Citrus Sinensis ID: 014053

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-

MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE

ccccccccccccccccccccccEEEEcccEEEEEccccEEEEEcccEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

cccccccHHHHHHcccccccccHEcccccEEEEEHHHEEEEEEHHHHEccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

mrrtglpardlrildpllsypstvlGRERAIVINLEHIKAIITAQEVLLmnsrdpsvvpFVEELQSRILCHYQatksqeingedsnwtnlydleapqsrtsspqnfsggfpqfedeneerkedgkqslenrdgskvlpfEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLEnsstssinerddmddEVLQSNMNNRTTAEISLeatggstsyeadfqntenihdnlftqnihsrashgtrtstthsaiskHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLwtvgggatGSIFLYVVAIAWCKHKRLLE

mrrtglpardlrildpllsypstvLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKsqeingedsnWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGkqslenrdgskvLPFEFVALEACLEAACSCLENEAKTLEqeahpaldkltskistlnlervrqiksrlvaitgrvqkvRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHsrashgtrtstthSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE

MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFValeacleaacscleneaKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRdelehlldddedMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE

*********DLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATK**********WTNLY********************************************VLPFEFVALEACLEAACSCLENEAKT********LDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHL***************************************************************************LF*********************SKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHK****

***TGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEE************************************************************************VLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQ***************************************************************VEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE

MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAP********NFSGGFPQF***************ENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQ*********NERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHS*************AISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE

***TGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRIL*****************************************************************KVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQL********************************************************************************HLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLL*

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MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALxxxxxxxxxxxxxxxxxxxxxAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		431	2.2.26 [Sep-21-2011]
Q9LJN2		484	Magnesium transporter MRS	yes	no	0.967	0.861	0.696	1e-165
Q8L4S2		444	Magnesium transporter MRS	yes	no	0.877	0.851	0.526	1e-112
A2WY50		444	Magnesium transporter MRS	N/A	no	0.877	0.851	0.526	1e-112
Q9SAH0		443	Magnesium transporter MRS	no	no	0.856	0.832	0.453	2e-86
Q9S9N4		442	Magnesium transporter MRS	no	no	0.849	0.828	0.451	1e-85
Q7XQQ1		434	Putative magnesium transp	no	no	0.837	0.831	0.456	2e-85
Q01JR9		434	Putative magnesium transp	N/A	no	0.837	0.831	0.453	2e-85
Q8S1N1		418	Magnesium transporter MRS	no	no	0.846	0.873	0.430	7e-80
A2WXD3		418	Magnesium transporter MRS	N/A	no	0.846	0.873	0.430	7e-80
Q0JBZ6		428	Magnesium transporter MRS	no	no	0.807	0.813	0.416	1e-76

>sp\|Q9LJN2\|MRS23_ARATH Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=1 SV=1	Back alignment and function desciption

 Score =  582 bits (1499), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/432 (69%), Positives = 339/432 (78%), Gaps = 15/432 (3%)

Query: 1   MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPF 60
           MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLL+NS+DPSV PF
Sbjct: 67  MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLLNSKDPSVSPF 126

Query: 61  VEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEER 120
           ++ELQ RILCH+ ATK QE                P +R    Q  +G      D+  E 
Sbjct: 127 IDELQRRILCHHHATKPQEEQNSGGE---------PHTRVDPAQGEAGTEQSSGDQGSEA 177

Query: 121 KEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTL 180
           K+D KQSLEN+DGSKVLPFEFVALEACLEAA S LE+EA  LE EAHPALDKLTSKISTL
Sbjct: 178 KKDAKQSLENQDGSKVLPFEFVALEACLEAASSSLEHEALRLELEAHPALDKLTSKISTL 237

Query: 181 NLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINER 240
           NLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKL Q+LE+SS SS+NE 
Sbjct: 238 NLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLAQKLEDSSNSSMNES 297

Query: 241 DDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLF-TQNIHSRASHGTR 299
           D  + ++ Q + ++R   E + EA     + +  +    + H+ L  TQ+  SR S GT 
Sbjct: 298 DTFEVDLPQGDEDDRLPPEFASEA-----NRDGRYLQANDAHELLMSTQSALSRNSRGTH 352

Query: 300 TSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL 359
           TS+T SA++  LDVEELEMLLEAYFVQIDG LNKLSTLREYVDDTEDYINIMLDDKQNHL
Sbjct: 353 TSSTRSAMTNKLDVEELEMLLEAYFVQIDGILNKLSTLREYVDDTEDYINIMLDDKQNHL 412

Query: 360 LQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVV 419
           LQMGVMLTTATLV+SAF+ VAG+FGMNI IELF ++K G   F+WTV GG+ GSI LYV 
Sbjct: 413 LQMGVMLTTATLVMSAFIAVAGVFGMNITIELFTDNKHGPSRFIWTVIGGSIGSICLYVG 472

Query: 420 AIAWCKHKRLLE 431
           AI WCK+KRLLE
Sbjct: 473 AIGWCKYKRLLE 484

Magnesium transporter that may mediate the influx of magnesium.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8L4S2\|MRS2F_ORYSJ Magnesium transporter MRS2-F OS=Oryza sativa subsp. japonica GN=MRS2-F PE=1 SV=1	Back alignment and function description

>sp\|A2WY50\|MRS2F_ORYSI Magnesium transporter MRS2-F OS=Oryza sativa subsp. indica GN=MRS2-F PE=3 SV=1	Back alignment and function description

>sp\|Q9SAH0\|MRS2A_ARATH Magnesium transporter MRS2-10 OS=Arabidopsis thaliana GN=MRS2-10 PE=2 SV=1	Back alignment and function description

>sp\|Q9S9N4\|MRS21_ARATH Magnesium transporter MRS2-1 OS=Arabidopsis thaliana GN=MRS2-1 PE=2 SV=1	Back alignment and function description

>sp\|Q7XQQ1\|MRS2D_ORYSJ Putative magnesium transporter MRS2-D OS=Oryza sativa subsp. japonica GN=MRS2-D PE=3 SV=1	Back alignment and function description

>sp\|Q01JR9\|MRS2D_ORYSI Putative magnesium transporter MRS2-D OS=Oryza sativa subsp. indica GN=MRS2-D PE=3 SV=1	Back alignment and function description

>sp\|Q8S1N1\|MRS2E_ORYSJ Magnesium transporter MRS2-E OS=Oryza sativa subsp. japonica GN=MRS2-E PE=2 SV=1	Back alignment and function description

>sp\|A2WXD3\|MRS2E_ORYSI Magnesium transporter MRS2-E OS=Oryza sativa subsp. indica GN=MRS2-E PE=3 SV=1	Back alignment and function description

>sp\|Q0JBZ6\|MRS2C_ORYSJ Magnesium transporter MRS2-C OS=Oryza sativa subsp. japonica GN=MRS2-C PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		431
296083021		435	unnamed protein product [Vitis vinifera]	1.0	0.990	0.811	0.0
225429039		502	PREDICTED: magnesium transporter MRS2-3-	1.0	0.858	0.811	0.0
449438313		494	PREDICTED: magnesium transporter MRS2-3-	0.986	0.860	0.792	0.0
225429041		463	PREDICTED: magnesium transporter MRS2-3-	0.911	0.848	0.771	0.0
255562268		456	RNA splicing protein mrs2, mitochondrial	0.909	0.859	0.75	0.0
255562270		451	RNA splicing protein mrs2, mitochondrial	0.897	0.858	0.747	1e-178
224105741		462	magnesium transporter [Populus trichocar	0.988	0.922	0.764	1e-178
30685422		484	magnesium transporter MRS2-3 [Arabidopsi	0.967	0.861	0.696	1e-163
297830626		484	hypothetical protein ARALYDRAFT_479481 [	0.969	0.863	0.703	1e-163
357480695		444	Magnesium transporter [Medicago truncatu	0.895	0.869	0.698	1e-158

>gi\|296083021\|emb\|CBI22425.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/435 (81%), Positives = 387/435 (88%), Gaps = 4/435 (0%)

Query: 1   MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPF 60
           MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIIT QEVLL+NS+DPSV PF
Sbjct: 1   MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITCQEVLLLNSKDPSVTPF 60

Query: 61  VEELQSRILCHYQATKSQE--INGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENE 118
           VEELQ R+L  + ATKS E  ++  +++WTNLYDL  PQSR  SPQNFSG F QF+D++E
Sbjct: 61  VEELQRRLLRLHHATKSHEGGMHATNTDWTNLYDLGEPQSRVVSPQNFSGDFSQFQDQDE 120

Query: 119 ERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKIS 178
             K DG+  LEN+DG KVLPFEF+ALEACLEAACSCLENEA+TLEQEAHPALDKLTSKIS
Sbjct: 121 GAKADGRPGLENQDGLKVLPFEFIALEACLEAACSCLENEARTLEQEAHPALDKLTSKIS 180

Query: 179 TLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQ-LENSSTSSI 237
           TLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLT+K++QQ LENSS SSI
Sbjct: 181 TLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTDKMIQQHLENSSVSSI 240

Query: 238 NERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLF-TQNIHSRASH 296
           +ERD MDD VL ++M++    EISLEA G S +YE D QN +N  ++LF T +   R SH
Sbjct: 241 HERDGMDDGVLHADMDDGIPDEISLEANGVSATYEGDLQNIDNPQEHLFGTPHALGRDSH 300

Query: 297 GTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ 356
           GT TSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ
Sbjct: 301 GTHTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ 360

Query: 357 NHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFL 416
           NHLLQMGVMLTTATLVVSAFVVVAGIFGMNI+IELFD+ KSG+QEFLWTVGGGATGSIFL
Sbjct: 361 NHLLQMGVMLTTATLVVSAFVVVAGIFGMNIHIELFDDKKSGVQEFLWTVGGGATGSIFL 420

Query: 417 YVVAIAWCKHKRLLE 431
           YV+AIAWC+HKRLLE
Sbjct: 421 YVIAIAWCRHKRLLE 435

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225429039\|ref\|XP_002268333.1\| PREDICTED: magnesium transporter MRS2-3-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449438313\|ref\|XP_004136933.1\| PREDICTED: magnesium transporter MRS2-3-like [Cucumis sativus] gi\|449495702\|ref\|XP_004159919.1\| PREDICTED: magnesium transporter MRS2-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|225429041\|ref\|XP_002268374.1\| PREDICTED: magnesium transporter MRS2-3-like isoform 3 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255562268\|ref\|XP_002522142.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi\|223538741\|gb\|EEF40342.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255562270\|ref\|XP_002522143.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis] gi\|223538742\|gb\|EEF40343.1\| RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224105741\|ref\|XP_002313918.1\| magnesium transporter [Populus trichocarpa] gi\|222850326\|gb\|EEE87873.1\| magnesium transporter [Populus trichocarpa]	Back alignment and taxonomy information

>gi|30685422|ref|NP_188598.2| magnesium transporter MRS2-3 [Arabidopsis thaliana] gi|75273604|sp|Q9LJN2.1|MRS23_ARATH RecName: Full=Magnesium transporter MRS2-3; AltName: Full=Magnesium Transporter 4; Short=AtMGT4 gi|9294429|dbj|BAB02549.1| unnamed protein product [Arabidopsis thaliana] gi|23306416|gb|AAN17435.1| unknown protein [Arabidopsis thaliana] gi|25360820|gb|AAN73213.1| MRS2-3 [Arabidopsis thaliana] gi|30387601|gb|AAP31966.1| At3g19640 [Arabidopsis thaliana] gi|332642749|gb|AEE76270.1| magnesium transporter MRS2-3 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297830626\|ref\|XP_002883195.1\| hypothetical protein ARALYDRAFT_479481 [Arabidopsis lyrata subsp. lyrata] gi\|297329035\|gb\|EFH59454.1\| hypothetical protein ARALYDRAFT_479481 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357480695\|ref\|XP_003610633.1\| Magnesium transporter [Medicago truncatula] gi\|355511968\|gb\|AES93591.1\| Magnesium transporter [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		431
TAIR\|locus:2091176		484	MGT4 "magnesium transporter 4"	0.967	0.861	0.638	1.3e-130
TAIR\|locus:2044254		421	MGT3 "magnesium transporter 3"	0.294	0.301	0.451	2.3e-56
TAIR\|locus:2174799		394	MGT9 "magnesium transporter 9"	0.327	0.357	0.463	3.7e-50
TAIR\|locus:2025767		443	MGT1 "magnesium transporter 1"	0.294	0.286	0.511	1.9e-49
TAIR\|locus:2200542		442	MGT2 "magnesium transporter 2"	0.262	0.255	0.528	1.6e-48
TAIR\|locus:2077665		436	MGT6 "magnesium transporter 6"	0.438	0.433	0.360	9.7e-46
TAIR\|locus:2139905		408	MGT5 "AT4G28580" [Arabidopsis	0.343	0.362	0.324	1.6e-25
TAIR\|locus:2144746		294	AT5G09720 [Arabidopsis thalian	0.190	0.278	0.566	3.6e-24
POMBASE\|SPBC25H2.08c		422	mrs2 "magnesium ion transporte	0.241	0.246	0.336	1.3e-13
DICTYBASE\|DDB_G0275813		747	DDB_G0275813 "Magnesium transp	0.187	0.108	0.365	5.5e-12

TAIR\|locus:2091176 MGT4 "magnesium transporter 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
 Identities = 276/432 (63%), Positives = 312/432 (72%)

Query:     1 MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPF 60
             MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLL+NS+DPSV PF
Sbjct:    67 MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLLNSKDPSVSPF 126

Query:    61 VEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEER 120
             ++ELQ RILCH+ ATK QE                P +R    Q  +G      D+  E 
Sbjct:   127 IDELQRRILCHHHATKPQEEQNSGGE---------PHTRVDPAQGEAGTEQSSGDQGSEA 177

Query:   121 KEDGKQSLENRDGSKVLPFEFVXXXXXXXXXXXXXXXXXKTLEQEAHPALDKLTSKISTL 180
             K+D KQSLEN+DGSKVLPFEFV                   LE EAHPALDKLTSKISTL
Sbjct:   178 KKDAKQSLENQDGSKVLPFEFVALEACLEAASSSLEHEALRLELEAHPALDKLTSKISTL 237

Query:   181 NLERVRQIKSRLVAITGRVQKVRXXXXXXXXXXXXMAEMYLTEKLMQQLENSSTSSINER 240
             NLERVRQIKSRLVAITGRVQKVR            MAEMYLTEKL Q+LE+SS SS+NE 
Sbjct:   238 NLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLAQKLEDSSNSSMNES 297

Query:   241 DDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLF-TQNIHSRASHGTR 299
             D  + ++ Q + ++R   E + EA       +A+     + H+ L  TQ+  SR S GT 
Sbjct:   298 DTFEVDLPQGDEDDRLPPEFASEANRDGRYLQAN-----DAHELLMSTQSALSRNSRGTH 352

Query:   300 TSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL 359
             TS+T SA++  LDVEELEMLLEAYFVQIDG LNKLSTLREYVDDTEDYINIMLDDKQNHL
Sbjct:   353 TSSTRSAMTNKLDVEELEMLLEAYFVQIDGILNKLSTLREYVDDTEDYINIMLDDKQNHL 412

Query:   360 LQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVV 419
             LQMGVMLTTATLV+SAF+ VAG+FGMNI IELF ++K G   F+WTV GG+ GSI LYV 
Sbjct:   413 LQMGVMLTTATLVMSAFIAVAGVFGMNITIELFTDNKHGPSRFIWTVIGGSIGSICLYVG 472

Query:   420 AIAWCKHKRLLE 431
             AI WCK+KRLLE
Sbjct:   473 AIGWCKYKRLLE 484

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0030001 "metal ion transport" evidence=IEA;ISS

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015095 "magnesium ion transmembrane transporter activity" evidence=IDA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR\|locus:2044254 MGT3 "magnesium transporter 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2174799 MGT9 "magnesium transporter 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025767 MGT1 "magnesium transporter 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2200542 MGT2 "magnesium transporter 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077665 MGT6 "magnesium transporter 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2139905 MGT5 "AT4G28580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144746 AT5G09720 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

POMBASE\|SPBC25H2.08c mrs2 "magnesium ion transporter Mrs2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0275813 DDB_G0275813 "Magnesium transporter MRS2, mitochondrial" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2WY50	MRS2F_ORYSI	No assigned EC number	0.5267	0.8770	0.8513	N/A	no
Q9LJN2	MRS23_ARATH	No assigned EC number	0.6967	0.9675	0.8615	yes	no
Q8L4S2	MRS2F_ORYSJ	No assigned EC number	0.5267	0.8770	0.8513	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.IX.2600.1	magnesium transporter (462 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		431
cd12823		323	cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae	4e-90
pfam01544		291	pfam01544, CorA, CorA-like Mg2+ transporter protei	5e-04

>gnl\|CDD\|213357 cd12823, Mrs2_Mfm1p-like, Saccharomyces cerevisiae inner mitochondrial membrane Mg2+ transporters Mfm1p and Mrs2p-like family	Back alignment and domain information

 Score =  275 bits (706), Expect = 4e-90
 Identities = 148/433 (34%), Positives = 198/433 (45%), Gaps = 134/433 (30%)

Query: 1   MRRTGLPARDLRILDP-LLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPS--- 56
           +R  GL  RDLR+LDP L SYP ++L RE AI++NLEHI+AIITA EVLL +    S   
Sbjct: 21  LRELGLQPRDLRLLDPTLTSYPPSILVRENAILVNLEHIRAIITADEVLLFDPDGSSSAL 80

Query: 57  VVPFVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDE 116
           V  F+EELQ R                                  +  N S         
Sbjct: 81  VSAFLEELQRR---------------------------------LASSNGSES------- 100

Query: 117 NEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSK 176
                           G   LPFEF ALEA LE  CS LE E K LE EA P LD+LT K
Sbjct: 101 -------------ESGGEDSLPFEFRALEAALEEVCSHLEAELKRLEPEALPLLDELTDK 147

Query: 177 ISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSS 236
           IST NLER+  +K RLV +  RVQKVRD LE LLDDDEDMA+MYLT+K        S+  
Sbjct: 148 ISTSNLERLLPLKRRLVELETRVQKVRDALEELLDDDEDMADMYLTDKAAGPERLESSRK 207

Query: 237 INERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASH 296
            ++ +++               E+ LEA      Y    Q  + + + L           
Sbjct: 208 EDDHEEV---------------EMLLEA------Y---LQQVDELLNKL----------- 232

Query: 297 GTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQ 356
                                                   LREY+DDTE+ IN++LD ++
Sbjct: 233 --------------------------------------EELREYIDDTEELINLILDSRR 254

Query: 357 NHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFL 416
           N L+++ + L+  TL ++   +VAG+FGMN+   L +   +    F    GG   GSI +
Sbjct: 255 NQLMRLELKLSIGTLSLAVGTLVAGLFGMNLPSGLEESPYA----FWIVTGGSVVGSILI 310

Query: 417 YVVAIAWCKHKRL 429
           ++V + + + KRL
Sbjct: 311 FIVVLRYLRRKRL 323

A eukaryotic subfamily belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This functionally diverse subfamily includes the inner mitochondrial membrane Mg2+ transporters Saccharomyces cerevisiae Mfm1p/Lpe10p, Mrs2p, and human MRS2/ MRS2L. It also includes a family of Arabidopsis thaliana proteins (AtMGTs) some of which are localized to distinct tissues, and not all of which can transport Mg2+. Structures of the intracellular domain of two EcCorA_ZntB-like family transporters: Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, as in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 323

>gnl\|CDD\|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		431
KOG2662		414	consensus Magnesium transporters: CorA family [Ino	100.0
COG0598		322	CorA Mg2+ and Co2+ transporters [Inorganic ion tra	99.94
TIGR00383		318	corA magnesium Mg(2+) and cobalt Co(2+) transport	99.94
PRK09546		324	zntB zinc transporter; Reviewed	99.93
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	99.9
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	99.89
PRK11085		316	magnesium/nickel/cobalt transporter CorA; Provisio	93.84
PF07332		121	DUF1469: Protein of unknown function (DUF1469); In	90.42
PF01544		292	CorA: CorA-like Mg2+ transporter protein; InterPro	88.78
PF10267		395	Tmemb_cc2: Predicted transmembrane and coiled-coil	87.26
PF02656		73	DUF202: Domain of unknown function (DUF202); Inter	81.99

>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]	Back alignment and domain information

Probab=100.00  E-value=3.7e-81  Score=625.40  Aligned_cols=325  Identities=57%  Similarity=0.811  Sum_probs=283.5

Q ss_pred             CccCCCCCCcccccCCCCCCCceeeecCCeEEeecccceeeeecCeEEEecCCCCCchhHHHHHHHHhhccccccccccc
Q 014053            1 MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEI   80 (431)
Q Consensus         1 ~r~~gL~~RDLR~lDp~~s~pssIlvR~~aIlvnle~IraII~~d~vllf~~~~~~~~~f~~~L~~rL~~~~~~~~~~~~   80 (431)
                      |+|.||+|||||++||+++||++|+.|++|||+||||||||||+|+|++||+.++ |.++.+++++|+.........|  
T Consensus        87 ~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q--  163 (414)
T KOG2662|consen   87 MKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQ--  163 (414)
T ss_pred             HHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhcccccccccc--
Confidence            6899999999999999999999999999999999999999999999999999999 9999999999998643321100  


Q ss_pred             cCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 014053           81 NGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAK  160 (431)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~Le~e~~  160 (431)
                                                 .+.                   +....+.+||||||||+||+.+|++|++++.
T Consensus       164 ---------------------------~s~-------------------~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~  197 (414)
T KOG2662|consen  164 ---------------------------LSS-------------------DGGSKDELPFEFRALEVALEAACSFLDSRLS  197 (414)
T ss_pred             ---------------------------cCC-------------------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence                                       000                   1122578999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCCCCCCC
Q 014053          161 TLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINER  240 (431)
Q Consensus       161 ~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~~~~~~  240 (431)
                      +||..++++||+|++++++.+|++||.+|++|++|.+||++||++|+++||||+||++||||+|+.+..+          
T Consensus       198 ~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~----------  267 (414)
T KOG2662|consen  198 ELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS----------  267 (414)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999865431          


Q ss_pred             CccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcc--cccccccCCCccHHHHHH
Q 014053          241 DDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRT--STTHSAISKHLDVEELEM  318 (431)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~d~~e~E~  318 (431)
                                                                 .+|++++++..+...+.  ....+-.+...|+||+||
T Consensus       268 -------------------------------------------~~~~~~sp~~~~~~~r~~~~~~~s~~~~~dd~eElEM  304 (414)
T KOG2662|consen  268 -------------------------------------------PESAPTSPTIKAGISRAKSNRASSTVRGEDDVEELEM  304 (414)
T ss_pred             -------------------------------------------cccCCCCccccCCccchhhcccchhccccccHHHHHH
Confidence                                                       12233333333222110  000011133789999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccC
Q 014053          319 LLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSG  398 (431)
Q Consensus       319 LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~  398 (431)
                      |||+||+|+|.+.+++++++++|++|||+||++||++||++|+++|+||++|++++++++|+|+||||+++.+|+    +
T Consensus       305 LLEaYf~qiD~~~nk~~~Lre~IddTEd~InI~LDs~RN~LiqleL~Lt~gT~~~s~~~~va~ifGMNl~~~l~~----~  380 (414)
T KOG2662|consen  305 LLEAYFMQIDSTLNKLESLREYIDDTEDIINIQLDSNRNELIQLELLLTIGTFCLSVFSVVAGIFGMNLPSSLEE----D  380 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhcc----C
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875    6


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Q 014053          399 MQEFLWTVGGGATGSIFLYVVAIAWCKHKRLLE  431 (431)
Q Consensus       399 ~~~F~~v~~~~~~~~v~i~~~~~~y~krk~wl~  431 (431)
                      ++.|+|++++++++|+++|++.++|+|+||+++
T Consensus       381 ~~~F~~vv~~~~~~~~~lf~~i~~~~k~krL~~  413 (414)
T KOG2662|consen  381 HYAFKWVVGITFTLCIVLFVVILGYAKLKRLLG  413 (414)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            799999999999999999999999999999875

>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)	Back alignment and domain information

>PRK09546 zntB zinc transporter; Reviewed	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional	Back alignment and domain information

>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like	Back alignment and domain information

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]	Back alignment and domain information

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans	Back alignment and domain information

>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		431
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	1e-32
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261	Back alignment and structure

 Score =  123 bits (309), Expect = 1e-32
 Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 58/233 (24%)

Query: 1   MRRTGLPARDLRILD-PLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVP 59
           +    L  RDLR +D   +    T++ +   IVINL HIKA+I   +V + ++ +PS   
Sbjct: 41  LTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAA 100

Query: 60  FVEELQSRILCHYQATKSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEE 119
            +  L   +     +TK+     E                                    
Sbjct: 101 KLSVLMYDLESKLSSTKNNSQFYEH----------------------------------- 125

Query: 120 RKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKIST 179
                          + L   F+ + + LE        + K   Q     L+ L ++++ 
Sbjct: 126 ---------------RALESIFINVMSALET-------DFKLHSQICIQILNDLENEVNR 163

Query: 180 LNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENS 232
           L L  +      L     +   +RD L+ LL++D+D+A MYLT K   +   S
Sbjct: 164 LKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDNFS 216

PyMOL of 3rkg

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae} Length = 261	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		431
3rkg_A		261	Magnesium transporter MRS2, mitochondrial; matrix	100.0
4ev6_A		339	Magnesium transport protein CORA; membrane protein	99.95
2iub_A		363	CORA, divalent cation transport-related protein; m	99.95
4egw_A		280	Magnesium transport protein CORA; magnesium transp	98.92
3ck6_A		252	Putative membrane transport protein; APC91421.1, Z	98.26
3nvo_A		264	Zinc transport protein ZNTB; alpha-beta-alpha sand	98.21
2bbh_A		269	Divalent cation transport-related protein; transpo	97.08
2hn1_A		266	CORA, magnesium and cobalt transporter; integral m	96.71

>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=8.7e-56  Score=429.29  Aligned_cols=216  Identities=31%  Similarity=0.465  Sum_probs=198.2

Q ss_pred             CccCCCCCCcccccCCCC-CCCceeeecCCeEEeecccceeeeecCeEEEecCCCCCch----hHHHHHHHHhhcccccc
Q 014053            1 MRRTGLPARDLRILDPLL-SYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVV----PFVEELQSRILCHYQAT   75 (431)
Q Consensus         1 ~r~~gL~~RDLR~lDp~~-s~pssIlvR~~aIlvnle~IraII~~d~vllf~~~~~~~~----~f~~~L~~rL~~~~~~~   75 (431)
                      |+++||+|||||+|||++ +++|+|++|++||||||+||||||++|+|++||+.++.+.    .|+++|+.|+...    
T Consensus        41 ~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~~~~~~~~~~f~~~l~~~l~~~----  116 (261)
T 3rkg_A           41 LTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSST----  116 (261)
T ss_dssp             HHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSCHHHHHHHHHHHHHHHHHHHCS----
T ss_pred             HHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCCchhhhhHHHHHHHHHHHhccC----
Confidence            588999999999999986 5666799999999999999999999999999999987665    5899999998741    


Q ss_pred             ccccccCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCcchHHHHHHHHHHHHHHH
Q 014053           76 KSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCL  155 (431)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lPFEl~aLE~~L~~~~~~L  155 (431)
                                                                               ..+.+|||||||||||.++|+.|
T Consensus       117 ---------------------------------------------------------~~~~lPFEfraLEa~L~~v~~~L  139 (261)
T 3rkg_A          117 ---------------------------------------------------------KNNSQFYEHRALESIFINVMSAL  139 (261)
T ss_dssp             ---------------------------------------------------------SCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------------------------------------------CCCCCChHHHHHHHHHHHHHHHH
Confidence                                                                     02468999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHhhhhhHHHhhhhhcccCC
Q 014053          156 ENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTS  235 (431)
Q Consensus       156 e~e~~~Le~~~~~~Ld~L~~~vs~~~Lerlr~lK~~L~~l~~rv~~vr~~l~~lLddD~dm~~m~Lt~~~~~~~~~~~~~  235 (431)
                      +++++.++..+.++|++|++++++.+|++|+..|++|+.+.+||+.||++|+++||||+||++||||++.          
T Consensus       140 e~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~----------  209 (261)
T 3rkg_A          140 ETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKK----------  209 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCC----------
Confidence            9999999999999999999999999999999999999999999999999999999999999999999762          


Q ss_pred             CCCCCCccchHHhhhhccccchhhhhhhhcCCCCCccccccccccccccccccccccccCCCCcccccccccCCCccHHH
Q 014053          236 SINERDDMDDEVLQSNMNNRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHSRASHGTRTSTTHSAISKHLDVEE  315 (431)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~d~~e  315 (431)
                                                                                              +..++|+|
T Consensus       210 ------------------------------------------------------------------------~~~~d~eE  217 (261)
T 3rkg_A          210 ------------------------------------------------------------------------SPKDNFSD  217 (261)
T ss_dssp             ------------------------------------------------------------------------CTTSCCHH
T ss_pred             ------------------------------------------------------------------------CCccchHH
Confidence                                                                                    13568999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhHhhHHH
Q 014053          316 LEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHL  359 (431)
Q Consensus       316 ~E~LLE~y~~~id~i~~~l~~l~e~i~~ted~i~~~Ld~~rN~l  359 (431)
                      +|||||+|++|+|+++++++.++++|++|||+|++.||++||++
T Consensus       218 lEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~i~LD~~RN~L  261 (261)
T 3rkg_A          218 LEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVNIILDANRNSL  261 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            99999999999999999999999999999999999999999975

PyMOL of 3rkg

>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A	Back alignment and structure

>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*	Back alignment and structure

>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A	Back alignment and structure

>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1	Back alignment and structure

>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		431
d2iuba2		64	f.17.3.1 (A:286-349) Magnesium transport protein C	1e-04

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 355 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSI 414
           K N ++++   LT    +      +AGI+GMN         K G   +   +      ++
Sbjct: 1   KTNEVMKV---LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWG---YPVVLAVMGVIAV 54

Query: 415 FLYVVAIAWCKHKR 428
            + V    + K K+
Sbjct: 55  IMVV----YFKKKK 64

PyMOL of d2iuba2

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		431
d2iuba2		64	Magnesium transport protein CorA {Thermotoga marit	99.59
d2bbha1		232	Magnesium transport protein CorA, soluble domain {	97.69
d1lrza1		65	Methicillin resistance protein FemA probable tRNA-	84.83

>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: Magnesium transport protein CorA, transmembrane region
family: Magnesium transport protein CorA, transmembrane region
domain: Magnesium transport protein CorA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=2.1e-16  Score=120.11  Aligned_cols=64  Identities=20%  Similarity=0.305  Sum_probs=42.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHccccCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 014053          355 KQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNINIELFDEHKSGMQEFLWTVGGGATGSIFLYVVAIAWCKHKR  428 (431)
Q Consensus       355 ~rN~lmk~~l~LTi~t~i~~~~tlIaGiFGMN~~~~~~~~~~~~~~~F~~v~~~~~~~~v~i~~~~~~y~krk~  428 (431)
                      |+|+.||.   ||++|++|.|+|+|+|+||||+++.|+.   +++++||++++++++    +.+++++||||||
T Consensus         1 r~N~~mk~---lT~it~iflP~t~i~gifGMN~~~~P~~---~~~~~~~~~~~~~~~----~~~~~~~~f~rkk   64 (64)
T d2iuba2           1 KTNEVMKV---LTIIATIFMPLTFIAGIYGMNFEYMPEL---RWKWGYPVVLAVMGV----IAVIMVVYFKKKK   64 (64)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHTTSCC-----------------CHHHHHHHHH----HHHHHHTTTTSCC
T ss_pred             ChhHHHHH---HHHHHHHHHHHHHHHhhhccCCCCCCCC---CccHHHHHHHHHHHH----HHHHHHHHHhccC
Confidence            68999999   9999999999999999999999987764   578888887665443    3446788899886

PyMOL of d2iuba2

>d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure