCC
Confidence            110       10       0   113455677788887532  368899998776665  79999999998889999999


Q ss_pred             EEEEEEcCCCCCC
Q 014049          417 VSLDLLSPLPHQM  429 (431)
Q Consensus       417 ~~~~i~~~~p~~~  429 (431)
                      +++++++++|+..
T Consensus       351 ~~~~~~~~~p~~~  363 (433)
T 1d5t_A          351 YIAIASTTVETTD  363 (433)
T ss_dssp             EEEEEEEECCSSC
T ss_pred             EEEEEEEecCCCC
Confidence            9999999998753

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=7.3e-38  Score=318.42  Aligned_cols=346  Identities=15%  Similarity=0.153  Sum_probs=216.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      .+|||||||++||+||++|+++|++|+||||++++||+++|++.+                                   
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~-----------------------------------   46 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQ-----------------------------------   46 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEET-----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeC-----------------------------------
Confidence            589999999999999999999999999999999999999998653                                   


Q ss_pred             CCCCceeeecCCCeEEeeCchHHHHHHhcC--cccccccccccceee-eccCCceeecCCChhhhhcc-CCCChHHHHHH
Q 014049          103 QHPRNFNLDVSGPRVLFCADHAVDLMLKSG--ASHYLEFKSIDATFM-LDADAKLCSVPDSRAAIFKD-KSLGLMEKNQL  178 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~--~~~~~~f~~~~~~~~-~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l  178 (431)
                          +|.+|. ||+++..++.+.+++...+  +.+++++.++++.|. ...+|+.+.++.+....... ..+++.+...+
T Consensus        47 ----G~~~D~-G~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~  121 (501)
T 4dgk_A           47 ----GFTFDA-GPTVITDPSAIEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGY  121 (501)
T ss_dssp             ----TEEEEC-SCCCBSCTHHHHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHH
T ss_pred             ----CEEEec-CceeecCchhHHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchh
Confidence                467888 6888776666666666655  567888888888773 33578888888776443321 23457777888


Q ss_pred             HHHHHHHHcccCCCcc---c---ccccc---ccccc----cCCcHHHHHHhcCCChhHHHHHHH-HHhcCCCCcchhhhh
Q 014049          179 MRFFKLVQGHLSLDES---E---ENNVR---ISEED----LDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYV  244 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~---~---~~~~~---~~~~~----~~~s~~~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~  244 (431)
                      .+|++.++........   .   ....+   .....    ...++.++++++..++.++.++.. +.........     
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~~-----  196 (501)
T 4dgk_A          122 RQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPFA-----  196 (501)
T ss_dssp             HHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC-------
T ss_pred             hhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcch-----
Confidence            8888776654322110   0   00000   00011    114677888888788888887653 2111111111     


Q ss_pred             hchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcE
Q 014049          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD  324 (431)
Q Consensus       245 ~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~  324 (431)
                      .+..   ..+..++.  ...|     .+||+||+++|+++|++.++++||+|++|++|++|.++  ++++++|+++||++
T Consensus       197 ~~~~---~~~~~~~~--~~~G-----~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~--~~~~~gV~~~~g~~  264 (501)
T 4dgk_A          197 TSSI---YTLIHALE--REWG-----VWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT--GNKIEAVHLEDGRR  264 (501)
T ss_dssp             CCCT---HHHHHHHH--SCCC-----EEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCE
T ss_pred             hhhh---hhhhhhhh--ccCC-----eEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee--CCeEEEEEecCCcE
Confidence            1111   11222221  1223     67999999999999999999999999999999999998  89999999999999


Q ss_pred             EEeCEEEEC--CCCCCCCCCCCchhhhhhhh-hhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCC--------
Q 014049          325 ILSHKLVLD--PSFTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLF--------  393 (431)
Q Consensus       325 i~Ad~VI~~--p~~~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------  393 (431)
                      +.||.||++  |..++..|+. .. +++... +.+.+........+..+.++.+.+ ...++.+++.+....        
T Consensus       265 ~~ad~VV~~a~~~~~~~~Ll~-~~-~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~-~l~~~~i~~~~~~~~~~~~~~~~  341 (501)
T 4dgk_A          265 FLTQAVASNADVVHTYRDLLS-QH-PAAVKQSNKLQTKRMSNSLFVLYFGLNHHHD-QLAHHTVCFGPRYRELIDEIFNH  341 (501)
T ss_dssp             EECSCEEECCC-----------------------------CCEEEEEEEEESSCCT-TSCSEEEEEECC-----------
T ss_pred             EEcCEEEECCCHHHHHHHhcc-cc-ccchhhhhhhhccccCCceeEEEecccCCcc-ccccceeccccchhhhccccccc
Confidence            999999975  4455555542 11 122211 112111112223333334576653 445677766543211        


Q ss_pred             --CCCCCeEEEEEec-CCCccCCCCcEEEEEEcCCCCC
Q 014049          394 --PEQVTSIRVLQLG-GNLAVCPLGMVSLDLLSPLPHQ  428 (431)
Q Consensus       394 --~~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~~p~~  428 (431)
                        -..++++|+++++ .|++.||+|+.++++++++|+.
T Consensus       342 ~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~~~~~~p~~  379 (501)
T 4dgk_A          342 DGLAEDFSLYLHAPCVTDSSLAPEGCGSYYVLAPVPHL  379 (501)
T ss_dssp             --CCCEEEEEEECGGGTCGGGSSTTCEEEEEEEEECCT
T ss_pred             cccccCCceecccCCCCCCCcCCCCCceEEEEEecCcc
Confidence              1237899999999 5999999999999999999875

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.95  E-value=3e-27  Score=234.90  Aligned_cols=317  Identities=12%  Similarity=0.090  Sum_probs=195.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      +||||||||++||+||++|+++|++|+||||++++||+++++..+                                   
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~-----------------------------------   45 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYK-----------------------------------   45 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEET-----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccC-----------------------------------
Confidence            389999999999999999999999999999999999999997643                                   


Q ss_pred             CCCCceeeecCCCeEEee---CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH
Q 014049          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (431)
                          +|.+|. ||+++..   ...+.+++.+.+..  .++...++...+..+|+..+++...      ..+++.++..+.
T Consensus        46 ----g~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~--~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~~~~~~~  112 (421)
T 3nrn_A           46 ----GFQLST-GALHMIPHGEDGPLAHLLRILGAK--VEIVNSNPKGKILWEGKIFHYRESW------KFLSVKEKAKAL  112 (421)
T ss_dssp             ----TEEEES-SSCSEETTTTSSHHHHHHHHHTCC--CCEEECSSSCEEEETTEEEEGGGGG------GGCC--------
T ss_pred             ----CEEEec-CCeEEEccCCChHHHHHHHHhCCc--ceEEECCCCeEEEECCEEEEcCCch------hhCCHhHHHHHH
Confidence                456677 5655432   23567777777764  3344433333222267777776432      234566666665


Q ss_pred             HHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCC-ChhHHHHHHHH-HhcCCCCcchhhhhhchhhHHHHHHHH
Q 014049          180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKL-PHKIKSIVLYA-IAMADYDQEVSEYVLKTRDGINRLALY  257 (431)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~-~~~l~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (431)
                      +++..+....             ....+.++.+|++++++ .+.++.++... .....  .++  .+++....+..+..+
T Consensus       113 ~~~~~~~~~~-------------~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~  175 (421)
T 3nrn_A          113 KLLAEIRMNK-------------LPKEEIPADEWIKEKIGENEFLLSVLESFAGWADS--VSL--SDLTALELAKEIRAA  175 (421)
T ss_dssp             CCHHHHHTTC-------------CCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHS--SCG--GGSBHHHHHHHHHHH
T ss_pred             HHHHHHHhcc-------------CCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcC--CCc--ccCCHHHHHHHHHHH
Confidence            5554433210             01224789999998744 44444443321 11111  111  234554444444333


Q ss_pred             HhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCC
Q 014049          258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSF  336 (431)
Q Consensus       258 ~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~  336 (431)
                      .    .++   + .++|+||+++|+++|++.+++.|++|+++++|++|..+  ++++  |. .+|++++||+||++ +..
T Consensus       176 ~----~~~---g-~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~v--V~-~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          176 L----RWG---G-PGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIE--EKKV--YT-RDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             H----HHC---S-CEEETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETT--TTEE--EE-TTCCEEECSEEEECSCHH
T ss_pred             h----hcC---C-cceecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEE--CCEE--EE-eCCcEEEeCEEEECCCHH
Confidence            2    122   1 57999999999999999999999999999999999875  6664  64 68899999999965 333


Q ss_pred             CCCCCCCCchhhhhhhh-hhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCeEEEEEec-CCCccCCC
Q 014049          337 TVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLG-GNLAVCPL  414 (431)
Q Consensus       337 ~~~~l~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~aP~  414 (431)
                      ...+|+.  .+.++..+ +.+.+ ..+....+..+.++++.   ..++.++++++..      .-.+..++ .|+..||+
T Consensus       243 ~~~~ll~--~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~---~~~~~~~~~~~~~------~~~i~~~s~~~p~~ap~  310 (421)
T 3nrn_A          243 ETVKLIG--RDYFDRDYLKQVDS-IEPSEGIKFNLAVPGEP---RIGNTIVFTPGLM------INGFNEPSALDKSLARE  310 (421)
T ss_dssp             HHHHHHC--GGGSCHHHHHHHHT-CCCCCEEEEEEEEESSC---SSCSSEEECTTSS------SCEEECGGGTCGGGSCT
T ss_pred             HHHHhcC--cccCCHHHHHHHhC-CCCCceEEEEEEEcCCc---ccCCeEEEcCCcc------eeeEeccCCCCCCcCCC
Confidence            3234331  11233221 12222 22334455555567652   2345566666532      11345556 58899999


Q ss_pred             CcEEEEEEcCCCCCC
Q 014049          415 GMVSLDLLSPLPHQM  429 (431)
Q Consensus       415 G~~~~~i~~~~p~~~  429 (431)
                      |+.++++.+++|...
T Consensus       311 G~~~~~~~~~~~~~~  325 (421)
T 3nrn_A          311 GYTLIMAHMALKNGN  325 (421)
T ss_dssp             TEEEEEEEEECTTCC
T ss_pred             CceEEEEEEeecccc
Confidence            999999999888653

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.95  E-value=1.2e-26  Score=230.67  Aligned_cols=316  Identities=13%  Similarity=0.086  Sum_probs=195.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      +||||||||++||+||++|+++|++|+|||+++++||+++++..+                                   
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~-----------------------------------   45 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYK-----------------------------------   45 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEET-----------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccC-----------------------------------
Confidence            589999999999999999999999999999999999999997654                                   


Q ss_pred             CCCCceeeecCCCeEEee---CchHHHHHHhcCcccccccccccceeeec-cC--------CceeecCCChhhhhccCCC
Q 014049          103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLD-AD--------AKLCSVPDSRAAIFKDKSL  170 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~---~~~~~~~l~~~~~~~~~~f~~~~~~~~~~-~~--------g~~~~~p~~~~~~~~~~~l  170 (431)
                          +|.+|. ||+.+..   ...+.+++.+.|....+.... ...+.+. .+        ++.+.++.    .  ...+
T Consensus        46 ----G~~~d~-G~~~~~~~~~~~~~~~l~~~lg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~  113 (425)
T 3ka7_A           46 ----GFQLSS-GAFHMLPNGPGGPLACFLKEVEASVNIVRSE-MTTVRVPLKKGNPDYVKGFKDISFND----F--PSLL  113 (425)
T ss_dssp             ----TEEEES-SSCSCBTTGGGSHHHHHHHHTTCCCCEEECC-CCEEEEESSTTCCSSTTCEEEEEGGG----G--GGGS
T ss_pred             ----CcEEcC-CCceEecCCCccHHHHHHHHhCCCceEEecC-CceEEeecCCCcccccccccceehhh----h--hhhC
Confidence                344566 4544321   125667777777654322221 1111111 01        33333321    1  1245


Q ss_pred             ChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHH-HHhcCCCCcchhhhhhchhh
Q 014049          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVLKTRD  249 (431)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~s~~~  249 (431)
                      ++.++..+...+..+..               ....+.++.+|++++..++.++.++.. ......  .++  .+++...
T Consensus       114 ~~~~~~~~~~~~~~~~~---------------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~s~~~  174 (425)
T 3ka7_A          114 SYKDRMKIALLIVSTRK---------------NRPSGSSLQAWIKSQVSDEWLIKFADSFCGWALS--LKS--DEVPVEE  174 (425)
T ss_dssp             CHHHHHHHHHHHHHTTT---------------SCCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHS--SCG--GGSBHHH
T ss_pred             CHHHHHHHHHHHHhhhh---------------cCCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhC--CCc--ccchHHH
Confidence            66666655544332211               012357899999987666666655432 111111  111  2345544


Q ss_pred             HHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCE
Q 014049          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (431)
Q Consensus       250 ~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~  329 (431)
                      .+..+..+.    .++.    ..+++||++.|+++|++.++++|++|+++++|++|..+  ++++++|++ +|++++||+
T Consensus       175 ~~~~~~~~~----~~~~----~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~gv~~-~g~~~~ad~  243 (425)
T 3ka7_A          175 VFEIIENMY----RFGG----TGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIE--NGKAAGIIA-DDRIHDADL  243 (425)
T ss_dssp             HHHHHHHHH----HHCS----CEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEE-TTEEEECSE
T ss_pred             HHHHHHHHH----hcCC----ccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEE--CCEEEEEEE-CCEEEECCE
Confidence            444333321    2231    56899999999999999999999999999999999987  788888986 588999999


Q ss_pred             EEEC-CCCCCCCCCCCchhhh--hhh-hhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCeEEEEEe
Q 014049          330 LVLD-PSFTVPGSLASSHQQL--QES-FQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQL  405 (431)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l--~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~  405 (431)
                      ||++ +.....+|+.. .+.+  +.. ...+.+ .......+..+.+++++.   .++.+++++..     ++...+..+
T Consensus       244 VV~a~~~~~~~~ll~~-~~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~  313 (425)
T 3ka7_A          244 VISNLGHAATAVLCSE-ALSKEADAAYFKMVGT-LQPSAGIKICLAADEPLV---GHTGVLLTPYT-----RRINGVNEV  313 (425)
T ss_dssp             EEECSCHHHHHHHTTT-TCCTTTTHHHHHHHHH-CCCBEEEEEEEEESSCSS---CSSSEEECCSS-----SSEEEEECG
T ss_pred             EEECCCHHHHHHhcCC-cccccCCHHHHHHhhC-cCCCceEEEEeecCCCcc---CcCEEEECCCh-----hhcceEEec
Confidence            9975 33332343321 1111  221 122221 223344555556787653   35666676642     234456666


Q ss_pred             c-CCCccCCCCcEEEEEEcCC
Q 014049          406 G-GNLAVCPLGMVSLDLLSPL  425 (431)
Q Consensus       406 ~-~~~~~aP~G~~~~~i~~~~  425 (431)
                      | .+++.||+|+.++++..+.
T Consensus       314 s~~~p~~ap~G~~~l~~~~~~  334 (425)
T 3ka7_A          314 TQADPELAPPGKHLTMCHQYV  334 (425)
T ss_dssp             GGTCGGGSCTTCEEEEEEEEE
T ss_pred             cCCCCCcCCCCCeEEEEEecc
Confidence            6 5889999999999887653

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.94  E-value=2.4e-25  Score=224.81  Aligned_cols=330  Identities=15%  Similarity=0.156  Sum_probs=199.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      .+||||||||++||+||..|+++|++|+|||+++++||+++|++.+                                  
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~----------------------------------   61 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA----------------------------------   61 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET----------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccC----------------------------------
Confidence            5799999999999999999999999999999999999999998643                                  


Q ss_pred             cCCCCceeeecCCCeEEee-CchHHHHHHhcCcccccccccc--cceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049          102 SQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSI--DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~~~~~~~~f~~~--~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                           ++.+|. |++++.. ...+.+++.+.|+.+.+.+...  ...+++. +|+.+.+|.+..+.+....++..++..+
T Consensus        62 -----g~~~~~-g~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~  134 (478)
T 2ivd_A           62 -----GYLVEQ-GPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYT-RGRLRSVPASPPAFLASDILPLGARLRV  134 (478)
T ss_dssp             -----TEEEES-SCCCEETTCHHHHHHHHHTTCGGGEECSCSSCCCEEEEE-TTEEEECCCSHHHHHTCSSSCHHHHHHH
T ss_pred             -----Ceeeec-ChhhhhhhhHHHHHHHHHcCCcceeeecCccccceEEEE-CCEEEECCCCHHHhccCCCCCHHHHHHH
Confidence                 355777 6887755 3467788899998765543321  1233343 7888888887766665555554433221


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHH-HhcCCCCcchhhhhhchhhHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYA-IAMADYDQEVSEYVLKTRDGINRLALY  257 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (431)
                            +.......         .....+.++.+|+++...++.++.++... ...  +..++  .++++...+..+..+
T Consensus       135 ------~~~~~~~~---------~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~~~  195 (478)
T 2ivd_A          135 ------AGELFSRR---------APEGVDESLAAFGRRHLGHRATQVLLDAVQTGI--YAGDV--EQLSVAATFPMLVKM  195 (478)
T ss_dssp             ------HGGGGCCC---------CCTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHH--HCCCT--TTBBHHHHCHHHHHH
T ss_pred             ------hhhhhcCC---------CCCCCCCCHHHHHHHhhCHHHHHHHHHHHhcee--ecCCH--HHhhHHHHhHHHHHH
Confidence                  22221110         01245689999998753333333333211 111  11121  234444433333222


Q ss_pred             Hhhhcc-------c----------cCCC----ccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEE
Q 014049          258 NSSIGR-------F----------QNAL----GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG  316 (431)
Q Consensus       258 ~~s~~~-------~----------g~~~----~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~g  316 (431)
                      ....+.       .          ....    +.+++++||+++|+++|++.+   |++|+++++|++|..+  +++ +.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~--~~~-~~  269 (478)
T 2ivd_A          196 EREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE--DGG-WR  269 (478)
T ss_dssp             HHHHSSHHHHHHHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC----C-CE
T ss_pred             HHhcCcHHHHHHHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec--CCe-EE
Confidence            111000       0          0000    237899999999999998754   7899999999999876  444 57


Q ss_pred             EEe---CCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCC
Q 014049          317 VRL---ASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSL  392 (431)
Q Consensus       317 V~~---~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  392 (431)
                      |++   .+|++++||+||++ |...+.+++    ++++..+....+...+..+.+..+.+++++-+......+++|... 
T Consensus       270 v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll----~~l~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-  344 (478)
T 2ivd_A          270 LIIEEHGRRAELSVAQVVLAAPAHATAKLL----RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAPDGFGFLVPAEE-  344 (478)
T ss_dssp             EEEEETTEEEEEECSEEEECSCHHHHHHHH----TTTCHHHHHHHHTCCBCCEEEEEEEECTTSSCCCCSSEEECCGGG-
T ss_pred             EEEeecCCCceEEcCEEEECCCHHHHHHHh----hccCHHHHHHHhcCCCCcEEEEEEEEccccCCCCCceEEEecCCC-
Confidence            877   68889999999975 433323332    223333222223334567778888888875222133445555321 


Q ss_pred             CCCCCCeEEEEEec-CCCccCCCCcEEEEEEcCC
Q 014049          393 FPEQVTSIRVLQLG-GNLAVCPLGMVSLDLLSPL  425 (431)
Q Consensus       393 ~~~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~~  425 (431)
                       .  .+...+...+ .++..+|+|+.++.+.+..
T Consensus       345 -~--~~~~~~~~~s~~~~~~~p~g~~~l~~~~~~  375 (478)
T 2ivd_A          345 -Q--RRMLGAIHASTTFPFRAEGGRVLYSCMVGG  375 (478)
T ss_dssp             -C--CSCCEEEEHHHHCGGGBSTTCEEEEEEEEC
T ss_pred             -C--CceEEEEEEcccCCCcCCCCCEEEEEEeCC
Confidence             1  2334444444 3567789998887766654

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.93  E-value=9.2e-25  Score=222.86  Aligned_cols=294  Identities=14%  Similarity=0.084  Sum_probs=185.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      ..+||||||||++||+||.+|+++|++|+|||+++++||+++|++.+                                 
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~---------------------------------   49 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ---------------------------------   49 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCT---------------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccC---------------------------------
Confidence            45899999999999999999999999999999999999999997642                                 


Q ss_pred             ccCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHH
Q 014049          101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM  179 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~  179 (431)
                           .++.+|+ |++++... ..+.+++.+.|+..+..+..  ...++..+|+.+.++...    . ..+++.+...+.
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~--~~~~~~~~g~~~~~~~~~----p-~~~~~~~~~~~~  116 (520)
T 1s3e_A           50 -----KVKYVDL-GGSYVGPTQNRILRLAKELGLETYKVNEV--ERLIHHVKGKSYPFRGPF----P-PVWNPITYLDHN  116 (520)
T ss_dssp             -----TTSCEES-SCCEECTTCHHHHHHHHHTTCCEEECCCS--SEEEEEETTEEEEECSSS----C-CCCSHHHHHHHH
T ss_pred             -----CCccccc-CceEecCCcHHHHHHHHHcCCcceecccC--CceEEEECCEEEEecCCC----C-CCCCHHHHHHHH
Confidence                 1344677 58877543 36778888888876543322  112122256655554321    0 113344444444


Q ss_pred             HHHHHHHcccCCCcccccc-ccccccccCCcHHHHHHhcCCChhHHHHHHHHH-hcCCCCcchhhhhhchhhHHHHHHHH
Q 014049          180 RFFKLVQGHLSLDESEENN-VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALY  257 (431)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~  257 (431)
                      +++..+............. .....++.+.++.+|+++...++.++.++.... ..  +..++  .++|+...+.    +
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~g~~~--~~~s~~~~~~----~  188 (520)
T 1s3e_A          117 NFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLC--VTAET--HEVSALWFLW----Y  188 (520)
T ss_dssp             HHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHH--HSSCT--TTSBHHHHHH----H
T ss_pred             HHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhh--cCCCh--HHhHHHHHHH----H
Confidence            4444333322111000000 000123567899999999888887777654321 11  11121  2345543322    3


Q ss_pred             Hhhhccc----c-CCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          258 NSSIGRF----Q-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       258 ~~s~~~~----g-~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      +...+..    . ...+...++.||+++|+++|++.   +|++|+++++|++|..+  ++++ .|++.+|+++.||+||+
T Consensus       189 ~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~~~ad~VI~  262 (520)
T 1s3e_A          189 VKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDL---LGDRVKLERPVIYIDQT--RENV-LVETLNHEMYEAKYVIS  262 (520)
T ss_dssp             HHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHH---HGGGEESSCCEEEEECS--SSSE-EEEETTSCEEEESEEEE
T ss_pred             HhhcCchhhhcccCCCcceEEEeCCHHHHHHHHHHH---cCCcEEcCCeeEEEEEC--CCeE-EEEECCCeEEEeCEEEE
Confidence            3221110    0 00122568999999999998764   48899999999999876  5554 48888999999999997


Q ss_pred             C-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       333 ~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      + |...+.++.  ++|+||..+....+...++.+.+..+.+++++
T Consensus       263 a~p~~~l~~l~--~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~  305 (520)
T 1s3e_A          263 AIPPTLGMKIH--FNPPLPMMRNQMITRVPLGSVIKCIVYYKEPF  305 (520)
T ss_dssp             CSCGGGGGGSE--EESCCCHHHHHHTTSCCBCCEEEEEEECSSCG
T ss_pred             CCCHHHHccee--eCCCCCHHHHHHHHhCCCcceEEEEEEeCCCc
Confidence            5 544444543  45667766555445556778888888888886

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.92  E-value=4.8e-24  Score=213.73  Aligned_cols=292  Identities=11%  Similarity=0.108  Sum_probs=177.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      +.++||||||||++||+||.+|+++|++|+|||+++++||++++.+.+                                
T Consensus         3 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------------------   50 (453)
T 2yg5_A            3 TLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTID--------------------------------   50 (453)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEET--------------------------------
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccC--------------------------------
Confidence            456899999999999999999999999999999999999999987643                                


Q ss_pred             cccCCCCceeeecCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                             ++.+|+ |++++.. ...+.+++.+.|+..+..+......+. ..+|+...+....      ..+++.....+
T Consensus        51 -------g~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~~~~~~~------~~~~~~~~~~~  115 (453)
T 2yg5_A           51 -------GAVLEI-GGQWVSPDQTALISLLDELGLKTFERYREGESVYI-SSAGERTRYTGDS------FPTNETTKKEM  115 (453)
T ss_dssp             -------TEEEEC-SCCCBCTTCHHHHHHHHHTTCCEEECCCCSEEEEE-CTTSCEEEECSSS------CSCCHHHHHHH
T ss_pred             -------Cceecc-CCeEecCccHHHHHHHHHcCCcccccccCCCEEEE-eCCCceeeccCCC------CCCChhhHHHH
Confidence                   234566 4665433 346778888888876555433222222 2125544443210      01223222223


Q ss_pred             HHHHHHHHcc----cCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhh-hhchhhHHHH
Q 014049          179 MRFFKLVQGH----LSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEY-VLKTRDGINR  253 (431)
Q Consensus       179 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~  253 (431)
                      .+++..+...    ....++..   .....+.+.++.+|++++..++.++.++.... ...+..++  . ++|+...+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~s~~~~~~~  189 (453)
T 2yg5_A          116 DRLIDEMDDLAAQIGAEEPWAH---PLARDLDTVSFKQWLINQSDDAEARDNIGLFI-AGGMLTKP--AHSFSALQAVLM  189 (453)
T ss_dssp             HHHHHHHHHHHHHHCSSCGGGS---TTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHH-CCCCCCSC--TTSSBHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCCCCC---cchhhhhhccHHHHHHhhcCCHHHHHHHHHHH-HhhcccCC--cccccHHHHHHH
Confidence            3322222111    11111000   00123457899999999888888887655432 12222222  2 3455443332


Q ss_pred             HHHHHhhhccc----cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCE
Q 014049          254 LALYNSSIGRF----QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK  329 (431)
Q Consensus       254 ~~~~~~s~~~~----g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~  329 (431)
                          +...+.+    ....+..++++||+++|+++|++.   +|++|+++++|++|..+  +++.+.|++ +|++++||+
T Consensus       190 ----~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~---lg~~i~~~~~V~~i~~~--~~~~v~v~~-~~~~~~ad~  259 (453)
T 2yg5_A          190 ----AASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEA---LGDDVFLNAPVRTVKWN--ESGATVLAD-GDIRVEASR  259 (453)
T ss_dssp             ----HHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHH---HGGGEECSCCEEEEEEE--TTEEEEEET-TTEEEEEEE
T ss_pred             ----hccCCcHhhhccCCCcceEEEcCChHHHHHHHHHh---cCCcEEcCCceEEEEEe--CCceEEEEE-CCeEEEcCE
Confidence                2221111    000012568999999999998764   48999999999999987  555245764 788999999


Q ss_pred             EEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       330 VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      ||++ |...+.+++  ++++||..+....+...++.+.+..+.+++++
T Consensus       260 VI~a~p~~~~~~l~--~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~  305 (453)
T 2yg5_A          260 VILAVPPNLYSRIS--YDPPLPRRQHQMHQHQSLGLVIKVHAVYETPF  305 (453)
T ss_dssp             EEECSCGGGGGGSE--EESCCCHHHHHHGGGEEECCEEEEEEEESSCG
T ss_pred             EEEcCCHHHHhcCE--eCCCCCHHHHHHHhcCCCcceEEEEEEECCCC
Confidence            9975 544445543  34556665444333344667788888888875

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.92  E-value=3.4e-24  Score=217.82  Aligned_cols=342  Identities=13%  Similarity=0.085  Sum_probs=194.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      ...+||+|||||++||+||+.|+++|++|+|||+++++||++++++.+                                
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------------------   58 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD--------------------------------   58 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET--------------------------------
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC--------------------------------
Confidence            346899999999999999999999999999999999999999997543                                


Q ss_pred             cccCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccc-eeeeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDA-TFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~-~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (431)
                             ++.+|. |++++... ..+.+++.+.|+.+.+.|..... .|.+ .+|+.+.+|.+...++....++..++..
T Consensus        59 -------g~~~~~-g~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~~~~  129 (504)
T 1sez_A           59 -------GLIWDE-GANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIA-RNGTPVLLPSNPIDLIKSNFLSTGSKLQ  129 (504)
T ss_dssp             -------TEEEES-SCCCBCCCSHHHHHHHHHTTCGGGEECCSSCCCEEEE-SSSSEEECCSSHHHHHHSSSSCHHHHHH
T ss_pred             -------CeEEec-CCcccccCcHHHHHHHHHcCCcccceeccCCCceEEE-ECCeEEECCCCHHHHhccccCCHHHHHH
Confidence                   355677 57776543 46788899999877666543222 3334 3788888888766665555565544433


Q ss_pred             HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHH-HHhcCCCCcchhhhhhchhhHHHHHHH
Q 014049          178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVLKTRDGINRLAL  256 (431)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~  256 (431)
                      +.  .......... .     .  .....+.++.+|+++..-++.++.++.. ....  +..++  .++|+...+..+..
T Consensus       130 ~~--~~~~~~~~~~-~-----~--~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~s~~~~~~~~~~  195 (504)
T 1sez_A          130 ML--LEPILWKNKK-L-----S--QVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGT--CGGDP--DSLSMHHSFPELWN  195 (504)
T ss_dssp             HH--THHHHC------------------CCCBHHHHHHHHHCHHHHHTTHHHHHHHH--HSCCG--GGSBHHHHCHHHHH
T ss_pred             Hh--HhhhccCccc-c-----c--ccCCCCccHHHHHHHHcCHHHHHHHHHHHHccc--cCCCh--HHhhHHHHhHHHHH
Confidence            21  1111110000 0     0  0113458999999865323333333321 1111  11222  23454433322221


Q ss_pred             HHhh------------hccccC-------------CCccEEeecCCcchHHHHHHHHHHhcC-cEEEeCcceeEEEEecC
Q 014049          257 YNSS------------IGRFQN-------------ALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQN  310 (431)
Q Consensus       257 ~~~s------------~~~~g~-------------~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~  310 (431)
                      +...            +...+.             ....+++++||+++|+++|++   .+| ++|++|++|++|..+  
T Consensus       196 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~---~l~~~~i~~~~~V~~I~~~--  270 (504)
T 1sez_A          196 LEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICK---DLREDELRLNSRVLELSCS--  270 (504)
T ss_dssp             HHHHTSCHHHHHHHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHT---TSCTTTEETTCCEEEEEEE--
T ss_pred             HHHHhCCHHHHHHHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHh---hcccceEEcCCeEEEEEec--
Confidence            1110            000000             001257899999999998875   456 899999999999987  


Q ss_pred             CCc-----EEEEEeC--CC---cEEEeCEEEEC-CCCCCCCCCCC-chhhhhhhhhhhcccCCCCeEEEEEEEeCCCC-C
Q 014049          311 SGS-----YKGVRLA--SG---QDILSHKLVLD-PSFTVPGSLAS-SHQQLQESFQAFSLSDNKGKVARGICITRSSL-K  377 (431)
Q Consensus       311 ~g~-----~~gV~~~--~G---~~i~Ad~VI~~-p~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  377 (431)
                      +++     .+.|++.  +|   ++++||+||++ |...+.+++.. ..++++...  + +...+..+.+..+.+++++ .
T Consensus       271 ~~~~~~~~~~~v~~~~~~g~~~~~~~ad~VI~a~p~~~l~~ll~~~~~~~~~~~~--l-~~~~~~~~~~v~l~~~~~~~~  347 (504)
T 1sez_A          271 CTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNF--I-PEVDYVPLSVVITTFKRENVK  347 (504)
T ss_dssp             CSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTT--S-CCCCEEEEEEEEEEEEGGGBS
T ss_pred             CCCCcccceEEEEEcCCCCccceeEECCEEEECCCHHHHHHHhhcccCCcccHHH--H-hcCCCCceEEEEEEEchhhcC
Confidence            443     2456554  46   67899999975 44333444310 011122111  1 1223445666666677753 3


Q ss_pred             CCCCceEEEeCCCCCCCCCCCeEEEEEec-CCCccCCCCcEEEEEEcCC
Q 014049          378 PDLSNFLVIFPPRSLFPEQVTSIRVLQLG-GNLAVCPLGMVSLDLLSPL  425 (431)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~i~v~~~~-~~~~~aP~G~~~~~i~~~~  425 (431)
                      .....+.+++|+..... ..+..-+...+ ..+..+|+|+.++...+.-
T Consensus       348 ~~~~~~~~l~~~~~~~~-g~~~~~~~~~s~~~~~~~p~g~~~l~~~~~g  395 (504)
T 1sez_A          348 YPLEGFGVLVPSKEQQH-GLKTLGTLFSSMMFPDRAPNNVYLYTTFVGG  395 (504)
T ss_dssp             SCCCSSEEECCGGGGGG-TCCSSEEEEHHHHCGGGSCTTEEEEEEEEES
T ss_pred             CCCCceEEEcCCCCCCC-CCccceEEeeccccCCcCCCCCEEEEEEeCC
Confidence            33345667777432110 01111122222 3566789998887766543

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.92  E-value=1.4e-24  Score=221.06  Aligned_cols=319  Identities=15%  Similarity=0.089  Sum_probs=173.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      .+||||||||++||+||++|++ .|++|+|||+++++||+++|+..                                  
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~----------------------------------   55 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVT----------------------------------   55 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEEC----------------------------------
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEe----------------------------------
Confidence            5899999999999999999998 49999999999999999998532                                  


Q ss_pred             ccCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccce-eeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~-~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                          ..+|.+|. ||++++... .+.+++.+.+... .+|...++. +++ .+|+.+++|... .+.   .+........
T Consensus        56 ----~~G~~~D~-G~h~~~~~~~~v~~l~~e~~~~~-~~~~~~~~~~~i~-~~g~~~~~p~~~-~~~---~~~~~~~~~~  124 (513)
T 4gde_A           56 ----PEGFLYDV-GGHVIFSHYKYFDDCLDEALPKE-DDWYTHQRISYVR-CQGQWVPYPFQN-NIS---MLPKEEQVKC  124 (513)
T ss_dssp             ----TTSCEEES-SCCCCCCCBHHHHHHHHHHSCSG-GGEEEEECCEEEE-ETTEEEESSGGG-GGG---GSCHHHHHHH
T ss_pred             ----cCCEEEEe-CceEecCCCHHHHHHHHHhCCcc-ceeEEecCceEEE-ECCeEeecchhh-hhh---hcchhhHHHH
Confidence                13567888 698876655 5666777665422 233333332 333 378888887532 111   2233333222


Q ss_pred             -HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHH--HHHhcCCCCcchhhhhhchhhHH----
Q 014049          179 -MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGI----  251 (431)
Q Consensus       179 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~s~~~~~----  251 (431)
                       ..++.......            .......++.+|+.+.. .+.+.+.+.  +...++....    .+++.....    
T Consensus       125 ~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~-g~~l~~~~~~~~~~~~~~~~~----~~ls~~~~~~~~~  187 (513)
T 4gde_A          125 IDGMIDAALEAR------------VANTKPKTFDEWIVRMM-GTGIADLFMRPYNFKVWAVPT----TKMQCAWLGERVA  187 (513)
T ss_dssp             HHHHHHHHHHHH------------TCCSCCCSHHHHHHHHH-HHHHHHHTHHHHHHHHHSSCG----GGBCSGGGCSSCC
T ss_pred             HHHHHHHHHhhh------------cccccccCHHHHHHHhh-hhhhhhhhcchhhhhhccCCh----HHhhHHHHHHhhc
Confidence             22222211110            01123456777765421 111222111  1111111111    112221110    


Q ss_pred             -----HHHHHHHh--hhccccCCCccEEe-ecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc
Q 014049          252 -----NRLALYNS--SIGRFQNALGALIY-PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ  323 (431)
Q Consensus       252 -----~~~~~~~~--s~~~~g~~~~~~~~-p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~  323 (431)
                           ......+.  ....++.. ..+.+ ++||+++|+++|++.+...|++|+++++|++|..+  ++   .|++.+|+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~--~~---~v~~~~G~  261 (513)
T 4gde_A          188 APNLKAVTTNVILGKTAGNWGPN-ATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN--NK---TVTLQDGT  261 (513)
T ss_dssp             CCCHHHHHHHHHHTCCCCSCBTT-BEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT--TT---EEEETTSC
T ss_pred             ccchhhhhhhhhhcccccccccc-cceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc--CC---EEEEcCCC
Confidence                 01111111  01111111 12344 58999999999999999999999999999999875  55   35578999


Q ss_pred             EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC-CCCceEEEeCCCCCCCCCCCeEE
Q 014049          324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLFPEQVTSIR  401 (431)
Q Consensus       324 ~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~  401 (431)
                      ++.||+||++ |...+..++.  ++++....    ....+..+....+.++.+... ....+.+.+|....+     .-.
T Consensus       262 ~~~ad~vI~t~P~~~l~~~l~--~~~~~~~~----~~l~y~~~~~v~l~~~~~~~~~~~~~~~~y~~~~~~~-----f~R  330 (513)
T 4gde_A          262 TIGYKKLVSTMAVDFLAEAMN--DQELVGLT----KQLFYSSTHVIGVGVRGSRPERIGDKCWLYFPEDNCP-----FYR  330 (513)
T ss_dssp             EEEEEEEEECSCHHHHHHHTT--CHHHHHHH----TTCCEEEEEEEEEEEESSCCTTTTTCCEEECCSTTCS-----CSE
T ss_pred             EEECCEEEECCCHHHHHHhcC--chhhHhhh----hcccCCceEEEEEEEeccccccccccceeeccCCCCc-----eeE
Confidence            9999999975 4333333331  11122211    122334444444445554322 234566777654332     223


Q ss_pred             EEEec-CCCccCCCCcEEE
Q 014049          402 VLQLG-GNLAVCPLGMVSL  419 (431)
Q Consensus       402 v~~~~-~~~~~aP~G~~~~  419 (431)
                      +..++ ..+..+|+|...+
T Consensus       331 i~~~~n~sp~~~p~~~~~~  349 (513)
T 4gde_A          331 ATIFSNYSPYNQPEASAAL  349 (513)
T ss_dssp             EECGGGTCGGGSCCTTCCE
T ss_pred             EEecCCCCcccCCCCCceE
Confidence            44444 2455666665444

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.91  E-value=7.1e-24  Score=213.21  Aligned_cols=327  Identities=13%  Similarity=0.144  Sum_probs=184.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISN   95 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (431)
                      ++||||||||++||+||.+|+++|      ++|+|||+++++||+++|...+                            
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~----------------------------   56 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKD----------------------------   56 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCT----------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccC----------------------------
Confidence            489999999999999999999999      9999999999999999997643                            


Q ss_pred             cccccccCCCCceeeecCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCCh--------hhhhc
Q 014049           96 YASRLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFK  166 (431)
Q Consensus        96 ~~~~~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~--------~~~~~  166 (431)
                                 ++.+|. |++++.. ...+.+++.+.|+...+........+++. +|+...+|...        ..++.
T Consensus        57 -----------g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~p~~~~~~~~  123 (470)
T 3i6d_A           57 -----------GYIIER-GPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLV-NRTLHPMPKGAVMGIPTKIAPFVS  123 (470)
T ss_dssp             -----------TCCEES-SCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEEC-SSCEEECCC---------------
T ss_pred             -----------CEEecc-ChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEE-CCEEEECCCCcccCCcCchHHhhc
Confidence                       344566 5765533 34677888899987665432223344443 67777766431        11111


Q ss_pred             cCCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHH-HHhcCCCCcchhhhhh
Q 014049          167 DKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMADYDQEVSEYVL  245 (431)
Q Consensus       167 ~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~  245 (431)
                      ...++..++..  ........             ......+.++.+|+++....+....++.. ..+.  +..+.  .++
T Consensus       124 ~~~~~~~~~~~--~~~~~~~~-------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~  184 (470)
T 3i6d_A          124 TGLFSLSGKAR--AAMDFILP-------------ASKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGI--YAGDI--DKL  184 (470)
T ss_dssp             ------CCSHH--HHHHHHSC-------------CCSSSSCCBHHHHHHHHSCHHHHHHTHHHHHHHT--TCSCT--TTB
T ss_pred             cCcCCHHHHHH--HhcCcccC-------------CCCCCCCcCHHHHHHHhcCHHHHHHhccchhcEE--ecCCH--HHh
Confidence            11122111111  01111100             01234567999999874333323332221 1122  22222  224


Q ss_pred             chhhHHHHHHHHHhhhccc-----------------cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEe
Q 014049          246 KTRDGINRLALYNSSIGRF-----------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (431)
Q Consensus       246 s~~~~~~~~~~~~~s~~~~-----------------g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~  308 (431)
                      +....+..+..+....+..                 ....+.+++++||++.|+++|++.+..  ++|+++++|++|..+
T Consensus       185 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  262 (470)
T 3i6d_A          185 SLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS  262 (470)
T ss_dssp             BHHHHCGGGCC-------------------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHhcCcHHHHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc
Confidence            4433222211110000000                 000124778999999999988765433  799999999999886


Q ss_pred             cCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCC-CCCceEEE
Q 014049          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVI  386 (431)
Q Consensus       309 ~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~  386 (431)
                        +++ +.|++++|++++||+||++ |...+.+++.  ++++....    +...+..+.+..+.+++++-+ +.....++
T Consensus       263 --~~~-~~v~~~~g~~~~ad~vi~a~p~~~~~~l~~--~~~~~~~~----~~~~~~~~~~v~l~~~~~~~~~~~~~~g~l  333 (470)
T 3i6d_A          263 --GSC-YSLELDNGVTLDADSVIVTAPHKAAAGMLS--ELPAISHL----KNMHSTSVANVALGFPEGSVQMEHEGTGFV  333 (470)
T ss_dssp             --SSS-EEEEESSSCEEEESEEEECSCHHHHHHHTT--TSTTHHHH----HTCEEEEEEEEEEEESSTTCCCSSCSSEEE
T ss_pred             --CCe-EEEEECCCCEEECCEEEECCCHHHHHHHcC--CchhhHHH----hcCCCCceEEEEEEECchhcCCCCCCeEEE
Confidence              444 5788889989999999964 4443333331  22233222    223456677777788887632 23345566


Q ss_pred             eCCCCCCCCCCCeEEEEEecC--CCccCCCCcEEEEEEcC
Q 014049          387 FPPRSLFPEQVTSIRVLQLGG--NLAVCPLGMVSLDLLSP  424 (431)
Q Consensus       387 ~~~~~~~~~~~~~i~v~~~~~--~~~~aP~G~~~~~i~~~  424 (431)
                      +|...     ...++.....+  .+..+|+|+.++.+.+-
T Consensus       334 ~~~~~-----~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~  368 (470)
T 3i6d_A          334 ISRNS-----DFAITACTWTNKKWPHAAPEGKTLLRAYVG  368 (470)
T ss_dssp             ECSTT-----CCSEEEEEEHHHHCGGGSCTTCEEEEEEEC
T ss_pred             ccCCC-----CCCceEEEEEcCcCCCcCCCCCEEEEEEEC
Confidence            66532     22333333221  35678999888877763

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=212.54  Aligned_cols=327  Identities=13%  Similarity=0.097  Sum_probs=185.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      +||+|||||++||+||++|+++|+  +|+|||+++++||+++++...                                 
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~---------------------------------   49 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP---------------------------------   49 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT---------------------------------
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc---------------------------------
Confidence            699999999999999999999999  999999999999999996532                                 


Q ss_pred             ccCCCCceeeecCCCeEEeeC----chHHHHHHhcCccccccccc-----ccceeeeccCCceeecCCChhhhhcc-CCC
Q 014049          101 LSQHPRNFNLDVSGPRVLFCA----DHAVDLMLKSGASHYLEFKS-----IDATFMLDADAKLCSVPDSRAAIFKD-KSL  170 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~----~~~~~~l~~~~~~~~~~f~~-----~~~~~~~~~~g~~~~~p~~~~~~~~~-~~l  170 (431)
                           .++.+|. ||+.+...    ..+.+++.+.|+.+.+....     ....|++. +|+..++|.+...++.. ..+
T Consensus        50 -----~g~~~d~-G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~  122 (477)
T 3nks_A           50 -----NGAIFEL-GPRGIRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYV-GGALHALPTGLRGLLRPSPPF  122 (477)
T ss_dssp             -----TSCEEES-SCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEE-TTEEEECCCSSCC---CCTTS
T ss_pred             -----CCeEEEe-CCCcccCCCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEE-CCEEEECCCChhhcccccchh
Confidence                 2355677 57765442    24667788888865433211     11234443 78888888754333321 111


Q ss_pred             ChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHHHH-HhcCCCCcchhhhhhchh
Q 014049          171 GLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVLYA-IAMADYDQEVSEYVLKTR  248 (431)
Q Consensus       171 ~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~~~-~~~~~~~~~~~~~~~s~~  248 (431)
                      ...   .+.+.+   ......          .....+.++.+|+++.. .+.+.+ ++... .+.  +..+.  .++|..
T Consensus       123 ~~~---~~~~~~---~~~~~~----------~~~~~~~s~~~~~~~~~-g~~~~~~~~~~~~~~~--~~~~~--~~ls~~  181 (477)
T 3nks_A          123 SKP---LFWAGL---RELTKP----------RGKEPDETVHSFAQRRL-GPEVASLAMDSLCRGV--FAGNS--RELSIR  181 (477)
T ss_dssp             CSC---SSHHHH---TTTTSC----------CCCSSCCBHHHHHHHHH-CHHHHHHTHHHHHHHH--HSSCT--TTBBHH
T ss_pred             hhH---HHHHHH---HhhhcC----------CCCCCCcCHHHHHHHhh-CHHHHHHHHHHHhccc--ccCCH--HHhhHH
Confidence            111   111111   111100          11234678999998632 222222 22111 111  11221  235555


Q ss_pred             hHHHHHHHHHhhhccc----------------------cCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEE
Q 014049          249 DGINRLALYNSSIGRF----------------------QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLL  306 (431)
Q Consensus       249 ~~~~~~~~~~~s~~~~----------------------g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~  306 (431)
                      ..+..+..+....+..                      ......+++++||++.|+++|++.++..|++|+++++|++|.
T Consensus       182 ~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~  261 (477)
T 3nks_A          182 SCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLS  261 (477)
T ss_dssp             HHCHHHHHHHHHHSCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEE
Confidence            5444333221111100                      000113789999999999999999999999999999999998


Q ss_pred             EecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEE
Q 014049          307 TDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLV  385 (431)
Q Consensus       307 ~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  385 (431)
                      .+  +++.+.|++ +|++++||+||++ |.+.+..++....+++.+   .+. ...+..+.+..+.+++++-+. .....
T Consensus       262 ~~--~~~~~~v~~-~~~~~~ad~vv~a~p~~~~~~ll~~~~~~~~~---~l~-~~~~~~~~~v~l~~~~~~~~~-~~~g~  333 (477)
T 3nks_A          262 LQ--AEGRWKVSL-RDSSLEADHVISAIPASVLSELLPAEAAPLAR---ALS-AITAVSVAVVNLQYQGAHLPV-QGFGH  333 (477)
T ss_dssp             EC--GGGCEEEEC-SSCEEEESEEEECSCHHHHHHHSCGGGHHHHH---HHH-TCCEEEEEEEEEEETTCCCSS-CSSEE
T ss_pred             Ec--CCceEEEEE-CCeEEEcCEEEECCCHHHHHHhccccCHHHHH---HHh-cCCCCcEEEEEEEECCCCCCC-CCceE
Confidence            76  444457765 6678999999975 444334443222222222   222 224556666666778875322 23355


Q ss_pred             EeCCCCCCCCCCCeEEEEEecC--CCccC-CCCcEEEEEEc
Q 014049          386 IFPPRSLFPEQVTSIRVLQLGG--NLAVC-PLGMVSLDLLS  423 (431)
Q Consensus       386 ~~~~~~~~~~~~~~i~v~~~~~--~~~~a-P~G~~~~~i~~  423 (431)
                      ++|+..     +..+.-..+++  -+..+ |+|+.++.+++
T Consensus       334 l~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~  369 (477)
T 3nks_A          334 LVPSSE-----DPGVLGIVYDSVAFPEQDGSPPGLRVTVML  369 (477)
T ss_dssp             ECCTTT-----CSSEEEEECHHHHCGGGSTTTTCEEEEEEE
T ss_pred             EccCCC-----CCCceEEEEeccccCCCCCCCCceEEEEEE
Confidence            566432     11232333332  22222 34778777665

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.91  E-value=5e-24  Score=216.10  Aligned_cols=295  Identities=15%  Similarity=0.113  Sum_probs=178.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      +||+|||||++||+||..|+++|++|+|||+++++||+++|++.+                                   
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~-----------------------------------   84 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID-----------------------------------   84 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEET-----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccC-----------------------------------
Confidence            899999999999999999999999999999999999999997643                                   


Q ss_pred             CCCCceeeecCCCeEEee-CchHHHHHHhcCccccccccc----ccceeeeccC--CceeecCCChhhhhccCCCChHHH
Q 014049          103 QHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKS----IDATFMLDAD--AKLCSVPDSRAAIFKDKSLGLMEK  175 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~~~~~~~~f~~----~~~~~~~~~~--g~~~~~p~~~~~~~~~~~l~~~~k  175 (431)
                          ++.+|+ |++++.. ...+.+++.+.|+.+.+....    ....|.+. +  |+...+|..  +...      .-.
T Consensus        85 ----g~~~d~-G~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~--~~~~------~~~  150 (495)
T 2vvm_A           85 ----GYPYEM-GGTWVHWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLR-TNPTTSTYMTHE--AEDE------LLR  150 (495)
T ss_dssp             ----TEEEEC-SCCCBCTTSHHHHHHHHHTTCTTCEEESCCCSSSCCEEEEE-SSTTCCEEECHH--HHHH------HHH
T ss_pred             ----CeeecC-CCeEecCccHHHHHHHHHcCCcceeecccccCCCceEEEec-CCCCceeecCHH--HHHH------HHH
Confidence                355777 6887643 346778888888855443322    12233332 3  444444421  1100      001


Q ss_pred             HHHHHHHH----HHHcccCCCccccccccccccccCCcHHHHHHhcC--CChhHHHHHHHHHhcCCCCcchhhhhhchhh
Q 014049          176 NQLMRFFK----LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK--LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD  249 (431)
Q Consensus       176 ~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~  249 (431)
                      ..+.+|++    ..+..... +..........++.+.|+.+|+++++  .++.++.++...+... +..+.  +++|+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~  226 (495)
T 2vvm_A          151 SALHKFTNVDGTNGRTVLPF-PHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLC-SGGTL--ENSSFGE  226 (495)
T ss_dssp             HHHHHHHCSSSSTTTTTCSC-TTSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHH-HSSCT--TTSBHHH
T ss_pred             HHHHHHHccchhhhhhcCCC-CCCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHh-cCCCc--chhhHHH
Confidence            11222222    11111000 00000000012345789999999877  7777776654321110 11111  2245544


Q ss_pred             HHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeC
Q 014049          250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSH  328 (431)
Q Consensus       250 ~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad  328 (431)
                      .+..+......+..+.. ....++++||+++|+++|.+.+...| ++|+++++|++|..+  ++. +.|++.+|++++||
T Consensus       227 ~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad  302 (495)
T 2vvm_A          227 FLHWWAMSGYTYQGCMD-CLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE--RDA-ARVTARDGREFVAK  302 (495)
T ss_dssp             HHHHHHHTTSSHHHHHH-HHHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC--SSS-EEEEETTCCEEEEE
T ss_pred             HHHHHHHcCCCHHHHHh-hhceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcC
Confidence            43322211000000000 01156899999999999999999898 999999999999876  444 56888889899999


Q ss_pred             EEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          329 KLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       329 ~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      +||++ |...+..+.  ++|+||..+....+...+..+.+..+.+++++
T Consensus       303 ~vI~a~~~~~l~~i~--~~p~lp~~~~~ai~~~~~~~~~kv~l~~~~~~  349 (495)
T 2vvm_A          303 RVVCTIPLNVLSTIQ--FSPALSTERISAMQAGHVSMCTKVHAEVDNKD  349 (495)
T ss_dssp             EEEECCCGGGGGGSE--EESCCCHHHHHHHHHCCCCCCEEEEEEESCGG
T ss_pred             EEEECCCHHHHhhee--eCCCCCHHHHHHHHhcCCCceeEEEEEECCcc
Confidence            99965 444444442  45666655444333445667788888888865

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.91  E-value=3.2e-23  Score=209.06  Aligned_cols=327  Identities=15%  Similarity=0.166  Sum_probs=193.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      .++||+|||||++||+||..|+++|  ++|+|||+++++||++++....                               
T Consensus         3 ~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~-------------------------------   51 (475)
T 3lov_A            3 SSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYRED-------------------------------   51 (475)
T ss_dssp             CSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECST-------------------------------
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeC-------------------------------
Confidence            4689999999999999999999999  9999999999999999997643                               


Q ss_pred             ccccCCCCceeeecCCCeEEee-CchHHHHHHhcCcccccccccccceeeeccCCceeecCCC--------hhhhhccCC
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKDKS  169 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~-~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~--------~~~~~~~~~  169 (431)
                              ++.+|. |++.+.. ...+.+++.+.|+...+........+++. +|+...+|..        ...++....
T Consensus        52 --------g~~~~~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~p~~~~~~~~~~~  121 (475)
T 3lov_A           52 --------GFTIER-GPDSYVARKHILTDLIEAIGLGEKLVRNNTSQAFILD-TGGLHPIPKGAVMGIPTDLDLFRQTTL  121 (475)
T ss_dssp             --------TCCEES-SCCCEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEE-TTEEEECCSSEETTEESCHHHHTTCSS
T ss_pred             --------CEEEec-CchhhhcccHHHHHHHHHcCCcceEeecCCCceEEEE-CCEEEECCCcccccCcCchHHHhhccC
Confidence                    334566 5665533 34678888899987654433223344443 6777776643        344455556


Q ss_pred             CChHHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHH-HhcCCCCcchhhhhhchh
Q 014049          170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYA-IAMADYDQEVSEYVLKTR  248 (431)
Q Consensus       170 l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~s~~  248 (431)
                      ++..++..+..+   ......         .......+.++.+|+++....+....++... .+.  +..+.  +++++.
T Consensus       122 ~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~--~~ls~~  185 (475)
T 3lov_A          122 LTEEEKQEVADL---LLHPSD---------SLRIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGI--YAGNI--DQMSTF  185 (475)
T ss_dssp             SCHHHHHHHHHH---HHSCCT---------TCCCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHGG--GCCCT--TTSBST
T ss_pred             CChhHHHHhhCc---ccCCcc---------cccCCCCCcCHHHHHHHHhCHHHHHHHHHHHhcee--ecCCh--HHcCHH
Confidence            666555422222   111100         0011345689999998732222222222211 122  22222  234554


Q ss_pred             hHHHHHHHHHhhhccc-------c-------------CCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEe
Q 014049          249 DGINRLALYNSSIGRF-------Q-------------NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTD  308 (431)
Q Consensus       249 ~~~~~~~~~~~s~~~~-------g-------------~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~  308 (431)
                      ..+..+..+....+..       .             ...+.+++++||++.|+++|++.+..  ++|+++++|++|..+
T Consensus       186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~  263 (475)
T 3lov_A          186 ATYPQFVANEQKAGSLFEGMRLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE  263 (475)
T ss_dssp             TTCHHHHHHHHHHSSHHHHHHHTCC--------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe
Confidence            4444333222111100       0             00134788999999999998775433  799999999999887


Q ss_pred             cCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEe
Q 014049          309 QNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIF  387 (431)
Q Consensus       309 ~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  387 (431)
                        +++ +.|++.+| +++||+||++ |...+.+++.  ++++ +.   + +...+..+.+..+.+++++........+++
T Consensus       264 --~~~-~~v~~~~g-~~~ad~vV~a~p~~~~~~ll~--~~~~-~~---~-~~~~~~~~~~v~l~~~~~~~~~~~g~g~l~  332 (475)
T 3lov_A          264 --DGR-YRLKTDHG-PEYADYVLLTIPHPQVVQLLP--DAHL-PE---L-EQLTTHSTATVTMIFDQQQSLPIEGTGFVV  332 (475)
T ss_dssp             --TTE-EEEECTTC-CEEESEEEECSCHHHHHHHCT--TSCC-HH---H-HTCCEEEEEEEEEEEECCSSCSSSSSEEEE
T ss_pred             --CCE-EEEEECCC-eEECCEEEECCCHHHHHHHcC--ccCH-HH---H-hcCCCCeEEEEEEEECCcCCCCCCCEEEEe
Confidence              554 56888888 7999999965 5443334331  2222 11   1 223466777788888988732234445666


Q ss_pred             CCCCCCCCCCCeEEEEEecC--CCccCCCCcEEEEEEc
Q 014049          388 PPRSLFPEQVTSIRVLQLGG--NLAVCPLGMVSLDLLS  423 (431)
Q Consensus       388 ~~~~~~~~~~~~i~v~~~~~--~~~~aP~G~~~~~i~~  423 (431)
                      |+..     ...++-....+  .+..+|+ ..++...+
T Consensus       333 ~~~~-----~~~~~~~~~~s~~~~~~~p~-~~~l~~~~  364 (475)
T 3lov_A          333 NRRA-----PYSITACTAIDQKWNHSAPD-HTVLRAFV  364 (475)
T ss_dssp             CTTS-----SCSEEEEEEHHHHCTTTCTT-EEEEEEEE
T ss_pred             cCCC-----CCceEEEEEEcccCCCCCCC-cEEEEEEe
Confidence            6542     22333333322  3456676 55555544

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.88  E-value=2.3e-22  Score=202.90  Aligned_cols=322  Identities=14%  Similarity=0.113  Sum_probs=181.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCccccc-ChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSL-SIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      ..+||+|||||++||+||..|+++| ++|+|+|+++++||+++++ ..                                
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~--------------------------------   55 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDE--------------------------------   55 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECT--------------------------------
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecC--------------------------------
Confidence            4689999999999999999999999 8999999999999999985 32                                


Q ss_pred             ccccCCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHH
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ  177 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~  177 (431)
                             .++.+|. |++.++... .+.+++.+.. .++......  .+++. +|+++.+|...  .+  ..++..++..
T Consensus        56 -------~g~~~~~-g~~~~~~~~~~~~~l~~~~~-~~~~~~~~~--~~~~~-~g~~~~~P~~~--~~--~~l~~~~~~~  119 (484)
T 4dsg_A           56 -------NGFTWDL-GGHVIFSHYQYFDDVMDWAV-QGWNVLQRE--SWVWV-RGRWVPYPFQN--NI--HRLPEQDRKR  119 (484)
T ss_dssp             -------TSCEEES-SCCCBCCSBHHHHHHHHHHC-SCEEEEECC--CEEEE-TTEEEESSGGG--CG--GGSCHHHHHH
T ss_pred             -------CCcEEee-CCcccccChHHHHHHHHHHh-hhhhhccCc--eEEEE-CCEEEEeCccc--hh--hhCCHHHHHH
Confidence                   2455677 577665544 4555555543 333322221  23333 78888888421  11  1233333322


Q ss_pred             -HHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhH----HHHHHHHHhcCCCCcchhhhhhchhhH--
Q 014049          178 -LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKI----KSIVLYAIAMADYDQEVSEYVLKTRDG--  250 (431)
Q Consensus       178 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~s~~~~--  250 (431)
                       +..++..-..              .....+.++.+|+.+. +.+.+    ...+...+.    ..++  +++|+...  
T Consensus       120 ~~~~ll~~~~~--------------~~~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~----~~~~--~~ls~~~~~~  178 (484)
T 4dsg_A          120 CLDELVRSHAR--------------TYTEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVW----AVPP--CLMSTEWVEE  178 (484)
T ss_dssp             HHHHHHHHHHC--------------CCSSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHH----SSCG--GGBCSSSCTT
T ss_pred             HHHHHHHHHhc--------------cCCCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhc----CCCH--HHhcHHHHhc
Confidence             3333332111              0123457888888753 11111    111111111    1111  12233211  


Q ss_pred             ------HHH-HHHHHhhhc--cccCCCccEEeec-CCcchHHHHHHHHHHhcCcEEEeC--cceeEEEEecCCCcEEEEE
Q 014049          251 ------INR-LALYNSSIG--RFQNALGALIYPI-YGQGELPQAFCRRAAVKGCLYVLR--MPVISLLTDQNSGSYKGVR  318 (431)
Q Consensus       251 ------~~~-~~~~~~s~~--~~g~~~~~~~~p~-gG~~~l~~al~r~~~~~Gg~i~l~--~~V~~I~~~~~~g~~~gV~  318 (431)
                            +.. +...+....  .++ ..+.+.||. ||+++|+++|++.+..  .+|+++  ++|++|..+  ++   +|+
T Consensus       179 r~~~~~l~~~~~~~~~~~~~~~~~-~~~~f~yp~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~--~~---~v~  250 (484)
T 4dsg_A          179 RVAPVDLERIRRNIQENRDDLGWG-PNATFRFPQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD--AK---TIT  250 (484)
T ss_dssp             TSCCCCHHHHHHHHHHTCCCCCCS-TTSEEEEESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT--TT---EEE
T ss_pred             cccCCCHHHHHHHHhhcccccCCC-ccceEEeecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec--CC---EEE
Confidence                  111 111111110  011 112377876 8999999999875532  289999  569999875  55   355


Q ss_pred             eCCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCC-CCceEEEeCCCCCCCCC
Q 014049          319 LASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD-LSNFLVIFPPRSLFPEQ  396 (431)
Q Consensus       319 ~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~  396 (431)
                      +++|+++.||+||++ |...+.+++.+..++++.......+...+..+.+..+.++++...+ ...+.+.+|...     
T Consensus       251 ~~~G~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~~~~~l~~l~y~s~~~v~l~~~~~~~~~~~~~~~i~vp~~~-----  325 (484)
T 4dsg_A          251 FSNGEVVSYDYLISTVPFDNLLRMTKGTGFKGYDEWPAIADKMVYSSTNVIGIGVKGTPPPHLKTACWLYFPEDT-----  325 (484)
T ss_dssp             ETTSCEEECSEEEECSCHHHHHHHEECSSCTTGGGHHHHHHHCCEEEEEEEEEEEESCCCGGGTTCCEEECCSTT-----
T ss_pred             ECCCCEEECCEEEECCCHHHHHHHhhccCCCCCHHHHHHHhCCCcCceEEEEEEEcCCCcccCCCCeEEEEEcCC-----
Confidence            689999999999975 4433233331111123332222222334556666666677764322 345667777653     


Q ss_pred             CCeEEEEEecC-CCccCCCCcEEEEEEcC
Q 014049          397 VTSIRVLQLGG-NLAVCPLGMVSLDLLSP  424 (431)
Q Consensus       397 ~~~i~v~~~~~-~~~~aP~G~~~~~i~~~  424 (431)
                      .+...+..++. ++..||+|+.++++-..
T Consensus       326 ~~~~ri~~~s~~~p~~ap~g~~~l~~e~~  354 (484)
T 4dsg_A          326 SPFYRATVFSNYSKYNVPEGHWSLMLEVS  354 (484)
T ss_dssp             CSCSEEECGGGTCGGGSCTTEEEEEEEEE
T ss_pred             CeEEEEEeecCCCcccCCCCeEEEEEEEe
Confidence            23455666674 77899999988866543

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.86  E-value=2.3e-21  Score=197.40  Aligned_cols=278  Identities=15%  Similarity=0.149  Sum_probs=154.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      +..+||||||||++||+||..|+++| ++|+|||+++++||+++|++..                               
T Consensus         6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~-------------------------------   54 (516)
T 1rsg_A            6 PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGY-------------------------------   54 (516)
T ss_dssp             CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECG-------------------------------
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecC-------------------------------
Confidence            45689999999999999999999999 9999999999999999997531                               


Q ss_pred             ccccCCCCceeeecCCCeEEeeC--chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCCh-HHH
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL-MEK  175 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~--~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~-~~k  175 (431)
                             .++.+|+ |++++...  ..+.+++.+.++....      ..+.+. ++....++.+...+........ .-.
T Consensus        55 -------~G~~~D~-G~~~~~~~~~~~~~~~~~~lg~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (516)
T 1rsg_A           55 -------QGRKYDI-GASWHHDTLTNPLFLEEAQLSLNDGR------TRFVFD-DDNFIYIDEERGRVDHDKELLLEIVD  119 (516)
T ss_dssp             -------GGCEEES-SCCEECCTTTCHHHHHHHHHHHHHCC------CCEECC-CCCCEEEETTTEECTTCTTTCHHHHH
T ss_pred             -------CCcEEec-CCeEEecCCCChHHHHHHHhCCCCcc------eeEEEC-CCCEEEEcCCCccccccHHHHHHHHH
Confidence                   1355788 68887542  3566665555542110      011111 2332222221111100000000 001


Q ss_pred             HHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhcCC--CCcchhhhhhch
Q 014049          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMAD--YDQEVSEYVLKT  247 (431)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~~~~~l~~~~~~~~~~~~--~~~~~~~~~~s~  247 (431)
                      ..+.++....   ...          .....+.++.+|++++      .+.+....++...+....  +..+.  ..++.
T Consensus       120 ~~~~~~~~~~---~~~----------~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~--~~~s~  184 (516)
T 1rsg_A          120 NEMSKFAELE---FHQ----------HLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDW--KLLSA  184 (516)
T ss_dssp             HHHHHHHHHH---C-----------------CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCT--TTSBH
T ss_pred             HHHHHHHHHH---hhh----------ccCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCCh--HHCCh
Confidence            1222222211   100          0112356777776542      122221221111110000  00000  11222


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEe
Q 014049          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS  327 (431)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~A  327 (431)
                      ..       .+.  ...+    ...+++| ++.|+++|++.+.  +++|++|++|++|..+  ++..+.|++.+|++++|
T Consensus       185 ~~-------~~~--~~~~----~~~~~~g-~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~~v~v~~~~g~~~~a  246 (516)
T 1rsg_A          185 KD-------TYF--GHQG----RNAFALN-YDSVVQRIAQSFP--QNWLKLSCEVKSITRE--PSKNVTVNCEDGTVYNA  246 (516)
T ss_dssp             HH-------HCC--CCSS----CCEEESC-HHHHHHHHHTTSC--GGGEETTCCEEEEEEC--TTSCEEEEETTSCEEEE
T ss_pred             HH-------HHh--hccC----cchhhhC-HHHHHHHHHHhCC--CCEEEECCEEEEEEEc--CCCeEEEEECCCcEEEC
Confidence            11       010  1111    1357777 9999888865432  3689999999999875  34446888899999999


Q ss_pred             CEEEEC-CCCCCCCC---------CCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          328 HKLVLD-PSFTVPGS---------LASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       328 d~VI~~-p~~~~~~l---------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      |+||++ |...+...         ...+.|+||..+....+...++.+.|.++.++++|
T Consensus       247 d~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~f  305 (516)
T 1rsg_A          247 DYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECC  305 (516)
T ss_dssp             EEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCC
T ss_pred             CEEEECCCHHHhhhccccccccccceEecCCCCHHHHHHHHhCCCCcceEEEEEeCCCC
Confidence            999975 43332210         12456778877666656667888999999999886

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.83  E-value=1.1e-19  Score=182.99  Aligned_cols=286  Identities=11%  Similarity=0.081  Sum_probs=156.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      ..+||+|||||++||++|..|+++|+ +|+|+|+++++||++++....                                
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~--------------------------------   50 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA--------------------------------   50 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEET--------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccC--------------------------------
Confidence            45899999999999999999999999 899999999999999997542                                


Q ss_pred             cccCCCCceeeecCCCeEEee-----CchHHHHHHh-cCcccccc-cccccceeeeccCCceeecCCChhhhhccCCCCh
Q 014049          100 LLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLK-SGASHYLE-FKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL  172 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~-----~~~~~~~l~~-~~~~~~~~-f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~  172 (431)
                             ++.+|+ |++++..     ...+.+++.+ .|+..+.. +... ..+.+..+|+.++.+.. ...+.      
T Consensus        51 -------~~~~d~-g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~~~------  114 (472)
T 1b37_A           51 -------GINVEL-GANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYL-AQNVYKEDGGVYDEDYV-QKRIE------  114 (472)
T ss_dssp             -------TEEEES-SCCEEEEESSSSCCTHHHHHHTTSCCCEEECCCTTG-GGCEECSSSSBCCHHHH-HHHHH------
T ss_pred             -------CcEEee-CCeEEeccCCCCCCHHHHHHHhhcCCceeeccCccc-cceeEcCCCCCCCHHHH-HHHHH------
Confidence                   345677 6887752     2357788888 78765421 2111 11223335544322110 00000      


Q ss_pred             HHHHHHHHHHHHHHcccCCCccccccccccccccCCcHHH--HHHhcC---CChhHHHHHHHHHhcCCCCcchhhhhhch
Q 014049          173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAE--FLTKMK---LPHKIKSIVLYAIAMADYDQEVSEYVLKT  247 (431)
Q Consensus       173 ~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~l~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~s~  247 (431)
                       ....+.+|.+.+......           .++.+.++.+  ++.+..   ....+..++.....-..+..+.  ..++.
T Consensus       115 -~~~~~~~~~~~~~~~~~~-----------~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~  180 (472)
T 1b37_A          115 -LADSVEEMGEKLSATLHA-----------SGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPP--RVTSL  180 (472)
T ss_dssp             -HHHHHHHHHHHHHHTSCT-----------TCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCG--GGBBS
T ss_pred             -HHHHHHHHHHHHHHhhcc-----------ccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccc--cccch
Confidence             001122222222111100           1122344432  444322   1111222222111000001111  11222


Q ss_pred             hhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhc--------CcEEEeCcceeEEEEecCCCcEEEEEe
Q 014049          248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVK--------GCLYVLRMPVISLLTDQNSGSYKGVRL  319 (431)
Q Consensus       248 ~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~--------Gg~i~l~~~V~~I~~~~~~g~~~gV~~  319 (431)
                      ...+. ...+.    .++.. .-+.+++||++.|+++|++.+...        |++|+++++|++|..+  ++++ .|++
T Consensus       181 ~~~~~-~~~~~----~~~~~-~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~--~~~v-~v~~  251 (472)
T 1b37_A          181 QNTVP-LATFS----DFGDD-VYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS--PGGV-TVKT  251 (472)
T ss_dssp             TTTSS-CHHHH----HHCSE-EEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC--SSCE-EEEE
T ss_pred             hhccc-ccccc----ccCCc-eeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc--CCcE-EEEE
Confidence            11100 00111    11210 113345899999999998866544        7899999999999886  5554 5888


Q ss_pred             CCCcEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC
Q 014049          320 ASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (431)
Q Consensus       320 ~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  377 (431)
                      .+|++++||+||++ |...+..++..++|+||+.+....+...++.+.|..+.+++++-
T Consensus       252 ~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w  310 (472)
T 1b37_A          252 EDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFW  310 (472)
T ss_dssp             TTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCS
T ss_pred             CCCCEEEcCEEEEecCHHHhccCCeeECCCCCHHHHHHHHhcCCcceeEEEEECCCcCC
Confidence            89999999999975 44333343333566677654443333346677788888888763

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.83  E-value=3.3e-19  Score=176.97  Aligned_cols=245  Identities=15%  Similarity=0.167  Sum_probs=139.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      ..+||||||||++||+||.+|+++| ++|+|||+++++||+++|++.+                                
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~--------------------------------   52 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYH--------------------------------   52 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEET--------------------------------
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCC--------------------------------
Confidence            4589999999999999999999999 9999999999999999997643                                


Q ss_pred             cccCCCCceeeecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049          100 LLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus       100 ~~~~~~~~~~~dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                             ++.+|. |++++... ..+.+++.+.|+...  .......+.+ .+|+.. .|..  +...    .+.....+
T Consensus        53 -------G~~~d~-G~~~~~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~-~~g~~~-~~~~--~~~~----~~~~~~~~  114 (424)
T 2b9w_A           53 -------GRRYEM-GAIMGVPSYDTIQEIMDRTGDKVD--GPKLRREFLH-EDGEIY-VPEK--DPVR----GPQVMAAV  114 (424)
T ss_dssp             -------TEECCS-SCCCBCTTCHHHHHHHHHHCCCCC--SCCCCEEEEC-TTSCEE-CGGG--CTTH----HHHHHHHH
T ss_pred             -------Cccccc-CceeecCCcHHHHHHHHHhCCccc--cccccceeEc-CCCCEe-cccc--Cccc----chhHHHHH
Confidence                   244566 57665433 356777887776421  1111122222 355543 2211  0000    00011122


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      .++...+......... ........+....|+.+|+++.+.+. +.+.+...+....+. ++  .++++...+    .|+
T Consensus       115 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~--~~~~a~~~~----~~~  185 (424)
T 2b9w_A          115 QKLGQLLATKYQGYDA-NGHYNKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYG-HF--DNVPAAYVL----KYL  185 (424)
T ss_dssp             HHHHHHHHTTTTTTTS-SSSSSCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCC-CT--TTSBHHHHH----HHS
T ss_pred             HHHHHHHhhhhhhccc-ccchhhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccC-Ch--HhcCHHHHH----Hhh
Confidence            2333322221111000 00000112345689999999887764 444332111111121 11  223443322    222


Q ss_pred             hhhc--cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          259 SSIG--RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       259 ~s~~--~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ...+  .+..  +..+++.+|+++++++|.+   ..+.+|+++++|++|..+  ++++ .|++.+|+ ++||+||++
T Consensus       186 ~~~~~~~~~~--~~~~~~~~g~~~l~~~l~~---~l~~~v~~~~~V~~i~~~--~~~v-~v~~~~g~-~~ad~Vv~a  253 (424)
T 2b9w_A          186 DFVTMMSFAK--GDLWTWADGTQAMFEHLNA---TLEHPAERNVDITRITRE--DGKV-HIHTTDWD-RESDVLVLT  253 (424)
T ss_dssp             CHHHHHHHHH--TCCBCCTTCHHHHHHHHHH---HSSSCCBCSCCEEEEECC--TTCE-EEEESSCE-EEESEEEEC
T ss_pred             hHhhhhcccC--CceEEeCChHHHHHHHHHH---hhcceEEcCCEEEEEEEE--CCEE-EEEECCCe-EEcCEEEEC
Confidence            1100  0100  1245789999999998864   456789999999999876  5554 58877775 999999975

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.82  E-value=4.7e-19  Score=176.20  Aligned_cols=289  Identities=15%  Similarity=0.105  Sum_probs=161.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      +||||||||++||+||..|+++|++|+|||+++++||++.+.+..-                                  
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~c----------------------------------   47 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN----------------------------------   47 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSS----------------------------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccC----------------------------------
Confidence            7999999999999999999999999999999999999999865320                                  


Q ss_pred             CCCCceeeecCCCeEEee--CchHHHHHHhcCcccccccccccceeee-ccCCceeec-CCChhhhhccCCCChHHHHHH
Q 014049          103 QHPRNFNLDVSGPRVLFC--ADHAVDLMLKSGASHYLEFKSIDATFML-DADAKLCSV-PDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~--~~~~~~~l~~~~~~~~~~f~~~~~~~~~-~~~g~~~~~-p~~~~~~~~~~~l~~~~k~~l  178 (431)
                        ..++.+++ |++++..  ...+.+.+.+.|+........  ....+ ..+++.... |... ...      ..-+..+
T Consensus        48 --ipg~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~  115 (431)
T 3k7m_X           48 --VPGLRVEI-GGAYLHRKHHPRLAAELDRYGIPTAAASEF--TSFRHRLGPTAVDQAFPIPG-SEA------VAVEAAT  115 (431)
T ss_dssp             --STTCEEES-SCCCBCTTTCHHHHHHHHHHTCCEEECCCC--CEECCBSCTTCCSSSSCCCG-GGH------HHHHHHH
T ss_pred             --CCCceEec-CCeeeCCCCcHHHHHHHHHhCCeeeecCCC--CcEEEEecCCeecCCCCCCH-HHH------HHHHHHH
Confidence              01334566 4665533  335666777777643221111  11111 112221111 1110 000      0012223


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      .+++..........+...   ....+. +.++.+|+++.+.++..+.++...+... +..+.  .+++....+..+...-
T Consensus       116 ~~l~~~~~~~~~~~~~~~---~~~~~~-d~s~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~s~~~~~~~~~~~~  188 (431)
T 3k7m_X          116 YTLLRDAHRIDLEKGLEN---QDLEDL-DIPLNEYVDKLDLPPVSRQFLLAWAWNM-LGQPA--DQASALWMLQLVAAHH  188 (431)
T ss_dssp             HHHHHHHTTCCTTTCTTS---SSCGGG-CSBHHHHHHHHTCCHHHHHHHHHHHHHH-HSSCT--TTSBHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCCccC---cchhhh-cCCHHHHHHhcCCCHHHHHHHHHHHHHh-cCCCh--hhhhHHHHHHHHHhcC
Confidence            334443333211111000   011223 3899999999888877666543211100 11111  1234433322221110


Q ss_pred             hhhc--cccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CC
Q 014049          259 SSIG--RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PS  335 (431)
Q Consensus       259 ~s~~--~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~  335 (431)
                      ..+.  ...   ... ++.+|++.+++++.   +..| +|+++++|++|..+  ++. +.|++.+|++++||+||++ |.
T Consensus       189 ~~~~~~~~~---~~~-~~~~g~~~l~~~~~---~~~g-~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~~ad~vi~a~~~  257 (431)
T 3k7m_X          189 YSILGVVLS---LDE-VFSNGSADLVDAMS---QEIP-EIRLQTVVTGIDQS--GDV-VNVTVKDGHAFQAHSVIVATPM  257 (431)
T ss_dssp             SCHHHHHHT---CCE-EETTCTHHHHHHHH---TTCS-CEESSCCEEEEECS--SSS-EEEEETTSCCEEEEEEEECSCG
T ss_pred             Cccceeecc---hhh-hcCCcHHHHHHHHH---hhCC-ceEeCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecCc
Confidence            0000  011   113 78999999988765   4567 99999999999875  444 4588888988999999965 44


Q ss_pred             CCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC
Q 014049          336 FTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (431)
Q Consensus       336 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  377 (431)
                      ..+..+  .+.|+||..+....+...++...+..+.++++++
T Consensus       258 ~~l~~i--~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~  297 (431)
T 3k7m_X          258 NTWRRI--VFTPALPERRRSVIEEGHGGQGLKILIHVRGAEA  297 (431)
T ss_dssp             GGGGGS--EEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCT
T ss_pred             chHhhe--eeCCCCCHHHHHHHHhCCCcceEEEEEEECCCCc
Confidence            443442  2456666544433333456667888877888874

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.81  E-value=2e-19  Score=182.32  Aligned_cols=283  Identities=12%  Similarity=0.085  Sum_probs=159.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      ..+||+|||||++||+||..|+++|++|+|||+++++||++.++...                                 
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~---------------------------------   78 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNE---------------------------------   78 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEET---------------------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccC---------------------------------
Confidence            45799999999999999999999999999999999999999886521                                 


Q ss_pred             ccCCCCceeeecCCCeEEeeCc-hHHHHHHhcCccccccccccc-ceeeeccCCceeecC---CChhhhhccCCCChHHH
Q 014049          101 LSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSID-ATFMLDADAKLCSVP---DSRAAIFKDKSLGLMEK  175 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~-~~~~~~~~g~~~~~p---~~~~~~~~~~~l~~~~k  175 (431)
                          ..++.+|+ |++++.... .+.+++.+.|+... .+...+ ..+.+. +|.....+   ... ..+.. .+.+.++
T Consensus        79 ----~~~~~~~~-g~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~~-~~~~~-~~~~~~~  149 (498)
T 2iid_A           79 ----EAGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDP-GLLKY-PVKPSEA  149 (498)
T ss_dssp             ----TTTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCG-GGGCC-CCCGGGT
T ss_pred             ----CCCchhhc-CcccccchHHHHHHHHHHhCCCce-eecccCCccEEEe-CCeeecccccccCc-ccccc-CCCcccc
Confidence                12345566 576654433 45666777776421 221111 112111 33322111   000 01110 1111110


Q ss_pred             ---------HHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcC-CChhHHHHHHHHHhcC-CCCcchhhhh
Q 014049          176 ---------NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LPHKIKSIVLYAIAMA-DYDQEVSEYV  244 (431)
Q Consensus       176 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~l~~~~~~~~~~~-~~~~~~~~~~  244 (431)
                               ..+.+++..+....        .......+...++.+|+++.+ +++..+..+...+... .+.       
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------  214 (498)
T 2iid_A          150 GKSAGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYY-------  214 (498)
T ss_dssp             TCCHHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGGGTT-------
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcc--------HHHHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcccchh-------
Confidence                     01112222111110        000112345578999999866 5555544433221100 000       


Q ss_pred             hchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-
Q 014049          245 LKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-  323 (431)
Q Consensus       245 ~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-  323 (431)
                      .+....+....    ... .+   ..++++.||+++|+++|++.+.   .+|+++++|++|..+  +++ +.|++.+|+ 
T Consensus       215 ~~~~~~~~~~~----~~~-~~---~~~~~~~gG~~~l~~~l~~~l~---~~i~~~~~V~~I~~~--~~~-v~v~~~~~~~  280 (498)
T 2iid_A          215 VSFIESLKHDD----IFA-YE---KRFDEIVDGMDKLPTAMYRDIQ---DKVHFNAQVIKIQQN--DQK-VTVVYETLSK  280 (498)
T ss_dssp             SBHHHHHHHHH----HHT-TC---CCEEEETTCTTHHHHHHHHHTG---GGEESSCEEEEEEEC--SSC-EEEEEECSSS
T ss_pred             HHHHHHHHHHh----ccc-cC---cceEEeCCcHHHHHHHHHHhcc---cccccCCEEEEEEEC--CCe-EEEEEecCCc
Confidence            01111111111    111 11   1267899999999999987543   489999999999986  444 467766665 


Q ss_pred             ---EEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          324 ---DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       324 ---~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                         +++||+||++ |...+..+  .++|+||..+....+...++.+.|..+.+++++
T Consensus       281 ~~~~~~ad~vI~t~p~~~~~~i--~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~~  335 (498)
T 2iid_A          281 ETPSVTADYVIVCTTSRAVRLI--KFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKF  335 (498)
T ss_dssp             CCCEEEESEEEECSCHHHHTTS--EEESCCCHHHHHHHHHCCEECEEEEEEEESSCG
T ss_pred             ccceEEeCEEEECCChHHHhhe--ecCCCCCHHHHHHHHhCCCcceeEEEEEeCCCC
Confidence               5899999975 44433443  245667766554434455777888888898875

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.80  E-value=8.2e-19  Score=177.41  Aligned_cols=302  Identities=14%  Similarity=0.109  Sum_probs=153.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      ..+||+|||||++||+||..|+++|++|+|||+++++||++++.....  .+....+.                    ..
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~--~~~~~~~~--------------------~~   67 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS--EETDLSGE--------------------TQ   67 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC--EEECTTSC--------------------EE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc--ccccccch--------------------hh
Confidence            467999999999999999999999999999999999999999876431  01100000                    00


Q ss_pred             ccCCCCceeeecCCCeEEeeCchHHHHHHhcCccccccccccc-ceeee-ccC----CceeecCCChhhhhccCCCChHH
Q 014049          101 LSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSID-ATFML-DAD----AKLCSVPDSRAAIFKDKSLGLME  174 (431)
Q Consensus       101 ~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~-~~~~~-~~~----g~~~~~p~~~~~~~~~~~l~~~~  174 (431)
                      ......++.+|. |+..+.....+.+++.+.|+... .+.... ..+++ ..+    |+...++....+.          
T Consensus        68 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------  135 (489)
T 2jae_A           68 KCTFSEGHFYNV-GATRIPQSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKADT----------  135 (489)
T ss_dssp             ECCCCTTCEEES-SCCCEETTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHHH----------
T ss_pred             hhcccCCCcCCc-chhhcccHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhhh----------
Confidence            001123455677 57766554578888888887421 121111 12333 211    4333322110000          


Q ss_pred             HHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChh--------HHHHHHHHHhcCCCCcchhhhhhc
Q 014049          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK--------IKSIVLYAIAMADYDQEVSEYVLK  246 (431)
Q Consensus       175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~s  246 (431)
                      ...+..++..........       +...+..+.++.+|+++++....        +..++...-...........  ..
T Consensus       136 ~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  206 (489)
T 2jae_A          136 FGYMSELLKKATDQGALD-------QVLSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKP--FA  206 (489)
T ss_dssp             HHHHHHHHHHHHHHTTTT-------TTSCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCC--CC
T ss_pred             hccHHHHHHHHHhccccc-------cccchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCC--cC
Confidence            000111111111100000       00001122467777765321100        00000000000000000000  00


Q ss_pred             hhhHHH-HHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCCC--
Q 014049          247 TRDGIN-RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASG--  322 (431)
Q Consensus       247 ~~~~~~-~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~G--  322 (431)
                      ...... .+..++........ ...+++++||++.|+++|++.+   + ++|+++++|++|..+  ++++ .|++.+|  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gG~~~l~~~l~~~l---~~~~i~~~~~V~~i~~~--~~~v-~v~~~~g~~  279 (489)
T 2jae_A          207 MQEVIRSGIGRNFSFDFGYDQ-AMMMFTPVGGMDRIYYAFQDRI---GTDNIVFGAEVTSMKNV--SEGV-TVEYTAGGS  279 (489)
T ss_dssp             HHHHHHHTTTTTGGGGGCTTT-SSSEEEETTCTTHHHHHHHHHH---CGGGEETTCEEEEEEEE--TTEE-EEEEEETTE
T ss_pred             HHHHhhhhHHHHHhhhhcccc-CccEEeecCCHHHHHHHHHHhc---CCCeEEECCEEEEEEEc--CCeE-EEEEecCCe
Confidence            000000 01111111101111 1237789999999999998754   4 789999999999987  5554 4776676  


Q ss_pred             -cEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          323 -QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       323 -~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                       ++++||+||++ |...+..+..    ++|..+....+...+..+.+..+.+++++
T Consensus       280 ~~~~~ad~vI~a~p~~~l~~l~~----~l~~~~~~~l~~~~~~~~~kv~l~~~~~~  331 (489)
T 2jae_A          280 KKSITADYAICTIPPHLVGRLQN----NLPGDVLTALKAAKPSSSGKLGIEYSRRW  331 (489)
T ss_dssp             EEEEEESEEEECSCHHHHTTSEE----CCCHHHHHHHHTEECCCEEEEEEEESSCH
T ss_pred             EEEEECCEEEECCCHHHHHhCcc----CCCHHHHHHHHhCCCccceEEEEEeCCCC
Confidence             67999999975 4444455432    34433333223344677888888888874

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.72  E-value=1.9e-16  Score=153.23  Aligned_cols=47  Identities=17%  Similarity=0.340  Sum_probs=43.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCcccccCh
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSSLSI   66 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~~~t~~~   66 (431)
                      ...+||+|||||++||+||+.|+++|++|+|||++ +++||++.++..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~   89 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHA   89 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecc
Confidence            35689999999999999999999999999999999 999999998763

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.70  E-value=4.6e-18  Score=167.27  Aligned_cols=298  Identities=12%  Similarity=0.093  Sum_probs=157.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR   99 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (431)
                      .++||+|||||++||+||.+|+++ |++|+|||+++++||++++.....                               
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~-------------------------------   54 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ-------------------------------   54 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT-------------------------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC-------------------------------
Confidence            468999999999999999999999 999999999999999999975410                               


Q ss_pred             cccCCCCceeee-cCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChh---hhhccCCCChHH
Q 014049          100 LLSQHPRNFNLD-VSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRA---AIFKDKSLGLME  174 (431)
Q Consensus       100 ~~~~~~~~~~~d-l~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~---~~~~~~~l~~~~  174 (431)
                            .++.+| . |++++... ..+.+++.+.++.  ..+..  ..+++ .+|+.+++|.+..   .++.. .+++.+
T Consensus        55 ------~g~~~~~~-G~~~~~~~~~~~~~~~~~~g~~--~~~~~--~~~~~-~~G~~~~~p~~~~~~~~l~~~-~~~~~~  121 (399)
T 1v0j_A           55 ------TGIEVHKY-GAHLFHTSNKRVWDYVRQFTDF--TDYRH--RVFAM-HNGQAYQFPMGLGLVSQFFGK-YFTPEQ  121 (399)
T ss_dssp             ------TCCEEETT-SCCCEEESCHHHHHHHTTTCCB--CCCCC--CEEEE-ETTEEEEESSSHHHHHHHHTS-CCCHHH
T ss_pred             ------CCEEEEeC-CCcEEcCCcHHHHHHHHHhhhh--hcccc--ceEEE-ECCEEEeCCCCHHHHHHHhcc-cCCHHH
Confidence                  134454 4 67766543 3677777777752  12211  12233 3788888887642   22221 123322


Q ss_pred             HHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHH-HHHH-HHHhcCCCCcchhhhhhchhhHHH
Q 014049          175 KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIK-SIVL-YAIAMADYDQEVSEYVLKTRDGIN  252 (431)
Q Consensus       175 k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~  252 (431)
                      .   .+++.......             ......++.+|+.+. ..+.+. .++. +....+  ..++  .++++... .
T Consensus       122 ~---~~~l~~~~~~~-------------~~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~--~~~~--~~ls~~~~-~  179 (399)
T 1v0j_A          122 A---RQLIAEQAAEI-------------DTADAQNLEEKAISL-IGRPLYEAFVKGYTAKQW--QTDP--KELPAANI-T  179 (399)
T ss_dssp             H---HHHHHHHGGGS-------------CTTC----CCHHHHH-HCHHHHHHHTHHHHHHHH--TSCG--GGSCGGGC-S
T ss_pred             H---HHHHHHHhhcc-------------CCCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhc--CCCh--hhcChHhh-h
Confidence            2   22222211110             012345777777752 233232 3222 111121  1222  23444321 0


Q ss_pred             HHHHHHhhhccccCCCccEE-eecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEE-EeCEE
Q 014049          253 RLALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI-LSHKL  330 (431)
Q Consensus       253 ~~~~~~~s~~~~g~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i-~Ad~V  330 (431)
                      ++.........+..  ..+. +|+||+++|+++|++   .+|++|++|++|++|..   .     |  .   ++ .||+|
T Consensus       180 ~~~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~I~~---~-----v--~---~~~~aD~V  241 (399)
T 1v0j_A          180 RLPVRYTFDNRYFS--DTYEGLPTDGYTAWLQNMAA---DHRIEVRLNTDWFDVRG---Q-----L--R---PGSPAAPV  241 (399)
T ss_dssp             CCCCCSSSCCCSCC--CSEEECBTTHHHHHHHHHTC---STTEEEECSCCHHHHHH---H-----H--T---TTSTTCCE
T ss_pred             cceeEeccccchhh--hhhcccccccHHHHHHHHHh---cCCeEEEECCchhhhhh---h-----h--h---hcccCCEE
Confidence            00000000011111  1243 999999999998875   57899999999999842   1     2  1   35 69999


Q ss_pred             EEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCCCCCCceEEEeCCCCCCCCCCCeEEEEEecC-C
Q 014049          331 VLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGG-N  408 (431)
Q Consensus       331 I~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~-~  408 (431)
                      |++ |...+.++.             + ....+.++....+.++.+..  .....+.+|....+   ..  .+..++. .
T Consensus       242 I~t~p~~~l~~~~-------------l-~~l~y~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~--ri~~~~~~~  300 (399)
T 1v0j_A          242 VYTGPLDRYFDYA-------------E-GRLGWRTLDFEVEVLPIGDF--QGTAVMNYNDLDVP---YT--RIHEFRHFH  300 (399)
T ss_dssp             EECSCHHHHTTTT-------------T-CCCCEEEEEEEEEEESSSCS--SSSSEEEECCTTSS---CS--EEEEGGGGC
T ss_pred             EECCcHHHHHhhh-------------h-CCCCcceEEEEEEEEccccC--CCCeEEEeCCCCCC---cc--eeEeecCCC
Confidence            975 332222221             0 11123333344444566532  12345666643222   12  2344443 4


Q ss_pred             CccC-CCCcEEEEEEc
Q 014049          409 LAVC-PLGMVSLDLLS  423 (431)
Q Consensus       409 ~~~a-P~G~~~~~i~~  423 (431)
                      +..+ |+++.++.+-.
T Consensus       301 ~~~~~~~~~~~v~~e~  316 (399)
T 1v0j_A          301 PERDYPTDKTVIMREY  316 (399)
T ss_dssp             TTSCCCSSCEEEEEEE
T ss_pred             CCCcCCCCCeEEEEee
Confidence            5666 77777776653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.68  E-value=2.5e-17  Score=160.20  Aligned_cols=224  Identities=13%  Similarity=0.171  Sum_probs=128.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      ++||+|||||++||+||.+|+++|++|+|+|+++++||++.++..+                                  
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~----------------------------------   46 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCE----------------------------------   46 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEET----------------------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccC----------------------------------
Confidence            3799999999999999999999999999999999999999997532                                  


Q ss_pred             cCCCCceeee-cCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhcc-CCCChHHHHHH
Q 014049          102 SQHPRNFNLD-VSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQL  178 (431)
Q Consensus       102 ~~~~~~~~~d-l~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~-~~l~~~~k~~l  178 (431)
                           ++.+| . |++++.... .+.+++.+.+.  ...+...  .+.+ .+|+.+++|.+...+... ....+   ..+
T Consensus        47 -----g~~~~~~-G~~~~~~~~~~~~~~~~~l~~--~~~~~~~--~~~~-~~g~~~~~p~~~~~~~~l~~~~~~---~~~  112 (367)
T 1i8t_A           47 -----GIQIHKY-GAHIFHTNDKYIWDYVNDLVE--FNRFTNS--PLAI-YKDKLFNLPFNMNTFHQMWGVKDP---QEA  112 (367)
T ss_dssp             -----TEEEETT-SCCCEEESCHHHHHHHHTTSC--BCCCCCC--CEEE-ETTEEEESSBSHHHHHHHHCCCCH---HHH
T ss_pred             -----Cceeecc-CCceecCCCHHHHHHHHHhhh--hhhcccc--ceEE-ECCeEEEcCCCHHHHHHHhccCCH---HHH
Confidence                 24454 4 677765543 55666665553  1122211  1222 378888888764322110 11122   223


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHH--HHHhcCCCCcchhhhhhchhhHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGINRLAL  256 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~~~  256 (431)
                      .+++.......             ....+.++.+|+.+. ..+.+.+.+.  +....+  ..++  .++|+... .++..
T Consensus       113 ~~~l~~~~~~~-------------~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~--~~~~--~~lsa~~~-~~l~~  173 (367)
T 1i8t_A          113 QNIINAQKKKY-------------GDKVPENLEEQAISL-VGEDLYQALIKGYTEKQW--GRSA--KELPAFII-KRIPV  173 (367)
T ss_dssp             HHHHHHHTTTT-------------CCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHH--SSCG--GGSCTTSS-CCCCB
T ss_pred             HHHHHHHhhcc-------------CCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhh--CCCh--HHcCHHHH-hhcee
Confidence            34444332211             112457899998764 3333333221  111221  2222  23444321 00000


Q ss_pred             HHhhhccccCCCccEE-eecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          257 YNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       257 ~~~s~~~~g~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ....-..+.  .+.+. +|+||+++|+++|++     |++|++|++|++|.    . +   |      ++.||+||++
T Consensus       174 ~~~~~~~~~--~~~~~~~p~gG~~~l~~~l~~-----g~~i~l~~~V~~i~----~-~---v------~~~~D~VV~a  230 (367)
T 1i8t_A          174 RFTFDNNYF--SDRYQGIPVGGYTKLIEKMLE-----GVDVKLGIDFLKDK----D-S---L------ASKAHRIIYT  230 (367)
T ss_dssp             CSSSCCCSC--CCSEEECBTTCHHHHHHHHHT-----TSEEECSCCGGGSH----H-H---H------HTTEEEEEEC
T ss_pred             eeccccccc--cchhhcccCCCHHHHHHHHhc-----CCEEEeCCceeeec----h-h---h------hccCCEEEEe
Confidence            000000111  12343 999999999998875     68999999999884    1 1   2      1458999975

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.67  E-value=1.3e-15  Score=160.73  Aligned_cols=98  Identities=13%  Similarity=0.062  Sum_probs=72.0

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhh
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l  349 (431)
                      ...+.+|++.+.++|++     |.+|+++++|++|..+  +++ +.|++.+|++++||+||++ |...+......++|+|
T Consensus       526 ~~~~~~G~~~l~~aLa~-----gl~I~l~t~V~~I~~~--~~~-v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~L  597 (776)
T 4gut_A          526 HTLLTPGYSVIIEKLAE-----GLDIQLKSPVQCIDYS--GDE-VQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPL  597 (776)
T ss_dssp             EEECTTCTHHHHHHHHT-----TSCEESSCCEEEEECS--SSS-EEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCC
T ss_pred             eEEECChHHHHHHHHHh-----CCcEEcCCeeEEEEEc--CCE-EEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCC
Confidence            56788999999988764     6789999999999876  444 4688889999999999965 5443332222456777


Q ss_pred             hhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          350 QESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      |..+....+...++.+.|.++.++++|
T Consensus       598 p~~~~~ai~~l~~g~~~KV~l~f~~~F  624 (776)
T 4gut_A          598 SEKKMKAINSLGAGIIEKIALQFPYRF  624 (776)
T ss_dssp             CHHHHHHHHHEEEECCEEEEEECSSCT
T ss_pred             CHHHHHHHHhCCCeeEEEEEEecCccc
Confidence            775554444445677888898899886

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.66  E-value=2.6e-16  Score=153.48  Aligned_cols=225  Identities=14%  Similarity=0.221  Sum_probs=130.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC-hhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS-IADLTHFLNSHSTPSSVCPDPLYSDVEISNYA   97 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (431)
                      ....+||+|||||++||+||..|+++|++|+|+|+++++||++.+.. .+                              
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~------------------------------   75 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDA------------------------------   75 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTT------------------------------
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccC------------------------------
Confidence            34579999999999999999999999999999999999999999864 22                              


Q ss_pred             cccccCCCCceee-ecCCCeEEeeC-chHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhh--hccCCCChH
Q 014049           98 SRLLSQHPRNFNL-DVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAI--FKDKSLGLM  173 (431)
Q Consensus        98 ~~~~~~~~~~~~~-dl~Gp~~~~~~-~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~--~~~~~l~~~  173 (431)
                               ++.+ |. |++++... ..+.+++.+.+..  ..+  ....+.+. +|+++++|.+...+  +....+++.
T Consensus        76 ---------G~~~~~~-G~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~-~g~l~~lP~~~~~~~~l~~~~~~~~  140 (397)
T 3hdq_A           76 ---------GVLIHPY-GPHIFHTNSKDVFEYLSRFTEW--RPY--QHRVLASV-DGQLLPIPINLDTVNRLYGLNLTSF  140 (397)
T ss_dssp             ---------SCEECTT-SCCCCEESCHHHHHHHHTSCCE--EEC--CCBEEEEE-TTEEEEESCCHHHHHHHHTCCCCHH
T ss_pred             ---------CceEeec-CCcccCCChHHHHHHHHHhhhc--ccc--cccceEEE-CCEEEEcCCChHHHHHhhccCCCHH
Confidence                     2222 44 57766544 3567777776631  111  11223333 78999999875322  112223333


Q ss_pred             HHHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHhcCCCCcchhhhhhchhhHH
Q 014049          174 EKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGI  251 (431)
Q Consensus       174 ~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~  251 (431)
                      ..   ..++.. ..              .....+.++.+|+.+.- .+.+.+ ++. +....  |..++  +++|+.. +
T Consensus       141 ~~---~~~l~~-~~--------------~~~~~~~s~~e~~~~~~-G~~~~e~~~~py~~k~--~~~~~--~~Lsa~~-~  196 (397)
T 3hdq_A          141 QV---EEFFAS-VA--------------EKVEQVRTSEDVVVSKV-GRDLYNKFFRGYTRKQ--WGLDP--SELDASV-T  196 (397)
T ss_dssp             HH---HHHHHH-HC--------------CCCSSCCBHHHHHHHHH-HHHHHHHHTHHHHHHH--HSSCG--GGSBTTT-G
T ss_pred             HH---HHHHhh-cc--------------cCCCCCcCHHHHHHHhc-CHHHHHHHHHHHhCch--hCCCH--HHHHHHH-H
Confidence            22   233321 11              01234678999987521 122322 222 11122  22222  3455432 1


Q ss_pred             HHHHHHHhhhccccCCCccE-EeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEE
Q 014049          252 NRLALYNSSIGRFQNALGAL-IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKL  330 (431)
Q Consensus       252 ~~~~~~~~s~~~~g~~~~~~-~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~V  330 (431)
                      .++......-..+..  ..+ .+|+||.++|.++|+   +..|++|+||++|.++                ++++.||+|
T Consensus       197 ~Rvp~~~~~d~~yf~--~~~qg~P~gGy~~l~e~l~---~~~g~~V~l~~~v~~~----------------~~~~~~d~v  255 (397)
T 3hdq_A          197 ARVPTRTNRDNRYFA--DTYQAMPLHGYTRMFQNML---SSPNIKVMLNTDYREI----------------ADFIPFQHM  255 (397)
T ss_dssp             GGSCCCSSCCCBSCC--CSEEEEETTCHHHHHHHHT---CSTTEEEEESCCGGGT----------------TTTSCEEEE
T ss_pred             HhcCcccccCccchh--hhheeccCCCHHHHHHHHH---hccCCEEEECCeEEec----------------cccccCCEE
Confidence            111000000001111  124 379999999998774   4679999999999732                223568999


Q ss_pred             EEC
Q 014049          331 VLD  333 (431)
Q Consensus       331 I~~  333 (431)
                      |++
T Consensus       256 I~T  258 (397)
T 3hdq_A          256 IYT  258 (397)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            965

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.66  E-value=1e-16  Score=156.80  Aligned_cols=213  Identities=14%  Similarity=0.186  Sum_probs=123.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL  100 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (431)
                      +++||+|||||++||++|..|+++|++|+|+|+++++||++++.....                                
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~--------------------------------   49 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE--------------------------------   49 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT--------------------------------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC--------------------------------
Confidence            357999999999999999999999999999999999999999875421                                


Q ss_pred             ccCCCCceee-ecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhh---hccCCCChHHH
Q 014049          101 LSQHPRNFNL-DVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAI---FKDKSLGLMEK  175 (431)
Q Consensus       101 ~~~~~~~~~~-dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~---~~~~~l~~~~k  175 (431)
                           .++.+ |. |++++...+ .+.+++.+.+..  ..+.  ...+.+ .+|+.+++|.+...+   +.. .+++.+ 
T Consensus        50 -----~g~~~~~~-G~~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~~~-~~g~~~~~P~~~~~~~~l~~~-~~~~~~-  116 (384)
T 2bi7_A           50 -----TNVMVHVY-GPHIFHTDNETVWNYVNKHAEM--MPYV--NRVKAT-VNGQVFSLPINLHTINQFFSK-TCSPDE-  116 (384)
T ss_dssp             -----TCCEEETT-SCCCEEESCHHHHHHHHTTSCE--EECC--CCEEEE-ETTEEEEESCCHHHHHHHTTC-CCCHHH-
T ss_pred             -----CCceEeeC-CceEECCCCHHHHHHHHHHhhh--cccc--cceEEE-ECCEEEECCCChhHHHHHhcc-cCCHHH-
Confidence                 12333 45 687765443 677777776641  1111  112222 378888888765322   211 123322 


Q ss_pred             HHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHH--HHHhcCCCCcchhhhhhchhhHHHH
Q 014049          176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVL--YAIAMADYDQEVSEYVLKTRDGINR  253 (431)
Q Consensus       176 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~  253 (431)
                        +.+++......             . ...+.++.+|+.+. ..+.+.+.+.  +..+.  +..++  .+++.... .+
T Consensus       117 --~~~~l~~~~~~-------------~-~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~--~~~~~--~~ls~~~~-~r  174 (384)
T 2bi7_A          117 --ARALIAEKGDS-------------T-IADPQTFEEEALRF-IGKELYEAFFKGYTIKQ--WGMQP--SELPASIL-KR  174 (384)
T ss_dssp             --HHHHHHHHSCC-------------S-CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHH--HSSCG--GGSBGGGC-CS
T ss_pred             --HHHHHHHhhhc-------------c-CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHH--hCCCH--HHhCHHHH-hc
Confidence              22333322110             0 12467899999865 3344443222  11122  22222  23443321 00


Q ss_pred             HHHHHhhhccccCCCccEE-eecCCcchHHHHHHHHHHhcCcEEEeCccee-EE
Q 014049          254 LALYNSSIGRFQNALGALI-YPIYGQGELPQAFCRRAAVKGCLYVLRMPVI-SL  305 (431)
Q Consensus       254 ~~~~~~s~~~~g~~~~~~~-~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~-~I  305 (431)
                      +.........+..  +.+. +|+||+++|+++|++   ..|++|+++++|+ +|
T Consensus       175 ~~~~~~~~~~~~~--~~~~~~p~gG~~~l~~~l~~---~~g~~I~l~~~V~~~i  223 (384)
T 2bi7_A          175 LPVRFNYDDNYFN--HKFQGMPKCGYTQMIKSILN---HENIKVDLQREFIVEE  223 (384)
T ss_dssp             CCCCSSSCCCSCC--CSEEEEETTHHHHHHHHHHC---STTEEEEESCCCCGGG
T ss_pred             ccccccccccccc--ccccEEECcCHHHHHHHHHh---cCCCEEEECCeeehhh
Confidence            0000000011111  2243 999999999998865   5789999999999 77

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.62  E-value=6.5e-15  Score=156.35  Aligned_cols=99  Identities=11%  Similarity=-0.017  Sum_probs=72.0

Q ss_pred             cEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC------CcEEEeCEEEEC-CCCCCCCCC
Q 014049          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGSL  342 (431)
Q Consensus       270 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G~~i~Ad~VI~~-p~~~~~~l~  342 (431)
                      .++.++||++.|+++|++     +..|+||++|++|..+  ++. +.|++.+      |++++||+||++ |...+..+.
T Consensus       563 ~~~~~~gG~~~L~~aLa~-----~l~I~Lnt~V~~I~~~--~~g-V~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~  634 (852)
T 2xag_A          563 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  634 (852)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCCEECSEEEEEEEEE--TTE-EEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceEEecCcHHHHHHHHHh-----CCCEEeCCeEEEEEEc--CCc-EEEEEeecccCCCCeEEECCEEEECCCHHHHHhhh
Confidence            367899999999998875     3479999999999987  444 4566554      578999999986 544433321


Q ss_pred             --CCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          343 --ASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       343 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                        +.+.|+||..+....+...++.+.|.++.++++|
T Consensus       635 ~~I~F~P~LP~~k~~AI~~l~~g~v~KV~L~F~~~f  670 (852)
T 2xag_A          635 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVF  670 (852)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCC
T ss_pred             cccccCCCCCHHHHHHHHcCCccceEEEEEEcCCcc
Confidence              2356778775554444455788899999899886

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.62  E-value=9e-15  Score=152.80  Aligned_cols=100  Identities=11%  Similarity=-0.029  Sum_probs=73.0

Q ss_pred             cEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC------CcEEEeCEEEEC-CCCCCCCCC
Q 014049          270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------GQDILSHKLVLD-PSFTVPGSL  342 (431)
Q Consensus       270 ~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G~~i~Ad~VI~~-p~~~~~~l~  342 (431)
                      .++.++||++.|+++|++     +..|++|++|++|..+  ++. +.|++.+      |++++||+||++ |...+.++.
T Consensus       392 ~~~~~~gG~~~l~~~La~-----~l~I~l~~~V~~I~~~--~~~-v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~  463 (662)
T 2z3y_A          392 SHLTVRNGYSCVPVALAE-----GLDIKLNTAVRQVRYT--ASG-CEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQP  463 (662)
T ss_dssp             CCEEETTCTTHHHHHHTT-----TCEEETTEEEEEEEEE--TTE-EEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSS
T ss_pred             ceeeecCcHHHHHHHHHh-----cCceecCCeEEEEEEC--CCc-EEEEEeecccCCCCeEEEeCEEEECCCHHHHhccc
Confidence            356889999999998865     4589999999999987  444 4566555      578999999976 544433321


Q ss_pred             --CCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCCC
Q 014049          343 --ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK  377 (431)
Q Consensus       343 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~  377 (431)
                        ..+.|+||..+....+...++.+.|.++.++++|-
T Consensus       464 ~~i~f~P~LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW  500 (662)
T 2z3y_A          464 PAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW  500 (662)
T ss_dssp             CSSEEESCCCHHHHHHHHHSEECCCEEEEEECSSCCS
T ss_pred             CceEEcCCCCHHHHHHHHhCCccceeEEEEEcCcccc
Confidence              23577788765544444567888999999998863

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.61  E-value=3.3e-14  Score=136.73  Aligned_cols=100  Identities=10%  Similarity=-0.011  Sum_probs=72.5

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCCCCCCCCchhhh
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL  349 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~~~l~~~~~~~l  349 (431)
                      .+.+.+|++.+.++|++.   .|++|+++++|++|..+  +++ +.|++.+|++++||.||++ |.....+|+...++.|
T Consensus       104 ~~~~~~g~~~l~~~l~~~---~g~~i~~~~~V~~i~~~--~~~-~~v~~~~g~~~~ad~vV~A~p~~~~~~ll~~~~~~l  177 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKE---SGAEVYFRHRVTQINLR--DDK-WEVSKQTGSPEQFDLIVLTMPVPEILQLQGDITTLI  177 (342)
T ss_dssp             EEECTTCTTHHHHHHHHH---HTCEEESSCCEEEEEEC--SSS-EEEEESSSCCEEESEEEECSCHHHHTTCBSTHHHHS
T ss_pred             ceecCCCHHHHHHHHHHh---cCCEEEeCCEEEEEEEc--CCE-EEEEECCCCEEEcCEEEECCCHHHHHHHhccccccc
Confidence            346789999999988764   38999999999999886  444 4688888988999999964 5444456654344556


Q ss_pred             hhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          350 QESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      |+......+...+..+.+..+.+++++
T Consensus       178 ~~~~~~~l~~~~~~~~~~v~l~~~~~~  204 (342)
T 3qj4_A          178 SECQRQQLEAVSYSSRYALGLFYEAGT  204 (342)
T ss_dssp             CHHHHHHHHTCCBCCEEEEEEECSSCC
T ss_pred             CHHHHHHHhcCCccccEEEEEEECCCC
Confidence            554443334456778888888888764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.60  E-value=2.1e-15  Score=156.03  Aligned_cols=104  Identities=9%  Similarity=-0.023  Sum_probs=70.3

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCccee--EEEEecCCC-----cEEEE-EeCCCc--EEEeCEEEEC-CCCCC-
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI--SLLTDQNSG-----SYKGV-RLASGQ--DILSHKLVLD-PSFTV-  338 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~--~I~~~~~~g-----~~~gV-~~~~G~--~i~Ad~VI~~-p~~~~-  338 (431)
                      ++++.||+++|+++|.+.+.. |+.|+++++|+  +|..+. ++     ..+.| ...+|+  +++||+||++ |...+ 
T Consensus       339 ~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~-~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP~~~L~  416 (721)
T 3ayj_A          339 YTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANAC-HSGTASARAQLLSYDSHNAVHSEAYDFVILAVPHDQLT  416 (721)
T ss_dssp             ECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEE-ECSSSSCCEEEEEEETTCCEEEEEESEEEECSCHHHHH
T ss_pred             eeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECC-CCCccccceEEEEEecCCceEEEEcCEEEECCCHHHHh
Confidence            678999999999999886532 78899999999  998863 33     13456 446777  7999999985 43222 


Q ss_pred             -----CCCC-------C---------Cc---hhh-h-h-------hhhhhhcccCCCCeEEEEEEEe-----CCCC
Q 014049          339 -----PGSL-------A---------SS---HQQ-L-Q-------ESFQAFSLSDNKGKVARGICIT-----RSSL  376 (431)
Q Consensus       339 -----~~l~-------~---------~~---~~~-l-~-------~~~~~~~~~~~~~~~~~~~~i~-----~~~~  376 (431)
                           ..+.       .         ++   .++ | |       ..+....++..++..+|..+.+     +++|
T Consensus       417 ~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~pplLlp~~~~~~~~~~~~Ai~~l~~~~s~Kv~l~~~~~~~~~~f  492 (721)
T 3ayj_A          417 PIVSRSGFEHAASQNLGDAGLGLETHTYNQVYPPLLLSDSSPAANARIVTAIGQLHMARSSKVFATVKTAALDQPW  492 (721)
T ss_dssp             HHHSSSCSSCEEEEEESCGGGTCCCEEEEEEBCSSCCCSSCHHHHHHHHHHHHTCCEECEEEEEEEEEGGGGGSTT
T ss_pred             hccccccccccccccccccccccccccccccCCcccCCcccccccHHHHHHHHhcCcccceEEEEEEccccCCCCc
Confidence                 1111       0         00   222 3 4       4444444556788889999999     7886

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.36  E-value=5.3e-12  Score=122.03  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=48.4

Q ss_pred             EEeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC--cEEEeCEEEEC
Q 014049          271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~~  333 (431)
                      .+.+..|   ...+.++|.+.+++.|++|+++++|++|..+  ++..+.|++.+|  ++++||.||..
T Consensus       139 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~a~~VV~A  204 (369)
T 3dme_A          139 LVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVR--PEGGFELDFGGAEPMTLSCRVLINA  204 (369)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSSEEEEECTTSCEEEEEEEEEEC
T ss_pred             eECCCCEEECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCceEEEEECCCceeEEEeCEEEEC
Confidence            3445554   3578899999999999999999999999986  444456888888  48999999954

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.34  E-value=2.2e-11  Score=120.93  Aligned_cols=61  Identities=21%  Similarity=0.202  Sum_probs=52.2

Q ss_pred             EEeecC-C---cchHHHHHHHHHHhcCcEEEeCc---ceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIY-G---QGELPQAFCRRAAVKGCLYVLRM---PVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~g-G---~~~l~~al~r~~~~~Gg~i~l~~---~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+.+ |   ...+.++|.+.++++|++|++++   +|++|..+  ++++++|++.+|++++||+||+.
T Consensus       149 ~~~~~~~g~~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~--~~~v~gV~t~~G~~i~Ad~VV~A  216 (438)
T 3dje_A          149 YFARSGAGWAHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE--NNDVKGAVTADGKIWRAERTFLC  216 (438)
T ss_dssp             EEESSSCEEECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE--TTEEEEEEETTTEEEECSEEEEC
T ss_pred             EEeCCCCEEecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec--CCeEEEEEECCCCEEECCEEEEC
Confidence            455655 5   35788999999999999999999   99999987  78888899999989999999953

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.25  E-value=8.3e-11  Score=114.22  Aligned_cols=59  Identities=17%  Similarity=0.129  Sum_probs=48.8

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  +++ ++|++.+| +++||+||+.
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-~~V~t~~g-~i~a~~VV~A  204 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRV--DGA-WEVRCDAG-SYRAAVLVNA  204 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEE--TTE-EEEECSSE-EEEESEEEEC
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe--CCe-EEEEeCCC-EEEcCEEEEC
Confidence            45666663   588899999999999999999999999987  555 68887777 8999999954

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.24  E-value=1.1e-10  Score=122.51  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      .+++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  +++ ++|++.+|++++||.||+
T Consensus       406 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~i~Ad~VVl  467 (676)
T 3ps9_A          406 ITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRK--DDC-WLLNFAGDQQATHSVVVL  467 (676)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEE
T ss_pred             EEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe--CCe-EEEEECCCCEEECCEEEE
Confidence            45666663   688899999999999999999999999987  565 588888888999999995

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.20  E-value=5.6e-10  Score=113.09  Aligned_cols=42  Identities=26%  Similarity=0.383  Sum_probs=39.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .++||||||+|++||+||+.|+++|.+|+||||.+.+||.+.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            469999999999999999999999999999999999998754

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.20  E-value=7.3e-11  Score=116.24  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..++......+.++|.+.+++.|++|+++++|++|..+  ++. +.|++.+| +++||.||.
T Consensus       124 ~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~VIl  181 (417)
T 3v76_A          124 QLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT--ASG-FRVTTSAG-TVDAASLVV  181 (417)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTE-EEEESEEEE
T ss_pred             EEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCc-EEEeeEEEE
Confidence            35676667799999999999999999999999999886  444 67888777 899999994

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.20  E-value=2.2e-10  Score=112.24  Aligned_cols=60  Identities=25%  Similarity=0.346  Sum_probs=50.4

Q ss_pred             EEeecCCcc---hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQG---ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~~---~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+++.+|.-   .+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+| +++||.||..
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~a  225 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD--GEKVTGVKTTRG-TIHAGKVALA  225 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTC-CEEEEEEEEC
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe--CCEEEEEEeCCc-eEECCEEEEC
Confidence            556766654   78899999999999999999999999876  677788988777 7999998853

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.18  E-value=1.3e-11  Score=113.42  Aligned_cols=46  Identities=26%  Similarity=0.331  Sum_probs=42.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChh
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~   67 (431)
                      ++||+|||||++||+||..|+++|++|+||||++++||++++....
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~   47 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSD   47 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEET
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccC
Confidence            3899999999999999999999999999999999999999886543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.17  E-value=2.4e-10  Score=120.04  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-EEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI~  332 (431)
                      .+++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  +++ +.|++.+|+ +++||.||+
T Consensus       401 ~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~--~~~-v~V~t~~G~~~i~Ad~VVl  463 (689)
T 3pvc_A          401 IHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRI--DSQ-WQLTFGQSQAAKHHATVIL  463 (689)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEC--SSS-EEEEEC-CCCCEEESEEEE
T ss_pred             EEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe--CCe-EEEEeCCCcEEEECCEEEE
Confidence            55666664   688899999999999999999999999987  555 578888887 899999995

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.15  E-value=7.7e-10  Score=107.61  Aligned_cols=60  Identities=25%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+..|.   ..+.++|.+.+++.|++|+.+++|++|..+  ++++++|++.+| +++||.||..
T Consensus       138 ~~~~~~~~~~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~v~gv~~~~g-~i~a~~VV~A  200 (382)
T 1y56_B          138 SWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIE--NNEIKGVKTNKG-IIKTGIVVNA  200 (382)
T ss_dssp             EEETTCCEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEEEETTE-EEECSEEEEC
T ss_pred             EEcCCCeeECHHHHHHHHHHHHHHCCCEEECCceEEEEEEE--CCEEEEEEECCc-EEECCEEEEC
Confidence            44455553   578889999999999999999999999886  677777988777 7999999954

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.14  E-value=2.5e-10  Score=113.77  Aligned_cols=60  Identities=20%  Similarity=0.327  Sum_probs=51.0

Q ss_pred             EEeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+|..+ ...+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+|++++||.||.
T Consensus       125 ~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~--~~~v~~V~~~~G~~i~Ad~VVl  185 (447)
T 2i0z_A          125 RMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVI  185 (447)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEE
T ss_pred             EEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEec--CCcEEEEEECCCCEEECCEEEE
Confidence            3466443 5688899999999999999999999999887  7777899998898899999884

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.14  E-value=1.7e-09  Score=110.99  Aligned_cols=59  Identities=22%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             EeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCC-CcEEEEEeC--CCc--EEEeCEEEE
Q 014049          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (431)
Q Consensus       272 ~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~--~G~--~i~Ad~VI~  332 (431)
                      .++.+|   ...+.++|.+.+++.|++|+++++|++|..+  + ++++||++.  +|+  +++||.||+
T Consensus       240 ~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~--~~g~v~Gv~~~~~~g~~~~i~A~~VVl  306 (566)
T 1qo8_A          240 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN--DDHSVVGAVVHGKHTGYYMIGAKSVVL  306 (566)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC--TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC--CCCcEEEEEEEeCCCcEEEEEcCEEEE
Confidence            355554   3578899999999999999999999999987  6 888888775  676  689999885

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.13  E-value=3.4e-09  Score=108.81  Aligned_cols=60  Identities=18%  Similarity=0.240  Sum_probs=47.8

Q ss_pred             EeecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CCc--EEEeCEEEE
Q 014049          272 IYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (431)
Q Consensus       272 ~~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~  332 (431)
                      .++.+|   ...+.+.|.+.+++.|++|+++++|++|..+ ++++++||++.  +|+  +++||.||+
T Consensus       245 ~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~a~~VVl  311 (571)
T 1y0p_A          245 HRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKD-DKGTVKGILVKGMYKGYYWVKADAVIL  311 (571)
T ss_dssp             EESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-TTSCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEc-CCCeEEEEEEEeCCCcEEEEECCeEEE
Confidence            345543   2578899999999999999999999999986 13888888765  576  689999885

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.09  E-value=6.4e-10  Score=112.75  Aligned_cols=53  Identities=23%  Similarity=0.269  Sum_probs=46.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ..+.++|.+.+++.|++|+++++|++|..+  ++++++|++.+|+++.||.||..
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~--~~~v~gV~l~~G~~i~Ad~VVlA  272 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME--DGQITGVTLSNGEEIKSRHVVLA  272 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES--SSBEEEEEETTSCEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe--CCEEEEEEECCCCEEECCEEEEC
Confidence            567788888888899999999999999886  77888999999999999999954

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.06  E-value=4.3e-10  Score=115.10  Aligned_cols=61  Identities=26%  Similarity=0.348  Sum_probs=49.3

Q ss_pred             EEeecCC--cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC---C--cEEEeCEEEEC
Q 014049          271 LIYPIYG--QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---G--QDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG--~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G--~~i~Ad~VI~~  333 (431)
                      +.|+.|-  ...+..+|.+.+++.|++|+++++|++|..+  ++++++|++.+   |  .+++||.||..
T Consensus       160 ~~~~dg~vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~--~g~v~gV~~~d~~tg~~~~i~A~~VV~A  227 (561)
T 3da1_A          160 GIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYD--QGKVVGVVAKDRLTDTTHTIYAKKVVNA  227 (561)
T ss_dssp             EEEEEEECCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEEC
T ss_pred             EEecCceEcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCeEEEEEEEEcCCCceEEEECCEEEEC
Confidence            5566543  2578899999999999999999999999987  78888888754   4  47899998853

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.04  E-value=2.8e-09  Score=114.28  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++++..|.   ..+.++|.+.+++.|++|+.+++|++|..+  ++++++|++.+| +++||+||..
T Consensus       140 ~~~~~~g~v~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~~~v~~V~t~~G-~i~Ad~VV~A  202 (830)
T 1pj5_A          140 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  202 (830)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             EEECCCceEcHHHHHHHHHHHHHHcCCEEECCceEEEEEEe--CCEEEEEEECCc-EEECCEEEEC
Confidence            45566663   378899999999999999999999999987  677778988777 7999999953

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.02  E-value=1.9e-09  Score=107.31  Aligned_cols=60  Identities=18%  Similarity=0.298  Sum_probs=48.0

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEE---------------ecCCCcEEEEEeCCCcEE--EeCEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLT---------------DQNSGSYKGVRLASGQDI--LSHKL  330 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~---------------~~~~g~~~gV~~~~G~~i--~Ad~V  330 (431)
                      ++.+..|.   ..+.++|.+.+++.|++|+.+++|++|..               +  ++++++|++.+| ++  +||.|
T Consensus       170 ~~~~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~--~~~v~~V~t~~g-~i~~~Ad~V  246 (448)
T 3axb_A          170 VLIRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ--EARASAAVLSDG-TRVEVGEKL  246 (448)
T ss_dssp             EEESSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS--CEEEEEEEETTS-CEEEEEEEE
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC--CCceEEEEeCCC-EEeecCCEE
Confidence            44454442   47889999999999999999999999987               4  566778888777 68  99999


Q ss_pred             EEC
Q 014049          331 VLD  333 (431)
Q Consensus       331 I~~  333 (431)
                      |..
T Consensus       247 V~A  249 (448)
T 3axb_A          247 VVA  249 (448)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            853

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.97  E-value=2.9e-08  Score=101.82  Aligned_cols=58  Identities=24%  Similarity=0.325  Sum_probs=46.7

Q ss_pred             eecCC---cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCC-CcEEEEEeC--CCc--EEEeCEEEE
Q 014049          273 YPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLA--SGQ--DILSHKLVL  332 (431)
Q Consensus       273 ~p~gG---~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~--~G~--~i~Ad~VI~  332 (431)
                      ++.+|   ...+.+.|.+.+++.|++|+++++|++|..+  + ++++||++.  +|+  +++||.||+
T Consensus       246 ~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~~g~v~GV~~~~~~G~~~~i~A~~VVl  311 (572)
T 1d4d_A          246 RPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILED--ASGKVTGVLVKGEYTGYYVIKADAVVI  311 (572)
T ss_dssp             ESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC----CCEEEEEEEETTTEEEEEECSEEEE
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEEC--CCCeEEEEEEEeCCCcEEEEEcCEEEE
Confidence            44444   3478899999999999999999999999876  5 888888775  565  689999985

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.94  E-value=4.7e-10  Score=109.24  Aligned_cols=42  Identities=26%  Similarity=0.403  Sum_probs=38.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      |++|||||||||++||+||..|+++|++|+|+||++.+|...
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~   43 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPV   43 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC
Confidence            567999999999999999999999999999999999887643

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.79  E-value=3.1e-09  Score=101.23  Aligned_cols=42  Identities=14%  Similarity=0.125  Sum_probs=38.7

Q ss_pred             cccEEEECCChhHHHHHHHHhh--CCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++||+|||||++||+||.+|++  +|++|+|+|+++++||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            5799999999999999999975  59999999999999998765

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.72  E-value=6.5e-09  Score=98.94  Aligned_cols=60  Identities=8%  Similarity=0.056  Sum_probs=40.2

Q ss_pred             CCCccCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC----CCCCCccccc
Q 014049            5 ESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN----PFYGSHFSSL   64 (431)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~----~~~GG~~~t~   64 (431)
                      .....++.|.-++.....+||+|||||++||+||..|+++|++|+|+|++    ..+||.+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A            5 HHHHHHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             ----------------CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             ccccccccCCCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            33445555555555666899999999999999999999999999999994    5899987753

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.72  E-value=7.1e-09  Score=97.59  Aligned_cols=42  Identities=21%  Similarity=0.195  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .|++|||+|||||++||+||.+|+|+|++|+|+|++. +||..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~   44 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRV   44 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGG
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCee
Confidence            4778999999999999999999999999999999974 56643

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.70  E-value=1e-08  Score=96.71  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=37.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||+|||||.+||+||.+|++.|++|+|+|++ .+||.+..
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~   46 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMAN   46 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeec
Confidence            699999999999999999999999999999985 68887653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.69  E-value=2.3e-07  Score=91.18  Aligned_cols=55  Identities=15%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (431)
                      ..++.+.+.+.+++.|.+|++++.|++|..+  ++++.+|++++|+++.||.||+..
T Consensus       193 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~v~l~dG~~i~aD~Vv~a~  247 (415)
T 3lxd_A          193 GEALSEFYQAEHRAHGVDLRTGAAMDCIEGD--GTKVTGVRMQDGSVIPADIVIVGI  247 (415)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEES--SSBEEEEEESSSCEEECSEEEECS
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECC
Confidence            4678888889899999999999999999875  678889999999999999999643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.67  E-value=5.6e-07  Score=88.16  Aligned_cols=56  Identities=16%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             CcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECC
Q 014049          277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (431)
Q Consensus       277 G~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (431)
                      ...++.+.+.+.+++.|.+++++++|++|..+  ++++.+|++++|+++.||.||+..
T Consensus       182 ~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~~V~~~dG~~i~aD~Vv~a~  237 (404)
T 3fg2_P          182 VTPEISSYFHDRHSGAGIRMHYGVRATEIAAE--GDRVTGVVLSDGNTLPCDLVVVGV  237 (404)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTSCEEECSEEEECC
T ss_pred             cCHHHHHHHHHHHHhCCcEEEECCEEEEEEec--CCcEEEEEeCCCCEEEcCEEEECc
Confidence            34678888989999999999999999999876  678889999999999999999643

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.66  E-value=1e-08  Score=103.30  Aligned_cols=56  Identities=27%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             ccCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049            8 SELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus         8 ~~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +.++...|+..+ .+|||+|||||.+||+||..|++.|++|+|+|+++.+||.|...
T Consensus        12 ~~~~~n~~~~~m-~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~~   67 (491)
T 3urh_A           12 DLGTENLYFQSM-MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLNV   67 (491)
T ss_dssp             ---------------CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             ccCcCCcchhhc-ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccc
Confidence            445556666644 45999999999999999999999999999999999999976643

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.65  E-value=1.7e-08  Score=95.24  Aligned_cols=37  Identities=14%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+.|||||||||.+||+||..|+++|++|+|+|++..
T Consensus         2 ~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            2 SNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            3469999999999999999999999999999999763

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.64  E-value=2e-08  Score=97.46  Aligned_cols=59  Identities=17%  Similarity=0.208  Sum_probs=47.9

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++++.+|.   ..+.++|.+.+++.|++|+++++|++|..+  ++++ +|++.+| +++||.||..
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~--~~~~-~v~~~~g-~~~a~~vV~A  214 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEAL-FIKTPSG-DVWANHVVVA  214 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSE-EEEETTE-EEEEEEEEEC
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE--CCEE-EEEcCCc-eEEcCEEEEC
Confidence            55666664   578899999999999999999999999876  5554 7887766 8999999853

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.61  E-value=1.8e-08  Score=101.31  Aligned_cols=52  Identities=21%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.+++++++|++|..+  +++ +.|++++|+++.||.||+.
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vi~A  283 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST--ENC-YNVVLTNGQTICADRVMLA  283 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee--CCE-EEEEECCCcEEEcCEEEEe
Confidence            467888888889999999999999999875  455 4788899999999999953

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.59  E-value=1.9e-08  Score=98.51  Aligned_cols=43  Identities=26%  Similarity=0.277  Sum_probs=39.7

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      |+++||||||||++||+||..|+++|.+|+|+|+++.+|+++.
T Consensus         2 M~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~   44 (401)
T 2gqf_A            2 SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (401)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcE
Confidence            4579999999999999999999999999999999999987654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.59  E-value=3.9e-08  Score=103.14  Aligned_cols=61  Identities=15%  Similarity=0.185  Sum_probs=49.7

Q ss_pred             CCCCCCccCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049            2 TGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|.|.+..|+.+..++ ....+||+|||||++||+||..|+++|++|+|+|+++++||.+..
T Consensus       372 ~g~e~~~~~~~~~~~~-~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          372 MGEEWRRGWHPERIRA-KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             TTTTTTTCCCSSCCCC-CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             cCcccccccCccccCc-ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            4556555565444444 345689999999999999999999999999999999999998664

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.59  E-value=3.1e-08  Score=94.81  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      |+++||+|||||++||++|..|++.|++|+|+|+++.+||.+..
T Consensus         1 m~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A            1 MDSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            35689999999999999999999999999999999999998764

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.57  E-value=4e-08  Score=95.99  Aligned_cols=59  Identities=22%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+.+|.   ..+.++|.+.+++.|++|+++++|++|..+  ++. +.|++.+| +++||.||..
T Consensus       142 ~~~~~~g~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~v~t~~g-~i~a~~VV~A  203 (397)
T 2oln_A          142 FLQPDGGTIDVRGTLAALFTLAQAAGATLRAGETVTELVPD--ADG-VSVTTDRG-TYRAGKVVLA  203 (397)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEEESCCEEEEEEE--TTE-EEEEESSC-EEEEEEEEEC
T ss_pred             EEcCCCCEEcHHHHHHHHHHHHHHcCCEEECCCEEEEEEEc--CCe-EEEEECCC-EEEcCEEEEc
Confidence            44555553   467888999888999999999999999886  554 45776554 7999998853

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.57  E-value=6.8e-08  Score=91.06  Aligned_cols=57  Identities=14%  Similarity=0.190  Sum_probs=47.2

Q ss_pred             CCccCCCCCCCCCCC------------------CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCccc
Q 014049            6 SESELPVPPYPPIEP------------------TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus         6 ~~~~~~~~~~~~~~~------------------~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   62 (431)
                      .+..||.+..+++..                  ..+||+|||+|++||+||..|+++  |++|+|+|+++.+||.+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           31 KKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             CSTTCTTCCCCCCCHHHHHHHHHHHHHHHHHHTTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             HhcCCCccccccccccccchhhhhhhhhhhcccCcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            345687777666432                  246999999999999999999999  999999999999998544

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.56  E-value=4e-08  Score=96.42  Aligned_cols=49  Identities=16%  Similarity=0.037  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           11 PVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        11 ~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      |.++-++-.++.+||+|||||++||++|..|+++|++|+|+|+++.++.
T Consensus        12 ~~~~~~~~~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~   60 (407)
T 3rp8_A           12 HSSGENLYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP   60 (407)
T ss_dssp             -----------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC--
T ss_pred             cCCCCcccCCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            3333444455679999999999999999999999999999999987753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.55  E-value=3.4e-08  Score=94.04  Aligned_cols=45  Identities=20%  Similarity=0.337  Sum_probs=40.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++.++||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            345799999999999999999999999999999999999997753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.54  E-value=3.4e-08  Score=98.82  Aligned_cols=43  Identities=23%  Similarity=0.260  Sum_probs=40.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||+|||||.+||+||..|++.|++|+++|+++.+||.|..
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            4699999999999999999999999999999999999998764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.53  E-value=5.9e-08  Score=91.78  Aligned_cols=53  Identities=25%  Similarity=0.317  Sum_probs=38.4

Q ss_pred             cCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049            9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus         9 ~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|...-.. ++.++||+|||||++|++||..|+++|++|+|+|+ ..+||.+..
T Consensus         4 ~l~~~~~~~-m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A            4 NLHAVSSEE-KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             -----------CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             ccccccccc-ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            344443333 33469999999999999999999999999999999 578887654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.52  E-value=4.4e-08  Score=94.34  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++..+||+|||||++||+||..|+++|++|+|+|+++.+||.+..
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            455799999999999999999999999999999999999998753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.51  E-value=7.3e-08  Score=89.80  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG~~   61 (431)
                      .++||+|||||++||+||..|++. |.+|+|+|+++.+||.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            358999999999999999999997 99999999999998754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.51  E-value=8.5e-08  Score=92.47  Aligned_cols=40  Identities=18%  Similarity=0.133  Sum_probs=36.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++||||||||++||++|+.|+++|++|+|||++...+|
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g   43 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDV   43 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCc
Confidence            3578999999999999999999999999999999885444

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.51  E-value=5.8e-08  Score=98.91  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      ....+||||||||++|+++|..|++.|++|+|+|+++.+||.+...
T Consensus        18 ~~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~   63 (549)
T 4ap3_A           18 GTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWN   63 (549)
T ss_dssp             --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC
T ss_pred             CCCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC
Confidence            3457999999999999999999999999999999999999977643

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.50  E-value=7.5e-08  Score=93.05  Aligned_cols=58  Identities=19%  Similarity=0.293  Sum_probs=45.8

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ++.+..|.   ..+.++|.+.++..|++|+.+++|++|..+  +++ +.|++.+| +++||.||.
T Consensus       138 ~~~~~~g~~~~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~-~~v~~~~g-~~~a~~vV~  198 (372)
T 2uzz_A          138 LFETDSGFLRSELAIKTWIQLAKEAGCAQLFNCPVTAIRHD--DDG-VTIETADG-EYQAKKAIV  198 (372)
T ss_dssp             EEESSCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSS-EEEEESSC-EEEEEEEEE
T ss_pred             EEeCCCcEEcHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEc--CCE-EEEEECCC-eEEcCEEEE
Confidence            44455553   478899999999999999999999999876  444 56877776 599999885

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.49  E-value=8.5e-08  Score=94.16  Aligned_cols=43  Identities=16%  Similarity=0.205  Sum_probs=37.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~   62 (431)
                      |..+||+|||||++||++|..|+++|.+ |+|+|+++.++....
T Consensus         2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~   45 (410)
T 3c96_A            2 SEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV   45 (410)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccccee
Confidence            4568999999999999999999999999 999999998765433

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.48  E-value=6.2e-08  Score=96.79  Aligned_cols=53  Identities=13%  Similarity=0.242  Sum_probs=43.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEE-eCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~-~~~G~~i~Ad~VI~~  333 (431)
                      ..++.+.+.+.+++.|.+|+++++|++|..+  ++..+.|+ +++|+ +.||.||+.
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~~g~-i~aD~Vv~a  263 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSAD--ADGRRVATTMKHGE-IVADQVMLA  263 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--TTSCEEEEESSSCE-EEESEEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEc--CCCEEEEEEcCCCe-EEeCEEEEe
Confidence            3567888888899999999999999999875  34435788 88888 999999964

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.48  E-value=9.9e-08  Score=93.87  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~--~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+++.|++|+.+++|++|..+. ++..+.|++.+|+  +++||.||.
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~-~~~~v~v~~~~g~~~~~~a~~vV~  160 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFFG-TDSVTTIEDINGNKREIEARFIID  160 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC-CEEEEEEEcCCCCEEEEEcCEEEE
Confidence            3455667777778899999999999998872 4444567778888  799999884

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.48  E-value=8.9e-08  Score=90.77  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=37.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCccc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~   62 (431)
                      ++||||||||++||+||+.|+++  |++|+|+|+++.+||.+.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            58999999999999999999997  999999999999987543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.48  E-value=9.4e-08  Score=93.48  Aligned_cols=40  Identities=13%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..+||+|||||++||++|..|+++|.+|+|+|+++.++.+
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            4689999999999999999999999999999999887654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.47  E-value=1.2e-07  Score=89.52  Aligned_cols=40  Identities=18%  Similarity=0.275  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++||+|||||++||+||..|+++|++|+|+|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            589999999999999999999999999999999  9998775

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.45  E-value=1.4e-07  Score=93.84  Aligned_cols=43  Identities=21%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~t   63 (431)
                      ..+||+|||||++||+||..|++.|.  +|+|+|+++.+||.+..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            46899999999999999999999999  99999999999997754

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.45  E-value=1.5e-07  Score=91.53  Aligned_cols=51  Identities=18%  Similarity=0.220  Sum_probs=42.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ..+.++|.+.++..|++|+.+++|++|..+  ++. +.|++.+| +++||.||..
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A  200 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec--CCe-EEEEeCCC-EEEeCEEEEe
Confidence            588899999999999999999999999876  444 46776655 7999999953

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.45  E-value=1.3e-07  Score=95.48  Aligned_cols=53  Identities=19%  Similarity=0.100  Sum_probs=43.9

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~~  333 (431)
                      ...+..+|.+.+++.|++|+.+++|++|..+  + ++++|++   .+|+  +++||.||..
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~--~-~~~~V~~~d~~~G~~~~i~A~~VV~A  205 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRE--N-GLWIVEAEDIDTGKKYSWQARGLVNA  205 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEE--T-TEEEEEEEETTTCCEEEEEESCEEEC
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe--C-CEEEEEEEECCCCCEEEEECCEEEEC
Confidence            3578899999999999999999999999876  4 5678887   3676  7899999853

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.45  E-value=8.7e-08  Score=90.80  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=40.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..+||+|||||++||+||..|++.|++|+|+|+++.+||.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~   48 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA   48 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh
Confidence            3589999999999999999999999999999999999998853

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.44  E-value=1.7e-07  Score=93.32  Aligned_cols=44  Identities=20%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ....+||+|||||++||+||..|+++|++|+|+|+++++||.+.
T Consensus       119 ~~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          119 RELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             SSCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            34568999999999999999999999999999999999999754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.44  E-value=1.2e-07  Score=96.16  Aligned_cols=45  Identities=33%  Similarity=0.468  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++.++||||||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   84 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPH   84 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCcccc
Confidence            456799999999999999999999999999999999989998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.44  E-value=1.4e-07  Score=96.11  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=40.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      +.++||+|||||++||+||..|+++|++|+|+|+++.+||.+.
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            4579999999999999999999999999999999999999775

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.44  E-value=1.4e-07  Score=89.41  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=39.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +..+||+|||||++||+||..|++.|++|+++|++ .+||.+..
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            34689999999999999999999999999999999 78997764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.43  E-value=1.3e-07  Score=94.71  Aligned_cols=41  Identities=22%  Similarity=0.239  Sum_probs=37.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .+|||+|||||.+||+||..|++.|++|+|+|+++.+||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999998666654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.43  E-value=1.6e-07  Score=91.18  Aligned_cols=41  Identities=15%  Similarity=0.066  Sum_probs=36.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      |..+||+|||||++||++|..|+++|++|+|+|+++.+++.
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~   49 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAF   49 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCC
Confidence            34689999999999999999999999999999999988754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.42  E-value=1.5e-07  Score=92.28  Aligned_cols=40  Identities=25%  Similarity=0.391  Sum_probs=36.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~   60 (431)
                      .++||||||||++||++|+.|+++  |++|+|||+++..+|.
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~   76 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEE   76 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcc
Confidence            459999999999999999999999  9999999998766554

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.42  E-value=1.1e-07  Score=95.50  Aligned_cols=43  Identities=19%  Similarity=0.285  Sum_probs=38.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.+|||+|||||.+||+||..|++.|++|+|+|++ .+||.|..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            34799999999999999999999999999999976 78988754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.41  E-value=2.1e-07  Score=90.91  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            3 PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            44689999999999999999999999999999999874

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.40  E-value=1.3e-07  Score=91.12  Aligned_cols=43  Identities=19%  Similarity=0.305  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t   63 (431)
                      |.++||+|||||++||+||..|++.|+ +|+|+|+++ +||.+..
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~   45 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKH   45 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHT
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcccc
Confidence            346899999999999999999999999 999999999 9986654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.40  E-value=1.8e-07  Score=84.42  Aligned_cols=36  Identities=17%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .++||+|||||++||.||..|++.|.+|+|+|++..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~   37 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   37 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            468999999999999999999999999999999843

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.39  E-value=1.9e-07  Score=98.51  Aligned_cols=60  Identities=18%  Similarity=0.253  Sum_probs=46.5

Q ss_pred             CCCCCccCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049            3 GNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      |.|.+..|....+++ ....+||+|||||++||+||..|++.|++|+|+|+++++||.+..
T Consensus       371 g~e~~~~~~~~~~~~-~~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          371 GEEYRRGWHPEKFRQ-TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             TTHHHHCCCTTCCCC-CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             ccccccccccccccc-ccCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            444433453222333 234689999999999999999999999999999999999998764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.39  E-value=1.6e-07  Score=88.20  Aligned_cols=42  Identities=19%  Similarity=0.294  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEE-EccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~v-lE~~~~~GG~~~t   63 (431)
                      .++||+|||||++||+||..|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            458999999999999999999999999999 999 788998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.39  E-value=1.8e-07  Score=89.16  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++..+||+|||||++|++||..|++.|++|+|+|++ .+||.+..
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            345699999999999999999999999999999975 78887643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.38  E-value=1.1e-07  Score=95.46  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=40.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.++||+|||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            34699999999999999999999999999999999999997654

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.37  E-value=2.8e-07  Score=94.61  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      |..+||||||||++||++|+.|+++|++|+|+|+++.+++.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~   61 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYR   61 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCc
Confidence            45699999999999999999999999999999999776644

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.37  E-value=2.6e-07  Score=93.64  Aligned_cols=44  Identities=30%  Similarity=0.372  Sum_probs=39.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC--------CCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~--------~~GG~~~t~   64 (431)
                      .+|||+|||||.+|++||..|++.|++|+++|+++        .+||.|...
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   82 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNV   82 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCc
Confidence            46999999999999999999999999999999975        789977543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.37  E-value=1.4e-07  Score=94.94  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=37.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||+|||||.+|++||..|++.|++|+|+|++. +||.|..
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~~   48 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCAR   48 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCcccc
Confidence            5999999999999999999999999999999974 9997743

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.37  E-value=1.7e-07  Score=93.73  Aligned_cols=42  Identities=24%  Similarity=0.323  Sum_probs=39.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||+|||||.+|++||..|++.|++|+|+|+++.+||.|..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~~   43 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCLN   43 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCCC
Confidence            489999999999999999999999999999999999998764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.36  E-value=2.8e-07  Score=89.99  Aligned_cols=51  Identities=14%  Similarity=0.125  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEE-EEEeCCCcEEEeCEEEE
Q 014049          280 ELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYK-GVRLASGQDILSHKLVL  332 (431)
Q Consensus       280 ~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~-gV~~~~G~~i~Ad~VI~  332 (431)
                      .+.+.|.+.+++. |++|+++++|++|..+  +++++ .|++.+|++++||.||.
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~g~v~~~~g~~~~ad~vV~  160 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRD--ERHAIDQVRLNDGRVLRPRVVVG  160 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEEC--TTSCEEEEEETTSCEEEEEEEEE
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEc--CCceEEEEEECCCCEEECCEEEE
Confidence            4556677777777 8999999999999876  45543 68888999999999884

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.36  E-value=1.4e-07  Score=94.03  Aligned_cols=51  Identities=18%  Similarity=0.156  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEE
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL  332 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~  332 (431)
                      .+.+.|.+.++..|++|+++++|++|..+  ++++++|++.   +|+  +++||.||.
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~G~~~~~~ad~VV~  156 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFE--DGYVKGAVLFNRRTNEELTVYSKVVVE  156 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCceEEEEcCEEEE
Confidence            45667777777889999999999999887  7777777664   676  799999994

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.36  E-value=1.7e-07  Score=94.09  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.++||||||||.+|++||..|++.|++|+|+|+++.+||.|..
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   47 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCceee
Confidence            34699999999999999999999999999999999999997653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.36  E-value=2.9e-07  Score=95.13  Aligned_cols=43  Identities=14%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..|||||||+|++||+||..|+++|++|+|+|+.+..||.+..
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~~   87 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIG   87 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTT
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcccc
Confidence            4699999999999999999999999999999999999986543

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.36  E-value=2.4e-07  Score=92.71  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=40.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .++||+|||||++|++||..|++.|++|+|+|+++.+||.|..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            4689999999999999999999999999999999999998754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.36  E-value=1.9e-07  Score=93.57  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.++||||||||.+|++||..|++.|++|+|+|+++.+||.|..
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCLN   47 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCcccc
Confidence            34699999999999999999999999999999999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.36  E-value=2e-07  Score=94.72  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHh-hCCCcEEEEccCCCCCCccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La-~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +.++||||||||++||+||..|+ +.|++|+|+|+++.+||.+...
T Consensus         6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~   51 (540)
T 3gwf_A            6 THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN   51 (540)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc
Confidence            34689999999999999999999 9999999999999999977643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.35  E-value=2.6e-07  Score=92.87  Aligned_cols=44  Identities=30%  Similarity=0.320  Sum_probs=39.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEcc--------CCCCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP--------NPFYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~--------~~~~GG~~~t~   64 (431)
                      .+|||+|||||.+||+||..|++.|++|+++|+        +..+||.|...
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~   56 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNV   56 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeeccc
Confidence            469999999999999999999999999999998        66899977543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.35  E-value=2.6e-07  Score=93.98  Aligned_cols=44  Identities=23%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.++||||||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~   50 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYW   50 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            34689999999999999999999999999999999999998753

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.34  E-value=3.1e-07  Score=92.93  Aligned_cols=39  Identities=38%  Similarity=0.596  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      +.++||||||||++||++|+.|+++|++|+|+|+++..+
T Consensus         5 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~   43 (512)
T 3e1t_A            5 PEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR   43 (512)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC
T ss_pred             CccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCC
Confidence            346999999999999999999999999999999998544

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.34  E-value=3.5e-07  Score=93.54  Aligned_cols=38  Identities=21%  Similarity=0.213  Sum_probs=33.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .++||||||||++||++|+.|+++|++|+|||+++.++
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            35899999999999999999999999999999998875

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.34  E-value=2.3e-07  Score=95.36  Aligned_cols=53  Identities=13%  Similarity=0.195  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..+.++|.+.+...|++|+++++|.+|..+ ++++++||.+   .+|+  +++|+.||+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~-~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  200 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKN-QDGAVVGCTALCIETGEVVYFKARATVL  200 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEEC-TTSCEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEC-CCCEEEEEEEEEcCCCeEEEEEcCEEEE
Confidence            578899999988999999999999999874 2578888875   4676  589999884

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.34  E-value=2.2e-07  Score=92.54  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=43.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      -..+.+.+.+.+++.|.+++++++|++|..+  ++. +.|++++|+++.||.||+.
T Consensus       207 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~~D~vv~A  259 (455)
T 2yqu_A          207 DLEVSRAAERVFKKQGLTIRTGVRVTAVVPE--AKG-ARVELEGGEVLEADRVLVA  259 (455)
T ss_dssp             CHHHHHHHHHHHHHHTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             CHHHHHHHHHHHHHCCCEEEECCEEEEEEEe--CCE-EEEEECCCeEEEcCEEEEC
Confidence            3578888888888999999999999999876  443 4677778999999999953

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.34  E-value=2.2e-07  Score=88.22  Aligned_cols=44  Identities=14%  Similarity=0.213  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEcc----CCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDP----NPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~----~~~~GG~~~t   63 (431)
                      +..+||+|||||++|+++|..|++.|++|+|+|+    ....||.+..
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            4568999999999999999999999999999999    6778887654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.33  E-value=4.3e-07  Score=91.54  Aligned_cols=40  Identities=18%  Similarity=0.227  Sum_probs=35.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++||+|||||++||++|+.|+++|.+|+|+||++.++.
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   48 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG   48 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            3468999999999999999999999999999999988753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.33  E-value=2.4e-07  Score=96.17  Aligned_cols=52  Identities=15%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..|.++|.+.+...|++|+.++.|.+|..+  +|+++||.+   .+|+  .++|+.||+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  214 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec--CCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence            478899999988899999999999999987  788888865   4676  489999884

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.33  E-value=2.3e-07  Score=92.70  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=38.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +++||+|||||++|++||..|++.|++|+|+|++ .+||.+..
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~~   43 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCLN   43 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCcccc
Confidence            4689999999999999999999999999999998 78887653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.33  E-value=4.4e-07  Score=92.33  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=36.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .++||+|||||++||++|+.|+++|.+|+|+||++.++.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~   42 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSP   42 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            468999999999999999999999999999999987653

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.33  E-value=2.7e-07  Score=92.28  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.++||+|||||++|++||..|++.|++|+|+|++ .+||.|..
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~~   44 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCVN   44 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCccccC
Confidence            35689999999999999999999999999999998 78997753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.33  E-value=2.6e-07  Score=92.26  Aligned_cols=52  Identities=13%  Similarity=0.090  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-EEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.+++++++|++|..+  ++. +.|++++|+ ++.||.||..
T Consensus       207 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~G~~~i~~D~vv~a  259 (463)
T 2r9z_A          207 PLLSATLAENMHAQGIETHLEFAVAALERD--AQG-TTLVAQDGTRLEGFDSVIWA  259 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEEE--TTE-EEEEETTCCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCe-EEEEEeCCcEEEEcCEEEEC
Confidence            367778888888999999999999999875  343 578888999 8999999953

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.32  E-value=3.1e-07  Score=94.28  Aligned_cols=39  Identities=15%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhC------CCcEEEEccCCCCCCc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSH   60 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~------G~~V~vlE~~~~~GG~   60 (431)
                      ++||||||||++||+||+.|+++      |.+|+||||++.+|+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            58999999999999999999999      9999999999999875

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.32  E-value=4e-07  Score=93.23  Aligned_cols=61  Identities=18%  Similarity=0.299  Sum_probs=47.4

Q ss_pred             EEeecCCc--chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC---CCc--EEEeCEEEEC
Q 014049          271 LIYPIYGQ--GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~--~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---~G~--~i~Ad~VI~~  333 (431)
                      +.|+.|..  ..+..++.+.++..|++|+.+++|++|..+  ++++++|++.   +|+  +++||.||..
T Consensus       178 ~~~~dg~v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~--~~~v~gV~~~d~~tg~~~~i~A~~VV~A  245 (571)
T 2rgh_A          178 GVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYE--GDQIVGVKARDLLTDEVIEIKAKLVINT  245 (571)
T ss_dssp             EEECCEECCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEBSCEEEC
T ss_pred             EEecCCeEchHHHHHHHHHHHHHcCCeEEeccEEEEEEEe--CCEEEEEEEEEcCCCCEEEEEcCEEEEC
Confidence            45554432  467888888889999999999999999987  6788888753   343  6999999853

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.32  E-value=4.4e-07  Score=94.18  Aligned_cols=52  Identities=13%  Similarity=0.116  Sum_probs=41.8

Q ss_pred             chHHHHHHHHHHhc--CcEEEeCcceeEEEEecCCC---cEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVK--GCLYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~--Gg~i~l~~~V~~I~~~~~~g---~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..+.++|.+.++..  |.+|+.++.|.++.++  ++   +++||..   .+|+  +++|+.||+
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~--~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVL  227 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD--KNTPNRIAGAVGFNLRANEVHIFKANAMVV  227 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC--SSSTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe--CCccceEEEEEEEEcCCCcEEEEEeCEEEE
Confidence            46778888888877  9999999999999887  44   8888864   3554  589999885

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.32  E-value=4e-07  Score=92.89  Aligned_cols=39  Identities=13%  Similarity=0.155  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ++||+|||||++||++|+.|+++|.+|+|+||++.++..
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~   64 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITH   64 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC
Confidence            589999999999999999999999999999999987644

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.32  E-value=2.5e-07  Score=87.30  Aligned_cols=43  Identities=12%  Similarity=0.194  Sum_probs=38.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      |..+||+|||||++||+||..|+++|++|+|+|+. .+||.+..
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   45 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   45 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEec
Confidence            45689999999999999999999999999999974 78887543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.31  E-value=3.8e-07  Score=91.56  Aligned_cols=53  Identities=8%  Similarity=0.154  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc-----EEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-----DILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~-----~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.++++++.|++|..+. ++. +.|++.+++     ++.||.||+.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~-~~~-~~v~~~~~~~~~~~~~~~D~vi~a  284 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQD-DGK-LLVKYKNVETGEESEDVYDTVLWA  284 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECT-TSC-EEEEEEETTTCCEEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCc-EEEEEecCCCCceeEEEcCEEEEC
Confidence            4677888888899999999999999998751 343 356666554     7899999964

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.31  E-value=2.7e-07  Score=91.83  Aligned_cols=52  Identities=8%  Similarity=0.091  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+.+.+.+++.|.+++++++|++|..+  ++..+.|++++|+++.||.||..
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vv~a  260 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN--TDGSLTLELEDGRSETVDCLIWA  260 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCcEEEEEECCCcEEEcCEEEEC
Confidence            57788888888999999999999999865  33335688889999999999953

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.31  E-value=2.7e-07  Score=92.52  Aligned_cols=54  Identities=4%  Similarity=-0.036  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC-cEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-~~i~Ad~VI~~  333 (431)
                      .++++.+.+.++..|.+++++++|++|..+ ++++.+.|++++| +++.||.||+.
T Consensus       226 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~~v~~~~G~~~i~~D~vv~a  280 (479)
T 2hqm_A          226 ECIQNTITDHYVKEGINVHKLSKIVKVEKN-VETDKLKIHMNDSKSIDDVDELIWT  280 (479)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEC-C-CCCEEEEETTSCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEEc-CCCcEEEEEECCCcEEEEcCEEEEC
Confidence            367788888888999999999999999764 1343457888899 78999999953

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.31  E-value=4.5e-07  Score=85.21  Aligned_cols=40  Identities=18%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t   63 (431)
                      |||+|||||++||+||..|++.|+ +|+|+|++ .+||.+..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~   42 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITG   42 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCccccc
Confidence            799999999999999999999999 99999995 78887654

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.30  E-value=4e-07  Score=92.60  Aligned_cols=41  Identities=17%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ..++||||||+|++||+||+.|++ |.+|+||||.+..||..
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            346899999999999999999999 99999999999887654

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.30  E-value=5.1e-07  Score=90.89  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=37.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..+||+|||||++||++|..|++.|++|+|+|+++.+|++
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            4689999999999999999999999999999999999875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.27  E-value=3.2e-07  Score=87.94  Aligned_cols=37  Identities=11%  Similarity=0.020  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC------CcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G------~~V~vlE~~~~~GG   59 (431)
                      .||||||||++||++|+.|+++|      ++|+|||++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            39999999999999999999998      99999999985544

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.26  E-value=6.7e-07  Score=90.07  Aligned_cols=39  Identities=21%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .++||+|||||++||++|+.|+++|.+|+|+||++.++.
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~   49 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG   49 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            358999999999999999999999999999999988753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.26  E-value=4.4e-07  Score=91.27  Aligned_cols=53  Identities=13%  Similarity=0.139  Sum_probs=43.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++++.+.+.+++.|.+|+++++|++|..+  ++..+.|++++|+++.||.||+.
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  283 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKN--ADGTRHVVFESGAEADYDVVMLA  283 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEECCCcEEEcCEEEEc
Confidence            367888888889999999999999999865  33335788889999999999954

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.26  E-value=4.8e-07  Score=93.23  Aligned_cols=52  Identities=19%  Similarity=0.320  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..|.++|.+.+...|++|+.++.|.+|..+  +|+++||.+   .+|+  +++|+.||+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  211 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME--NGECRGVIALCIEDGTIHRFRAKNTVI  211 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE--TTEEEEEEEEETTTCCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478899999888899999999999999987  788888876   3676  689999884

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.25  E-value=4.2e-07  Score=90.73  Aligned_cols=42  Identities=31%  Similarity=0.405  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +++||||||||.+|++||..|++.|++|+|+|+++ +||.|..
T Consensus         5 ~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~~   46 (464)
T 2eq6_A            5 KTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCLN   46 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCCC
Confidence            46999999999999999999999999999999998 8987643

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.25  E-value=5.1e-07  Score=87.97  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=33.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   37 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            479999999999999999999999999999998753

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.25  E-value=6.5e-07  Score=87.36  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .+|+|||||++||++|..|+++|++|+||||++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999997654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.25  E-value=5.8e-07  Score=92.02  Aligned_cols=45  Identities=20%  Similarity=0.317  Sum_probs=35.9

Q ss_pred             CCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCCC
Q 014049           15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGS   59 (431)
Q Consensus        15 ~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG   59 (431)
                      ..+....+|||||||||++|++||..|++.|.+|+|+|++. .+|+
T Consensus        14 ~~~~~~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           14 LVPRGSHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             ------CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             ccccccCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            33444557999999999999999999999999999999985 5665

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.24  E-value=4e-07  Score=91.68  Aligned_cols=53  Identities=9%  Similarity=0.156  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.+++++++|++|..+  ++..+.|++++|+++.||.||+.
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~~v~~~~G~~i~~D~vv~a  287 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLN--TDGSKHVTFESGKTLDVDVVMMA  287 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEC--TTSCEEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCceEEEEECCCcEEEcCEEEEC
Confidence            367888888889999999999999999865  33335788889999999999964

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.24  E-value=6.6e-07  Score=83.21  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~  335 (431)
                      +.+...+...+.+.+.+.++..|.+++. ++|++|..   ++   +|++.+|+++.+|.||....
T Consensus       166 v~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~---~~---~v~~~~g~~~~~D~vi~a~G  223 (297)
T 3fbs_A          166 TTFFTNGIVEPDADQHALLAARGVRVET-TRIREIAG---HA---DVVLADGRSIALAGLFTQPK  223 (297)
T ss_dssp             EEEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEET---TE---EEEETTSCEEEESEEEECCE
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeec---CC---eEEeCCCCEEEEEEEEEccC
Confidence            4445555556777788888899999995 99999853   22   67788999999999996543

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.23  E-value=5.3e-07  Score=90.73  Aligned_cols=42  Identities=14%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .++||+|||+|++||+||..|+++ ++|+|+|+++++||.+..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            468999999999999999999999 999999999999998764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.23  E-value=7.5e-07  Score=88.88  Aligned_cols=42  Identities=12%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCc---EEEEccCCCCCCccccc
Q 014049           23 FDLIVIGTGLPESVISAAASA---SGKS---VLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~---~G~~---V~vlE~~~~~GG~~~t~   64 (431)
                      +||+|||||++||+||..|++   .|.+   |+|+|+++.+||.+...
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~   50 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYT   50 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecC
Confidence            699999999999999999999   9999   99999999999988753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.23  E-value=7.1e-07  Score=88.19  Aligned_cols=33  Identities=9%  Similarity=0.050  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            799999999999999999999999999999987

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.23  E-value=5.4e-07  Score=89.73  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=38.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||||||||.+|++||..|++.|++|+|+|++ .+||.|..
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~~   43 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCLN   43 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCcC
Confidence            589999999999999999999999999999998 88987753

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.22  E-value=4.8e-07  Score=90.17  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||||||||.+|++||..|++.|++|+|+|+ +.+||.|..
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~~   45 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCLN   45 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCCC
Confidence            468999999999999999999999999999999 789998764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.21  E-value=1.3e-06  Score=91.30  Aligned_cols=42  Identities=26%  Similarity=0.411  Sum_probs=39.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+||+|||||.+|+.||..|++.|++|+|+|+++++||.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            468999999999999999999999999999999999999864

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.21  E-value=1e-06  Score=89.62  Aligned_cols=52  Identities=15%  Similarity=0.198  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.++..|++++.+ .|++|..+ +++.+++|++.+|++++||.||.
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~-~~g~~~~v~~~~g~~i~ad~vV~  216 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLN-NRGYISNLLTKEGRTLEADLFID  216 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEEC-TTSCEEEEEETTSCEECCSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEc-CCCcEEEEEECCCcEEEeCEEEE
Confidence            577888888888899999999 89999875 25666788888898999999994

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.21  E-value=1.9e-06  Score=89.40  Aligned_cols=38  Identities=13%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYG   58 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~G   58 (431)
                      .++||+|||||++||++|+.|++ .|.+|+|+||++.++
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 999999999998765

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.20  E-value=1.3e-06  Score=83.42  Aligned_cols=39  Identities=21%  Similarity=0.126  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +||+|||||++|+.||..|+++|++|+++|++...+.-.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            699999999999999999999999999999987554443

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.20  E-value=8.8e-07  Score=86.00  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~G   58 (431)
                      .||+|||||++||++|..|+++  |++|+|+|+++.+.
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~   38 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQE   38 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCC
Confidence            3899999999999999999999  99999999998873

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.18  E-value=5.4e-07  Score=90.84  Aligned_cols=51  Identities=10%  Similarity=0.121  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+.+.+.+++.|.+|+++++|++|..+  +++ +.|++.+|+++.||.||+.
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~aD~Vv~a  274 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT--GAG-VLVTMTDGRTVEGSHALMT  274 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC--SSS-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe--CCE-EEEEECCCcEEEcCEEEEC
Confidence            67788888889999999999999999865  444 4677788999999999953

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.18  E-value=1.2e-06  Score=82.34  Aligned_cols=39  Identities=15%  Similarity=0.382  Sum_probs=35.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      +|||+|||||++||+||..|++.|++|+|+|+  ++||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            48999999999999999999999999999986  5788765

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.17  E-value=1.2e-06  Score=89.46  Aligned_cols=39  Identities=28%  Similarity=0.357  Sum_probs=35.2

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~GG   59 (431)
                      .+|||||||||++|+.||..|++.|.+|+|+|++. .+|+
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~   65 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQ   65 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCC
Confidence            46999999999999999999999999999999984 5553

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.17  E-value=8.5e-07  Score=89.40  Aligned_cols=53  Identities=9%  Similarity=0.017  Sum_probs=43.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcE-EEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~-i~Ad~VI~~  333 (431)
                      .++++.+.+.+++.|.++++++.|++|..+  ++..+.|++++|++ +.||.||+.
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~D~vi~a  270 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKV--SDKNLSIHLSDGRIYEHFDHVIYC  270 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES--STTCEEEEETTSCEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEc--CCceEEEEECCCcEEEECCEEEEC
Confidence            467788888889999999999999999764  32225678889988 999999964

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.17  E-value=9.3e-07  Score=90.55  Aligned_cols=38  Identities=34%  Similarity=0.497  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC-CCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYG   58 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~-~~G   58 (431)
                      .+|||||||||++|+.||..|++.|.+|+|+|++. .+|
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG   65 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLG   65 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccc
Confidence            46999999999999999999999999999999984 454

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.16  E-value=7.1e-07  Score=91.86  Aligned_cols=52  Identities=15%  Similarity=0.201  Sum_probs=42.8

Q ss_pred             chHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..|.++|.+.+...| .+|++++.|.+|..+  +++++||.+   .+|+  +++|+.||.
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~G~~~~i~A~~VVl  191 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence            478888888888888 999999999999987  788878753   5676  689999884

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.15  E-value=1.2e-06  Score=87.42  Aligned_cols=41  Identities=29%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-----CcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG-----KSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G-----~~V~vlE~~~~~GG~~   61 (431)
                      ..+||||||||++||+||..|++.|     .+|+|+|+++.+|...
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~   74 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHG   74 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcC
Confidence            4689999999999999999999999     9999999999998544

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.14  E-value=1.1e-06  Score=89.06  Aligned_cols=53  Identities=8%  Similarity=0.002  Sum_probs=45.0

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      -.++++.+.+..+..|.++++++.|+++...  ++. +.|++.+++++.+|.|++.
T Consensus       262 D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~--~~~-~~v~~~~~~~~~~D~vLvA  314 (542)
T 4b1b_A          262 DQQCAVKVKLYMEEQGVMFKNGILPKKLTKM--DDK-ILVEFSDKTSELYDTVLYA  314 (542)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             chhHHHHHHHHHHhhcceeecceEEEEEEec--CCe-EEEEEcCCCeEEEEEEEEc
Confidence            3578889999999999999999999999876  554 4677889999999999853

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.14  E-value=1.7e-06  Score=86.49  Aligned_cols=51  Identities=22%  Similarity=0.160  Sum_probs=40.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI~  332 (431)
                      .++.++|.+.++..|.+|+.+++| +|..+  +++++||.+. ++.++.||.||+
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~--~~~v~Gv~v~~~~g~~~a~~VVl  170 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK--DGKVTGFVTEKRGLVEDVDKLVL  170 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE--TTEEEEEEETTTEEECCCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe--CCEEEEEEEEeCCCeEEeeeEEE
Confidence            477888888887889999999999 99877  7788787653 233578999884

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.13  E-value=1.2e-06  Score=90.88  Aligned_cols=52  Identities=15%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhc-Cc-EEEeCcceeEEEEecCCC---cEEEEEe---CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVK-GC-LYVLRMPVISLLTDQNSG---SYKGVRL---ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~-Gg-~i~l~~~V~~I~~~~~~g---~~~gV~~---~~G~--~i~Ad~VI~  332 (431)
                      ..+...|.+.++.. |. +|+.++.|.+|..+  ++   +++||..   .+|+  +++|+.||.
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~--~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVl  212 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD--NNDPNAVAGAVGFSVREPKFYVFKAKAVIL  212 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC--TTCTTBEEEEEEEESSSSCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc--CCccceeEEEEEEEecCCcEEEEEcCEEEE
Confidence            35677777777777 99 99999999999886  55   8888864   4666  589999884

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.13  E-value=1.8e-06  Score=74.24  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      |||+|||||++|+.+|..|++.|.+|+++|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999987

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.11  E-value=1.1e-06  Score=95.32  Aligned_cols=42  Identities=29%  Similarity=0.377  Sum_probs=40.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+||||||+|.+||+||..|++.|++|+|+|+++++||.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            368999999999999999999999999999999999999887

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.10  E-value=1.6e-06  Score=87.94  Aligned_cols=35  Identities=23%  Similarity=0.416  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~   56 (431)
                      +||+||||+|.+|+++|.+|++ .|++|+|||+...
T Consensus        17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            6999999999999999999998 7899999999654

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.10  E-value=2e-06  Score=87.77  Aligned_cols=37  Identities=16%  Similarity=0.353  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (431)
                      .++||+||||||.+||++|.+|++.| .+|+|||+...
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            35699999999999999999999998 79999999765

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.09  E-value=2.2e-06  Score=87.41  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=34.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .+||+||||+|.+|+++|.+|+++|++|+|||+....
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4699999999999999999999999999999998754

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.06  E-value=2.1e-06  Score=87.15  Aligned_cols=52  Identities=10%  Similarity=0.180  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.++. .|++++.+ .|++|..+ +++.+++|++.+|++++||.||.
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~-~~g~~~~v~~~~g~~i~ad~vV~  227 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINN-QHGDIEKLITKQNGEISGQLFID  227 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEEC-TTSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEec-CCCcEEEEEECCCCEEEcCEEEE
Confidence            4677888888888 89999999 59999875 25666788888888899999994

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.05  E-value=3.1e-06  Score=86.29  Aligned_cols=52  Identities=25%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             chHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+++. |++++++ +|++|..+ +++.+++|++.+|++++||.||.
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~-~~g~~~~v~~~~G~~i~ad~vI~  246 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRD-ANGNIESVRTATGRVFDADLFVD  246 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEEC-TTSCEEEEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEc-CCCCEEEEEECCCCEEECCEEEE
Confidence            46888898888888 9999999 99999875 25667789988998999999994

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.05  E-value=1.7e-06  Score=86.02  Aligned_cols=42  Identities=14%  Similarity=0.143  Sum_probs=38.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-C------CCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASA-S------GKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~-~------G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+||+|||||++|+.||..|++ .      |++|+|+|+++.+||.++
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            45899999999999999999999 7      999999999999999764

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.05  E-value=3.2e-06  Score=86.31  Aligned_cols=38  Identities=24%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCC
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~   55 (431)
                      +...+||+||||||.+||++|.+|+.. |.+|+|||+..
T Consensus        15 ~~~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           15 VSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             TTTCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             cCCCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            345679999999999999999999974 89999999987

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.04  E-value=3.4e-06  Score=85.43  Aligned_cols=40  Identities=15%  Similarity=0.372  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+||+|||||++|++||.+|+++|++|+++|+  ++||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            468999999999999999999999999999996  5788765

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.04  E-value=2.6e-06  Score=85.31  Aligned_cols=51  Identities=8%  Similarity=0.090  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.++..|.+++++++|++|..   ++++..|.+ +++++.||.||+.
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~D~vi~a  277 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKG---NERVEAVET-DKGTYKADLVLVS  277 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEE---SSBEEEEEE-TTEEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEc---CCcEEEEEE-CCCEEEcCEEEEC
Confidence            46778888888999999999999999974   355666776 4568999999853

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.02  E-value=2.4e-06  Score=86.80  Aligned_cols=39  Identities=21%  Similarity=0.354  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .+||+||||+|.+|+++|.+|++ |.+|+|||+....++.
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~~   63 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTAY   63 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGGS
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCCC
Confidence            46999999999999999999999 9999999998876543

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.00  E-value=3.6e-06  Score=83.53  Aligned_cols=41  Identities=10%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (431)
                      +++||||||||++||+||..|++.  |++|+|+|+++++|+..
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~   44 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAP   44 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC---
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCC
Confidence            457999999999999999999998  88999999999887644

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.99  E-value=3e-06  Score=84.68  Aligned_cols=53  Identities=11%  Similarity=0.127  Sum_probs=44.8

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ..++.+.+.+.+++.|.+++++++|++|..+  ++++. |++++|+++.||.||+.
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~-v~~~~g~~i~aD~Vv~a  253 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGE--NGKVA-RVITDKRTLDADLVILA  253 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEE-EEEESSCEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEcc--CCeEE-EEEeCCCEEEcCEEEEC
Confidence            4578888989999999999999999999875  56644 77789999999999964

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.99  E-value=2.5e-06  Score=86.14  Aligned_cols=52  Identities=21%  Similarity=0.225  Sum_probs=44.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.++..|++++.+ +|++|..+ +++.+++|++.+|++++||.||.
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~-~~~~~~~v~~~~g~~~~ad~vV~  224 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQD-ERGWISGVHTKQHGEISGDLFVD  224 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEEC-TTSCEEEEEESSSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEc-CCCCEEEEEECCCCEEEcCEEEE
Confidence            467888888888899999999 99999875 25667789988998999999994

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.98  E-value=3.7e-06  Score=87.60  Aligned_cols=45  Identities=16%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-----CCCcEEEEccCCCC--CCcccccC
Q 014049           21 TAFDLIVIGTGLPESVISAAASA-----SGKSVLHLDPNPFY--GSHFSSLS   65 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~-----~G~~V~vlE~~~~~--GG~~~t~~   65 (431)
                      .++||+|||||++||++|+.|++     .|.+|+|+||++..  .|++..+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~~~gra~~l~   58 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQ   58 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCCCCCceeEEC
Confidence            36899999999999999999999     99999999998764  45554443

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.98  E-value=3.8e-06  Score=86.56  Aligned_cols=35  Identities=31%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ...|||+|||||.+||+||..|++.|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            34699999999999999999999999999999983

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.97  E-value=4.2e-06  Score=86.06  Aligned_cols=50  Identities=24%  Similarity=0.195  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.+++++++|++|..+  ++   +|++++|+++.||.||+.
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~---~v~~~~g~~i~~D~Vi~a  277 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN--GA---VVRLKSGSVIQTDMLILA  277 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG--GT---EEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC--CC---EEEECCCCEEEcCEEEEc
Confidence            467888888889999999999999999654  33   477789999999999964

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.97  E-value=4.5e-06  Score=91.18  Aligned_cols=41  Identities=10%  Similarity=0.200  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHF   61 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~   61 (431)
                      ..+||+|||||.+||+||..|+++|+ +|+|+|+++++||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            46899999999999999999999999 799999999999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.95  E-value=4e-06  Score=83.48  Aligned_cols=42  Identities=10%  Similarity=-0.034  Sum_probs=38.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~   62 (431)
                      ..+||+|||+|++|+.||..|++.|  ++|+|+|+++++||+++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~   48 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   48 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceee
Confidence            3479999999999999999999999  99999999999998764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.92  E-value=7.3e-06  Score=82.59  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      +.+||+||||+|.+|+++|.+|+++|++|+|+|+....+
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            457999999999999999999999999999999998765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.88  E-value=7.1e-06  Score=81.52  Aligned_cols=52  Identities=6%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      -.++++.+.+.+++.|.+++++++|++|..+  ++++ .|++++| ++.||.||+.
T Consensus       188 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v-~v~~~~g-~i~aD~Vv~A  239 (452)
T 3oc4_A          188 DKEMVAEVQKSLEKQAVIFHFEETVLGIEET--ANGI-VLETSEQ-EISCDSGIFA  239 (452)
T ss_dssp             CHHHHHHHHHHHHTTTEEEEETCCEEEEEEC--SSCE-EEEESSC-EEEESEEEEC
T ss_pred             CHHHHHHHHHHHHHcCCEEEeCCEEEEEEcc--CCeE-EEEECCC-EEEeCEEEEC
Confidence            3577888888889999999999999999865  5665 7887666 8999999953

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.85  E-value=1.2e-05  Score=79.28  Aligned_cols=53  Identities=9%  Similarity=0.041  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEE--ecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLT--DQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~--~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.+++++++|++|..  +  ++++.+|++++|+++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~v~~v~~~~G~~i~~D~Vv~a  245 (431)
T 1q1r_A          191 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTD--QQKVTAVLCEDGTRLPADLVIAG  245 (431)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTT--TCCEEEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEeccC--CCcEEEEEeCCCCEEEcCEEEEC
Confidence            46778888888999999999999999976  4  56777888999999999999964

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.84  E-value=9.4e-06  Score=80.60  Aligned_cols=53  Identities=19%  Similarity=0.205  Sum_probs=44.2

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ..++.+.+.+.+++.|.+++++++|++|..+  ++++..|.+ +|+++.||.||+.
T Consensus       190 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~v~~v~~-~g~~i~~D~vv~a  242 (452)
T 2cdu_A          190 DKEFTDILAKDYEAHGVNLVLGSKVAAFEEV--DDEIITKTL-DGKEIKSDIAILC  242 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEESSCEEEEEEE--TTEEEEEET-TSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHHCCCEEEcCCeeEEEEcC--CCeEEEEEe-CCCEEECCEEEEC
Confidence            3578888888899999999999999999865  566666765 7889999999953

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.83  E-value=8.8e-06  Score=82.87  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=35.0

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGS   59 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~GG   59 (431)
                      +||+||||+|.+|+++|.+|++ .|++|+|||+....++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~   40 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDEN   40 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccC
Confidence            5999999999999999999999 7999999999987744

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.82  E-value=1.7e-05  Score=80.02  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..+||+||||+|.+|+++|.+|+++|++|+|||+....
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            35799999999999999999999999999999998754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.81  E-value=7e-06  Score=80.36  Aligned_cols=50  Identities=14%  Similarity=0.090  Sum_probs=41.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~  335 (431)
                      ..+.+.+.+.+++.|.+++++++|++|..    +   +|++++|+++.||.||+.+.
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~----~---~v~~~~g~~~~~D~vi~a~G  267 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE----H---EIVDEKGNTIPADITILLPP  267 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS----S---EEEETTSCEEECSEEEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC----C---eEEECCCCEEeeeEEEECCC
Confidence            46778888888999999999999999842    2   36778999999999986443

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.81  E-value=1.3e-05  Score=77.75  Aligned_cols=52  Identities=17%  Similarity=0.091  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ..+.+.+.+.++..|.+++++++|++|..+  ++. +.|++++|+++.||.||+.
T Consensus       187 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~d~vv~a  238 (384)
T 2v3a_A          187 PAAAKAVQAGLEGLGVRFHLGPVLASLKKA--GEG-LEAHLSDGEVIPCDLVVSA  238 (384)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEC
Confidence            467788888888999999999999999875  443 5788889999999999964

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.77  E-value=1.5e-05  Score=79.96  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ..+.+.+.+.+++.|.++++++.|++|..+  +++ +.|++++|+++.||.||+.
T Consensus       226 ~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~--~~~-~~v~l~dG~~i~aD~Vv~a  277 (493)
T 1m6i_A          226 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  277 (493)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEec--CCe-EEEEECCCCEEECCEEEEC
Confidence            357788888889999999999999999865  454 4788899999999999964

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.77  E-value=1.3e-05  Score=80.49  Aligned_cols=51  Identities=10%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.++++++.|++|..   ++++..|++ +|+++.||.||+.
T Consensus       236 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~---~~~v~~v~~-~g~~i~~D~Vi~a  286 (490)
T 2bc0_A          236 RDLTDLMAKNMEEHGIQLAFGETVKEVAG---NGKVEKIIT-DKNEYDVDMVILA  286 (490)
T ss_dssp             HHHHHHHHHHHHTTTCEEEETCCEEEEEC---SSSCCEEEE-SSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCeEEEeCCEEEEEEc---CCcEEEEEE-CCcEEECCEEEEC
Confidence            46778888888999999999999999974   445555665 7889999999854

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.77  E-value=2e-05  Score=80.16  Aligned_cols=39  Identities=28%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~~~GG   59 (431)
                      ..||+||||+|.+|+++|.+|+++ |++|+|||+.....+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~   51 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRG   51 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCC
Confidence            469999999999999999999998 999999999987644

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.76  E-value=1.5e-05  Score=79.03  Aligned_cols=51  Identities=10%  Similarity=0.038  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.+++++++|++|..   +++++.|.+ +|+++.||.||+.
T Consensus       191 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~v~~v~~-~~~~i~~d~vi~a  241 (447)
T 1nhp_A          191 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKVVT-DKNAYDADLVVVA  241 (447)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEEEE-SSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEc---cCcEEEEEE-CCCEEECCEEEEC
Confidence            46778888888899999999999999974   344446665 6778999999853

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.75  E-value=2e-05  Score=80.76  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~   57 (431)
                      +.+||+||||+|.+|+++|.+|++ .|++|+|||+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            457999999999999999999999 89999999998765

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.73  E-value=2e-05  Score=77.18  Aligned_cols=49  Identities=22%  Similarity=0.243  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP  334 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p  334 (431)
                      .++.+.+.+.+++.|.+++++++|++|. +  +    +|++++|+++.||.||+..
T Consensus       187 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~--~----~v~~~~g~~i~~D~vi~a~  235 (408)
T 2gqw_A          187 ATLADFVARYHAAQGVDLRFERSVTGSV-D--G----VVLLDDGTRIAADMVVVGI  235 (408)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEE-T--T----EEEETTSCEEECSEEEECS
T ss_pred             HHHHHHHHHHHHHcCcEEEeCCEEEEEE-C--C----EEEECCCCEEEcCEEEECc
Confidence            3577888888899999999999999996 3  3    5777899999999999643

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.68  E-value=2.4e-05  Score=77.25  Aligned_cols=36  Identities=17%  Similarity=0.382  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~~   57 (431)
                      +.||||||||++|++||..|++   .|++|+|+|++++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4699999999999999999999   89999999999965

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=2.8e-05  Score=74.99  Aligned_cols=46  Identities=20%  Similarity=0.186  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      ++.+.+.+.+++.|.+++++++|++|.    .+   +|++++|+ +.||.||..
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~----~~---~v~~~~g~-i~~D~vi~a  229 (367)
T 1xhc_A          184 ELSNMIKDMLEETGVKFFLNSELLEAN----EE---GVLTNSGF-IEGKVKICA  229 (367)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEEC----SS---EEEETTEE-EECSCEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEE----ee---EEEECCCE-EEcCEEEEC
Confidence            677888888899999999999999985    22   46778888 999998853

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.64  E-value=3.7e-05  Score=75.26  Aligned_cols=52  Identities=12%  Similarity=0.145  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.+++.|.++++++.|++|..+   +++.+|++++|+++.||.||+.
T Consensus       185 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~---~~~~~v~~~dg~~i~aD~Vv~a  236 (410)
T 3ef6_A          185 RRIGAWLRGLLTELGVQVELGTGVVGFSGE---GQLEQVMASDGRSFVADSALIC  236 (410)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEECS---SSCCEEEETTSCEEECSEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEecc---CcEEEEEECCCCEEEcCEEEEe
Confidence            467788888888999999999999999753   3556899999999999999964

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.64  E-value=2.9e-05  Score=79.31  Aligned_cols=36  Identities=11%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~G   58 (431)
                      .||+|||||++||+||..|++.  |++|+|+|+++++|
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            5899999999999999999998  89999999999987

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.52  E-value=2.4e-05  Score=78.77  Aligned_cols=43  Identities=16%  Similarity=0.138  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .+.|||||||+|.+||++|+.|.++|...+++|+.+..|+...
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~   79 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKI   79 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCE
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcce
Confidence            3469999999999999999999998776666666666665443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.38  E-value=9.3e-05  Score=74.36  Aligned_cols=36  Identities=11%  Similarity=0.277  Sum_probs=33.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ++..|||||||.+|+.+|..|++.|++|+|+|++++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            456899999999999999999999999999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.35  E-value=0.00015  Score=70.33  Aligned_cols=39  Identities=10%  Similarity=0.243  Sum_probs=35.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      +...|+|||||++|++||..|++.|.+|+|+|++++++.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            356899999999999999999889999999999999874

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.33  E-value=0.00011  Score=71.41  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~GG~~   61 (431)
                      ..|||||||.+|++||.+|++.|.  +|+|+|++++...+.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p   43 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCY   43 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECST
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCcc
Confidence            369999999999999999998874  899999998765443

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.29  E-value=0.00015  Score=71.56  Aligned_cols=49  Identities=10%  Similarity=0.140  Sum_probs=40.4

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      -.++.+.+.+..++.|.++++++.|+++.    .+   .|++++|+++.||.||..
T Consensus       187 d~~~~~~~~~~l~~~gV~i~~~~~v~~~~----~~---~v~~~~g~~~~~D~vl~a  235 (437)
T 4eqs_A          187 DADMNQPILDELDKREIPYRLNEEINAIN----GN---EITFKSGKVEHYDMIIEG  235 (437)
T ss_dssp             CGGGGHHHHHHHHHTTCCEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             cchhHHHHHHHhhccceEEEeccEEEEec----CC---eeeecCCeEEeeeeEEEE
Confidence            35677888888899999999999999883    33   366789999999999853

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.12  E-value=0.00023  Score=69.98  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~   57 (431)
                      .|||||||++|++||..|++.|  .+|+|+|++++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            6999999999999999999876  789999999863

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.32  E-value=0.0033  Score=61.98  Aligned_cols=39  Identities=23%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..+++|||+|..|+.+|..|++.|.+|+++|+++++..+
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  187 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGV  187 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccc
Confidence            468999999999999999999999999999999987664

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.30  E-value=0.0031  Score=60.91  Aligned_cols=39  Identities=15%  Similarity=0.003  Sum_probs=36.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++..+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~  185 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ  185 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh
Confidence            479999999999999999999999999999999987653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.28  E-value=0.0057  Score=49.80  Aligned_cols=33  Identities=15%  Similarity=0.244  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      -.|+|||.|--|...|..|.+.|++|+++|++.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            479999999999999999999999999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.18  E-value=0.0049  Score=51.13  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|+|||+|.-|+..|..|++.|++|+++|++.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.10  E-value=0.0055  Score=49.44  Aligned_cols=33  Identities=18%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|||+|..|...|..|++.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999854

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.00  E-value=0.0053  Score=57.13  Aligned_cols=37  Identities=16%  Similarity=0.053  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~  182 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRA  182 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCc
Confidence            3799999999999999999999999999999988643

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.93  E-value=0.0088  Score=49.42  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...++|+|+|-.|...|..|.+.|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            3579999999999999999999999999999973

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.85  E-value=0.0062  Score=60.25  Aligned_cols=37  Identities=19%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999999875

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.84  E-value=0.0079  Score=57.91  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .+++|||+|..|+.+|..|++.|.+|+++|+++++..+.
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~  184 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGL  184 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcc
Confidence            579999999999999999999999999999999877653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.83  E-value=0.0091  Score=48.49  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..++|+|+|.-|...|..|+++|++|+++|++.
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            469999999999999999999999999999863

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.77  E-value=0.0078  Score=59.62  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  206 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.70  E-value=0.0085  Score=59.16  Aligned_cols=37  Identities=27%  Similarity=0.198  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            5899999999999999999999999999999998765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.70  E-value=0.0087  Score=59.09  Aligned_cols=37  Identities=22%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+.+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~  204 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999988654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.69  E-value=0.0084  Score=57.42  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            4799999999999999999999999999999998766

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=95.67  E-value=0.0096  Score=59.15  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  221 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999999998763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.63  E-value=0.011  Score=50.38  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhC-CCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~-G~~V~vlE~~~   55 (431)
                      ..-.|+|||+|..|...|..|.+. |++|+++|++.
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            345799999999999999999999 99999999875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.50  E-value=0.012  Score=55.03  Aligned_cols=50  Identities=10%  Similarity=0.016  Sum_probs=32.9

Q ss_pred             CccCCCCCCCCCC-CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049            7 ESELPVPPYPPIE-PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .++|+.+++.+-. .....|.|||+|.-|...|..|+++|++|++++++..
T Consensus         5 ~~~~~~~~~~~~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A            5 HHHHHHSSGLVPRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             -------------CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             ccccccccccCcccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3556665554433 2346899999999999999999999999999998764

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=95.49  E-value=0.022  Score=54.49  Aligned_cols=50  Identities=16%  Similarity=0.172  Sum_probs=37.5

Q ss_pred             CCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        10 ~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .|+.+-++-.+.++||||||||++||++|+.|+++|++|+|+|+++..+|
T Consensus         5 ~~~~~~~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A            5 HHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             ---------CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             hhhHHHhhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            34555555566679999999999999999999999999999999976555

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.47  E-value=0.014  Score=45.32  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (431)
                      ..|+|+|+|..|...+..|.+.| ++|.+++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            47999999999999999999999 9999999863

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.46  E-value=0.013  Score=56.89  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            57999999999999999999999999999999987664

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.44  E-value=0.012  Score=57.94  Aligned_cols=37  Identities=11%  Similarity=0.045  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  204 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP  204 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh
Confidence            4799999999999999999999999999999988754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.42  E-value=0.012  Score=54.65  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeecccccc
Confidence            47999999999999999999999999999987653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.35  E-value=0.016  Score=53.27  Aligned_cols=36  Identities=28%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +...|.|||+|.-|...|..|+++|++|+++|++..
T Consensus         3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            335799999999999999999999999999998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.19  E-value=0.016  Score=57.28  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~  203 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc
Confidence            4799999999999999999999999999999988754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.07  E-value=0.012  Score=58.47  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=34.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            5799999999999999999999999999999988766

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.01  E-value=0.02  Score=53.42  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.|.|||||.-|..-|..++.+|++|+++|.++.
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.00  E-value=0.02  Score=54.50  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=32.2

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ++|++...|.|||.|.-|...|..|+++|++|.+++++.
T Consensus        17 ~~Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           17 NLYFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhhhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            456666789999999999999999999999999999874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.98  E-value=0.024  Score=55.31  Aligned_cols=35  Identities=29%  Similarity=0.358  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+..+.|||.|..||..|+.|+++|++|+.+|-+.
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            34579999999999999999999999999999874

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=94.97  E-value=0.02  Score=57.08  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            4799999999999999999999999999999998765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.96  E-value=0.025  Score=52.53  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=94.96  E-value=0.022  Score=56.45  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            4799999999999999999999999999999998765

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.90  E-value=0.022  Score=56.30  Aligned_cols=37  Identities=16%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  208 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP  208 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=94.90  E-value=0.025  Score=56.46  Aligned_cols=38  Identities=18%  Similarity=0.112  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            57999999999999999999999999999999998654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=94.88  E-value=0.065  Score=51.46  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=35.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .++||||||||++||++|+.|+++|++|+||||++..+
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            35899999999999999999999999999999998765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.87  E-value=0.018  Score=57.19  Aligned_cols=37  Identities=16%  Similarity=0.108  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  222 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ  222 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            4799999999999999999999999999999998764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.86  E-value=0.029  Score=55.05  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=32.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|...|..|+++|++|+++|++..
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4699999999999999999999999999999876

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.85  E-value=0.026  Score=53.16  Aligned_cols=38  Identities=13%  Similarity=0.168  Sum_probs=33.1

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      +......|.|||||-.|.+.|..|+++|+ +|.++|.+.
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            33334689999999999999999999998 999999975

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=94.84  E-value=0.024  Score=55.07  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  181 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR  181 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchh
Confidence            47999999999999999999999999999999987644

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.81  E-value=0.024  Score=45.78  Aligned_cols=33  Identities=30%  Similarity=0.316  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|+|..|...|..|.+.|++|.++|++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            359999999999999999999999999999863

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=94.80  E-value=0.058  Score=51.23  Aligned_cols=42  Identities=31%  Similarity=0.350  Sum_probs=37.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++||||||||++||++|+.|+++|++|+|+|+++..+|...+
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~~~~   43 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSH   43 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCCCC
Confidence            489999999999999999999999999999999988765443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.78  E-value=0.032  Score=56.37  Aligned_cols=35  Identities=17%  Similarity=0.160  Sum_probs=32.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            35799999999999999999999999999999876

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.78  E-value=0.027  Score=55.52  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|.|||.|.+|+++|..|++.|++|++.|+++.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            35799999999999999999999999999999763

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.73  E-value=0.028  Score=55.24  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      +++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            8999999999999999999999999999999987665

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.72  E-value=0.036  Score=54.75  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            469999999999999999999999999999875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.71  E-value=0.028  Score=50.42  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ......|.|||+|.-|...|..|+++|++|++++++.
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3445679999999999999999999999999999874

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=94.68  E-value=0.077  Score=46.96  Aligned_cols=51  Identities=18%  Similarity=0.064  Sum_probs=42.1

Q ss_pred             chHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.++.. |.+++ +++|++|..+  ++++++|++.+|++++||.||.
T Consensus        68 ~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~--~~~v~~v~~~~g~~i~a~~VV~  119 (232)
T 2cul_A           68 WAFHARAKYLLEGLRPLHLF-QATATGLLLE--GNRVVGVRTWEGPPARGEKVVL  119 (232)
T ss_dssp             HHHHHHHHHHHHTCTTEEEE-ECCEEEEEEE--TTEEEEEEETTSCCEECSEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEe--CCEEEEEEECCCCEEECCEEEE
Confidence            36667777878876 88887 6899999887  6777789888998999999995

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.63  E-value=0.019  Score=56.74  Aligned_cols=37  Identities=19%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            4799999999999999999999999999999998765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.63  E-value=0.026  Score=53.60  Aligned_cols=36  Identities=11%  Similarity=0.048  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|.+|+-+|..|++.|.+|+++|+++.+.
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~  202 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLN  202 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC-----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCC
Confidence            379999999999999999999999999999988765

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.58  E-value=0.03  Score=51.78  Aligned_cols=36  Identities=14%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  179 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR  179 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC
Confidence            579999999999999999999999999999998873

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=94.58  E-value=0.029  Score=55.72  Aligned_cols=37  Identities=11%  Similarity=0.073  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  222 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR  222 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc
Confidence            4799999999999999999999999999999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.55  E-value=0.026  Score=49.54  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|+|||+|--|...|..|.++|++|+++|++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            58999999999999999999999999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.54  E-value=0.033  Score=52.97  Aligned_cols=35  Identities=11%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ....|.|||+|.-|.+.|..|+++|++|.++++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34689999999999999999999999999999864

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.53  E-value=0.03  Score=55.60  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.51  E-value=0.031  Score=53.02  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|.|||+|..|...|..|+++|++|++++++.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3579999999999999999999999999999863

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.49  E-value=0.031  Score=55.89  Aligned_cols=37  Identities=8%  Similarity=0.020  Sum_probs=34.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR  213 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc
Confidence            4799999999999999999999999999999998764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.46  E-value=0.037  Score=53.54  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=35.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++..+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc
Confidence            469999999999999999999999999999999886654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.36  E-value=0.043  Score=47.89  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|.+.|..|+++|++|.+++++..
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999998876

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.35  E-value=0.034  Score=51.37  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            47999999999999999999999999999999887

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=94.34  E-value=0.037  Score=54.73  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  213 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR  213 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC
Confidence            4799999999999999999999999999999988654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.34  E-value=0.03  Score=54.90  Aligned_cols=38  Identities=11%  Similarity=0.135  Sum_probs=35.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .++|||+|..|+-.|..|++.|.+|+++|+.+++....
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~  186 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM  186 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTS
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccccccc
Confidence            79999999999999999999999999999999876543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.34  E-value=0.038  Score=55.83  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ...|+|||+|.+|+-+|..|++.|.+|+|+++.+++
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            457999999999999999999999999999998763

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.30  E-value=0.042  Score=53.39  Aligned_cols=39  Identities=23%  Similarity=0.203  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+.
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~  191 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV  191 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhh
Confidence            469999999999999999999999999999999886543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=94.29  E-value=0.038  Score=54.67  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP  211 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc
Confidence            4799999999999999999999999999999998765

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.26  E-value=0.038  Score=51.78  Aligned_cols=40  Identities=15%  Similarity=0.265  Sum_probs=31.8

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCC----CcEEEEccCC
Q 014049           16 PPIEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNP   55 (431)
Q Consensus        16 ~~~~~~~~DviIIGaGl~GL~aA~~La~~G----~~V~vlE~~~   55 (431)
                      |+++++...|.|||+|.-|...|..|+++|    ++|.+++++.
T Consensus        16 ~~~~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           16 ENLYFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             ------CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             chhccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            456666678999999999999999999999    8999999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.26  E-value=0.039  Score=51.99  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..|.|||+|--|.+.|..|+++|++|++++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            47999999999999999999999999999975

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.22  E-value=0.037  Score=54.69  Aligned_cols=37  Identities=11%  Similarity=0.037  Sum_probs=33.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|.+|+-.|..|++.|.+|+++++++.+-+
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~  234 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMG  234 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCC
Confidence            4799999999999999999999999999999877533

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=94.18  E-value=0.088  Score=50.24  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=35.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ++||||||||++|+++|+.|+++|++|+|+|+++..+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            5899999999999999999999999999999998766

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.15  E-value=0.043  Score=51.33  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|--|.+.|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            469999999999999999999999999999975

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=94.14  E-value=0.11  Score=50.68  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYG   58 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~G   58 (431)
                      .+||||||||++|++||..|++.|+  +|+++|+++..+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC
Confidence            5899999999999999999999999  799999998765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=94.14  E-value=0.04  Score=51.46  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~  195 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFR  195 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCC
Confidence            479999999999999999999999999999998763

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.13  E-value=0.047  Score=50.00  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||+|..|...|..|+++|++|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            589999999999999999999999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.10  E-value=0.041  Score=55.63  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=33.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ...|+|||+|.+|+-+|..|++.|.+|+|+++.+++
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            457999999999999999999999999999998763

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.08  E-value=0.046  Score=50.72  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|.|||+|.-|...|..|+++|++|++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.07  E-value=0.043  Score=51.13  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  188 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLR  188 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCC
Confidence            479999999999999999999999999999998764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.07  E-value=0.047  Score=53.56  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...+.|||+|.-|+..|..|+++|++|++++++..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46789999999999999999999999999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.06  E-value=0.044  Score=51.09  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|--|.+.|..|+++|++|+++.++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            469999999999999999999999999999875

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=94.06  E-value=0.042  Score=50.95  Aligned_cols=36  Identities=17%  Similarity=0.074  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~  181 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR  181 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc
Confidence            479999999999999999999999999999998763

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.05  E-value=0.045  Score=50.76  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            369999999999999999999999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.02  E-value=0.043  Score=51.41  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=33.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-.|..|++.|.+|+++++++++.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~  191 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFR  191 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCC
Confidence            579999999999999999999999999999998763

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.98  E-value=0.036  Score=54.36  Aligned_cols=37  Identities=19%  Similarity=0.142  Sum_probs=33.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|.|||.|.+|+++|..|+++|++|++.|++...=|
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~   42 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG   42 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch
Confidence            4699999999999999999999999999999876533

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.97  E-value=0.053  Score=53.61  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=32.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-CC-cEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~-G~-~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|+..|..|+++ |+ +|+++|++..
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4799999999999999999999 99 9999999876

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.94  E-value=0.046  Score=53.64  Aligned_cols=35  Identities=9%  Similarity=0.004  Sum_probs=32.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~   57 (431)
                      .+|+|||+|.+|+-.|..|++.|.+ |+++++.+.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            4799999999999999999999999 9999998876

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.91  E-value=0.043  Score=51.30  Aligned_cols=37  Identities=8%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~  189 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc
Confidence            4799999999999999999999999999999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=93.89  E-value=0.048  Score=55.28  Aligned_cols=36  Identities=14%  Similarity=0.084  Sum_probs=33.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            799999999999999999999999999999987654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=93.88  E-value=0.048  Score=54.28  Aligned_cols=38  Identities=16%  Similarity=0.110  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  236 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG  236 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc
Confidence            47999999999999999999999999999999987653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.87  E-value=0.048  Score=53.60  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            379999999999999999999999999999875

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.81  E-value=0.05  Score=50.28  Aligned_cols=35  Identities=17%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|.|||.|.-|...|..|+++|++|++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45799999999999999999999999999998875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=93.76  E-value=0.083  Score=52.16  Aligned_cols=39  Identities=15%  Similarity=0.107  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++....
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~  211 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITL  211 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCC
Confidence            479999999999999999999999999999999876543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=93.76  E-value=0.16  Score=50.65  Aligned_cols=34  Identities=12%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~   56 (431)
                      +||||||||++|+++|+.|++   +|.+|+|+|+.+.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            799999999999999999999   9999999999864

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=93.76  E-value=0.13  Score=50.52  Aligned_cols=37  Identities=27%  Similarity=0.541  Sum_probs=34.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .++||||||||++||+||..|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            4689999999999999999999999999999999864

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=93.76  E-value=0.14  Score=51.61  Aligned_cols=37  Identities=8%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~   56 (431)
                      +..+||||||||++|+++|+.|++   +|.+|+|+|+.+.
T Consensus        23 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           23 GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            346899999999999999999999   9999999999764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.72  E-value=0.056  Score=53.55  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|..|+-.|..|++.|.+|+++++.+++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  224 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR  224 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc
Confidence            5799999999999999999999999999999988653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.66  E-value=0.065  Score=47.21  Aligned_cols=35  Identities=14%  Similarity=0.217  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      .+...|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            44578999999999999999999999999999874

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.64  E-value=0.048  Score=50.85  Aligned_cols=49  Identities=20%  Similarity=0.116  Sum_probs=31.0

Q ss_pred             CccCCCCC-CCCCC-CCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049            7 ESELPVPP-YPPIE-PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus         7 ~~~~~~~~-~~~~~-~~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      |+-|+.+. ++.++ +....|.|||+|.-|...|..|+++|+ +|++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A            7 HSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             ------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             cccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            45565432 33332 224579999999999999999999999 999999973

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.62  E-value=0.088  Score=48.67  Aligned_cols=48  Identities=19%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             CCCCccCCCCCCCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049            4 NESESELPVPPYPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ++.+.+|... .| +   ...|.||| +|.-|.+.|..|+++|++|.+++++..
T Consensus         8 ~~~~~~~~~~-~~-~---~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A            8 NENQFGFKTI-NS-D---IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             -----CCCCS-CT-T---CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             hhhccCcccc-CC-C---CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4555667422 12 1   23699999 999999999999999999999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.61  E-value=0.054  Score=50.30  Aligned_cols=36  Identities=22%  Similarity=0.260  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-.|..|++.|.+|+++++.+++.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~  191 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYM  191 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccC
Confidence            479999999999999999999999999999988764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=93.58  E-value=0.14  Score=52.03  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=36.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .++||||||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~Gt   70 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGT   70 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            4689999999999999999999999999999999876663

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=93.53  E-value=0.044  Score=53.94  Aligned_cols=36  Identities=11%  Similarity=0.075  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~   57 (431)
                      ...|+|||+|.+|+-+|..|++.  |.+|+++++++.+
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45899999999999999999999  9999999998764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=93.53  E-value=0.12  Score=49.63  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            3589999999999999999999999999999998765

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=93.47  E-value=0.059  Score=52.81  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|..|+..|..|+++|++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999999864

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=93.43  E-value=0.19  Score=50.04  Aligned_cols=44  Identities=32%  Similarity=0.359  Sum_probs=39.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh-CCCcEEEEc--------cCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE--------~~~~~GG~~~t   63 (431)
                      ..+|||+|||||.+|++||..|++ .|++|+|+|        +++.+||.|..
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~   57 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVN   57 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHH
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeec
Confidence            346999999999999999999999 999999999        46789997754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=93.42  E-value=0.18  Score=50.10  Aligned_cols=43  Identities=28%  Similarity=0.333  Sum_probs=38.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCcEEEEc--------cCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASA-SGKSVLHLD--------PNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE--------~~~~~GG~~~t   63 (431)
                      .+|||+|||||.+|++||..|++ .|++|+|+|        +++.+||.|..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            46999999999999999999999 999999999        46789997654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=93.42  E-value=0.068  Score=53.69  Aligned_cols=38  Identities=13%  Similarity=0.095  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~  252 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI  252 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc
Confidence            57999999999999999999999999999999987653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=93.40  E-value=0.04  Score=48.54  Aligned_cols=36  Identities=17%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEE-EccCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLH-LDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~v-lE~~~   55 (431)
                      |....|.|||+|.-|.+.|..|+++|++|++ ++++.
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~   57 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGP   57 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCG
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCH
Confidence            3346899999999999999999999999998 87764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.39  E-value=0.064  Score=49.97  Aligned_cols=37  Identities=22%  Similarity=0.168  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~  210 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA  210 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC
Confidence            4699999999999999999999999999999988754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=93.39  E-value=0.16  Score=50.05  Aligned_cols=37  Identities=14%  Similarity=0.048  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~G   58 (431)
                      ++||+|||||++||+||..|++.  |++|+|+|+++.+|
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            47999999999999999999999  99999999999976

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=93.38  E-value=0.07  Score=49.17  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +..|.|||+|.-|..-|..|+ +|++|+++|++.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            568999999999999999999 999999999875

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.36  E-value=0.072  Score=52.84  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|.|||+|.-|...|..|+++|++|+++|++..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            34799999999999999999999999999998753

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=93.23  E-value=0.23  Score=48.64  Aligned_cols=37  Identities=16%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG   59 (431)
                      +||||||||.+|++||..|++.  |++|+|+|+++.+|.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~   39 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc
Confidence            5899999999999999999998  999999999997664

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.23  E-value=0.074  Score=47.03  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|+|.|| |.-|...|..|.++|++|.++.++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            457999998 9999999999999999999998864

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.20  E-value=0.071  Score=50.45  Aligned_cols=37  Identities=11%  Similarity=0.115  Sum_probs=34.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+.+.+
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~  200 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG  200 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC
Confidence            4799999999999999999999999999999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=93.20  E-value=0.075  Score=52.56  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  217 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP  217 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            4799999999999999999999999999999998765

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=93.19  E-value=0.19  Score=51.16  Aligned_cols=53  Identities=19%  Similarity=0.274  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC------C---------cEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS------G---------QDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~------G---------~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+++.|++|+++++|++|..+ +++++++|++.+      |         .+++||.||.
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~-~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~  211 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFH-EDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIF  211 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEC-TTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEE
Confidence            478888988888899999999999999886 246778888763      3         6899999994

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.19  E-value=0.075  Score=49.64  Aligned_cols=33  Identities=15%  Similarity=0.413  Sum_probs=29.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|.|||+|--|.+.|..|+++|++|+++ ++.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            457999999999999999999999999999 654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.18  E-value=0.17  Score=48.79  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=35.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .++||||||||++||++|+.|+++|++|+|+|+++.++
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~   41 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR   41 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            45999999999999999999999999999999997543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.14  E-value=0.097  Score=48.71  Aligned_cols=34  Identities=21%  Similarity=0.149  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|...|..|+++|++|.+++++..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.11  E-value=0.058  Score=49.76  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|--|.+.|..|+++|++|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            469999999999999999999999999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.11  E-value=0.082  Score=50.84  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.|+|||+|..|+.+|..|...|.+|+++|++..
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            5799999999999999999999999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=93.09  E-value=0.077  Score=51.65  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|.-|+..|..|++ |++|+++|++..
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            579999999999999999998 999999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.08  E-value=0.088  Score=53.65  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=35.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            47999999999999999999999999999999987654

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.08  E-value=0.071  Score=54.48  Aligned_cols=32  Identities=16%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            37999999999999999999999999999987

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.04  E-value=0.047  Score=49.69  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +...|+|||+|-.|+..|..|.++|.+|+|++.+..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            456799999999999999999999999999998653

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=93.02  E-value=0.21  Score=49.48  Aligned_cols=42  Identities=31%  Similarity=0.296  Sum_probs=39.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||+|||||++||+||..|+++|++|+|+|+ +.+||.|..
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   66 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCVI   66 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCceec
Confidence            479999999999999999999999999999999 789997664

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.01  E-value=0.084  Score=49.29  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            479999999999999999999998 999999875

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=92.97  E-value=0.25  Score=49.05  Aligned_cols=39  Identities=23%  Similarity=0.394  Sum_probs=35.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYG   58 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~G   58 (431)
                      +.++||||||||++|++||..|+++  |.+|+|+|+++++|
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            4579999999999999999999887  89999999998876

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=92.90  E-value=0.098  Score=45.77  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..+.|||+|..|...|..|+++|++|.+++++.
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999998863

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.90  E-value=0.09  Score=49.44  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..|.|||+|--|.+.|..|+++|++|++++++
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            57999999999999999999999999999886

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=92.90  E-value=0.067  Score=53.69  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+++.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            479999999999999999999999999999998875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.88  E-value=0.059  Score=53.18  Aligned_cols=35  Identities=14%  Similarity=0.312  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+.|||+|+|-.|...|..|+..|++|+|+|++..
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999853

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=92.87  E-value=0.089  Score=48.26  Aligned_cols=33  Identities=24%  Similarity=0.288  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            689999999999999999999999999998754

>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.84  E-value=0.043  Score=43.86  Aligned_cols=52  Identities=4%  Similarity=-0.045  Sum_probs=40.4

Q ss_pred             cEEEeCEEEEC-CCCCCCCCCCCchhhhhhhhhhhcccCCCCeEEEEEEEeCCCC
Q 014049          323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL  376 (431)
Q Consensus       323 ~~i~Ad~VI~~-p~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~  376 (431)
                      ++++||+||++ |..++..  +.++|+||..+....+...++...|.++.++++|
T Consensus         4 ~~~~Ad~VIvTvP~~vL~~--I~F~P~LP~~k~~Ai~~l~~g~~~Kv~l~f~~~F   56 (130)
T 2e1m_B            4 QTWTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRW   56 (130)
T ss_dssp             EEEEESEEEECSCHHHHTT--SEEESCCCHHHHHHHHHCCEECEEEEEEEESSCG
T ss_pred             eEEEcCEEEEcCCHHHHhc--CcCCCCCCHHHHHHHHhCCCcceeEEEEEECCCC
Confidence            57899999986 4444444  3577889988777666667999999999999986

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.82  E-value=0.11  Score=48.50  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (431)
                      ++|....|.|||+|..|...|..|+++|+ +|.++|.+
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            34455689999999999999999999999 99999997

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=92.82  E-value=0.1  Score=48.81  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|++|++++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999999874

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=92.78  E-value=0.28  Score=41.07  Aligned_cols=50  Identities=20%  Similarity=0.074  Sum_probs=41.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+.++..|.+++++ +|++|..+  ++. +.|++++| ++.||.||..
T Consensus        56 ~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~--~~~-~~v~~~~g-~i~ad~vI~A  105 (180)
T 2ywl_A           56 EELLRRLEAHARRYGAEVRPG-VVKGVRDM--GGV-FEVETEEG-VEKAERLLLC  105 (180)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CCCEEEEC--SSS-EEEECSSC-EEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEeC-EEEEEEEc--CCE-EEEEECCC-EEEECEEEEC
Confidence            467788888888999999999 99999875  343 57887788 8999999964

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.77  E-value=0.11  Score=48.80  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHH-HHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||.|-+|++ +|..|.+.|++|.+.|+++.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            46899999999996 78899999999999999875

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=92.75  E-value=0.088  Score=51.26  Aligned_cols=34  Identities=29%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -..-|||.|.-|+..|..|+++|++|+++|.+..
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3678999999999999999999999999998864

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.75  E-value=0.071  Score=50.83  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|.-|...|..|+++|++|++++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999998863

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.72  E-value=0.12  Score=48.10  Aligned_cols=33  Identities=21%  Similarity=0.439  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      ..|.|||+|.-|.+.|..|+++|+  +|.+++++.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            479999999999999999999999  999999876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.72  E-value=0.11  Score=47.30  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|+|.|||.-|...+..|.++|++|.++.++..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4699999999999999999999999999998754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=92.69  E-value=0.25  Score=49.18  Aligned_cols=39  Identities=38%  Similarity=0.497  Sum_probs=35.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      +++||+|||||++|+++|+.|+++|++|+|+|+++..+|
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~g   40 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACA   40 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999975444

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=92.69  E-value=0.22  Score=49.03  Aligned_cols=42  Identities=31%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||+|||||++||+||..|+++|++|+|+|+ +.+||.|..
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~~   45 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCVI   45 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCcccc
Confidence            369999999999999999999999999999999 789997653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=92.63  E-value=0.067  Score=51.75  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=41.5

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCccee---------EEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVI---------SLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~---------~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+.+..|.   ..+.++|.+.+++.|++++.+++|+         +|..+  ++++ +|++.+| +++||.||..
T Consensus       161 ~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~--~~~v-~v~~~~g-~i~a~~VV~A  231 (405)
T 3c4n_A          161 RVDPRALTYRPGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT--NTHQ-IVVHETR-QIRAGVIIVA  231 (405)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC----------CBCCE-EEEEEEEEEC
T ss_pred             EEcCCCEEEcHHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee--CCeE-EEEECCc-EEECCEEEEC
Confidence            44555553   5688999999999999999999999         88765  5554 7876666 7999998853

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=92.56  E-value=0.1  Score=48.16  Aligned_cols=37  Identities=16%  Similarity=0.090  Sum_probs=34.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~  191 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA  191 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc
Confidence            4799999999999999999999999999999988765

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=92.55  E-value=0.26  Score=49.15  Aligned_cols=52  Identities=23%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe--CCCc--EEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~--~~G~--~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+++.|++|+++++|++|..+  ++++++|++  .+|+  +++||.||.
T Consensus       111 ~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~--~~~v~gv~~~~~dG~~~~i~ad~VI~  166 (512)
T 3e1t_A          111 ARFDDMLLRNSERKGVDVRERHEVIDVLFE--GERAVGVRYRNTEGVELMAHARFIVD  166 (512)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--TTEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEE--CCEEEEEEEEeCCCCEEEEEcCEEEE
Confidence            467788888888899999999999999987  777766665  3574  799999994

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.54  E-value=0.13  Score=47.71  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||.|.-|...|..|+++|++|++++++.
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999875

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=92.53  E-value=0.053  Score=48.03  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=30.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..|.|||+|.-|.+.|..|+++|++|..+++.
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            47999999999999999999999999999985

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.53  E-value=0.1  Score=51.69  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      |.+.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            456789999999999999999999999999999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.53  E-value=0.12  Score=48.23  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+.+|+ +|.++|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            479999999999999999999998 999999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.47  E-value=0.086  Score=48.36  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||+|.-|...|..|+++|++|++++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            689999999999999999999999999998764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.45  E-value=0.11  Score=48.37  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      ..|.|||+|-.|...|..|+++|+  +|.++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999999  999999874

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.42  E-value=0.079  Score=49.20  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhC-----C-CcEEEEcc
Q 014049           23 FDLIVIGTGLPESVISAAASAS-----G-KSVLHLDP   53 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~-----G-~~V~vlE~   53 (431)
                      ..|.|||+|.-|...|..|+++     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4799999999999999999999     9 99999987

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.40  E-value=0.097  Score=51.73  Aligned_cols=33  Identities=18%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|+..|..|+++  |++|++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  89999999864

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.40  E-value=0.12  Score=50.98  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=32.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~   57 (431)
                      ..+|+|||+|..|+-+|..|.+.|. +|++++++++.
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3579999999999999999999997 59999998865

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=92.37  E-value=0.3  Score=48.51  Aligned_cols=42  Identities=17%  Similarity=0.167  Sum_probs=38.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhC---CCcEEEEccCCCCCCccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS---GKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~---G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +|||||||||++|++||..|++.   |++|+|+|+++ +||.|...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~   46 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLD   46 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCc
Confidence            48999999999999999999999   99999999999 99976543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.32  E-value=0.089  Score=50.14  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999885

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=92.29  E-value=0.29  Score=49.12  Aligned_cols=38  Identities=5%  Similarity=0.161  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhh---CCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASA---SGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~---~G~~V~vlE~~~~~   57 (431)
                      +..+||||||||++|+++|+.|++   +|.+|+|+|+.+..
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            346899999999999999999999   99999999997644

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.28  E-value=0.073  Score=50.41  Aligned_cols=35  Identities=14%  Similarity=0.080  Sum_probs=32.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC-------CcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G-------~~V~vlE~~~~   56 (431)
                      ...|.|||+|.-|.+.|..|+++|       ++|.+++++..
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            357999999999999999999999       99999999876

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=92.26  E-value=0.29  Score=49.90  Aligned_cols=51  Identities=12%  Similarity=0.188  Sum_probs=43.6

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.++|.+.++. .|.+| +++.|+.|..+  ++++++|++.+|+++.||.||+
T Consensus       123 ~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e--~g~V~GV~t~dG~~i~AdaVVL  174 (637)
T 2zxi_A          123 KRYREYMKKVCENQENLYI-KQEEVVDIIVK--NNQVVGVRTNLGVEYKTKAVVV  174 (637)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EESCEEEEEES--SSBEEEEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEeEEEEEEec--CCEEEEEEECCCcEEEeCEEEE
Confidence            4678888888877 58888 68999999887  7888899999999999999885

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.22  E-value=0.12  Score=47.55  Aligned_cols=35  Identities=9%  Similarity=0.060  Sum_probs=33.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            47999999999999999999999999999999887

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.20  E-value=0.068  Score=43.40  Aligned_cols=33  Identities=21%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|++.|.+|.+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            469999999999999999999999999999863

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=92.18  E-value=0.33  Score=49.38  Aligned_cols=42  Identities=29%  Similarity=0.244  Sum_probs=37.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +.++||||||+|++||+||+.|+++|.+|+||||+...||..
T Consensus         5 ~~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~s   46 (588)
T 2wdq_A            5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (588)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence            346899999999999999999999999999999998876644

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.17  E-value=0.13  Score=44.68  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.5

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.||| +|..|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            489999 99999999999999999999999863

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.17  E-value=0.14  Score=50.82  Aligned_cols=33  Identities=9%  Similarity=0.015  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      -.++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            469999999999999999999999999999865

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=92.17  E-value=0.32  Score=50.24  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +.++||||||+|++||+||+.|+++|.+|+||||....||.+
T Consensus         3 ~~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~s   44 (660)
T 2bs2_A            3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (660)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             cccccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence            346899999999999999999999999999999998776544

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=92.14  E-value=0.27  Score=50.42  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +.++||||||||++||+||+.|+++|.+|+||||....||.+
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s   57 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHT   57 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGG
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            346899999999999999999999999999999988766643

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.13  E-value=0.14  Score=50.64  Aligned_cols=34  Identities=15%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +.+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999999999999999999999875

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=92.13  E-value=0.11  Score=50.28  Aligned_cols=31  Identities=23%  Similarity=0.264  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|..|+..|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            58999999999999999999 99999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.11  E-value=0.13  Score=49.90  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|||||.|-.|...|..|.+.|++|+++|++..
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4699999999999999999999999999999854

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=92.09  E-value=0.14  Score=51.22  Aligned_cols=32  Identities=13%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      -.++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            36999999999999999999999999999985

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.07  E-value=0.16  Score=47.35  Aligned_cols=49  Identities=12%  Similarity=0.093  Sum_probs=34.4

Q ss_pred             CccCCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049            7 ESELPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus         7 ~~~~~~~~~~~~~~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+.-+.++.++.......|+|.|| |.-|...+..|+++|++|.++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A            5 HHHHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             ---------CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             ccccccccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            344445555555555567999997 9999999999999999999999854

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.05  E-value=0.13  Score=47.67  Aligned_cols=32  Identities=16%  Similarity=0.082  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|--|.+.|..|+ +|++|+++.++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999875

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=92.05  E-value=0.35  Score=46.63  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=46.4

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecC--CCcEEEEEeCCCcEEEeCEEEE
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN--SGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~--~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+|..-...+.+.|.+.++..|++|+++++|++|..+++  +++ +.|++.+| +++||.||+
T Consensus       101 ~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVl  162 (401)
T 2gqf_A          101 QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIV  162 (401)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEE
T ss_pred             EEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEE
Confidence            3566555678889999999999999999999999986410  133 57877666 799999885

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.05  E-value=0.099  Score=48.96  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (431)
                      .|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            589999999999999999999999999998

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=91.97  E-value=0.14  Score=47.54  Aligned_cols=37  Identities=11%  Similarity=0.090  Sum_probs=34.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++.+++.+
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~  191 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA  191 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc
Confidence            4799999999999999999999999999999988743

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.96  E-value=0.15  Score=47.75  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ..|.|||||..|...|..|+++|+ +|.++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999999 999999975

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=91.89  E-value=0.25  Score=50.36  Aligned_cols=52  Identities=13%  Similarity=0.104  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CC--cEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SG--QDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G--~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.++..|++++.+++|++|..+  ++..++|++. +|  ++++||.||.
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~--~g~~~~V~~~~~G~~~~i~AdlVV~  182 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS--DPDRVVLTVRRGGESVTVESDFVID  182 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC--STTCEEEEEEETTEEEEEEESEEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCCEEEEEEecCCceEEEEcCEEEE
Confidence            467888888888899999999999999876  5666788877 67  5799999994

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=91.88  E-value=0.14  Score=47.12  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|++|.+++++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.87  E-value=0.17  Score=47.72  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||.|.-|.+.|..|+++|++|.+++++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999875

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=91.80  E-value=0.44  Score=47.68  Aligned_cols=37  Identities=11%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             CcccEEEECCChhHHHHHHHHhh------------CCCcEEEEccCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASA------------SGKSVLHLDPNPFY   57 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~------------~G~~V~vlE~~~~~   57 (431)
                      ..+||||||||++|+++|+.|++            +|.+|+|+|+.+.+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~   54 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVA   54 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCC
Confidence            35899999999999999999999            99999999997653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.80  E-value=0.14  Score=50.76  Aligned_cols=33  Identities=18%  Similarity=0.228  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|+..|..|+++  |++|+++|++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            4799999999999999999999  79999999763

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.80  E-value=0.15  Score=47.25  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      .|.|||+|..|...|..|+.+|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            58999999999999999999999  999999874

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=91.77  E-value=0.4  Score=46.93  Aligned_cols=37  Identities=14%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG   59 (431)
                      +||||||||++||+||..|++.  |++|+|+|+++++|.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~   41 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGY   41 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcc
Confidence            5999999999999999999998  999999999999883

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=91.71  E-value=0.22  Score=47.63  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=42.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe-CCCc--EEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASGQ--DILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~-~~G~--~i~Ad~VI-~~p~  335 (431)
                      ..+.+.|.+.+...|++|+++++|++|..+  ++..+.|++ .+|+  +++||.|| ++..
T Consensus       103 ~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~--~~~~~~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A          103 TEVTRDLMEAREACGATTVYQAAEVRLHDL--QGERPYVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECT--TSSSCEEEEEETTEEEEEECSEEEECCCT
T ss_pred             HHHHHHHHHHHHhcCCeEEeceeEEEEEEe--cCCceEEEEecCCcEEEEEeCEEEECCCC
Confidence            467788888888889999999999999864  222245766 6887  79999999 4443

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=91.63  E-value=0.16  Score=45.72  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCC----CcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G----~~V~vlE~~~~   56 (431)
                      ...|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            347999999999999999999999    79999998865

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=91.59  E-value=0.15  Score=46.32  Aligned_cols=33  Identities=9%  Similarity=-0.088  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|+|||+|..|+-+|..|++.| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            57999999999999999999999 9999998876

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.58  E-value=0.25  Score=45.48  Aligned_cols=52  Identities=17%  Similarity=0.057  Sum_probs=32.9

Q ss_pred             CCCCccCCCCCCCCCCCCcccEEEECCC---hhHHHHHHHHhhCCCcEEEEccCC
Q 014049            4 NESESELPVPPYPPIEPTAFDLIVIGTG---LPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~DviIIGaG---l~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ||.++.=|.+--+.+..+..-++|.||+   --|...|..|+++|++|.++.++.
T Consensus        12 ~~~~~~gp~sm~~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           12 LEAQTQGPGSMRTGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             ---------CCCCCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ceecccCCccccchhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3444444444333333444568899985   678999999999999999998874

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=91.48  E-value=0.42  Score=43.55  Aligned_cols=53  Identities=8%  Similarity=0.050  Sum_probs=41.3

Q ss_pred             cchHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeC---------CC-----cEEEeCEEEE
Q 014049          278 QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLA---------SG-----QDILSHKLVL  332 (431)
Q Consensus       278 ~~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~---------~G-----~~i~Ad~VI~  332 (431)
                      ..++.+.|.+.+.+ .|.+++++++|++|..+  ++++.+|++.         +|     ++++||.||.
T Consensus       118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~--~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~  185 (284)
T 1rp0_A          118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVS  185 (284)
T ss_dssp             HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEE--TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEec--CCeEEEEEEeccccccccCccccCceEEEECCEEEE
Confidence            35677777777765 69999999999999987  6777788763         32     5799999985

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=91.45  E-value=0.41  Score=47.65  Aligned_cols=54  Identities=19%  Similarity=0.100  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc---EEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~---~i~Ad~VI-~~p~  335 (431)
                      ..+-+.|.+.+++.|++|+++++|++|..+  ++. +.|++.+|+   +++||.|| ++..
T Consensus       106 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgADG~  163 (500)
T 2qa1_A          106 SVTETHLEQWATGLGADIRRGHEVLSLTDD--GAG-VTVEVRGPEGKHTLRAAYLVGCDGG  163 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCEEEEEEEE--TTE-EEEEEEETTEEEEEEESEEEECCCT
T ss_pred             HHHHHHHHHHHHHCCCEEECCcEEEEEEEc--CCe-EEEEEEcCCCCEEEEeCEEEECCCc
Confidence            467778888888899999999999999987  454 357766665   79999999 5543

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=91.42  E-value=0.2  Score=50.49  Aligned_cols=36  Identities=14%  Similarity=0.008  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      -.++|||+|..|+-.|..+++-|.+|+|+++...+-
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~  259 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLR  259 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSST
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCeEEEeccccccc
Confidence            479999999999999999999999999999866553

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=91.39  E-value=0.35  Score=49.56  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=43.1

Q ss_pred             chHHHHHHHHHHh-cCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~-~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.++|.+.++. .|.+| +++.|+.|..+  ++++++|++.+|++++||.||+
T Consensus       124 ~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e--~g~V~GV~t~dG~~I~Ad~VVL  175 (651)
T 3ces_A          124 VLYRQAVRTALENQPNLMI-FQQAVEDLIVE--NDRVVGAVTQMGLKFRAKAVVL  175 (651)
T ss_dssp             HHHHHHHHHHHHTCTTEEE-EECCEEEEEES--SSBEEEEEETTSEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEE-EEEEEEEEEec--CCEEEEEEECCCCEEECCEEEE
Confidence            3577888888877 68888 78899999886  7888899998998999999885

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.36  E-value=0.15  Score=47.60  Aligned_cols=33  Identities=15%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999985

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=91.30  E-value=0.42  Score=47.52  Aligned_cols=54  Identities=13%  Similarity=0.102  Sum_probs=42.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCc---EEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ---DILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~---~i~Ad~VI-~~p~  335 (431)
                      ..+-+.|.+.+++.|++|+++++|++|..+  ++. +.|++.+|+   +++||.|| ++..
T Consensus       107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~~~g~~~~~a~~vVgADG~  164 (499)
T 2qa2_A          107 STTESVLEEWALGRGAELLRGHTVRALTDE--GDH-VVVEVEGPDGPRSLTTRYVVGCDGG  164 (499)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEEEC--SSC-EEEEEECSSCEEEEEEEEEEECCCT
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCE-EEEEEEcCCCcEEEEeCEEEEccCc
Confidence            467778888888899999999999999886  444 357777765   79999999 5543

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.19  E-value=0.19  Score=46.64  Aligned_cols=32  Identities=19%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (431)
                      .|.|||+|..|...|..|+++  |++|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            589999999999999999996  79999999985

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=91.11  E-value=0.21  Score=49.45  Aligned_cols=33  Identities=12%  Similarity=0.024  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..++|||+|..|+-.|..|++.|.+|+++++..
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (483)
T 3dgh_A          188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSI  220 (483)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            479999999999999999999999999999853

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.05  E-value=0.21  Score=49.39  Aligned_cols=34  Identities=12%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +.+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999999863

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=91.00  E-value=0.17  Score=49.86  Aligned_cols=35  Identities=11%  Similarity=0.035  Sum_probs=31.3

Q ss_pred             ccEEEECCChhHHHHHHHHh--------------------hCCC-cEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAAS--------------------ASGK-SVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La--------------------~~G~-~V~vlE~~~~~   57 (431)
                      ..|+|||+|..|+-+|..|+                    +.|. +|+|+++++..
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            57999999999999999999                    6787 79999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.00  E-value=0.18  Score=48.66  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            479999999999999999999999999999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=90.98  E-value=0.21  Score=45.40  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999999999999999999999999998864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=90.82  E-value=0.22  Score=45.72  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            58999999999999999999999999999865

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.79  E-value=0.22  Score=47.22  Aligned_cols=33  Identities=21%  Similarity=0.319  Sum_probs=30.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|+|||+|..|..+|..+.+.|++|+++|.+..
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            589999999999999999999999999998754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.78  E-value=0.24  Score=46.27  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ....|.|||+|..|.+.|..|+..|+ +|.++|.+.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            34589999999999999999999999 999999876

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.75  E-value=0.26  Score=45.05  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC---cEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK---SVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~---~V~vlE~~~   55 (431)
                      ...|.|||+|.-|.+.|..|+++|+   +|.+++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            3579999999999999999999999   999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.75  E-value=0.2  Score=45.49  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|||.-|...+..|.++|++|.++.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            369999999999999999999999999998865

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=90.73  E-value=0.4  Score=43.91  Aligned_cols=47  Identities=13%  Similarity=0.036  Sum_probs=36.2

Q ss_pred             cCCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049            9 ELPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus         9 ~~~~~~~~~~~~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .++.|..++..+...-++|.|| |.-|...|..|+++|++|.++.++.
T Consensus        13 ~~~~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~   60 (302)
T 1w6u_A           13 PLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   60 (302)
T ss_dssp             CCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3555655555555556888875 6789999999999999999998764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=90.71  E-value=0.19  Score=52.48  Aligned_cols=33  Identities=30%  Similarity=0.287  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999875

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=90.67  E-value=0.19  Score=45.19  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=29.6

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (431)
                      .|.|||+|.-|...|..|+++| ++|.+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            4899999999999999999999 9999999864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=90.65  E-value=0.25  Score=44.19  Aligned_cols=47  Identities=11%  Similarity=0.102  Sum_probs=29.3

Q ss_pred             ccCCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049            8 SELPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus         8 ~~~~~~~~~~~~~~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +.||.+++..-|.  .-|+|.|| |--|...|..|+++|++|.++.++..
T Consensus        10 ~~~~~~~~~~~m~--k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           10 HSSGLVPRGSHMS--KNILVLGGSGALGAEVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             ------------C--CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             ccccccccccccC--CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4455555554443  34788886 57899999999999999999998764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=90.62  E-value=0.31  Score=48.53  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             cchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeC--CC-----cEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA--SG-----QDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~--~G-----~~i~Ad~VI~~  333 (431)
                      -...+.++.+.++..| .+|++++.|++|..+.++++++||++.  +|     .+++|+.||++
T Consensus       220 r~s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIla  283 (504)
T 1n4w_A          220 KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLG  283 (504)
T ss_dssp             BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEEC
T ss_pred             ccCHHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEc
Confidence            4454556666666666 899999999999987212379999874  56     36889988864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=90.56  E-value=0.3  Score=44.37  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=30.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..++|+|+|-.|.++|..|++.|.+|+|+.++.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            469999999999999999999999999998763

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=90.56  E-value=0.23  Score=49.35  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=90.55  E-value=0.23  Score=47.62  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|||+|-.|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999875

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=90.50  E-value=0.24  Score=49.05  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.50  E-value=0.12  Score=45.74  Aligned_cols=32  Identities=6%  Similarity=-0.030  Sum_probs=29.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..++|+|+|-.|...|..|.+.|+ |+++|++.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            469999999999999999999999 99999874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=90.31  E-value=0.3  Score=44.63  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+ |.-|...|..|+++|++|.+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            36999999 9999999999999999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=90.22  E-value=0.25  Score=47.14  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|+|-.|+.+|..|+..|.+|++++++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.21  E-value=0.29  Score=42.38  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|+|+|| |.-|...+..|.++|++|.++.++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            4899995 9999999999999999999999874

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=90.20  E-value=0.25  Score=45.39  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            369999999999999999999999999999864

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=90.20  E-value=0.18  Score=48.18  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-------CcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG-------KSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-------~~V~vlE~~~~   56 (431)
                      .|.|||+|.-|.+.|..|+++|       ++|++++++..
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998765

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=90.10  E-value=0.22  Score=46.45  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      .|.|||+|..|.+.|..|+++|+  +|.++|++.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            58999999999999999999999  999999874

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.05  E-value=0.32  Score=45.38  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=31.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ...|.|||+|..|.+.|..|+..|. +|.++|.+.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            4579999999999999999999998 999999876

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=90.05  E-value=0.21  Score=52.23  Aligned_cols=36  Identities=8%  Similarity=0.153  Sum_probs=33.0

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIG--aGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||  +|..|+-+|..|++.|.+|+++++.+ +..
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~  566 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LAN  566 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccc
Confidence            4799998  99999999999999999999999998 654

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=90.05  E-value=0.15  Score=55.19  Aligned_cols=37  Identities=16%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+|+|+++++..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            4799999999999999999999999999999998754

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.03  E-value=0.27  Score=48.71  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            69999999999999999999999999999863

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=90.02  E-value=0.32  Score=44.51  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        24 DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      .|+|.|| |+-|...+..|.++|++|.++-|++..+
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~   37 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG   37 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence            5899998 9999999999999999999998876543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.02  E-value=0.26  Score=46.79  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|+|-.|+.++..|...|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            479999999999999999999999999999874

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.01  E-value=0.28  Score=45.89  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--cEEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~   54 (431)
                      ...|.|||+|..|.+.|..|+..|.  +|.++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            3579999999999999999999998  89999985

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=89.96  E-value=0.52  Score=48.12  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSH   60 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~   60 (431)
                      .++||||||+|++||+||+.|+++|  .+|+||||....+|.
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~   45 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCCh
Confidence            3689999999999999999999999  999999999877664

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=89.94  E-value=0.32  Score=41.50  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|+|| |.-|...+..|.++|++|.++.++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            36899998 9999999999999999999998864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.93  E-value=0.28  Score=44.58  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      .|.|||+|.-|...|..|+++|+  +|.+++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            58999999999999999999999  999999874

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.91  E-value=0.25  Score=48.65  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=31.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      +...|+|||+|-.|...|..|.++|.+|+|++.+
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            4467999999999999999999999999999985

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=89.91  E-value=0.17  Score=48.94  Aligned_cols=30  Identities=27%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh-CCCcEEEEc
Q 014049           23 FDLIVIGTGLPESVISAAASA-SGKSVLHLD   52 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~-~G~~V~vlE   52 (431)
                      ..|.|||+|.-|.+.|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            369999999999999999998 599999998

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=89.91  E-value=0.3  Score=45.49  Aligned_cols=34  Identities=12%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      ...|.|||+|..|.+.|..|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999998  899999874

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=89.88  E-value=0.29  Score=45.86  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        22 ~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ...|+|.|| |.-|...+..|.++|++|.++.++..-
T Consensus        19 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           19 SHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            457999998 999999999999999999999988654

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=89.87  E-value=0.66  Score=43.16  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=41.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.+.+.++.+|.+++++++|++|..+  ++...+|++.+| ++.||+||+
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~~d~vV~  126 (357)
T 4a9w_A           76 AEVLAYLAQYEQKYALPVLRPIRVQRVSHF--GERLRVVARDGR-QWLARAVIS  126 (357)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSCCEEEEEEE--TTEEEEEETTSC-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEC--CCcEEEEEeCCC-EEEeCEEEE
Confidence            467777878888899999999999999886  555333887776 899999885

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=89.83  E-value=0.28  Score=46.74  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      .-.|||+|||-+|..+|..|...|. +|.++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999998 999999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.73  E-value=0.32  Score=42.27  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=29.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|+|.|| |.-|...+..|.++|++|.++.++.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4899998 9999999999999999999998763

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=89.65  E-value=0.22  Score=51.93  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=89.63  E-value=0.25  Score=43.06  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|.| +|.-|...+..|.++|++|.++.++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            4699999 49999999999999999999999874

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=89.61  E-value=0.32  Score=45.13  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ..|.|||||..|...|..|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            369999999999999999999997 999999874

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=89.52  E-value=0.3  Score=45.35  Aligned_cols=43  Identities=19%  Similarity=0.158  Sum_probs=34.2

Q ss_pred             CcccEEEECCC-hhHHHHHHHHhhCCCcEEEEccC--------CCCCCcccc
Q 014049           21 TAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN--------PFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaG-l~GL~aA~~La~~G~~V~vlE~~--------~~~GG~~~t   63 (431)
                      ....|+|||+| +.|..+|..|...|.+|+|++++        ...++..++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~  227 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHH  227 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCE
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhccc
Confidence            34689999999 67999999999999999988554        566665443

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=89.51  E-value=0.58  Score=44.91  Aligned_cols=52  Identities=17%  Similarity=0.092  Sum_probs=40.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI-~~p~  335 (431)
                      ..|.+.|.+.+..  ++|+++++|++|..+  ++. +.|++++|++++||.|| ++..
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG~  179 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEED--ADG-VTVWFTDGSSASGDLLIAADGS  179 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEE--TTE-EEEEETTSCEEEESEEEECCCT
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEec--CCc-EEEEEcCCCEEeeCEEEECCCc
Confidence            4666777776655  889999999999987  454 56888999999999999 4443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=89.45  E-value=0.24  Score=45.63  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|-+||-|.-|...|..|.++|++|++++++..
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            599999999999999999999999999998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=89.39  E-value=0.31  Score=46.30  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (431)
                      ....|+|+|||-+|..+|..|...|. +|.++|++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34689999999999999999999998 79999997

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=89.37  E-value=0.29  Score=43.88  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ...|+|||+|=.|..+|..|+++|. +++++|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            3579999999999999999999997 899999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=89.37  E-value=0.29  Score=44.11  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            4799999999999999999999999 89998764

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=89.35  E-value=0.32  Score=43.61  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            369999999999999999999999999999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=89.25  E-value=0.27  Score=45.54  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~   55 (431)
                      .|.|||+|-.|...|..|+++|  .+|.++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6899999999999999999999  7999999874

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=89.16  E-value=0.36  Score=45.38  Aligned_cols=33  Identities=18%  Similarity=0.091  Sum_probs=30.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|.+.|..|+++|++|.+.+++.
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            369999999999999999999999999999875

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.15  E-value=0.32  Score=44.30  Aligned_cols=31  Identities=13%  Similarity=0.082  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|.-|...|..|++ |++|.+++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            58999999999999999999 99999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=89.12  E-value=0.4  Score=42.70  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC----cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK----SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~----~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++|+    +|.+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            369999999999999999999998    999999874

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=89.12  E-value=0.34  Score=46.34  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|||+|-.|+.+|..|+..|.+|++++++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=89.06  E-value=0.3  Score=53.20  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      +|+|||+|..|+-+|..|++.|. +|++++++++
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            79999999999999999999996 8999999873

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=89.05  E-value=0.58  Score=42.98  Aligned_cols=54  Identities=9%  Similarity=0.035  Sum_probs=34.2

Q ss_pred             CccCCCCCCCCCCCCcccEEEECCC-hhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049            7 ESELPVPPYPPIEPTAFDLIVIGTG-LPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus         7 ~~~~~~~~~~~~~~~~~DviIIGaG-l~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      +|.++.|.......+..-++|.||+ --|...|..|+++|.+|.+++++....+.
T Consensus        13 ~~~~~~p~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~   67 (299)
T 3t7c_A           13 EAQTQGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGV   67 (299)
T ss_dssp             ---------CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTC
T ss_pred             eccCCCCcccccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence            5566666554444444558888874 56999999999999999999998765543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=89.00  E-value=0.47  Score=49.50  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=32.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -..|.|||||..|.-.|..++.+|++|+++|.+..
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~  350 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPK  350 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHh
Confidence            35799999999999999999999999999998764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=88.99  E-value=0.86  Score=46.59  Aligned_cols=50  Identities=22%  Similarity=0.308  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHhc-CcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          280 ELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       280 ~l~~al~r~~~~~-Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      .+.+.|.+.++.. |.+| ++..|..|..+  +++++||++.+|++++||.||+
T Consensus       118 ~l~~~L~~~l~~~~GV~I-~~~~V~~L~~d--~g~V~GV~t~~G~~i~Ad~VVL  168 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDL-LQDTVIGVSAN--SGKFSSVTVRSGRAIQAKAAIL  168 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEEE--TTEEEEEEETTSCEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEE-EeeEEEEEEec--CCEEEEEEECCCcEEEeCEEEE
Confidence            6677887877774 8888 56799999887  7888889999999999999885

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=88.96  E-value=0.35  Score=48.62  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            35799999999999999999999999999998654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=88.93  E-value=0.3  Score=50.82  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=35.4

Q ss_pred             ccEEEEC--CChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIG--TGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIG--aGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      .+|+|||  +|..|+-+|..|++.|.+|+++++.+.+....
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~  564 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT  564 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGG
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccccc
Confidence            3599999  99999999999999999999999999887654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=88.79  E-value=0.43  Score=43.24  Aligned_cols=33  Identities=15%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..++|||+|-+|.++|..|++.|.+|.|+.|+.
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~  151 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSS  151 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999998874

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=88.75  E-value=0.27  Score=44.64  Aligned_cols=33  Identities=6%  Similarity=0.139  Sum_probs=30.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..++|+|+|-.|.++|..|++.|.+|+|+.++.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            469999999999999999999999999998874

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=88.68  E-value=0.42  Score=44.53  Aligned_cols=43  Identities=16%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             CCCCCCCCCCCcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           11 PVPPYPPIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        11 ~~~~~~~~~~~~~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      |+++...+.+  ..|+|.| +|.-|...+..|.++|++|.++.++.
T Consensus        12 ~~~~~~~~~~--~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~   55 (333)
T 2q1w_A           12 SGLVPRGSHM--KKVFITGICGQIGSHIAELLLERGDKVVGIDNFA   55 (333)
T ss_dssp             ---------C--CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CceeeecCCC--CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5555555554  3599998 59999999999999999999998864

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=88.56  E-value=0.76  Score=46.01  Aligned_cols=55  Identities=20%  Similarity=0.180  Sum_probs=42.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCC-c--EEEEEeCCC---cEEEeCEEE-ECCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG-S--YKGVRLASG---QDILSHKLV-LDPS  335 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g-~--~~gV~~~~G---~~i~Ad~VI-~~p~  335 (431)
                      ..+.+.|.+.+++.|++|+++++|++|..+  ++ +  .+.|++.++   ++++||.|| ++..
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~--~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~  181 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQH--DDDAGAGVTARLAGPDGEYDLRAGYLVGADGN  181 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE--CGGGCSEEEEEEEETTEEEEEEEEEEEECCCT
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEC--CCCccccEEEEEEcCCCeEEEEeCEEEECCCC
Confidence            467788888888899999999999999987  33 1  245666666   689999999 4443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=88.50  E-value=0.56  Score=44.11  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=31.0

Q ss_pred             CCcccEEEECC-ChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           20 PTAFDLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGa-Gl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      +....|+|||+ |..|.++|..|+..|.  +|.++|.+.
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            44568999998 9999999999999995  899999853

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=88.50  E-value=0.35  Score=43.48  Aligned_cols=30  Identities=17%  Similarity=0.169  Sum_probs=27.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (431)
                      .|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            488999999999999999999999999765

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=88.42  E-value=0.32  Score=44.53  Aligned_cols=32  Identities=19%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|.|||+|..|...|..|+++|++|.+++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            369999999999999999999999999998 54

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.40  E-value=0.34  Score=44.24  Aligned_cols=33  Identities=9%  Similarity=0.181  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~   55 (431)
                      ..|.|||+|.-|...|..|+++  |++|.+++++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4799999999999999999998  68999998864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=88.36  E-value=0.52  Score=43.42  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=30.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ..|+|||+|-.|..+|..|++.|. +|+|+.++.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999997 999998863

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=88.34  E-value=0.43  Score=44.57  Aligned_cols=45  Identities=13%  Similarity=0.053  Sum_probs=30.4

Q ss_pred             CCCCCCCCCC---CcccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           11 PVPPYPPIEP---TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        11 ~~~~~~~~~~---~~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      |.|.+|+.+.   ....|+|.|| |.-|...+..|.++|++|.++.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           13 GRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             --------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cccccccccccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4444444432   2346999998 9999999999999999999998763

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=88.19  E-value=0.33  Score=46.31  Aligned_cols=39  Identities=21%  Similarity=0.201  Sum_probs=35.0

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCC---cEEEEccCC-CCCCc
Q 014049           22 AFDLIVIGT-GLPESVISAAASASGK---SVLHLDPNP-FYGSH   60 (431)
Q Consensus        22 ~~DviIIGa-Gl~GL~aA~~La~~G~---~V~vlE~~~-~~GG~   60 (431)
                      .-.|+|||+ |..|+.|+..+..-|.   +|+++|.+. .-||+
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            468999999 9999999999999997   999999986 55776

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=88.03  E-value=0.69  Score=41.46  Aligned_cols=34  Identities=21%  Similarity=0.153  Sum_probs=29.4

Q ss_pred             cccEEEECC-Ch-hHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGT-GL-PESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGa-Gl-~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..-|+|.|| |- -|...|..|+++|++|+++.++.
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~   57 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE   57 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH
Confidence            345899998 75 89999999999999999998863

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=87.92  E-value=1  Score=42.73  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      ..+.+.|.+.+...|++|+++++|++|..   ++   .|++.+|++++||.||.
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~---~~---~v~~~~g~~~~ad~vV~  154 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP---VG---RLTLQTGEVLEADLIVG  154 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET---TT---EEEETTSCEEECSEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe---CC---EEEECCCCEEEcCEEEE
Confidence            56778888888889999999999999964   34   56778899999999984

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=87.89  E-value=0.47  Score=43.74  Aligned_cols=34  Identities=21%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|.|||+|-.|..+|..|...|.+|++++++.
T Consensus       157 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4579999999999999999999999999999874

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=87.88  E-value=0.4  Score=43.61  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=30.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..++|||+|-.|.+.|..|++.|.+|++++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            479999999999999999999999999998873

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=87.85  E-value=0.47  Score=46.67  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|+|+|+|-.|..+|..|+..|.+|++.|+++
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3568999999999999999999999999999864

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=87.81  E-value=0.44  Score=46.75  Aligned_cols=32  Identities=16%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..|+|+|+|..|...|..|++.|++|.+++++
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~   35 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   35 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECC
Confidence            46999999999999999999999999999876

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=87.76  E-value=0.68  Score=42.37  Aligned_cols=34  Identities=9%  Similarity=0.112  Sum_probs=30.2

Q ss_pred             CcccEEEECCC-hhHHHHHHHHhhCCCcEEEEccC
Q 014049           21 TAFDLIVIGTG-LPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        21 ~~~DviIIGaG-l~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ...+|+|||+| +.|.-+|..|.+.|..|+++.++
T Consensus       164 ~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          164 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            34689999999 68999999999999999999754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=87.76  E-value=0.59  Score=46.54  Aligned_cols=55  Identities=11%  Similarity=0.153  Sum_probs=40.7

Q ss_pred             cchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCC-cEEEEEeC--CC-----cEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSG-SYKGVRLA--SG-----QDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g-~~~gV~~~--~G-----~~i~Ad~VI~~  333 (431)
                      -...+.++.+.++..| .+|++++.|++|..+. ++ +++||++.  +|     .+++|+.||++
T Consensus       225 R~s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~-~g~~~~gV~~~~~~g~~~~~~~~~A~~VIla  288 (507)
T 1coy_A          225 KKSLDKTYLAQAAATGKLTITTLHRVTKVAPAT-GSGYSVTMEQIDEQGNVVATKVVTADRVFFA  288 (507)
T ss_dssp             BCCTTTTHHHHHHHTTCEEEECSEEEEEEEECS-SSSEEEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             CcChHHHHHHHHHhcCCcEEEeCCEEEEEEECC-CCCEEEEEEEeCCCCcccccEEEEeCEEEEc
Confidence            4455566666666665 8999999999999872 34 79999874  56     36889988864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=87.61  E-value=0.41  Score=47.53  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             CcccEEEECCChhHHH-HHHHHhhCCCcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~-aA~~La~~G~~V~vlE~~~~   56 (431)
                      ....|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~   57 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN   57 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence            3457999999999997 69999999999999998753

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=87.60  E-value=0.49  Score=42.48  Aligned_cols=36  Identities=11%  Similarity=0.038  Sum_probs=29.8

Q ss_pred             CCcccEEEECC---ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           20 PTAFDLIVIGT---GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGa---Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ....-|+|.||   |--|...|..|+++|++|.++.+++
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~   50 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGD   50 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecch
Confidence            33456899996   4679999999999999999998873

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=87.50  E-value=0.54  Score=42.31  Aligned_cols=32  Identities=22%  Similarity=0.356  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .++|||+|-.|...|..|.+.|.+|.+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            79999999999999999999999999999864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=87.46  E-value=1.1  Score=42.06  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=31.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|.|||.|..|...|..|+..|.+|++++++..
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            45699999999999999999999999999998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.38  E-value=0.52  Score=43.23  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|.|||+|-.|..+|..|+..|.+|++++++.
T Consensus       155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            3579999999999999999999999999999874

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=87.23  E-value=0.11  Score=44.93  Aligned_cols=34  Identities=24%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||+|--|...|..|+++|++|.+++++..
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            4699999999999999999999999999988754

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=87.30  E-value=0.45  Score=46.72  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=32.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--------------------C-CcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASAS--------------------G-KSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--------------------G-~~V~vlE~~~~~GG~   60 (431)
                      -.|+|||+|..|+-+|..|++.                    | .+|+++++++.+-..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~  206 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAA  206 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhc
Confidence            5799999999999999999974                    6 599999999876543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=87.26  E-value=0.81  Score=42.79  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ....|.|||.|..|...|..|+..|++|++++++.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            34579999999999999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	431
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	5e-68
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-20
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-28
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-19
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	4e-10
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  222 bits (566), Expect = 5e-68
 Identities = 90/356 (25%), Positives = 141/356 (39%), Gaps = 48/356 (13%)

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
                +D        S       D   +  +     S+++ +  R FN+D+   ++L+  
Sbjct: 177 GKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEG-RRFNIDLV-SKLLYSR 234

Query: 122 DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRF 181
              +DL++KS  S Y EFK+I        +  +  VP SRA +F  K L ++EK  LM+F
Sbjct: 235 GLLIDLLIKSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKF 293

Query: 182 FKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVS 241
                 +       E +         + F+E+L   KL   ++  VL++IAM        
Sbjct: 294 LTFCVEY-------EEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTS-- 344

Query: 242 EYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMP 301
                T DG+     +   +GR+ N     ++P+YGQGELPQ FCR  AV G +Y LR  
Sbjct: 345 ----CTVDGLKATKKFLQCLGRYGNT--PFLFPLYGQGELPQCFCRMCAVFGGIYCLRHS 398

Query: 302 VISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDN 361
           V  L+ D+ S   K V    GQ I+S   +++ S+    +                    
Sbjct: 399 VQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC------------------- 439

Query: 362 KGKVARGICITRSSLKPDLSNFLVIFPPRSLFPE----QVTSIRVLQLGGNLAVCP 413
             +V+R  C          SN  V   P S        +       Q+  N   CP
Sbjct: 440 -SRVSR-DCYNDLP-----SNVYVCSGPDSGLGNDNAVKQAETLFQQICPNEDFCP 488

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.7 bits (227), Expect = 1e-20
 Identities = 31/74 (41%), Positives = 47/74 (63%)

Query: 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTP 79
          P+ FD+IVIGTGLPES+I+AA S SG+ VLH+D   +YG +++S S + L  +L  +   
Sbjct: 4  PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQEN 63

Query: 80 SSVCPDPLYSDVEI 93
          + V  +      +I
Sbjct: 64 NDVVTENSMWQEQI 77

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (277), Expect = 2e-28
 Identities = 71/319 (22%), Positives = 145/319 (45%), Gaps = 28/319 (8%)

Query: 21  TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPS 80
           T +D+IV+GTG+ E ++S   S  GK VLH+D    YG   +S++++ L      +    
Sbjct: 4   TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 81  SVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFK 140
                                    R++N+D+  P+ L       ++++ +  + Y++FK
Sbjct: 64  EERESKFG---------------KDRDWNVDLI-PKFLMANGELTNILIHTDVTRYVDFK 107

Query: 141 SIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVR 200
            +  +++     K+  VP +         +G+ EK ++ +F + +  +    + ++ +  
Sbjct: 108 QVSGSYVFKQG-KIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSY----KEDDLSTH 162

Query: 201 ISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSS 260
              +   +   E   K  L +  K  + +A+A+   D  + +     R    R+ LY  S
Sbjct: 163 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQP---ARPSFERILLYCQS 219

Query: 261 IGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320
           + R+       +YP+YG GELPQ F R +A+ G  Y+L  P+  +L  +++G ++GV+  
Sbjct: 220 VARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-T 276

Query: 321 SGQDILSHKLVLDPSFTVP 339
                 +  ++ DP++  P
Sbjct: 277 KLGTFKAPLVIADPTY-FP 294

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.3 bits (209), Expect = 6e-19
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 33/322 (10%)

Query: 23  FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSV 82
           +D+IV+GTGL E ++S   S +GK VLH+D NP+YG   SS++  +  +           
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQL------ 60

Query: 83  CPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142
                              +            P+ L      V ++L +  + YL+FK +
Sbjct: 61  -------------LEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVV 107

Query: 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRIS 202
           + +F+     K+  VP +         +G+ EK +  +F   V      D      V   
Sbjct: 108 EGSFVYKGG-KIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD-- 164

Query: 203 EEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262
               ++   +   K  L   +     +A+A+   D  + +  L   + INR+ LY+ S+ 
Sbjct: 165 --PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCL---ETINRIKLYSESLA 219

Query: 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322
           R+       +YP+YG GELPQ F R +A+ G  Y+L  PV  ++ +       GV  + G
Sbjct: 220 RYGK--SPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENG--KVVGV-KSEG 274

Query: 323 QDILSHKLVLDPSFTVPGSLAS 344
           +     +L+ DPS+ VP  +  
Sbjct: 275 EVARCKQLICDPSY-VPDRVPI 295

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 10/53 (18%), Positives = 22/53 (41%)

Query: 364 KVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416
           +++R + IT  S+    ++  V             ++RV++L  +   C  G 
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGT 56

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 8/127 (6%)

Query: 4   NESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61
           ++SE +  +   P       D++V+G+G   +  SAA SA+  G  V+ ++  P  G + 
Sbjct: 1   DKSERQAALASAPHDT---VDVVVVGSGG--AGFSAAISATDSGAKVILIEKEPVIGGN- 54

Query: 62  SSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGPRVLFCA 121
           + L+   +            +   P     +       +            S   V +  
Sbjct: 55  AKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMT 114

Query: 122 DHAVDLM 128
               DL 
Sbjct: 115 AMGADLT 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	431
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.97
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.89
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.84
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.81
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.69
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.57
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.51
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.5
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.5
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.47
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.41
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.4
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.39
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.38
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.31
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.19
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.18
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.04
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.98
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.94
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.92
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.87
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.86
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.85
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.85
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.82
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.82
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.81
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.8
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.77
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.7
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.7
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.68
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.67
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.65
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.65
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.64
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.63
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	98.63
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.62
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.62
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.61
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.6
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.6
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.6
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.58
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.58
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.57
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.56
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.56
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.55
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.51
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.49
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.47
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.44
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.43
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.43
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.41
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.4
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.28
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.26
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.26
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	98.17
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.93
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.89
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.82
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.81
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.79
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.76
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.7
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.57
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.55
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.47
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.42
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.31
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.26
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.26
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.25
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.24
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.22
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.21
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.17
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.16
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.08
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.04
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.98
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.97
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.91
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	96.89
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.78
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.77
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.75
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.69
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.67
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	96.67
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.48
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.37
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.37
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.36
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.34
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.3
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.24
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.1
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.05
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.0
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.95
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.91
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.88
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.87
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.73
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.67
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.66
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.42
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.27
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.01
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.96
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.71
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.65
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.65
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.59
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.59
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.45
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.3
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.19
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.19
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.15
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.99
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.61
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.59
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.17
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.09
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.87
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.83
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	92.81
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.8
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	92.7
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.65
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	92.56
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.42
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.32
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.28
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	92.24
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	92.2
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.03
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.79
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.78
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	91.56
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	91.52
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	91.46
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.9
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.77
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.75
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.67
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.59
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.35
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.13
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	90.08
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	89.75
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.69
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.63
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	89.55
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.5
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.4
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.27
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	89.15
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.12
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.03
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.95
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.78
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.68
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.61
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	88.47
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	88.37
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	88.15
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.93
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	87.85
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	87.73
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	87.48
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.32
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	87.29
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.0
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	86.76
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.58
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	86.23
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.07
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.32
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.83
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.6
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	83.97
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.75
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	83.6
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	83.6
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	83.41
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	83.4
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	83.29
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	83.23
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	83.11
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.1
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	82.88
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.69
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	82.57
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	82.36
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	81.93
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	81.64
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	81.51
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	80.12

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-51  Score=400.36  Aligned_cols=301  Identities=35%  Similarity=0.597  Sum_probs=249.1

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCC----------------
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVC----------------   83 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~----------------   83 (431)
                      +++|||||+||||..++.|++|++.|++|+|+|+|++|||.++||+++++..|+.+........                
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            4679999999999999999999999999999999999999999999999999987554311000                


Q ss_pred             -----CCCccccccccc---------------------------------------------------------------
Q 014049           84 -----PDPLYSDVEISN---------------------------------------------------------------   95 (431)
Q Consensus        84 -----~~~~~~~~~~~~---------------------------------------------------------------   95 (431)
                           ......+++..+                                                               
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                 000000000000                                                               


Q ss_pred             ----------------------------------------------cccccccCCCCceeeecCCCeEEeeCchHHHHHH
Q 014049           96 ----------------------------------------------YASRLLSQHPRNFNLDVSGPRVLFCADHAVDLML  129 (431)
Q Consensus        96 ----------------------------------------------~~~~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~  129 (431)
                                                                    .....+.+..|+|++||. |+++++.+.++++|.
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~-Pk~l~a~g~lv~~Li  242 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLV-SKLLYSRGLLIDLLI  242 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESS-CCCEESSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccc-chheecccHHHHHHH
Confidence                                                          000001124689999996 999999999999999


Q ss_pred             hcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHHHHHHHHHcccCCCccccccccccccccCCc
Q 014049          130 KSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSP  209 (431)
Q Consensus       130 ~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  209 (431)
                      ++++.+|+||+.++..|++. +|++.++|+++.++|+++.+++.+||++|+|+.++..+.+. +.      ....+.+.|
T Consensus       243 ~S~v~rYlEFk~v~~~~v~~-~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~-~~------~~~~~~~~~  314 (491)
T d1vg0a1         243 KSNVSRYAEFKNITRILAFR-EGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-PD------EYRAYEGTT  314 (491)
T ss_dssp             HHTGGGGCCEEECCEEEEES-SSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-HH------HHHTTTTSB
T ss_pred             HcChhhheeEEEeceEEEec-CCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC-cc------ccccccCCc
Confidence            99999999999999999886 88999999999999999999999999999999999877532 11      123455789


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHH
Q 014049          210 FAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRA  289 (431)
Q Consensus       210 ~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~  289 (431)
                      |.+||+++++++.+++++.|++++.....      .++.+++.++..|+.|+++||.  ++|+||+||.++|+|+|||++
T Consensus       315 ~~e~l~~~~l~~~~~~~i~~aial~~~~~------~~~~~~l~ri~~yl~Slg~yG~--spflyp~YG~gEipQ~FcR~~  386 (491)
T d1vg0a1         315 FSEYLKTQKLTPNLQYFVLHSIAMTSETT------SCTVDGLKATKKFLQCLGRYGN--TPFLFPLYGQGELPQCFCRMC  386 (491)
T ss_dssp             HHHHHTTSSSCHHHHHHHHHHTTC--CCS------CBHHHHHHHHHHHHHHTTSSSS--SSEEEETTCTTHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHhheeccCCCC------ccHHHHHHHHHHHHHHHHhhCC--CCeEeecCCcchHHHHHHHHH
Confidence            99999999999999999999988853222      3577889999999999999996  469999999999999999999


Q ss_pred             HhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCC
Q 014049          290 AVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (431)
Q Consensus       290 ~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~  337 (431)
                      ++.||+|+||++|++|.++.+++++.+|.+++|++++|++||++|.+.
T Consensus       387 AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~  434 (491)
T d1vg0a1         387 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYL  434 (491)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGB
T ss_pred             HhcCcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhC
Confidence            999999999999999999766888999999999999999999998876

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.5e-38  Score=287.78  Aligned_cols=292  Identities=25%  Similarity=0.492  Sum_probs=220.6

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS   98 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (431)
                      |+++|||||||||++||+||++|+++|++|+||||++++||+++|++++++..+......         .. ..     .
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~---------~~-~~-----~   66 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI---------SK-EE-----R   66 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCC---------CH-HH-----H
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCcc---------cc-cc-----c
Confidence            567899999999999999999999999999999999999999999998765433322110         00 00     0


Q ss_pred             ccccCCCCceeeecCCCeEEeeCchHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHH
Q 014049           99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL  178 (431)
Q Consensus        99 ~~~~~~~~~~~~dl~Gp~~~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l  178 (431)
                      ........+|.+|+ +|+++...+.+...+.+.+..++.+|..+++.+.+. ++...++|....+.+.....++.+++.+
T Consensus        67 ~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (297)
T d2bcgg1          67 ESKFGKDRDWNVDL-IPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFK-QGKIYKVPANEIEAISSPLMGIFEKRRM  144 (297)
T ss_dssp             HHHHCCGGGCCEES-SCCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEE-TTEEEECCSSHHHHHHCTTSCHHHHHHH
T ss_pred             cccccccccceecc-CcccccCCCcceeeeeeccccccccccccCcccccc-cCCccccccchhhhhhccccccccchhh
Confidence            00112345788999 599999999999999899999999999988888764 7888999998888888778888888888


Q ss_pred             HHHHHHHHcccCCCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcCCCCcchhhhhhchhhHHHHHHHHH
Q 014049          179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN  258 (431)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  258 (431)
                      .+|...+.........    ......+...++.++++++++++.++.++.+.+........   ...+....+.++..+.
T Consensus       145 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  217 (297)
T d2bcgg1         145 KKFLEWISSYKEDDLS----THQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDY---LQQPARPSFERILLYC  217 (297)
T ss_dssp             HHHHHHHHHCBTTBGG----GSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG---GGSBHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcccc----chhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccc---cchhhhhhhhhhhhhh
Confidence            8887776655322110    00112345578999999999999888877665433221111   1234555566666666


Q ss_pred             hhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCC
Q 014049          259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT  337 (431)
Q Consensus       259 ~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~  337 (431)
                      .+...+..  +++.||+||+++|+++|++.++++|++|++|++|++|..+.+++++++|+ .+|++++||+||++|+++
T Consensus       218 ~~~~~~~~--~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~g~~~~ad~VI~~~s~~  293 (297)
T d2bcgg1         218 QSVARYGK--SPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVK-TKLGTFKAPLVIADPTYF  293 (297)
T ss_dssp             HHHHHHSS--CSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEE-ETTEEEECSCEEECGGGC
T ss_pred             hccccccc--CcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEE-cCCEEEECCEEEEChhhc
Confidence            66554443  34889999999999999999999999999999999999875567787776 689999999999998875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-22  Score=191.84  Aligned_cols=274  Identities=13%  Similarity=0.067  Sum_probs=151.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ  103 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (431)
                      ||||||||++||+||..|+++|++|+||||++++||+++|++..                                    
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~------------------------------------   44 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ------------------------------------   44 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCT------------------------------------
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECC------------------------------------
Confidence            89999999999999999999999999999999999999997532                                    


Q ss_pred             CCCceeeecCCCeEEeeCc-hHHHHHHhcCcccccccccccceeeeccCCceeecCCChhhhhccCCCChHHHHHHHHHH
Q 014049          104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF  182 (431)
Q Consensus       104 ~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~l~~~~k~~l~~~~  182 (431)
                        ..+.+|+ |++++.... .+.+++.+.|+..+... ...... +..+..........     ..............+.
T Consensus        45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~-~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  114 (383)
T d2v5za1          45 --KVKYVDL-GGSYVGPTQNRILRLAKELGLETYKVN-EVERLI-HHVKGKSYPFRGPF-----PPVWNPITYLDHNNFW  114 (383)
T ss_dssp             --TTSCEES-SCCEECTTCHHHHHHHHHTTCCEEECC-CSSEEE-EEETTEEEEECSSS-----CCCCSHHHHHHHHHHH
T ss_pred             --CCcEEeC-CceEeCCCChHHHHHHHHcCCcceecc-CccceE-EecCcccccccccc-----cchhhhhhhhhHHHHH
Confidence              1344677 688875543 57777888887543211 111111 11122222221110     0011111222222222


Q ss_pred             HHHHcccCCCccc-cccccccccccCCcHHHHHHhcCCChhHHHHHHHHH-hcCCCCcchhhhhhchhhHHHHHHHHHhh
Q 014049          183 KLVQGHLSLDESE-ENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAI-AMADYDQEVSEYVLKTRDGINRLALYNSS  260 (431)
Q Consensus       183 ~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~s  260 (431)
                      ..+.......... ........++...++.+++++....+....+..... ........    ..+....+.........
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  190 (383)
T d2v5za1         115 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETH----EVSALWFLWYVKQCGGT  190 (383)
T ss_dssp             HHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTT----TSBHHHHHHHHHTTTCH
T ss_pred             HHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccc----hhhHHHHHHHHHhhccc
Confidence            2222111110000 001111233456789999998887766655443211 11111111    11222221111110000


Q ss_pred             hcc-ccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC-CCCCC
Q 014049          261 IGR-FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTV  338 (431)
Q Consensus       261 ~~~-~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~-p~~~~  338 (431)
                      ... .....+....+.+|++.++++++   +..|++|++|++|++|..+  +++ +.|++.||++++||+||++ |...+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~g~~i~~~~~v~~I~~~--~~~-v~v~~~~g~~~~ad~vI~a~p~~~~  264 (383)
T d2v5za1         191 TRIISTTNGGQERKFVGGSGQVSERIM---DLLGDRVKLERPVIYIDQT--REN-VLVETLNHEMYEAKYVISAIPPTLG  264 (383)
T ss_dssp             HHHHCSTTSTTSEEETTCTHHHHHHHH---HHHGGGEEESCCEEEEECS--SSS-EEEEETTSCEEEESEEEECSCGGGG
T ss_pred             ccccccccCcceeeeccchhHHHHHHH---HHcCCeEEecCcceEEEec--CCe-EEEEECCCCEEECCEEEECCCHHHH
Confidence            000 00011224678999999998775   5679999999999999876  555 4688899999999999975 44444


Q ss_pred             CCCCCCchhhhhhhhhh
Q 014049          339 PGSLASSHQQLQESFQA  355 (431)
Q Consensus       339 ~~l~~~~~~~l~~~~~~  355 (431)
                      .++.  ++|+||..+..
T Consensus       265 ~~~~--~~p~l~~~~~~  279 (383)
T d2v5za1         265 MKIH--FNPPLPMMRNQ  279 (383)
T ss_dssp             GGSE--EESCCCHHHHH
T ss_pred             hhCc--cCCCCCHHHHH
Confidence            4432  35556554443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.84  E-value=2.2e-20  Score=174.02  Aligned_cols=77  Identities=13%  Similarity=0.291  Sum_probs=61.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      .||+|||||++||+||++|+++|++|+||||++++||+++|++.+                                   
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~-----------------------------------   45 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALA-----------------------------------   45 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEET-----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeC-----------------------------------
Confidence            389999999999999999999999999999999999999998653                                   


Q ss_pred             CCCCceeeecCCCeEEeeCc-hHHHHHHhcCccccccc
Q 014049          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEF  139 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f  139 (431)
                          ++.+|. |++++.... .+.+++.+.+....+.+
T Consensus        46 ----g~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (347)
T d2ivda1          46 ----GYLVEQ-GPNSFLDREPATRALAAALNLEGRIRA   78 (347)
T ss_dssp             ----TEEEES-SCCCEETTCHHHHHHHHHTTCGGGEEC
T ss_pred             ----CEEEec-CceEEecCCHHHHHHHHHhccccccee
Confidence                345677 577665544 45666777776554433

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.81  E-value=4.9e-19  Score=167.36  Aligned_cols=262  Identities=13%  Similarity=0.120  Sum_probs=135.7

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      ..+|+|||||++||+||.+|+++|++|+|||+++++||++.|+..+.                                 
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~---------------------------------   76 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE---------------------------------   76 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT---------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCC---------------------------------
Confidence            35899999999999999999999999999999999999999976431                                 


Q ss_pred             cCCCCceeeecCCCeEEeeCc-hHHHHHHhcCccccccccc-ccceeeeccCCceeecCCCh--hhhhcc------CCCC
Q 014049          102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKS-IDATFMLDADAKLCSVPDSR--AAIFKD------KSLG  171 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~~~f~~-~~~~~~~~~~g~~~~~p~~~--~~~~~~------~~l~  171 (431)
                          ..+.+|. |++++.... .+.+++.+.++... .+.. ....+.+. ++.........  ......      ....
T Consensus        77 ----~g~~~d~-G~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (370)
T d2iida1          77 ----AGWYANL-GPMRLPEKHRIVREYIRKFDLRLN-EFSQENDNAWYFI-KNIRKKVGEVKKDPGLLKYPVKPSEAGKS  149 (370)
T ss_dssp             ----TTEEEES-SCCCEETTCHHHHHHHHHTTCCEE-EECSCCTTSEEEE-TTEEEEHHHHHHCGGGGCCCCCGGGTTCC
T ss_pred             ----CCceecc-CceeecCccHHHHHHHHHhCCccc-eeeccCCceEEec-CCccccchhhhhhhhhhhhhhhhhhhhhh
Confidence                3466777 577665444 45566666665321 2211 11112221 22211110000  000000      0000


Q ss_pred             hHH--HHHHHHHHHHHHcccCCCccccccccccccccCCcHHHHHHhc-CCChhHHHHHHHHHhcCCCCcchhhhhhchh
Q 014049          172 LME--KNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM-KLPHKIKSIVLYAIAMADYDQEVSEYVLKTR  248 (431)
Q Consensus       172 ~~~--k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~  248 (431)
                      ...  ...+.++...+....        .......+...+..+++... .........+......   ...   ...+. 
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~-  214 (370)
T d2iida1         150 AGQLYEESLGKVVEELKRTN--------CSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNE---DSG---YYVSF-  214 (370)
T ss_dssp             HHHHHHHHTHHHHHHHHHSC--------HHHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTC---GGG---TTSBH-
T ss_pred             hHHHHHHHHHHHHHHHHhhh--------hhhhhhhccchhHHHHHHHhccccHHHHHHhhccccc---cch---hhhHH-
Confidence            000  011111111111110        00011223345666776653 3444333333221111   000   00111 


Q ss_pred             hHHHHHHHHHhhhccccCCCccEEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEE-EEEe--CCCcEE
Q 014049          249 DGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK-GVRL--ASGQDI  325 (431)
Q Consensus       249 ~~~~~~~~~~~s~~~~g~~~~~~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~-gV~~--~~G~~i  325 (431)
                        +.... ..... ...   ..+.++.+|++.++++|.   +..|++|+++++|++|..+  +++++ .+..  .+++++
T Consensus       215 --~~~~~-~~~~~-~~~---~~~~~~~~~~~~l~~~l~---~~~g~~i~~~~~V~~I~~~--~~~v~v~~~~~~~~~~~~  282 (370)
T d2iida1         215 --IESLK-HDDIF-AYE---KRFDEIVDGMDKLPTAMY---RDIQDKVHFNAQVIKIQQN--DQKVTVVYETLSKETPSV  282 (370)
T ss_dssp             --HHHHH-HHHHH-TTC---CCEEEETTCTTHHHHHHH---HHTGGGEESSCEEEEEEEC--SSCEEEEEECSSSCCCEE
T ss_pred             --Hhhhh-hhhhh-ccc---cccccchhhHHHHHHHHH---HhcCCccccCceEEEEEEe--CCeEEEEEEecCCCeEEE
Confidence              11111 11111 111   226789999999999875   4679999999999999987  44433 2332  345689


Q ss_pred             EeCEEEEC-CCCCCCCCCCCchhhhhhh
Q 014049          326 LSHKLVLD-PSFTVPGSLASSHQQLQES  352 (431)
Q Consensus       326 ~Ad~VI~~-p~~~~~~l~~~~~~~l~~~  352 (431)
                      +||+||++ |...+..+  ..+|+|+..
T Consensus       283 ~aD~VI~A~p~~~l~~i--~~~p~l~~~  308 (370)
T d2iida1         283 TADYVIVCTTSRAVRLI--KFNPPLLPK  308 (370)
T ss_dssp             EESEEEECSCHHHHTTS--EEESCCCHH
T ss_pred             EeeEEEecCCHHHHhhC--ccCCCCCHH
Confidence            99999975 43333332  345555554

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.69  E-value=1.2e-16  Score=148.71  Aligned_cols=74  Identities=18%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS  102 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (431)
                      .+|||||||++||+||.+|+++|++|+|||+++++||+++|++.+                                   
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~-----------------------------------   46 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD-----------------------------------   46 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET-----------------------------------
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccC-----------------------------------
Confidence            369999999999999999999999999999999999999997653                                   


Q ss_pred             CCCCceeeecCCCeEEeeCc-hHHHHHHhcCcccc
Q 014049          103 QHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHY  136 (431)
Q Consensus       103 ~~~~~~~~dl~Gp~~~~~~~-~~~~~l~~~~~~~~  136 (431)
                          ++.+|. |++++.... .+.+++.+.+....
T Consensus        47 ----g~~~d~-G~~~~~~~~~~~~~~~~~~~~~~~   76 (373)
T d1seza1          47 ----GLIWDE-GANTMTESEGDVTFLIDSLGLREK   76 (373)
T ss_dssp             ----TEEEES-SCCCBCCCSHHHHHHHHHTTCGGG
T ss_pred             ----CEEEec-CceEEeCCCHHHHHHHHHhCCccc
Confidence                355677 577765444 56666777776543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.57  E-value=7.7e-16  Score=140.05  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=41.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcccccChh
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIA   67 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~   67 (431)
                      ||+|||||++||+||.+|+++|+ +|+||||++++||+++|++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~   46 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA   46 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEET
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccC
Confidence            89999999999999999999996 699999999999999997653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.51  E-value=1.8e-14  Score=132.25  Aligned_cols=59  Identities=19%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+.+.+|.   ..+.++|.+.+++.|++++.+++|++|..+  +++ +.|++++| +++||+||+.
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~--~~~-v~V~t~~g-~i~a~~VViA  200 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDIS--PDS-VKIETANG-SYTADKLIVS  200 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEEC--SSC-EEEEETTE-EEEEEEEEEC
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEE--CCE-EEEEECCc-EEEcCEEEEC
Confidence            44566664   578899999999999999999999999986  555 57887766 6999999854

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.50  E-value=1.9e-14  Score=129.83  Aligned_cols=67  Identities=21%  Similarity=0.324  Sum_probs=54.1

Q ss_pred             EeecCC-cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCCCCCCC
Q 014049          272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (431)
Q Consensus       272 ~~p~gG-~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~  340 (431)
                      .+|... ...+.++|.+.+++.|++|+++++|++|..+  ++++.+|.+++|++++||.||+ +....++.
T Consensus       102 ~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         102 MFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYE--NGQTKAVILQTGEVLETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTCCEEECSCEEECCCCSSSGG
T ss_pred             eecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEE--CCEEEEEEeCCCCeEecCeEEEccCCccccc
Confidence            345443 4678899999999999999999999999988  7888889999999999999885 44333343

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=137.01  Aligned_cols=73  Identities=16%  Similarity=0.228  Sum_probs=60.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      +.+|||||||++||+||..|+++|++|+|||+++++|||++|++.+                                  
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~----------------------------------   50 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKG----------------------------------   50 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEET----------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeC----------------------------------
Confidence            4689999999999999999999999999999999999999998653                                  


Q ss_pred             cCCCCceeeecCCCeEEeeCc--hHHHHHHhcCcc
Q 014049          102 SQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGAS  134 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~--~~~~~l~~~~~~  134 (431)
                           ++.+|+ |++++....  .+.+++.+.|++
T Consensus        51 -----g~~~d~-G~~~i~~~~~~~~~~l~~~lgl~   79 (449)
T d2dw4a2          51 -----NYVADL-GAMVVTGLGGNPMAVVSKQVNME   79 (449)
T ss_dssp             -----TEEEES-SCCEECCSBTCHHHHHHHHHTCC
T ss_pred             -----CEEEEC-CCEEECCCCCcHHHHHHHHcCCc
Confidence                 355777 688775433  566777777764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.3e-14  Score=131.79  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=43.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChh
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA   67 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~   67 (431)
                      +|||||||||++||+||..|+++|++|+|+|+++++||+|.|....
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~   46 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCE   46 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEET
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcC
Confidence            4899999999999999999999999999999999999999997543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.41  E-value=4.9e-12  Score=117.10  Aligned_cols=60  Identities=25%  Similarity=0.273  Sum_probs=50.6

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+++..|.   ..+.++|.+.++..|++|+.+++|++|..+  ++++++|++++| +++||+||..
T Consensus       137 ~~~~~~g~~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~--~~~v~~V~T~~g-~i~a~~VV~a  199 (305)
T d1pj5a2         137 LHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS--GGRVTGVQTADG-VIPADIVVSC  199 (305)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE--TTEEEEEEETTE-EEECSEEEEC
T ss_pred             eecccccccchhhhhhhHHhhhhcccccccCCceEEEEEEe--CCEEEEEeccce-eEECCEEEEe
Confidence            44555553   578899999999999999999999999998  889999998666 6999999853

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.40  E-value=5.2e-13  Score=124.43  Aligned_cols=101  Identities=15%  Similarity=0.245  Sum_probs=70.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccChhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL  101 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (431)
                      ...|+|||||++||+||..|+++|++|+|+|+++++||++.|+....                                 
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~---------------------------------   48 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE---------------------------------   48 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT---------------------------------
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC---------------------------------
Confidence            35799999999999999999999999999999999999999875321                                 


Q ss_pred             cCCCCceeeecCCCeEEeeCch-HHHHHHhcCcccccccccccceeeeccCCceeecCCChhhh
Q 014049          102 SQHPRNFNLDVSGPRVLFCADH-AVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAI  164 (431)
Q Consensus       102 ~~~~~~~~~dl~Gp~~~~~~~~-~~~~l~~~~~~~~~~f~~~~~~~~~~~~g~~~~~p~~~~~~  164 (431)
                         ...+..|. ||+++....+ +.+.+.+     +.+|...........+|+.+++|.+...+
T Consensus        49 ---~g~~~~~~-Gphif~t~~~~v~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~P~~~~~i  103 (314)
T d2bi7a1          49 ---TNVMVHVY-GPHIFHTDNETVWNYVNK-----HAEMMPYVNRVKATVNGQVFSLPINLHTI  103 (314)
T ss_dssp             ---TCCEEETT-SCCCEEESCHHHHHHHHT-----TSCEEECCCCEEEEETTEEEEESCCHHHH
T ss_pred             ---CCceEEec-CceeecCccHHHHHHHHH-----hhhhhhhccccceeecceeeccCccHHHH
Confidence               11334456 7988866653 4444432     23444332222222378899999876544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.39  E-value=6e-13  Score=120.16  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             EEeecCCcchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE-CCCCCCCC
Q 014049          271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG  340 (431)
Q Consensus       271 ~~~p~gG~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~-~p~~~~~~  340 (431)
                      ..++......+.+.|.+.++..|++|+++++|++|...+++..+..+...++++++||.||+ +....+|.
T Consensus       101 ~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG~S~p~  171 (253)
T d2gqfa1         101 QLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPG  171 (253)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCCSSCGG
T ss_pred             ccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCcccccc
Confidence            34566677889999999999999999999999999886433333344456888999999885 34333444

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.38  E-value=2.9e-13  Score=123.55  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=47.7

Q ss_pred             EEeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       271 ~~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .+.+..|.   ..+.++|.+.+..+|++|+.+++|++|..+   ++.++|++++| +|.||+||+.
T Consensus       140 ~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~~~V~t~~g-~i~a~~vV~A  201 (276)
T d1ryia1         140 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD---GEALFIKTPSG-DVWANHVVVA  201 (276)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS---SSSEEEEETTE-EEEEEEEEEC
T ss_pred             EEeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEee---cceEEEecCCe-EEEcCEEEEC
Confidence            45566663   578899999999999999999999999754   45679998766 6999999854

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.31  E-value=3.1e-11  Score=111.75  Aligned_cols=43  Identities=23%  Similarity=0.447  Sum_probs=39.9

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .++|||||||+|++||+||+.|+++|++|+||||++..||.+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            4679999999999999999999999999999999999998654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.19  E-value=4.6e-10  Score=104.47  Aligned_cols=43  Identities=23%  Similarity=0.434  Sum_probs=39.6

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .+++||||||+|++||+||+.|+++|++|+||||.+..||.+.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            4568999999999999999999999999999999999998644

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.18  E-value=6.1e-10  Score=103.43  Aligned_cols=60  Identities=22%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             EeecCCc---chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC--CCc--EEEeCEEEE
Q 014049          272 IYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL  332 (431)
Q Consensus       272 ~~p~gG~---~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~--~G~--~i~Ad~VI~  332 (431)
                      .++.+|.   .+|.++|.+.+++.|++++++++|.++.++ ++++++||...  +++  ++.|+.||+
T Consensus       138 ~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~-~~g~V~Gv~~~~~~~~~~~i~Ak~VVl  204 (317)
T d1qo8a2         138 HRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVL  204 (317)
T ss_dssp             EECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             cccccccccchhhhHHHHHHhhhccceeeeccchhheeec-ccccceeeEeecccceEEEEeccceEE
Confidence            3455553   368999999999999999999999999886 37889988754  343  478999885

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1.1e-10  Score=98.53  Aligned_cols=41  Identities=27%  Similarity=0.421  Sum_probs=39.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+|+|||||++||+||..|+++|++|+|+|+.+.+||...
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            46899999999999999999999999999999999999765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=6.6e-11  Score=104.70  Aligned_cols=46  Identities=17%  Similarity=0.239  Sum_probs=42.2

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      |.++|||+|||||.+||+||.+|++.|++|+|+|+++.+||.|...
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~   47 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNV   47 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEe
Confidence            4468999999999999999999999999999999999999987643

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.94  E-value=2.3e-10  Score=100.29  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=41.1

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      ++|||||||||.+||+||.++++.|++|+|+|+++.+||.|...
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~   45 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNV   45 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecc
Confidence            46999999999999999999999999999999999999987653

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=3.4e-10  Score=103.16  Aligned_cols=42  Identities=17%  Similarity=0.135  Sum_probs=39.3

Q ss_pred             cccEEEECCChhHHHHHHHHhh-CCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~-~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ++||||||||++||+||+.|++ .|++|+|+|+++.+||.+..
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            6899999999999999999987 59999999999999998765

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.87  E-value=4.1e-10  Score=99.45  Aligned_cols=44  Identities=20%  Similarity=0.275  Sum_probs=40.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..+|||||||||.+||+||.+|+++|++|+|+|++..+||.+..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~   47 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLN   47 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHH
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeec
Confidence            45799999999999999999999999999999999999997654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.86  E-value=6.1e-10  Score=102.29  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=40.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +.+||||||||++||++|..|.++|.+|+||||++.+||.+..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~   48 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   48 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccccccc
Confidence            5799999999999999999999999999999999999998754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=7.1e-10  Score=105.52  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=38.8

Q ss_pred             cccEEEECCChhHHHHHHHHhh------CCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASA------SGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~------~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||||||||++||+||+.|||      +|++|+||||+..+|....+
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~   79 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLS   79 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccc
Confidence            5999999999999999999998      89999999999999877543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.85  E-value=8.4e-10  Score=97.73  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=50.5

Q ss_pred             CCCCCCccCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccccc
Q 014049            2 TGNESESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~   64 (431)
                      +|.|.+..|....+++ .....+|+|||||++||+||..|++.|++|+|+|+++.+||.+...
T Consensus        30 ~~~e~~~~~~p~~~~~-~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~   91 (233)
T d1djqa3          30 AGEEYRRGWHPEKFRQ-TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV   91 (233)
T ss_dssp             TTTHHHHCCCSSCCCC-CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             cChHHhcCCCCCccCc-ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccc
Confidence            3555555555444444 4567899999999999999999999999999999999999987653

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=5.2e-09  Score=80.26  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             CCeEEEEEEEeCCCCCCCC--CceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEcCCCC
Q 014049          362 KGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPH  427 (431)
Q Consensus       362 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~~~p~  427 (431)
                      +.+++|++||+++|+.+..  .+.++++|+...+.  .++||+.+.|++++.||+|++++|++|..++
T Consensus         2 ~~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~~--~~~v~vl~~ss~~~vCP~G~yv~~~St~~t~   67 (113)
T d1vg0a2           2 YRQISRAVLITDGSVLRTDADQQVSILTVPAEEPG--SFAVRVIELCSSTMTCMKGTYLVHLTCMSSK   67 (113)
T ss_dssp             CEEEEEEEEEESSCSSCCSCCCCCEEEEECCSSTT--SCCEEEEEECGGGTSSCTTCEEEEEEEECSS
T ss_pred             cEEEEEEEEEECCCCCCCCCCccEEEeecCcccCC--CCCEEEEEecCCcccCCCCCEEEEEEEcCCC
Confidence            5679999999999986532  34566666554443  7899999999999999999999999997654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.82  E-value=1.2e-09  Score=95.86  Aligned_cols=42  Identities=21%  Similarity=0.242  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ++|||||||||.+||+||.+|+++|++|+|+|+....||+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            579999999999999999999999999999999988877654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=8.7e-10  Score=96.36  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=38.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+|||||||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~~   42 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCVN   42 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEec
Confidence            3699999999999999999999999999999995 68996643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.80  E-value=2.1e-09  Score=96.12  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      +.++.+|||||||++||++|+.|+++|++|+|+||+...+|.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~   44 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCc
Confidence            445679999999999999999999999999999998754443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.77  E-value=2.3e-09  Score=101.30  Aligned_cols=43  Identities=14%  Similarity=0.225  Sum_probs=37.7

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      |+.+|||||||+|.+|+++|.+|+++|++|+|||+....++..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            3467999999999999999999999999999999976665543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.73  E-value=2.5e-09  Score=99.79  Aligned_cols=52  Identities=15%  Similarity=0.199  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCcE--EEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~~--i~Ad~VI~  332 (431)
                      ..+..+|.+.+...|.+|+.+++|.++..+  +++++++..   .+|+.  +.|+.||+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~--~~~v~g~~~~~~~~g~~~~i~Ak~Vvl  214 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ--DGKCYGAVVRDLVTGDIIAYVAKGTLI  214 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE--TTEEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc--cccccceeEEeccCCcEEEEecCeEEE
Confidence            468899999999999999999999999988  788877754   35764  78999985

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=5.4e-09  Score=92.27  Aligned_cols=40  Identities=30%  Similarity=0.249  Sum_probs=36.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      +|||||||||.+||+||.++++.|++|+|+|+++..|...
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~   42 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGT   42 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCccc
Confidence            6999999999999999999999999999999987755433

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=4.2e-09  Score=97.00  Aligned_cols=43  Identities=16%  Similarity=0.314  Sum_probs=36.9

Q ss_pred             CCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        18 ~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      |.+.+|||||||+|++||+||+.++++| +|+||||.+..||.+
T Consensus         3 ~p~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           3 LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             CCSEECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             CCcccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            4456899999999999999999999988 999999999888864

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=5.7e-09  Score=88.38  Aligned_cols=40  Identities=15%  Similarity=0.405  Sum_probs=36.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .|||||||||.+||.||.++++.|.+|+++|++  +||++..
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~~   40 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQILD   40 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCcccc
Confidence            399999999999999999999999999999975  7887663

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=2.7e-09  Score=94.27  Aligned_cols=41  Identities=17%  Similarity=0.167  Sum_probs=38.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC-------CcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASG-------KSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G-------~~V~vlE~~~~~GG~~~t   63 (431)
                      ++|+|||||++||+||.+|+++|       ++|+|+||++++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            68999999999999999999999       589999999999997753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6e-09  Score=91.04  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=36.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      .+||+||||||.+|++||.++++.|++|+|+|+ +.+||.|.
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c~   42 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTCV   42 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCccc
Confidence            369999999999999999999999999999998 46677554

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=1.2e-08  Score=94.07  Aligned_cols=42  Identities=14%  Similarity=0.129  Sum_probs=39.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+||+|||+|++||+||..|+++  |++|+|+|+++++||.++.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            58999999999999999999964  9999999999999998865

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.64  E-value=1.2e-08  Score=91.41  Aligned_cols=39  Identities=18%  Similarity=0.139  Sum_probs=35.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      +..+|+|||||++||+||..|+++|++|+||||++.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            345899999999999999999999999999999987653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.63  E-value=1.1e-08  Score=91.89  Aligned_cols=46  Identities=33%  Similarity=0.435  Sum_probs=41.9

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..+..+||+||||||.+|+.||..|++.|.+|+++|+++.+||.|-
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            3345689999999999999999999999999999999999999774

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.63  E-value=5.3e-08  Score=69.96  Aligned_cols=64  Identities=22%  Similarity=0.261  Sum_probs=57.1

Q ss_pred             CCeEEEEEEEeCCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEcCCCC
Q 014049          362 KGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLPH  427 (431)
Q Consensus       362 ~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~~~p~  427 (431)
                      .|++.|++||++.|++.  +.++.++++|+.+++.  .+.|||...|+...+||+|+++.+++|-+--
T Consensus         3 ~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~R--k~DIYv~~~S~~h~V~~kg~yiaiVST~vET   68 (97)
T d1d5ta2           3 AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNR--KSDIYVCMISYAHNVAAQGKYIAIASTTVET   68 (97)
T ss_dssp             EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTCEEEEEEEECCS
T ss_pred             ccEEEEEEEEecCCcCCCCCCccEEEEeehHHhcc--CCCEEEEEeccccccCCCCeEEEEEEEEEec
Confidence            47899999999999864  4578999999999887  7899999999989999999999999998743

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.62  E-value=7.8e-09  Score=90.28  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      +|||||||||.+||+||.++++.|++|+|+|+.. +||.|..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~~   43 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCLN   43 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCcceec
Confidence            5999999999999999999999999999999964 6775543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.62  E-value=1.4e-08  Score=94.74  Aligned_cols=45  Identities=22%  Similarity=0.243  Sum_probs=39.4

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCCCCccccc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t~   64 (431)
                      +....|+|||||++||+||..|+++|  ++|+|+||++.+||.+..-
T Consensus         2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~   48 (335)
T d2gv8a1           2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYT   48 (335)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCC
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCccccc
Confidence            34457999999999999999998877  5999999999999988653

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=1.3e-08  Score=88.50  Aligned_cols=39  Identities=15%  Similarity=0.212  Sum_probs=34.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC-CCCCCc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH   60 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~-~~~GG~   60 (431)
                      .|||||||||++|+.||.++||+|.+|+++|++ +.+|+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~   41 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP   41 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccc
Confidence            599999999999999999999999999999998 445443

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=7.1e-09  Score=96.60  Aligned_cols=43  Identities=28%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ...+|||||||+|++||+||..++++|++|+|+||.+..||.+
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            3457999999999999999999999999999999999888753

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.60  E-value=9.6e-09  Score=92.23  Aligned_cols=40  Identities=25%  Similarity=0.344  Sum_probs=36.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      ||+||||+|.+|+.||.++++.|++|+++|++ .+||.|..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~n   41 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCVN   41 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEEe
Confidence            89999999999999999999999999999985 58997743

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.60  E-value=1.2e-08  Score=87.26  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCc-EEEEccCCCCCCccccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSL   64 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~-V~vlE~~~~~GG~~~t~   64 (431)
                      ..|+|||||++||+||..|+++|++ |+|+||+++.||..+..
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~   47 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSE   47 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHT
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhh
Confidence            5799999999999999999999985 99999999999977654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.58  E-value=1.4e-08  Score=95.25  Aligned_cols=56  Identities=21%  Similarity=0.205  Sum_probs=43.1

Q ss_pred             CccCCCCCCCCCCCCcccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCccc
Q 014049            7 ESELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus         7 ~~~~~~~~~~~~~~~~~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~~   62 (431)
                      .++++-..-.+...-++||||||+|++||+||+.|++    +|.+|+||||....||.+.
T Consensus         6 ~~~~~~~~~~~~e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2           6 KYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             SCCCCCGGGSCEEEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             chhhhccccCCceEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            3444443333434447999999999999999999975    7999999999988877653

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=7.1e-08  Score=69.28  Aligned_cols=63  Identities=22%  Similarity=0.350  Sum_probs=56.0

Q ss_pred             CCe-EEEEEEEeCCCCCC--CCCceEEEeCCCCCCCCCCCeEEEEEecCCCccCCCCcEEEEEEcCCC
Q 014049          362 KGK-VARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMVSLDLLSPLP  426 (431)
Q Consensus       362 ~~~-~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~aP~G~~~~~i~~~~p  426 (431)
                      .|+ +.|++||++.|++.  +.++.++++|..+++.  .+.|||...|+...+||+|+++.+++|-+-
T Consensus         3 ~GqkViRaICIl~hPipnt~~a~S~QIIiPq~Qv~R--k~DIYv~~~S~~h~V~~kg~yiAiVST~vE   68 (98)
T d2bcgg3           3 TGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGR--KSDIYVAIVSDAHNVCSKGHYLAIISTIIE   68 (98)
T ss_dssp             EEEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTC--SSCEEEEEEEGGGTSSCTTCEEEEEEEECC
T ss_pred             ccceEEEEEEEecCCcCCCCCCceEEEEEehHHhCC--CcCEEEEEeccccccCCCCcEEEEEEEEee
Confidence            354 99999999999864  4578999999999887  789999999999999999999999999874

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.57  E-value=1.9e-08  Score=95.02  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      -+++||||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            45799999999999999999999999999999994

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.56  E-value=1.2e-08  Score=89.20  Aligned_cols=42  Identities=19%  Similarity=0.240  Sum_probs=37.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t   63 (431)
                      .+||+||||||.+|+.||..+++.|.+|+|+|++ .+||.|..
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~~   45 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCLN   45 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcccc
Confidence            3699999999999999999999999999999986 57886643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.56  E-value=1.5e-08  Score=89.09  Aligned_cols=41  Identities=10%  Similarity=-0.059  Sum_probs=37.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~~t   63 (431)
                      ..|+|||||++||+||.+|+++  |++|+|+|+++++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            3799999999999999999886  7899999999999997664

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.55  E-value=2.1e-08  Score=90.48  Aligned_cols=43  Identities=16%  Similarity=0.230  Sum_probs=38.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCCCCcccccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~   65 (431)
                      +||+|||||++||++|..|+++|. +|+|+||++.++...+...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~   45 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGIN   45 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEE
Confidence            699999999999999999999996 9999999999886555443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.51  E-value=2.1e-08  Score=93.73  Aligned_cols=46  Identities=15%  Similarity=0.215  Sum_probs=38.6

Q ss_pred             CcccEEEECCChhHHHHHHHHh-----hCCCcEEEEccCCCC--CCcccccCh
Q 014049           21 TAFDLIVIGTGLPESVISAAAS-----ASGKSVLHLDPNPFY--GSHFSSLSI   66 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La-----~~G~~V~vlE~~~~~--GG~~~t~~~   66 (431)
                      +.|||+|||||++||++|..|+     ++|++|+||||++.+  .|+..++..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~~~r~~~l~~   58 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQC   58 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCCSCSCCEECH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCcCCeEEEECH
Confidence            4699999999999999999996     689999999999766  455555543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=3.1e-08  Score=84.33  Aligned_cols=45  Identities=11%  Similarity=0.108  Sum_probs=38.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      +..||+|||+|.+||.||.+|+|.|.+|+|+|+++.-|.+..+-.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~   48 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTE   48 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccch
Confidence            357999999999999999999999999999999877665555433

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.47  E-value=4.4e-08  Score=92.28  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      .||||||+|++|+++|.+|+++|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            69999999999999999999999999999994

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.44  E-value=6e-08  Score=91.26  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=32.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      +.||+||||+|.+|+++|.+|+++|++|+|||+.
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            3699999999999999999999999999999996

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.43  E-value=4.2e-08  Score=86.71  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYG   58 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~~G   58 (431)
                      .+|||||||+|.+|++||.++++.| ++|+|+|+....|
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            4799999999999999999999998 5699999987643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.43  E-value=5.6e-08  Score=88.37  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=32.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +.||+|||||++||++|..|+++|++|+||||++.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            36999999999999999999999999999999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.41  E-value=7.4e-08  Score=84.67  Aligned_cols=35  Identities=31%  Similarity=0.310  Sum_probs=31.3

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      .+|||||||||.+||+||.++++.|. +|+|+|+..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            46999999999999999999999885 688998863

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.40  E-value=6.7e-08  Score=82.39  Aligned_cols=38  Identities=13%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..++||+|||||.+||.||.+|+|+|.+|+|+|+....
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            34689999999999999999999999999999987764

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.28  E-value=2.5e-07  Score=87.74  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=32.8

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (431)
                      ++||+||||+|.+|+++|.+|+++| ++|+|||+...
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            4699999999999999999999987 89999999643

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.26  E-value=2.9e-07  Score=87.50  Aligned_cols=36  Identities=22%  Similarity=0.426  Sum_probs=33.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (431)
                      ++||+||||||.+|+++|.+|+++| ++|+|||+...
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            4699999999999999999999999 79999999865

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.6e-07  Score=86.44  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=36.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--CCcEEEEccCCCCCCcc
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--G~~V~vlE~~~~~GG~~   61 (431)
                      ++||||||+|++||+||+.++++  |.+|+|+||....||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            68999999999999999999987  67899999998887763

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=98.17  E-value=3.6e-07  Score=85.49  Aligned_cols=36  Identities=22%  Similarity=0.415  Sum_probs=32.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..||+||||+|.+|+++|.+||++ ++|+|||+.+..
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            369999999999999999999987 999999998653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.93  E-value=3.7e-07  Score=80.16  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=32.1

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .|+|||||+.||++|+.|+++|++|+++|+.+.++.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            599999999999999999999999999998665543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.89  E-value=7.9e-06  Score=63.11  Aligned_cols=38  Identities=26%  Similarity=0.181  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -+++|||||+.|+-+|..|++.|.+|+++|+.+++...
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~   60 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG   60 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceeccc
Confidence            47999999999999999999999999999999998754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=2.4e-06  Score=74.80  Aligned_cols=40  Identities=18%  Similarity=0.151  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCC---CcEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G---~~V~vlE~~~~~GG~~~t   63 (431)
                      -+|||||+|.+|++||.++++.|   ++|+++|+ +.+||.|..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cln   44 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAVL   44 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceeec
Confidence            47999999999999999887765   67999998 578886543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.82  E-value=9.4e-06  Score=63.04  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=36.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ..++|||||+.|+-+|..|++.|++|+++|+++++-++.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~   69 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRA   69 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccccccc
Confidence            579999999999999999999999999999999987654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.81  E-value=1e-05  Score=63.10  Aligned_cols=39  Identities=23%  Similarity=0.217  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ..|+|||||+.|+-+|..|++.|++|+++|+.+++-++.
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~   69 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVY   69 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTT
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccc
Confidence            479999999999999999999999999999999986554

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.79  E-value=1.1e-05  Score=63.71  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=36.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      ..++|||||+.|+-+|..|++.|.+|+++|+++++..+.-
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~   75 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVT   75 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccccc
Confidence            5799999999999999999999999999999999876643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.79  E-value=9.3e-06  Score=63.22  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=34.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .+++|||||+.|+-+|..|++.|++|+++|+++++.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~   69 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG   69 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC
Confidence            4699999999999999999999999999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=1.7e-05  Score=61.04  Aligned_cols=38  Identities=11%  Similarity=0.042  Sum_probs=35.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..++|||+|+.|+-+|..|++.|.+|+++|+.+++...
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~   59 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS   59 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh
Confidence            36999999999999999999999999999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.73  E-value=1.8e-05  Score=60.83  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=34.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      .++|||||+.|+-+|..|++.|++|+++|+.+++.-.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~   59 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT   59 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc
Confidence            6999999999999999999999999999999998743

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.70  E-value=1.6e-05  Score=61.31  Aligned_cols=36  Identities=8%  Similarity=0.022  Sum_probs=34.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||||+.|+-+|..|++.|.+|+++|+.+++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            479999999999999999999999999999999985

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.8e-05  Score=59.83  Aligned_cols=37  Identities=14%  Similarity=0.065  Sum_probs=34.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||+|+.|+-+|..|++.|.+|+++|+++++-.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~   59 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR   59 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc
Confidence            4799999999999999999999999999999998853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.57  E-value=4.1e-05  Score=59.10  Aligned_cols=38  Identities=21%  Similarity=0.153  Sum_probs=35.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -+++|||||+.|+-.|..|++.|.+|+++|+++++--.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~   60 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA   60 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc
Confidence            47999999999999999999999999999999998543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=4.6e-05  Score=59.06  Aligned_cols=38  Identities=24%  Similarity=0.316  Sum_probs=35.4

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ..++|||||..|+-.|..|++.|.+|+++|+++++-..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~   61 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS   61 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh
Confidence            37999999999999999999999999999999998754

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.47  E-value=3.3e-05  Score=63.82  Aligned_cols=41  Identities=20%  Similarity=0.300  Sum_probs=35.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCCCCCCcccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYGSHFSS   63 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~~~GG~~~t   63 (431)
                      ..|||||||.+|+.+|..|++.|.  +|+++|+++.+.+....
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~   45 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLS   45 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTH
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccc
Confidence            379999999999999999999985  79999999987665443

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.42  E-value=4.3e-05  Score=59.35  Aligned_cols=38  Identities=18%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -.++|||||+.||-.|..|++.|.+|+|+|+++++-..
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~   63 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPT   63 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCch
Confidence            37999999999999999999999999999999998643

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=9.7e-05  Score=54.13  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=32.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      ..|+|+|.|.+|+++|.+|++.|.+|++.|.+...
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            46999999999999999999999999999997653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.26  E-value=0.00011  Score=60.94  Aligned_cols=40  Identities=18%  Similarity=0.057  Sum_probs=35.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCccc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS   62 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~   62 (431)
                      -||||||||..|+-+|..|++.|.+|+|++..++......
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~   43 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH   43 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchh
Confidence            4899999999999999999999999999999887755444

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.26  E-value=0.00017  Score=56.01  Aligned_cols=39  Identities=15%  Similarity=0.071  Sum_probs=36.0

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      -.++|||+|+.|+-.|..|++.|.+|+++|+.+++....
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~   65 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGA   65 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTS
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccc
Confidence            479999999999999999999999999999999887653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.25  E-value=0.00049  Score=52.56  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=45.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.++++++.|++|..+. +++ ..|++++|+++.||.||.+
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~-~~~-~~v~~~~G~~i~~D~Vi~A  116 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNA-DGS-KSVTFESGKKMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcC-CCe-EEEEECCCcEEEeCEEEEe
Confidence            5788999999999999999999999998652 444 4688999999999999853

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.24  E-value=0.00016  Score=55.74  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..++|||+|+.|+-.|..|++.|.+|+++|+++++.
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            479999999999999999999999999999999876

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.22  E-value=0.00054  Score=53.62  Aligned_cols=55  Identities=7%  Similarity=0.028  Sum_probs=47.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++.+.+.+..++.|.++++++.|++|....+++++..|.+++|+++.||.||+.
T Consensus        77 ~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a  131 (133)
T d1q1ra2          77 PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAG  131 (133)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEEC
T ss_pred             hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEe
Confidence            3567777788899999999999999998864466778899999999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.00022  Score=55.00  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      .++|||||..|+-.|..|++.|.+|++++++...
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l   55 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILL   55 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEechhh
Confidence            6999999999999999999999999999976544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.17  E-value=0.00013  Score=60.10  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=31.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|+|||||..|..+|.+|+++|++|+|+|++..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            4699999999999999999999999999999865

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00014  Score=62.13  Aligned_cols=38  Identities=21%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCc--EEEEccCCCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKS--VLHLDPNPFY   57 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~--V~vlE~~~~~   57 (431)
                      ++++++||||||++|+.+|..|.+.|++  |+++++.+++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            4679999999999999999999998874  9999887664

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.08  E-value=0.0002  Score=58.30  Aligned_cols=35  Identities=17%  Similarity=0.226  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      .|+|||||++|+-+|..|++ +.+|+|+|+++++.-
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~   36 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY   36 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc
Confidence            58999999999999999975 789999999887643

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.04  E-value=0.00098  Score=50.73  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.++++++.|++|..+. ++ ...|.+++|+++.||.||.+
T Consensus        62 ~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~-~g-~~~v~~~~g~~i~~D~Vi~a  114 (117)
T d1feca2          62 SELRKQLTEQLRANGINVRTHENPAKVTKNA-DG-TRHVVFESGAEADYDVVMLA  114 (117)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECT-TS-CEEEEETTSCEEEESEEEEC
T ss_pred             chhhHHHHHHHhhCcEEEEcCCEEEEEEECC-CC-EEEEEECCCCEEEcCEEEEe
Confidence            5788999999999999999999999998752 44 45788899999999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0011  Score=50.43  Aligned_cols=53  Identities=11%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++++.+.+.+++.|.++++++.|++|..+. ++. +.|++++|+++.+|.||.+
T Consensus        62 ~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~-~~~-~~v~~~~g~~~~~D~vi~a  114 (116)
T d1gesa2          62 PMISETLVEVMNAEGPQLHTNAIPKAVVKNT-DGS-LTLELEDGRSETVDCLIWA  114 (116)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECT-TSC-EEEEETTSCEEEESEEEEC
T ss_pred             hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CcE-EEEEECCCCEEEcCEEEEe
Confidence            5788889999999999999999999998762 344 5688899999999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.97  E-value=0.00031  Score=58.10  Aligned_cols=33  Identities=27%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..+.|||+|-.|+..|..|+++|++|.++++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            358999999999999999999999999999865

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.94  E-value=0.00027  Score=59.35  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCC--CcEEEEccCCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFY   57 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~~~   57 (431)
                      .|+|||||.+|+.+|..|++.+  .+|+++|+++++
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            5999999999999999999974  579999999877

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0016  Score=51.11  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=44.1

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++++.+.+.+++.|.++++|+.|++|..+  +++ +.|+++||+++.||.||..
T Consensus        83 ~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~-~~v~l~~G~~i~aD~Vi~A  134 (137)
T d1m6ia2          83 EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGK-LLIKLKDGRKVETDHIVAA  134 (137)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTE-EEEEETTSCEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCcEEEeCCEEEEEEec--CCE-EEEEECCCCEEECCEEEEe
Confidence            357777788889999999999999999876  555 4688999999999999964

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.89  E-value=0.00046  Score=52.70  Aligned_cols=36  Identities=8%  Similarity=0.043  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La---~~G~~V~vlE~~~~~G   58 (431)
                      ..++|||||+.|+-+|..|+   ++|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            47999999999999997655   5567899999999874

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.78  E-value=0.00024  Score=58.89  Aligned_cols=38  Identities=18%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      -.|+|||||.+|+-+|..|++.|.+|.+++..++....
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~   41 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   41 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccc
Confidence            35999999999999999999999999888887776543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00063  Score=55.18  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=31.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||+|-.|...|..|+++|++|+++.+++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            589999999999999999999999999999775

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.75  E-value=0.00054  Score=57.84  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||.|..||..|+.||++|++|..+|.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            48999999999999999999999999999874

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.69  E-value=0.00079  Score=54.11  Aligned_cols=42  Identities=10%  Similarity=0.142  Sum_probs=35.6

Q ss_pred             cEEEE--CCChhHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049           24 DLIVI--GTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        24 DviII--GaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      .|+||  |+|..|+.+|..|++.|.+|+++|+.++++-..-...
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~~   84 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTLE   84 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTTC
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchhH
Confidence            55555  9999999999999999999999999999876554433

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00081  Score=52.86  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=33.9

Q ss_pred             ccEEEECCChhHHHHHHHHhh----CCCcEEEEccCCCCCCcc
Q 014049           23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~----~G~~V~vlE~~~~~GG~~   61 (431)
                      ..++|||||+.|+-+|..|++    .|.+|+++|+++++.++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            479999999999999988864    599999999999987654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.67  E-value=0.00088  Score=51.03  Aligned_cols=37  Identities=14%  Similarity=0.038  Sum_probs=31.6

Q ss_pred             ccEEEECCChhHHHHHHHHh---hCCCcEEEEccCCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La---~~G~~V~vlE~~~~~GG   59 (431)
                      ..++|||||+.|+-+|..|+   +.|.+|+++|+.+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccccccc
Confidence            37999999999999997654   45999999999998864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.48  E-value=0.0014  Score=52.53  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=36.4

Q ss_pred             CCCCCCcccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           16 PPIEPTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        16 ~~~~~~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      |+++..+..|.|||+|-.|.++|..|+..|. ++.++|.+.
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            7888889999999999999999999999996 799999776

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.37  E-value=0.0016  Score=50.70  Aligned_cols=33  Identities=18%  Similarity=0.311  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|+|+|+|--|...|..|.++|++|+++|++..
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            589999999999999999999999999999653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.37  E-value=0.0059  Score=46.21  Aligned_cols=53  Identities=8%  Similarity=0.021  Sum_probs=44.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEE-eCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL-SHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~-Ad~VI~~  333 (431)
                      .++++.+.+.++..|.++++++.|++|.... ++. +.|++++|+++. +|.||.+
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~-~~~-~~v~~~~G~~~~~~D~Vi~A  116 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVS-DKN-LSIHLSDGRIYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESS-TTC-EEEEETTSCEEEEESEEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcC-CCe-EEEEECCCCEEEeCCEEEEe
Confidence            5788999999999999999999999998652 443 578899999885 6999853

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0017  Score=54.17  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=31.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|.|||||..|..-|..++++|++|+++|+++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4799999999999999999999999999998764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.0057  Score=46.69  Aligned_cols=53  Identities=17%  Similarity=0.228  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC-----cEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G-----~~i~Ad~VI~  332 (431)
                      .++++.+.+..++.|.+|++++.|++|..++ ++..+.+++.++     +++.||.||+
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~~~v~~~~~~~~~~~~~~ie~D~vlv  121 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRND-DKNVVEIVVEDTKTNKQENLEAEVLLV  121 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEET-TTTEEEEEEEETTTTEEEEEEESEEEE
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeC-CCcEEEEEEEeCCCCCeEEEEeCEEEE
Confidence            5888999999999999999999999998873 565556665543     4799999885

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.30  E-value=0.0013  Score=54.52  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      -.|.|||||..|...|..++++|++|+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999975

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.24  E-value=0.0029  Score=50.37  Aligned_cols=38  Identities=21%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             CCCCcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           18 IEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        18 ~~~~~~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      +++....|.||| .|.-|...|..|+++|++|.+++++.
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            445556899999 79999999999999999999999864

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.10  E-value=0.0026  Score=51.12  Aligned_cols=32  Identities=22%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      -.|+|||+|.+|+.|+..+.+-|-+|.++|.+
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            58999999999999999999999999999986

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.05  E-value=0.011  Score=44.52  Aligned_cols=52  Identities=15%  Similarity=0.144  Sum_probs=40.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEe-CCC--cEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL-ASG--QDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~-~~G--~~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.++++++.|++|..+  ++.. .|.+ .+|  +++.||.||++
T Consensus        63 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~--~~~~-~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          63 KQMAAIIKKRLKKKGVEVVTNALAKGAEER--EDGV-TVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEE--TTEE-EEEEEETTEEEEEEESEEEEC
T ss_pred             chhHHHHHHHHHhcCCEEEcCCEEEEEEEc--CCEE-EEEEEeCCCEEEEEeEEEEEC
Confidence            468888999999999999999999999876  4433 2332 455  46899999863

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.00  E-value=0.003  Score=51.05  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|.|||+|.-|.+.|..|+++|++|.++|++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            48999999999999999999999999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.95  E-value=0.0035  Score=51.09  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -.|+|||+|.+|+.||....+-|-+|.++|.+..
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            5899999999999999999999999999998853

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.91  E-value=0.003  Score=49.05  Aligned_cols=33  Identities=30%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+||||.|-.|...|..|.+.|++|+++|++..
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            589999999999999999999999999999753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.88  E-value=0.0051  Score=49.04  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY   57 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~~   57 (431)
                      -+|||||||-+++=+|..|.|.|. +|+++++++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            469999999999999999999985 58899887653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.87  E-value=0.0028  Score=52.62  Aligned_cols=35  Identities=17%  Similarity=0.159  Sum_probs=31.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+.+|.|||+|--|.+.|..|+++|++|.++.+++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            34579999999999999999999999999998764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.73  E-value=0.016  Score=43.93  Aligned_cols=49  Identities=22%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      -.++++.+.+..+++|.++++++.|+++.    ++   .|+++||+++.||.||.+
T Consensus        71 ~~~~~~~~~~~l~~~GV~i~~~~~v~~~~----~~---~v~l~dg~~i~~D~vi~a  119 (121)
T d1d7ya2          71 PATLADFVARYHAAQGVDLRFERSVTGSV----DG---VVLLDDGTRIAADMVVVG  119 (121)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEESCCEEEEE----TT---EEEETTSCEEECSEEEEC
T ss_pred             CHHHHHHHHHHHHHCCcEEEeCCEEEEEe----CC---EEEECCCCEEECCEEEEe
Confidence            35777888888899999999999999874    44   366899999999999854

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.67  E-value=0.01  Score=45.27  Aligned_cols=51  Identities=10%  Similarity=0.075  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.++++++.|++|.-   ++++..| +++|+++.||.||++
T Consensus        72 ~~~~~~~~~~l~~~gv~~~~~~~v~~i~~---~~~~~~v-~~dg~~i~~D~vi~a  122 (123)
T d1nhpa2          72 KEFTDVLTEEMEANNITIATGETVERYEG---DGRVQKV-VTDKNAYDADLVVVA  122 (123)
T ss_dssp             HHHHHHHHHHHHTTTEEEEESCCEEEEEC---SSBCCEE-EESSCEEECSEEEEC
T ss_pred             hhhHHHHHHHhhcCCeEEEeCceEEEEEc---CCCEEEE-EeCCCEEECCEEEEE
Confidence            46788888888999999999999999964   4555555 478999999999863

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.66  E-value=0.017  Score=43.70  Aligned_cols=53  Identities=11%  Similarity=0.128  Sum_probs=41.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC---cEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG---QDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G---~~i~Ad~VI~~  333 (431)
                      -.++.+.+.+..++.|.++++++.|++|..+  ++. +.|++.++   +++.||.||++
T Consensus        62 d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~~-v~v~~~~~~~~~~~~~D~vlvA  117 (119)
T d3lada2          62 DEQVAKEAQKILTKQGLKILLGARVTGTEVK--NKQ-VTVKFVDAEGEKSQAFDKLIVA  117 (119)
T ss_dssp             CHHHHHHHHHHHHHTTEEEEETCEEEEEEEC--SSC-EEEEEESSSEEEEEEESEEEEC
T ss_pred             cchhHHHHHHHHHhcCceeecCcEEEEEEEe--CCE-EEEEEEECCCCEEEECCEEEEe
Confidence            3688899999999999999999999999876  443 34554443   57999999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.42  E-value=0.017  Score=43.94  Aligned_cols=54  Identities=20%  Similarity=0.309  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC-C--cEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~-G--~~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.+|++|+.|++|..+ +++..+.++..+ |  +++.||.|+++
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~-~~~~~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTS-GDGVKLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECS-SSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEc-cCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence            578888999999999999999999999875 245344555443 3  35899999854

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.27  E-value=0.0067  Score=50.38  Aligned_cols=32  Identities=22%  Similarity=0.217  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||.|..||..|+.|+ .|++|+.+|-+..
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            5899999999999999887 5999999998865

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.01  E-value=0.01  Score=47.57  Aligned_cols=31  Identities=16%  Similarity=0.172  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      .|-|||.|.-|...|..|+++|++|.+++++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            4899999999999999999999999999976

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.96  E-value=0.01  Score=46.74  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCC--CcEEEEccCC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASG--KSVLHLDPNP   55 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G--~~V~vlE~~~   55 (431)
                      |+.+..|.|||+|.-|.++|..|+.+|  .++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            345678999999999999999999998  4799999875

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.71  E-value=0.011  Score=48.34  Aligned_cols=30  Identities=20%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEcc
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDP   53 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~   53 (431)
                      +|.|||+|--|.+.|..|+++|++|.+.-+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999999999999999999999844

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.65  E-value=0.032  Score=41.96  Aligned_cols=55  Identities=16%  Similarity=0.122  Sum_probs=42.6

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEE---eCCCcEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~---~~~G~~i~Ad~VI~~  333 (431)
                      -..+++.+.+..+..|.++++++.|++|..+ ++++...+.   ..+++++.||.||+.
T Consensus        62 d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~-~~~~~~~~~~~~~~~~~~i~~D~Vi~a  119 (121)
T d1mo9a2          62 DNETRAYVLDRMKEQGMEIISGSNVTRIEED-ANGRVQAVVAMTPNGEMRIETDFVFLG  119 (121)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEEC-TTSBEEEEEEEETTEEEEEECSCEEEC
T ss_pred             ccchhhhhhhhhhccccEEEcCCEEEEEEec-CCceEEEEEEEeCCCCEEEEcCEEEEE
Confidence            3467888888889999999999999999876 356654443   335678999999964

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.65  E-value=0.013  Score=47.95  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             cEEEE-CCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVI-GTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviII-GaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|+|| |+|--|.+.|..|+++|++|++..|+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            47898 789999999999999999999998864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.59  E-value=0.018  Score=46.83  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      -+|-|||-|..|...|..|.++|++|.+++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            478999999999999999999999999999865

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.59  E-value=0.016  Score=46.43  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      .|-|||.|.-|...|..|+++|++|.+++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4889999999999999999999999999985

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.45  E-value=0.014  Score=43.25  Aligned_cols=34  Identities=9%  Similarity=0.049  Sum_probs=29.9

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..+|+|||+|.+|.-.|..|++.+.+|+++-+++
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            3689999999999999999999999987776654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.30  E-value=0.021  Score=46.35  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      .+|-|||.|.-|...|..|.++|++|.+++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            36899999999999999999999999999875

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.19  E-value=0.025  Score=42.14  Aligned_cols=36  Identities=11%  Similarity=0.065  Sum_probs=32.0

Q ss_pred             CCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      +.+...|+|||+|-.|..-|..|.+.|.+|+|+...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            445678999999999999999999999999998654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.19  E-value=0.043  Score=41.72  Aligned_cols=55  Identities=7%  Similarity=0.119  Sum_probs=41.7

Q ss_pred             cchHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCC--cEEEeCEEEEC
Q 014049          278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVLD  333 (431)
Q Consensus       278 ~~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G--~~i~Ad~VI~~  333 (431)
                      -.++++.+.+..++.|.++++++.|+++..+ +++..+.++..+|  ++++||.|+++
T Consensus        66 d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~-~~g~~v~~~~~~g~~~~i~~D~vl~A  122 (125)
T d1ojta2          66 DRDLVKVWQKQNEYRFDNIMVNTKTVAVEPK-EDGVYVTFEGANAPKEPQRYDAVLVA  122 (125)
T ss_dssp             CHHHHHHHHHHHGGGEEEEECSCEEEEEEEE-TTEEEEEEESSSCCSSCEEESCEEEC
T ss_pred             hhhHHHHHHHHHHHcCcccccCcEEEEEEEc-CCcEEEEEEeCCCCeEEEEcCEEEEe
Confidence            3588899999999999999999999999877 2443333333333  47999999864

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.15  E-value=0.0013  Score=56.52  Aligned_cols=36  Identities=0%  Similarity=-0.052  Sum_probs=33.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..|+|||+|..|+-+|..|++.|.+|+++++++.++
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            578999999999999999999999999999999874

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.99  E-value=0.045  Score=43.51  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=30.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC--cEEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK--SVLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~   54 (431)
                      ...|.|||+|..|.++|..|+..|.  ++.++|.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4699999999999999999999998  79999987

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.61  E-value=0.026  Score=45.36  Aligned_cols=32  Identities=34%  Similarity=0.377  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            58999999999999999999999999999875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.59  E-value=0.021  Score=45.07  Aligned_cols=32  Identities=13%  Similarity=0.097  Sum_probs=29.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEc
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLD   52 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE   52 (431)
                      +...|+|||||-.|+.-|..|.++|.+|+|+-
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            45689999999999999999999999999994

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.034  Score=44.76  Aligned_cols=32  Identities=28%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      .|+|+|+|..|+.++..+...|. +|++.|+++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            58999999999999999999998 799999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.047  Score=41.54  Aligned_cols=37  Identities=16%  Similarity=0.069  Sum_probs=33.8

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG   58 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~G   58 (431)
                      ..+|+|||+|-+.+-.|..|++-+.+|+++-+++..-
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            3589999999999999999999999999999988653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.87  E-value=0.076  Score=42.06  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      +....|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            445689999999999999999999987  799998764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.054  Score=41.18  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=34.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..+|+|||+|-+.+-.|..|++-..+|+++-+++..-+
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            36999999999999999999999999999999887643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.81  E-value=0.049  Score=40.60  Aligned_cols=51  Identities=12%  Similarity=0.079  Sum_probs=37.5

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeC-CCcEEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~-~G~~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.++++++.|+++.    ++..+..... +++++.||.||.+
T Consensus        62 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~----~~~~~~~~~~~~~~~i~~D~vi~A  113 (115)
T d1lvla2          62 SELTAPVAESLKKLGIALHLGHSVEGYE----NGCLLANDGKGGQLRLEADRVLVA  113 (115)
T ss_dssp             HHHHHHHHHHHHHHTCEEETTCEEEEEE----TTEEEEECSSSCCCEECCSCEEEC
T ss_pred             chhHHHHHHHHHhhcceEEcCcEEEEEc----CCeEEEEEcCCCeEEEEcCEEEEe
Confidence            5688888898999999999999999983    4433222212 2357999999854

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.80  E-value=0.05  Score=42.77  Aligned_cols=33  Identities=15%  Similarity=0.120  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|.|||.|..|...|..|+++|++|++.+++..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            588999999999999999999999999987554

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.036  Score=43.99  Aligned_cols=26  Identities=23%  Similarity=0.175  Sum_probs=23.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcE
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSV   48 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V   48 (431)
                      ..|+|||+|..|+-+|..|++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            48999999999999999999999753

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.65  E-value=0.056  Score=43.23  Aligned_cols=32  Identities=22%  Similarity=0.480  Sum_probs=28.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      .|.|||.|+-|.+.|..|.++|+  +|..+|++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            58999999999999999999997  577788753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.56  E-value=0.061  Score=42.16  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=30.5

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      ....|.|||+|..|.++|..|+..|.  ++.++|.++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            34579999999999999999999986  699999764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.18  Score=37.87  Aligned_cols=54  Identities=13%  Similarity=-0.009  Sum_probs=39.3

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCc-EEEEEeCCCc------EEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLASGQ------DILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~-~~gV~~~~G~------~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.++++|+.|++|..+. +|. +..+....|+      .+.||.||..
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~-~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a  123 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKTL-SGLEVSMVTAVPGRLPVMTMIPDVDCLLWA  123 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEET-TEEEEEEEECCTTSCCEEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CeEEEEEEEccCCcCcCccccccCCEEEEE
Confidence            5788999999999999999999999998762 332 2223333443      4678988853

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.34  E-value=0.078  Score=40.49  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=35.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS   59 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG   59 (431)
                      ..||+|||+|-+.+-.|..|++--.+|+++-+++.+-+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            46999999999999999999999999999999998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.32  E-value=0.055  Score=43.30  Aligned_cols=33  Identities=15%  Similarity=0.144  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|+|+|+|..|+.++..+...|.+|.+++.++.
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            588999999999999888889999999999865

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.28  E-value=0.053  Score=43.23  Aligned_cols=32  Identities=25%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|+|+|+|..|+.++..+...|.+|.+.++++
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            68999999999999999999999999998763

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=92.24  E-value=0.25  Score=41.47  Aligned_cols=53  Identities=19%  Similarity=0.085  Sum_probs=38.7

Q ss_pred             HHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCCCCCC
Q 014049          285 FCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVP  339 (431)
Q Consensus       285 l~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~~~~~  339 (431)
                      +.+.+...-.--.....|..+..+  ++++++|++.+|++++|+.||++.-..+.
T Consensus        73 ~k~~l~~~~nL~i~q~~V~dli~e--~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          73 AKYLLEGLRPLHLFQATATGLLLE--GNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             HHHHHHTCTTEEEEECCEEEEEEE--TTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             HHHHHhhhcCHHHHhccceeeEec--ccceeeEEeccccEEEEeEEEEccCccee
Confidence            344444444445557788999887  88999999999999999999975443334

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.20  E-value=0.066  Score=44.24  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             CcccEEEEC-CChhHHHHHHHHhhCCCcEEEEccC
Q 014049           21 TAFDLIVIG-TGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        21 ~~~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ....|+|+| +|.-|...+..|.++|++|+++-|+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            345699999 6999999999999999999999875

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.079  Score=41.54  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=30.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .+||+|.|-.|...+..|.+.|++|+|+|.++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            59999999999999999999999999999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.79  E-value=0.071  Score=41.40  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=28.8

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      .|.|||+|-.|.++|..|+..|. ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            68999999999999999999886 889999765

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.78  E-value=0.13  Score=38.00  Aligned_cols=40  Identities=18%  Similarity=0.330  Sum_probs=34.6

Q ss_pred             CCCCCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        17 ~~~~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ++.+....|.|+|+|==|-..|....+-|++|.++|.++.
T Consensus         6 ~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           6 ALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            4455556899999999999999999999999999998754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.56  E-value=0.083  Score=41.47  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ++.|||+|.-|.+.|..|.++|++|.|.+++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            58899999999999999999999999998864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=91.52  E-value=0.096  Score=40.67  Aligned_cols=32  Identities=31%  Similarity=0.381  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      .|.|||+|..|.++|..|+.+|.  ++.++|.+.
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            68999999999999999999997  688888663

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=91.46  E-value=0.1  Score=40.47  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=28.7

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      .|.|||+|..|.++|..|...|.  ++.++|.+.
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            68999999999999999999987  799999766

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.90  E-value=0.096  Score=40.84  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      ..|.|||+|--|.++|..|...|.  ++.++|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            368999999999999999999885  788888764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.15  Score=40.74  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=30.2

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ..+|+|+|+|=++-+++..|++.|.+|.|+-|+
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            458999999999999999999999999999765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.75  E-value=0.11  Score=41.87  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~~   56 (431)
                      -|+|+|+|-.||.+...+...| .+|.++|.++.
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            3899999999999999999999 58999998765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.67  E-value=0.13  Score=39.74  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      +|.|||+|--|.++|..|+..|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            58999999999999999999984  899999876

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.59  E-value=0.09  Score=42.55  Aligned_cols=33  Identities=18%  Similarity=0.255  Sum_probs=29.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      .|+|+|+|..|+.+...+...|. +|.+.|.++.
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEEEECCCccchhheecccccccccccccccccc
Confidence            58899999999999999999997 7999998653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.35  E-value=0.13  Score=44.44  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +..|+|+|| |.-|...+.+|.++|++|.++.++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            457999996 99999999999999999999998754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.13  E-value=0.18  Score=37.71  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=37.2

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEE
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL  332 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~  332 (431)
                      .++.+.+.+..++.|.++++++.|+++..   +    +| +.+++++.||.||.
T Consensus        72 ~~~~~~~~~~l~~~GV~~~~~~~v~~~~~---~----~v-~~~~~~i~~D~vi~  117 (122)
T d1xhca2          72 EELSNMIKDMLEETGVKFFLNSELLEANE---E----GV-LTNSGFIEGKVKIC  117 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEECSCCEEEECS---S----EE-EETTEEEECSCEEE
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEeC---C----EE-EeCCCEEECCEEEE
Confidence            46778888888999999999999999842   2    34 35888999999885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=90.08  E-value=0.13  Score=40.85  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .|+|+|+|-.|+.++..+...|.+|.+++.++.
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            689999999999999999999999999987653

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=89.75  E-value=0.22  Score=44.74  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=38.5

Q ss_pred             CCcchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCC--C-----cEEEeCEEEECC
Q 014049          276 YGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLAS--G-----QDILSHKLVLDP  334 (431)
Q Consensus       276 gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~--G-----~~i~Ad~VI~~p  334 (431)
                      ++-......+...++..| .+|++++.|++|..+.+++.+++|+..+  +     ++++||.||++.
T Consensus       215 ~~k~s~~~~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaA  281 (367)
T d1n4wa1         215 HGKQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGA  281 (367)
T ss_dssp             SSBCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECS
T ss_pred             ccccChhHhhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEec
Confidence            343444444445566677 7999999999999874334455565432  2     358899999653

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.69  E-value=0.26  Score=36.53  Aligned_cols=35  Identities=23%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             cccEEEECCC-----------hhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGTG-----------LPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaG-----------l~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ...|+|||+|           .++..|+..|.+.|++|.++-.|+.
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            3579999999           4788999999999999999998875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.63  E-value=0.16  Score=40.19  Aligned_cols=32  Identities=25%  Similarity=0.202  Sum_probs=28.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      .|+|+|+|..|++++..+...|.+|.+.+.++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            58899999999999999999999999988754

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.55  E-value=0.14  Score=39.74  Aligned_cols=32  Identities=13%  Similarity=0.179  Sum_probs=28.2

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGa-Gl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      +|.|||| |..|.++|..|+..|.  ++.++|.+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5899995 9999999999999994  888888763

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.50  E-value=0.12  Score=44.44  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=30.5

Q ss_pred             ccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGT-GLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|.|| |+-|...+.+|.++|++|..+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999997 9999999999999999999999875

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.40  E-value=0.17  Score=39.24  Aligned_cols=32  Identities=19%  Similarity=0.116  Sum_probs=27.5

Q ss_pred             cEEEECC-ChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGT-GLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGa-Gl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      .|.|||| |..|.++|..|+..|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            5899995 9999999999999996  477888753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.27  E-value=0.43  Score=41.69  Aligned_cols=55  Identities=15%  Similarity=0.066  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHhcCc--EEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEECCC
Q 014049          280 ELPQAFCRRAAVKGC--LYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS  335 (431)
Q Consensus       280 ~l~~al~r~~~~~Gg--~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~p~  335 (431)
                      ++.+-|.+.++.++-  .|+++++|+++..++ +...+.|++.++++++||.||++.-
T Consensus        86 e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de-~~~~W~V~~~~~~~~~~~~~i~atG  142 (298)
T d1w4xa1          86 EILRYINFVADKFDLRSGITFHTTVTAAAFDE-ATNTWTVDTNHGDRIRARYLIMASG  142 (298)
T ss_dssp             HHHHHHHHHHHHTTGGGGEECSCCEEEEEEET-TTTEEEEEETTCCEEEEEEEEECCC
T ss_pred             hHHHHHHHHHHHcCCcccccCCcEEEEEEEec-CCCceeeccccccccccceEEEeec
Confidence            444445555666664  599999999999874 4455889999999999999996533

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=89.15  E-value=0.49  Score=41.69  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=37.8

Q ss_pred             CCcccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCcc
Q 014049           20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF   61 (431)
Q Consensus        20 ~~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~~   61 (431)
                      ...|||||||+|++||+||+.|+++|.+|+||||+...||.+
T Consensus         3 ~~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~S   44 (336)
T d2bs2a2           3 VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHS   44 (336)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSGG
T ss_pred             ceecCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCch
Confidence            346899999999999999999999999999999998777643

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.12  E-value=0.27  Score=36.91  Aligned_cols=37  Identities=19%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCh-----------hHHHHHHHHhhCCCcEEEEccCCC
Q 014049           20 PTAFDLIVIGTGL-----------PESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        20 ~~~~DviIIGaGl-----------~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      .+...|+|||+|.           ++..|...|.+.|++|.++-.|+.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            3446899999995           788999999999999999999875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.14  Score=42.48  Aligned_cols=40  Identities=20%  Similarity=0.224  Sum_probs=32.8

Q ss_pred             HHhcCcEEEeCcceeEEEEecCCCcEEEEEeCCCcEEEeCEEEEC
Q 014049          289 AAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD  333 (431)
Q Consensus       289 ~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~G~~i~Ad~VI~~  333 (431)
                      +++.|.+++++++|++|..+  ++   .|++++|+++.+|.+|..
T Consensus        93 ~~~~gI~~~~g~~V~~id~~--~~---~V~l~dG~~i~~d~lViA  132 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVR--DN---MVKLNDGSQITYEKCLIA  132 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGG--GT---EEEETTSCEEEEEEEEEC
T ss_pred             HHHCCeEEEeCCEEEEeecc--Cc---eeeeccceeeccceEEEe
Confidence            35688999999999999654  33   578899999999988753

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.95  E-value=0.16  Score=40.77  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      -.|+|+|+|-.|+.++..+...|. +|.+.|.++
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            369999999999999999999996 799999864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.78  E-value=0.18  Score=39.39  Aligned_cols=32  Identities=9%  Similarity=0.240  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (431)
                      ++.+||+|--|.+.|..|.++| ++|.+.+++.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            5899999999999998887777 9999998875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.68  E-value=0.24  Score=35.38  Aligned_cols=37  Identities=14%  Similarity=0.012  Sum_probs=30.2

Q ss_pred             CCCcccEEEECCChhHHHH-HHHHhhCCCcEEEEccCC
Q 014049           19 EPTAFDLIVIGTGLPESVI-SAAASASGKSVLHLDPNP   55 (431)
Q Consensus        19 ~~~~~DviIIGaGl~GL~a-A~~La~~G~~V~vlE~~~   55 (431)
                      +.....+-+||-|=+|+++ |..|.++|++|+--|.+.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            3344578888888888777 999999999999999774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.61  E-value=0.17  Score=41.42  Aligned_cols=32  Identities=31%  Similarity=0.336  Sum_probs=26.9

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      .|+|+|+|..||.++..+...|. +|.+.|.++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            78999999999999998877776 788888654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=88.47  E-value=0.33  Score=43.63  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=37.6

Q ss_pred             cCCcchHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEe--C--CC-----cEEEeCEEEECC
Q 014049          275 IYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL--A--SG-----QDILSHKLVLDP  334 (431)
Q Consensus       275 ~gG~~~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~--~--~G-----~~i~Ad~VI~~p  334 (431)
                      .++......++...+...| .+|++++.|++|..+  ++++++|..  .  .|     ++++||.||++.
T Consensus       218 ~~~k~s~~~~~L~~a~~~g~~~i~t~~~V~~I~~~--~~~~~~V~v~~~~~~~~~~~~~~~~A~~VILaA  285 (370)
T d3coxa1         218 NAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPA--TGSGYSVTMEQIDEQGNVVATKVVTADRVFFAA  285 (370)
T ss_dssp             SSSBCCGGGTHHHHHHHTTCEEEECSEEEEEEEEC--SSSSEEEEEEEECTTSCEEEEEEEEEEEEEECS
T ss_pred             cccccChHHHHHHHHHhCCCcEEEecCcEEEEEEc--CCCeEEEEEEEeCCccceeeEEEEECCEEEEee
Confidence            4555555555445555566 699999999999997  444444432  1  22     358899999653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=88.37  E-value=0.25  Score=39.18  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=30.0

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ..+|+|+|+|=++-+++..|.+.|. ++.|+-|+.
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            3579999999999999999999995 799987753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=88.15  E-value=0.22  Score=39.95  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      .|+|+|+|.-|+.++..+...|. +|.+.|.++.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            68999999999999999999997 5778888764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.93  E-value=0.24  Score=42.92  Aligned_cols=35  Identities=17%  Similarity=0.196  Sum_probs=30.4

Q ss_pred             cccEEEECC-ChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           22 AFDLIVIGT-GLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGa-Gl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      +-.|+|+|| |.-|...+..|.++|++|+++-|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            346999995 99999999999999999999987543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.85  E-value=0.27  Score=44.13  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=29.6

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|.| +|+-|...+..|.++|++|+++++..
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            4699998 89999999999999999999998653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.73  E-value=0.29  Score=38.08  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      ..|.|||+|..|.++|..|.+.+. ++.++|.++
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            479999999999999999999885 688889755

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.48  E-value=0.24  Score=38.17  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      +|.|||+|..|.++|..|+.+|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            68999999999999999999985  588898653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.32  E-value=0.25  Score=41.02  Aligned_cols=35  Identities=20%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...+|+|||+|-+|.-+|..|++++.++.++=+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            45789999999999999999999999988876553

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.29  E-value=0.26  Score=38.86  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ..|+|||.|--|-..|..|+..|.+|+|.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            579999999999999999999999999999975

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.24  E-value=0.4  Score=41.70  Aligned_cols=32  Identities=9%  Similarity=-0.005  Sum_probs=26.1

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      -++|.| +|=-|.+.|..|+++|++|.+.+++.
T Consensus        27 ~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          27 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            345555 56678999999999999999999864

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.00  E-value=0.35  Score=39.22  Aligned_cols=34  Identities=18%  Similarity=0.140  Sum_probs=30.3

Q ss_pred             cccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|+|.| +|-.|..+|..|++.|.+|+++.++.
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            45688888 68999999999999999999999885

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.76  E-value=0.37  Score=40.62  Aligned_cols=49  Identities=16%  Similarity=0.162  Sum_probs=38.8

Q ss_pred             CCCCCCCcccEEEECCCh-hHHHHHHHHhhCCCcEEEEccCCCCCCcccccC
Q 014049           15 YPPIEPTAFDLIVIGTGL-PESVISAAASASGKSVLHLDPNPFYGSHFSSLS   65 (431)
Q Consensus        15 ~~~~~~~~~DviIIGaGl-~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   65 (431)
                      .|||+.+  -++|.||+= -|.+.|..|+++|++|.+.+++...+.....+.
T Consensus         2 ~psl~gK--~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~   51 (237)
T d1uzma1           2 KPPFVSR--SVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVE   51 (237)
T ss_dssp             CCCCCCC--EEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEE
T ss_pred             CCCCCCC--EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEE
Confidence            5677654  477777764 789999999999999999999988777666554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.58  E-value=0.46  Score=42.02  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=37.9

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCCCcEEEEEeCC---Cc---EEEeCEEEE-CCCC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS---GQ---DILSHKLVL-DPSF  336 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~~~---G~---~i~Ad~VI~-~p~~  336 (431)
                      .++.+-|...+..++..|++|+.|++|..+  +++ +.|++.+   ++   +..||.||+ +..+
T Consensus       113 ~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~--~~~-w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         113 HTIQEYQRIYAQPLLPFIKLATDVLDIEKK--DGS-WVVTYKGTKAGSPISKDIFDAVSICNGHY  174 (335)
T ss_dssp             HHHHHHHHHHHGGGGGGEECSEEEEEEEEE--TTE-EEEEEEESSTTCCEEEEEESEEEECCCSS
T ss_pred             HHHHHHHHHHHHHhhhcccCceEEEEEEec--CCE-EEEEEEecCCCCeEEEEEeeEEEEccccc
Confidence            355566666666788899999999999987  665 3454433   22   356999994 4544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.23  E-value=0.31  Score=37.43  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=28.2

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC--cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK--SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~--~V~vlE~~~   55 (431)
                      +|.|||+|--|.++|..|+.+|.  ++.++|.++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            68999999999999999999885  688998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.07  E-value=0.34  Score=38.56  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             EEEECCChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049           25 LIVIGTGLPESVISAAASASG-KSVLHLDPNP   55 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G-~~V~vlE~~~   55 (431)
                      |+|+|+|-.|++++..+++.| .+|.+.+.++
T Consensus        32 VlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          32 CAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            899999999999999999998 5888888775

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.32  E-value=0.32  Score=38.82  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           24 DLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        24 DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      .|+|+|+|-.|+.++..+...|. +|.+.|.++
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            58999999999999999999996 688888864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.83  E-value=0.44  Score=37.81  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=27.3

Q ss_pred             EEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           25 LIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        25 viIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      |+|+|+|..|+.++..+++.|- +|.+.++++.
T Consensus        32 VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          32 CAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            7889999999999999988876 6888888753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.60  E-value=0.31  Score=38.72  Aligned_cols=33  Identities=15%  Similarity=0.179  Sum_probs=27.8

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCC-cEEEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~   55 (431)
                      -.|+|+|+|..|+.++..+...|. .|.+.++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            358999999999999998887774 678888876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.97  E-value=0.38  Score=38.26  Aligned_cols=33  Identities=21%  Similarity=0.240  Sum_probs=26.9

Q ss_pred             ccEEEECCChhHHHHHHHHhhCCCcE-EEEccCC
Q 014049           23 FDLIVIGTGLPESVISAAASASGKSV-LHLDPNP   55 (431)
Q Consensus        23 ~DviIIGaGl~GL~aA~~La~~G~~V-~vlE~~~   55 (431)
                      -.|+|+|+|..|+.++..+...|.++ .+.+.++
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            36999999999999999998889875 4556544

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.75  E-value=0.71  Score=38.10  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=27.2

Q ss_pred             cccEEEECCChhHHHHHHHHh--------------------hCC-CcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAAS--------------------ASG-KSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La--------------------~~G-~~V~vlE~~~   55 (431)
                      ..+|+|||+|-..+=+|..|.                    +.| .+|.++-|+.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            468999999999999999887                    455 4577777664

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.60  E-value=2.3  Score=31.28  Aligned_cols=55  Identities=7%  Similarity=0.062  Sum_probs=37.8

Q ss_pred             chHHHHHHHHHHhcCcEEEeCcceeEEEEecCC-CcEEEEEeCC---Cc--EEEeCEEEEC
Q 014049          279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS-GSYKGVRLAS---GQ--DILSHKLVLD  333 (431)
Q Consensus       279 ~~l~~al~r~~~~~Gg~i~l~~~V~~I~~~~~~-g~~~gV~~~~---G~--~i~Ad~VI~~  333 (431)
                      .++++.+.+..++.|.+|++++.|+++...+++ .....|++.+   ++  ++.+|.|+++
T Consensus        60 ~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~A  120 (122)
T d1h6va2          60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLA  120 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEE
Confidence            468899999999999999999999999764211 1123343332   22  3468998853

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.60  E-value=0.5  Score=37.72  Aligned_cols=32  Identities=6%  Similarity=0.252  Sum_probs=28.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN   54 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~   54 (431)
                      ...|+|||+|=++-++++.|++.| +|.|+-|+
T Consensus        18 ~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          18 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            357999999999999999999888 89888774

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=83.41  E-value=1.3  Score=39.51  Aligned_cols=52  Identities=10%  Similarity=0.186  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHhcC-cEEEeCcceeEEEEecCCCcEEEEEeCC-----Cc--EEEeCE-EEEC
Q 014049          280 ELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLAS-----GQ--DILSHK-LVLD  333 (431)
Q Consensus       280 ~l~~al~r~~~~~G-g~i~l~~~V~~I~~~~~~g~~~gV~~~~-----G~--~i~Ad~-VI~~  333 (431)
                      .-..++.+.+...+ -+|++++.|++|..+  +++++||++.+     ++  ++.|++ ||++
T Consensus       191 s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d--~~ra~GV~~~~~~~~~~~~~~v~a~~eVILs  251 (360)
T d1kdga1         191 GPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILS  251 (360)
T ss_dssp             HHHHTHHHHHHTCTTEEEECSCCEEEEEEE--TTEEEEEEESCTTSSGGGEEEEEEEEEEEEC
T ss_pred             cccchhhhhhhcccccccccCcEEEEEEEe--CCEEEEEEEEecccCcceEEEEEECCEEEEe
Confidence            45555555555555 599999999999998  88999999854     22  355555 7743

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=83.40  E-value=0.57  Score=35.94  Aligned_cols=31  Identities=16%  Similarity=0.221  Sum_probs=26.9

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCCC--cEEEEccC
Q 014049           24 DLIVIG-TGLPESVISAAASASGK--SVLHLDPN   54 (431)
Q Consensus        24 DviIIG-aGl~GL~aA~~La~~G~--~V~vlE~~   54 (431)
                      .|.||| +|..|.++|..|..+|.  ++.++|-+
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            589999 69999999999999987  57888753

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=0.57  Score=41.08  Aligned_cols=51  Identities=16%  Similarity=0.245  Sum_probs=37.4

Q ss_pred             hHHHHHHHHH-HhcCcEEEeCcceeEEEEecCCCcEEEEEe---CCCcE--EEeCEEEE
Q 014049          280 ELPQAFCRRA-AVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQD--ILSHKLVL  332 (431)
Q Consensus       280 ~l~~al~r~~-~~~Gg~i~l~~~V~~I~~~~~~g~~~gV~~---~~G~~--i~Ad~VI~  332 (431)
                      ++...+.+.+ +..|.+|+.+++|.++..+  +|+++||..   .+|+.  +.|+.||+
T Consensus       135 ~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d--~g~v~Gvv~~~~~~g~~~~~~AkaVIL  191 (311)
T d1kf6a2         135 HMLHTLFQTSLQFPQIQRFDEHFVLDILVD--DGHVRGLVAMNMMEGTLVQIRANAVVM  191 (311)
T ss_dssp             HHHHHHHHHHTTCTTEEEEETEEEEEEEEE--TTEEEEEEEEETTTTEEEEEECSCEEE
T ss_pred             HHHHhHHHHHHccCcceeEeeeEeeeeEec--CCcceeEEEEEcCCCcEEEEECCEEEE
Confidence            4555444444 4457899999999999998  889888753   45754  58998885

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.23  E-value=0.37  Score=38.05  Aligned_cols=32  Identities=22%  Similarity=0.341  Sum_probs=27.7

Q ss_pred             cEEEEC-CChhHHHHHHHHhhCC-CcEEEEccCC
Q 014049           24 DLIVIG-TGLPESVISAAASASG-KSVLHLDPNP   55 (431)
Q Consensus        24 DviIIG-aGl~GL~aA~~La~~G-~~V~vlE~~~   55 (431)
                      .|+|+| +|..|+.++..+...| .+|.+.+.++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccch
Confidence            599999 5999999998888888 5899999874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=83.11  E-value=0.52  Score=37.43  Aligned_cols=34  Identities=6%  Similarity=0.133  Sum_probs=30.4

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP   55 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~   55 (431)
                      ...|+|+|+|=++-+++..|.+.+.+|.|+-|+.
T Consensus        18 ~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          18 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            4579999999999999999999999999997763

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.10  E-value=0.66  Score=38.58  Aligned_cols=35  Identities=11%  Similarity=0.077  Sum_probs=29.6

Q ss_pred             cccEEEECCChhHHHHHHHHhhC--------------------C-CcEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASAS--------------------G-KSVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~--------------------G-~~V~vlE~~~~   56 (431)
                      ..+|||||+|-.++=+|..|.|.                    | .+|.++-++..
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            46899999999999999999984                    5 57888887754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.88  E-value=0.56  Score=36.13  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=25.8

Q ss_pred             cEEEEC-CChhHHHHHHHHhh-C--CCcEEEEccCC
Q 014049           24 DLIVIG-TGLPESVISAAASA-S--GKSVLHLDPNP   55 (431)
Q Consensus        24 DviIIG-aGl~GL~aA~~La~-~--G~~V~vlE~~~   55 (431)
                      +|.||| ||..|.++|..|+. .  +.++.++|.++
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            689999 69999999998864 3  46899998643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.69  E-value=0.58  Score=41.48  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=30.5

Q ss_pred             ccEEEEC-CChhHHHHHHHHhhCCCcEEEEccCCC
Q 014049           23 FDLIVIG-TGLPESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        23 ~DviIIG-aGl~GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      ..|+|.| +|+-|...+..|.++|++|..++++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4789999 799999999999999999999998643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=82.57  E-value=0.52  Score=42.17  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=27.0

Q ss_pred             EEEEC-CChhHHHHHHHHhhCCCcEEEEccCCCC
Q 014049           25 LIVIG-TGLPESVISAAASASGKSVLHLDPNPFY   57 (431)
Q Consensus        25 viIIG-aGl~GL~aA~~La~~G~~V~vlE~~~~~   57 (431)
                      |+|.| +|+-|..++.+|.++|++|.+++++...
T Consensus         4 vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~   37 (357)
T d1db3a_           4 ALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASS   37 (357)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcc
Confidence            55888 8999999999999999999999997543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=82.36  E-value=0.5  Score=40.02  Aligned_cols=33  Identities=21%  Similarity=0.232  Sum_probs=26.2

Q ss_pred             cEEEECCC--hh-HHHHHHHHhhCCCcEEEEccCCC
Q 014049           24 DLIVIGTG--LP-ESVISAAASASGKSVLHLDPNPF   56 (431)
Q Consensus        24 DviIIGaG--l~-GL~aA~~La~~G~~V~vlE~~~~   56 (431)
                      -|+|.||+  ++ |.+.|..|+++|.+|.+..+++.
T Consensus         7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            46777753  23 67899999999999999998864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=81.93  E-value=0.94  Score=36.14  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCC-cEEEEccCCC
Q 014049           22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF   56 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~~~   56 (431)
                      ...|+|||+|=++-++++.|.+.|. ++.|+.|+..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4689999999999999999999996 6888888754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=81.64  E-value=0.75  Score=35.96  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=29.7

Q ss_pred             CcccEEEECCChhHHHHHHHHhhCCC-cEEEEccC
Q 014049           21 TAFDLIVIGTGLPESVISAAASASGK-SVLHLDPN   54 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~~G~-~V~vlE~~   54 (431)
                      ....|+|||+|-.|-..|..|...|. +++|.=|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            34679999999999999999999997 58888765

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.51  E-value=0.36  Score=36.29  Aligned_cols=37  Identities=16%  Similarity=0.194  Sum_probs=27.4

Q ss_pred             CcccEEEECCChhHHHHHHHHhh-CCCc-EEEEccCCCC
Q 014049           21 TAFDLIVIGTGLPESVISAAASA-SGKS-VLHLDPNPFY   57 (431)
Q Consensus        21 ~~~DviIIGaGl~GL~aA~~La~-~G~~-V~vlE~~~~~   57 (431)
                      .+|.|+|+|||-.|-+.+.+|.+ .|++ |..+|-+...
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            46899999999999988877753 4666 4566655543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.12  E-value=2.9  Score=33.11  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=34.3

Q ss_pred             cccEEEECCChhHHHHHHHHhhCCCcEEEEccCCCCCCc
Q 014049           22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH   60 (431)
Q Consensus        22 ~~DviIIGaGl~GL~aA~~La~~G~~V~vlE~~~~~GG~   60 (431)
                      ...|.|||.|-.|-..|..|..-|.+|.++++...-+..
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~   80 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW   80 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             CceEEEeccccccccceeeeeccccccccccccccccce
Confidence            356999999999999999999999999999988765543