Citrus Sinensis ID: 014061

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
MSVSFSSPSVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYMM
cccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHHcccccccccHHHHEEEccccccHHHHHHHHHHHHHHccccEEEEEccccccEEEEEEEccccccccccccccccccccEEEccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEEcccc
ccEEEcccccEccEEEEEccccccEEEEEcccEEcccccHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEccccc
msvsfsspsvvspvylftnnfggnkvkrvsgkclwrnqSRKMVAVVRAgpkkilfgKESREALQAGIDKLADAVsvtlgpkgrnvilsesdklkviNDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQksfpvtgrddiKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGmkidkgylspqfitnqekslvefdnakvlitdqkisTVKEIVPLLekttqlsvpLLIIAEDISSQVLETLVMNKIRGLLNVAVvkcpgfgdgkKALLQDIALMTgadflsgelgltlagatsdqlgIARKvtvksnsttivadpytKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYMM
msvsfsspsvvspvylftnnfggnkvkrvsgkclwrnqsrkmvaVVRAGPKKILFGKESREALQAGIDKLADavsvtlgpkgrnvilsesdklkvinDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLkqksfpvtgrddIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPllekttqlsvpLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIArkvtvksnsttivadpytkaEIQARIMQIKKDLAATDNAYLSRKLSeriaklsggvaVIKVCYMM
MsvsfsspsvvspvYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLiadaiikigadgviLIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYMM
*********VVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILI***********VEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCY**
********SVVSPVYLFTNNFGGNKVKRVS****************RAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQ**********IKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYMM
*********VVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYMM
********SVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCY**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MSVSFSSPSVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYMM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query431 2.2.26 [Sep-21-2011]
Q56XV8 575 Chaperonin 60 subunit alp yes no 0.948 0.711 0.709 1e-164
P08926 587 RuBisCO large subunit-bin N/A no 0.928 0.681 0.640 1e-144
P21238 586 Chaperonin 60 subunit alp no no 0.886 0.651 0.662 1e-144
P21239 546 RuBisCO large subunit-bin N/A no 0.886 0.699 0.654 1e-143
P08823 543 RuBisCO large subunit-bin N/A no 0.881 0.699 0.652 1e-142
P08824 495 RuBisCO large subunit-bin N/A no 0.853 0.743 0.665 1e-141
P34794 583 RuBisCO large subunit-bin N/A no 0.967 0.715 0.616 1e-140
Q42694 580 RuBisCO large subunit-bin N/A no 0.930 0.691 0.579 1e-133
Q2JXD4 542 60 kDa chaperonin 1 OS=Sy yes no 0.874 0.695 0.526 1e-113
Q2JKV7 539 60 kDa chaperonin 2 OS=Sy yes no 0.874 0.699 0.526 1e-113
>sp|Q56XV8|CPNA2_ARATH Chaperonin 60 subunit alpha 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60A2 PE=2 SV=1 Back     alignment and function desciption
 Score =  578 bits (1490), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 303/427 (70%), Positives = 366/427 (85%), Gaps = 18/427 (4%)

Query: 1   MSVSFSSPSVVSPVYLFTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESR 60
           +S S  SP+ +SP              R SG+   RN+ RK  +VVRAG K+IL+GK+SR
Sbjct: 4   VSPSSFSPTTISP--------------RRSGQ---RNEPRKF-SVVRAGAKRILYGKDSR 45

Query: 61  EALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLM 120
           E LQAGIDKLADAVS+TLGP+GRNV+L+E D +KVINDGVTIA++IEL DTIENAGA L+
Sbjct: 46  EKLQAGIDKLADAVSITLGPRGRNVVLAEKDTIKVINDGVTIAKSIELPDTIENAGATLI 105

Query: 121 QEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQK 180
           QEVA KMN+ AGDGTTTA+ILAREMIK+G L+++FGAN V++K GM+KTVKELV+VL+ K
Sbjct: 106 QEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRVLQMK 165

Query: 181 SFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMK 240
           S PV G++DIKAVASISAGNDEF+GNLIA+ + KIG DGVI IESSS+ ETS++VEEGMK
Sbjct: 166 SIPVQGKNDIKAVASISAGNDEFVGNLIAETVEKIGPDGVISIESSSTSETSVIVEEGMK 225

Query: 241 IDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDI 300
            DKGY+SP FITNQEKS VEFD AK+L+TDQKI++ KE+VPLLEKT+QLSVPLLIIAEDI
Sbjct: 226 FDKGYMSPHFITNQEKSTVEFDKAKILVTDQKITSAKELVPLLEKTSQLSVPLLIIAEDI 285

Query: 301 SSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATS 360
           S++VLE LV+NK +GL+NVAVVKCPG  DGKKALLQDIALMTGAD+LSG+LG++L GATS
Sbjct: 286 SAEVLEILVVNKKQGLINVAVVKCPGMLDGKKALLQDIALMTGADYLSGDLGMSLMGATS 345

Query: 361 DQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSG 420
           DQLG++R+V + +NSTTIVAD  TK EIQARI Q+KKDLA TDN+YLS+K++ERIAKL+G
Sbjct: 346 DQLGVSRRVVITANSTTIVADASTKPEIQARIAQMKKDLAETDNSYLSKKIAERIAKLTG 405

Query: 421 GVAVIKV 427
           GVAVIKV
Sbjct: 406 GVAVIKV 412
Involved in protein assisted folding.
Arabidopsis thaliana (taxid: 3702)
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function description
>sp|P21238|CPNA1_ARATH Chaperonin 60 subunit alpha 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60A1 PE=1 SV=2 Back     alignment and function description
>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2 Back     alignment and function description
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|P08824|RUBA_RICCO RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1 Back     alignment and function description
>sp|Q2JXD4|CH601_SYNJA 60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
297737979 583 unnamed protein product [Vitis vinifera] 0.944 0.698 0.800 1e-175
225423680 602 PREDICTED: chaperonin 60 subunit alpha 2 0.904 0.647 0.819 1e-173
255574519 556 rubisco subunit binding-protein alpha su 0.907 0.703 0.798 1e-173
124301264 595 GroEL-like chaperone, ATPase [Medicago t 0.886 0.642 0.798 1e-172
357475213 579 RuBisCO large subunit-binding protein su 0.886 0.659 0.798 1e-172
449455391 587 PREDICTED: chaperonin 60 subunit alpha 2 0.981 0.720 0.766 1e-171
356519784 548 PREDICTED: ruBisCO large subunit-binding 0.888 0.698 0.809 1e-166
297807919 575 EMB3007 [Arabidopsis lyrata subsp. lyrat 0.948 0.711 0.714 1e-163
356577105 589 PREDICTED: ruBisCO large subunit-binding 0.888 0.650 0.801 1e-163
15239580 575 TCP-1/cpn60 chaperonin family protein [A 0.948 0.711 0.709 1e-162
>gi|297737979|emb|CBI27180.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 329/411 (80%), Positives = 368/411 (89%), Gaps = 4/411 (0%)

Query: 17  FTNNFGGNKVKRVSGKCLWRNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSV 76
           F +N  G +  RV G  LWRN        VRAGPK+I F +E RE LQAGIDKLADAVS+
Sbjct: 16  FFSNLNGEQ--RVCG--LWRNPRIFRSLRVRAGPKRISFDRECREGLQAGIDKLADAVSL 71

Query: 77  TLGPKGRNVILSESDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTT 136
           TLGPKGRNVILSE+  LKVINDGVTIARAIELSD IENAGA LMQEVASK ND+AGDGTT
Sbjct: 72  TLGPKGRNVILSEAGTLKVINDGVTIARAIELSDAIENAGATLMQEVASKTNDVAGDGTT 131

Query: 137 TAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASI 196
           TA+ILAREMIKSG+L V+FGANP+ LKKGM KTV+ELVKVLK+KSFPV GRDDI+AVASI
Sbjct: 132 TAIILAREMIKSGLLVVAFGANPIGLKKGMDKTVRELVKVLKKKSFPVKGRDDIRAVASI 191

Query: 197 SAGNDEFIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEK 256
           SAGND+F+GNLIA+AI KIG DGVI IESSSS ETS+++EEGMKIDKGY+SP FITNQ+K
Sbjct: 192 SAGNDDFVGNLIAEAIDKIGPDGVISIESSSSSETSVIIEEGMKIDKGYMSPHFITNQDK 251

Query: 257 SLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGL 316
           S+VEF+NAKVL+TDQKIST+K IVPLLEKTTQLSVPLLIIAEDISSQVLETLV+NK++G+
Sbjct: 252 SIVEFENAKVLVTDQKISTIKGIVPLLEKTTQLSVPLLIIAEDISSQVLETLVVNKMQGI 311

Query: 317 LNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNST 376
           +NVAVVKCPGFG+GKKALLQDIAL+TGADFLSG+LGLTL  ATSDQLGIARKVT+ SNST
Sbjct: 312 INVAVVKCPGFGEGKKALLQDIALLTGADFLSGDLGLTLDSATSDQLGIARKVTITSNST 371

Query: 377 TIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKV 427
           T VADP TK EIQARI+QIKKDLA TD++YLSRKLSERIAKLSGGVA+IKV
Sbjct: 372 TFVADPSTKPEIQARILQIKKDLAETDSSYLSRKLSERIAKLSGGVAIIKV 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225423680|ref|XP_002276547.1| PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255574519|ref|XP_002528171.1| rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis] gi|223532428|gb|EEF34222.1| rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|124301264|gb|ABC75363.2| GroEL-like chaperone, ATPase [Medicago truncatula] Back     alignment and taxonomy information
>gi|357475213|ref|XP_003607892.1| RuBisCO large subunit-binding protein subunit alpha [Medicago truncatula] gi|355508947|gb|AES90089.1| RuBisCO large subunit-binding protein subunit alpha [Medicago truncatula] Back     alignment and taxonomy information
>gi|449455391|ref|XP_004145436.1| PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356519784|ref|XP_003528549.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|297807919|ref|XP_002871843.1| EMB3007 [Arabidopsis lyrata subsp. lyrata] gi|297317680|gb|EFH48102.1| EMB3007 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356577105|ref|XP_003556668.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|15239580|ref|NP_197383.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] gi|75283542|sp|Q56XV8.1|CPNA2_ARATH RecName: Full=Chaperonin 60 subunit alpha 2, chloroplastic; Short=CPN-60 alpha 2; AltName: Full=Protein EMBRYO DEFECTIVE 3007; Flags: Precursor gi|62320478|dbj|BAD94998.1| chaperonin 60 alpha chain - like protein [Arabidopsis thaliana] gi|332005233|gb|AED92616.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query431
TAIR|locus:2144955 575 Cpn60alpha2 "chaperonin-60alph 0.907 0.68 0.727 2.8e-146
TAIR|locus:2057841 586 CPN60A "chaperonin-60alpha" [A 0.886 0.651 0.636 8e-124
UNIPROTKB|Q05972 541 groL1 "60 kDa chaperonin 1" [S 0.872 0.695 0.468 8.3e-90
TIGR_CMR|CJE_1356 545 CJE_1356 "co-chaperonin GroEL" 0.874 0.691 0.478 4.1e-88
TIGR_CMR|BA_0267 544 BA_0267 "chaperonin, 60 kDa" [ 0.872 0.691 0.492 6.7e-88
TIGR_CMR|GSU_3340 544 GSU_3340 "60 kDa chaperonin" [ 0.870 0.689 0.465 2e-86
TIGR_CMR|CHY_0807 540 CHY_0807 "chaperonin GroL" [Ca 0.877 0.7 0.480 3.3e-86
TAIR|locus:2193839 600 CPN60B "chaperonin 60 beta" [A 0.930 0.668 0.441 2.4e-85
TIGR_CMR|SO_0704 545 SO_0704 "chaperonin GroEL" [Sh 0.874 0.691 0.449 5e-85
UNIPROTKB|P0A6F5 548 groL [Escherichia coli K-12 (t 0.874 0.687 0.452 6.4e-85
TAIR|locus:2144955 Cpn60alpha2 "chaperonin-60alpha2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
 Identities = 285/392 (72%), Positives = 342/392 (87%)

Query:    36 RNQSRKMVAVVRAGPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKV 95
             RN+ RK  +VVRAG K+IL+GK+SRE LQAGIDKLADAVS+TLGP+GRNV+L+E D +KV
Sbjct:    22 RNEPRKF-SVVRAGAKRILYGKDSREKLQAGIDKLADAVSITLGPRGRNVVLAEKDTIKV 80

Query:    96 INDGVTIARAIELSDTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSF 155
             INDGVTIA++IEL DTIENAGA L+QEVA KMN+ AGDGTTTA+ILAREMIK+G L+++F
Sbjct:    81 INDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAF 140

Query:   156 GANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXX 215
             GAN V++K GM+KTVKELV+VL+ KS PV G++DIKAVASISAGNDEF+GNL        
Sbjct:   141 GANAVSVKNGMNKTVKELVRVLQMKSIPVQGKNDIKAVASISAGNDEFVGNLIAETVEKI 200

Query:   216 XXXXXXLIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKIST 275
                    IESSS+ ETS++VEEGMK DKGY+SP FITNQEKS VEFD AK+L+TDQKI++
Sbjct:   201 GPDGVISIESSSTSETSVIVEEGMKFDKGYMSPHFITNQEKSTVEFDKAKILVTDQKITS 260

Query:   276 VKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALL 335
              KE+VPLLEKT+QLSVPLLIIAEDIS++VLE LV+NK +GL+NVAVVKCPG  DGKKALL
Sbjct:   261 AKELVPLLEKTSQLSVPLLIIAEDISAEVLEILVVNKKQGLINVAVVKCPGMLDGKKALL 320

Query:   336 QDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQI 395
             QDIALMTGAD+LSG+LG++L GATSDQLG++R+V + +NSTTIVAD  TK EIQARI Q+
Sbjct:   321 QDIALMTGADYLSGDLGMSLMGATSDQLGVSRRVVITANSTTIVADASTKPEIQARIAQM 380

Query:   396 KKDLAATDNAYLSRKLSERIAKLSGGVAVIKV 427
             KKDLA TDN+YLS+K++ERIAKL+GGVAVIKV
Sbjct:   381 KKDLAETDNSYLSKKIAERIAKLTGGVAVIKV 412
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0006457 "protein folding" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009408 "response to heat" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:2057841 CPN60A "chaperonin-60alpha" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0267 BA_0267 "chaperonin, 60 kDa" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0704 SO_0704 "chaperonin GroEL" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6F5 groL [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.52640.87470.6994yesno
Q8YVS8CH602_NOSS1No assigned EC number0.53430.87230.6714yesno
B9KCR7CH60_CAMLRNo assigned EC number0.50790.87470.6917yesno
B0CFQ6CH601_ACAM1No assigned EC number0.52110.87230.6738yesno
O69289CH60_CAMJENo assigned EC number0.50520.87470.6917yesno
B8E1A9CH60_DICTDNo assigned EC number0.52020.85840.6877yesno
B9MLY9CH60_CALBDNo assigned EC number0.51320.87230.6975yesno
Q5HTP2CH60_CAMJRNo assigned EC number0.50520.87470.6917yesno
A7ZCV2CH60_CAMC1No assigned EC number0.51320.87470.6930yesno
A8FMS6CH60_CAMJ8No assigned EC number0.50520.87470.6917yesno
A4XJ09CH60_CALS8No assigned EC number0.51320.87230.6975yesno
A1W0K4CH60_CAMJJNo assigned EC number0.50520.87470.6917yesno
A7GZ43CH60_CAMC5No assigned EC number0.51050.87470.6930yesno
Q119S1CH601_TRIEINo assigned EC number0.53170.87230.6702yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.53700.87230.6714yesno
Q5N3T6CH602_SYNP6No assigned EC number0.51580.87470.6792yesno
Q2JXD4CH601_SYNJANo assigned EC number0.52640.87470.6955yesno
P0A337CH602_THEEBNo assigned EC number0.50520.87230.6924yesno
Q56XV8CPNA2_ARATHNo assigned EC number0.70960.94890.7113yesno
Q8R5X7CH60_FUSNNNo assigned EC number0.52640.87230.6975yesno
Q7MBC7CH601_GLOVINo assigned EC number0.52640.87230.6937yesno
B9L698CH60_NAUPANo assigned EC number0.51970.87470.6917yesno
B8D0Z4CH60_HALOHNo assigned EC number0.52110.87470.6892yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.2796.1
annotation not avaliable (541 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2088.1
hypothetical protein (955 aa)
      • 0.552
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
  •   • 0.520
estExt_Genewise1_v1.C_LG_VIII0130
hypothetical protein (97 aa)
•     • 0.501
estExt_fgenesh4_pm.C_LG_I0780
hypothetical protein (97 aa)
•     • 0.501
estExt_fgenesh4_pg.C_LG_X1007
hypothetical protein (97 aa)
•     • 0.475
estExt_fgenesh4_pm.C_LG_IX0449
SubName- Full=Putative uncharacterized protein; (97 aa)
•     • 0.460
estExt_Genewise1_v1.C_LG_XVIII0619
hypothetical protein (258 aa)
• •   • 0.450
estExt_Genewise1_v1.C_280199
SubName- Full=Putative uncharacterized protein; (256 aa)
• ••  • 0.427
rps3
RecName- Full=30S ribosomal protein S3, chloroplastic; (74 aa)
  •     0.421
grail3.3134000101
Predicted protein (100 aa)
      • 0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-172
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-167
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 1e-163
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-143
CHL00093 529 CHL00093, groEL, chaperonin GroEL 1e-142
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-137
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-135
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-119
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-115
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-110
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 2e-91
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 7e-73
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 6e-63
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 7e-21
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 7e-12
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 7e-12
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-11
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-11
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 8e-11
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 3e-10
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-09
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 2e-09
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 5e-09
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 2e-08
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-08
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 3e-08
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 3e-08
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 1e-07
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 3e-07
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-06
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 2e-06
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 4e-06
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-05
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  527 bits (1360), Expect = 0.0
 Identities = 204/378 (53%), Positives = 274/378 (72%), Gaps = 1/378 (0%)

Query: 51  KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELS 109
           K I FG+E+R+AL  G++KLADAV VTLGPKGRNV++ +S    K+  DGVT+A+ IEL 
Sbjct: 1   KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60

Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
           D  EN GA L++EVASK ND+AGDGTTTA +LAR +IK G+ +V+ GANP+ LK+G+ K 
Sbjct: 61  DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120

Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSF 229
           V+ +V+ LK+ S PV  +++I  VA+ISA  DE IG LIA+A+ K+G DGVI +E   + 
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180

Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
           ET + V EGM+ D+GYLSP F+T+ EK  VE +N  +L+TD+KIS+++E++P+LE   + 
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240

Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
             PLLIIAED+  + L TLV+NK+RG L V  VK PGFGD +KA+L+DIA++TG   +S 
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300

Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
           ELGL L   T + LG A+KV V  + TTI+     KA I+ARI QI+K +  T + Y   
Sbjct: 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360

Query: 410 KLSERIAKLSGGVAVIKV 427
           KL ER+AKLSGGVAVIKV
Sbjct: 361 KLQERLAKLSGGVAVIKV 378

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 431
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0356 550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0361 543 consensus Chaperonin complex component, TCP-1 eta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0360 545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0363 527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0362 537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0364 527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0359 520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357 400 consensus Chaperonin complex component, TCP-1 epsi 99.98
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.9
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.85
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 98.9
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 98.28
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 92.69
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-87  Score=717.76  Aligned_cols=384  Identities=47%  Similarity=0.744  Sum_probs=375.3

Q ss_pred             HhhcchhhhccH--HHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHH
Q 014061           46 VRAGPKKILFGK--ESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQE  122 (431)
Q Consensus        46 ~~~~~k~~~~g~--~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e  122 (431)
                      .+.|+|++.||.  +||+.+++||+.|+++|++||||+||||||++ +|+|+|||||+||+|+|+++||+||+||+|+++
T Consensus        52 ~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~  131 (600)
T PLN03167         52 KVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQ  131 (600)
T ss_pred             hhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHH
Confidence            446789999999  79999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChH
Q 014061          123 VASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDE  202 (431)
Q Consensus       123 ~a~~~~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~  202 (431)
                      +|++||+++||||||++|||++||+++.+++++|+||..|++||++|.+.+++.|++++.|+++ ++|.++|++|+++++
T Consensus       132 ~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~  210 (600)
T PLN03167        132 AAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNY  210 (600)
T ss_pred             HHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcH
Confidence            9999999999999999999999999999999999999999999999999999999999999975 679999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHH
Q 014061          203 FIGNLIADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPL  282 (431)
Q Consensus       203 ~l~~li~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~  282 (431)
                      .|++|++||+.+++++|.|.+++|++++|++++++|++|++||.||||++++++|+++++||+||++|++|+++++++++
T Consensus       211 ~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~  290 (600)
T PLN03167        211 EVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGI  290 (600)
T ss_pred             HHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHH
Confidence            99999999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCC
Q 014061          283 LEKTTQLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQ  362 (431)
Q Consensus       283 le~i~~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~  362 (431)
                      ++.+.+.|+|+||++++|++++|++|+.|+++|.++|+|||+|+||+.++++|+|||++|||++++++.|++++++++++
T Consensus       291 le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~  370 (600)
T PLN03167        291 LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEV  370 (600)
T ss_pred             HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             CCCceEEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061          363 LGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM  430 (431)
Q Consensus       363 LG~a~~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~  430 (431)
                      ||+|++|++++++|+++++.++++.+++|+.+|+.+++.++++|++++|++||++|+|++++|+|||+
T Consensus       371 LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~  438 (600)
T PLN03167        371 LGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQ  438 (600)
T ss_pred             CceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999996

>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 3e-92
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 6e-92
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 1e-87
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-87
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-87
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-87
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 1e-87
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 1e-87
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 2e-87
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 2e-86
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 2e-86
1ss8_A 524 Groel Length = 524 3e-86
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 3e-86
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 4e-86
1oel_A 547 Conformational Variability In The Refined Structure 5e-86
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 6e-86
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 1e-85
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 2e-74
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 4e-46
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-45
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 9e-45
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 1e-44
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 2e-44
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 8e-37
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 1e-35
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 3e-34
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 8e-29
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 5e-10
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-09
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 1e-08
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 1e-08
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 1e-08
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 1e-08
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 1e-08
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-08
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-08
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-08
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-08
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 2e-08
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-07
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-07
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 3e-07
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-07
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-07
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-07
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-06
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 3e-06
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-06
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-06
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-06
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 9e-06
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-05
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-05
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-05
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 6e-04
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  335 bits (859), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/378 (47%), Positives = 252/378 (66%), Gaps = 2/378 (0%)
Query: 51  KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSES-DKLKVINDGVTIARAIELS 109
           K ++F + +R AL+ G++ +A+AV VTLGP+GRNV+L +      +  DGVT+A+ +EL 
Sbjct: 3   KILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELE 62
Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
           D +EN GA L++EVASK ND+AGDGTTTA +LA+ +++ G+ +V+ GANP+ALK+G+ K 
Sbjct: 63  DHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKA 122
Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLXXXXXXXXXXXXXXLIESSSSF 229
           V+  V+ +K  + PV  R  I+ VA+ISA ND  +G L               +E S S 
Sbjct: 123 VEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKSL 181
Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
           ET +   EG + DKGY+SP F+TN E      ++A +LI ++K+S V+E++P+LE+  Q 
Sbjct: 182 ETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT 241
Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
             PLLIIAED+  + L TLV+NK+RG L+VA VK PGFGD +K +L+DIA +TG   +S 
Sbjct: 242 GKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISE 301
Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
           ELG  L  AT   LG A +V +  + TTIV     K +I+ARI  IKK+L  TD+ Y   
Sbjct: 302 ELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYARE 361
Query: 410 KLSERIAKLSGGVAVIKV 427
           KL ER+AKL+GGVAVI+V
Sbjct: 362 KLQERLAKLAGGVAVIRV 379
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query431
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 1e-169
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 1e-168
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-167
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 1e-167
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 1e-79
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 2e-78
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 1e-58
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 2e-17
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 2e-17
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 3e-17
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-16
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-16
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 2e-16
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 3e-16
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 3e-16
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 3e-16
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 4e-16
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 7e-16
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 9e-16
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-15
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 2e-15
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 2e-15
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 3e-15
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 3e-15
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 4e-15
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 8e-15
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 4e-14
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 8e-14
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
 Score =  483 bits (1247), Expect = e-169
 Identities = 178/378 (47%), Positives = 253/378 (66%), Gaps = 1/378 (0%)

Query: 51  KKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSESDKLKVI-NDGVTIARAIELS 109
           K + FG ++   +  G++ LADAV VTLGPKGRNV+L +S     I  DGV++AR IEL 
Sbjct: 3   KDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELE 62

Query: 110 DTIENAGAMLMQEVASKMNDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKT 169
           D  EN GA +++EVASK ND AGDGTTTA +LA+ +I  G+ +V+ G NP+ LK+G+ K 
Sbjct: 63  DKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKA 122

Query: 170 VKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNLIADAIIKIGADGVILIESSSSF 229
           V   V+ LK  S P +    I  V +ISA +DE +G LIA+A+ K+G +GVI +E  +  
Sbjct: 123 VTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGL 182

Query: 230 ETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQL 289
           +  + V EGM+ D+GYLSP FI   E   VE ++  +L+ D+KIS ++E++P+LE   + 
Sbjct: 183 QDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKA 242

Query: 290 SVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSG 349
             PLLIIAED+  + L TLV+N +RG++ VA VK PGFGD +KA+LQDIA +TG   +S 
Sbjct: 243 GKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISE 302

Query: 350 ELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSR 409
           E+G+ L  AT + LG A++V +  ++TTI+     +A IQ R+ QI++ +    + Y   
Sbjct: 303 EIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDRE 362

Query: 410 KLSERIAKLSGGVAVIKV 427
           KL ER+AKL+GGVAVIKV
Sbjct: 363 KLQERVAKLAGGVAVIKV 380
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.86
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.85
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=1.5e-95  Score=773.31  Aligned_cols=382  Identities=46%  Similarity=0.743  Sum_probs=377.1

Q ss_pred             cchhhhccHHHHHHHHHHHHHHHHhhhcccCccccceeeec-CCceEEecChHHHHhhhcccCchhhHHhHHHHHHHhhc
Q 014061           49 GPKKILFGKESREALQAGIDKLADAVSVTLGPKGRNVILSE-SDKLKVINDGVTIARAIELSDTIENAGAMLMQEVASKM  127 (431)
Q Consensus        49 ~~k~~~~g~~ar~~~~~~i~~la~~VktTlGP~G~~kmI~~-~g~~~ITnDG~TIlk~i~l~hP~en~gakll~e~a~~~  127 (431)
                      ++|++.||.++|.+|+.||+.|+++|+|||||+||||||++ +|+|+|||||+||||+|+++||+|||||||++++|++|
T Consensus         1 ~~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~q   80 (547)
T 1kp8_A            1 AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKA   80 (547)
T ss_dssp             CCEEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhh
Confidence            36899999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             ccccCCCcchHHHhHHHHHHhhhhhhccCCChhhHHHHHHHHHHHHHHHHHccCcccCChHHHHHHHhhcCCChHHHHHH
Q 014061          128 NDLAGDGTTTAVILAREMIKSGMLSVSFGANPVALKKGMHKTVKELVKVLKQKSFPVTGRDDIKAVASISAGNDEFIGNL  207 (431)
Q Consensus       128 ~~~vGDGTTt~vvLa~~Ll~~~~~li~~G~~p~~I~~G~~~a~~~~l~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l  207 (431)
                      |+++||||||+||||++||+++.+++++|+||+.|++||++|++.++++|+++++|+++.++|.++|++|++++++++++
T Consensus        81 d~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~l  160 (547)
T 1kp8_A           81 NDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKL  160 (547)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHH
T ss_pred             ccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCceEEecCCCceeeeEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHH
Q 014061          208 IADAIIKIGADGVILIESSSSFETSIVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTT  287 (431)
Q Consensus       208 i~~Av~~vg~~g~I~i~~G~~~~dsl~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~  287 (431)
                      +++|+.+++++|.|++++|++++||+++++||+|+++|.||||++++++|+++++|||||++|++|++++++++++|++.
T Consensus       161 iadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~  240 (547)
T 1kp8_A          161 IAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA  240 (547)
T ss_dssp             HHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHH
T ss_pred             HHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCEEEEecCCchHHHHHHHHcccccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCce
Q 014061          288 QLSVPLLIIAEDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIAR  367 (431)
Q Consensus       288 ~~g~~lvIi~~~I~~~aL~~L~~n~l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~  367 (431)
                      +.|+||||++++|+++|+++|+.|+++|.++|+|||+|+||++|+++|+|||++|||++++++.|++++++++++||+|+
T Consensus       241 ~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~  320 (547)
T 1kp8_A          241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAK  320 (547)
T ss_dssp             GGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEE
T ss_pred             hcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCeEEEEeCcc
Q 014061          368 KVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAKLSGGVAVIKVCYM  430 (431)
Q Consensus       368 ~V~i~~~~~~ii~g~~~~~~i~~ri~~l~~~i~~~~~~~~~~~l~eRla~l~g~~a~i~vGg~  430 (431)
                      +|++++++|++++||++++.+++|++||+.+++.++|+||||+|+||||||+||+|+|.|||+
T Consensus       321 ~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~  383 (547)
T 1kp8_A          321 RVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAA  383 (547)
T ss_dssp             EEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCS
T ss_pred             EEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCC
Confidence            999999999999999999999999999999999999999999999999999999999999996
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 431
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 7e-71
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 1e-70
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 3e-68
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 3e-58
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 5e-44
d1kp8a1 252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 0.003
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 6e-37
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 7e-35
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 6e-31
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-22
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 1e-22
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-20
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 2e-18
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 5e-16
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 6e-16
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 2e-15
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score =  219 bits (560), Expect = 7e-71
 Identities = 86/184 (46%), Positives = 119/184 (64%)

Query: 238 GMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIA 297
           GM+ DKGY+S  F+T+ E+     ++  +L+   K+STVK+++PLLEK      PLLIIA
Sbjct: 1   GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60

Query: 298 EDISSQVLETLVMNKIRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAG 357
           ED+  + L TLV+NKIRG      VK PGFGD +KA+LQD+A++TG   +S E+GLTL  
Sbjct: 61  EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120

Query: 358 ATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARIMQIKKDLAATDNAYLSRKLSERIAK 417
           A    LG ARKV V  + TTIV        I  R+ QI++++  +D+ Y   KL ER+AK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180

Query: 418 LSGG 421
           L+GG
Sbjct: 181 LAGG 184
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query431
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.83
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.83
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.83
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.79
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.67
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.66
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.47
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.44
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.41
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.6
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.54
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.46
d1ioka1 252 GroEL, E domain {Paracoccus denitrificans [TaxId: 93.14
d1kp8a1 252 GroEL, E domain {Escherichia coli [TaxId: 562]} 89.6
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-49  Score=366.93  Aligned_cols=190  Identities=45%  Similarity=0.761  Sum_probs=187.0

Q ss_pred             eEeeeceEEeccCCCCccccccccCeeEeeCceeEeeccccCCHHhHHHHHHHHHhCCCCEEEEecCCchHHHHHHHHcc
Q 014061          233 IVVEEGMKIDKGYLSPQFITNQEKSLVEFDNAKVLITDQKISTVKEIVPLLEKTTQLSVPLLIIAEDISSQVLETLVMNK  312 (431)
Q Consensus       233 l~lv~G~~~~~g~~sp~f~~~~~~~~~~l~npkIll~d~~I~~~~~l~~~le~i~~~g~~lvIi~~~I~~~aL~~L~~n~  312 (431)
                      +++.+||.||+||.||||+|++++|.++++||+||++|.+|+++++++|+||.+.+.++||||++++|+++||++|+.|+
T Consensus         4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~   83 (193)
T d1kida_           4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNT   83 (193)
T ss_dssp             CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred             ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhh
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeeeeecCCCCCCCchhhHHHHHHHhCCeEeecCCCccccCCCCCCCCCceEEEEeCCeEEEEeCCCCHHHHHHHH
Q 014061          313 IRGLLNVAVVKCPGFGDGKKALLQDIALMTGADFLSGELGLTLAGATSDQLGIARKVTVKSNSTTIVADPYTKAEIQARI  392 (431)
Q Consensus       313 l~G~~~v~aVk~~~~g~~r~~~LedIa~~TGa~ii~~~~~~~l~~~~~~~LG~a~~V~i~~~~~~ii~g~~~~~~i~~ri  392 (431)
                      ++|.++|||||+|+||+.|++.|+|||.+|||++++++.|.++++++.++||+|++|++++++|+|+++.++++.|++|+
T Consensus        84 ~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~~g~~l~~~~~~~LG~~~kv~itk~~T~ii~g~g~~~~I~~Ri  163 (193)
T d1kida_          84 MRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRV  163 (193)
T ss_dssp             HTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECCCHHHHHHHH
T ss_pred             hccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechhcccccccCCHhHcCcccEEEEecCceEEEcCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhhcCCe
Q 014061          393 MQIKKDLAATDNAYLSRKLSERIAKLSGGV  422 (431)
Q Consensus       393 ~~l~~~i~~~~~~~~~~~l~eRla~l~g~~  422 (431)
                      ++|+.++++++++|+|++|+||||||+|||
T Consensus       164 ~~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         164 AQIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999996
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure