Citrus Sinensis ID: 014064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MTKKARHISEDAPEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEccHHHHHHHHccccccEEEEEccccccEEEEEEccccEEEEEEEEEcccEEEEEEcccEEEEEEEcccEEEEEccccccEEEEEEEcccccccEEcccccccccccEEEEEEcccEEEEEccccccccEEEEEEEEEccccccHHHHHHHHcccccccEEEEEEEccccccccccccccccccccEEEEEEEEEEccHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccHHHEEcccccccccccHcHEEEEEEEEEEccHHHHHHHHcccHHHEEEEEEcccccEEEEEEEcccEEEEEEEccccccEEEEEccccEEEEEEcccccEEEEcccccEEEEEEccccccHHHHHHHHHHHccccEEEEEccccEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccEEEEEEccccccccccccccccHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcEEEEEcccccccHHHHHHHHHccccccccEEEccccccc
Coil and Loop (DISEMBL)
mtkkarhisedapekqKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTsldfdkkvkymsfppdyqqskyISWVNKVLELHrgsrinqfRICFRLdakhkcniTNWVNTAIAKNVrnfeldlspgtydnyyeIPQECYKNlqsgcglsgikslrSLTLCAVNVTGEVVEFFIhncpllenlritqspdllslkvvgssiplkcldiqfcYSIKEIEisapnllsfkyigqdinlhvgslpqlVDVVFHVTPMVQKMHCIGSIVsylpqlktleldGCNEVFAQFsqrefpklmnlnisFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGrrigkkrhqisKHSHQHLKLVElqgfngreiDFELAFYVFENATMLEKMiikpsgsrkrttlknSTNMlkaklprgvkltvgscdf
Flexible Loop (DISEMBL)
mtkkarhisedapekqkeNLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFttsldfdkkVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRhqiskhshqhLKLVELQGFNGREIDFELAFYVFENATMLEkmiikpsgsrkrttlknstnmlkaklprgvkltvgscdf
Low Complexity Region (SEG)
MTKKARHISEDAPEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Disordered region (IsUnstruct)
********************EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII***********************************
Disordered Region (DISOPRED)
**************************FPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTT***********LPRGVKLTVGSCDF
Disordered Region (DISEMBL)
******************NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRI************QHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Disordered Region (DISPRO)
********************EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKKARHISEDAPEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
Q0WR05	457	F-box/LRR-repeat protein	no	no	0.723	0.682	0.276	9e-18
Q84W80	481	F-box/LRR-repeat protein	no	no	0.396	0.355	0.307	2e-17
Q9C8Y6	442	FBD-associated F-box prot	no	no	0.821	0.800	0.235	6e-16
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.805	0.781	0.251	1e-15
Q9FWZ1	451	F-box/LRR-repeat protein	no	no	0.802	0.767	0.225	3e-15
Q9M190	532	Putative F-box/LRR-repeat	no	no	0.800	0.648	0.242	4e-15
Q9SV82	409	FBD-associated F-box prot	no	no	0.849	0.894	0.267	4e-15
Q9ZV93	458	F-box/FBD/LRR-repeat prot	no	no	0.860	0.810	0.237	2e-14
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.863	0.823	0.230	6e-14
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.459	0.434	0.282	6e-14

>sp|Q0WR05|FBL39_ARATH F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 46/358 (12%)

Query: 19  NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPD 78
           N +D  SR PD++L  I+S ++ KEA  TSVLS RWK ++   ++LD D +    S P  
Sbjct: 2   NAKDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDR---QSVPKT 58

Query: 79  YQ-----QSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVR 130
            Q        Y+++V+K+L+  RGS I +  +   +  +   +   I +W+   +   V 
Sbjct: 59  KQNRIEIHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGV- 117

Query: 131 NFELDLSPGTYDNYYEIPQECYKN-----LQSGCGLS-------GIKSLRSLTLCAVNVT 178
             +LD+          +P   +K+     L+ G G +        +  LR+L L +VN  
Sbjct: 118 -MDLDVFITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFV 176

Query: 179 G--EVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL 236
           G   VV   I  CP+LE L + +    +      SS  LK L I+F      I + APNL
Sbjct: 177 GGHNVVGTLISRCPVLEEL-VVEERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNL 235

Query: 237 LSFKY----IGQDINLHVGSLPQL-VDVVFHVTPMVQ-KMHCIGSI-------VSYLPQL 283
           + +K+    +G+  N+ + SL +  +++    T MV  +   +GSI       ++ +  +
Sbjct: 236 IYYKHSGYVLGKYPNVKLDSLIEARLNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNV 295

Query: 284 KTLELDGCNEVFAQFSQREFP---KLMNLNISFTAANQETLLGLSFIMKACPFLEKLV 338
           + L L         FS +E P    L++L+I    A    +L L  ++K  P LE L+
Sbjct: 296 RILHLSSHTLELLYFSCKEMPLFDSLVSLSIGNDKARGWQMLPL--LIKNSPNLETLI 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 50/221 (22%)

Query: 22  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
           D  SR PDDIL  I+S L  + A +TSVLS RW+++W+ T SL F +        PD   
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRDR------PD--- 87

Query: 82  SKYISWVNKVLELHRGSRINQFRICFRLDAK------HKCNITNWVNTAIAKNVRNFELD 135
                 +N++L+ +R  ++  FRIC    A          +I +W+N A+++NV N  L 
Sbjct: 88  ---APCINRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVENLSLY 144

Query: 136 LSPGTYDNYYEIPQECYKN-------LQSGCGLSGIK----------SLRSLTLCAVNVT 178
           L    YD    IP+  Y N       L  GC    I           SL++L+L   N++
Sbjct: 145 LDEDKYD----IPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKNLSLYHCNIS 200

Query: 179 GEVVEFFIHNCPLLEN-----------LRITQSPDLLSLKV 208
            E +   +  CP+LE+           L +++SP L++L++
Sbjct: 201 DESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8Y6|FBD5_ARATH FBD-associated F-box protein At1g66310 OS=Arabidopsis thaliana GN=At1g66310 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 193/446 (43%), Gaps = 92/446 (20%)

Query: 15  KQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMS 74
           KQ ++  DW    P+ +L HI+  L  K+  +TSVLSS+W+ LW     LD D       
Sbjct: 12  KQSDDEVDWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDSS----- 66

Query: 75  FPPDY-QQSKYISWVNKVLELHRGSRINQFRICFRL-----DAKHKCNITNWVNTAIAKN 128
              D+ + + ++S++++ +  H    + +F++ F       +     +I  W+N  + + 
Sbjct: 67  ---DFTENNTFVSFIDRFMSFHSDLYLKKFKLRFFCNLNGDEVSENAHIARWINDVVKRK 123

Query: 129 VRNFELDLSPGTYDNYYEIPQECY--KNLQS--GCG-------LSGIKSLRSLTLCAVNV 177
           V N  LDL+ G      EIP   Y   +L S   CG       L+ +  ++ + L  V  
Sbjct: 124 VHN--LDLTWGA----VEIPPILYLCNSLVSLKLCGVTLPNLELTSLPCVKVIVLEWVKF 177

Query: 178 TGEV-VEFFIHNCPLLENLRITQSP--DLLSLKVVGSSIPLKCLDIQFCYSIKE------ 228
             ++ +E  I  C +LE+L + + P  ++  L+V   S+      ++F Y+         
Sbjct: 178 ANDLALEMLISGCLVLESLTLCRRPNDNVKILRVSSQSL------LRFSYNGSSYKGLHD 231

Query: 229 ---IEISAPNLLSFKY-----------------IGQDINLHVGSLPQLVDVVFHVTPMVQ 268
              +EI+AP L   K                  +  DIN+ +G      D        + 
Sbjct: 232 DLVLEINAPKLKILKLFSHQLTTSFIRNTSSSIVEADINIGLGKKFDPKD--------LP 283

Query: 269 KMHCIGSIVSYLPQLKTLELDGCN-EVFAQFSQRE----FPKLMNLNISFTAANQETLLG 323
           K + I + ++ +  +K L +  C  EV   +S+ E    F  L  L++ F   + E    
Sbjct: 284 KRNVICNFLAGISSVKNLFIAPCTLEVIYDYSRCEPLPLFCNLSYLSVDFYNNSWEI--- 340

Query: 324 LSFIMKACPFLEKLVLQIWNNGRR----IGKKRHQISKHSHQHLKLVELQG-FNGREIDF 378
           L   +++CP L+ LV+    + +R    +   R  +S      L+ VE++    G   + 
Sbjct: 341 LPIFLESCPNLKSLVVGSITSPKRRTSVLSGPRRLLSS-----LEYVEIESPLTGEVFEM 395

Query: 379 ELAFYVFENATMLEKMIIKPSGSRKR 404
           +L  Y+ EN+ +L+K+ I    S ++
Sbjct: 396 KLVSYLLENSPILKKLTINLDDSSRK 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 181/421 (42%), Gaps = 74/421 (17%)

Query: 21  EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQ 80
           E+  S+ PD ++  I+S L+ K+A RTS+LS+RW+ LW     LDFD + +  SF     
Sbjct: 17  EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSR-ELRSF----- 70

Query: 81  QSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT 140
            S+++S+      LH+ S I + R+C   D      +T+W++      +++  +D+S  T
Sbjct: 71  -SEFVSFAGSFFYLHKDSYIQKLRVCI-YDLAGNYYLTSWIDLVTRHRIQH--IDISVFT 126

Query: 141 YDNYYEIPQECY-----------KNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNC 189
              +  IP   Y           +          +  L+ L L  VN T E     I +C
Sbjct: 127 CSGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISC 186

Query: 190 -PLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS-----------IKEIEISAPNLL 237
            P+LE L I +S +     +   S  LK ++I   +            ++ + I A ++ 
Sbjct: 187 SPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSIK 246

Query: 238 SFKYIGQDINLHVGSLPQLVD---------------VVFHVTPMVQKMHCIGSIVSYLPQ 282
           S ++I       V     L+D                +  V  +V +   I  I  Y+ +
Sbjct: 247 SIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYM-E 305

Query: 283 LKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 342
           L+ L+              +F  L  L+   + +N E LL L   +K+CP LE L L++ 
Sbjct: 306 LEPLQ--------------QFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLV 348

Query: 343 NNGRRIGKKRHQISKHSH-----QHLKLVELQG-FNGREIDFELAFYVFENATMLEKMII 396
           +  +   KK   +S           LK V+L+    G   + ++A Y  EN+T+LEK+ +
Sbjct: 349 DYEK--NKKEEVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTL 406

Query: 397 K 397
           K
Sbjct: 407 K 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 198/447 (44%), Gaps = 101/447 (22%)

Query: 22  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
           DW S+ PD +L  ++  L  K+  +TSVLS RW+ LW     LD D          D+Q+
Sbjct: 18  DWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNT--------DFQE 69

Query: 82  -SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVRNFE-LDL 136
            + ++S+V+  L+ +  S + +F + +  D ++  +   I  W+NT + + V++ + LD 
Sbjct: 70  FNTFLSFVDSFLDFNSESFLQKFILKYDCDDEYDPDIFLIGRWINTIVTRKVQHIDVLDD 129

Query: 137 SPGTYDNYYEIPQECY--KNLQS--GCGLS-------GIKSLRSLTLCAVNVTGEV-VEF 184
           S G+++   ++P   Y  ++L S   CGL+        + SL+ + L       ++ +E 
Sbjct: 130 SYGSWE--VQLPSSIYTCESLVSLKLCGLTLASPEFVSLPSLKVMDLIITKFADDMGLET 187

Query: 185 FIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG- 243
            I  CP+LE+L I +S                     FC  I+ + + + +LL F ++  
Sbjct: 188 LITKCPVLESLTIERS---------------------FCDEIEVLRVRSQSLLRFTHVAD 226

Query: 244 ------QDINLHVGSLPQL-------------------------VDVVFHVTPM------ 266
                 +D+ + + + P+L                         +D+VF+++ +      
Sbjct: 227 SDEGVVEDLVVSIDA-PKLEYLRLSDHRVASFILNKPGKLVKADIDIVFNLSSVNKFNPD 285

Query: 267 -VQKMHCIGSIVSYLPQLKTLEL-DGCNEVFAQFSQRE-FPKLMNLNISFTAANQETLLG 323
            + K   I + +  +  +K + +     EV   FS+ E  P   NL++            
Sbjct: 286 DLPKRTMIRNFLLGISTIKDMIIFSSTLEVIYDFSRCERLPLFRNLSVLCVEFYGYMWEM 345

Query: 324 LSFIMKACPFLEKLVLQ---IWNNGRRI---GKKRHQISKHSHQHLKLVELQGFNGREID 377
           L   +++CP L+ LV++       G  I   G +R      S +++K+   +   G  ++
Sbjct: 346 LPIFLESCPNLKTLVVKSASYQEKGENIILPGPRRFL---SSLEYVKIE--RPLKGEAME 400

Query: 378 FELAFYVFENATMLEKMIIKPSGSRKR 404
            +L  Y+ EN+T+L+K+ +    S K+
Sbjct: 401 MKLVSYLLENSTILKKLTLCLDDSVKK 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M190|FBL49_ARATH Putative F-box/LRR-repeat protein At3g42770 OS=Arabidopsis thaliana GN=At3g42770 PE=4 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 170/388 (43%), Gaps = 43/388 (11%)

Query: 27  FPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQ----QS 82
            PD++L+ I+S L  KEA  TS+LS RW+ L+T + +LDFD  +   S    +     Q 
Sbjct: 4   LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDNSLLLQSKKRKWNMRNIQK 63

Query: 83  KYISWVNKVLELHRGSRINQFRICFRL---DAKHKCNITNWVNTAIAKNVRNFELDLSPG 139
            ++ +V+  L L  G  I  F + F+    D   + ++  W+  A+   V    L +   
Sbjct: 64  SFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDVNRWICNALEHGVSELHLRID-- 121

Query: 140 TYDNYYEIPQECYKN--------LQSGC--GLSGIKSLRSLTLCAVN-VTGEVVEF--FI 186
            Y     +P E + +        +   C   +    SL SL +  ++ +  EV +F  F+
Sbjct: 122 -YTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVPNCISLPSLKVLFLDSIWFEVPQFLIFL 180

Query: 187 HNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC------YSIKEIEI-SAPNLLSF 239
             CP LE+L I Q P  + +    SS  +K L + +       Y +K     S  +L   
Sbjct: 181 TACPALEDLTIYQKPHSVGMPYHISSKTIKRLSVTYTCGYFVDYGLKLFNTPSVVDLYYS 240

Query: 240 KYIGQDI-NLHVGSLPQ-LVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN-EVFA 296
            Y+     ++++ SLP+  +D+ F    +      +  ++S +  +KTL L     +V  
Sbjct: 241 DYVRHKYPHMNLDSLPKATLDIHF----LDDNAANVTELLSGIRNVKTLHLTSSTVKVIL 296

Query: 297 QFSQREFPKLMNL-NISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI 355
              + E P   NL N+ F+   ++    L  +++ CP L  LVL   +    +G +    
Sbjct: 297 LCCKGEIPMFENLINLKFSGKTRQWKFLLPLLLEICPNLTTLVLSGLDQNWFVGFR---- 352

Query: 356 SKHSHQHLKLVELQGFNGREIDFELAFY 383
               +  +K++ +  + G E + +L  Y
Sbjct: 353 -TPPNNQVKMLSIMQYQGSERELKLISY 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 178/419 (42%), Gaps = 53/419 (12%)

Query: 22  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
           D  S  PD++L+ I+S +  K A  TS+LS RW++LW + T L F  K         Y +
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK--------RYSE 53

Query: 82  SKYIS---WVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSP 138
           S++     ++++ L LHR   I  FR+          +I  WV  A+++ +R  EL +  
Sbjct: 54  SEFKRLQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIR--ELKIYS 111

Query: 139 GTYDNYYEI-PQECYK-------NLQSGCGLS-----GIKSLRSLTLCAVNVTGE-VVEF 184
             Y     I P   Y         L  G  L       + SL++L L  V    +  ++ 
Sbjct: 112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQR 171

Query: 185 FIHNCPLLENLRITQS--PDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 242
            + NCP+LE+L +  S   ++  L V+  S+    L      S +E  I  P+LLSF+ +
Sbjct: 172 LLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTP---SSREFVIDTPSLLSFQLV 228

Query: 243 GQDINLH---VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS 299
            ++ N H   + ++P+L +   +V P       IGSI S + +L      G  E F  F+
Sbjct: 229 DRNDNSHTFLIENMPKLREAYINV-PFADIKSLIGSITS-VKRLAISSEVGYGEGFI-FN 285

Query: 300 QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHS 359
             E           T  N+ +   L + +K  P L +L+L    +               
Sbjct: 286 HLE---------ELTLWNKYSSNLLVWFLKNSPNLRELMLVSETDDHENLGMLSWNQPSI 336

Query: 360 HQHLKLVELQGFN-----GREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNM 413
                L  LQ F      GR  D ++A Y+ +NA  L    IK S +R  T L+  T +
Sbjct: 337 VPECMLSSLQKFTWFKYLGRPQDRDIAVYILKNACRLRTATIK-SDTRLFTKLEMITEL 394

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 182/429 (42%), Gaps = 58/429 (13%)

Query: 22  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
           DW S  P+ +L  ++  L  K+  ++SVLSSRW+ LW +    +      ++     Y  
Sbjct: 18  DWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCDFHVRNTFSYDH 77

Query: 82  SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVRNFELDLSP 138
           + ++ +V+  +  +  S +  FR+ +      +     I  W+N+ +++ V+   L +  
Sbjct: 78  NTFLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLALIRRWINSVVSRKVK--YLGVLD 135

Query: 139 GTYDNY-YEIPQECYKN------LQSGCGLSGIK-----SLRSLTLCAVNVTGEV-VEFF 185
            + DNY +E+P   Y           G  L+  K     SL+ L L  V     + +E  
Sbjct: 136 DSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVSLPSLKELHLSIVKFADHMALETL 195

Query: 186 IHNCPLLENLRI------------TQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISA 233
           I  CP+LENL I             +S  LLS   V  +  +   D+        + I A
Sbjct: 196 ISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFTHVADTDEMLNEDLV-------VAIDA 248

Query: 234 PNL----LSFKYIGQDINLHVGSLPQL-VDVVFHVTPM-------VQKMHCIGSIVSYLP 281
           P L    LS   I   I   + SL +  +D VF++          + K + I   +  + 
Sbjct: 249 PKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFNPNDLNKRNMIRDFLVGIS 308

Query: 282 QLKTLELDGCN-EVFAQFSQRE----FPKLMNLNISFTAANQETLLGLSFIMKACPFLEK 336
            +KTL +     EV   +S+ E    F  L +L + F     E    L   +++CP L+ 
Sbjct: 309 SIKTLIIASSTLEVIYDYSRCEPLPLFRNLSSLRVDFYGYKWEM---LPIFLESCPNLKS 365

Query: 337 LVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQ-GFNGREIDFELAFYVFENATMLEKMI 395
           LV+   N   + G     + +     L+ V+++    G  ++ +L  Y+ EN+T+L+K+ 
Sbjct: 366 LVVGSANYREKEGINILSVPRGFLSSLEYVKIERPLKGEAMEMKLVSYLLENSTILKKLT 425

Query: 396 IKPSGSRKR 404
           +    S K+
Sbjct: 426 LCLDDSIKK 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 191/433 (44%), Gaps = 61/433 (14%)

Query: 14  EKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYM 73
           ++ + + ED  S  P+ ++  I+  +  K+  ++SVLS RW+ LW +   L+    V+Y 
Sbjct: 8   KRARRSEEDRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLN----VEYN 63

Query: 74  SFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKC--NITNWVNTAIAKNVRN 131
            F  DY    ++S+V++ L L R S    FR+ +  D + +   N+  W+N  + + ++ 
Sbjct: 64  QFL-DYNA--FVSFVDRFLALDRESCFQSFRLRYDCDEEERTISNVKRWINIVVDQKLK- 119

Query: 132 FELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGE---------- 180
             LD+   T+ N   +IP   Y            +SL SL LC V +             
Sbjct: 120 -VLDVLDYTWGNEEVQIPPSVY----------TCESLVSLKLCNVILPNPKVISLPLVKV 168

Query: 181 ------------VVEFFIHNCPLLENLRITQSP--DLLSLKVVGSSIPLKCLDIQFC--- 223
                       V+E  I +C  LE+L I++S   D+  L+V   S+ L    I  C   
Sbjct: 169 IELDIVKFSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSL-LSFKHIGNCSDG 227

Query: 224 YSIKEIEISAPNL----LSFKYIGQDINLHVGSLPQL-VDVVFHVTPMVQ-----KMHCI 273
           +   E+ I AP L    +S     +    + GSL +  ++++F++  +       K   I
Sbjct: 228 WDELEVAIDAPKLEYLNISDHSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRPKRKMI 287

Query: 274 GSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPF 333
              ++ +  +K L +             E P   NL+         TL  LS  +++CP 
Sbjct: 288 QDFLAEISSVKKLFISSHTLEVIHDLGCELPLFRNLSSLHIDFEDHTLKMLSTFLQSCPN 347

Query: 334 LEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQ-GFNGREIDFELAFYVFENATMLE 392
           ++ LV++  ++ +  G +   I +     L+ V+++    G     ++  Y+ EN+ +L+
Sbjct: 348 VKSLVVEFKDSSKEDGDRVLSIPRCFFTTLEYVKIERPITGEARGMKVVSYILENSPILK 407

Query: 393 KMIIKPSGSRKRT 405
           K+ +  + SR+++
Sbjct: 408 KLNLCLNSSREKS 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 32/230 (13%)

Query: 22  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
           D+ +  PDDIL HI+S +    A RTSVLS RW+++W  T  LD   K   M        
Sbjct: 27  DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAM-------- 78

Query: 82  SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTY 141
                  N+ L  +    I  F++   L++     + +W+  A+++NV+N  + +   TY
Sbjct: 79  -------NQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTY 131

Query: 142 DNYYEIPQECYK--------------NLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIH 187
              Y  P   Y               ++   C +S  KSLR+LTL    +  E +   + 
Sbjct: 132 SKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSW-KSLRNLTLRFCQIPDESIHNILS 190

Query: 188 NCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY-SIKEIEISAPNL 236
            CP+LE+L +  +  LL    +  S  L+ LDI   Y     + I AP++
Sbjct: 191 GCPILESLTL-DTCRLLERLDLSKSPNLRRLDINQQYRRTGPVAIVAPHI 239

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
449440973	475	PREDICTED: putative FBD-associated F-box	0.955	0.867	0.336	3e-57
255540581	457	ubiquitin-protein ligase, putative [Rici	0.911	0.859	0.362	2e-56
255544812	464	ubiquitin-protein ligase, putative [Rici	0.941	0.875	0.338	2e-54
302142991	402	unnamed protein product [Vitis vinifera]	0.742	0.796	0.381	6e-51
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.823	0.794	0.322	6e-41
297736820	487	unnamed protein product [Vitis vinifera]	0.937	0.829	0.276	3e-33
356544606	444	PREDICTED: putative F-box protein At3g58	0.928	0.900	0.278	5e-33
147865783	1789	hypothetical protein VITISV_020815 [Viti	0.937	0.225	0.274	1e-32
242064210	494	hypothetical protein SORBIDRAFT_04g00522	0.835	0.728	0.281	2e-32
260446994	504	OO_Ba0005L10-OO_Ba0081K17.27 [Oryza offi	0.839	0.718	0.289	8e-32

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/446 (33%), Positives = 243/446 (54%), Gaps = 34/446 (7%)

Query: 11  DAPEKQK-ENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFD-- 67
           + PE ++ +   D  S  P DIL+ I+S L LKEAARTS LS +W+ LW+F   L+FD  
Sbjct: 33  EEPENERCDRSVDSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIPCLNFDAH 92

Query: 68  KKVKYMSFPPD---YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTA 124
           KK+  + F  +    ++ +++ WVN+V++ ++GS +   RI F LD+  +C++  WV  A
Sbjct: 93  KKLLDLQFTDENLKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQFA 152

Query: 125 IAKNVRNFELDL---------SPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAV 175
           +   ++ FEL+L         SP ++    + P+E +         S   SL++L L AV
Sbjct: 153 MQWKLKMFELNLSDSYDSGIYSPCSFPQLSDGPKENFPRFM----FSNSSSLKTLKLIAV 208

Query: 176 NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPN 235
           NV GE +E F+ N PLLE L +  S  LLSL+VVG+S+ L+ L++  C  ++ +E+SAPN
Sbjct: 209 NVGGEALECFLTNSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPN 268

Query: 236 LLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVF 295
           L SFKY+G  +++ + + P+L++  F     V+ +     + SY  QL+ L LD   +  
Sbjct: 269 LESFKYVGPWLSMPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDLEVDFM 328

Query: 296 AQFSQREFPKLMN---LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKR 352
                R++P L N   L +   A    +L+G + ++KA P L K  L++        +  
Sbjct: 329 ENQGFRKWPILANLKELKLIVIAEGHSSLIGFTSLIKASPSLLKFTLKLDYLDMFEQRPL 388

Query: 353 HQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTL----- 407
            ++ K  HQ++K+VEL GF G+ ID EL  Y  +NA  LE++I      +   T+     
Sbjct: 389 RKVKKFPHQYIKVVELAGFVGKPIDLELVQYFHKNAVALEEIIFDTRKPKDMGTIFEKKQ 448

Query: 408 -------KNSTNMLKAKLPRGVKLTV 426
                  +   N L++KL  GVK+T+
Sbjct: 449 NAETIAGRECANGLRSKLFSGVKVTI 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/425 (36%), Positives = 242/425 (56%), Gaps = 32/425 (7%)

Query: 1   MTKKARHISEDAPEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTF 60
           M K+ +H S  + E+ KE   D  S  P++IL  I+S LT +EA+RTSVLS RW+ LWT 
Sbjct: 1   MAKRFQHSSVTSVEEAKE---DRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTL 57

Query: 61  TTSLDFD-------KKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKH 113
           T+SL+FD       KK+    F    +++++  WV +VLE+++ S +++F + F L    
Sbjct: 58  TSSLNFDCTKIALGKKLDD-RFALRSERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNS 116

Query: 114 KCNITNWVNTAIAKNVRNFELDLSPGT------YDNYYEIPQECYKNLQSGCGLSGIKSL 167
           + ++  W+N A++K ++  E+ L+P +      +D  Y  P +CY  ++   GLS I SL
Sbjct: 117 RRSLDKWMNFAMSKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSL 176

Query: 168 RSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIK 227
           RSL L  VN+TGEVVE F+ NCPLLE L +  +  L SLKV  SS+ LK L+I  CY +K
Sbjct: 177 RSLCLRYVNMTGEVVEHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLK 236

Query: 228 EIEISAPNLLSF------KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLP 281
             EI APNL++       +Y G+ + L    LP L+D+      +       G+  S   
Sbjct: 237 NFEICAPNLVTILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFS 296

Query: 282 QLKTLELDGCNEVFAQFSQ-----REFPKLMNL-NISF-TAANQETLLGLSFIMKACPFL 334
           QL TL++    EV  Q  Q      +FP+L NL ++ F T  +  ++L +  ++K+ P L
Sbjct: 297 QLMTLKI-VVTEVRMQECQVRLKFPKFPELTNLRHLGFKTEYDICSILAVRLLIKSSPLL 355

Query: 335 EKLVLQIWNNGRRIGKKRHQISKH-SHQHLKLVELQGFNGREIDFELAFYVFENATMLEK 393
            K  L++ +  R   K+R +   +  HQ+LK+VE+ GF G  +++E   +  +NA+ LEK
Sbjct: 356 NKFTLELADGSRCQIKRRVRTGINCPHQNLKVVEIVGFIGGAVEYEFIMFFLDNASALEK 415

Query: 394 MIIKP 398
           +I++P
Sbjct: 416 IILRP 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  219 bits (559), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/458 (33%), Positives = 235/458 (51%), Gaps = 52/458 (11%)

Query: 8   ISEDAPEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTS-LDF 66
           +  D    +  N+ +  S+ P+D+L++I+S LT+KEAARTS+LS+RW++LWT+ T  +DF
Sbjct: 19  LPSDENRARNGNISEHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDF 78

Query: 67  DKKVK--YM-----SFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITN 119
           D  +   Y+     S   D ++  ++SWVN+VL  H G  +   RICF LD+     I +
Sbjct: 79  DASLTMWYLQLGLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDS 138

Query: 120 WVNTAIAKNVRNFELDLS---PGT-YDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAV 175
           W+  A+ K V+  E+DL+   P       Y  P     +       S   SL++L L  V
Sbjct: 139 WITIAMQKRVKRLEIDLTNIEPSIKTTGSYAFPSGLLND-------SSFSSLKTLQLNMV 191

Query: 176 NVTGEVVEFFIHN-CPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAP 234
           +VTGE ++  + + CPLLE L I  S  L+SLKV GSS+ LK L++  C ++K +EI+A 
Sbjct: 192 DVTGEALQHLLLSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAA 251

Query: 235 NLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNE 293
           +L+SFKY G  I L   S+P LVD  F   P  Q  +  +     Y+ QL+TL  D    
Sbjct: 252 SLVSFKYYGPLIGLPFKSVPNLVDASFG-GPFCQLTIENLYQFSLYILQLETLRFD---- 306

Query: 294 VFAQFSQREFP---------KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN- 343
           V + +  REFP         K + +  + +A        LS ++K CP L +  L++ + 
Sbjct: 307 VGSAYLMREFPTNFPILSNVKHLEVTTAVSAVAHCLFPCLS-LLKGCPLLHRFTLKVISC 365

Query: 344 NGRRIGKKRHQISK-HSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSG-- 400
               + +   ++ + HSH  LK+VE+ GF G   + EL  Y   NA +L+ +II P    
Sbjct: 366 ESTLVCRASQKVPEDHSHPCLKVVEVLGFQGNAAEVELVLYFLRNAAVLKNLIISPCAPC 425

Query: 401 --------SRKRTTLKNSTNM----LKAKLPRGVKLTV 426
                     K T L  S       L A++P GV   V
Sbjct: 426 YLRSPSQLKFKETELYQSAKQHAVELGARVPPGVDFVV 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 201/362 (55%), Gaps = 42/362 (11%)

Query: 21  EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYM-----SF 75
           ED  S  PD+ILI I+S LTL+EAA TSVLS RW+YLWT+T+ L+FD  V  +     SF
Sbjct: 21  EDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNKIVRRSHSF 80

Query: 76  PPDYQQS------KYISWVNKVLELHRGSR-INQFRICFRLDAKHKCNITNWVNTAIAKN 128
                        KYI WV+KVL  +RG R +++FR+CF L  + + +I  W   A++KN
Sbjct: 81  ALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFAMSKN 140

Query: 129 VRNFELDL----------SP-----GTYDNYYEIPQECY--KNLQSGCGL-SGIKSLRSL 170
           V+N E D            P       + N+Y+ P      +  +   G+  G KSL++L
Sbjct: 141 VKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKSLKTL 200

Query: 171 TLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE 230
           +L ++NV+ E VE+F+ NCPLLE L +  S  L++L+V G SI L+ L+I  C SI+ IE
Sbjct: 201 SLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSIQTIE 260

Query: 231 ISAPNLLSFKYIGQ---DI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLK 284
           I   NL+SF Y G+   D+   N+H+ + P LV+V+  V  +    + +  + S + QL+
Sbjct: 261 ICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSSCVHQLQ 320

Query: 285 TLELDGCNEVFAQFSQRE-FPKLMNLN----ISFTAANQETLLGLSFIMKACPFLEKLVL 339
            L+L   +  F + S+    PKL NL       F    +  LLG   ++K CP LE LVL
Sbjct: 321 ILQLT-VDHFFPERSRAYLLPKLRNLKQLKLTVFVGCPENCLLGFVAMLKKCPHLESLVL 379

Query: 340 QI 341
           Q+
Sbjct: 380 QV 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 207/409 (50%), Gaps = 54/409 (13%)

Query: 16  QKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT-FTTSLDFD------- 67
           +K+  ED  ++ PD I I+I++ L +KEAARTS+LS +WK LWT F+ +L+F+       
Sbjct: 19  EKDYEEDIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFSGTLEFEGSPIMKD 78

Query: 68  -----KKVK------YMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN 116
                KKV        M    D ++  Y SW+N++L   + S +   +  F +  K+  +
Sbjct: 79  MIKDLKKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGLKFWFPM--KNVSD 136

Query: 117 ITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVN 176
           I NW++ A+ K V+  EL      +   Y +P   +K       +    SL  L + ++ 
Sbjct: 137 IDNWIHFAVQKKVQKLELYFG---HTIVYVLPLHIFK-------VERFNSLCVLRMKSIT 186

Query: 177 VTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL 236
           VT E++E+ + NC LLE L +  S    ++KV GSS+ LKCL++  C+ + +IEI A  L
Sbjct: 187 VTDEMLEYLMCNCQLLETLSLVDSRVPKTMKVSGSSLKLKCLELVRCWELTKIEIFAEKL 246

Query: 237 LSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIV-----SYLPQLKTLELD-- 289
           +SFKY G  +     S+P L +  F            GS V     S+LPQ+K L+LD  
Sbjct: 247 VSFKYYGSHLETEFKSVPCLEEASFG-----------GSFVEFVRESFLPQIKVLKLDIT 295

Query: 290 -GCNEVFAQFSQREFPKLMNL-NISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRR 347
               EV    SQ   PKL NL ++   A   + +     ++KA P L +L +++ N  + 
Sbjct: 296 QNSPEVIYWLSQ--LPKLKNLKHLELVACADDGISACVMLLKASPSLWRLKIKMLNT-KP 352

Query: 348 IGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII 396
                H+ +   H +LK +EL GF G   + EL  Y+ EN   L+K+ I
Sbjct: 353 TYITEHKFTMECHYNLKELELVGFCGAACEVELVMYILENTDELQKITI 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 210/474 (44%), Gaps = 70/474 (14%)

Query: 21  EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKK--------VKY 72
           EDW    PDDIL  IIS L LKEA RT +LS RW+ +WT  + L FD             
Sbjct: 15  EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSTS 74

Query: 73  MS-----FPPDYQQSKYISWVNKVLELH-RGSRINQFRICFRLDAKHKCNITNWVNTAIA 126
           MS          Q SK++  V++ +    +G +IN F I F L  +   +I  W+  A+ 
Sbjct: 75  MSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWITCAVM 134

Query: 127 KNVRNFELDLS------------PGTYDNYYEIPQECY---------KNLQ-SGCGLSGI 164
           K V N +LDLS              T    YE P   +         K+L+ + C LS +
Sbjct: 135 KGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLSAL 194

Query: 165 KSLRSLT------LCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCL 218
            S  +LT      L  VN++ + ++  +  C  LE L +     L++L     ++ LK L
Sbjct: 195 PSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSALNLQLKFL 254

Query: 219 DIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQK----MHCIG 274
            I+ C+ ++ IEI A +L++FKY G   +    ++P+L            +    M+ + 
Sbjct: 255 SIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALT 314

Query: 275 SIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN----ISFTAANQETLLGLSFIMKA 330
                LPQL+TL+L     +         P   N+       F   + + L  + +I+KA
Sbjct: 315 RFPQDLPQLETLKLLSVLTLKKLQLPENGPTFTNVKQFELTVFPFDDDDDLSWIGYILKA 374

Query: 331 CPFLEKLVLQIWNNGRRIGKKRHQISKH----SHQHLKLVELQGFNGREIDFELAFYVFE 386
            P L+KL L +++      K+  +I +      H+HL ++++ GF G + + +L  Y+  
Sbjct: 375 FPLLQKLELNLFSPS--FTKQPKEIERFLPECPHRHLSILQINGFYGNQHEVDLLKYLLH 432

Query: 387 NATMLEKMIIKPSGSRK--------------RTTLKNSTNMLKAKLPRGVKLTV 426
           N   LE +++ PS                  R  L+ +   L A LPR V+L +
Sbjct: 433 NLVALELLVVAPSKKGGEYISWRSQAEHLWCRARLQGAYEWLLAVLPRAVRLEI 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 217/446 (48%), Gaps = 46/446 (10%)

Query: 18  ENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTS-LDFDKKVKYMSFP 76
           EN  D  S  PDDIL  I+S LTLKEAARTSVL+++W+Y WTF +  LDFD  ++     
Sbjct: 7   ENNRDIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLRNFHLR 66

Query: 77  PD------------YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTA 124
            +            Y+  ++++ +  V++  + S +   RIC  +D      +  WV  A
Sbjct: 67  REHVGILTKCNVFVYEWERFMTRMANVMKSLKSSSLQGLRIC--MDLGDPWRVAEWVKYA 124

Query: 125 IAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEF 184
             K+V+  +LD S      +YEI      N+    G   +KSL +L L +V+V+GEV+E 
Sbjct: 125 AEKHVQTLDLDFSYHFSVPFYEISLTIVHNVFPSRGYE-MKSLCNLRLSSVDVSGEVIEG 183

Query: 185 FIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 244
            + +CPLLE++ + +S  L+ LKV G ++ LK L++  C  I +++I A NL++F+Y G+
Sbjct: 184 LLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVEC-RIMDLDIYAVNLVTFRYQGK 242

Query: 245 DINLHVGSLPQLVDVVF------HVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF 298
                  ++P LV+  F      ++   + ++   G ++    Q+  L+L+  ++ +  F
Sbjct: 243 YGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFYGVLL----QINVLKLE-LSKPYPGF 297

Query: 299 SQR--EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS 356
            +    F  +  L I     +   L     ++ + P +  L ++   N   + ++  + +
Sbjct: 298 LEGLPVFDNVGQLEIRIPHRSGAALDHHVSLLSSFPSVRVLKIKFQRNDLSVVEENWKAN 357

Query: 357 -KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGS-------------- 401
            +H + +L+ +E+ GF       EL   +FE A  L  +++ P  S              
Sbjct: 358 LEHEYPNLRELEVSGFRRDPSQMELLISIFEKAPNLNSVVVDPLSSIHVDRSPDVKARYR 417

Query: 402 -RKRTTLKNSTNMLKAKLPRGVKLTV 426
             +R T K   + LK  LP   +L V
Sbjct: 418 EMRRETTKWLADALKPHLPPLTQLIV 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865783|emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 209/474 (44%), Gaps = 70/474 (14%)

Query: 21   EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKK--------VKY 72
            EDW    PDDIL  IIS L LKEA RT +LS RW+ +WT  + L FD             
Sbjct: 1317 EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSXS 1376

Query: 73   MS-----FPPDYQQSKYISWVNKVLELH-RGSRINQFRICFRLDAKHKCNITNWVNTAIA 126
            MS          Q  K++  V++ +    +G +IN F I F L  +   +I  W+  A+ 
Sbjct: 1377 MSGNQPELNSQMQSXKFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSHIDQWITCAVM 1436

Query: 127  KNVRNFELDLS------------PGTYDNYYEIPQECY---------KNLQ-SGCGLSGI 164
            K V N +LDLS              T    YE P   +         K+L+ + C LS +
Sbjct: 1437 KGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLSAL 1496

Query: 165  KSLRSLT------LCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCL 218
             S  +LT      L  VN++ + ++  +  C  LE L +     L++L     ++ LK L
Sbjct: 1497 PSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLERLSLCVCNGLVNLSFSALNLQLKFL 1556

Query: 219  DIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQK----MHCIG 274
             I+ C+ ++ IEI A +L++FKY G   +    ++P+L            +    M+ + 
Sbjct: 1557 SIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALT 1616

Query: 275  SIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN----ISFTAANQETLLGLSFIMKA 330
                 LPQL+TL+L     +         P   N+       F   + + L  + +I+KA
Sbjct: 1617 RFPQDLPQLETLKLLSVLTLKKLQLPENGPTFTNIKQFELTVFPFDDDDDLSWIGYILKA 1676

Query: 331  CPFLEKLVLQIWNNGRRIGKKRHQISKH----SHQHLKLVELQGFNGREIDFELAFYVFE 386
             P L+KL L +++      K+  +I +      H+HL ++++ GF G + + +L  Y+  
Sbjct: 1677 FPLLQKLELNLFSPS--FTKQPKEIERFLPECPHRHLSILQINGFYGNQHEVDLLKYLLH 1734

Query: 387  NATMLEKMIIKPSGSRK--------------RTTLKNSTNMLKAKLPRGVKLTV 426
            N   LE +++ PS                  R  L+ +   L A LPR V+L +
Sbjct: 1735 NLVALELLVVAPSKKGGEYISWRSQAEHLWCRARLQGAYEWLLAVLPRAVRLEI 1788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242064210|ref|XP_002453394.1| hypothetical protein SORBIDRAFT_04g005220 [Sorghum bicolor] gi|241933225|gb|EES06370.1| hypothetical protein SORBIDRAFT_04g005220 [Sorghum bicolor]

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 206/426 (48%), Gaps = 66/426 (15%)

Query: 30  DILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDK-KVKYMSFPPD------YQQS 82
           DIL  I+S L + +A RTSVLS + K++W   T+L+FD   ++   F P        + +
Sbjct: 5   DILSTILSLLPINDAVRTSVLSRKLKHVWRSHTNLNFDTGTMRKGYFRPSKGYYSGLKDN 64

Query: 83  KYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYD 142
           ++++ V+ V++ H G+ +   +I FRL +KH  +I +WV+ AIA   + F ++LS G+  
Sbjct: 65  EFVTRVDTVVQQHNGTGVEHMKIRFRLHSKHADHIDSWVSVAIASKTKEFVINLSGGSRG 124

Query: 143 NY---------------YEIPQECYK---------------NLQSGCGLSGIKSLRSLTL 172
            +               Y  P + +                +LQ      G  +L+SLTL
Sbjct: 125 IFFLRGGRIRRMVGEEPYSFPSQFFSPNNCSHLRCLELWSVSLQLPSDFKGCLNLKSLTL 184

Query: 173 CAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEIS 232
             V++T E V+  +  C LLE L I+    + S++++     L  L +  C  ++EIE++
Sbjct: 185 VDVSITDEDVQCILSTCNLLEFLEISYCSMVTSIRMLHPLDRLMHLVVDICRKLQEIELN 244

Query: 233 APNLLSFKYIGQDINLHVGSLPQL--VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDG 290
             +L +F+Y G+ + L   S  +L  ++VVF +T      + +    S  P+L+TL L  
Sbjct: 245 C-SLTTFQYSGRTVPLKFASTSRLTNINVVF-LTDQSALSYMVTGFPSTSPRLETLTL-Y 301

Query: 291 CNE---VFAQFSQREFPKLMNLNISFTAANQET----LLGLSFIMKACPFLEKLVLQIW- 342
           C E           +F  L +L +    A + T    +L  +++++  PF+EK+ L++W 
Sbjct: 302 CYEHERTLVPEGPFKFTCLRDLRLDLVFAGKGTRNVDVLDYAYLLEIAPFMEKMELRMWI 361

Query: 343 ----------NNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLE 392
                     +   RIG        H H HLK V + GF G +   ELA ++  +  +LE
Sbjct: 362 RWHHQPYCKEDGELRIGL------PHQHAHLKYVRISGFFGHKDQVELALHILGSCMVLE 415

Query: 393 KMIIKP 398
           KM+I P
Sbjct: 416 KMVITP 421

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260446994|emb|CBG76276.1| OO_Ba0005L10-OO_Ba0081K17.27 [Oryza officinalis]

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 197/428 (46%), Gaps = 66/428 (15%)

Query: 30  DILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDK----KVKYMSFPP-------D 78
           DIL  I+SGL + +A RTSVLS +WKY+W   T+L  +K    K   ++  P       D
Sbjct: 22  DILSKILSGLPVNDAIRTSVLSRKWKYVWCSHTNLTLNKGTMRKPYVLTLTPYRWRWLRD 81

Query: 79  YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLS- 137
           Y+   +I+ V+ VL  H G  + +  I FRL +KH  +I  WVN  IA   +   ++LS 
Sbjct: 82  YE---FITRVDAVLRQHSGMGVQRMEIKFRLHSKHADHIDRWVNFVIASKTKELVINLSG 138

Query: 138 -----------------------------PGTYDNYYEIPQECYKNLQSGCGLSGIKSLR 168
                                          +Y +Y    +    +LQ      G  +L+
Sbjct: 139 HDKGSFFTELSQGIRIIKEPPYNLPSQLLSPSYGSYLRCLELTTVSLQLPADFKGFLNLK 198

Query: 169 SLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE 228
            L+L  +++T E V+  +  C LLE L I+    + S++++     LK L +  C ++KE
Sbjct: 199 ILSLVDMSITDEDVQCMLSKCNLLEFLDISYCRMVTSIRMLHPLDRLKHLVVDNCRNLKE 258

Query: 229 IEIS-APNLLSFKYIGQDINLHVGSLPQL--VDVVFHVTPMVQKMHCIGSIVSYLPQLKT 285
           IE++ +P  L F   G  + L   S  +L  +++VF +T      + I    S LP+L+T
Sbjct: 259 IELNCSPTTLKFS--GTMVPLIFASTSRLTNINIVF-ITYQSALSYIITGFPSTLPRLET 315

Query: 286 LELDGCNE---VFAQFSQREFPKLMNLNISFTAANQE-----TLLGLSFIMKACPFLEKL 337
           L L  C E           +F  L NL +    +  E      +L  ++I++  PF+E L
Sbjct: 316 LTLH-CAERERTIVPEGPFKFTYLRNLRLELVLSGHENTRKTNVLDYAYILEIAPFMETL 374

Query: 338 VLQIWNNGRRIGKKRHQISK-------HSHQHLKLVELQGFNGREIDFELAFYVFENATM 390
            L +W    R    R +  +       H H HLK V + GF G +   ELA ++  ++ +
Sbjct: 375 ELSMWAMNCRHRPYREEDGELRIVGPPHQHAHLKSVRISGFFGHKDQVELALHILRSSVV 434

Query: 391 LEKMIIKP 398
           LEKM+I P
Sbjct: 435 LEKMVITP 442

Source: Oryza officinalis

Species: Oryza officinalis

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.837	0.813	0.265	1.7e-17
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.856	0.902	0.274	8.2e-17
TAIR|locus:2201522	456	AT1G66300 "AT1G66300" [Arabido	0.422	0.399	0.254	1.9e-15
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.410	0.386	0.261	3.5e-15
TAIR|locus:2008276	435	AT1G51370 "AT1G51370" [Arabido	0.812	0.804	0.271	4.3e-15
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.575	0.552	0.267	2.2e-14
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.501	0.449	0.295	2.3e-14
TAIR|locus:2162454	437	AT5G22700 "AT5G22700" [Arabido	0.424	0.418	0.262	5.5e-14
TAIR|locus:2155327	438	AT5G44950 "AT5G44950" [Arabido	0.524	0.515	0.291	7.4e-14
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.559	0.579	0.270	8.8e-14

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 108/407 (26%), Positives = 194/407 (47%)

Query:    21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQ 80
             E+  S+ PD ++  I+S L+ K+A RTS+LS+RW+ LW     LDFD + +  SF     
Sbjct:    17 EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSR-ELRSF----- 70

Query:    81 QSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT 140
              S+++S+      LH+ S I + R+C   D      +T+W++      +++  +D+S  T
Sbjct:    71 -SEFVSFAGSFFYLHKDSYIQKLRVCI-YDLAGNYYLTSWIDLVTRHRIQH--IDISVFT 126

Query:   141 YDNYYEIPQECYK-----NLQ-SGCGLSGIK-----SLRSLTLCAVNVTGEVVEFFIHNC 189
                +  IP   Y      +L+ S   +  ++      L+ L L  VN T E     I +C
Sbjct:   127 CSGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISC 186

Query:   190 -PLLENLRITQSPDLLSLKVVG-SSIPLKCLDIQFCYSIKE-IEISAPNL--LSFK-YIG 243
              P+LE L I +S +  ++K++   S  LK ++I   +     + I  P L  LS K +  
Sbjct:   187 SPVLEELTIVKSSED-NVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSI 245

Query:   244 QDIN-LHVGSLPQL-VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLEL-DGC-NEVFAQFS 299
             + I  +++G   ++ +DV       +          + + ++++L +  G   ++F    
Sbjct:   246 KSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYME 305

Query:   300 Q---REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS 356
                 ++F  L  L+   + +N E LL L   +K+CP LE L L++ +  +   KK   +S
Sbjct:   306 LEPLQQFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLVDYEKN--KKEEVMS 360

Query:   357 KHSH-----QHLKLVELQG-FNGREIDFELAFYVFENATMLEKMIIK 397
                        LK V+L+    G   + ++A Y  EN+T+LEK+ +K
Sbjct:   361 STVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLK 407

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 8.2e-17, P = 8.2e-17
 Identities = 114/416 (27%), Positives = 186/416 (44%)

Query:    22 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
             D  S  PD++L+ I+S +  K A  TS+LS RW++LW + T L F  K +Y     ++++
Sbjct:     2 DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK-RYSE--SEFKR 58

Query:    82 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKC-NITNWVNTAIAKNVRNFELDLSPGT 140
              +   ++++ L LHR   I  FR+    D+  K  +I  WV  A+++ +R  EL +    
Sbjct:    59 LQ--CFLDRNLPLHRAPVIESFRLVLS-DSHFKPEDIRMWVVVAVSRYIR--ELKIYSSH 113

Query:   141 YDNYYEI-PQECYK-------NLQSGCGLSG-----IKSLRSLTLCAVNVTGE-VVEFFI 186
             Y     I P   Y         L  G  L       + SL++L L  V    +  ++  +
Sbjct:   114 YGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQRLL 173

Query:   187 HNCPLLENLRITQS--PDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 244
              NCP+LE+L +  S   ++  L V+  S+    L      S +E  I  P+LLSF+ + +
Sbjct:   174 CNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTP---SSREFVIDTPSLLSFQLVDR 230

Query:   245 DINLH---VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR 301
             + N H   + ++P+L +   +V P       IGSI S + +L      G  E F  F+  
Sbjct:   231 NDNSHTFLIENMPKLREAYINV-PFADIKSLIGSITS-VKRLAISSEVGYGEGFI-FNHL 287

Query:   302 EFPKLMNLNIS----FTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK 357
             E   L N   S    +   N   L  L  + +     E L +  WN    + +    +S 
Sbjct:   288 EELTLWNKYSSNLLVWFLKNSPNLRELMLVSETDDH-ENLGMLSWNQPSIVPEC--MLS- 343

Query:   358 HSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNM 413
              S Q     +   + GR  D ++A Y+ +NA  L    IK S +R  T L+  T +
Sbjct:   344 -SLQKFTWFK---YLGRPQDRDIAVYILKNACRLRTATIK-SDTRLFTKLEMITEL 394

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201522 AT1G66300 "AT1G66300" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 54/212 (25%), Positives = 102/212 (48%)

Query:     6 RHISEDAPEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLD 65
             R  S ++ +K+     DW    P+ ++ H++  L+ K+  +  VLS++W+YLW +   LD
Sbjct:    13 RLCSPESSDKKSGYEVDWVRDLPESLICHVLLNLSTKDVIKNCVLSTKWRYLWRYVPGLD 72

Query:    66 FDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDA-----KHKCNITNW 120
              D       F  +Y  + ++S+V++ L  +  S +N+F++ F  D           +  W
Sbjct:    73 LDCS----DFT-EY--NTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQMARW 125

Query:   121 VNTAIAKNVRNFELDLSPGTYDNYYEIPQECY--KNLQSG--CGLS-------GIKSLRS 169
             +N  + + V++  LDL  G      EIP   Y  K+L S   CG+         + S++ 
Sbjct:   126 INDVVKRKVQH--LDLEWGAL----EIPPIVYVCKSLVSLKLCGVILPIPEFVCLPSVKV 179

Query:   170 LTLCAVNVTGEV-VEFFIHNCPLLENLRITQS 200
             + L  V    ++ +E  I  C +L++L + +S
Sbjct:   180 IVLDWVKFANDLALEMLISGCLVLKSLTLCRS 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 51/195 (26%), Positives = 91/195 (46%)

Query:    22 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
             DW S  P+ +L  ++  L  K+  ++SVLSSRW+ LW +    +      ++     Y  
Sbjct:    18 DWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCDFHVRNTFSYDH 77

Query:    82 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVRNFELDLSP 138
             + ++ +V+  +  +  S +  FR+ +      +     I  W+N+ +++ V+   L +  
Sbjct:    78 NTFLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLALIRRWINSVVSRKVKY--LGVLD 135

Query:   139 GTYDNY-YEIPQECY--KNLQ----SGCGLSGIK-----SLRSLTLCAVNVTGEV-VEFF 185
              + DNY +E+P   Y  + L      G  L+  K     SL+ L L  V     + +E  
Sbjct:   136 DSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVSLPSLKELHLSIVKFADHMALETL 195

Query:   186 IHNCPLLENLRITQS 200
             I  CP+LENL I +S
Sbjct:   196 ISQCPVLENLNINRS 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008276 AT1G51370 "AT1G51370" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 4.3e-15, P = 4.3e-15
 Identities = 111/409 (27%), Positives = 186/409 (45%)

Query:    21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQ 80
             ED  S+ P+ ++  I+  L+ K++ RTS LS++W+YLW     LD D    Y S      
Sbjct:    18 EDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLDP---YASS----N 70

Query:    81 QSKYISWVNKVLELHRGSRINQFRICFRLDAKH-KCNITNWVNTAIAKNVRNFELDLSPG 139
              +  +S+V    + HR S I + R+   L   H K ++ +W++ A  + +++ ++     
Sbjct:    71 TNTIVSFVESFFDSHRDSWIRKLRL--DLGYHHDKYDLMSWIDAATTRRIQHLDVHCF-- 126

Query:   140 TYDNYYEIPQECYK-----NLQSGCGLSGIKSLRSLTLCAV----NVT--GEV-VEFFIH 187
              +DN  +IP   Y      +L+    +       SL    +    NV+   E  ++  I 
Sbjct:   127 -HDN--KIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFENVSYPNETTLQKLIS 183

Query:   188 NCPLLENLRI--TQSP--DLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFK--- 240
               P+LE L +  T  P  ++L L+    S  LK LDI       ++ I AP L   +   
Sbjct:   184 GSPVLEELILFSTMYPKGNVLQLR----SDTLKRLDIN---EFIDVVIYAPLLQCLRAKM 236

Query:   241 YIGQDINLHVGSLPQLVDVVFHVTP-MVQKMHCIGSIVSYLPQLKTLELDG--CNEVFAQ 297
             Y  ++  +     P  +D+ F  T    QK   I  I+  + +++ L +      E F  
Sbjct:   237 YSTKNFQIISSGFPAKLDIDFVNTGGRYQKKKVIEDILIDISRVRDLVISSNTWKEFFLY 296

Query:   298 FSQR---EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG--RRIGKKR 352
                R   +F  + +LN  F  ++ E L  L   +++CP LE L+L++  N   RR G+KR
Sbjct:   297 SKSRPLLQFRYISHLNARFYISDLEMLPTL---LESCPKLESLILEMVKNQSTRRHGEKR 353

Query:   353 H---QISKHSH---QHLKLVELQGFNGR-EIDFELAFYVFENATMLEKM 394
                  +S         LK VEL+    R E + EL  YV  N+T+L+K+
Sbjct:   354 EPNVMVSTVPWCLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKKL 402

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 74/277 (26%), Positives = 122/277 (44%)

Query:     8 ISEDAPEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFD 67
             + ++   K+K+   D  S  PD +L  I+S L+ KE+  TSVLS RW+ LW     LD D
Sbjct:     1 MDDETSVKEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLD 60

Query:    68 KKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAK 127
                   +FP D     ++S+VN+ L       + +F++ + ++        +W+N  I +
Sbjct:    61 SN----NFPDD---DVFVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKR 113

Query:   128 NVRNFELDLSPGTYDNYYEIPQECYK-----NLQS-GCGLSGIKSL-----RSLTLCAVN 176
              V +F +       D   ++P   Y      NLQ     L   +S+     + + L  V 
Sbjct:   114 RVCHFNVHNEVDDDDELVKMPLSLYSCERLVNLQLYRVALDHPESVSLPCVKIMHLDMVK 173

Query:   177 VTGE-VVEFFIHNCPLLENLRITQSP-DLLSLKVVGSSIPLKCLDIQF-CYSIKE--IEI 231
                +  +E  I  CP+LE L I + P D L +  V S   LK   I    Y  +   + I
Sbjct:   174 YDADSTLEILISGCPVLEELTIVRDPNDSLEVVCVRSQ-SLKSFKIDSERYESQNHVVTI 232

Query:   232 SAPNLLSFK---YIGQDINLH-VGSLPQL-VDVVFHV 263
              AP L       +      +H +G   ++ +DV+F+V
Sbjct:   233 DAPRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNV 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 76/257 (29%), Positives = 119/257 (46%)

Query:    12 APEKQKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVK 71
             +P   KE   D  SR PDDIL  I+S L  + A +TSVLS RW+++W+ T SL F +   
Sbjct:    28 SPSYLKE-AGDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRD-- 84

Query:    72 YMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAK------HKCNITNWVNTAI 125
                  PD         +N++L+ +R  ++  FRIC    A          +I +W+N A+
Sbjct:    85 ----RPD------APCINRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAM 134

Query:   126 AKNVRNFELDLSPGTYDNYYEIPQECYKN-------LQSGCGLSGIK----------SLR 168
             ++NV N  L L    YD    IP+  Y N       L  GC    I           SL+
Sbjct:   135 SRNVENLSLYLDEDKYD----IPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLK 190

Query:   169 SLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE 228
             +L+L   N++ E +   +  CP+LE+L +     L  L +   S  L  L+I     ++ 
Sbjct:   191 NLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDL-SKSPRLITLEITRRCRMEP 249

Query:   229 IEISAPNLLSFKYIGQD 245
              ++ AP++   + I  +
Sbjct:   250 TQLVAPHIRCLRLINSE 266

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
 Identities = 53/202 (26%), Positives = 99/202 (49%)

Query:    19 NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPD 78
             N  D  S  PD++L  I+S L  K A  TS+LS+RW+ +W  T  LD D      +F   
Sbjct:     3 NRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDIDID----AFD-- 56

Query:    79 YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSP 138
                + ++S+ ++ LE  + S +++F++    D    C I  W+  A+ + +++ E+D   
Sbjct:    57 -DATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRF 115

Query:   139 GTYDNYYEIPQECYKNLQSGCGLSGIK-------SLRSLTLCAV--NVTG--EVVEFFIH 187
               +     +     + L S   L  +        SL +L +  +  N+    E +E FI 
Sbjct:   116 SFHFEAVYLTLYLSETLVS-LRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFIS 174

Query:   188 NCPLLENLRITQSPDLLSLKVV 209
             +CP+LE+L + +  D+++ K++
Sbjct:   175 SCPVLEDLTVVRIVDIITEKIL 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155327 AT5G44950 "AT5G44950" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
 Identities = 76/261 (29%), Positives = 125/261 (47%)

Query:    22 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
             D  S  PD +L HI+  L ++E+ RTSVLSSRW+ LW     LD    V    FP D   
Sbjct:     4 DRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPGLD----VNVHDFPAD--G 57

Query:    82 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN-ITNWVNTAIAKNVRNFEL---DLS 137
             + + S ++K LE++RG R+  F++ +  +  +  +    W+ T + + +++ ++   D  
Sbjct:    58 NLFESLMDKFLEVNRG-RLQNFKLNYESNLYYLMDRFVPWIATVVDRGIQHLDVTATDCP 116

Query:   138 PGTYDNYYEIPQECY-KNLQS----GCGLSGIKSLRSLTLCAVNVTGEV------VEFFI 186
             P T D  +     C  K L S      GL   K + SL    +    ++       E  I
Sbjct:   117 PWTID--FMPANICKSKTLVSLKLVNVGLDTPKFVVSLPCLKIMHLEDIFYSPLIAENLI 174

Query:   187 HNCPLLENLRITQS-PDLLS-LKVVGSSIPLKCLDIQFCYSIKE----IEISAPNL--LS 238
               CP+LE+L I ++  D L+ L+V+  +  LK   + F + +      +EI AP L  +S
Sbjct:   175 SGCPVLEDLTIVRNHEDFLNFLRVMSQT--LKNFRLTFDWGMGSNDFSVEIDAPGLKYMS 232

Query:   239 FKYIGQDINLHVGSLPQLVDV 259
             F+    D  + V +L  LV +
Sbjct:   233 FRDSQSD-RIVVKNLSSLVKI 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 71/262 (27%), Positives = 128/262 (48%)

Query:    22 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
             D+ S  P  I+ +I++ L++++A RTSVLSS+W+Y W+  T L FD+K    S      +
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVE 65

Query:    82 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTY 141
             +  + ++  VL LH+G  I++F++      + + +I  W+       ++   L L  G +
Sbjct:    66 TNLVRFITGVLLLHQGP-IHKFQLSTSFK-QCRPDIDQWLLFLSRNGIKELVLKLGEGEF 123

Query:   142 D------NYYEIP--QECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLE 193
                    N  ++   + C+          G   L+SL L  + V  EV+E  I  CPLLE
Sbjct:   124 RVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLE 183

Query:   194 NLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFK---YIGQDI-NL 248
              L ++   D L L +   ++    LD +F    K+I + + P L++     Y+ +D+ + 
Sbjct:   184 FLSLSYF-DSLVLSISAPNLMYLYLDGEF----KDIFLENTPKLVAISVSMYMHEDVTDF 238

Query:   249 HVGSLPQLVDVVFHVTPMVQKM 270
                S   LV  +  V P+++K+
Sbjct:   239 EQSSDYNLVKFLGGV-PLLEKL 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb04g005220.1 hypothetical protein (494 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
pfam08387	51	pfam08387, FBD, FBD	2e-06
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	0.001
pfam00646	48	pfam00646, F-box, F-box domain	0.002

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 362 HLKLVELQGFNGREIDFELAFYVFENATMLEKMII 396
            L+ VE +G+ G E + ELA Y+ ENA +L+KM I
Sbjct: 15  SLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 362 HLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPR 420
            L+++E++G+ G E + EL  Y  ENA  L+K+ I    S     L+    +L   LPR
Sbjct: 6   SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELL--SLPR 62

Length = 72

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 22 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT 59
                PDD+L+ I+S L  K+  R S++S RW+ L  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
KOG4341	483	consensus F-box protein containing LRR [General fu	99.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.53
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.17
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	98.84
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.71
KOG4341	483	consensus F-box protein containing LRR [General fu	98.31
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.28
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.18
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.99
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.59
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.51
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.36
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.67
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.49
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.23
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.65
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.75
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	94.29
PRK15386	426	type III secretion protein GogB; Provisional	94.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.95
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	93.62
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	93.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	92.49
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	92.28
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.07
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	91.94
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	91.9
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.61
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	91.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	91.17
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	90.88
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	89.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	89.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	89.37
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	88.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.59
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.38
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	86.12
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	85.87
PF13013	109	F-box-like_2: F-box-like domain	84.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	84.61
PRK15386	426	type III secretion protein GogB; Provisional	84.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	84.54
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	82.8
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	82.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	82.14
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	81.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	81.27
KOG2982	418	consensus Uncharacterized conserved protein [Funct	81.09

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.60  E-value=6.6e-17  Score=149.00  Aligned_cols=341  Identities=17%  Similarity=0.223  Sum_probs=196.5

Q ss_pred             CCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc------ccccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCCCC
Q 014064           26 RFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSR   99 (431)
Q Consensus        26 ~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~   99 (431)
                      .||.|++..|||+|.++...|++++|+-|..+      |.+...++|..+++              ..|-..+.++.|.+
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------g~VV~~~~~Rcgg~  139 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------GGVVENMISRCGGF  139 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC--------------CcceehHhhhhccc
Confidence            49999999999999999999999999999864      88887776654411              22333334444566


Q ss_pred             eeEEEEEEecCCCCCccHhHHHHHHh-hcCceEEEEEcCCCCCCCc-cccccccccccCCCCCCCCCCCCCEEEEeeE-E
Q 014064          100 INQFRICFRLDAKHKCNITNWVNTAI-AKNVRNFELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAV-N  176 (431)
Q Consensus       100 l~~l~l~~~~~~~~~~~~~~wi~~~~-~~~v~eL~l~~~~~~~~~~-~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~-~  176 (431)
                      ++.++++......    ....-..+. -+++++|.+..+....+.. ..+.             ..|+.|++|.|..| .
T Consensus       140 lk~LSlrG~r~v~----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla-------------~~C~~l~~l~L~~c~~  202 (483)
T KOG4341|consen  140 LKELSLRGCRAVG----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLA-------------RYCRKLRHLNLHSCSS  202 (483)
T ss_pred             cccccccccccCC----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHH-------------Hhcchhhhhhhcccch
Confidence            8888886653221    111111222 2367777665553221111 1221             34566777776664 4


Q ss_pred             EcchhHHHHHhcCCccceeeeccCCCCceeeee---cCCCCcceEEeeccCCcc-----eEEEeCCceeEEEEecee-ee
Q 014064          177 VTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV---GSSIPLKCLDIQFCYSIK-----EIEISAPNLLSFKYIGQD-IN  247 (431)
Q Consensus       177 ~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~---~~~~~L~~L~l~~c~~l~-----~i~i~ap~L~~L~~~~~~-~~  247 (431)
                      +++..++.+..+||+|+.|++..|..+..-.+.   ..+..++.+...+|...+     .+.-..+.+..+++..+. ++
T Consensus       203 iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT  282 (483)
T KOG4341|consen  203 ITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT  282 (483)
T ss_pred             hHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence            455556666666777777777766554331111   123445555555554211     122222333333321110 00


Q ss_pred             -----eecCCCCCceeEEEEeecCcchhhHH-HhhhccCCCceEEEeeeceeeecccccc---cCCCccEEEEEEeecCc
Q 014064          248 -----LHVGSLPQLVDVVFHVTPMVQKMHCI-GSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLMNLNISFTAANQ  318 (431)
Q Consensus       248 -----~~~~~~~~L~~l~i~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~  318 (431)
                           .+--.+..|+.+...-...  ..+.. ..+...+++|+.|.+..+.++.+..+..   ..+.|..|.+.-++.  
T Consensus       283 D~~~~~i~~~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~--  358 (483)
T KOG4341|consen  283 DEDLWLIACGCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL--  358 (483)
T ss_pred             chHHHHHhhhhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce--
Confidence                 0000122233222221111  11222 2788899999999998888544433322   256677776655433  


Q ss_pred             ccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc---ccCccCCccEEEEeeeecCch-hHHHHHHHHhcCcccccE
Q 014064          319 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI---SKHSHQHLKLVELQGFNGREI-DFELAFYVFENATMLEKM  394 (431)
Q Consensus       319 ~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~---~~~~~~~L~~v~i~~~~g~~~-e~~l~~~ll~~a~~Le~m  394 (431)
                      .....+..+-.+||.|++|.++-   +....++|...   ..|...+|+.+++.+..+... .++.    +.+++.||++
T Consensus       359 ~~d~tL~sls~~C~~lr~lslsh---ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~----l~~c~~Leri  431 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSH---CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH----LSICRNLERI  431 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhh---hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH----HhhCccccee
Confidence            34446889999999999999962   33334444322   268889999999999877643 3333    5688999998


Q ss_pred             EEEeCCCchhhHHH
Q 014064          395 IIKPSGSRKRTTLK  408 (431)
Q Consensus       395 ~i~~~~~~~~~~~~  408 (431)
                      .++...+...+.+.
T Consensus       432 ~l~~~q~vtk~~i~  445 (483)
T KOG4341|consen  432 ELIDCQDVTKEAIS  445 (483)
T ss_pred             eeechhhhhhhhhH
Confidence            88877765554433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=3.1e-15  Score=132.40  Aligned_cols=274  Identities=19%  Similarity=0.272  Sum_probs=168.7

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc------ccccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCC
Q 014064           24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRG   97 (431)
Q Consensus        24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~   97 (431)
                      ++.|||||+..|||.|+.+|.++++.|||||+++      |..+   ++..+ .+.       .    ....+.+ + +|
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r-~i~-------p----~~l~~l~-~-rg  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGR-NIH-------P----DVLGRLL-S-RG  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCC-ccC-------h----hHHHHHH-h-CC
Confidence            7889999999999999999999999999999875      6543   33333 222       1    1122222 2 23


Q ss_pred             CCeeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEE
Q 014064           98 SRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNV  177 (431)
Q Consensus        98 ~~l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~  177 (431)
                        |..|++.-.+.+ .+ .+... ...++.+++.++++.........             -..+..|..|+.|.|.+.++
T Consensus       161 --V~v~Rlar~~~~-~p-rlae~-~~~frsRlq~lDLS~s~it~stl-------------~~iLs~C~kLk~lSlEg~~L  222 (419)
T KOG2120|consen  161 --VIVFRLARSFMD-QP-RLAEH-FSPFRSRLQHLDLSNSVITVSTL-------------HGILSQCSKLKNLSLEGLRL  222 (419)
T ss_pred             --eEEEEcchhhhc-Cc-hhhhh-hhhhhhhhHHhhcchhheeHHHH-------------HHHHHHHHhhhhcccccccc
Confidence              666666321111 11 11111 11233357777776542211000             00124678899999999998


Q ss_pred             cchhHHHHHhcCCccceeeeccCCCCceee---eecCCCCcceEEeeccCCcceE-----EEeCCceeEEEEeceeeee-
Q 014064          178 TGEVVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKEI-----EISAPNLLSFKYIGQDINL-  248 (431)
Q Consensus       178 ~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i-----~i~ap~L~~L~~~~~~~~~-  248 (431)
                      +|.-.. -++.-.+|++|+|..|.|++.-.   +-.+|++|..|.+++|......     .-..|+|..|+++|+.-.+ 
T Consensus       223 dD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~  301 (419)
T KOG2120|consen  223 DDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ  301 (419)
T ss_pred             CcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence            776443 36667899999999999886532   2347889999999999743332     1235889999998874322 


Q ss_pred             ------ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc--cCCCccEEEEEEeecCccc
Q 014064          249 ------HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR--EFPKLMNLNISFTAANQET  320 (431)
Q Consensus       249 ------~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~  320 (431)
                            ....+|+|.++.++.+.....  ..+..+..++-|++|.++.|-++....+..  ..|.|++|++..+..    
T Consensus       302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs----  375 (419)
T KOG2120|consen  302 KSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS----  375 (419)
T ss_pred             hhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC----
Confidence                  223578888888774433221  223555677888888888776332222111  167888888766421    


Q ss_pred             HHHHHHHHhhCCCcceEEE
Q 014064          321 LLGLSFIMKACPFLEKLVL  339 (431)
Q Consensus       321 ~~~l~~ll~~~p~L~~L~i  339 (431)
                      ...+.-+.+.||+|+.-.-
T Consensus       376 dt~mel~~e~~~~lkin~q  394 (419)
T KOG2120|consen  376 DTTMELLKEMLSHLKINCQ  394 (419)
T ss_pred             chHHHHHHHhCccccccce
Confidence            2235567778888765443

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.17  E-value=8.3e-11  Score=85.24  Aligned_cols=69  Identities=23%  Similarity=0.354  Sum_probs=58.9

Q ss_pred             cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEeCCCchh--hHHHHHHhhccccCCCccEEEE
Q 014064          357 KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKR--TTLKNSTNMLKAKLPRGVKLTV  426 (431)
Q Consensus       357 ~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~~~~~--~~~~~~~~~~~~~~s~~~~i~~  426 (431)
                      .|..++|+.|+|.+|.|.++|+++++|+++||+.||+|+|..++...+  ..+.+.+..+ +++|+.|+|.|
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~-~~aS~~c~i~~   71 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSL-PRASSSCQVQF   71 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhC-cCCCCceEEEe
Confidence            377789999999999999999999999999999999999999875433  2344555667 99999999987

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=98.84  E-value=2.9e-09  Score=70.89  Aligned_cols=43  Identities=44%  Similarity=0.705  Sum_probs=40.8

Q ss_pred             ccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEe
Q 014064          356 SKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKP  398 (431)
Q Consensus       356 ~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~  398 (431)
                      +.|..+||+.|++.||.|.++|+++++|+++||++||+|+|..
T Consensus         9 p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen    9 PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence            4899999999999999999999999999999999999999863

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.71  E-value=8.8e-09  Score=67.65  Aligned_cols=35  Identities=34%  Similarity=0.640  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcc
Q 014064           24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW   58 (431)
Q Consensus        24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw   58 (431)
                      |+.||+||+.+||++|+.+|.++++.|||+|+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999864

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.31  E-value=1.1e-08  Score=95.33  Aligned_cols=235  Identities=15%  Similarity=0.157  Sum_probs=121.2

Q ss_pred             CceEEEEEcCCCCCCCc-cccccccccccCCCCCCCCCCCCCEEEEeeE-EEcchhHHHHHhcCCccceeeeccCCCCce
Q 014064          128 NVRNFELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDLLS  205 (431)
Q Consensus       128 ~v~eL~l~~~~~~~~~~-~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~  205 (431)
                      .++++.+..+....... -.             ...++||+++|.+.++ ++++..+..+-..|+.|+.|.+..|..++.
T Consensus       139 ~lk~LSlrG~r~v~~sslrt-------------~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~  205 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRT-------------FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD  205 (483)
T ss_pred             ccccccccccccCCcchhhH-------------HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence            57777776655443221 11             1246788888888877 456677777777888888888888887765


Q ss_pred             ee---eecCCCCcceEEeeccCCcce--EE---EeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhh
Q 014064          206 LK---VVGSSIPLKCLDIQFCYSIKE--IE---ISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIV  277 (431)
Q Consensus       206 l~---i~~~~~~L~~L~l~~c~~l~~--i~---i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~  277 (431)
                      ..   +...|++|+.|.+++|+.+..  +.   =.+.+++.+..+|+..                     ....-+....
T Consensus       206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---------------------~~le~l~~~~  264 (483)
T KOG4341|consen  206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---------------------LELEALLKAA  264 (483)
T ss_pred             HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---------------------ccHHHHHHHh
Confidence            43   334678888888888875433  11   1122233333333210                     0011111222


Q ss_pred             ccCCCceEEEeeeceeeeccc---ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcc
Q 014064          278 SYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQ  354 (431)
Q Consensus       278 ~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~  354 (431)
                      ..++-+..+++..+.++.+..   +......|+.|...  .+...+...+..+-++|++|+.|.+.....   ..+.+..
T Consensus       265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~---fsd~~ft  339 (483)
T KOG4341|consen  265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS--SCTDITDEVLWALGQHCHNLQVLELSGCQQ---FSDRGFT  339 (483)
T ss_pred             ccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc--CCCCCchHHHHHHhcCCCceEEEeccccch---hhhhhhh
Confidence            233333333333333222111   11112233333332  233344445667777788888887766432   2333332


Q ss_pred             cccCccCCccEEEEeee-ecCchhHHHHHHHHhcCcccccEEEEeCCCchh
Q 014064          355 ISKHSHQHLKLVELQGF-NGREIDFELAFYVFENATMLEKMIIKPSGSRKR  404 (431)
Q Consensus       355 ~~~~~~~~L~~v~i~~~-~g~~~e~~l~~~ll~~a~~Le~m~i~~~~~~~~  404 (431)
                      +..-.+.+|+.+.+.+. .|.+..   +.-+-.||+.|+++.+.+.....+
T Consensus       340 ~l~rn~~~Le~l~~e~~~~~~d~t---L~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  340 MLGRNCPHLERLDLEECGLITDGT---LASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             hhhcCChhhhhhcccccceehhhh---HhhhccCCchhccCChhhhhhhhh
Confidence            22333456666666653 344432   222456777787777775554433

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.28  E-value=1.8e-07  Score=61.74  Aligned_cols=38  Identities=39%  Similarity=0.593  Sum_probs=31.6

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhccccc
Q 014064           24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFT   61 (431)
Q Consensus        24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~~~   61 (431)
                      |++||+|++.+||++|+..|.++.+.|||+|+++....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            56799999999999999999999999999999986543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.23  E-value=1.5e-06  Score=55.08  Aligned_cols=33  Identities=39%  Similarity=0.638  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHHhhhhhhccc
Q 014064           27 FPDDILIHIISGLTLKEAARTSVLSSRWKYLWT   59 (431)
Q Consensus        27 LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~   59 (431)
                      ||+|++..||++|+.+|..+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998754

>PLN03210 Resistant to P

Probab=98.18  E-value=4.7e-06  Score=92.40  Aligned_cols=84  Identities=19%  Similarity=0.131  Sum_probs=56.8

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEE
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  239 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L  239 (431)
                      .+..+++|++|.|.+|..-. .+..-+..+++|+.|.+.+|..++.+.....+++|+.|.+.+|..+..+.-..++|+.|
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L  730 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWL  730 (1153)
T ss_pred             ccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCee
Confidence            45678899999998874321 23334667889999999998877665443355788999998887655543334566666


Q ss_pred             EEece
Q 014064          240 KYIGQ  244 (431)
Q Consensus       240 ~~~~~  244 (431)
                      .+.+.
T Consensus       731 ~L~~n  735 (1153)
T PLN03210        731 DLDET  735 (1153)
T ss_pred             ecCCC
Confidence            66554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.99  E-value=7.9e-06  Score=89.68  Aligned_cols=216  Identities=18%  Similarity=0.091  Sum_probs=113.4

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceE---EEeCCceeE
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEI---EISAPNLLS  238 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i---~i~ap~L~~  238 (431)
                      ++++|++|+|++..+.+..-   ....++|+.|.|.++.....+ .....+++|+.|.+.++.....+   --..++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCccccccC---ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            66777777777766543210   134567777777766432111 11123467777777766521111   123467777


Q ss_pred             EEEeceee----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccEEEE
Q 014064          239 FKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLNI  311 (431)
Q Consensus       239 L~~~~~~~----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~L~l  311 (431)
                      |++.++..    +-.++.+++|+.+.+..+.....   +..-+..+++|+.|++..+. +. ..+|..   +++|++|.+
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE---IPYEIGGLTSLNHLDLVYNN-LT-GPIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCc---CChhHhcCCCCCEEECcCce-ec-cccChhHhCCCCCCEEEC
Confidence            77766532    22345667777777664432211   11334667788888887665 22 122332   455666665


Q ss_pred             EEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcc
Q 014064          312 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATM  390 (431)
Q Consensus       312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~  390 (431)
                      ..+.-.  .  .+..-+.++++|++|++....-      .+..+. -....+|+.+.+.+-.-..    .....+.+.+.
T Consensus       268 ~~n~l~--~--~~p~~l~~l~~L~~L~Ls~n~l------~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~  333 (968)
T PLN00113        268 YQNKLS--G--PIPPSIFSLQKLISLDLSDNSL------SGEIPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPR  333 (968)
T ss_pred             cCCeee--c--cCchhHhhccCcCEEECcCCee------ccCCChhHcCCCCCcEEECCCCccCC----cCChhHhcCCC
Confidence            432111  1  1223455677888888754311      111222 2245678888776532211    11123567889


Q ss_pred             cccEEEEeCC
Q 014064          391 LEKMIIKPSG  400 (431)
Q Consensus       391 Le~m~i~~~~  400 (431)
                      |+.+.+....
T Consensus       334 L~~L~L~~n~  343 (968)
T PLN00113        334 LQVLQLWSNK  343 (968)
T ss_pred             CCEEECcCCC
Confidence            9999887554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.90  E-value=1.8e-05  Score=75.06  Aligned_cols=219  Identities=14%  Similarity=0.031  Sum_probs=99.2

Q ss_pred             CCCCCCCEEEEeeEEEc--chh---HHHHHhcCCccceeeeccCCCCcee-----eeecCCCCcceEEeeccCCcceEEE
Q 014064          162 SGIKSLRSLTLCAVNVT--GEV---VEFFIHNCPLLENLRITQSPDLLSL-----KVVGSSIPLKCLDIQFCYSIKEIEI  231 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~L~~~~~~~~l-----~i~~~~~~L~~L~l~~c~~l~~i~i  231 (431)
                      ..+++|++|.+.+..+.  ...   +...+..++.|+.|.|.+|......     .+... ++|++|.+.+|.. .....
T Consensus        48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~-~~~~~  125 (319)
T cd00116          48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGL-GDRGL  125 (319)
T ss_pred             hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCcc-chHHH
Confidence            35577778877777655  222   3334555778888888776532110     11111 3466666666541 10000


Q ss_pred             eCCceeEEEEeceeeeeecCCC-CCceeEEEEeecCcc-hhhHHHhhhccCCCceEEEeeeceeeeccc---cccc---C
Q 014064          232 SAPNLLSFKYIGQDINLHVGSL-PQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQRE---F  303 (431)
Q Consensus       232 ~ap~L~~L~~~~~~~~~~~~~~-~~L~~l~i~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~---~  303 (431)
                      .            ...-.+... ++|+++.+..+.... ....+...+..+++++.|++..+. +....   ++..   +
T Consensus       126 ~------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~  192 (319)
T cd00116         126 R------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKAN  192 (319)
T ss_pred             H------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhC
Confidence            0            000011222 445555555333221 111122344555667777766554 32111   1111   3


Q ss_pred             CCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cC--ccCCccEEEEeeeecC-chhH
Q 014064          304 PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KH--SHQHLKLVELQGFNGR-EIDF  378 (431)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~--~~~~L~~v~i~~~~g~-~~e~  378 (431)
                      ++|++|.+..+.........+...+..+|+|+.|++....    ..+.+....  .+  ....|+.+.+.+..-+ ....
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~----l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~  268 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN----LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK  268 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc----CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence            4666666654422222233345556667777777775431    111010000  11  1356777766664322 1223


Q ss_pred             HHHHHHHhcCcccccEEEEeCC
Q 014064          379 ELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       379 ~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                      .+++. +.+.+.|+.+.+....
T Consensus       269 ~l~~~-~~~~~~L~~l~l~~N~  289 (319)
T cd00116         269 DLAEV-LAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHHH-HhcCCCccEEECCCCC
Confidence            34443 3333666666665544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.69  E-value=5.4e-05  Score=83.13  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=18.7

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      .+++|++|.|.++.+.+. +..-+..+++|+.|+|.+|.
T Consensus       138 ~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             ccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCc
Confidence            445566666555554322 12224455555555555543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1.5e-06  Score=78.05  Aligned_cols=201  Identities=17%  Similarity=0.188  Sum_probs=115.5

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee-cCCCCcceEEeeccCCcceEEEeCCceeEEEEec
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG  243 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~-~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~  243 (431)
                      ..|++|.|+...++...+..+++.|..|+.|.|.+..--+.+... +...+|++|.++.|..+.+..             
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~-------------  251 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA-------------  251 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH-------------
Confidence            569999999999999999999999999999999988654443222 233788888888887433221             


Q ss_pred             eeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeecee-ee---cccccccCCCccEEEEEEeecCcc
Q 014064          244 QDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNE-VF---AQFSQREFPKLMNLNISFTAANQE  319 (431)
Q Consensus       244 ~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~-~~---~~~~~~~~~~L~~L~l~~~~~~~~  319 (431)
                        ....+.++.+|.++++..+...... -...+.+.-+++..|+++++.. +.   ...+....++|.+|+|+.+..-..
T Consensus       252 --~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  252 --LQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             --HHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence              1223455666666666644322111 1112223334666777766541 11   112222377888888766433222


Q ss_pred             cHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccc
Q 014064          320 TLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLE  392 (431)
Q Consensus       320 ~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le  392 (431)
                         ++...+..+|.|++|.+.-+..-    .......--..++|.++.+.|.... .-+++   +.+.++.|+
T Consensus       329 ---~~~~~~~kf~~L~~lSlsRCY~i----~p~~~~~l~s~psl~yLdv~g~vsd-t~mel---~~e~~~~lk  390 (419)
T KOG2120|consen  329 ---DCFQEFFKFNYLQHLSLSRCYDI----IPETLLELNSKPSLVYLDVFGCVSD-TTMEL---LKEMLSHLK  390 (419)
T ss_pred             ---hHHHHHHhcchheeeehhhhcCC----ChHHeeeeccCcceEEEEeccccCc-hHHHH---HHHhCcccc
Confidence               45667777888888888554211    0000000123456777777665332 23444   333445444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.59  E-value=0.00014  Score=69.00  Aligned_cols=219  Identities=16%  Similarity=0.075  Sum_probs=117.8

Q ss_pred             CCCCCCEEEEeeEEEcchh---HHHHHhcCCccceeeeccCCCCc---ee----eeecCCCCcceEEeeccCCcceEEEe
Q 014064          163 GIKSLRSLTLCAVNVTGEV---VEFFIHNCPLLENLRITQSPDLL---SL----KVVGSSIPLKCLDIQFCYSIKEIEIS  232 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~~~~---~l----~i~~~~~~L~~L~l~~c~~l~~i~i~  232 (431)
                      .+++|+.|.+.++.+++..   +...+...|.|+.|.+.++..-.   .+    .....+++|+.|.+.+|.......  
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--   98 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC--   98 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH--
Confidence            4567888888888876543   45556677888888887654221   00    000123566666666554210000  


Q ss_pred             CCceeEEEEeceeeeeecCCCCCceeEEEEeecCc-chhhHHHhhhccC-CCceEEEeeeceeeeccc---ccc---cCC
Q 014064          233 APNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMV-QKMHCIGSIVSYL-PQLKTLELDGCNEVFAQF---SQR---EFP  304 (431)
Q Consensus       233 ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~-~~~~~~~~~~~~~-~~l~~L~l~~~~~~~~~~---~~~---~~~  304 (431)
                       +          ........ ++|+.+.+..+... .....+...+..+ ++|+.|.+.++. +....   +..   ...
T Consensus        99 -~----------~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~  165 (319)
T cd00116          99 -G----------VLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANR  165 (319)
T ss_pred             -H----------HHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCC
Confidence             0          00000011 34666666543322 1222333444566 899999998887 44211   111   145


Q ss_pred             CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCC--cccc-cCccCCccEEEEeeeecCc-hhHHH
Q 014064          305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKR--HQIS-KHSHQHLKLVELQGFNGRE-IDFEL  380 (431)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~--~~~~-~~~~~~L~~v~i~~~~g~~-~e~~l  380 (431)
                      +|++|.+..+.-.......+...+..+++|+.|++....-    .+.+  .+.. -..+++|+.+.+.+..-++ .-..+
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i----~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL----TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc----ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            7888888654222122223445566678999999976421    1111  1111 2235789999998754333 22334


Q ss_pred             HHHHHhcCcccccEEEEeCC
Q 014064          381 AFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       381 ~~~ll~~a~~Le~m~i~~~~  400 (431)
                      +..+....+.|+++.+....
T Consensus       242 ~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         242 ASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHhccCCCceEEEccCCC
Confidence            44444456899999988764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.54  E-value=0.00019  Score=79.90  Aligned_cols=17  Identities=18%  Similarity=0.084  Sum_probs=11.3

Q ss_pred             HHHhhCCCcceEEEEee
Q 014064          326 FIMKACPFLEKLVLQIW  342 (431)
Q Consensus       326 ~ll~~~p~L~~L~i~~~  342 (431)
                      .-+.++++|+.|.|..+
T Consensus       796 ~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        796 SSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             hhhhCCCCCCEEECCCC
Confidence            34567777777777543

syringae 6; Provisional

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.51  E-value=5.1e-05  Score=69.76  Aligned_cols=198  Identities=19%  Similarity=0.203  Sum_probs=121.6

Q ss_pred             CCCCCCCCCEEEEeeEEEcc---hhHHHHHhcCCccceeeeccCCCCce---eeeecCCCCcceEEeeccCCcceEEEeC
Q 014064          160 GLSGIKSLRSLTLCAVNVTG---EVVEFFIHNCPLLENLRITQSPDLLS---LKVVGSSIPLKCLDIQFCYSIKEIEISA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~---l~i~~~~~~L~~L~l~~c~~l~~i~i~a  233 (431)
                      .+..+|.|++|+|+...+..   +.+..++++|-.|++|.|.+|- +..   -++.   .-|.+|..      ..-.-+.
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~---~al~~l~~------~kk~~~~  156 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG---RALFELAV------NKKAASK  156 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH---HHHHHHHH------HhccCCC
Confidence            34577999999999998875   4588999999999999999994 221   1111   12333331      1222356


Q ss_pred             CceeEEEEeceee--------eeecCCCCCceeEEEEeecCcchhh-HHHhhhccCCCceEEEeeeceeeec------cc
Q 014064          234 PNLLSFKYIGQDI--------NLHVGSLPQLVDVVFHVTPMVQKMH-CIGSIVSYLPQLKTLELDGCNEVFA------QF  298 (431)
Q Consensus       234 p~L~~L~~~~~~~--------~~~~~~~~~L~~l~i~~~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~------~~  298 (431)
                      |.|+.+.+..+..        .-.+...|.|.++++..+.....-. -+..-+..|++|+.|++++.. ...      ..
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHH
Confidence            7788887764422        1234466889999988765432211 122456789999999998776 221      11


Q ss_pred             ccccCCCccEEEEEEeecCcccHHHH-HHHHhhCCCcceEEEEeeccccccCCCCcccc-cC--ccCCccEEEEeeee
Q 014064          299 SQREFPKLMNLNISFTAANQETLLGL-SFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KH--SHQHLKLVELQGFN  372 (431)
Q Consensus       299 ~~~~~~~L~~L~l~~~~~~~~~~~~l-~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~--~~~~L~~v~i~~~~  372 (431)
                      ..+.+++|+.|.++-+.-.......+ ..+-+..|+|+.|.+.++.-    ..++.... .|  ...+|+.+.+.+-.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI----t~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI----TRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh----HHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            22237788888887665444444443 44556789999999977521    11111110 11  24678888777744

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.36  E-value=0.00028  Score=39.34  Aligned_cols=25  Identities=36%  Similarity=0.638  Sum_probs=22.7

Q ss_pred             CCCEEEEeeEEEcch-hHHHHHhcCC
Q 014064          166 SLRSLTLCAVNVTGE-VVEFFIHNCP  190 (431)
Q Consensus       166 ~L~~L~L~~~~~~~~-~l~~ll~~cp  190 (431)
                      +||+|+|.+|.+.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999776 6999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.15  E-value=0.00017  Score=70.85  Aligned_cols=213  Identities=18%  Similarity=0.184  Sum_probs=109.3

Q ss_pred             CCCCCCCCCEEEEeeEEEcch-hHHHHHhcCCccceeeeccCC-------------CCceeeeec------------CCC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGE-VVEFFIHNCPLLENLRITQSP-------------DLLSLKVVG------------SSI  213 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~-------------~~~~l~i~~------------~~~  213 (431)
                      .|.++|.|+.|.|....+..- .+  -+.+.|.|+.|.|....             +++.+++..            .+.
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             Hhhhcchhhhhhccccceeeehhh--hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence            444577777777776655421 11  14456666666665432             111111110            113


Q ss_pred             CcceEEeeccCCcceEEEe----CCceeEEEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCce
Q 014064          214 PLKCLDIQFCYSIKEIEIS----APNLLSFKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLK  284 (431)
Q Consensus       214 ~L~~L~l~~c~~l~~i~i~----ap~L~~L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~  284 (431)
                      +|+.|.+++.. ++.|.++    +++|+.|+++...+. +   .+..+..|+++.+..+.    ++++. .-+.++.+|+
T Consensus       294 ~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns----i~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  294 SLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS----IDHLAEGAFVGLSSLH  368 (873)
T ss_pred             hhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc----hHHHHhhHHHHhhhhh
Confidence            34444444333 4555554    467777777655432 1   23334556666655322    23332 4456778888


Q ss_pred             EEEeeecee---eecccc-cccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCcc
Q 014064          285 TLELDGCNE---VFAQFS-QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSH  360 (431)
Q Consensus       285 ~L~l~~~~~---~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~  360 (431)
                      .|+++...-   +++... -.+++.|+.|.+..+--  ..+  -.+-+...++||+|++....   +   ....+..+..
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql--k~I--~krAfsgl~~LE~LdL~~Na---i---aSIq~nAFe~  438 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL--KSI--PKRAFSGLEALEHLDLGDNA---I---ASIQPNAFEP  438 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCcee--eec--chhhhccCcccceecCCCCc---c---eeeccccccc
Confidence            888866651   222211 12256677777644311  111  13566788999999885431   1   0111124444


Q ss_pred             CCccEEEEee--eecCchhHHHHHHHHhcCc
Q 014064          361 QHLKLVELQG--FNGREIDFELAFYVFENAT  389 (431)
Q Consensus       361 ~~L~~v~i~~--~~g~~~e~~l~~~ll~~a~  389 (431)
                      -+|+++.|..  |-..++-..++..+.++-.
T Consensus       439 m~Lk~Lv~nSssflCDCql~Wl~qWl~~~~l  469 (873)
T KOG4194|consen  439 MELKELVMNSSSFLCDCQLKWLAQWLYRRKL  469 (873)
T ss_pred             chhhhhhhcccceEEeccHHHHHHHHHhccc
Confidence            4777777755  5556666667777765543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.00  E-value=0.00032  Score=72.85  Aligned_cols=212  Identities=17%  Similarity=0.218  Sum_probs=111.1

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE---eCCceeEEEE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI---SAPNLLSFKY  241 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i---~ap~L~~L~~  241 (431)
                      =+|+..++.+.......++.+...+  |++|.|.++...+......       -.++-+.-+..+ +   .--+|++|++
T Consensus        60 f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~-------~~idi~~lL~~~-Ln~~sr~nL~~LdI  129 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDD-------ATIDIISLLKDL-LNEESRQNLQHLDI  129 (699)
T ss_pred             heeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhh-------hhccHHHHHHHH-HhHHHHHhhhhcCc
Confidence            4677777777776666565443333  9999999876543211100       000000000000 0   0124444444


Q ss_pred             eceee-----e-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEE-EEEe
Q 014064          242 IGQDI-----N-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN-ISFT  314 (431)
Q Consensus       242 ~~~~~-----~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~-l~~~  314 (431)
                      .|...     + -.-.-+|+|+.+.+.......  +-+..+..++|+|..|+++++. +..-   .+.++|++|+ |.+.
T Consensus       130 ~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~--~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  130 SGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN--DDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMR  203 (699)
T ss_pred             cccchhhccHHHHHhhhCcccceEEecCceecc--hhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhcc
Confidence            44311     0 111235666666665322221  1133778899999999998888 4332   2234555554 3332


Q ss_pred             ecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccc
Q 014064          315 AANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLE  392 (431)
Q Consensus       315 ~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le  392 (431)
                      .-.-.....+..++ +..+|+.|+|+........   .....  +|..- |.++++.++.|++-.-++++.++..=|.|+
T Consensus       204 nLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~---~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  204 NLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDT---KIIEQYLECGMV-LPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             CCCCCchhhHHHHh-cccCCCeeeccccccccch---HHHHHHHHhccc-CccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            11112222333333 4789999999876432111   01111  44432 555566666788877888898998778888


Q ss_pred             cEEEE
Q 014064          393 KMIIK  397 (431)
Q Consensus       393 ~m~i~  397 (431)
                      .+.+.
T Consensus       279 ~i~~~  283 (699)
T KOG3665|consen  279 QIAAL  283 (699)
T ss_pred             hhhhh
Confidence            88744

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00012  Score=69.21  Aligned_cols=196  Identities=20%  Similarity=0.154  Sum_probs=120.7

Q ss_pred             CceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCCC--c
Q 014064          128 NVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDL--L  204 (431)
Q Consensus       128 ~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~--~  204 (431)
                      .++++.++.+.......-             .....||+++.|+|+..-++. ..+.++....|+||.|+|......  .
T Consensus       122 kL~~IsLdn~~V~~~~~~-------------~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIE-------------EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             hhhheeecCccccccchh-------------hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence            577788877653321100             123578999999999987765 557888899999999999875421  1


Q ss_pred             eeeeecCCCCcceEEeeccCC----cceEEEeCCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhh
Q 014064          205 SLKVVGSSIPLKCLDIQFCYS----IKEIEISAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSI  276 (431)
Q Consensus       205 ~l~i~~~~~~L~~L~l~~c~~----l~~i~i~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~  276 (431)
                      .-.....++.||.|.+..|.-    ...+....|+|+.|.+.+....    ....-+..|+++.++-+..... + ....
T Consensus       189 ~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~-~-~~~~  266 (505)
T KOG3207|consen  189 SSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF-D-QGYK  266 (505)
T ss_pred             cccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc-c-cccc
Confidence            111222448899999999972    3345567899999988776311    1222355677777774432211 0 0134


Q ss_pred             hccCCCceEEEeeeceeeecccccc--------cCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          277 VSYLPQLKTLELDGCNEVFAQFSQR--------EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       277 ~~~~~~l~~L~l~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      ...++.|+.|.+..+. +.....++        .|++|+.|.+..+.-..+..   ..=++..++|+.|.+...
T Consensus       267 ~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s---l~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS---LNHLRTLENLKHLRITLN  336 (505)
T ss_pred             cccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccc---cchhhccchhhhhhcccc
Confidence            5778888888887766 33222222        28899999886542222221   123445677777766543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.67  E-value=0.00054  Score=58.43  Aligned_cols=126  Identities=24%  Similarity=0.267  Sum_probs=40.9

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--E--eCCceeE
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--I--SAPNLLS  238 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i--~ap~L~~  238 (431)
                      +.-.++.|.|.+..++.  ++.+-..+..|+.|++.++.- +.+.-...+++|+.|.+++.. +..+.  +  ..|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--ccchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence            44567888888887653  333223567788888877742 222222234677777776554 33332  2  2577888


Q ss_pred             EEEeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          239 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       239 L~~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      |.+.+..+.     ..+..+|+|+.+.+.-++......|-.-++..+|+|+.|+-....
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            877766442     123456777777776555554444444556667777776654433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.58  E-value=0.0018  Score=59.80  Aligned_cols=223  Identities=16%  Similarity=0.149  Sum_probs=126.0

Q ss_pred             CCCCCCEEEEeeEEEcch---hHHHHHhcCCccceeeeccCC-CCceeeeecCCCCcceEEeeccCCcceEEEeCCceeE
Q 014064          163 GIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSP-DLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS  238 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~-~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~  238 (431)
                      .+..++.|.|++..|..+   .+...+++-+.|++-.+..-. +.....+.   ..|+.|        ...-+.+|.|++
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~---e~L~~l--------~~aL~~~~~L~~   96 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIP---EALKML--------SKALLGCPKLQK   96 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHH---HHHHHH--------HHHHhcCCceeE
Confidence            446778888888877654   355666666666655554432 11111111   111111        112234566777


Q ss_pred             EEEeceeee--------eecCCCCCceeEEEEeecCcchhhH----------HHhhhccCCCceEEEeeeceeeeccc--
Q 014064          239 FKYIGQDIN--------LHVGSLPQLVDVVFHVTPMVQKMHC----------IGSIVSYLPQLKTLELDGCNEVFAQF--  298 (431)
Q Consensus       239 L~~~~~~~~--------~~~~~~~~L~~l~i~~~~~~~~~~~----------~~~~~~~~~~l~~L~l~~~~~~~~~~--  298 (431)
                      ++++++.+.        -.+.++..|+++.++-+......+.          ..+...+-+.|+.+..+... .+...  
T Consensus        97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~  175 (382)
T KOG1909|consen   97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGAT  175 (382)
T ss_pred             eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHH
Confidence            776654221        0233567777777774433211111          11445566677777765444 22111  


Q ss_pred             -c---cccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc--ccCccCCccEEEEeeee
Q 014064          299 -S---QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI--SKHSHQHLKLVELQGFN  372 (431)
Q Consensus       299 -~---~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~--~~~~~~~L~~v~i~~~~  372 (431)
                       +   ....++|+.+++.-+.-...+...+..-+..||.|+.|+|+-..+.   .+.+..-  .-+..++|+.+.+.++.
T Consensus       176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft---~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT---LEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh---hHHHHHHHHHhcccchheeecccccc
Confidence             0   1114578888877665555566667888899999999999654321   1111111  13456688888887765


Q ss_pred             -cCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064          373 -GREIDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       373 -g~~~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                       -+..-..+++.+-+.+|.|+.+.+..+.
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcch
Confidence             3456678888888889999998877765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.51  E-value=0.00069  Score=68.07  Aligned_cols=40  Identities=18%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcccc
Q 014064           21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTF   60 (431)
Q Consensus        21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~~   60 (431)
                      .+.....|++....+....+..+...+..++++|......
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            3556678888888888888888888888888888876444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.49  E-value=0.0022  Score=66.70  Aligned_cols=60  Identities=20%  Similarity=0.267  Sum_probs=44.9

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeec
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQF  222 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~  222 (431)
                      .-||+|++|.+.+..+..+++..+..+.|+|..|++.++. ++.+.-.+.+++|+.|.+.+
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrn  204 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRN  204 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccC
Confidence            3579999999999999888899999999999999999874 33333333445555555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.23  E-value=0.00049  Score=65.28  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=69.4

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee-cCCCCcceEEeeccCCcc--e--EEEeCCcee
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCYSIK--E--IEISAPNLL  237 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~-~~~~~L~~L~l~~c~~l~--~--i~i~ap~L~  237 (431)
                      .+++||+|.|.+|.++-.+++.++..||.|+.|.|....+....... .-+.+|+.|++++...+.  .  ..-..|+|.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence            67999999999999998889999999999999999988643221111 123689999998876322  1  222347777


Q ss_pred             EEEEeceeee-e---------ecCCCCCceeEEEEeec
Q 014064          238 SFKYIGQDIN-L---------HVGSLPQLVDVVFHVTP  265 (431)
Q Consensus       238 ~L~~~~~~~~-~---------~~~~~~~L~~l~i~~~~  265 (431)
                      .|.+....++ +         ....+|+|+.+.+..++
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            7776644321 1         12345666666666443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.19  E-value=0.00045  Score=69.40  Aligned_cols=80  Identities=26%  Similarity=0.417  Sum_probs=55.8

Q ss_pred             CCCCCCCEEEEeeEE-EcchhHHHHHhcCCccceeeeccCCCCce---eeeecCCCCcceEEeeccCCcc-----eEEEe
Q 014064          162 SGIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLS---LKVVGSSIPLKCLDIQFCYSIK-----EIEIS  232 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~---l~i~~~~~~L~~L~l~~c~~l~-----~i~i~  232 (431)
                      ..+++|+.|.|.++. +++..+..+...||.|+.|.+.+|..++.   ..+...++.|++|.+.+|..+.     .+...
T Consensus       240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~  319 (482)
T KOG1947|consen  240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKN  319 (482)
T ss_pred             hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHh
Confidence            456888888888886 77888888888888999988888876433   2333466788888888887532     22233


Q ss_pred             CCceeEEEE
Q 014064          233 APNLLSFKY  241 (431)
Q Consensus       233 ap~L~~L~~  241 (431)
                      .|+|+.|.+
T Consensus       320 c~~l~~l~~  328 (482)
T KOG1947|consen  320 CPNLRELKL  328 (482)
T ss_pred             Ccchhhhhh
Confidence            566666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.83  E-value=0.012  Score=53.50  Aligned_cols=216  Identities=10%  Similarity=0.063  Sum_probs=119.7

Q ss_pred             CCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCCCceee-eecCCCCcceEEeeccC----CcceEEEeCCce
Q 014064          163 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCY----SIKEIEISAPNL  236 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~----~l~~i~i~ap~L  236 (431)
                      .+..++.|.|.+..+++ ..+..++.+.|.|+.|+|.+..--..+. .+.+..+|+.|.+.+..    ...+.--+-|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45788888888888877 5688899999999999998765332221 22355788888887754    112222345666


Q ss_pred             eEEEEeceeeeeec-------CCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc---ccccCCCc
Q 014064          237 LSFKYIGQDINLHV-------GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKL  306 (431)
Q Consensus       237 ~~L~~~~~~~~~~~-------~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L  306 (431)
                      +.|+++........       .-.+.+..++..-+.. .......++...+|++..+-+..++ +....   -.+.|+.+
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-QLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHH-HHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence            66666544221000       0112222222221100 0112223777888999988887776 32221   12226666


Q ss_pred             cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCC-CCcccccCccCCccEEEEeeee------cCchhHH
Q 014064          307 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGK-KRHQISKHSHQHLKLVELQGFN------GREIDFE  379 (431)
Q Consensus       307 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~-~~~~~~~~~~~~L~~v~i~~~~------g~~~e~~  379 (431)
                      .-|.|....-  ..+. -..-|..+|.|..|.+.-+   |.++. .+..+--....+|..|++.+-.      ..+.|..
T Consensus       227 ~~LnL~~~~i--dswa-svD~Ln~f~~l~dlRv~~~---Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~  300 (418)
T KOG2982|consen  227 SCLNLGANNI--DSWA-SVDALNGFPQLVDLRVSEN---PLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERR  300 (418)
T ss_pred             hhhhhccccc--ccHH-HHHHHcCCchhheeeccCC---cccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHH
Confidence            6666654322  2222 3456788999999988554   22221 1110111233567777776632      2247788


Q ss_pred             HHHHHHh
Q 014064          380 LAFYVFE  386 (431)
Q Consensus       380 l~~~ll~  386 (431)
                      |++|.+.
T Consensus       301 fVRyym~  307 (418)
T KOG2982|consen  301 FVRYYMS  307 (418)
T ss_pred             HHHHHhh
Confidence            8888764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.65  E-value=0.021  Score=60.08  Aligned_cols=15  Identities=7%  Similarity=-0.210  Sum_probs=8.0

Q ss_pred             HhhCCCcceEEEEee
Q 014064          328 MKACPFLEKLVLQIW  342 (431)
Q Consensus       328 l~~~p~L~~L~i~~~  342 (431)
                      +.++++|+.|++...
T Consensus       441 l~~L~~L~~LdLs~N  455 (788)
T PRK15387        441 LIHLSSETTVNLEGN  455 (788)
T ss_pred             HhhccCCCeEECCCC
Confidence            344556666665543

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.75  E-value=0.026  Score=53.87  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=34.3

Q ss_pred             cCCCCCHHHHHHHHhcCC-hHHHHHHHHHhhhhhhcccc
Q 014064           23 WFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWTF   60 (431)
Q Consensus        23 ~is~LPd~lL~~Ils~L~-~~~~~r~s~vSrrWr~lw~~   60 (431)
                      .+++||+|+|..|..+|+ .-|.+|.+.||+.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            378899999999999997 78999999999999987554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=94.29  E-value=0.021  Score=56.68  Aligned_cols=58  Identities=19%  Similarity=0.185  Sum_probs=38.2

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeecc
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC  223 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c  223 (431)
                      +.-++|+|++.++.+-++.. +-..|+|++++|+...-....++...+..|++|.+.+.
T Consensus        78 ~~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N  135 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN  135 (873)
T ss_pred             cceeeeeccccccccCcHHH-HhcCCcceeeeeccchhhhcccccccccceeEEeeecc
Confidence            34557888888877655543 56788888888887754333344444456777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.25  E-value=0.09  Score=50.92  Aligned_cols=14  Identities=29%  Similarity=0.579  Sum_probs=7.6

Q ss_pred             CccceeeeccCCCC
Q 014064          190 PLLENLRITQSPDL  203 (431)
Q Consensus       190 p~Le~L~L~~~~~~  203 (431)
                      +.|+.|.+.+|..+
T Consensus        94 ~nLe~L~Ls~Cs~L  107 (426)
T PRK15386         94 EGLEKLTVCHCPEI  107 (426)
T ss_pred             hhhhheEccCcccc
Confidence            45566666655433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.95  E-value=0.013  Score=53.23  Aligned_cols=213  Identities=20%  Similarity=0.165  Sum_probs=95.3

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc--ee----------------------eeecCC
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL--SL----------------------KVVGSS  212 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~l----------------------~i~~~~  212 (431)
                      +|-.+..|.+|+++.++.|..  +.+..+...=|.|+.+.+.+...-.  .+                      ......
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~--~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW  283 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALST--ENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTW  283 (490)
T ss_pred             cccchHHhhhhheeeeeccch--hheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchH
Confidence            343445678888888887742  3344455566888888777642100  00                      000011


Q ss_pred             CCcceEEeeccCCcceE---EEeCCceeEEEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEE
Q 014064          213 IPLKCLDIQFCYSIKEI---EISAPNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLE  287 (431)
Q Consensus       213 ~~L~~L~l~~c~~l~~i---~i~ap~L~~L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~  287 (431)
                      +.|..|++++.. +..+   .--+|.++.|+++.+.+.  -.+..+++|+.+.++.+...    .+.+.-..+.|.++|.
T Consensus       284 q~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls----~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  284 QELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA----ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH----hhhhhHhhhcCEeeee
Confidence            223333333221 1111   112466666665544332  12334555555555532211    1113334455556665


Q ss_pred             eeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc---cCccCCcc
Q 014064          288 LDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS---KHSHQHLK  364 (431)
Q Consensus       288 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~---~~~~~~L~  364 (431)
                      +.... ++.-.-...+.+|.+|++..+.-  ..+ .-.+-+.+.|+||++.+...+   ...- .+.+.   +....+--
T Consensus       359 La~N~-iE~LSGL~KLYSLvnLDl~~N~I--e~l-deV~~IG~LPCLE~l~L~~NP---l~~~-vdYRTKVLa~FGERaS  430 (490)
T KOG1259|consen  359 LAQNK-IETLSGLRKLYSLVNLDLSSNQI--EEL-DEVNHIGNLPCLETLRLTGNP---LAGS-VDYRTKVLARFGERAS  430 (490)
T ss_pred             hhhhh-HhhhhhhHhhhhheeccccccch--hhH-HHhcccccccHHHHHhhcCCC---cccc-chHHHHHHHHHhhhhh
Confidence            54444 22211111134455555433211  111 123445667777777765432   1100 00111   22233445


Q ss_pred             EEEEeeeecCchhHHHHHHH
Q 014064          365 LVELQGFNGREIDFELAFYV  384 (431)
Q Consensus       365 ~v~i~~~~g~~~e~~l~~~l  384 (431)
                      .|.+.|-.+.+.|++-++.+
T Consensus       431 E~~LD~~~~~~~ELDTV~Vl  450 (490)
T KOG1259|consen  431 EISLDNEPGNQQELDTVLVL  450 (490)
T ss_pred             heecCCCCcchhhhhHHHHH
Confidence            56666666777676666544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=93.62  E-value=0.17  Score=53.52  Aligned_cols=129  Identities=17%  Similarity=0.104  Sum_probs=60.8

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEece
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ  244 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~  244 (431)
                      ++|++|.|.+..++.  +.   ...+.|+.|.|.++. +..+  .....+|+.|.+.++. +..+....|+|+.|+++++
T Consensus       242 ~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls~N~-L~~L--p~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        242 PELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHL--PALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN  312 (788)
T ss_pred             CCCcEEEecCCccCc--cc---CcccccceeeccCCc-hhhh--hhchhhcCEEECcCCc-cccccccccccceeECCCC
Confidence            566666666554432  11   113456666665553 2211  1111456666666554 4444334567777777765


Q ss_pred             eeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEE
Q 014064          245 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNIS  312 (431)
Q Consensus       245 ~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  312 (431)
                      .+...-...++|..+.+..+...       .+.....+|+.|+++... +.  .+|....+|+.|.+.
T Consensus       313 ~L~~Lp~lp~~L~~L~Ls~N~L~-------~LP~lp~~Lq~LdLS~N~-Ls--~LP~lp~~L~~L~Ls  370 (788)
T PRK15387        313 QLASLPALPSELCKLWAYNNQLT-------SLPTLPSGLQELSVSDNQ-LA--SLPTLPSELYKLWAY  370 (788)
T ss_pred             ccccCCCCcccccccccccCccc-------cccccccccceEecCCCc-cC--CCCCCCcccceehhh
Confidence            43211111223444444321111       222222378888887665 32  234344566666553

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=93.30  E-value=0.055  Score=49.88  Aligned_cols=37  Identities=24%  Similarity=0.474  Sum_probs=34.5

Q ss_pred             CCcCCCCC----HHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064           21 EDWFSRFP----DDILIHIISGLTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        21 ~D~is~LP----d~lL~~Ils~L~~~~~~r~s~vSrrWr~l   57 (431)
                      .|-++.||    |+|...|||+|...++..+-.+||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            57889999    99999999999999999999999999863

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=92.49  E-value=0.045  Score=37.65  Aligned_cols=14  Identities=36%  Similarity=0.581  Sum_probs=6.6

Q ss_pred             hcCCccceeeeccC
Q 014064          187 HNCPLLENLRITQS  200 (431)
Q Consensus       187 ~~cp~Le~L~L~~~  200 (431)
                      .++|.|+.|.+.++
T Consensus        22 ~~l~~L~~L~l~~N   35 (61)
T PF13855_consen   22 SNLPNLETLDLSNN   35 (61)
T ss_dssp             TTGTTESEEEETSS
T ss_pred             cCCCCCCEeEccCC
Confidence            34455555555433

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=92.28  E-value=0.074  Score=33.90  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=26.2

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      ++|++|.|.+..+++  +...++.||+|+.|.+.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578899998888764  44447889999999998884

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.07  E-value=0.093  Score=56.43  Aligned_cols=18  Identities=28%  Similarity=0.346  Sum_probs=10.7

Q ss_pred             hhhccCCCceEEEeeece
Q 014064          275 SIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       275 ~~~~~~~~l~~L~l~~~~  292 (431)
                      ++...+++|+.|.+....
T Consensus       636 ~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  636 GILLELQSLRVLRLPRSA  653 (889)
T ss_pred             chhhhcccccEEEeeccc
Confidence            444556777777765443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=91.94  E-value=0.0017  Score=64.47  Aligned_cols=84  Identities=23%  Similarity=0.196  Sum_probs=42.4

Q ss_pred             eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc-cCCCccEEEEEEeecCcccHHHHHH
Q 014064          248 LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR-EFPKLMNLNISFTAANQETLLGLSF  326 (431)
Q Consensus       248 ~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~  326 (431)
                      .++.++.+|.++.++.+...    -+...+..+++|+.|++++.. ++.-.... ...+|.+|+++-+     ....+..
T Consensus       216 tsld~l~NL~dvDlS~N~Lp----~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrN-----QLt~LP~  285 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLP----IVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRN-----QLTVLPD  285 (1255)
T ss_pred             CchhhhhhhhhccccccCCC----cchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccc-----hhccchH
Confidence            34455566666655533211    122445566777777777665 32211111 1456666666432     2223444


Q ss_pred             HHhhCCCcceEEEEe
Q 014064          327 IMKACPFLEKLVLQI  341 (431)
Q Consensus       327 ll~~~p~L~~L~i~~  341 (431)
                      -+-..|.|++|.+..
T Consensus       286 avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANN  300 (1255)
T ss_pred             HHhhhHHHHHHHhcc
Confidence            555566677666643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=91.90  E-value=0.2  Score=34.31  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=19.1

Q ss_pred             CccceeeeccCCCCceeeee--cCCCCcceEEeeccC
Q 014064          190 PLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  224 (431)
Q Consensus       190 p~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~  224 (431)
                      |+|+.|.+.+| .++.+.-.  ..+++|+.|.+.++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~   36 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN   36 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc
Confidence            57777888777 33333211  234666666666544

...

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.61  E-value=0.15  Score=46.74  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=31.8

Q ss_pred             cCCcCCCCCHHHHHHHHhc-----CChHHHHHHHHHhhhhhhc
Q 014064           20 LEDWFSRFPDDILIHIISG-----LTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        20 ~~D~is~LPd~lL~~Ils~-----L~~~~~~r~s~vSrrWr~l   57 (431)
                      .-+.|+.||||||..||..     ++.++..++|+|||.|+..
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            3456789999999999864     5679999999999999854

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=91.35  E-value=0.14  Score=43.75  Aligned_cols=64  Identities=27%  Similarity=0.351  Sum_probs=26.7

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC--CCceeeeecCCCCcceEEeeccC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP--DLLSLKVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~--~~~~l~i~~~~~~L~~L~l~~c~  224 (431)
                      ++..+++|++|.+.+..++.-. +.+...||+|++|.|.+..  .+..+.--..+++|+.|++.+.+
T Consensus        59 ~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   59 GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             T----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            4567899999999988876521 2233578999999998764  23333333456788888887665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=91.17  E-value=0.0083  Score=59.86  Aligned_cols=22  Identities=14%  Similarity=0.144  Sum_probs=14.2

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEc
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVT  178 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~  178 (431)
                      +|+....+.+|++|.|++..+.
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhh
Confidence            4555566677777777766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=90.88  E-value=0.13  Score=47.04  Aligned_cols=30  Identities=27%  Similarity=0.269  Sum_probs=15.0

Q ss_pred             CCcceEEeeccC--CcceEEEeCCceeEEEEe
Q 014064          213 IPLKCLDIQFCY--SIKEIEISAPNLLSFKYI  242 (431)
Q Consensus       213 ~~L~~L~l~~c~--~l~~i~i~ap~L~~L~~~  242 (431)
                      .+|+.+.++.|.  ++..+....|.|..+...
T Consensus       214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~  245 (490)
T KOG1259|consen  214 RNLKTLKFSALSTENIVDIELLKPTLQTICVH  245 (490)
T ss_pred             hhhheeeeeccchhheeceeecCchhheeeee
Confidence            455555555554  233444445555555544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.43  E-value=0.22  Score=44.94  Aligned_cols=172  Identities=16%  Similarity=0.073  Sum_probs=101.3

Q ss_pred             CCCCCCCCCEEEEeeEEEcc---hhHHHHHhcCCccceeeeccCCCCce---eeeecCCCCcceEEeeccCCcceEEEeC
Q 014064          160 GLSGIKSLRSLTLCAVNVTG---EVVEFFIHNCPLLENLRITQSPDLLS---LKVVGSSIPLKCLDIQFCYSIKEIEISA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~---l~i~~~~~~L~~L~l~~c~~l~~i~i~a  233 (431)
                      .+.+||+|++..|+...|..   +.+..++++...|+.|.|.+|- ++.   -+|.   +.|.+|...      .=.-++
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig---kal~~la~n------KKaa~k  156 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG---KALFHLAYN------KKAADK  156 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH---HHHHHHHHH------hhhccC
Confidence            34578888888888887764   3477888888888888888883 221   1222   234444321      112357


Q ss_pred             CceeEEEEeceee-e-------eecCCCCCceeEEEEeecCcch-hhH-HHhhhccCCCceEEEeeeceeeec------c
Q 014064          234 PNLLSFKYIGQDI-N-------LHVGSLPQLVDVVFHVTPMVQK-MHC-IGSIVSYLPQLKTLELDGCNEVFA------Q  297 (431)
Q Consensus       234 p~L~~L~~~~~~~-~-------~~~~~~~~L~~l~i~~~~~~~~-~~~-~~~~~~~~~~l~~L~l~~~~~~~~------~  297 (431)
                      |.|+.+....+.. .       ..+.+-..|..+++..+..... ... +.--+..+.+|+.|++.... ...      .
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La  235 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLA  235 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHH
Confidence            8888887654322 1       1122335788888886654321 122 12334567899999998766 221      1


Q ss_pred             cccccCCCccEEEEEEeecCcccHHHHHHHHh--hCCCcceEEEEee
Q 014064          298 FSQREFPKLMNLNISFTAANQETLLGLSFIMK--ACPFLEKLVLQIW  342 (431)
Q Consensus       298 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~--~~p~L~~L~i~~~  342 (431)
                      ...+..++|++|.+.-|.-+......+..-+.  ..|+|..|..++.
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence            12223678999998776554444433333222  2588888877664

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.84  E-value=0.06  Score=46.33  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             CCCCCCEEEEeeE-EEcchhHHHHHhcCCccceeeeccCCCC
Q 014064          163 GIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDL  203 (431)
Q Consensus       163 ~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~  203 (431)
                      +++.++.|.+..| .++|..++.+-...|+|++|.|.+|..+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rI  164 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRI  164 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCee
Confidence            3444445555555 3333334444444555555555555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=89.61  E-value=0.012  Score=49.18  Aligned_cols=155  Identities=21%  Similarity=0.221  Sum_probs=75.2

Q ss_pred             CCCCCCCCCEEEEeeEEEcc--hhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCcee
Q 014064          160 GLSGIKSLRSLTLCAVNVTG--EVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLL  237 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~  237 (431)
                      ++..+.+.+.|+|++..++.  ..    ++...+||.|.+.+...-+...-.+++++|++|.+.-..    +.+      
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppn----ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr----l~~------   93 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPN----IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR----LNI------   93 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCc----HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh----hhc------
Confidence            34556677777777765542  12    233346667766655321111112234556655543111    100      


Q ss_pred             EEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064          238 SFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  317 (431)
Q Consensus       238 ~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (431)
                              .+--+|++|.|+-+.+.++...+.  ++.+-+..+..|+.|-+++.. .  ..+|....+|+.|++-...  
T Consensus        94 --------lprgfgs~p~levldltynnl~e~--~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lr--  158 (264)
T KOG0617|consen   94 --------LPRGFGSFPALEVLDLTYNNLNEN--SLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLR--  158 (264)
T ss_pred             --------CccccCCCchhhhhhccccccccc--cCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeec--
Confidence                    011245566666655555433221  000000112223333343333 1  2456667788888853321  


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEeec
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQIWN  343 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~~~  343 (431)
                      +.+...+..=++....|++|+|++..
T Consensus       159 dndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  159 DNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             cCchhhCcHHHHHHHHHHHHhcccce
Confidence            24555666677777888999888754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=89.47  E-value=0.17  Score=53.49  Aligned_cols=54  Identities=13%  Similarity=0.125  Sum_probs=26.2

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  224 (431)
                      ++|+.|.|.++.+..  +..-+  ...|+.|.+.++. ++.+.-. -.++|+.|.+++|.
T Consensus       241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N~-L~~LP~~-l~~sL~~L~Ls~N~  294 (754)
T PRK15370        241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHNK-ISCLPEN-LPEELRYLSVYDNS  294 (754)
T ss_pred             ccccEEECcCCccCc--CChhH--hCCCCEEECcCCc-cCccccc-cCCCCcEEECCCCc
Confidence            467777777765542  11111  1356777766442 2222110 11356666666553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=89.37  E-value=0.96  Score=39.18  Aligned_cols=80  Identities=20%  Similarity=0.192  Sum_probs=49.3

Q ss_pred             CCCCCCCCEEEEeeEEEcc--hhHHHHHhcCCccceeeeccCCC--CceeeeecCCCCcceEEeeccC-----CcceEEE
Q 014064          161 LSGIKSLRSLTLCAVNVTG--EVVEFFIHNCPLLENLRITQSPD--LLSLKVVGSSIPLKCLDIQFCY-----SIKEIEI  231 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~--~~~l~i~~~~~~L~~L~l~~c~-----~l~~i~i  231 (431)
                      +.++++|.+|.|....++.  ..+..   -.|+|..|.|.+..-  +..+.-..+||+|+.|++-+.+     ++....+
T Consensus        60 lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl  136 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL  136 (233)
T ss_pred             CCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence            4477889999998887763  33433   357888888877542  3344434466777777776543     2333444


Q ss_pred             e-CCceeEEEEec
Q 014064          232 S-APNLLSFKYIG  243 (431)
Q Consensus       232 ~-ap~L~~L~~~~  243 (431)
                      . -|+|+.|++.+
T Consensus       137 ~klp~l~~LDF~k  149 (233)
T KOG1644|consen  137 YKLPSLRTLDFQK  149 (233)
T ss_pred             EecCcceEeehhh
Confidence            3 36666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=88.51  E-value=0.23  Score=52.50  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=15.7

Q ss_pred             CCceEEEeeeceeeeccccccc-CCCccEEEEEE
Q 014064          281 PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF  313 (431)
Q Consensus       281 ~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~  313 (431)
                      ++|+.|.++.+. +.  .+|.. .++|+.|.++.
T Consensus       325 ~sL~~L~Ls~N~-Lt--~LP~~l~~sL~~L~Ls~  355 (754)
T PRK15370        325 PGLKTLEAGENA-LT--SLPASLPPELQVLDVSK  355 (754)
T ss_pred             ccceeccccCCc-cc--cCChhhcCcccEEECCC
Confidence            466666665554 22  12222 34667766654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.59  E-value=2.1  Score=38.94  Aligned_cols=125  Identities=19%  Similarity=0.172  Sum_probs=72.8

Q ss_pred             HHhhhccCCCceEEEeeeceeeeccc------ccccCCCccEEEEEEeecCcccHHHHHHHH---------hhCCCcceE
Q 014064          273 IGSIVSYLPQLKTLELDGCNEVFAQF------SQREFPKLMNLNISFTAANQETLLGLSFIM---------KACPFLEKL  337 (431)
Q Consensus       273 ~~~~~~~~~~l~~L~l~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll---------~~~p~L~~L  337 (431)
                      +...+..||++++..++... +....      +.+.-.+|++|.++.++-+......+..-|         .+-|.|+++
T Consensus        84 Ll~aLlkcp~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v  162 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV  162 (388)
T ss_pred             HHHHHhcCCcceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence            33666788999998887765 22111      122256888888887755543333333222         346888887


Q ss_pred             EEEeeccccccCCCCccccc-CccCCccEEEEeeeecCchh--HHHHHHHHhcCcccccEEEEeCCC
Q 014064          338 VLQIWNNGRRIGKKRHQISK-HSHQHLKLVELQGFNGREID--FELAFYVFENATMLEKMIIKPSGS  401 (431)
Q Consensus       338 ~i~~~~~~~~~~~~~~~~~~-~~~~~L~~v~i~~~~g~~~e--~~l~~~ll~~a~~Le~m~i~~~~~  401 (431)
                      .........  +....|-.. -++..|++|+|+. .|-..+  ..++-+=+.++..||.+.++-..-
T Consensus       163 icgrNRlen--gs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         163 ICGRNRLEN--GSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             Eeccchhcc--CcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence            765432111  000011111 1336899999984 344333  456666678999999998886653

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.38  E-value=0.33  Score=26.82  Aligned_cols=17  Identities=24%  Similarity=0.643  Sum_probs=13.5

Q ss_pred             CCccceeeeccCCCCce
Q 014064          189 CPLLENLRITQSPDLLS  205 (431)
Q Consensus       189 cp~Le~L~L~~~~~~~~  205 (431)
                      ||+|++|.|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            78888888888887654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=86.12  E-value=0.2  Score=53.89  Aligned_cols=102  Identities=23%  Similarity=0.208  Sum_probs=53.2

Q ss_pred             CCCCCCCEEEEeeEEE-cchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCc---e
Q 014064          162 SGIKSLRSLTLCAVNV-TGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPN---L  236 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~---L  236 (431)
                      ..+|.|++|-+.+... -...-..++...|.|..|+|.+|..+..+ +..+.+-+||.|.++++. +..+...-.+   |
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL  620 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence            4567888888887742 11112334667888889998887654432 112233566766766654 3333333333   3


Q ss_pred             eEEEEecee----eeeecCCCCCceeEEEEee
Q 014064          237 LSFKYIGQD----INLHVGSLPQLVDVVFHVT  264 (431)
Q Consensus       237 ~~L~~~~~~----~~~~~~~~~~L~~l~i~~~  264 (431)
                      .+|++....    .+.....+++|+.+.+...
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeecc
Confidence            333333221    1112223566666665543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=85.87  E-value=0.26  Score=51.88  Aligned_cols=84  Identities=23%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             CCCCCCCCCEEEEeeEEEcc---hhHHH------H-------------HhcCCccceeeeccCCCCceeeeecCCCCcce
Q 014064          160 GLSGIKSLRSLTLCAVNVTG---EVVEF------F-------------IHNCPLLENLRITQSPDLLSLKVVGSSIPLKC  217 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~---~~l~~------l-------------l~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~  217 (431)
                      .+.+|++||.|+|.+.++..   ..+.+      +             +..|+.|+.|...+.......++. .+++|+.
T Consensus       378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~-~l~qL~~  456 (1081)
T KOG0618|consen  378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA-QLPQLKV  456 (1081)
T ss_pred             hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhh-hcCcceE
Confidence            45688999999999986542   11111      1             233444444444333211111111 2367777


Q ss_pred             EEeeccCCcceEEEe----CCceeEEEEecee
Q 014064          218 LDIQFCYSIKEIEIS----APNLLSFKYIGQD  245 (431)
Q Consensus       218 L~l~~c~~l~~i~i~----ap~L~~L~~~~~~  245 (431)
                      ++++. .++..+.+.    .|+|++|+++|..
T Consensus       457 lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  457 LDLSC-NNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             Eeccc-chhhhhhhhhhCCCcccceeeccCCc
Confidence            77763 335554432    3799999999874

>PF13013 F-box-like_2: F-box-like domain

Probab=84.74  E-value=1.1  Score=34.86  Aligned_cols=30  Identities=13%  Similarity=-0.065  Sum_probs=26.1

Q ss_pred             cCCCCCHHHHHHHHhcCChHHHHHHHHHhh
Q 014064           23 WFSRFPDDILIHIISGLTLKEAARTSVLSS   52 (431)
Q Consensus        23 ~is~LPd~lL~~Ils~L~~~~~~r~s~vSr   52 (431)
                      .+.+||+||+..|+.+-...+...+...++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            477899999999999999988877777766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=84.61  E-value=0.26  Score=51.84  Aligned_cols=167  Identities=19%  Similarity=0.139  Sum_probs=76.5

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCce
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL  236 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L  236 (431)
                      +|.++..+.+|+.|.+++..+..-  ...+..|..++.+...+......  +..  .+.|++.+....-...+.++--++
T Consensus       106 lP~~~~~lknl~~LdlS~N~f~~~--Pl~i~~lt~~~~~~~s~N~~~~~--lg~--~~ik~~~l~~n~l~~~~~~~i~~l  179 (1081)
T KOG0618|consen  106 LPASISELKNLQYLDLSFNHFGPI--PLVIEVLTAEEELAASNNEKIQR--LGQ--TSIKKLDLRLNVLGGSFLIDIYNL  179 (1081)
T ss_pred             CchhHHhhhcccccccchhccCCC--chhHHhhhHHHHHhhhcchhhhh--hcc--ccchhhhhhhhhcccchhcchhhh
Confidence            456666777888888887766542  22244444555555444411111  111  123444433322222333333344


Q ss_pred             eE-EEEeceeee-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEe
Q 014064          237 LS-FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFT  314 (431)
Q Consensus       237 ~~-L~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  314 (431)
                      +. ++++...+. ..+..+++|+.+...-....       .+-...++++.|....+. +........-.||+++.++..
T Consensus       180 ~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls-------~l~~~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~n  251 (1081)
T KOG0618|consen  180 THQLDLRYNEMEVLDLSNLANLEVLHCERNQLS-------ELEISGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISHN  251 (1081)
T ss_pred             heeeecccchhhhhhhhhccchhhhhhhhcccc-------eEEecCcchheeeeccCc-ceeeccccccccceeeecchh
Confidence            43 444444332 23334444444443311111       222344555555554444 221111111346667666543


Q ss_pred             ecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          315 AANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       315 ~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                           ....+...+..|++|+.|.+...
T Consensus       252 -----~l~~lp~wi~~~~nle~l~~n~N  274 (1081)
T KOG0618|consen  252 -----NLSNLPEWIGACANLEALNANHN  274 (1081)
T ss_pred             -----hhhcchHHHHhcccceEecccch
Confidence                 22334567777778877776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=84.56  E-value=1.3  Score=43.12  Aligned_cols=134  Identities=17%  Similarity=0.278  Sum_probs=74.4

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCC-ccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCP-LLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY  241 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  241 (431)
                      .++++++|.++++.+..  +.    ..| .|++|.+.+|..++.+.-.. .++|+.|.+.+|..+..+   .++|+.|.+
T Consensus        50 ~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sL---P~sLe~L~L  119 (426)
T PRK15386         50 EARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGL---PESVRSLEI  119 (426)
T ss_pred             HhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccc---ccccceEEe
Confidence            35788888888774332  11    223 58888888887765432111 157888888888655432   356777777


Q ss_pred             eceeeeeecCCC-CCceeEEEEeecCcchhhHHHhhhccC-CCceEEEeeeceeeeccccccc-CCCccEEEEEEe
Q 014064          242 IGQDINLHVGSL-PQLVDVVFHVTPMVQKMHCIGSIVSYL-PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFT  314 (431)
Q Consensus       242 ~~~~~~~~~~~~-~~L~~l~i~~~~~~~~~~~~~~~~~~~-~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~  314 (431)
                      .+.... .+..+ ++|+++.+.......    ...+...+ ++|+.|.+.++...   .+|.. ..+|++|.++..
T Consensus       120 ~~n~~~-~L~~LPssLk~L~I~~~n~~~----~~~lp~~LPsSLk~L~Is~c~~i---~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        120 KGSATD-SIKNVPNGLTSLSINSYNPEN----QARIDNLISPSLKTLSLTGCSNI---ILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CCCCCc-ccccCcchHhheecccccccc----ccccccccCCcccEEEecCCCcc---cCcccccccCcEEEeccc
Confidence            654322 12333 356766653211000    00111223 48999999876621   22322 357888887543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.54  E-value=0.1  Score=47.16  Aligned_cols=73  Identities=22%  Similarity=0.290  Sum_probs=38.1

Q ss_pred             cceEEeeccCCcceEEE--eCCceeEEEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeee
Q 014064          215 LKCLDIQFCYSIKEIEI--SAPNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDG  290 (431)
Q Consensus       215 L~~L~l~~c~~l~~i~i--~ap~L~~L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~  290 (431)
                      .+.|...+|. +..|.|  .+|.|+.|.++-+.+.  -.+..|.+|+++.+.-+...+ ++-+ ..+.++|+|+.|-|..
T Consensus        21 vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s-ldEL-~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   21 VKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES-LDEL-EYLKNLPSLRTLWLDE   97 (388)
T ss_pred             hhhhcccCCC-ccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhccccc-HHHH-HHHhcCchhhhHhhcc
Confidence            4444444444 343333  3567777776654432  134567788887776433221 1111 3446667777776643

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.39  E-value=0.39  Score=41.51  Aligned_cols=61  Identities=16%  Similarity=0.244  Sum_probs=39.4

Q ss_pred             CCEEEEeeEEEcch-----hHHHHHhcCCccceeeeccCCCCceee---eecCCCCcceEEeeccCCcce
Q 014064          167 LRSLTLCAVNVTGE-----VVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKE  228 (431)
Q Consensus       167 L~~L~L~~~~~~~~-----~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~  228 (431)
                      .....+.-+..++.     .++. +.+++.++.|.+.+|..++...   +....++|+.|.|++|+.+.+
T Consensus        98 ~~~~~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen   98 ADNVKIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             CCcceEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            33444444444443     3433 6789999999999998776432   223447888888888885443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.80  E-value=0.19  Score=47.89  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=28.1

Q ss_pred             CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccc
Q 014064          303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG  345 (431)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~  345 (431)
                      +.||+.|++..     .+...+..++.+|.+|++|++.+.++.
T Consensus       504 m~nL~tLDL~n-----Ndlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  504 MRNLTTLDLQN-----NDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhcceeccCC-----CchhhCChhhccccceeEEEecCCccC
Confidence            55666666633     456678889999999999999886543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=82.69  E-value=0.6  Score=47.43  Aligned_cols=39  Identities=23%  Similarity=0.469  Sum_probs=36.2

Q ss_pred             CcCCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064           19 NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        19 ~~~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l   57 (431)
                      ...|.++.||-|+..+||++|+.++.+..+++|+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            457999999999999999999999999999999999864

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.14  E-value=0.031  Score=50.40  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=24.4

Q ss_pred             CCCCceeEEEEeecCcchhh--HHHhhhccCCCceEEEeee
Q 014064          252 SLPQLVDVVFHVTPMVQKMH--CIGSIVSYLPQLKTLELDG  290 (431)
Q Consensus       252 ~~~~L~~l~i~~~~~~~~~~--~~~~~~~~~~~l~~L~l~~  290 (431)
                      ++|+|+.+++.-++.++..+  |-...+..+|+|++|+-..
T Consensus        86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~  126 (388)
T KOG2123|consen   86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP  126 (388)
T ss_pred             cCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence            67777777777665544322  2226677788888876433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=81.38  E-value=1.6  Score=37.92  Aligned_cols=60  Identities=25%  Similarity=0.313  Sum_probs=42.3

Q ss_pred             CCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCCCc----eeeeecCCCCcceEEeecc
Q 014064          163 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLL----SLKVVGSSIPLKCLDIQFC  223 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~----~l~i~~~~~~L~~L~l~~c  223 (431)
                      -+|+|++|.|.+..+.. .+++. +.+||.|+.|.+.+...-.    ..-+....|+|+.|+..+-
T Consensus        86 ~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            56899999999987654 33444 7899999999998865321    2333444588888887653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=81.27  E-value=0.3  Score=43.77  Aligned_cols=57  Identities=23%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             CccceeeeccCCCCceeeeecCCCCcceEEeeccC-----CcceEEEeCCceeEEEEeceeee
Q 014064          190 PLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY-----SIKEIEISAPNLLSFKYIGQDIN  247 (431)
Q Consensus       190 p~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~-----~l~~i~i~ap~L~~L~~~~~~~~  247 (431)
                      -.|+.|.+.++...+...+. .+++||.|.++...     .+.-+...+|+|++++++|..+.
T Consensus        43 ~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34444445554322222222 23677777776542     12233445689999998888664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.09  E-value=0.49  Score=43.43  Aligned_cols=99  Identities=16%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             CCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCCC--Cc-eeeeecCCCCcceEEeeccC---CcceEEEeCCce
Q 014064          164 IKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPD--LL-SLKVVGSSIPLKCLDIQFCY---SIKEIEISAPNL  236 (431)
Q Consensus       164 ~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~--~~-~l~i~~~~~~L~~L~l~~c~---~l~~i~i~ap~L  236 (431)
                      ...|+.|.+-++.++. .++..+-+.|..+++|+|.+...  +. ...|...+|.|+.|.++..+   .+.....-..+|
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl  123 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL  123 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence            3467788899998875 46777778899999999987632  22 22334455778888877544   122222233467


Q ss_pred             eEEEEeceeeee-----ecCCCCCceeEEEE
Q 014064          237 LSFKYIGQDINL-----HVGSLPQLVDVVFH  262 (431)
Q Consensus       237 ~~L~~~~~~~~~-----~~~~~~~L~~l~i~  262 (431)
                      +.+.+.|...++     .+...|.+++++++
T Consensus       124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS  154 (418)
T KOG2982|consen  124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMS  154 (418)
T ss_pred             EEEEEcCCCCChhhhhhhhhcchhhhhhhhc
Confidence            777777765432     23345555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 49/382 (12%), Positives = 124/382 (32%), Gaps = 63/382 (16%)

Query: 24  FSRFPDDILIHIISGLT----LKEAARTSVLSSRWKYL-WTFTTSLDFDKKVKYMSFPPD 78
                DD++  +++ +T       A+       RW  +       +         +  PD
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLV---CRRWFKIDSETREHVTMA---LCYTATPD 66

Query: 79  YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFE-LDLS 137
               ++ +   + L+L    R       F L  ++         T I+ N+R  + +   
Sbjct: 67  RLSRRFPNL--RSLKLKGKPRAA----MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFR 120

Query: 138 PGTYDNY--YEIPQECYKNLQ----SGC------GLSGI----KSLRSLTL---CAVNVT 178
                +     + +    +L+      C      GL  I    + +++L +         
Sbjct: 121 RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 179 GEVVEFFIHNCPLLENLRITQSP----DLLSLKVVGSSIP-LKCLDIQFCYSIKEIEI-- 231
           G+ +     +   LE L    +         L+ +  +   L  + +     ++ +    
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240

Query: 232 SAPNL-------LSFKYIGQDINLHVGSLPQLVDV-VFHVTPMVQKMHCIGSIVSYLPQL 283
           +A NL       L+      +  +++    +L  + + ++ P     + +  +  +  Q+
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-----NEMPILFPFAAQI 295

Query: 284 KTLELDGCNEVFAQFSQ--REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 341
           + L+L              ++ P L  L       N     GL  + + C  L++L ++ 
Sbjct: 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR----NVIGDRGLEVLAQYCKQLKRLRIER 351

Query: 342 WNNGRRIGKKRHQISKHSHQHL 363
             + + +  +   +S+     L
Sbjct: 352 GADEQGMEDEEGLVSQRGLIAL 373

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 38/209 (18%)

Query: 165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIP-LKCLDIQFC 223
             +R L L    +  E     I  CP LE L          L+V+      LK L I+  
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 224 YSIKEIEISAPNL--LSFKYIG------QDINLH------------VGSLPQL------- 256
              + +E     +       +       + + ++               L  L       
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

Query: 257 VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGC-----NEVFAQFSQREFPKLMNLNI 311
           +D    +T +    + + S++    +L+            +   +   Q   P +  + +
Sbjct: 413 LDREERITDLPLD-NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY-SPNVRWMLL 470

Query: 312 SFTAANQETLLGLSFIMKACPFLEKLVLQ 340
            +     E+  GL    + CP L+KL ++
Sbjct: 471 GYV---GESDEGLMEFSRGCPNLQKLEMR 496

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 38/250 (15%), Positives = 72/250 (28%), Gaps = 52/250 (20%)

Query: 115 CNITNWVNTAIAKNVRNF-ELDLS-----PGTYDNYYEIPQECYKNLQSGCGLSGIKSLR 168
             I +     +A+  +    L +       G  D    + Q     L  GC     + L 
Sbjct: 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-----QELE 381

Query: 169 SLTLCAVNVTGEVVEFFIHNCPLLENLR---------ITQSPDLLSLKVVGSSIP-LKCL 218
            + +   ++T E +E        L + R         IT  P    ++ +      L+  
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441

Query: 219 DIQFC------YSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHC 272
                        +  I   +PN+       + + L         D              
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNV-------RWMLL---GYVGESDE------------G 479

Query: 273 IGSIVSYLPQLKTLELDGCN--EVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKA 330
           +       P L+ LE+ GC   E     +  + P L  L +    A+  T   L  + + 
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM-TGQDLMQMARP 538

Query: 331 CPFLEKLVLQ 340
              +E +  +
Sbjct: 539 YWNIELIPSR 548

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 59/332 (17%), Positives = 106/332 (31%), Gaps = 61/332 (18%)

Query: 24  FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSK 83
           +   PD++L+ I S L L E  + S +  RW Y      SL     +   +  PD     
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRW-YRLASDESLWQTLDLTGKNLHPD----- 62

Query: 84  YISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDN 143
                  V        +  FR              +          R   +DLS      
Sbjct: 63  -------VTGRLLSQGVIAFRCPRSF--------MDQPLAEHFSPFRVQHMDLS------ 101

Query: 144 YYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDL 203
              I       + S C       L++L+L  + ++  +V   +     L  L ++     
Sbjct: 102 NSVIEVSTLHGILSQC-----SKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGF 155

Query: 204 --LSLKVVGSSIP-LKCLDIQFCYSIKEIEISA------PNL--LSFKYIGQDINLH--- 249
              +L+ + SS   L  L++ +C+   E  +          +  L+     +++      
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 250 --VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEV----FAQFSQREF 303
             V   P LV +    + M+ K  C       L  L+ L L  C ++      +  +   
Sbjct: 216 TLVRRCPNLVHLDLSDSVML-KNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE--I 271

Query: 304 PKLMNLNISFTAANQETLLGLSFIMKACPFLE 335
           P L  L +            L  + +A P L+
Sbjct: 272 PTLKTLQVFGIV----PDGTLQLLKEALPHLQ 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 66/452 (14%), Positives = 125/452 (27%), Gaps = 147/452 (32%)

Query: 7   HISEDAPEKQ---KENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTS 63
           H+  +  E Q   K+ L  +   F D+     +  +        S+LS            
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILSKE---------- 49

Query: 64  LDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNT 123
            + D  +           +  + W    L   +   + +F     ++   + N   ++ +
Sbjct: 50  -EIDHIIMS---KDAVSGTLRLFWT---LLSKQEEMVQKF-----VEEVLRINY-KFLMS 96

Query: 124 AIAK-------NVRNFELDLSPGTYDNY----YEIP--------QECYKNLQSG-----C 159
            I           R +         DN     Y +         ++    L+        
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 160 GLSGI-KSLRSLTLCAVNVTGEVVEFF---IH-------NCP-----LLENLRITQSPDL 203
           G+ G  K+   + L     + +V       I        N P     +L+ L     P+ 
Sbjct: 157 GVLGSGKT--WVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 204 LSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLV--DV-- 259
            S     S+I L+   IQ      E+      LL  K        +   L  LV  +V  
Sbjct: 214 TSRSDHSSNIKLRIHSIQ-----AELR----RLLKSK-------PYENCL--LVLLNVQN 255

Query: 260 -----VFHVTPMVQKMHCIGSIVSYLPQLKTLEL--DGCNEVFAQFSQREFPKLMNLNIS 312
                 F++        C           K L          F   +      L + +++
Sbjct: 256 AKAWNAFNL-------SC-----------KILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 313 FTAANQETLLGLSFIMK-------AC---PFLEKLV-------LQIWNNGRRIGKKR-HQ 354
            T    ++LL      +            P    ++       L  W+N + +   +   
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 355 ISKHSHQHLKLVELQGFNGREIDFELAFYVFE 386
           I + S   L+  E +        F+    VF 
Sbjct: 358 IIESSLNVLEPAEYRKM------FD-RLSVFP 382

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 4e-08
 Identities = 67/436 (15%), Positives = 134/436 (30%), Gaps = 124/436 (28%)

Query: 5   ARHISEDAPEKQKENLEDWFSRF------PDDILI-------HIISGLTLKEAARTSVLS 51
           +R       + +  +++    R        + +L+          +   L    +  +L+
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKI-LLT 271

Query: 52  SRWKYLWTFTTSLDFDKKVKY------MSFPPDYQQSKYISWVN-KVLEL-HRGSRINQF 103
           +R+K +   T  L              M+  PD  +S  + +++ +  +L       N  
Sbjct: 272 TRFKQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 104 RICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSG 163
           R+                   IA+++R+        T+DN+  +  +    +        
Sbjct: 329 RLSI-----------------IAESIRDG-----LATWDNWKHVNCDKLTTIIE------ 360

Query: 164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC 223
             SL  L         E  + F       + L +   P         + IP   L + + 
Sbjct: 361 -SSLNVLE------PAEYRKMF-------DRLSVF--PP-------SAHIPTILLSLIWF 397

Query: 224 YSIK-EIEISAPNLLSFKYIGQDINLHVGSLPQL-VDVVFHVTPMVQKMHCIGSIVSYLP 281
             IK ++ +    L  +  + +       S+P + +++   +      +H   SIV +  
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LH--RSIVDHYN 454

Query: 282 QLKTLELDGCNEV-----FAQF----------SQR--EFPKLMNLNISF---------TA 315
             KT + D          F              +R   F  +  L+  F         TA
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTA 513

Query: 316 ANQ-----ETLLGL----SFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLV 366
            N       TL  L     +I    P  E+LV  I +   +I +          ++  L+
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-----LICSKYTDLL 568

Query: 367 ELQGFNGREIDFELAF 382
            +      E  FE A 
Sbjct: 569 RIALMAEDEAIFEEAH 584

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 59/374 (15%), Positives = 112/374 (29%), Gaps = 86/374 (22%)

Query: 21  EDWFSRFPDDILIHIISGLT----LKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFP 76
           +     FP+++L H+ S +         +        W  +              Y   P
Sbjct: 3   KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVC---KSWYEIE-RWCRRKVFIGNCYAVSP 58

Query: 77  P------------DYQQSKYISWVNKVLELHRGSRINQFRICF-------RLDAKHKCNI 117
                        + +   + +  N V +   G                  +  K    +
Sbjct: 59  ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR-MVV 117

Query: 118 TNWVNTAIAKNVRNFE-LDLS--PG-TYDNYYEIPQECYKNLQ----SGCGLSGI----- 164
           T+     IAK+ +NF+ L LS   G + D    I   C +NL+        +  +     
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWL 176

Query: 165 -------KSLRSLTL--CAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIP- 214
                   SL SL +   A  V+   +E  +  CP L++L++ ++  L  L  +    P 
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236

Query: 215 LKCLDIQFCYSI------KEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQ 268
           L+ L      +         + ++       + +    +     LP              
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP-------------- 282

Query: 269 KMHCIGSIVSYLPQLKTLELDGCN---EVFAQFSQREFPKLMNLNISFTAANQETLLGLS 325
                 ++ S   +L TL L           +   +  PKL  L +     +     GL 
Sbjct: 283 ------AVYSVCSRLTTLNLSYATVQSYDLVKLLCQ-CPKLQRLWVL----DYIEDAGLE 331

Query: 326 FIMKACPFLEKLVL 339
            +   C  L +L +
Sbjct: 332 VLASTCKDLRELRV 345

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 34/197 (17%)

Query: 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL----------SLKVVG 210
           L     L+ L +    +    +E     C  L  LR+  S   +           L  V 
Sbjct: 310 LCQCPKLQRLWVLD-YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368

Query: 211 SSIPLKCLDIQFCY-----SIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 265
              P     + FC      ++  I  + PN+  F+    +         + +D+      
Sbjct: 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI------ 422

Query: 266 MVQKMHCIGSIVSYLPQLKTLELDGC--NEVFAQFSQREFPKLMNLNISFTAANQETLLG 323
                   G+IV +   L+ L L G   ++VF         K+  L+++F     ++ LG
Sbjct: 423 ------GFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTY-AKKMEMLSVAFA---GDSDLG 472

Query: 324 LSFIMKACPFLEKLVLQ 340
           +  ++  C  L KL ++
Sbjct: 473 MHHVLSGCDSLRKLEIR 489

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 35/258 (13%), Positives = 82/258 (31%), Gaps = 56/258 (21%)

Query: 106 CFRLDAKHKCN-ITNWVNTAIAKNVRNFE-LDLS---PGTYDNYYEIPQECYKNLQSGCG 160
           C +L      + I +     +A   ++   L +    P   +    + ++   ++  GC 
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC- 371

Query: 161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRI----TQSPDLLSLKVVGSSIP-- 214
                 L S+      +T   +     N P +   R+     ++PD L+L+ +       
Sbjct: 372 ----PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

Query: 215 ------LKCLDIQFC---YSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 265
                 L+ L +         + I   A  +       + +++   +     D+      
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM-------EMLSV---AFAGDSDL------ 471

Query: 266 MVQKMHCIGSIVSYLPQLKTLELDGCN----EVFAQFSQREFPKLMNLNISFTAANQETL 321
                  +  ++S    L+ LE+  C      + A  S+     + +L +S       + 
Sbjct: 472 ------GMHHVLSGCDSLRKLEIRDCPFGDKALLANASK--LETMRSLWMSSC---SVSF 520

Query: 322 LGLSFIMKACPFLEKLVL 339
                + +  P L   V+
Sbjct: 521 GACKLLGQKMPKLNVEVI 538

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 215 LKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIG 274
           ++ ++++      +  +       + Y    I     S   L ++   +  MV    C+ 
Sbjct: 68  VRSVELKGKPHFADFNLVPDGWGGYVYPW--IEAMSSSYTWLEEI--RLKRMVVTDDCLE 123

Query: 275 SIVSYLPQLKTLELDGCNEV----FAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKA 330
            I       K L L  C        A  +      L  L++  +  +  +   LS     
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-CRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 331 CPFLEKLVLQ 340
              L  L + 
Sbjct: 183 YTSLVSLNIS 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.8
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.77
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.77
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.4
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.37
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.32
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.3
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.2
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.03
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.03
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.01
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.01
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.92
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.91
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.89
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.82
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.78
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.74
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.7
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.67
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.64
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.63
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.57
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.56
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.52
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.49
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.46
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.4
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.34
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.33
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.33
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.32
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.24
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.03
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.02
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	96.98
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.95
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.79
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.78
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.38
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.34
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.3
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.24
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.01
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	95.95
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.0
3e6j_A	229	Variable lymphocyte receptor diversity region; var	94.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	94.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	93.77
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	93.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	92.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	92.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	92.06
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	91.99
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	91.98
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	91.9
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	91.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	90.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	89.73
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	87.09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	86.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	86.08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	83.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	82.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	82.07
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	80.34

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.83  E-value=6.5e-20  Score=187.85  Aligned_cols=152  Identities=14%  Similarity=0.197  Sum_probs=89.8

Q ss_pred             CCcCCCCCHHHHHHHHhcCC-hHHHHHHHHHhhhhhhccc-ccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCCC
Q 014064           21 EDWFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWT-FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGS   98 (431)
Q Consensus        21 ~D~is~LPd~lL~~Ils~L~-~~~~~r~s~vSrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~   98 (431)
                      .|+|+.||||||.+||+||| .+|+++++.|||||+++.. ....+++... ...     . .       ...+...  +
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~~-----~-~-------~~~~~~~--~   66 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNC-YAV-----S-P-------ATVIRRF--P   66 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESST-TSS-----C-H-------HHHHHHC--T
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccc-ccc-----C-H-------HHHHhhC--C
Confidence            48999999999999999999 9999999999999998721 1223344322 110     0 0       1222222  3


Q ss_pred             CeeEEEEEEecCC--------CCCccHhHHHHHHhh--cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCC
Q 014064           99 RINQFRICFRLDA--------KHKCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLR  168 (431)
Q Consensus        99 ~l~~l~l~~~~~~--------~~~~~~~~wi~~~~~--~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~  168 (431)
                      .++++.+......        .....+..|+.....  .++++|++..+.........+.             .++++|+
T Consensus        67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-------------~~~~~L~  133 (594)
T 2p1m_B           67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA-------------KSFKNFK  133 (594)
T ss_dssp             TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-------------HHCTTCC
T ss_pred             CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH-------------HhCCCCc
Confidence            4888888653110        112456788887764  3899999976532211001111             1457777


Q ss_pred             EEEEeeE-EEcchhHHHHHhcCCccceeeeccCC
Q 014064          169 SLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       169 ~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      +|.|.++ .+++..+..++.+||+|++|.|.+|.
T Consensus       134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            7777777 55555566767777777777777664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.81  E-value=1e-18  Score=178.92  Aligned_cols=298  Identities=11%  Similarity=0.086  Sum_probs=147.8

Q ss_pred             CCcCC----CCCHHHHHHHHhcC-ChHHHHHHHHHhhhhhhcccccc-eeeeccCcccCCCCCchhHhHHHHHHHHHHHh
Q 014064           21 EDWFS----RFPDDILIHIISGL-TLKEAARTSVLSSRWKYLWTFTT-SLDFDKKVKYMSFPPDYQQSKYISWVNKVLEL   94 (431)
Q Consensus        21 ~D~is----~LPd~lL~~Ils~L-~~~~~~r~s~vSrrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   94 (431)
                      .|+++    .||||+|.+||+|| +.+|+++++.|||||++++.... .+.+...  +.            ..+..++..
T Consensus         6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~--~~------------~~~~~~~~~   71 (592)
T 3ogk_B            6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC--YT------------ATPDRLSRR   71 (592)
T ss_dssp             ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG--GG------------SCHHHHHHH
T ss_pred             hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec--cc------------cChHHHHHh
Confidence            45555    89999999999999 79999999999999999854332 1222111  11            112233333


Q ss_pred             cCCCCeeEEEEEEecC--------CCCCccHhHHHHHHhh--cCceEEEEEcCCCCCCCccc----cccccccccCC---
Q 014064           95 HRGSRINQFRICFRLD--------AKHKCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYE----IPQECYKNLQS---  157 (431)
Q Consensus        95 ~~~~~l~~l~l~~~~~--------~~~~~~~~~wi~~~~~--~~v~eL~l~~~~~~~~~~~~----lp~~~~~~l~l---  157 (431)
                      .+.  ++++.+.....        ....+....|+...+.  +++++|++............    +|. .+..+.+   
T Consensus        72 ~~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~-~L~~L~L~~~  148 (592)
T 3ogk_B           72 FPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARAD-DLETLKLDKC  148 (592)
T ss_dssp             CTT--CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGG-GCCEEEEESC
T ss_pred             CCC--CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccc-cCcEEECcCC
Confidence            332  88888855211        1123455667776653  37888888755322110000    111 0111110   


Q ss_pred             --------CCCCCCCCCCCEEEEeeEEEcchh---HHHHHhcCCccceeeeccCCCC--c--ee-eeecCCCCcceEEee
Q 014064          158 --------GCGLSGIKSLRSLTLCAVNVTGEV---VEFFIHNCPLLENLRITQSPDL--L--SL-KVVGSSIPLKCLDIQ  221 (431)
Q Consensus       158 --------p~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~~~--~--~l-~i~~~~~~L~~L~l~  221 (431)
                              +....++|+|++|.|.++.+++..   +..+..+||.|+.|.+.++..-  .  .+ .+...+++|+.|.+.
T Consensus       149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~  228 (592)
T 3ogk_B          149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG  228 (592)
T ss_dssp             EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred             CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence                    111124567777777766654332   4445555555555555443221  0  00 111234566666665


Q ss_pred             ccC------------CcceEEE----------------------------------------eCCceeEEEEeceeee--
Q 014064          222 FCY------------SIKEIEI----------------------------------------SAPNLLSFKYIGQDIN--  247 (431)
Q Consensus       222 ~c~------------~l~~i~i----------------------------------------~ap~L~~L~~~~~~~~--  247 (431)
                      +|.            .++.+.+                                        ..++|++|++.++...  
T Consensus       229 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~  308 (592)
T 3ogk_B          229 DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE  308 (592)
T ss_dssp             SCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred             CccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence            543            1111211                                        1345666666554321  


Q ss_pred             ---eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeee----------ceeeeccccc---ccCCCccEEEE
Q 014064          248 ---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDG----------CNEVFAQFSQ---REFPKLMNLNI  311 (431)
Q Consensus       248 ---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~----------~~~~~~~~~~---~~~~~L~~L~l  311 (431)
                         ..+..+++|+.+.+. ....  ...+..+...+++|+.|.+..          +..+....+.   ..+++|++|.+
T Consensus       309 ~~~~~~~~~~~L~~L~L~-~~~~--~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          309 DHCTLIQKCPNLEVLETR-NVIG--DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV  385 (592)
T ss_dssp             HHHHHHTTCTTCCEEEEE-GGGH--HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred             HHHHHHHhCcCCCEEecc-CccC--HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence               113456666666665 1111  111224455667777777763          3222221111   12567777766


Q ss_pred             EEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064          312 SFTAANQETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      .   +...+...+..+..+||+|++|.+..
T Consensus       386 ~---~~~l~~~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          386 Y---VSDITNESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             E---ESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred             e---cCCccHHHHHHHHhhCCCCcEEEEee
Confidence            2   22233344555556677777777754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=2.3e-17  Score=156.68  Aligned_cols=267  Identities=17%  Similarity=0.191  Sum_probs=139.2

Q ss_pred             CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhccc---ccceeeeccCcccCCCCCchhHhHHHHHHHHHHHhcCC
Q 014064           21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT---FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRG   97 (431)
Q Consensus        21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~   97 (431)
                      ...|+.||||++.+||++|+.+|+++++.|||+|+++..   ....+++... .+.       .    ..          
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~-------~----~~----------   63 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLH-------P----DV----------   63 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCC-------H----HH----------
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCC-------H----HH----------
Confidence            346899999999999999999999999999999999842   1223444333 111       0    11          


Q ss_pred             CCeeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEE
Q 014064           98 SRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNV  177 (431)
Q Consensus        98 ~~l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~  177 (431)
                                             +......+++.+++......               ..++...++++|++|+|.++.+
T Consensus        64 -----------------------~~~~~~~~l~~L~l~~n~l~---------------~~~~~~~~~~~L~~L~L~~~~l  105 (336)
T 2ast_B           64 -----------------------TGRLLSQGVIAFRCPRSFMD---------------QPLAEHFSPFRVQHMDLSNSVI  105 (336)
T ss_dssp             -----------------------HHHHHHTTCSEEECTTCEEC---------------SCCCSCCCCBCCCEEECTTCEE
T ss_pred             -----------------------HHhhhhccceEEEcCCcccc---------------ccchhhccCCCCCEEEccCCCc
Confidence                                   11122223333333211100               0011234678889999988888


Q ss_pred             cchhHHHHHhcCCccceeeeccCCCCce-eeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCc
Q 014064          178 TGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQL  256 (431)
Q Consensus       178 ~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L  256 (431)
                      ++..+..++..||+|+.|.|.+|...+. ...-..+++|++|.+.+|..+....               .+..+..+++|
T Consensus       106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~---------------l~~~~~~~~~L  170 (336)
T 2ast_B          106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA---------------LQTLLSSCSRL  170 (336)
T ss_dssp             CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH---------------HHHHHHHCTTC
T ss_pred             CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH---------------HHHHHhcCCCC
Confidence            7777888888889999999888853211 1112345788888888774222100               00112233444


Q ss_pred             eeEEEEee-cCcchhhHHHhhhccCC-CceEEEeeece-eeecccccc---cCCCccEEEEEEeecCcccHHHHHHHHhh
Q 014064          257 VDVVFHVT-PMVQKMHCIGSIVSYLP-QLKTLELDGCN-EVFAQFSQR---EFPKLMNLNISFTAANQETLLGLSFIMKA  330 (431)
Q Consensus       257 ~~l~i~~~-~~~~~~~~~~~~~~~~~-~l~~L~l~~~~-~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~ll~~  330 (431)
                      +.+.+..+ ...+  ..+...+..++ +|+.|.++++. .+....++.   .+++|++|.++.+...  +.. ....+..
T Consensus       171 ~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l--~~~-~~~~l~~  245 (336)
T 2ast_B          171 DELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML--KND-CFQEFFQ  245 (336)
T ss_dssp             CEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC--CGG-GGGGGGG
T ss_pred             CEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC--CHH-HHHHHhC
Confidence            44444322 1110  01224445566 66666666553 122222221   2566666666433110  111 1123456


Q ss_pred             CCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeee
Q 014064          331 CPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGF  371 (431)
Q Consensus       331 ~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~  371 (431)
                      +|+|++|++.....   ..+.+. ..-..+++|+.+.+.|.
T Consensus       246 l~~L~~L~l~~~~~---~~~~~~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          246 LNYLQHLSLSRCYD---IIPETL-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTCTT---CCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             CCCCCEeeCCCCCC---CCHHHH-HHHhcCCCCCEEeccCc
Confidence            67777777744320   011110 01122566777777665

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.82  E-value=2e-09  Score=71.88  Aligned_cols=38  Identities=32%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcc
Q 014064           21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW   58 (431)
Q Consensus        21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw   58 (431)
                      .+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999999999763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.80  E-value=1.2e-09  Score=111.31  Aligned_cols=83  Identities=16%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee---eeecCCCCcceEEeeccCC-------cceEEE
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYS-------IKEIEI  231 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~-------l~~i~i  231 (431)
                      ..+++|++|+|.++.+++..+..+...||+|+.|.|.+|..++..   .+...+++|++|.+.+|.-       +..+.-
T Consensus       102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            367999999999999888888887778999999999999654431   2222568899999887750       111222


Q ss_pred             eCCceeEEEEece
Q 014064          232 SAPNLLSFKYIGQ  244 (431)
Q Consensus       232 ~ap~L~~L~~~~~  244 (431)
                      ..|+|++|++.+.
T Consensus       182 ~~~~L~~L~l~~~  194 (594)
T 2p1m_B          182 TYTSLVSLNISCL  194 (594)
T ss_dssp             TCCCCCEEECTTC
T ss_pred             cCCcCcEEEeccc
Confidence            3457777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.77  E-value=1.2e-08  Score=96.14  Aligned_cols=170  Identities=21%  Similarity=0.248  Sum_probs=86.2

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE----------
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE----------  230 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~----------  230 (431)
                      +.++++|++|.|.+..+.  .+..-+..+++|+.|.|.++...........+++|+.|.+.+|.....+.          
T Consensus       100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            344566666666655544  12222455566666666655322111111234556666666554322211          


Q ss_pred             --EeCCceeEEEEeceeee---eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---
Q 014064          231 --ISAPNLLSFKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---  302 (431)
Q Consensus       231 --i~ap~L~~L~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---  302 (431)
                        -..++|+.|++.+..+.   -.++.+++|+.+.+..+.....    ..-+..+++|+.|.++.+. +. ..++..   
T Consensus       178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l----~~~l~~l~~L~~L~Ls~n~-~~-~~~p~~~~~  251 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL----GPAIHHLPKLEELDLRGCT-AL-RNYPPIFGG  251 (328)
T ss_dssp             CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC----CGGGGGCTTCCEEECTTCT-TC-CBCCCCTTC
T ss_pred             hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC----chhhccCCCCCEEECcCCc-ch-hhhHHHhcC
Confidence              12566777776665332   2345677777777775433311    1234667788888887655 11 122332   


Q ss_pred             CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      +++|++|.|..+...  .  .+..-+..+++|++|+|...
T Consensus       252 l~~L~~L~L~~n~~~--~--~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          252 RAPLKRLILKDCSNL--L--TLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             CCCCCEEECTTCTTC--C--BCCTTGGGCTTCCEEECTTC
T ss_pred             CCCCCEEECCCCCch--h--hcchhhhcCCCCCEEeCCCC
Confidence            556666666432111  1  12223567788888888553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.77  E-value=4.9e-08  Score=99.45  Aligned_cols=176  Identities=13%  Similarity=0.155  Sum_probs=101.5

Q ss_pred             CCCCCCEEEEeeEEEc---chhHHHHHhcCCccceeeeccCCC------------Cceeeee------------------
Q 014064          163 GIKSLRSLTLCAVNVT---GEVVEFFIHNCPLLENLRITQSPD------------LLSLKVV------------------  209 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~~~~------------~~~l~i~------------------  209 (431)
                      ++++|++|+|.+..++   ...+..++.+||+|+.|.|.+|..            ++.+.+.                  
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            5688888888877665   355777778888888888877631            1111111                  


Q ss_pred             --------------------cCCCCcceEEeeccCCcce-----EEEeCCceeEEEEecee----eeeecCCCCCceeEE
Q 014064          210 --------------------GSSIPLKCLDIQFCYSIKE-----IEISAPNLLSFKYIGQD----INLHVGSLPQLVDVV  260 (431)
Q Consensus       210 --------------------~~~~~L~~L~l~~c~~l~~-----i~i~ap~L~~L~~~~~~----~~~~~~~~~~L~~l~  260 (431)
                                          ..+++|++|.+.+|. +..     +.-..|+|+.|.+.+..    .......+++|+.+.
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence                                123567777777765 211     11235888888887431    112234578888888


Q ss_pred             EEe----------ecCcchhhHHHhhhccCCCceEEEeeeceeeecccc---cccCCCccEEEEEEee-cCccc----HH
Q 014064          261 FHV----------TPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---QREFPKLMNLNISFTA-ANQET----LL  322 (431)
Q Consensus       261 i~~----------~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~-~~~~~----~~  322 (431)
                      +.-          ...... ..+..+...+++|+.|.+.+.. +....+   ...+++|++|++.... +...+    ..
T Consensus       349 L~~g~~~~~~~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          349 IERGADEQGMEDEEGLVSQ-RGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EECCCCSSTTSSTTCCCCH-HHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             eecCccccccccccCccCH-HHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            872          111111 1122555678888888885444 332221   1226778888875421 11111    12


Q ss_pred             HHHHHHhhCCCcceEEEEe
Q 014064          323 GLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       323 ~l~~ll~~~p~L~~L~i~~  341 (431)
                      ++..++.+|++|++|.+..
T Consensus       427 ~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEEC
T ss_pred             HHHHHHHhCCCCCEEEEec
Confidence            4666777788888888854

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.62  E-value=7.4e-07  Score=84.58  Aligned_cols=216  Identities=12%  Similarity=0.106  Sum_probs=139.4

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee---eecCCCCcceEEeeccCCcceEEE----
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKEIEI----  231 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~---i~~~~~~L~~L~l~~c~~l~~i~i----  231 (431)
                      ..+.++++|++|.|.+..+++- ....+..+++|+.|.+.++... .+.   ....+++|+.|.+.++..+..+.-    
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             hhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence            3567889999999999887642 2344788999999999988532 221   233568999999999854555432    


Q ss_pred             eCCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc---c--cc
Q 014064          232 SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---Q--RE  302 (431)
Q Consensus       232 ~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---~--~~  302 (431)
                      ..++|+.|++.+....    ..+..+++|+.+.+..+....   .-..+...+++|+.|+++... +.....   .  ..
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~  247 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL---LLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGET  247 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT---HHHHHHHHTTTEEEEEEESCB-CTTCCCC------C
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc---chhhhhhhcccccEEECCCCc-cccccccccccccc
Confidence            2478999999876442    245678889998888554321   111445668999999998876 332111   1  11


Q ss_pred             CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccccc--CccCCccEEEEee--eecCchhH
Q 014064          303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK--HSHQHLKLVELQG--FNGREIDF  378 (431)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~--~~g~~~e~  378 (431)
                      ...++.+.+....-.......+...+..+++|++|++....-.       ..+..  ..+++|+.+.+.+  +.+....+
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-------~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-------SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-------ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            4567777775543332334456677899999999999654211       11221  2457899999988  44544445


Q ss_pred             HHHHHHHhc
Q 014064          379 ELAFYVFEN  387 (431)
Q Consensus       379 ~l~~~ll~~  387 (431)
                      ..+...+++
T Consensus       321 ~~l~~~~~~  329 (353)
T 2z80_A          321 DYLSRWLNK  329 (353)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.50  E-value=1.5e-07  Score=88.99  Aligned_cols=213  Identities=17%  Similarity=0.178  Sum_probs=114.8

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  238 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  238 (431)
                      +.++++|++|.|.++.+.+-.-   +..++.|+.|.+.+|.....+.....+++|+.|.+.+|. +..+.  -..++|+.
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence            4566777777777666544211   566777777777776544443333445667777776664 11111  12466777


Q ss_pred             EEEeceeee-e-ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064          239 FKYIGQDIN-L-HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  316 (431)
Q Consensus       239 L~~~~~~~~-~-~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  316 (431)
                      |++.+.... + .+..+++|+.+.+..+.....     ..+..+++|+.|.++++. +........+++|++|.++.+.-
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCC-----chhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCcc
Confidence            777665332 1 144566666666654332211     114667777777776665 32221122366777777654321


Q ss_pred             CcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEE
Q 014064          317 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII  396 (431)
Q Consensus       317 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i  396 (431)
                        ...    ..+..+|+|++|.+....-    ..   ++.-....+|+.+.+.+..-......    .+.+.+.|+++.+
T Consensus       256 --~~~----~~~~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L  318 (347)
T 4fmz_A          256 --SDI----NAVKDLTKLKMLNVGSNQI----SD---ISVLNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFL  318 (347)
T ss_dssp             --CCC----GGGTTCTTCCEEECCSSCC----CC---CGGGGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEEC
T ss_pred             --CCC----hhHhcCCCcCEEEccCCcc----CC---ChhhcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEc
Confidence              111    2356777787777754311    10   11123456788887777543332222    2456788888877


Q ss_pred             EeCC
Q 014064          397 KPSG  400 (431)
Q Consensus       397 ~~~~  400 (431)
                      ....
T Consensus       319 ~~n~  322 (347)
T 4fmz_A          319 SQNH  322 (347)
T ss_dssp             CSSS
T ss_pred             cCCc
Confidence            7654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.42  E-value=4.5e-08  Score=94.25  Aligned_cols=206  Identities=17%  Similarity=0.149  Sum_probs=115.6

Q ss_pred             CCCCCCCCEEEEeeEEEc---c---hh---HHHHHhcCCccceeeeccCCCCc----ee-eeecCCCCcceEEeeccCCc
Q 014064          161 LSGIKSLRSLTLCAVNVT---G---EV---VEFFIHNCPLLENLRITQSPDLL----SL-KVVGSSIPLKCLDIQFCYSI  226 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~---~---~~---l~~ll~~cp~Le~L~L~~~~~~~----~l-~i~~~~~~L~~L~l~~c~~l  226 (431)
                      +..+++|++|.|.++.+.   +   ..   +...+..+++|+.|.|.++..-.    .+ .....+++|++|.+.+|. +
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence            456788888888887433   1   12   33345778888888888875322    11 111345788888888876 2


Q ss_pred             ceE---EEe-C-------------CceeEEEEeceeee--------eecCCCCCceeEEEEeecCcc-hhhHHHh-hhcc
Q 014064          227 KEI---EIS-A-------------PNLLSFKYIGQDIN--------LHVGSLPQLVDVVFHVTPMVQ-KMHCIGS-IVSY  279 (431)
Q Consensus       227 ~~i---~i~-a-------------p~L~~L~~~~~~~~--------~~~~~~~~L~~l~i~~~~~~~-~~~~~~~-~~~~  279 (431)
                      ...   .+. +             |+|++|.+.++.+.        -.+..+++|+.+.+..+.... ....+.. .+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            110   011 1             78888888766432        123356788888777543321 1111223 5677


Q ss_pred             CCCceEEEeeeceeeec---cccc---ccCCCccEEEEEEeecCcccHHHHHHHHhh--CCCcceEEEEeeccccccCCC
Q 014064          280 LPQLKTLELDGCNEVFA---QFSQ---REFPKLMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQIWNNGRRIGKK  351 (431)
Q Consensus       280 ~~~l~~L~l~~~~~~~~---~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~--~p~L~~L~i~~~~~~~~~~~~  351 (431)
                      +++|+.|.++.+. +..   ..++   ..+++|++|.|+.+.-.......+...+..  +|+|++|.+....-    ...
T Consensus       215 ~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i----~~~  289 (386)
T 2ca6_A          215 CQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----ELD  289 (386)
T ss_dssp             CTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC----BHH
T ss_pred             CCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC----CHH
Confidence            8888888887766 321   1122   226677777775432221222334555544  78888888865321    111


Q ss_pred             Cc--cccc--CccCCccEEEEeeee
Q 014064          352 RH--QISK--HSHQHLKLVELQGFN  372 (431)
Q Consensus       352 ~~--~~~~--~~~~~L~~v~i~~~~  372 (431)
                      +.  .+..  ..+++|+.+.+.+-.
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCc
Confidence            11  1111  224788888887744

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.40  E-value=4.2e-07  Score=85.93  Aligned_cols=211  Identities=13%  Similarity=0.140  Sum_probs=127.5

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  238 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  238 (431)
                      +.++++|++|.|.++.+++-  . -+..+++|+.|.+.++... .+.....+++|+.|.+.+|.....+.  -..++|++
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            46778888888887766542  1 2667788888888777532 22113345778888887775333221  13467888


Q ss_pred             EEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064          239 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  316 (431)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  316 (431)
                      |.+.+....  ..+..+++|+.+.+..+.....     ..+..+++|+.|.+..+. +........+++|++|.++.+.-
T Consensus       160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-----SPLASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEecCCCcCCchhhccCCCCCEEEccCCccccc-----ccccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCcc
Confidence            887766432  1255677788877764433221     225677888888887765 33222223367888888755322


Q ss_pred             CcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEE
Q 014064          317 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII  396 (431)
Q Consensus       317 ~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i  396 (431)
                        ....   . +..+|+|++|++....-.    .   .+.-....+|+.+.+.+-.-..-  .    .+.+.+.|+.+.+
T Consensus       234 --~~~~---~-~~~l~~L~~L~l~~n~l~----~---~~~~~~l~~L~~L~l~~n~l~~~--~----~~~~l~~L~~L~L  294 (347)
T 4fmz_A          234 --TDLS---P-LANLSQLTWLEIGTNQIS----D---INAVKDLTKLKMLNVGSNQISDI--S----VLNNLSQLNSLFL  294 (347)
T ss_dssp             --CCCG---G-GTTCTTCCEEECCSSCCC----C---CGGGTTCTTCCEEECCSSCCCCC--G----GGGGCTTCSEEEC
T ss_pred             --CCCc---c-hhcCCCCCEEECCCCccC----C---ChhHhcCCCcCEEEccCCccCCC--h----hhcCCCCCCEEEC
Confidence              2221   1 778899999988653211    1   11223457888888877532221  1    2567899999988


Q ss_pred             EeCC
Q 014064          397 KPSG  400 (431)
Q Consensus       397 ~~~~  400 (431)
                      ....
T Consensus       295 ~~n~  298 (347)
T 4fmz_A          295 NNNQ  298 (347)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            8765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.39  E-value=7.7e-08  Score=94.79  Aligned_cols=258  Identities=14%  Similarity=0.105  Sum_probs=121.5

Q ss_pred             cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCC----ccceeeeccCCC
Q 014064          127 KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCP----LLENLRITQSPD  202 (431)
Q Consensus       127 ~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~L~L~~~~~  202 (431)
                      ++++.+++..+.........+|          ..+..+++|++|.|++..+.+..+..+...++    .|+.|.|.+|..
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~----------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i   97 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDIS----------SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL   97 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHH----------HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC
T ss_pred             CCccEEEccCCCCCHHHHHHHH----------HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC
Confidence            4788888776542211001111          12345678888888887777666666666655    688888887753


Q ss_pred             Cc----e-eeeecCCCCcceEEeeccCCcceEEE---------eCCceeEEEEeceeeee--------ecCCCCCceeEE
Q 014064          203 LL----S-LKVVGSSIPLKCLDIQFCYSIKEIEI---------SAPNLLSFKYIGQDINL--------HVGSLPQLVDVV  260 (431)
Q Consensus       203 ~~----~-l~i~~~~~~L~~L~l~~c~~l~~i~i---------~ap~L~~L~~~~~~~~~--------~~~~~~~L~~l~  260 (431)
                      ..    . ...-..+++|++|.++++. +....+         ..++|++|.+.+..+..        .+..+++|+.+.
T Consensus        98 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W           98 TGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             BGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred             CHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence            21    1 1112345778888877765 221100         12357777776553321        122356666666


Q ss_pred             EEeecCcch-hhHHH-hhhccCCCceEEEeeeceeeeccc---ccc---cCCCccEEEEEEeecCcccHHHHH-HHHhhC
Q 014064          261 FHVTPMVQK-MHCIG-SIVSYLPQLKTLELDGCNEVFAQF---SQR---EFPKLMNLNISFTAANQETLLGLS-FIMKAC  331 (431)
Q Consensus       261 i~~~~~~~~-~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~---~~~---~~~~L~~L~l~~~~~~~~~~~~l~-~ll~~~  331 (431)
                      +..+..... ...+. .+....++|+.|.++.+. +....   ++.   ..++|++|.++.+.-.......+. .+...+
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~  255 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS  255 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC
Confidence            664332211 11111 222345566777766554 32211   111   145666666643311111111111 122246


Q ss_pred             CCcceEEEEeeccccccCCCCc--cccc-CccCCccEEEEeeeecCc-hhHHHHHHHHhcCcccccEEEEeCC
Q 014064          332 PFLEKLVLQIWNNGRRIGKKRH--QISK-HSHQHLKLVELQGFNGRE-IDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       332 p~L~~L~i~~~~~~~~~~~~~~--~~~~-~~~~~L~~v~i~~~~g~~-~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                      ++|++|++....    ....+.  ++.. ..+++|+.+.+.+-.-+. ....+.+.+..+.+.|+++.+....
T Consensus       256 ~~L~~L~L~~n~----l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          256 SRLRTLWIWECG----ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             CCCCEEECTTSC----CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             CCceEEECcCCC----CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            667766664321    010000  0111 124567777666532211 1123333333444677777666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.37  E-value=4.1e-06  Score=79.37  Aligned_cols=168  Identities=17%  Similarity=0.242  Sum_probs=99.9

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  238 (431)
                      ++|++|.|.+..+++-. ...+..+++|+.|.+.++. ++.+.  .-..+++|+.|.+.++. +..+.-    ..++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence            67888888877655321 1135678888888888774 33221  12245778888887765 333321    2478888


Q ss_pred             EEEeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccC---CCccEEE
Q 014064          239 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREF---PKLMNLN  310 (431)
Q Consensus       239 L~~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~---~~L~~L~  310 (431)
                      |++.+..+.     ..+..+++|+.+.+..+......  ....+..+++|+.|.++... +.. ..+..+   ++|++|.
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI--QRKDFAGLTFLEELEIDASD-LQS-YEPKSLKSIQNVSHLI  204 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--CTTTTTTCCEEEEEEEEETT-CCE-ECTTTTTTCSEEEEEE
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--CHHHccCCCCCCEEECCCCC-cCc-cCHHHHhccccCCeec
Confidence            888776432     13567888998888865321110  01345678899999998776 321 123334   4555555


Q ss_pred             EEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064          311 ISFTAANQETLLGLSFIMKACPFLEKLVLQIWN  343 (431)
Q Consensus       311 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  343 (431)
                      +..+  .....  ...++..+++|++|++....
T Consensus       205 l~~n--~l~~~--~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          205 LHMK--QHILL--LEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EECS--CSTTH--HHHHHHHTTTEEEEEEESCB
T ss_pred             CCCC--ccccc--hhhhhhhcccccEEECCCCc
Confidence            5432  22222  23466779999999997653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.36  E-value=1.5e-06  Score=85.79  Aligned_cols=210  Identities=13%  Similarity=0.109  Sum_probs=104.0

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  238 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  238 (431)
                      +.++++|++|.|.++.+.+-.-   +..+++|+.|.+.+|.. +.+.....+++|++|.+.+|. +..+.  -..++|+.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccChh---hcCCCCCCEEECCCCCC-CCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            3455666666666655543211   55666666666666532 211112334566666666553 11111  11355666


Q ss_pred             EEEeceeee-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064          239 FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  317 (431)
Q Consensus       239 L~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (431)
                      |.+.+.... ..+..+++|+.+.+..+.....     ..+..+++|+.|.++.+. +........+++|++|.+..+.- 
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l-  233 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQL-  233 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC-
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCc-
Confidence            665432111 1244566666666654332211     224566677777776555 22211122256677766644311 


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  397 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  397 (431)
                       ...    ..+..+|+|++|++....-.   +   . ..-..+.+|+.+.+.+-.-.... .     +...+.|+++.+.
T Consensus       234 -~~~----~~l~~l~~L~~L~l~~n~l~---~---~-~~~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L~  295 (466)
T 1o6v_A          234 -KDI----GTLASLTNLTDLDLANNQIS---N---L-APLSGLTKLTELKLGANQISNIS-P-----LAGLTALTNLELN  295 (466)
T ss_dssp             -CCC----GGGGGCTTCSEEECCSSCCC---C---C-GGGTTCTTCSEEECCSSCCCCCG-G-----GTTCTTCSEEECC
T ss_pred             -ccc----hhhhcCCCCCEEECCCCccc---c---c-hhhhcCCCCCEEECCCCccCccc-c-----ccCCCccCeEEcC
Confidence             111    13456777777777543211   0   0 11223567888888764322111 0     5678888888887


Q ss_pred             eCC
Q 014064          398 PSG  400 (431)
Q Consensus       398 ~~~  400 (431)
                      ...
T Consensus       296 ~n~  298 (466)
T 1o6v_A          296 ENQ  298 (466)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.32  E-value=1.3e-07  Score=89.03  Aligned_cols=220  Identities=16%  Similarity=0.167  Sum_probs=138.6

Q ss_pred             HHHHHHhcCCCCeeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCC
Q 014064           88 VNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSL  167 (431)
Q Consensus        88 v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L  167 (431)
                      +...+.......+..+.+....-..-...+.      .-.+++.|++......               .+|..+.++++|
T Consensus        71 ~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~------~l~~L~~L~L~~n~l~---------------~lp~~~~~l~~L  129 (328)
T 4fcg_A           71 TADLLEDATQPGRVALELRSVPLPQFPDQAF------RLSHLQHMTIDAAGLM---------------ELPDTMQQFAGL  129 (328)
T ss_dssp             HHHHHHHHTSTTCCEEEEESSCCSSCCSCGG------GGTTCSEEEEESSCCC---------------CCCSCGGGGTTC
T ss_pred             hHHHHhcccccceeEEEccCCCchhcChhhh------hCCCCCEEECCCCCcc---------------chhHHHhccCCC
Confidence            3334433334458888875432111111111      1237888888765321               244456788999


Q ss_pred             CEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee----------cCCCCcceEEeeccCCcceEE---EeCC
Q 014064          168 RSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV----------GSSIPLKCLDIQFCYSIKEIE---ISAP  234 (431)
Q Consensus       168 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~----------~~~~~L~~L~l~~c~~l~~i~---i~ap  234 (431)
                      ++|.|.+..+.  .+..-+..+++|+.|.|.+|...+.+...          ..+++|+.|.+.++. +..+.   -..+
T Consensus       130 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~  206 (328)
T 4fcg_A          130 ETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQ  206 (328)
T ss_dssp             SEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCT
T ss_pred             CEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCC
Confidence            99999999876  34445788999999999998655433111          125899999999886 33331   1357


Q ss_pred             ceeEEEEeceeee---eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccE
Q 014064          235 NLLSFKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN  308 (431)
Q Consensus       235 ~L~~L~~~~~~~~---~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~  308 (431)
                      +|++|++.+....   -.++.+++|+.+.+..+...+.   +...+..+++|+.|.++.+. .. ..+|..   +++|++
T Consensus       207 ~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~---~p~~~~~l~~L~~L~L~~n~-~~-~~~p~~~~~l~~L~~  281 (328)
T 4fcg_A          207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCS-NL-LTLPLDIHRLTQLEK  281 (328)
T ss_dssp             TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB---CCCCTTCCCCCCEEECTTCT-TC-CBCCTTGGGCTTCCE
T ss_pred             CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh---hHHHhcCCCCCCEEECCCCC-ch-hhcchhhhcCCCCCE
Confidence            8999999887542   2466788999998885443321   11345788999999998865 11 223333   677888


Q ss_pred             EEEEEeecCcccHHHHHHHHhhCCCcceEEEE
Q 014064          309 LNISFTAANQETLLGLSFIMKACPFLEKLVLQ  340 (431)
Q Consensus       309 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~  340 (431)
                      |.|+.+..    ...+...+.++|+|+.+.+.
T Consensus       282 L~L~~n~~----~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          282 LDLRGCVN----LSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             EECTTCTT----CCCCCGGGGGSCTTCEEECC
T ss_pred             EeCCCCCc----hhhccHHHhhccCceEEeCC
Confidence            87754311    11234567889999998874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.31  E-value=6.4e-07  Score=83.37  Aligned_cols=166  Identities=16%  Similarity=0.184  Sum_probs=105.1

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  238 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  238 (431)
                      +..+++|++|.|.++.+.+-.-   +..+++|+.|.|.++. ++.+.....+++|+.|.+.+|. +..+.  -..++|+.
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence            4577888888888887765322   7788888888888875 3333223355788888888775 33221  12477888


Q ss_pred             EEEeceeeee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064          239 FKYIGQDINL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  316 (431)
Q Consensus       239 L~~~~~~~~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  316 (431)
                      |.+.+.....  .+..+++|+.+.+..+.....     ..+..+++|+.|.++... +........+++|++|.++.+.-
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCC-----hhhcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCcc
Confidence            8887764421  255677888888775433221     125778888888887776 33222123377888888754322


Q ss_pred             CcccHHHHHHHHhhCCCcceEEEEeec
Q 014064          317 NQETLLGLSFIMKACPFLEKLVLQIWN  343 (431)
Q Consensus       317 ~~~~~~~l~~ll~~~p~L~~L~i~~~~  343 (431)
                        ....   . +..+|+|+.|++....
T Consensus       208 --~~~~---~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          208 --SDVS---P-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             --CBCG---G-GTTCTTCCEEEEEEEE
T ss_pred             --Cccc---c-ccCCCCCCEEEccCCe
Confidence              1221   1 6788999999887754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.30  E-value=5.1e-07  Score=88.85  Aligned_cols=174  Identities=18%  Similarity=0.181  Sum_probs=112.2

Q ss_pred             CCCEEEEeeEEEcch---hHHHHHhcCCccceeeeccCCCCcee---e----eecCCCCcceEEeeccCCcceEE-----
Q 014064          166 SLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLSL---K----VVGSSIPLKCLDIQFCYSIKEIE-----  230 (431)
Q Consensus       166 ~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~l---~----i~~~~~~L~~L~l~~c~~l~~i~-----  230 (431)
                      +|++|.|.++.+++.   .+...+..|++|++|.|.++.. +..   .    +....++|++|.+.+|. +....     
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL-GDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC-HHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC-chHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence            799999999998864   4666788999999999999863 211   0    11123579999999885 22110     


Q ss_pred             ---EeCCceeEEEEeceeeee----ec-----CCCCCceeEEEEeecCcch-hhHHHhhhccCCCceEEEeeeceeeecc
Q 014064          231 ---ISAPNLLSFKYIGQDINL----HV-----GSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLELDGCNEVFAQ  297 (431)
Q Consensus       231 ---i~ap~L~~L~~~~~~~~~----~~-----~~~~~L~~l~i~~~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~  297 (431)
                         -..|+|++|++.+..+..    .+     ...++|+.+.+..+..... ...+...+..+++|+.|.++.+. +...
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~  242 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDV  242 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence               124899999998764321    11     1355888888875543321 12233566788999999998776 3322


Q ss_pred             c-------ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          298 F-------SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       298 ~-------~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      .       +....++|++|.+..+.-.......+...+..+|+|++|++...
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence            1       11125788888885542222223336677888999999988653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.28  E-value=6.6e-08  Score=91.06  Aligned_cols=167  Identities=19%  Similarity=0.281  Sum_probs=87.7

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce--e-eeecCCCCcceEEeeccCCcceE-----EEeC
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS--L-KVVGSSIPLKCLDIQFCYSIKEI-----EISA  233 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~--l-~i~~~~~~L~~L~l~~c~~l~~i-----~i~a  233 (431)
                      .++++|++|.|.++.+++.... .++.||+|+.|.|.+|..++.  + .+...+++|+.|.+.+|..+...     .-..
T Consensus       115 ~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             hhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            3556666666666655444333 345566666666666643332  1 11223466666666666323221     1124


Q ss_pred             C-ceeEEEEecee--e-----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc--cccC
Q 014064          234 P-NLLSFKYIGQD--I-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREF  303 (431)
Q Consensus       234 p-~L~~L~~~~~~--~-----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~  303 (431)
                      | +|++|++.++.  .     +..+..+++|+.+.+..+....  +.....+..+++|+.|.++.+..+....+  ...+
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            5 66666666542  1     1123456777777766443211  11113346678888888877742322221  1227


Q ss_pred             CCccEEEEEEeecCcccHHHHHHHHhhCCCcc
Q 014064          304 PKLMNLNISFTAANQETLLGLSFIMKACPFLE  335 (431)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~  335 (431)
                      ++|++|.+..+    .+...+..+.+.+|.|+
T Consensus       272 ~~L~~L~l~~~----i~~~~~~~l~~~l~~L~  299 (336)
T 2ast_B          272 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ  299 (336)
T ss_dssp             TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence            78888887543    22223445556677765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.27  E-value=6.7e-06  Score=82.74  Aligned_cols=221  Identities=14%  Similarity=0.124  Sum_probs=122.1

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEE---E-eCCceeE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~---i-~ap~L~~  238 (431)
                      ++|++|.|.+..+++-. ...+.++++|+.|.+.++.. +.+.  .-..+++|+.|.++++. +..+.   + ..++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence            67788887777654321 11256777888888877742 2221  11244677777777765 22221   1 2467888


Q ss_pred             EEEeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccC---CCccEEE
Q 014064          239 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREF---PKLMNLN  310 (431)
Q Consensus       239 L~~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~---~~L~~L~  310 (431)
                      |++++....     ..++.+++|+.+.+..+.......  ...+..+++|+.|.+.... +.. ..+..+   ++|++|.
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALS-LRN-YQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCE-ECTTTTTTCSEEEEEE
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCc-ccc-cChhhhhccccCceEe
Confidence            887766432     246678889988888654221110  0235678899999998776 322 233334   4455555


Q ss_pred             EEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcc
Q 014064          311 ISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATM  390 (431)
Q Consensus       311 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~  390 (431)
                      +...  .....  ...++..+++|+.|++....-....  ....+..-...+|+.+.+.+-.-......-+...+.+.+.
T Consensus       179 l~~n--~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  252 (549)
T 2z81_A          179 LHLS--ESAFL--LEIFADILSSVRYLELRDTNLARFQ--FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE  252 (549)
T ss_dssp             EECS--BSTTH--HHHHHHSTTTBSEEEEESCBCTTCC--CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred             cccC--ccccc--chhhHhhcccccEEEccCCcccccc--ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence            5433  22222  2345677999999999775321100  0001112235678888877654333333333334456667


Q ss_pred             cccEEEEe
Q 014064          391 LEKMIIKP  398 (431)
Q Consensus       391 Le~m~i~~  398 (431)
                      |+.+.+..
T Consensus       253 L~~l~l~~  260 (549)
T 2z81_A          253 LSEVEFDD  260 (549)
T ss_dssp             CCEEEEES
T ss_pred             cccccccc
Confidence            77666653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.26  E-value=1e-05  Score=81.46  Aligned_cols=179  Identities=13%  Similarity=0.125  Sum_probs=121.3

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc--eeeeecCCCCcceEEeeccCCcceEEE----e
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL--SLKVVGSSIPLKCLDIQFCYSIKEIEI----S  232 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~l~i~~~~~~L~~L~l~~c~~l~~i~i----~  232 (431)
                      ..+.++++|++|.|++..+++. ....+.++++|+.|.+.++....  .......+++|+.|.+.++..+..+..    .
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            4567899999999999987653 23347889999999999885321  112234568999999999875555431    2


Q ss_pred             CCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEeeeceeeecc-----ccccc
Q 014064          233 APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQ-----FSQRE  302 (431)
Q Consensus       233 ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~-----~~~~~  302 (431)
                      .++|++|++.+....    ..+..+++|+.+.+......    .+. .+...+++|+.|.++... +...     .+...
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~  221 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA----FLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEV  221 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST----THHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCccc----ccchhhHhhcccccEEEccCCc-cccccccccchhhh
Confidence            478999999876442    24566788888888754432    111 345678999999998876 3321     11223


Q ss_pred             CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064          303 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN  343 (431)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  343 (431)
                      .++|++|.+....-.......+...+..+++|+.|.+....
T Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            67899998865432223334456667889999999987643

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.26  E-value=1.3e-06  Score=86.19  Aligned_cols=210  Identities=15%  Similarity=0.154  Sum_probs=137.5

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCC-cceEEEeCCceeEE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS-IKEIEISAPNLLSF  239 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~-l~~i~i~ap~L~~L  239 (431)
                      +.++++|++|.|.++.+.+-.-   +..+++|+.|.+.+|.. ..+.....+++|+.|.+.+... ... --..++|+.|
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~L~~L  182 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGNQVTDLKP-LANLTTLERL  182 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEE-CCCGGGTTCTTCSEEEEEESCCCCGG-GTTCTTCCEE
T ss_pred             hcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCcc-CCChhhccCCcccEeecCCcccCchh-hccCCCCCEE
Confidence            6789999999999987765322   78899999999998852 2222234568899999865321 111 1134789999


Q ss_pred             EEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064          240 KYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  317 (431)
Q Consensus       240 ~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (431)
                      ++.+....  -.+..+++|+.+.+..+.....     ..+..+++|+.|.++.+. +........+++|++|.+..+.- 
T Consensus       183 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-  255 (466)
T 1o6v_A          183 DISSNKVSDISVLAKLTNLESLIATNNQISDI-----TPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQI-  255 (466)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCC-
T ss_pred             ECcCCcCCCChhhccCCCCCEEEecCCccccc-----ccccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCcc-
Confidence            99877542  1356788999998885543322     124678999999998876 43322222378899998865422 


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  397 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  397 (431)
                       .....    +..+++|++|.+....-.   .    .+.-..+.+|+.+.+.+-.-..-. .     +.+.+.|+.+.+.
T Consensus       256 -~~~~~----~~~l~~L~~L~l~~n~l~---~----~~~~~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~L~  317 (466)
T 1o6v_A          256 -SNLAP----LSGLTKLTELKLGANQIS---N----ISPLAGLTALTNLELNENQLEDIS-P-----ISNLKNLTYLTLY  317 (466)
T ss_dssp             -CCCGG----GTTCTTCSEEECCSSCCC---C----CGGGTTCTTCSEEECCSSCCSCCG-G-----GGGCTTCSEEECC
T ss_pred             -ccchh----hhcCCCCCEEECCCCccC---c----cccccCCCccCeEEcCCCcccCch-h-----hcCCCCCCEEECc
Confidence             22221    778999999999654211   1    111234578999988774322211 1     5788999999988


Q ss_pred             eCC
Q 014064          398 PSG  400 (431)
Q Consensus       398 ~~~  400 (431)
                      ...
T Consensus       318 ~n~  320 (466)
T 1o6v_A          318 FNN  320 (466)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.24  E-value=3.1e-06  Score=79.00  Aligned_cols=243  Identities=13%  Similarity=0.110  Sum_probs=145.6

Q ss_pred             ccHhHHHHHHhh--cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCcc
Q 014064          115 CNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLL  192 (431)
Q Consensus       115 ~~~~~wi~~~~~--~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  192 (431)
                      ..+...+.....  .++++|++.......     ++         |..+.++++|++|.|.+..+++.. .  +..+++|
T Consensus        20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~---------~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L   82 (317)
T 3o53_A           20 SSLKQALASLRQSAWNVKELDLSGNPLSQ-----IS---------AADLAPFTKLELLNLSSNVLYETL-D--LESLSTL   82 (317)
T ss_dssp             TTHHHHHHHHHTTGGGCSEEECTTSCCCC-----CC---------HHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTC
T ss_pred             cchhhhHHHHhccCCCCCEEECcCCccCc-----CC---------HHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCC
Confidence            345555554433  368888876543221     11         113457899999999988665321 1  6788999


Q ss_pred             ceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-eCCceeEEEEeceeee----eecCCCCCceeEEEEeecCc
Q 014064          193 ENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMV  267 (431)
Q Consensus       193 e~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~  267 (431)
                      +.|.+.++. ++.+.   ..++|+.|.+.++. +..+.. ..++|+.|.+.+..+.    ..+..+++|+.+.+..+...
T Consensus        83 ~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (317)
T 3o53_A           83 RTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID  157 (317)
T ss_dssp             CEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred             CEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence            999998884 33222   23789999998876 444433 3588999998877542    24556788888887754333


Q ss_pred             chhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccc
Q 014064          268 QKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRR  347 (431)
Q Consensus       268 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~  347 (431)
                      ...  ...+...+++|+.|.++... +........+++|++|.++.+.-.  .   +..-+..+++|+.|++....-.  
T Consensus       158 ~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~--~---l~~~~~~l~~L~~L~L~~N~l~--  227 (317)
T 3o53_A          158 TVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA--F---MGPEFQSAAGVTWISLRNNKLV--  227 (317)
T ss_dssp             EEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC--E---ECGGGGGGTTCSEEECTTSCCC--
T ss_pred             ccc--HHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCC--c---chhhhcccCcccEEECcCCccc--
Confidence            210  11444678999999998776 332211112788999888654221  1   1122668899999999654211  


Q ss_pred             cCCCCcccc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064          348 IGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  397 (431)
Q Consensus       348 ~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  397 (431)
                           ..+. -....+|+.+.+.+-.....   .....+...+.|+.+.+.
T Consensus       228 -----~l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          228 -----LIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             -----EECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred             -----chhhHhhcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence                 1111 12346888888876433322   222344556666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.20  E-value=1.1e-06  Score=81.50  Aligned_cols=210  Identities=16%  Similarity=0.131  Sum_probs=120.0

Q ss_pred             CCCCCCCCEEEEeeEEEcchh-HHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-----EeCC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEV-VEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-----ISAP  234 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-----i~ap  234 (431)
                      +.++++|++|.|.+..++... ....+.+++.|+.|.|.++...........+++|+.|.+.++. +..+.     -..+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence            467889999999887665321 1122446889999999887532221212346888888887764 22111     1247


Q ss_pred             ceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc---cCCCcc
Q 014064          235 NLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLM  307 (431)
Q Consensus       235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~~L~  307 (431)
                      +|++|.+.+....    ..+..+++|+.+.+..+...+.  .....+..+++|+.|+++.+. +... .+.   .+++|+
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~  202 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQ-LEQL-SPTAFNSLSSLQ  202 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCC
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCC-cCCc-CHHHhcCCCCCC
Confidence            8888888776443    2345678888887764332210  011445677888888887765 3221 122   256777


Q ss_pred             EEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEee--eecCchhHHHHHH
Q 014064          308 NLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQG--FNGREIDFELAFY  383 (431)
Q Consensus       308 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~--~~g~~~e~~l~~~  383 (431)
                      +|.++.+.-.....    ..+..+++|+.|++....-.      +..+.  ....++|+.+.+.+  +.+......+.+.
T Consensus       203 ~L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~  272 (306)
T 2z66_A          203 VLNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHIM------TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW  272 (306)
T ss_dssp             EEECTTSCCSBCCS----GGGTTCTTCCEEECTTSCCC------BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred             EEECCCCccCccCh----hhccCcccCCEeECCCCCCc------ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence            77764432111111    12567888998888553211      11111  11225888998877  5566555566665


Q ss_pred             HH
Q 014064          384 VF  385 (431)
Q Consensus       384 ll  385 (431)
                      +-
T Consensus       273 l~  274 (306)
T 2z66_A          273 IK  274 (306)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.14  E-value=6.6e-07  Score=94.08  Aligned_cols=227  Identities=18%  Similarity=0.127  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcchhHH-HHHhcCCccceeeeccCCCCcee--eeecCCCCcceEEeeccCCcceEE---
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYSIKEIE---  230 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~l~~i~---  230 (431)
                      +|..+.++++|++|.|+++.+.+.... .-+..|++|+.|+|.+|......  .+...+++|+.|+++++. +....   
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~  170 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVG  170 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChh
Confidence            344567778888888887777643211 13677788888888776421111  111234667777766654 22111   


Q ss_pred             ----EeCCceeEEEEeceeee--ee-----------------------cCCCCCceeEEEEeecCcchhhHHHhhhccCC
Q 014064          231 ----ISAPNLLSFKYIGQDIN--LH-----------------------VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLP  281 (431)
Q Consensus       231 ----i~ap~L~~L~~~~~~~~--~~-----------------------~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~  281 (431)
                          -..++|++|++.+....  ..                       ++.+++|+.+.+..+...+   .....+..++
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~  247 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG---DFSRAISTCT  247 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS---CHHHHTTTCS
T ss_pred             hhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC---cccHHHhcCC
Confidence                11244555554443221  11                       3344444444444322211   1112334555


Q ss_pred             CceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCcc
Q 014064          282 QLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSH  360 (431)
Q Consensus       282 ~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~  360 (431)
                      +|+.|.++.+. +........+++|++|.+..+.-.. ...  ..+...|++|++|++....-.      +..+. -..+
T Consensus       248 ~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~L~~n~l~~-~ip--~~~~~~~~~L~~L~Ls~n~l~------~~~p~~~~~l  317 (768)
T 3rgz_A          248 ELKLLNISSNQ-FVGPIPPLPLKSLQYLSLAENKFTG-EIP--DFLSGACDTLTGLDLSGNHFY------GAVPPFFGSC  317 (768)
T ss_dssp             SCCEEECCSSC-CEESCCCCCCTTCCEEECCSSEEEE-SCC--CCSCTTCTTCSEEECCSSEEE------ECCCGGGGGC
T ss_pred             CCCEEECCCCc-ccCccCccccCCCCEEECcCCccCC-ccC--HHHHhhcCcCCEEECcCCcCC------CccchHHhcC
Confidence            55555555444 2211111124555555553321100 000  012233566666666432110      01111 1235


Q ss_pred             CCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064          361 QHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       361 ~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                      ++|+.+.+.+-.-..   .+....+.+.+.|+++.+....
T Consensus       318 ~~L~~L~L~~n~l~~---~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          318 SLLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             TTCCEEECCSSEEEE---ECCHHHHTTCTTCCEEECCSSE
T ss_pred             CCccEEECCCCcccC---cCCHHHHhcCCCCCEEeCcCCc
Confidence            678888877632110   0111235678889998887553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.13  E-value=1.7e-06  Score=79.44  Aligned_cols=63  Identities=19%  Similarity=0.190  Sum_probs=33.2

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~  224 (431)
                      +..+++|++|.|.+..+++-. ...+.+++.|+.|.+.++..++.+.  ....+++|+.|.+.++.
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~  116 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG  116 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc
Confidence            456667777777666543211 1224556677777776664333221  11234566666666554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.12  E-value=7e-06  Score=81.12  Aligned_cols=171  Identities=15%  Similarity=0.097  Sum_probs=79.9

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAP  234 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap  234 (431)
                      .+.++++|++|.|.+..++.-. ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++. +..+..    ..+
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  152 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN  152 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCT
T ss_pred             hhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCC
Confidence            3455666666666665443211 112455666666666665422110 011234566666665543 222211    135


Q ss_pred             ceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCcc
Q 014064          235 NLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM  307 (431)
Q Consensus       235 ~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~  307 (431)
                      +|+.|.+.+..+.    ..+..+++|+.+.+..+......   ...+..+++|+.|.++.+.. . ..++..   ..+|+
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~l~~~~~-~-~~~~~~~~~~~~L~  227 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR---DYSFKRLYRLKVLEISHWPY-L-DTMTPNCLYGLNLT  227 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC---TTCSCSCTTCCEEEEECCTT-C-CEECTTTTTTCCCS
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC---hhhcccCcccceeeCCCCcc-c-cccCcccccCcccc
Confidence            6666666655331    12445666666666543222100   02335566666666655431 1 111111   23666


Q ss_pred             EEEEEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064          308 NLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       308 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      +|.+..+.-.  ..  -...+..+++|+.|++..
T Consensus       228 ~L~l~~n~l~--~~--~~~~~~~l~~L~~L~Ls~  257 (477)
T 2id5_A          228 SLSITHCNLT--AV--PYLAVRHLVYLRFLNLSY  257 (477)
T ss_dssp             EEEEESSCCC--SC--CHHHHTTCTTCCEEECCS
T ss_pred             EEECcCCccc--cc--CHHHhcCccccCeeECCC
Confidence            6666543111  11  113456677777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.11  E-value=2.6e-06  Score=79.25  Aligned_cols=187  Identities=14%  Similarity=0.156  Sum_probs=122.0

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-E-eCCceeEE
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSF  239 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i-~ap~L~~L  239 (431)
                      ..+++|++|.+.++.+.+  +. -+..+++|+.|.|.+|... .+.....+++|+.|.+.++. +..+. + ..++|+.|
T Consensus        38 ~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred             HHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCC-CChhHccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence            357899999999887764  22 2678999999999998532 22223456899999999886 33332 1 24789999


Q ss_pred             EEeceeeee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064          240 KYIGQDINL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  317 (431)
Q Consensus       240 ~~~~~~~~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (431)
                      .+.+..+..  .+..+++|+.+.+..+.....     ..+..+++|+.|.++.+. +........+++|+.|.++.+.- 
T Consensus       113 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-  185 (308)
T 1h6u_A          113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKI-  185 (308)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-
T ss_pred             ECCCCCCCCchhhcCCCCCCEEECCCCccCcC-----ccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCcc-
Confidence            988775421  366788999988885543321     225788899999998776 43322223367888888755322 


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeee
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN  372 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~  372 (431)
                       .....    +..+|+|++|++....-.   .    .+.-..+.+|+.+.+.+-.
T Consensus       186 -~~~~~----l~~l~~L~~L~L~~N~l~---~----~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          186 -SDISP----LASLPNLIEVHLKNNQIS---D----VSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -CCCGG----GGGCTTCCEEECTTSCCC---B----CGGGTTCTTCCEEEEEEEE
T ss_pred             -CcChh----hcCCCCCCEEEccCCccC---c----cccccCCCCCCEEEccCCe
Confidence             22221    678999999998553211   1    1112345778888887743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.09  E-value=2.3e-06  Score=84.93  Aligned_cols=210  Identities=15%  Similarity=0.146  Sum_probs=131.9

Q ss_pred             CceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee
Q 014064          128 NVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK  207 (431)
Q Consensus       128 ~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~  207 (431)
                      ++++|++.......     +         .|..+.++++|++|.|+++.+++.. .  +..+++|+.|.|.+|. ++.+.
T Consensus        35 ~L~~L~Ls~n~l~~-----~---------~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~l~   96 (487)
T 3oja_A           35 NVKELDLSGNPLSQ-----I---------SAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQELL   96 (487)
T ss_dssp             GCCEEECCSSCCCC-----C---------CGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEEEE
T ss_pred             CccEEEeeCCcCCC-----C---------CHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCCCC
Confidence            67777776543221     1         1224568899999999988765421 1  7789999999999884 33322


Q ss_pred             eecCCCCcceEEeeccCCcceEE-EeCCceeEEEEeceee----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCC
Q 014064          208 VVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQ  282 (431)
Q Consensus       208 i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L~~~~~~~----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~  282 (431)
                         ..++|+.|.+.+|. +..+. -..|+|+.|.+.+..+    +..++.+++|+.+.+..+...+..  ...+...+++
T Consensus        97 ---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~~l~~  170 (487)
T 3oja_A           97 ---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--FAELAASSDT  170 (487)
T ss_dssp             ---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--GGGGGGGTTT
T ss_pred             ---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--hHHHhhhCCc
Confidence               22789999999887 44333 2358899999987754    234567888998888755433210  1144457899


Q ss_pred             ceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccC
Q 014064          283 LKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQ  361 (431)
Q Consensus       283 l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~  361 (431)
                      |+.|.++.+. +........+++|+.|.|+.+.-.  .   +..-+..+|+|+.|++....-..       .+. -...+
T Consensus       171 L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~--~---~~~~~~~l~~L~~L~Ls~N~l~~-------lp~~l~~l~  237 (487)
T 3oja_A          171 LEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA--F---MGPEFQSAAGVTWISLRNNKLVL-------IEKALRFSQ  237 (487)
T ss_dssp             CCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC--E---ECGGGGGGTTCSEEECTTSCCCE-------ECTTCCCCT
T ss_pred             ccEEecCCCc-cccccccccCCCCCEEECCCCCCC--C---CCHhHcCCCCccEEEecCCcCcc-------cchhhccCC
Confidence            9999998877 432211112778899888654222  1   11226688999999996542111       111 12346


Q ss_pred             CccEEEEeeeecC
Q 014064          362 HLKLVELQGFNGR  374 (431)
Q Consensus       362 ~L~~v~i~~~~g~  374 (431)
                      +|+.+.+.+-...
T Consensus       238 ~L~~L~l~~N~l~  250 (487)
T 3oja_A          238 NLEHFDLRGNGFH  250 (487)
T ss_dssp             TCCEEECTTCCBC
T ss_pred             CCCEEEcCCCCCc
Confidence            7888887764444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.08  E-value=2.6e-06  Score=83.37  Aligned_cols=208  Identities=14%  Similarity=0.084  Sum_probs=114.4

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----e
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----S  232 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~  232 (431)
                      ..+.++++|++|.|.+..+.+-.. ..+.++++|+.|.|.++.- +.+.  .-..+++|+.|.+.++. +..+.-    .
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~  158 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR  158 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT
T ss_pred             HHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcC-CeeCHhHhhccccCceeeCCCCc-ccccCHHHhhh
Confidence            356678888888888776543211 2356788888888887742 2221  11244778888887765 443322    2


Q ss_pred             CCceeEEEEece-eee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CC
Q 014064          233 APNLLSFKYIGQ-DIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FP  304 (431)
Q Consensus       233 ap~L~~L~~~~~-~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~  304 (431)
                      .++|+.|++.+. ...    ..+.++++|+.+.+..+.....     .-+..+++|+.|+++... +... .+..   ++
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~  231 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNH-LSAI-RPGSFQGLM  231 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----CCCTTCSSCCEEECTTSC-CCEE-CTTTTTTCT
T ss_pred             CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----cccCCCcccCEEECCCCc-cCcc-ChhhhccCc
Confidence            477888887763 111    2355677777777764432211     124567788888887665 3211 1222   45


Q ss_pred             CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEee--eecCchhHHHH
Q 014064          305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELA  381 (431)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~  381 (431)
                      +|++|.+..+.-.  ..  ....+..+++|+.|++....-.   .   .... -....+|+.+.+.+  +........+.
T Consensus       232 ~L~~L~L~~n~l~--~~--~~~~~~~l~~L~~L~L~~N~l~---~---~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~  301 (440)
T 3zyj_A          232 HLQKLWMIQSQIQ--VI--ERNAFDNLQSLVEINLAHNNLT---L---LPHDLFTPLHHLERIHLHHNPWNCNCDILWLS  301 (440)
T ss_dssp             TCCEEECTTCCCC--EE--CTTSSTTCTTCCEEECTTSCCC---C---CCTTTTSSCTTCCEEECCSSCEECSSTTHHHH
T ss_pred             cCCEEECCCCcee--EE--ChhhhcCCCCCCEEECCCCCCC---c---cChhHhccccCCCEEEcCCCCccCCCCchHHH
Confidence            6666665332111  11  1134567788888888543211   0   0001 12347888888877  44555444454


Q ss_pred             HHHHh
Q 014064          382 FYVFE  386 (431)
Q Consensus       382 ~~ll~  386 (431)
                      ..+-.
T Consensus       302 ~~~~~  306 (440)
T 3zyj_A          302 WWIKD  306 (440)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            44433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.07  E-value=3.6e-06  Score=82.72  Aligned_cols=206  Identities=14%  Similarity=0.042  Sum_probs=112.0

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----e
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----S  232 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~  232 (431)
                      ..+.++++|++|.|.+..+++-. ...+.++++|+.|.|.++.. +.+.  .-..+++|+.|.++++. +..+.-    .
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~  169 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR  169 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTT
T ss_pred             HHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCCC-cceeCHhHHhc
Confidence            35567788888888877654321 12356778888888877642 2211  11234678888877765 443322    2


Q ss_pred             CCceeEEEEece-eee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc---cCC
Q 014064          233 APNLLSFKYIGQ-DIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFP  304 (431)
Q Consensus       233 ap~L~~L~~~~~-~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~  304 (431)
                      .|+|+.|++.+. ...    ..+.++++|+.+.+..+.....     .-+..+++|+.|+++... +... .+.   .++
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~  242 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-----PNLTPLVGLEELEMSGNH-FPEI-RPGSFHGLS  242 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-----CCCTTCTTCCEEECTTSC-CSEE-CGGGGTTCT
T ss_pred             CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-----ccccccccccEEECcCCc-Cccc-CcccccCcc
Confidence            467777777652 111    1345677777777664432211     224566788888887665 2211 111   255


Q ss_pred             CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEee--eecCchhHHH
Q 014064          305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQG--FNGREIDFEL  380 (431)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~--~~g~~~e~~l  380 (431)
                      +|+.|.+..+.-.  ..  ....+..+++|+.|++....-.       ..+.  -....+|+.+.+.+  +........+
T Consensus       243 ~L~~L~L~~n~l~--~~--~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l  311 (452)
T 3zyi_A          243 SLKKLWVMNSQVS--LI--ERNAFDGLASLVELNLAHNNLS-------SLPHDLFTPLRYLVELHLHHNPWNCDCDILWL  311 (452)
T ss_dssp             TCCEEECTTSCCC--EE--CTTTTTTCTTCCEEECCSSCCS-------CCCTTSSTTCTTCCEEECCSSCEECSTTTHHH
T ss_pred             CCCEEEeCCCcCc--eE--CHHHhcCCCCCCEEECCCCcCC-------ccChHHhccccCCCEEEccCCCcCCCCCchHH
Confidence            6666666432111  11  1134567788888888653211       0111  12346788888877  4455544445


Q ss_pred             HHHHH
Q 014064          381 AFYVF  385 (431)
Q Consensus       381 ~~~ll  385 (431)
                      ...+-
T Consensus       312 ~~~l~  316 (452)
T 3zyi_A          312 AWWLR  316 (452)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.06  E-value=2.6e-06  Score=73.60  Aligned_cols=15  Identities=20%  Similarity=0.138  Sum_probs=9.7

Q ss_pred             HHhhCCCcceEEEEe
Q 014064          327 IMKACPFLEKLVLQI  341 (431)
Q Consensus       327 ll~~~p~L~~L~i~~  341 (431)
                      .+..+|+|++|++..
T Consensus       176 ~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             TGGGCSSCCEEEECB
T ss_pred             HhccCCCCCEEEeeC
Confidence            355667777777754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.03  E-value=5.5e-06  Score=77.30  Aligned_cols=212  Identities=13%  Similarity=0.092  Sum_probs=137.1

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  242 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  242 (431)
                      .+++|++|.|.+..+++- ....+..+++|+.|.|.++....... ...+++|+.|.++++. +..+. ..|+|+.|.+.
T Consensus        32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred             cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence            568999999999987653 23447899999999999986433333 3456899999999886 55554 34899999998


Q ss_pred             ceee-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecc---cccccCCCccEEEEEEeecCc
Q 014064          243 GQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAANQ  318 (431)
Q Consensus       243 ~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~  318 (431)
                      +..+ ......+++|+.+.+..+.....   ....+..+++|+.|+++... +...   .+...+++|++|.++.+.-. 
T Consensus       108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~-  182 (317)
T 3o53_A          108 NNNISRVSCSRGQGKKNIYLANNKITML---RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY-  182 (317)
T ss_dssp             SSCCSEEEECCCSSCEEEECCSSCCCSG---GGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred             CCccCCcCccccCCCCEEECCCCCCCCc---cchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCc-
Confidence            8755 34455688899998875543321   01234678899999998776 3322   22223678888888543211 


Q ss_pred             ccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEE
Q 014064          319 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  397 (431)
Q Consensus       319 ~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  397 (431)
                       ....    ...+++|++|++....-..       .+. -....+|+.+.+.+-.-..    +. .-+.+.+.|+.+.+.
T Consensus       183 -~~~~----~~~l~~L~~L~Ls~N~l~~-------l~~~~~~l~~L~~L~L~~N~l~~----l~-~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          183 -DVKG----QVVFAKLKTLDLSSNKLAF-------MGPEFQSAAGVTWISLRNNKLVL----IE-KALRFSQNLEHFDLR  245 (317)
T ss_dssp             -EEEC----CCCCTTCCEEECCSSCCCE-------ECGGGGGGTTCSEEECTTSCCCE----EC-TTCCCCTTCCEEECT
T ss_pred             -cccc----ccccccCCEEECCCCcCCc-------chhhhcccCcccEEECcCCcccc----hh-hHhhcCCCCCEEEcc
Confidence             1111    1147999999996642111       111 1234678888776632221    10 113567889998887


Q ss_pred             eCC
Q 014064          398 PSG  400 (431)
Q Consensus       398 ~~~  400 (431)
                      ...
T Consensus       246 ~N~  248 (317)
T 3o53_A          246 GNG  248 (317)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.03  E-value=9.4e-07  Score=92.93  Aligned_cols=213  Identities=18%  Similarity=0.184  Sum_probs=137.7

Q ss_pred             CCCCCCCEEEEeeEEEcchhHH--HHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-E-eCCcee
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVE--FFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLL  237 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i-~ap~L~  237 (431)
                      .++++|++|.|.++.+++....  ..+.+|+.|+.|.+.+|...+...+ ..+++|+.|.+.+|.....+. + ..++|+
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~  226 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ  226 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence            6889999999998887654333  2378899999999998853332222 466899999999886322121 2 358999


Q ss_pred             EEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc----CCCccEE
Q 014064          238 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE----FPKLMNL  309 (431)
Q Consensus       238 ~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~----~~~L~~L  309 (431)
                      +|++.+....    ..+..+++|+.+.+..+...+..    .. ..+++|+.|.+..+. +.. .+|..    +++|++|
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~-~~l~~L~~L~L~~n~-l~~-~ip~~~~~~~~~L~~L  299 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PP-LPLKSLQYLSLAENK-FTG-EIPDFLSGACDTLTGL  299 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESC----CC-CCCTTCCEEECCSSE-EEE-SCCCCSCTTCTTCSEE
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCcc----Cc-cccCCCCEEECcCCc-cCC-ccCHHHHhhcCcCCEE
Confidence            9999887542    35678999999998865433211    11 278899999998877 331 22332    4789999


Q ss_pred             EEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc--cCccCCccEEEEeeee--cC-chhHHHHHHH
Q 014064          310 NISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFN--GR-EIDFELAFYV  384 (431)
Q Consensus       310 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~--g~-~~e~~l~~~l  384 (431)
                      .+..+.-..    .+...+..+++|++|++....-.      +..+.  -....+|+.+.+.+-.  |. ...       
T Consensus       300 ~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~------~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-------  362 (768)
T 3rgz_A          300 DLSGNHFYG----AVPPFFGSCSLLESLALSSNNFS------GELPMDTLLKMRGLKVLDLSFNEFSGELPES-------  362 (768)
T ss_dssp             ECCSSEEEE----CCCGGGGGCTTCCEEECCSSEEE------EECCHHHHTTCTTCCEEECCSSEEEECCCTT-------
T ss_pred             ECcCCcCCC----ccchHHhcCCCccEEECCCCccc------CcCCHHHHhcCCCCCEEeCcCCccCccccHH-------
Confidence            885532211    12345678999999999654211      11121  1345789999887743  22 111       


Q ss_pred             HhcCc-ccccEEEEeC
Q 014064          385 FENAT-MLEKMIIKPS  399 (431)
Q Consensus       385 l~~a~-~Le~m~i~~~  399 (431)
                      +.+.+ .|+++.+...
T Consensus       363 l~~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSN  378 (768)
T ss_dssp             HHHHTTTCSEEECCSS
T ss_pred             HHhhhcCCcEEEccCC
Confidence            22334 8998888654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.01  E-value=3.6e-06  Score=83.53  Aligned_cols=211  Identities=13%  Similarity=0.095  Sum_probs=133.7

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY  241 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  241 (431)
                      ..+++|++|.|.+..+++-. ...+..+++|+.|.|.+|....... ...+++|+.|.++++. +..+.. .|+|+.|.+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~-~~~L~~L~L  106 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV-GPSIETLHA  106 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCC-GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE-CTTCCEEEC
T ss_pred             ccCCCccEEEeeCCcCCCCC-HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC-CCCcCEEEC
Confidence            35679999999999876531 2346889999999999986433333 3456899999999886 555543 389999999


Q ss_pred             eceee-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecc---cccccCCCccEEEEEEeecC
Q 014064          242 IGQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAAN  317 (431)
Q Consensus       242 ~~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  317 (431)
                      .+..+ ......+++|+.+.+..+...+.   ....+..+++|+.|+++... +...   .+...+++|+.|.|+.+.-.
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITML---RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSG---GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCC---CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccc
Confidence            98755 34445678999998885543321   11334678999999998776 3322   22223678888888554221


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeee--cCchhHHHHHHHHhcCcccccEE
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN--GREIDFELAFYVFENATMLEKMI  395 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~--g~~~e~~l~~~ll~~a~~Le~m~  395 (431)
                        ....    ...+|+|+.|++....-..      ..+.-..+.+|+.+.+.+-.  +...       .+...+.|+.+.
T Consensus       183 --~~~~----~~~l~~L~~L~Ls~N~l~~------~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~l~~l~~L~~L~  243 (487)
T 3oja_A          183 --DVKG----QVVFAKLKTLDLSSNKLAF------MGPEFQSAAGVTWISLRNNKLVLIEK-------ALRFSQNLEHFD  243 (487)
T ss_dssp             --EEEC----CCCCTTCCEEECCSSCCCE------ECGGGGGGTTCSEEECTTSCCCEECT-------TCCCCTTCCEEE
T ss_pred             --cccc----cccCCCCCEEECCCCCCCC------CCHhHcCCCCccEEEecCCcCcccch-------hhccCCCCCEEE
Confidence              1111    1258999999996642111      10111234677777776522  1111       134566777776


Q ss_pred             EEeC
Q 014064          396 IKPS  399 (431)
Q Consensus       396 i~~~  399 (431)
                      +...
T Consensus       244 l~~N  247 (487)
T 3oja_A          244 LRGN  247 (487)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            6544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.01  E-value=1e-05  Score=81.75  Aligned_cols=99  Identities=13%  Similarity=0.009  Sum_probs=48.6

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-----
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-----  231 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-----  231 (431)
                      +|..+..+ +|++|.+.++.+..  +..  ..++.|+.|.+.++........ ..+++|+.|.+.++. +..+..     
T Consensus       297 l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~  369 (570)
T 2z63_A          297 VKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSD  369 (570)
T ss_dssp             CCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHH
T ss_pred             hhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccc
Confidence            45445555 77777777666542  111  3566666666666543322211 234566666665554 222210     


Q ss_pred             -eCCceeEEEEeceee---eeecCCCCCceeEEEE
Q 014064          232 -SAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFH  262 (431)
Q Consensus       232 -~ap~L~~L~~~~~~~---~~~~~~~~~L~~l~i~  262 (431)
                       ..++|++|++.+...   +..+..+++|+.+.+.
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~  404 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ  404 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECT
T ss_pred             cccCccCEEECCCCccccccccccccCCCCEEEcc
Confidence             135556665554422   1124455555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.01  E-value=1e-06  Score=84.70  Aligned_cols=180  Identities=16%  Similarity=0.130  Sum_probs=113.4

Q ss_pred             CCCCCCCEEEEeeEEEcch---hHHHHHhcCCccceeeeccCCCCce--eeeec---CC---------CCcceEEeeccC
Q 014064          162 SGIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLS--LKVVG---SS---------IPLKCLDIQFCY  224 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~--l~i~~---~~---------~~L~~L~l~~c~  224 (431)
                      ..+++|++|.|+++.+++.   .+...+..|++|+.|.|.+|..-..  ..+..   .+         ++|++|.+.+|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            4678899999988888764   3555678889999999988853110  01111   11         678888888776


Q ss_pred             Cc-ceEE------EeCCceeEEEEeceeee------e---ecCCCCCceeEEEEeecCcch-hhHHHhhhccCCCceEEE
Q 014064          225 SI-KEIE------ISAPNLLSFKYIGQDIN------L---HVGSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLE  287 (431)
Q Consensus       225 ~l-~~i~------i~ap~L~~L~~~~~~~~------~---~~~~~~~L~~l~i~~~~~~~~-~~~~~~~~~~~~~l~~L~  287 (431)
                      -. ..+.      -..++|++|.+.++.+.      +   .+..+++|+.+.+..+..... ...+...+..+++|+.|.
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            21 1111      13578888888876443      1   345788899888875543211 122335668889999999


Q ss_pred             eeeceeeecc---cccc-----cCCCccEEEEEEeecCcccHHHHHHHH-hhCCCcceEEEEee
Q 014064          288 LDGCNEVFAQ---FSQR-----EFPKLMNLNISFTAANQETLLGLSFIM-KACPFLEKLVLQIW  342 (431)
Q Consensus       288 l~~~~~~~~~---~~~~-----~~~~L~~L~l~~~~~~~~~~~~l~~ll-~~~p~L~~L~i~~~  342 (431)
                      ++.+. +...   .++.     .+++|++|.|..+.-.......+...+ .++|+|++|++...
T Consensus       251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            98877 4322   1222     167889988865432212222355555 67899999999654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.00  E-value=2.9e-06  Score=80.62  Aligned_cols=79  Identities=22%  Similarity=0.217  Sum_probs=52.9

Q ss_pred             CCCCCCCEEEEeeEEEc--------chhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCC----cceE
Q 014064          162 SGIKSLRSLTLCAVNVT--------GEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS----IKEI  229 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~----l~~i  229 (431)
                      ..||+|+.|.+..+...        ..++..++..+|+|++|.|.++.++....+  .+++|++|.+..|.-    +..+
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCCCChHHHHHH
Confidence            46789999998765322        224778899999999999998854432222  248899999887651    1111


Q ss_pred             E-EeCCceeEEEEe
Q 014064          230 E-ISAPNLLSFKYI  242 (431)
Q Consensus       230 ~-i~ap~L~~L~~~  242 (431)
                      . ...|+|++|++.
T Consensus       214 ~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          214 LGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHSBCTTCCEEEEE
T ss_pred             HHccCCCCcEEEEe
Confidence            1 145778877764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.98  E-value=2e-06  Score=84.54  Aligned_cols=15  Identities=33%  Similarity=0.277  Sum_probs=7.7

Q ss_pred             ccCCCceEEEeeece
Q 014064          278 SYLPQLKTLELDGCN  292 (431)
Q Consensus       278 ~~~~~l~~L~l~~~~  292 (431)
                      ..+++|+.|+++...
T Consensus       263 ~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          263 DGLASLVELNLAHNN  277 (452)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEECCCCc
Confidence            445555555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.97  E-value=1.8e-06  Score=88.10  Aligned_cols=97  Identities=15%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE------EeC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE------ISA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~------i~a  233 (431)
                      .+..+++|++|.+.++.+..  +..+  .+|.|+.|.+.++.......+ ..+++|+.|.+.++. +..+.      ...
T Consensus       302 ~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNA-LSFSGCCSYSDLGT  375 (606)
T ss_dssp             CCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSC-EEEEEECCHHHHCC
T ss_pred             hccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCc-cCCCcchhhhhccC
Confidence            44556667777776665522  2222  666777777766644433322 234666666666554 22221      123


Q ss_pred             CceeEEEEeceeee---eecCCCCCceeEEEE
Q 014064          234 PNLLSFKYIGQDIN---LHVGSLPQLVDVVFH  262 (431)
Q Consensus       234 p~L~~L~~~~~~~~---~~~~~~~~L~~l~i~  262 (431)
                      ++|++|++.+....   ..+..+++|+.+.+.
T Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~  407 (606)
T 3vq2_A          376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ  407 (606)
T ss_dssp             SCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred             CcccEeECCCCccccchhhccCCCCCCeeECC
Confidence            56666666554321   234455556655554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.95  E-value=5.9e-06  Score=75.72  Aligned_cols=205  Identities=13%  Similarity=0.053  Sum_probs=118.9

Q ss_pred             CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064          164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL  237 (431)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~  237 (431)
                      .++|++|.|.+..+++-. ...+..+++|+.|.|.++. ++.+.  .-..+++|+.|.+.++..+..+..    ..++|+
T Consensus        31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            479999999988765421 1236789999999999884 33321  123458899999998864444321    247899


Q ss_pred             EEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEE
Q 014064          238 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNI  311 (431)
Q Consensus       238 ~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l  311 (431)
                      +|++.+..+.    ..+..+++|+.+.+..+.....   ....+..+++|+.|.++... +....  ....+++|++|.+
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---PDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc---CHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEEC
Confidence            9988876442    2255677888887774432211   00335677888888887765 32111  0112566777766


Q ss_pred             EEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEee--eecCchhHHHHHHH
Q 014064          312 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELAFYV  384 (431)
Q Consensus       312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~~~l  384 (431)
                      ..+.-...    ....+..+++|+.|++....-.      +..+. -....+|+.+.+.+  +.+......+.+.+
T Consensus       185 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          185 HQNRVAHV----HPHAFRDLGRLMTLYLFANNLS------ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             CSSCCCEE----CTTTTTTCTTCCEEECCSSCCS------CCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             CCCccccc----CHhHccCcccccEeeCCCCcCC------cCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence            44321111    1234566788888887553211      01001 12346777777766  34444444454443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.93  E-value=3.4e-06  Score=81.06  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=43.2

Q ss_pred             CceeEEEEeceeee-eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEE
Q 014064          234 PNLLSFKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLN  310 (431)
Q Consensus       234 p~L~~L~~~~~~~~-~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~  310 (431)
                      ++|+.|++.+.... +.....++|+.+.+..+...+.     ..+..+++|+.|+++... +....  ....+++|++|.
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEE
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEE
Confidence            35555555554331 2222345566665554332221     334566667777766554 22110  111145555555


Q ss_pred             EEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064          311 ISFTAANQETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       311 l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      +..+.-.  .   +......+|+|++|++..
T Consensus       279 L~~n~l~--~---~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          279 ISNNRLV--A---LNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             CCSSCCC--E---EECSSSCCTTCCEEECCS
T ss_pred             CCCCcCc--c---cCcccCCCCCCCEEECCC
Confidence            5332111  1   111224456666666644

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.93  E-value=1.7e-06  Score=88.24  Aligned_cols=81  Identities=19%  Similarity=0.130  Sum_probs=39.6

Q ss_pred             hccCCCceEEEeeeceeeecc-cccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc
Q 014064          277 VSYLPQLKTLELDGCNEVFAQ-FSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI  355 (431)
Q Consensus       277 ~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~  355 (431)
                      +..+++|+.|.++++. +... .....+++|+.|.|+.+.-.  .   +..-+..+|+|+.|++....-.   ..     
T Consensus       274 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~--~---i~~~~~~l~~L~~L~L~~N~l~---~~-----  339 (597)
T 3oja_B          274 FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL--H---VERNQPQFDRLENLYLDHNSIV---TL-----  339 (597)
T ss_dssp             GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC--C---CGGGHHHHTTCSEEECCSSCCC---CC-----
T ss_pred             hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC--c---cCcccccCCCCCEEECCCCCCC---Cc-----
Confidence            3456666666665554 2211 11112566666666443211  1   1222355677777777543211   00     


Q ss_pred             ccCccCCccEEEEeee
Q 014064          356 SKHSHQHLKLVELQGF  371 (431)
Q Consensus       356 ~~~~~~~L~~v~i~~~  371 (431)
                      ....+.+|+.+.+.+-
T Consensus       340 ~~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          340 KLSTHHTLKNLTLSHN  355 (597)
T ss_dssp             CCCTTCCCSEEECCSS
T ss_pred             ChhhcCCCCEEEeeCC
Confidence            1223467888887763

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.93  E-value=3.6e-06  Score=85.84  Aligned_cols=123  Identities=11%  Similarity=0.084  Sum_probs=84.4

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-eCCceeEE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF  239 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L  239 (431)
                      +..+++|+.|.+.++.+..-.   -+..++.|+.|.+.+|.. +.+.-. .+++|+.|.+.++.....+.+ ..|+|++|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            667899999999988775422   467889999999999875 333211 568999999998864444433 35899999


Q ss_pred             EEeceeee------eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          240 KYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       240 ~~~~~~~~------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      ++.+....      ..+..+++|+.+.+..+.....    ...+..+++|+.|.++.+.
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE----CCCCTTCTTCCEEECTTSE
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCccccc----hhhccCCCCCCeeECCCCc
Confidence            98876442      2356788999988875432210    0234566777777776655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.93  E-value=5.8e-06  Score=79.48  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             CCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          280 LPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       280 ~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      .++|+.|.++... +........+++|++|.++.+.-...    ....+..+++|++|.+...
T Consensus       225 ~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          225 NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKI----MYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             CSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEE----ESGGGTTCSSCCEEECCSS
T ss_pred             cccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCc----ChhHccccccCCEEECCCC
Confidence            3567777776655 33222222366777777754321111    1234556778888877553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.92  E-value=1.4e-05  Score=78.86  Aligned_cols=175  Identities=23%  Similarity=0.183  Sum_probs=89.7

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee-eecCCCCcceEEeeccCCcceEEE---eCCc
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIEI---SAPN  235 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~~l~~i~i---~ap~  235 (431)
                      .+.++++|++|.|.++.+++- ....+..++.|+.|.|.++....... .-..+++|+.|.+.+|..+..+..   ..++
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence            455666677777666655432 12335667777777776654221110 112346677777777654443321   1246


Q ss_pred             eeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEE
Q 014064          236 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNL  309 (431)
Q Consensus       236 L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L  309 (431)
                      |++|++.+..+.    ..+..+++|+.+.+..+......   ...+..+++|+.|.+.... +....  ....+++|+.|
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE---GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC---TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEE
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC---hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEE
Confidence            777777665332    13456677777776644322100   0334566777777776654 22110  01114566666


Q ss_pred             EEEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064          310 NISFTAANQETLLGLSFIMKACPFLEKLVLQIWN  343 (431)
Q Consensus       310 ~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  343 (431)
                      .|..+.-.  ...  ...+..+++|++|++...+
T Consensus       302 ~L~~N~l~--~~~--~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          302 NVSGNQLT--TLE--ESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             ECCSSCCS--CCC--GGGBSCGGGCCEEECCSSC
T ss_pred             ECCCCcCc--eeC--HhHcCCCcccCEEEccCCC
Confidence            66433111  111  1344566777777776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.92  E-value=1e-06  Score=93.10  Aligned_cols=173  Identities=13%  Similarity=0.109  Sum_probs=104.0

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcch----------------hHHHHHh--cCCccceeeeccCCCCceee-eecCCCCcce
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLK-VVGSSIPLKC  217 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~  217 (431)
                      +|..+.++++|++|.|.+..++++                .+..-+.  .+++|+.|.|.+|...+.+. .-..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            677788899999999999888763                1333344  88999999998886443321 1234578889


Q ss_pred             EEeeccCCcce--EE----------EeCCceeEEEEeceee---ee--ecCCCCCceeEEEEeecCcchhhHHHhhhccC
Q 014064          218 LDIQFCYSIKE--IE----------ISAPNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYL  280 (431)
Q Consensus       218 L~l~~c~~l~~--i~----------i~ap~L~~L~~~~~~~---~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~  280 (431)
                      |.+.++..+..  +.          ...|+|+.|.+.+..+   +-  .++.+++|+.+.+..+... .+    ..+..+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l----p~~~~L  594 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL----EAFGTN  594 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BC----CCCCTT
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cc----hhhcCC
Confidence            98887752221  10          1235888888877643   22  4567788888877644332 11    134667


Q ss_pred             CCceEEEeeeceeeeccccccc---CCC-ccEEEEEEeecCcccHHHHHHHHhhC--CCcceEEEEee
Q 014064          281 PQLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISFTAANQETLLGLSFIMKAC--PFLEKLVLQIW  342 (431)
Q Consensus       281 ~~l~~L~l~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~~~~~~l~~ll~~~--p~L~~L~i~~~  342 (431)
                      ++|+.|.++... +.  .+|..   +++ |+.|.|..+.-.     .+...+...  ++|+.|++...
T Consensus       595 ~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L~-----~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          595 VKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKLK-----YIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             SEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCCC-----SCCSCCCTTCSSCEEEEECCSS
T ss_pred             CcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCCC-----cCchhhhccccCCCCEEECcCC
Confidence            788888887766 33  33433   345 666666443211     122233333  34777777553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.92  E-value=1.1e-05  Score=79.06  Aligned_cols=60  Identities=22%  Similarity=0.240  Sum_probs=28.8

Q ss_pred             hhccCCCceEEEeeeceeeecccccc---cCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064          276 IVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       276 ~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      .+..+++|+.|+++.+. +... .+.   .+++|++|.++.+.-.  ..  ....+..+++|++|++..
T Consensus       294 ~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~--~~--~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNE-INKI-DDNAFWGLTHLLKLNLSQNFLG--SI--DSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             TTTTCTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCC--EE--CGGGGTTCTTCCEEECCS
T ss_pred             hcccCCCCCEEECCCCc-cccc-ChhHhcCcccCCEEECCCCccC--Cc--ChhHhcCcccCCEEECCC
Confidence            34566677777776554 2211 111   1455566555432111  11  123445666777776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.91  E-value=2.3e-06  Score=84.04  Aligned_cols=85  Identities=19%  Similarity=0.070  Sum_probs=49.4

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce-ee--eecCCCCcceEEeeccCCcceEE-----
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LK--VVGSSIPLKCLDIQFCYSIKEIE-----  230 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~--i~~~~~~L~~L~l~~c~~l~~i~-----  230 (431)
                      ..+.++++|++|.|.+..+.+. ....+.++++|+.|.|.+|...+. +.  .-..+++|+.|.+.++. +..+.     
T Consensus        73 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~  150 (455)
T 3v47_A           73 NTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFF  150 (455)
T ss_dssp             TTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGG
T ss_pred             ccccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCccccc
Confidence            3456777788887777654332 122256677888888877753221 11  12245778888887765 22221     


Q ss_pred             EeCCceeEEEEecee
Q 014064          231 ISAPNLLSFKYIGQD  245 (431)
Q Consensus       231 i~ap~L~~L~~~~~~  245 (431)
                      -..++|++|++.+..
T Consensus       151 ~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          151 LNMRRFHVLDLTFNK  165 (455)
T ss_dssp             GGCTTCCEEECTTCC
T ss_pred             CCCCcccEEeCCCCc
Confidence            134778888777653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.91  E-value=1.9e-06  Score=77.45  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=32.2

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064           24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l   57 (431)
                      |+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999964

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=6.5e-06  Score=69.13  Aligned_cols=63  Identities=13%  Similarity=0.136  Sum_probs=31.3

Q ss_pred             CCCCCCEEEEeeE-EEcchhHHHHHh---cCCccceeeeccCCCCcee--eeecCCCCcceEEeeccCC
Q 014064          163 GIKSLRSLTLCAV-NVTGEVVEFFIH---NCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYS  225 (431)
Q Consensus       163 ~~~~L~~L~L~~~-~~~~~~l~~ll~---~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~  225 (431)
                      ++++|++|.|.+| .++|..+..+-.   .|+.|+.|+|.+|..++.-  .....+++|++|.+.+|+.
T Consensus        83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A           83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred             CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence            4555555555555 355555555443   1455555555555544321  1112345555555555553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.89  E-value=8.4e-06  Score=75.09  Aligned_cols=146  Identities=22%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCcee
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL  237 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~  237 (431)
                      ++..+++|++|.|.+..+++-.-   +..+++|+.|.+.++.. +.+.-...+++|+.|.+.++. +..+.  -..++|+
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~  137 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE  137 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCC
T ss_pred             hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCCc-CCCChhhcCCCCCC
Confidence            35678999999999887765322   78899999999988753 322223355788888887775 22221  0124455


Q ss_pred             EEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064          238 SFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  317 (431)
Q Consensus       238 ~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (431)
                      .|.+.+..+                    ...     ..+..+++|+.|.++.+. +........+++|++|.++.+.- 
T Consensus       138 ~L~l~~n~l--------------------~~~-----~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i-  190 (291)
T 1h6t_A          138 SLYLGNNKI--------------------TDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHI-  190 (291)
T ss_dssp             EEECCSSCC--------------------CCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC-
T ss_pred             EEEccCCcC--------------------Ccc-----hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcC-
Confidence            554444322                    110     233556666666666554 32221122255666666543311 


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEee
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                       .+.   . -+..+++|+.|++...
T Consensus       191 -~~l---~-~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          191 -SDL---R-ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             -CBC---G-GGTTCTTCSEEEEEEE
T ss_pred             -CCC---h-hhccCCCCCEEECcCC
Confidence             111   1 1566777777777654

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.88  E-value=4.9e-06  Score=75.64  Aligned_cols=37  Identities=22%  Similarity=0.591  Sum_probs=34.6

Q ss_pred             CCcCCCCCHHHHHHHHhcCChHHHH-HHHHHhhhhhhc
Q 014064           21 EDWFSRFPDDILIHIISGLTLKEAA-RTSVLSSRWKYL   57 (431)
Q Consensus        21 ~D~is~LPd~lL~~Ils~L~~~~~~-r~s~vSrrWr~l   57 (431)
                      ...+..||+|||..||++||.++++ ++++|||+|+.+
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            3578899999999999999999999 999999999987

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.84  E-value=3.9e-06  Score=70.37  Aligned_cols=126  Identities=20%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcce-EE--E-eCCceeEEE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE-IE--I-SAPNLLSFK  240 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~-i~--i-~ap~L~~L~  240 (431)
                      ++|++|.|.++.+++..+...+..+++|+.|.+.+|. ++.+.....+++|+.|.+.++. +.. +.  + ..|+|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEe
Confidence            6667777766666543444445666677777776664 2222222344566666666654 211 11  1 145566666


Q ss_pred             Eeceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          241 YIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       241 ~~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      +.+..+.     -.+..+++|+.+.+..+.......+....+..+++|+.|++..+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            5554321     123445556666555433322111111344556666666665554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.82  E-value=2.1e-05  Score=72.45  Aligned_cols=97  Identities=16%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  238 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  238 (431)
                      +.++++|+.|.|.+..+++-  .. +..+++|+.|.+.+|.. +.+.....+++|+.|.++++. +..+.  -..++|+.
T Consensus        86 l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i-~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  160 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT  160 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCCcC-CCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCE
Confidence            57899999999999987662  22 78899999999999853 333223356899999999886 33321  12356666


Q ss_pred             EEEeceeeee--ecCCCCCceeEEEE
Q 014064          239 FKYIGQDINL--HVGSLPQLVDVVFH  262 (431)
Q Consensus       239 L~~~~~~~~~--~~~~~~~L~~l~i~  262 (431)
                      |++.+..+..  .+..+++|+.+.+.
T Consensus       161 L~L~~N~l~~~~~l~~l~~L~~L~L~  186 (291)
T 1h6t_A          161 LSLEDNQISDIVPLAGLTKLQNLYLS  186 (291)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             EEccCCccccchhhcCCCccCEEECC
Confidence            6665543210  13344444444444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.82  E-value=3.9e-06  Score=82.10  Aligned_cols=127  Identities=16%  Similarity=0.196  Sum_probs=54.3

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEE--EeCCce
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE--ISAPNL  236 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~--i~ap~L  236 (431)
                      +.++++|++|.|.+..+..- -...+..+++|+.|.|.+|..+..+..  -..+++|+.|.+.++. +..+.  ...++|
T Consensus       132 ~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L  209 (440)
T 3zyj_A          132 FVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKL  209 (440)
T ss_dssp             SCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSC
T ss_pred             hhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCccc
Confidence            44555555555555543321 011234555555555555544433221  1123555555555543 22211  112455


Q ss_pred             eEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          237 LSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       237 ~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      +.|++++..+.    ..+.++++|+.+.+..+.....   ....+..+++|+.|+++...
T Consensus       210 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI---ERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTSSTTCTTCCEEECTTSC
T ss_pred             CEEECCCCccCccChhhhccCccCCEEECCCCceeEE---ChhhhcCCCCCCEEECCCCC
Confidence            55555554321    1234455555555442221110   00223455556666555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.82  E-value=3.8e-06  Score=85.64  Aligned_cols=105  Identities=22%  Similarity=0.229  Sum_probs=61.6

Q ss_pred             CCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE--
Q 014064          156 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI--  231 (431)
Q Consensus       156 ~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i--  231 (431)
                      .+|..+.++++|++|.|.++.+.+.. ...+..+|.|+.|.+.++.....+..  ...+++|+.|.+.++. +..+..  
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  369 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN  369 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred             CCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence            46777788899999999988776431 23356788888888887753322111  1234677777777665 333321  


Q ss_pred             ----eCCceeEEEEeceeee----eecCCCCCceeEEEE
Q 014064          232 ----SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFH  262 (431)
Q Consensus       232 ----~ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~  262 (431)
                          ..++|++|.+.+....    ..+..+++|+.+.+.
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence                2356666666654321    123445566665554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.81  E-value=1.1e-05  Score=74.99  Aligned_cols=109  Identities=15%  Similarity=-0.017  Sum_probs=65.7

Q ss_pred             eeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCCCCCccccccccccccCCCCCC--CCCCCCCEEEEeeEEE
Q 014064          100 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGL--SGIKSLRSLTLCAVNV  177 (431)
Q Consensus       100 l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~  177 (431)
                      ++.+.+.-  .......+..........++++|++.......              ..|..+  ..+++|++|.|.++.+
T Consensus        66 l~~l~l~~--~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------------~~~~~~~~~~~~~L~~L~Ls~n~i  129 (310)
T 4glp_A           66 VRRLTVGA--AQVPAQLLVGALRVLAYSRLKELTLEDLKITG--------------TMPPLPLEATGLALSSLRLRNVSW  129 (310)
T ss_dssp             CCEEEECS--CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBS--------------CCCCCSSSCCCBCCSSCEEESCCC
T ss_pred             eeEEEEeC--CcCCHHHHHHHHHhcccCceeEEEeeCCEecc--------------chhhhhhhccCCCCCEEEeecccc
Confidence            55655522  12222344555555555679999997654221              122233  5789999999999988


Q ss_pred             cchh--HH-HHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064          178 TGEV--VE-FFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       178 ~~~~--l~-~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~  224 (431)
                      ++..  +. .-+..+++|+.|.|.++...... ..-..+++|+.|.++++.
T Consensus       130 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  180 (310)
T 4glp_A          130 ATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP  180 (310)
T ss_dssp             SSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred             cchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence            7531  22 22458999999999988642211 111244778888887775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=4.1e-06  Score=70.32  Aligned_cols=60  Identities=7%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee--cC----CCCcceEEeeccCC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GS----SIPLKCLDIQFCYS  225 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~----~~~L~~L~l~~c~~  225 (431)
                      .+|+.|.|+++.+++..+..+ ++|++|+.|.|.+|..+++-.+.  +.    +++|++|++++|..
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence            579999999999999888775 89999999999999877653222  11    23677777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.81  E-value=7e-06  Score=78.10  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=19.3

Q ss_pred             CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      +|++|.|+.+.-.......+..++..+++|++|.+...
T Consensus       226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred             CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence            56666654433222333344455555666666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.80  E-value=8.8e-06  Score=75.37  Aligned_cols=217  Identities=14%  Similarity=0.081  Sum_probs=132.4

Q ss_pred             CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee----eecCCCCcceEEeeccCCcceEE---EeCCce
Q 014064          164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK----VVGSSIPLKCLDIQFCYSIKEIE---ISAPNL  236 (431)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~----i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L  236 (431)
                      .++|++|.|.+..+++- -...+..+++|+.|.|.++.. +.+.    ....+++|+.|.+.++. +..+.   ...++|
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L  103 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  103 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence            37999999999877631 123467899999999998853 2221    11245899999999886 44332   236899


Q ss_pred             eEEEEeceeeee-----ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccE
Q 014064          237 LSFKYIGQDINL-----HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN  308 (431)
Q Consensus       237 ~~L~~~~~~~~~-----~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~  308 (431)
                      ++|++.+.....     .+..+++|+.+.+..+.....   ....+..+++|+.|.+++.. +.....+..   +++|++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC---STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc---chhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCE
Confidence            999998875531     356788899888874432211   11445778999999998876 443233443   567777


Q ss_pred             EEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHHHHHHHHhcC
Q 014064          309 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENA  388 (431)
Q Consensus       309 L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a  388 (431)
                      |.++.+.-  ...  ....+..+|+|++|++....-.   .....  .-....+|+.+.+.+-.-.....    ..+.+.
T Consensus       180 L~Ls~n~l--~~~--~~~~~~~l~~L~~L~L~~N~l~---~~~~~--~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~  246 (306)
T 2z66_A          180 LDLSQCQL--EQL--SPTAFNSLSSLQVLNMSHNNFF---SLDTF--PYKCLNSLQVLDYSLNHIMTSKK----QELQHF  246 (306)
T ss_dssp             EECTTSCC--CEE--CTTTTTTCTTCCEEECTTSCCS---BCCSG--GGTTCTTCCEEECTTSCCCBCSS----SSCCCC
T ss_pred             EECCCCCc--CCc--CHHHhcCCCCCCEEECCCCccC---ccChh--hccCcccCCEeECCCCCCcccCH----HHHHhh
Confidence            77744311  111  1245678899999999553211   10000  01235788888887632111100    012334


Q ss_pred             -cccccEEEEeCC
Q 014064          389 -TMLEKMIIKPSG  400 (431)
Q Consensus       389 -~~Le~m~i~~~~  400 (431)
                       +.|+++.+....
T Consensus       247 ~~~L~~L~L~~N~  259 (306)
T 2z66_A          247 PSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCCEEECTTCC
T ss_pred             hccCCEEEccCCC
Confidence             478888876544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.80  E-value=6.5e-06  Score=83.76  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCcee
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL  237 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~  237 (431)
                      .+..+++|+.|.|.++.+.+-.-   +..+++|+.|.|.+|.. ..+.....+++|+.|.+.+|. +..+.  ...|+|+
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~  134 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE  134 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCC-CCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCS
T ss_pred             HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCC-CCChhhccCCCCCEEEecCCC-CCCCccccCCCccC
Confidence            46788999999999887765322   78899999999998853 333323456888999888876 33221  1236677


Q ss_pred             EEEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEE
Q 014064          238 SFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISF  313 (431)
Q Consensus       238 ~L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  313 (431)
                      .|.+++..+.  -.+..+++|+.+.+..+...+..    . +..+++|+.|.++.+. +....-...+++|+.|.|..
T Consensus       135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  206 (605)
T ss_dssp             EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCS
T ss_pred             EEECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCC-CCCChHHccCCCCCEEEccC
Confidence            7776665332  12344555666555533222110    1 4455566666665554 22211111245555555543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.80  E-value=5.9e-06  Score=83.51  Aligned_cols=226  Identities=15%  Similarity=0.092  Sum_probs=123.4

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-EeCCc
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPN  235 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i~ap~  235 (431)
                      .|..+..+++|++|.+.++.+.+  +...+..+ .|+.|.+.+|... .+.. ..+++|+.|.+.++.....+. ...|+
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             chhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccccccccCCC
Confidence            34566778999999999888763  33345667 8999999988643 2222 245889999998876322221 35689


Q ss_pred             eeEEEEeceeee------eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc---cccCCCc
Q 014064          236 LLSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---QREFPKL  306 (431)
Q Consensus       236 L~~L~~~~~~~~------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~---~~~~~~L  306 (431)
                      |+.|++.+....      ..+.++++|+.+.+..+......    .-+..+++|+.|.+..+. +.....   ...+++|
T Consensus       349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS----SNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE----EEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred             CCEEeCcCCccCccccccccccccCccCEEECCCCcccccc----ccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence            999998876432      23557888998887744322100    114566777777776554 221111   1114455


Q ss_pred             cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccc----cc-c--------------CCCCcccc-cCccCCccEE
Q 014064          307 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG----RR-I--------------GKKRHQIS-KHSHQHLKLV  366 (431)
Q Consensus       307 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~----~~-~--------------~~~~~~~~-~~~~~~L~~v  366 (431)
                      ++|.+..+.-  ...  ....+..+|+|++|++....-.    +. .              .-.+..+. -..+++|+.+
T Consensus       424 ~~L~l~~n~l--~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          424 IYLDISHTHT--RVA--FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CEEECTTSCC--EEC--CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CEEeCcCCcc--ccc--chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            5555432210  000  1123445556665555432110    00 0              00000011 1235678888


Q ss_pred             EEeeeecCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064          367 ELQGFNGREIDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       367 ~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                      .+.+-.-+.    +....+.+.+.|+++.+....
T Consensus       500 ~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          500 NMASNQLKS----VPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             ECCSSCCSC----CCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCCCcCCC----CCHHHhhcccCCcEEEecCCc
Confidence            887632111    111134678889988887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.79  E-value=1.4e-05  Score=78.62  Aligned_cols=160  Identities=19%  Similarity=0.132  Sum_probs=96.1

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-eCCceeEE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF  239 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L  239 (431)
                      +..+++|++|.|.+..+++-.    +..+++|+.|.+.++. ++.+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~-l~~l~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L  153 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK-LTKLDV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTEL  153 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC-CSCCCC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEE
T ss_pred             cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc-CCeecC-CCCCcCCEEECCCCc-cceeccccCCcCCEE
Confidence            456677777777777665532    5667777777777764 222332 344677777777665 333333 24677777


Q ss_pred             EEecee-e-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecC
Q 014064          240 KYIGQD-I-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  317 (431)
Q Consensus       240 ~~~~~~-~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  317 (431)
                      .+.+.. . .+.+..+++|+.+.+..+.... .    . +..+++|+.|.+.... +.... ...+++|+.|.++.+.- 
T Consensus       154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l----~-l~~l~~L~~L~l~~N~-l~~~~-l~~l~~L~~L~Ls~N~l-  224 (457)
T 3bz5_A          154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L----D-VSQNKLLNRLNCDTNN-ITKLD-LNQNIQLTFLDCSSNKL-  224 (457)
T ss_dssp             ECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C----C-CTTCTTCCEEECCSSC-CSCCC-CTTCTTCSEEECCSSCC-
T ss_pred             ECCCCCcccccccccCCcCCEEECCCCccce-e----c-cccCCCCCEEECcCCc-CCeec-cccCCCCCEEECcCCcc-
Confidence            776552 2 2345667777777776443322 1    2 4667788888887666 33221 12267788877754322 


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEee
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                       ..   +.  +..+|+|+.|++...
T Consensus       225 -~~---ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          225 -TE---ID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             -SC---CC--CTTCTTCSEEECCSS
T ss_pred             -cc---cC--ccccCCCCEEEeeCC
Confidence             12   22  678899999988754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.79  E-value=9.5e-06  Score=75.56  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=19.4

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  200 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  200 (431)
                      .+.++++|++|.|.+..+++. +...+..+++|+.|.|.++
T Consensus        96 ~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           96 AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred             hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCC
Confidence            344555555555555544321 1112445555555555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.78  E-value=1.5e-05  Score=81.13  Aligned_cols=122  Identities=16%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  238 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  238 (431)
                      +..+++|+.|.|.++.+.+-.   -+..+++|+.|.|.+|.. ..+.-...+++|+.|.+++|. +..+.  -..++|+.
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l-~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  157 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGI-SDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT  157 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCC-CCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSE
T ss_pred             hccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCC-CCCccccCCCccCEEECCCCc-cCCchhhcccCCCCE
Confidence            456777777777777665421   256677777777777642 222222345677777777665 33321  12367777


Q ss_pred             EEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          239 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      |+++++.+.  ..+..+++|+.+.+..+...+.     .-+..+++|+.|.+..+.
T Consensus       158 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-----~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          158 LSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-----RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             EECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-----GGGTTCTTCSEEECCSEE
T ss_pred             EECcCCcCCCchhhccCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEccCCc
Confidence            777665432  1255677777777764433321     234566777777776665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.75  E-value=1.2e-05  Score=73.11  Aligned_cols=125  Identities=18%  Similarity=0.162  Sum_probs=68.8

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~a  233 (431)
                      .+..+++|++|.|.+..+.+-  . -+..+++|+.|.+.+|.. +.+.-  -..+++|+.|.+.++. +..+.-    ..
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l  132 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKL  132 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred             ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCc-CCccCHHHhccC
Confidence            456788888888888877652  1 367788888888888743 22211  1245778888887765 332221    13


Q ss_pred             CceeEEEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          234 PNLLSFKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       234 p~L~~L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      ++|++|.+.+..+. +   .+..+++|+.+.+..+.....   ....+..+++|+.|.+..+.
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL---PEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc---CHHHhcCCccCCEEECCCCc
Confidence            56666666655332 1   133455555555553322110   00223445555555555444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.74  E-value=1.2e-05  Score=76.54  Aligned_cols=137  Identities=15%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             CCceeEEEEeecCcc-hhhHHHhhhccCC-CceEEEeeeceeeecccc------cccC-CCccEEEEEEeecCcccHHHH
Q 014064          254 PQLVDVVFHVTPMVQ-KMHCIGSIVSYLP-QLKTLELDGCNEVFAQFS------QREF-PKLMNLNISFTAANQETLLGL  324 (431)
Q Consensus       254 ~~L~~l~i~~~~~~~-~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~------~~~~-~~L~~L~l~~~~~~~~~~~~l  324 (431)
                      .+|+.+.+..+.... ....+...+..++ +|+.|.++.+. +.....      ...+ .+|++|.|+.+.-.......+
T Consensus       138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l  216 (362)
T 3goz_A          138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL  216 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH
Confidence            466666666433221 1122334445555 89999998776 332211      1113 489999886654333444456


Q ss_pred             HHHHhh-CCCcceEEEEeeccccccCCCCcc--cc-cCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEE
Q 014064          325 SFIMKA-CPFLEKLVLQIWNNGRRIGKKRHQ--IS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMI  395 (431)
Q Consensus       325 ~~ll~~-~p~L~~L~i~~~~~~~~~~~~~~~--~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~  395 (431)
                      ...+.. +++|++|++....    ..+.+..  .. -....+|+.+.+.+-.-..-.-+.+..+....+.+++++
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~  287 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLNC----LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII  287 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSSC----CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred             HHHHhcCCCCceEEECcCCC----CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence            677766 5699999997642    1221110  11 234578999998875411111233344444445555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.74  E-value=7.3e-06  Score=76.31  Aligned_cols=170  Identities=17%  Similarity=0.178  Sum_probs=85.1

Q ss_pred             CCCCCCCCCCEEEEee-EEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcc-eEE---Ee
Q 014064          159 CGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIK-EIE---IS  232 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~-~i~---i~  232 (431)
                      ..+.++++|++|.|.+ ..+.+. +..-+..+++|+.|.|.++.....+ ..-..+++|+.|.+.++. +. .+.   -.
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~  147 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSISS  147 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGG
T ss_pred             hhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHhc
Confidence            3456777888888874 333322 2222567778888888776532111 111234677777777664 11 111   12


Q ss_pred             CCceeEEEEeceeee----eecCCCC-CceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc---cCC
Q 014064          233 APNLLSFKYIGQDIN----LHVGSLP-QLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFP  304 (431)
Q Consensus       233 ap~L~~L~~~~~~~~----~~~~~~~-~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~---~~~  304 (431)
                      .++|++|++.+..+.    ..+..++ +|+.+.+..+...+..   ...+..+. |+.|.++... +... .+.   .++
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~---~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~  221 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI---PPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSDK  221 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC---CGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTTS
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC---ChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcCC
Confidence            467777777765432    2344555 6777766543222110   02223333 7777776655 3211 121   245


Q ss_pred             CccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064          305 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      +|+.|.+..+.-. ....    .+..+++|++|++..
T Consensus       222 ~L~~L~L~~N~l~-~~~~----~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          222 NTQKIHLAKNSLA-FDLG----KVGLSKNLNGLDLRN  253 (313)
T ss_dssp             CCSEEECCSSEEC-CBGG----GCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCcee-eecC----cccccCCCCEEECcC
Confidence            5666665433211 0111    144567777777754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.74  E-value=8.9e-06  Score=82.93  Aligned_cols=128  Identities=17%  Similarity=0.126  Sum_probs=84.7

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAP  234 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap  234 (431)
                      .+.++++|++|.|.+..++.  +..-+..++.|+.|.+.++...... .....+++|+.|.+.++.....+..    ..+
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            47788999999999887653  3333678999999999988643221 1223458999999998863222221    358


Q ss_pred             ceeEEEEeceeee------eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          235 NLLSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       235 ~L~~L~~~~~~~~------~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      +|++|++.+....      ..+..+++|+.+.+..+.....   ....+..+++|+.|.++.+.
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL---KTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE---CTTTTTTCTTCSEEECTTCC
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC---CHHHhcCCccCCeEECCCCc
Confidence            8999999876442      2367889999998875432211   01334566677777776554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.71  E-value=1.9e-05  Score=73.93  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=20.7

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      +.++++|++|.|.+..+++-. ...+..+++|+.|.|.++.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC
T ss_pred             hccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCc
Confidence            445566666666655443211 1124456666666665553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.70  E-value=2e-05  Score=71.60  Aligned_cols=58  Identities=14%  Similarity=0.027  Sum_probs=31.1

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      ++|++|.|.+..+++-. ...+..+++|+.|.|.++.. +.+..  -..+++|+.|.+.++.
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCc
Confidence            56777777776654321 11245677777777776642 21111  1223566666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.70  E-value=0.00037  Score=69.47  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=38.9

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc-ee-eeecCCCCcceEEeeccCCcceEEE-eCCce
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SL-KVVGSSIPLKCLDIQFCYSIKEIEI-SAPNL  236 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~l-~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L  236 (431)
                      .+.++++|++|.|++..+++  +...  .+++|+.|.|.++...+ .+ ..-..+++|+.|.+.++. +....+ ..++|
T Consensus        64 ~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L  138 (520)
T 2z7x_B           64 VFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHL  138 (520)
T ss_dssp             GGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTS
T ss_pred             HhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccc
Confidence            34566666666666665442  1111  56666666666664221 01 111234666666666654 211111 12344


Q ss_pred             --eEEEEece
Q 014064          237 --LSFKYIGQ  244 (431)
Q Consensus       237 --~~L~~~~~  244 (431)
                        +.|.+.+.
T Consensus       139 ~L~~L~l~~n  148 (520)
T 2z7x_B          139 NISKVLLVLG  148 (520)
T ss_dssp             CEEEEEEEEC
T ss_pred             eeeEEEeecc
Confidence              66666553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.68  E-value=2.6e-05  Score=72.51  Aligned_cols=85  Identities=20%  Similarity=0.053  Sum_probs=50.7

Q ss_pred             hcCceEEEEEcCCCCCCCccccccccccccCCCCCC--CCCCCCCEEEEeeEEEcch--hHHHHHh-cCCccceeeeccC
Q 014064          126 AKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGL--SGIKSLRSLTLCAVNVTGE--VVEFFIH-NCPLLENLRITQS  200 (431)
Q Consensus       126 ~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~--~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~~  200 (431)
                      -.++++|++.......              ..|..+  ..+++|++|.|.+..+++.  .+..+-. ..++|+.|.|.++
T Consensus        94 l~~L~~L~L~~n~l~~--------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           94 ISGLQELTLENLEVTG--------------TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             TSCCCEEEEEEEBCBS--------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred             cCCccEEEccCCcccc--------------hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence            3578888887653221              122222  5788999999998877653  2333221 2488999999887


Q ss_pred             CCCcee-eeecCCCCcceEEeeccC
Q 014064          201 PDLLSL-KVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       201 ~~~~~l-~i~~~~~~L~~L~l~~c~  224 (431)
                      ...... ..-..+++|+.|.++++.
T Consensus       160 ~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          160 HSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             SCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             CCccchHHHhccCCCCCEEECCCCC
Confidence            532211 111234677777777665

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.67  E-value=2.1e-06  Score=88.17  Aligned_cols=174  Identities=11%  Similarity=0.117  Sum_probs=104.8

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcch----------------hHHHHHh--cCCccceeeeccCCCCceee-eecCCCCcce
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLK-VVGSSIPLKC  217 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~  217 (431)
                      +|..+.++++|++|.|.+..+++.                .+..-+.  .+++|+.|.|.+|...+.+. .-..+++|+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            566778899999999999887762                1333355  88999999999886443321 1134578999


Q ss_pred             EEeeccCCcce--EE--Ee-------CCceeEEEEeceee---ee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCC
Q 014064          218 LDIQFCYSIKE--IE--IS-------APNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLP  281 (431)
Q Consensus       218 L~l~~c~~l~~--i~--i~-------ap~L~~L~~~~~~~---~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~  281 (431)
                      |.+.++..+..  +.  +.       .++|+.|.+.+...   +-  .++.+++|+.+.+..+...+.+.    -+..++
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~  353 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEI  353 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCC
Confidence            99888752221  11  11       27888888887643   22  46678888888877544332211    235566


Q ss_pred             CceEEEeeeceeeeccccccc---CCC-ccEEEEEEeecCcccHHHHHHHHhh--CCCcceEEEEee
Q 014064          282 QLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQIW  342 (431)
Q Consensus       282 ~l~~L~l~~~~~~~~~~~~~~---~~~-L~~L~l~~~~~~~~~~~~l~~ll~~--~p~L~~L~i~~~  342 (431)
                      +|+.|.++... +.  .+|..   +++ |++|.++.+.-.  .   +...+..  +++|+.|++...
T Consensus       354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~---lp~~~~~~~l~~L~~L~Ls~N  412 (636)
T 4eco_A          354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLK--Y---IPNIFDAKSVSVMSAIDFSYN  412 (636)
T ss_dssp             EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCS--S---CCSCCCTTCSSCEEEEECCSS
T ss_pred             CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCc--c---cchhhhhcccCccCEEECcCC
Confidence            77777777665 33  33333   445 666666443211  1   1122222  336777777543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.65  E-value=2.8e-05  Score=79.31  Aligned_cols=114  Identities=11%  Similarity=0.022  Sum_probs=56.4

Q ss_pred             CCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          213 IPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       213 ~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      ++|+.|.++++. +..+.-..++|+.|.+.++.+...-...++|+.+.+..+...       .+...+++|+.|.++.+.
T Consensus       181 ~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~-------~lp~~l~~L~~L~Ls~N~  252 (622)
T 3g06_A          181 SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-------SLPVLPSELKELMVSGNR  252 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-------CCCCCCTTCCEEECCSSC
T ss_pred             CCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccC-------cCCCCCCcCcEEECCCCC
Confidence            455555555544 333322335556665555433222223455666655533222       223455667777766654


Q ss_pred             eeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          293 EVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                       +.  .+|..+++|+.|.|+.+.-  .   .+..-+.++|+|+.|++...
T Consensus       253 -L~--~lp~~~~~L~~L~Ls~N~L--~---~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          253 -LT--SLPMLPSGLLSLSVYRNQL--T---RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             -CS--CCCCCCTTCCEEECCSSCC--C---SCCGGGGGSCTTCEEECCSC
T ss_pred             -CC--cCCcccccCcEEeCCCCCC--C---cCCHHHhhccccCEEEecCC
Confidence             32  2333456677766644311  1   12233566777777777554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.64  E-value=2.1e-05  Score=71.57  Aligned_cols=123  Identities=15%  Similarity=0.174  Sum_probs=65.5

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  238 (431)
                      ++|++|.|.+..+++-.- ..+.++++|+.|.+.++. ++.+..  -..+++|+.|.+.++. +..+..    ..++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence            568888887776543211 135667888888887774 222211  1234677777777665 333321    1356666


Q ss_pred             EEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          239 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       239 L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      |.+.+....    ..+..+++|+.+.+..+.....  .+...+..+++|+.|.++...
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCC
Confidence            666554321    1344566666666653322210  001334556667777666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.63  E-value=4e-05  Score=71.69  Aligned_cols=167  Identities=16%  Similarity=0.101  Sum_probs=104.0

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce-eeeecCCCCcceEEeeccCCcceEEEe-CCceeEEEEe
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEIS-APNLLSFKYI  242 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~~~  242 (431)
                      ++|++|.|.+..+++-. ...+..+++|+.|.|.++..... ...-..+++|+.|.+.++. +..+... .++|++|.+.
T Consensus        52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECC
Confidence            79999999998776521 12367899999999998853221 1112356899999999876 3333211 2789999998


Q ss_pred             ceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc-CCCccEEEEEEeecC
Q 014064          243 GQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAAN  317 (431)
Q Consensus       243 ~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  317 (431)
                      +..+.    ..+..+++|+.+.+..+.... .+.....+..+++|+.|.+.... +.  .++.. +++|++|.+..+.-.
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~L~~L~l~~n~l~  205 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTN-IT--TIPQGLPPSLTELHLDGNKIT  205 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSC-CC--SCCSSCCTTCSEEECTTSCCC
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCc-cc--cCCccccccCCEEECCCCcCC
Confidence            77542    236778999998887544321 01111445778888998887765 32  12222 467777776432111


Q ss_pred             cccHHHHHHHHhhCCCcceEEEEe
Q 014064          318 QETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       318 ~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      ..    ....+..+++|++|++..
T Consensus       206 ~~----~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          206 KV----DAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             EE----CTGGGTTCTTCCEEECCS
T ss_pred             cc----CHHHhcCCCCCCEEECCC
Confidence            11    113455677777777754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.60  E-value=1.9e-05  Score=71.85  Aligned_cols=174  Identities=15%  Similarity=0.089  Sum_probs=95.9

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceE---EE-eCC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEI---EI-SAP  234 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i---~i-~ap  234 (431)
                      .+.++++|++|.|.+..+++-. ...+..+++|+.|.|.++...... ..-..+++|+.|.+.++. +..+   .+ ..+
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  124 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK  124 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred             HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence            4567888888888887654321 123567888888888887532211 111345788888887765 2221   12 347


Q ss_pred             ceeEEEEeceee-----eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCce-EEEeeeceeeeccccccc---CCC
Q 014064          235 NLLSFKYIGQDI-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE---FPK  305 (431)
Q Consensus       235 ~L~~L~~~~~~~-----~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~~~~~~~~---~~~  305 (431)
                      +|++|.+.+...     +..+..+++|+.+.+..+...........-+..++.+. .|.++... +.  .++..   ..+
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~--~~~~~~~~~~~  201 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MN--FIQPGAFKEIR  201 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CC--EECTTSSCSCC
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-cc--ccCccccCCCc
Confidence            888888876643     22456778888888875543321111112223334333 66666555 22  11111   235


Q ss_pred             ccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          306 LMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       306 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      |++|.+..+.-  ...  ...++..+++|++|++...
T Consensus       202 L~~L~L~~n~l--~~~--~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          202 LKELALDTNQL--KSV--PDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             EEEEECCSSCC--SCC--CTTTTTTCCSCCEEECCSS
T ss_pred             ccEEECCCCce--eec--CHhHhcccccccEEEccCC
Confidence            66666643321  111  1234567788888777554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.58  E-value=5.8e-05  Score=68.60  Aligned_cols=167  Identities=11%  Similarity=0.102  Sum_probs=101.4

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  238 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  238 (431)
                      .+++|+.|.+.+..+.+-  .. +..+|.|+.|.+.++.. +.+.....+++|+.|.+.+|. +..+.-    ..++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence            567888888887766532  11 56788888888888753 223323355788888888775 333321    2478888


Q ss_pred             EEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccc--cccCCCccEEEEE
Q 014064          239 FKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREFPKLMNLNIS  312 (431)
Q Consensus       239 L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~  312 (431)
                      |.+.+..+. .   .+..+++|+.+.+..+.....   ....+..+++|+.|.++.+. +.....  ...+++|++|.+.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL---PKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCcc---CHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECC
Confidence            888876542 1   245678888888775432211   01345677888888887776 331110  1125677777765


Q ss_pred             EeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          313 FTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       313 ~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      .+.-.  ..  ....+..+++|+.|++...
T Consensus       190 ~N~l~--~~--~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          190 QNQLK--SV--PDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             SSCCS--CC--CTTTTTTCTTCCEEECCSS
T ss_pred             CCcCC--cc--CHHHHhCCcCCCEEEccCC
Confidence            43211  11  1245677888888888654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.57  E-value=7.8e-05  Score=67.43  Aligned_cols=38  Identities=16%  Similarity=0.272  Sum_probs=22.2

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      +..+++|++|.|.+..+++-.-   +..++.|+.|.|.++.
T Consensus        59 l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           59 MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSC
T ss_pred             HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCc
Confidence            4456666666666665544211   5566666666666653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.56  E-value=0.00012  Score=74.55  Aligned_cols=11  Identities=27%  Similarity=0.326  Sum_probs=6.8

Q ss_pred             cCCccEEEEee
Q 014064          360 HQHLKLVELQG  370 (431)
Q Consensus       360 ~~~L~~v~i~~  370 (431)
                      +++|+.+.+.+
T Consensus       283 l~~L~~L~L~~  293 (622)
T 3g06_A          283 LSSETTVNLEG  293 (622)
T ss_dssp             SCTTCEEECCS
T ss_pred             ccccCEEEecC
Confidence            45666666655

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.55  E-value=7.4e-05  Score=73.38  Aligned_cols=135  Identities=20%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEe-CCceeEEE
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEIS-APNLLSFK  240 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~-ap~L~~L~  240 (431)
                      ..+++|++|.+.+..+++-.    ++.++.|+.|.+.+|...+.+.+ ..+++|+.|.+.++. +..+.+. .++|+.|.
T Consensus       124 ~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~  197 (457)
T 3bz5_A          124 SQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLN  197 (457)
T ss_dssp             TTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEE
T ss_pred             CCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEEE
Confidence            34444444444444433311    33444455555544433333211 123455555555443 2222221 24555555


Q ss_pred             Eeceee-eeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEE
Q 014064          241 YIGQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN  310 (431)
Q Consensus       241 ~~~~~~-~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~  310 (431)
                      +.+..+ .+.++.+++|+.+.+..+...+ .    . +..+++|+.|.++... +.... +..+++|+.|.
T Consensus       198 l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-i----p-~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~  260 (457)
T 3bz5_A          198 CDTNNITKLDLNQNIQLTFLDCSSNKLTE-I----D-VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLH  260 (457)
T ss_dssp             CCSSCCSCCCCTTCTTCSEEECCSSCCSC-C----C-CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEE
T ss_pred             CcCCcCCeeccccCCCCCEEECcCCcccc-c----C-ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEe
Confidence            554433 2234455666665555433221 1    1 3456666666666554 22211 22255555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.55  E-value=2.5e-05  Score=71.90  Aligned_cols=58  Identities=21%  Similarity=0.130  Sum_probs=36.8

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  224 (431)
                      ++|+.|.|.+..++.-. ...+..++.|+.|.|.++. ++.+.....+++|+.|.++++.
T Consensus        31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred             CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc
Confidence            67888888877664321 1235677888888888775 3333333455677777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.54  E-value=0.00062  Score=67.81  Aligned_cols=13  Identities=0%  Similarity=-0.217  Sum_probs=8.8

Q ss_pred             CCCcceEEEEeec
Q 014064          331 CPFLEKLVLQIWN  343 (431)
Q Consensus       331 ~p~L~~L~i~~~~  343 (431)
                      +++|++|++....
T Consensus       246 ~~~L~~L~l~~n~  258 (520)
T 2z7x_B          246 HTTVWYFSISNVK  258 (520)
T ss_dssp             TSSCSEEEEEEEE
T ss_pred             hCcccEEEeeccc
Confidence            4677777776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.53  E-value=5.9e-06  Score=67.74  Aligned_cols=59  Identities=19%  Similarity=0.088  Sum_probs=30.1

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  224 (431)
                      ++|++|.+.++.+++..+...+..+++|+.|.+.+|. ++.+.....+++|+.|.++++.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc
Confidence            5666666666655533333344556666666666653 2222222233555555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.52  E-value=5.9e-05  Score=80.10  Aligned_cols=101  Identities=13%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCce-eeeecCCCCcceEEeeccCCcceEEE----eC
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEI----SA  233 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-l~i~~~~~~L~~L~l~~c~~l~~i~i----~a  233 (431)
                      ..+..+++|++|.|.+..+.+.. ...+.++++|+.|.|.++..... ...-..+++|+.|.+.++. +..+.-    ..
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l  361 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL  361 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence            34556677777777766554321 12245667777777766642111 0111234566666666553 222211    13


Q ss_pred             CceeEEEEeceeeeeecCCCCCceeEEEE
Q 014064          234 PNLLSFKYIGQDINLHVGSLPQLVDVVFH  262 (431)
Q Consensus       234 p~L~~L~~~~~~~~~~~~~~~~L~~l~i~  262 (431)
                      ++|+.|++.+..+.. +..+++|+.+.+.
T Consensus       362 ~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~  389 (844)
T 3j0a_A          362 EKLQTLDLRDNALTT-IHFIPSIPDIFLS  389 (844)
T ss_dssp             CCCCEEEEETCCSCC-CSSCCSCSEEEEE
T ss_pred             CCCCEEECCCCCCCc-ccCCCCcchhccC
Confidence            566666666554321 2234555555554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.52  E-value=4.3e-06  Score=88.39  Aligned_cols=12  Identities=17%  Similarity=-0.011  Sum_probs=6.6

Q ss_pred             cccccEEEEeCC
Q 014064          389 TMLEKMIIKPSG  400 (431)
Q Consensus       389 ~~Le~m~i~~~~  400 (431)
                      +.|+.+.+....
T Consensus       827 ~~L~~LdLs~N~  838 (876)
T 4ecn_A          827 PQLYILDIADNP  838 (876)
T ss_dssp             SSSCEEECCSCT
T ss_pred             CCCCEEECCCCC
Confidence            456666655443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.51  E-value=3.2e-05  Score=78.78  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=53.4

Q ss_pred             CceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCc
Q 014064          234 PNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKL  306 (431)
Q Consensus       234 p~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L  306 (431)
                      |+|+.|++++..+.    ..++.+++|+.+.+..+....    +......+++|+.|.++.+. +.  .+|..   +++|
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~L~~L~Ls~N~-l~--~i~~~~~~l~~L  326 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----LNLYGQPIPTLKVLDLSHNH-LL--HVERNQPQFDRL  326 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE----EECSSSCCTTCCEEECCSSC-CC--CCGGGHHHHTTC
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC----CCcccccCCCCcEEECCCCC-CC--ccCcccccCCCC
Confidence            55666666554321    234556666666655332221    11223557888888887776 33  22322   6788


Q ss_pred             cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeec
Q 014064          307 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN  343 (431)
Q Consensus       307 ~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~  343 (431)
                      +.|.|..+.-.  ..     -+..+|+|+.|++...+
T Consensus       327 ~~L~L~~N~l~--~~-----~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          327 ENLYLDHNSIV--TL-----KLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             SEEECCSSCCC--CC-----CCCTTCCCSEEECCSSC
T ss_pred             CEEECCCCCCC--Cc-----ChhhcCCCCEEEeeCCC
Confidence            88877554221  11     15567888888887654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.49  E-value=0.00029  Score=62.48  Aligned_cols=167  Identities=13%  Similarity=0.034  Sum_probs=95.2

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  238 (431)
                      ++|++|.|.+..++.-. ...+.++++|+.|.+.++..++.+.  .-..+++|+.|.+.+|..+..+.-    ..++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            47888888887665311 1135678888888888886444332  123457888888887555655542    3578888


Q ss_pred             EEEeceeeee--ecCCCCCce---eEEEEee-cCcchhhHHHhhhccCCCce-EEEeeeceeeeccccccc-C--CCccE
Q 014064          239 FKYIGQDINL--HVGSLPQLV---DVVFHVT-PMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE-F--PKLMN  308 (431)
Q Consensus       239 L~~~~~~~~~--~~~~~~~L~---~l~i~~~-~~~~~~~~~~~~~~~~~~l~-~L~l~~~~~~~~~~~~~~-~--~~L~~  308 (431)
                      |.+.+.....  .+..+++|+   .+.+..+ .....   -...+..+++|+ .|.++... +.  .++.. |  .+|++
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i---~~~~~~~l~~L~~~L~l~~n~-l~--~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI---PVNAFQGLCNETLTLKLYNNG-FT--SVQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE---CTTTTTTTBSSEEEEECCSCC-CC--EECTTTTTTCEEEE
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcchhhc---CcccccchhcceeEEEcCCCC-Cc--ccCHhhcCCCCCCE
Confidence            8888764321  145566666   6666644 21110   003356778888 88887665 32  22222 2  34555


Q ss_pred             EEEEEeecCcccHHHHHHHHhhC-CCcceEEEEe
Q 014064          309 LNISFTAANQETLLGLSFIMKAC-PFLEKLVLQI  341 (431)
Q Consensus       309 L~l~~~~~~~~~~~~l~~ll~~~-p~L~~L~i~~  341 (431)
                      |.+..+. .-....  ...+..+ ++|+.|++..
T Consensus       184 L~L~~n~-~l~~i~--~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          184 VYLNKNK-YLTVID--KDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             EECTTCT-TCCEEC--TTTTTTCSBCCSEEECTT
T ss_pred             EEcCCCC-CcccCC--HHHhhccccCCcEEECCC
Confidence            5543220 011110  1345667 8888888854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.49  E-value=6e-05  Score=64.88  Aligned_cols=129  Identities=22%  Similarity=0.283  Sum_probs=71.6

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc-eeeeecCCCCcceEEeeccCCcceEEEeCCceeE
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS  238 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~  238 (431)
                      ++..+++|++|.+.++.+.+-  . -++.+++|+.|.+.++.... ....-..+++|+.|.+.+|.- ..          
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i-~~----------  126 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH-DD----------  126 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC-BG----------
T ss_pred             HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc-Cc----------
Confidence            345678888888887755432  1 36678888888888765322 122223446666666665541 11          


Q ss_pred             EEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEE
Q 014064          239 FKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISF  313 (431)
Q Consensus       239 L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  313 (431)
                            ...-.+..+++|+.+.+..+......    ..+..+++|+.|.++.+. +........+++|++|.+..
T Consensus       127 ------~~~~~l~~l~~L~~L~L~~n~~i~~~----~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          127 ------SILTKINTLPKVNSIDLSYNGAITDI----MPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFS  190 (197)
T ss_dssp             ------GGHHHHTTCSSCCEEECCSCTBCCCC----GGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECB
T ss_pred             ------HhHHHHhhCCCCCEEEccCCCCcccc----HhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeC
Confidence                  00112345566666666544311111    235677888888887766 43322222377888887754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.46  E-value=0.00018  Score=73.85  Aligned_cols=191  Identities=10%  Similarity=0.070  Sum_probs=106.7

Q ss_pred             cCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEE-EcchhHHHHH------hcCCccceeeecc
Q 014064          127 KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVN-VTGEVVEFFI------HNCPLLENLRITQ  199 (431)
Q Consensus       127 ~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll------~~cp~Le~L~L~~  199 (431)
                      .+++.|++..+...              -.+|..+.++++|++|.|.++. +++..+..-+      ..+++|+.|.|.+
T Consensus       249 ~~L~~L~L~~n~l~--------------~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          249 KDLTDVEVYNCPNL--------------TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             TTCCEEEEECCTTC--------------SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             CCCCEEEecCCcCC--------------ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence            36888888765322              1245567889999999999997 7652232222      3469999999998


Q ss_pred             CCCCceee--eecCCCCcceEEeeccCCcceEE--EeCCceeEEEEeceeee---eecCCCCC-ceeEEEEeecCcchhh
Q 014064          200 SPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLSFKYIGQDIN---LHVGSLPQ-LVDVVFHVTPMVQKMH  271 (431)
Q Consensus       200 ~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~L~~~~~~~~---~~~~~~~~-L~~l~i~~~~~~~~~~  271 (431)
                      +.......  ....+++|+.|.+.++.-...+.  -..++|+.|.+.+....   -.+..+++ |+.+.+..+....   
T Consensus       315 n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~---  391 (636)
T 4eco_A          315 NNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY---  391 (636)
T ss_dssp             SCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS---
T ss_pred             CcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc---
Confidence            86432111  22356789999998876221332  12367888888776443   12445666 7777776443221   


Q ss_pred             HHHhhhcc--CCCceEEEeeeceeeeccccccc----------CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEE
Q 014064          272 CIGSIVSY--LPQLKTLELDGCNEVFAQFSQRE----------FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVL  339 (431)
Q Consensus       272 ~~~~~~~~--~~~l~~L~l~~~~~~~~~~~~~~----------~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i  339 (431)
                       +...+..  +++|+.|.++... +.. ..|..          ..+|++|.+..+.-  ....  ..++..+++|+.|++
T Consensus       392 -lp~~~~~~~l~~L~~L~Ls~N~-l~~-~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l--~~lp--~~~~~~l~~L~~L~L  464 (636)
T 4eco_A          392 -IPNIFDAKSVSVMSAIDFSYNE-IGS-VDGKNFDPLDPTPFKGINVSSINLSNNQI--SKFP--KELFSTGSPLSSINL  464 (636)
T ss_dssp             -CCSCCCTTCSSCEEEEECCSSC-TTT-TTTCSSCTTCSSCCCCCCEEEEECCSSCC--CSCC--THHHHTTCCCSEEEC
T ss_pred             -cchhhhhcccCccCEEECcCCc-CCC-cchhhhcccccccccCCCCCEEECcCCcc--CcCC--HHHHccCCCCCEEEC
Confidence             0011122  3367777776655 221 11111          22555555533211  1111  244556677777776


Q ss_pred             Ee
Q 014064          340 QI  341 (431)
Q Consensus       340 ~~  341 (431)
                      ..
T Consensus       465 s~  466 (636)
T 4eco_A          465 MG  466 (636)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.46  E-value=2.7e-05  Score=76.23  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=35.7

Q ss_pred             cCCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064           20 LEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        20 ~~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l   57 (431)
                      ..|.|+.||+||+.+||+||+.+++++++.|||+|+++
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKI   48 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHH
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36889999999999999999999999999999999875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.43  E-value=2.8e-05  Score=72.20  Aligned_cols=215  Identities=12%  Similarity=0.111  Sum_probs=109.4

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHh--cCCccceeeeccCCCCcee--eee-cCCCCcceEEeeccCCcce------EE-Ee
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIH--NCPLLENLRITQSPDLLSL--KVV-GSSIPLKCLDIQFCYSIKE------IE-IS  232 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~l--~i~-~~~~~L~~L~l~~c~~l~~------i~-i~  232 (431)
                      ..++.|.+..+.+++..+..+..  .++.|++|.+.+|...+..  .+. ..+++|+.|.+.++.-...      .. ..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            45677777777776655544432  3566888888777532221  111 3446788888877652110      10 13


Q ss_pred             CCceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEeeeceeeec-cc----cccc
Q 014064          233 APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFA-QF----SQRE  302 (431)
Q Consensus       233 ap~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~-~~----~~~~  302 (431)
                      .++|++|.+.+..+.    -.+..+++|+.+.+..+...+...... ..+..+++|+.|.++.+. +.. ..    +...
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhc
Confidence            577888888766432    234467778777777543221111111 223567778888877765 321 11    1112


Q ss_pred             CCCccEEEEEEeecCcccHHHHHHHHhhC---CCcceEEEEeeccccccCCCCcccccCccCCccEEEEeeeecCchhHH
Q 014064          303 FPKLMNLNISFTAANQETLLGLSFIMKAC---PFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFE  379 (431)
Q Consensus       303 ~~~L~~L~l~~~~~~~~~~~~l~~ll~~~---p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~  379 (431)
                      +++|++|.|+.+.-.....    .-+..+   |+|++|.+....-.       ..+. ...++|+.+.+.+-.-+.-.  
T Consensus       223 l~~L~~L~Ls~N~l~~~~p----~~~~~~~~~~~L~~L~Ls~N~l~-------~lp~-~~~~~L~~L~Ls~N~l~~~~--  288 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVN----PSAPRCMWSSALNSLNLSFAGLE-------QVPK-GLPAKLRVLDLSSNRLNRAP--  288 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCC----SCCSSCCCCTTCCCEECCSSCCC-------SCCS-CCCSCCSCEECCSCCCCSCC--
T ss_pred             CCCCCEEECCCCCCCccch----hhHHhccCcCcCCEEECCCCCCC-------chhh-hhcCCCCEEECCCCcCCCCc--
Confidence            5677777774432111100    111233   67888877543211       1111 11256777766552211100  


Q ss_pred             HHHHHHhcCcccccEEEEe
Q 014064          380 LAFYVFENATMLEKMIIKP  398 (431)
Q Consensus       380 l~~~ll~~a~~Le~m~i~~  398 (431)
                          .....+.|+.+.+..
T Consensus       289 ----~~~~l~~L~~L~L~~  303 (310)
T 4glp_A          289 ----QPDELPEVDNLTLDG  303 (310)
T ss_dssp             ----CTTSCCCCSCEECSS
T ss_pred             ----hhhhCCCccEEECcC
Confidence                024557777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.40  E-value=4.1e-05  Score=79.13  Aligned_cols=36  Identities=17%  Similarity=0.036  Sum_probs=15.7

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      ++|+.|.|.++.+.+-. ...+..+++|+.|.|.++.
T Consensus       381 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~  416 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNE  416 (680)
T ss_dssp             SCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred             CcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCc
Confidence            34555555544333210 1123445555555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.40  E-value=0.00045  Score=73.27  Aligned_cols=40  Identities=13%  Similarity=0.187  Sum_probs=22.5

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  200 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  200 (431)
                      +.++++|++|.|.++.+.+......++.+++|+.|.|.++
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            4556666666666665544323333556666666666554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.39  E-value=3.7e-05  Score=79.50  Aligned_cols=16  Identities=19%  Similarity=0.326  Sum_probs=10.4

Q ss_pred             HhcCcccccEEEEeCC
Q 014064          385 FENATMLEKMIIKPSG  400 (431)
Q Consensus       385 l~~a~~Le~m~i~~~~  400 (431)
                      +.+.+.|+++.+....
T Consensus       580 ~~~l~~L~~L~L~~N~  595 (680)
T 1ziw_A          580 FNNQVSLKSLNLQKNL  595 (680)
T ss_dssp             TTTCTTCCEEECTTSC
T ss_pred             hCCCCCCCEEECCCCc
Confidence            3566777777776553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.34  E-value=4e-05  Score=71.78  Aligned_cols=14  Identities=29%  Similarity=0.339  Sum_probs=9.1

Q ss_pred             HhhCCCcceEEEEe
Q 014064          328 MKACPFLEKLVLQI  341 (431)
Q Consensus       328 l~~~p~L~~L~i~~  341 (431)
                      +..+|+|+.|++..
T Consensus       237 ~~~l~~L~~L~L~~  250 (332)
T 2ft3_A          237 LSFLPTLRELHLDN  250 (332)
T ss_dssp             GGGCTTCCEEECCS
T ss_pred             hhCCCCCCEEECCC
Confidence            45667777777754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.33  E-value=5.5e-05  Score=70.88  Aligned_cols=223  Identities=14%  Similarity=0.053  Sum_probs=111.3

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCc
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPN  235 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~  235 (431)
                      .+.++++|++|.|.+..+++- ....+..+++|+.|.|.++.- +.+..... ++|++|.+.++. +..+.-    ..++
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNLP-SSLVELRIHDNR-IRKVPKGVFSGLRN  148 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSCC-TTCCEEECCSSC-CCCCCSGGGSSCSS
T ss_pred             HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCcccc-ccCCEEECCCCc-cCccCHhHhCCCcc
Confidence            456777888888877755432 112356677888888777642 22111111 567777776654 222211    2356


Q ss_pred             eeEEEEeceeee---e---ecCCC--------------------CCceeEEEEeecCcchhhHHHhhhccCCCceEEEee
Q 014064          236 LLSFKYIGQDIN---L---HVGSL--------------------PQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELD  289 (431)
Q Consensus       236 L~~L~~~~~~~~---~---~~~~~--------------------~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~  289 (431)
                      |+.|++.+....   .   .+..+                    ++|+.+.+..+.....   ....+..+++|+.|.++
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~---~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI---ELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC---CTTSSTTCTTCSCCBCC
T ss_pred             CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc---CHHHhcCCCCCCEEECC
Confidence            666666554321   0   11111                    2344444332211100   00234667788888887


Q ss_pred             eceeeeccc--ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc--ccCccCCccE
Q 014064          290 GCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI--SKHSHQHLKL  365 (431)
Q Consensus       290 ~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~--~~~~~~~L~~  365 (431)
                      ... +....  ....+++|++|.+..+.-.     .+..-+..+++|+.|++....-... .......  ......+|+.
T Consensus       226 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~  298 (332)
T 2ft3_A          226 HNQ-IRMIENGSLSFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNG  298 (332)
T ss_dssp             SSC-CCCCCTTGGGGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSE
T ss_pred             CCc-CCcCChhHhhCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCCCCCcc-ChhHccccccccccccccc
Confidence            765 32211  1122678888888553211     2223467899999999976421111 1010100  0122467888


Q ss_pred             EEEeeeecCchhHHHHHHHHhcCcccccEEEEe
Q 014064          366 VELQGFNGREIDFELAFYVFENATMLEKMIIKP  398 (431)
Q Consensus       366 v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~  398 (431)
                      +.+.+-.....  ......+.+.+.|+.+.+..
T Consensus       299 L~l~~N~~~~~--~~~~~~~~~l~~L~~l~l~~  329 (332)
T 2ft3_A          299 ISLFNNPVPYW--EVQPATFRCVTDRLAIQFGN  329 (332)
T ss_dssp             EECCSSSSCGG--GSCGGGGTTBCCSTTEEC--
T ss_pred             eEeecCccccc--ccCcccccccchhhhhhccc
Confidence            88877433311  11112345677788776643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.33  E-value=0.00014  Score=65.86  Aligned_cols=82  Identities=18%  Similarity=0.112  Sum_probs=50.7

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~a  233 (431)
                      .+.++++|++|.|.+..++.- -..++..++.|+.|.|.++.. ..+.  ....+++|+.|.+.++. +..+.-    ..
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  132 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSL  132 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcC
Confidence            567889999999998876531 123457789999999988753 2221  11244778888887764 222211    23


Q ss_pred             CceeEEEEece
Q 014064          234 PNLLSFKYIGQ  244 (431)
Q Consensus       234 p~L~~L~~~~~  244 (431)
                      ++|++|++.+.
T Consensus       133 ~~L~~L~Ls~n  143 (270)
T 2o6q_A          133 TKLTYLSLGYN  143 (270)
T ss_dssp             TTCCEEECCSS
T ss_pred             cCCCEEECCCC
Confidence            55555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.32  E-value=7.1e-05  Score=69.50  Aligned_cols=39  Identities=31%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHH-HhcCCccceeeeccCC
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFF-IHNCPLLENLRITQSP  201 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~L~~~~  201 (431)
                      ++++|++|.|.+..+++..-..+ +..+++|+.|.|.++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~  132 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS  132 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence            35666666666666554221111 2556666666666653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.24  E-value=0.00012  Score=71.10  Aligned_cols=38  Identities=21%  Similarity=0.438  Sum_probs=35.6

Q ss_pred             cCCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064           20 LEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        20 ~~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l   57 (431)
                      ..|.++.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            46899999999999999999999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.19  E-value=8.1e-05  Score=72.32  Aligned_cols=36  Identities=22%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             CCcCCCCCHH----HHHHHHhcCChHHHHHHHHHhhhhhh
Q 014064           21 EDWFSRFPDD----ILIHIISGLTLKEAARTSVLSSRWKY   56 (431)
Q Consensus        21 ~D~is~LPd~----lL~~Ils~L~~~~~~r~s~vSrrWr~   56 (431)
                      .|.|+.||+|    |+.+||+||+.+++++++.|||+|++
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            6889999999    99999999999999999999999995

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.19  E-value=0.0008  Score=67.79  Aligned_cols=100  Identities=15%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-----eCC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-----SAP  234 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-----~ap  234 (431)
                      .+.++++|++|.|.+..+++-. ...+.++++|+.|+|.++.- +.+.-. .+++|+.|.++++. +..+.+     ..+
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~  146 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNRL-QNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLT  146 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSCC-CEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCT
T ss_pred             hhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCcC-CccCcc-ccccCCEEECCCCC-ccccCchHhhcccC
Confidence            3456677777777766554311 12245667777777766642 222211 44667777766665 333221     235


Q ss_pred             ceeEEEEeceeee-eecCCCCCc--eeEEEEe
Q 014064          235 NLLSFKYIGQDIN-LHVGSLPQL--VDVVFHV  263 (431)
Q Consensus       235 ~L~~L~~~~~~~~-~~~~~~~~L--~~l~i~~  263 (431)
                      +|++|++.+..+. ..+..+++|  +.+.+..
T Consensus       147 ~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          147 KLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             TCCEEEEECSBCCTTTTGGGTTSCEEEEEEEE
T ss_pred             cccEEecCCCccccCchhhhhhceeeEEEeec
Confidence            6666666655332 122333344  5555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.17  E-value=8.9e-05  Score=62.51  Aligned_cols=79  Identities=15%  Similarity=0.110  Sum_probs=43.9

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL  237 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~  237 (431)
                      ..+++|++|.|.++.++.  +..+...+|.|+.|.+.++. ++.+..-..+++|+.|.++++. +..+.-    ..|+|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence            355778888888776653  23333445588888887774 3333222345667777776665 333321    234555


Q ss_pred             EEEEece
Q 014064          238 SFKYIGQ  244 (431)
Q Consensus       238 ~L~~~~~  244 (431)
                      +|.+.+.
T Consensus        92 ~L~L~~N   98 (176)
T 1a9n_A           92 ELILTNN   98 (176)
T ss_dssp             EEECCSC
T ss_pred             EEECCCC
Confidence            5555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.16  E-value=0.0003  Score=62.33  Aligned_cols=166  Identities=11%  Similarity=0.082  Sum_probs=96.8

Q ss_pred             CCCCCCCCCEEEEeeEE-EcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEE--EeCC
Q 014064          160 GLSGIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE--ISAP  234 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~--i~ap  234 (431)
                      .+.++++|++|.|.+.. ++.-. ...+.++++|+.|.+.+|..++.+.  .-..+++|+.|.+.++. +..+.  -..+
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence            45688999999999875 43211 1135789999999999865555443  12245889999998875 22221  1234


Q ss_pred             cee---EEEEece-eee-e---ecCCCCCce-eEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccc-c--
Q 014064          235 NLL---SFKYIGQ-DIN-L---HVGSLPQLV-DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR-E--  302 (431)
Q Consensus       235 ~L~---~L~~~~~-~~~-~---~~~~~~~L~-~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-~--  302 (431)
                      +|+   +|++.+. .+. +   .+.++++|+ .+.+..+.... +..  ..+.. ++|+.|.++....+.  .++. .  
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~--~~~~~-~~L~~L~L~~n~~l~--~i~~~~~~  201 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQG--YAFNG-TKLDAVYLNKNKYLT--VIDKDAFG  201 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECT--TTTTT-CEEEEEECTTCTTCC--EECTTTTT
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCH--hhcCC-CCCCEEEcCCCCCcc--cCCHHHhh
Confidence            565   8888876 442 2   355678888 77776433221 000  22233 789999997763122  2222 1  


Q ss_pred             -C-CCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEE
Q 014064          303 -F-PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ  340 (431)
Q Consensus       303 -~-~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~  340 (431)
                       + ++|+.|.+..+.-  .....     ..+++|+.|.+.
T Consensus       202 ~l~~~L~~L~l~~N~l--~~l~~-----~~~~~L~~L~l~  234 (239)
T 2xwt_C          202 GVYSGPSLLDVSQTSV--TALPS-----KGLEHLKELIAR  234 (239)
T ss_dssp             TCSBCCSEEECTTCCC--CCCCC-----TTCTTCSEEECT
T ss_pred             ccccCCcEEECCCCcc--ccCCh-----hHhccCceeecc
Confidence             3 5677777643211  11111     156788888764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.07  E-value=0.00024  Score=69.65  Aligned_cols=153  Identities=15%  Similarity=0.113  Sum_probs=99.7

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEece
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ  244 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~  244 (431)
                      ++|++|.+.++.+..  +.. +..++.|+.|.+.++.-. .  +....++|+.|.+.++. +..+.-..++|+.|++++.
T Consensus       215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~-~--l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLK-T--LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-S--CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCC-c--ccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence            689999999887763  322 678999999999987532 2  22233789999998876 4444334578999998877


Q ss_pred             eeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHH
Q 014064          245 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGL  324 (431)
Q Consensus       245 ~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l  324 (431)
                      .....-.-.++|+.+.+..+...       .+....++|+.|.++... +.  .++..+++|+.|.++.+.-.  ...  
T Consensus       288 ~l~~l~~~~~~L~~L~l~~N~l~-------~i~~~~~~L~~L~Ls~N~-l~--~lp~~~~~L~~L~L~~N~l~--~lp--  353 (454)
T 1jl5_A          288 IFSGLSELPPNLYYLNASSNEIR-------SLCDLPPSLEELNVSNNK-LI--ELPALPPRLERLIASFNHLA--EVP--  353 (454)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCS-------EECCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSCCS--CCC--
T ss_pred             ccCcccCcCCcCCEEECcCCcCC-------cccCCcCcCCEEECCCCc-cc--cccccCCcCCEEECCCCccc--ccc--
Confidence            54321122367888877744332       222222588999987766 33  25555788999888654221  221  


Q ss_pred             HHHHhhCCCcceEEEEee
Q 014064          325 SFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       325 ~~ll~~~p~L~~L~i~~~  342 (431)
                       .   .+++|++|++...
T Consensus       354 -~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          354 -E---LPQNLKQLHVEYN  367 (454)
T ss_dssp             -C---CCTTCCEEECCSS
T ss_pred             -c---hhhhccEEECCCC
Confidence             1   4689999998764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.03  E-value=0.0015  Score=65.74  Aligned_cols=119  Identities=18%  Similarity=0.155  Sum_probs=82.5

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE-eCCceeEEEE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY  241 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~L~~  241 (431)
                      ++|++|.|.+..+++-. ..-+.++++|+.|.|.++. ++.+..  -..+++|+.|+++++. +..+.- ..++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence            89999999999876432 1236789999999999985 333211  2345899999999886 443321 5689999999


Q ss_pred             eceeee-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCc--eEEEeeece
Q 014064          242 IGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL--KTLELDGCN  292 (431)
Q Consensus       242 ~~~~~~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l--~~L~l~~~~  292 (431)
                      ++..+.     -.++++++|+.+.+..+....      .-+..++++  +.|.+....
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ------LDLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT------TTTGGGTTSCEEEEEEEESS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc------CchhhhhhceeeEEEeeccc
Confidence            887542     246788999999998654332      112334444  888887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.02  E-value=0.00034  Score=63.20  Aligned_cols=143  Identities=12%  Similarity=0.142  Sum_probs=96.6

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-EeCCceeEEE
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFK  240 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~L~  240 (431)
                      ..+++|++|.+.++.+++-  . -+..+++|+.|.|.++.- +.+.-...+++|+.|.++++. +..+. +..++|+.|.
T Consensus        38 ~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~  112 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLF  112 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEE
T ss_pred             hhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEE
Confidence            4678999999998877642  2 367889999999988853 222213456889999998876 22211 1128899999


Q ss_pred             Eeceeeee--ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEee
Q 014064          241 YIGQDINL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTA  315 (431)
Q Consensus       241 ~~~~~~~~--~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  315 (431)
                      +.+..+..  .+..+++|+.+.+..+...+.     ..+..+++|+.|.++... +........+++|+.|.+..+.
T Consensus       113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred             ccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence            98875421  366788899888875543321     345778999999998877 4433222337788888887654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=96.98  E-value=0.00026  Score=64.91  Aligned_cols=163  Identities=15%  Similarity=0.122  Sum_probs=93.3

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCc
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPN  235 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~  235 (431)
                      .+.++++|++|.|.+..++.-..   ...++.|+.|.|.++..-........+++|+.|.+.++. +..+.-    ..++
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~  125 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGE  125 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTT
T ss_pred             HhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCC
Confidence            45678999999998886654211   167899999999887532211222345788888888775 333321    2367


Q ss_pred             eeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCccE
Q 014064          236 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN  308 (431)
Q Consensus       236 L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~~  308 (431)
                      |++|.+.+..+.    ..+..+++|+.+.+..+.....   -...+..+++|+.|.++... +.  .+|..   ..+|+.
T Consensus       126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l---~~~~~~~l~~L~~L~L~~N~-l~--~ip~~~~~~~~L~~  199 (290)
T 1p9a_G          126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL---PAGLLNGLENLDTLLLQENS-LY--TIPKGFFGSHLLPF  199 (290)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC---CTTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCCCSE
T ss_pred             CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc---CHHHhcCcCCCCEEECCCCc-CC--ccChhhcccccCCe
Confidence            888887776442    1234567777777664332210   00345667788888887665 32  23333   345666


Q ss_pred             EEEEEee-cCcccHHHHHHHHhhCC
Q 014064          309 LNISFTA-ANQETLLGLSFIMKACP  332 (431)
Q Consensus       309 L~l~~~~-~~~~~~~~l~~ll~~~p  332 (431)
                      |.|..+. ....+...+...++.-+
T Consensus       200 l~L~~Np~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          200 AFLHGNPWLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             EECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             EEeCCCCccCcCccHHHHHHHHhCc
Confidence            6664321 11133444555555433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.95  E-value=0.00056  Score=61.16  Aligned_cols=123  Identities=14%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCCceeEE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLSF  239 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~L  239 (431)
                      ++|++|.|.+..+.+-. ...+..+++|+.|.|.++..-... ..-..+++|+.|.+.++. +..+..    ..++|++|
T Consensus        35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence            56777777776654321 122556777777777766421111 001234566777666654 222211    23566666


Q ss_pred             EEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          240 KYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       240 ~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      .+.+..+. +   .+..+++|+.+.+..+......   ...+..+++|+.|+++...
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP---AGAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCccC---HHHcCcCcCCCEEECCCCc
Confidence            66554332 1   1334556666555533221100   0233455666666665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.94  E-value=7e-05  Score=71.44  Aligned_cols=165  Identities=18%  Similarity=0.158  Sum_probs=83.9

Q ss_pred             CCCCEEEEeeEEEcchh---HHHHHh-cCCccceeeeccCCCCc-ee-eeecCCCCcceEEeeccCCcceEEEeCCceeE
Q 014064          165 KSLRSLTLCAVNVTGEV---VEFFIH-NCPLLENLRITQSPDLL-SL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~---l~~ll~-~cp~Le~L~L~~~~~~~-~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~  238 (431)
                      ++|++|.|.++.+++..   +...+. .++.|++|+|.+|..-. .+ .+...+++|+.|.+.+|. +......+  |  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~--L--  146 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKD--L--  146 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHH--H--
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHH--H--
Confidence            67788888887776543   334444 34688888887775211 01 111112456666666554 11000000  0  


Q ss_pred             EEEeceeeeeecCCCCCceeEEEEeecCcc-hhhHHHhhhccCCCceEEEeeeceeeeccc---cc---ccCCCccEEEE
Q 014064          239 FKYIGQDINLHVGSLPQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQ---REFPKLMNLNI  311 (431)
Q Consensus       239 L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~-~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~---~~~~~L~~L~l  311 (431)
                             ........++|+.+.+..+.... ....+...+..+++|+.|+++.+. +....   +.   ...++|++|.|
T Consensus       147 -------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~L  218 (372)
T 3un9_A          147 -------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNV  218 (372)
T ss_dssp             -------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred             -------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEEC
Confidence                   00000123445555554332211 112233445667778888887765 33211   11   12457777777


Q ss_pred             EEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          312 SFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       312 ~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      +.+.-.......+...+..+|+|++|++...
T Consensus       219 s~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          219 AYNGAGDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            6543222333456777888999999998654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.89  E-value=0.00052  Score=67.25  Aligned_cols=158  Identities=15%  Similarity=0.040  Sum_probs=102.3

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEE
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  239 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L  239 (431)
                      .+.++++|++|.+.+..+++  +.   ...+.|+.|.+.+|.. ..+.-...+++|+.|.+.++. +..+.-..++|++|
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L  262 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKK--LP---DLPLSLESIVAGNNIL-EELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEAL  262 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEE
T ss_pred             cccCCCCCCEEECCCCcCCc--CC---CCcCcccEEECcCCcC-CcccccCCCCCCCEEECCCCc-CCcccccccccCEE
Confidence            57889999999999887764  11   2346899999999853 233223356899999999876 33333234899999


Q ss_pred             EEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcc
Q 014064          240 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE  319 (431)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  319 (431)
                      ++.+......-...++|+.+.+..+...       .+....++|+.|.++... +..  ++...++|+.|.++.+.-.  
T Consensus       263 ~l~~N~l~~l~~~~~~L~~L~ls~N~l~-------~l~~~~~~L~~L~l~~N~-l~~--i~~~~~~L~~L~Ls~N~l~--  330 (454)
T 1jl5_A          263 NVRDNYLTDLPELPQSLTFLDVSENIFS-------GLSELPPNLYYLNASSNE-IRS--LCDLPPSLEELNVSNNKLI--  330 (454)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCS-------EESCCCTTCCEEECCSSC-CSE--ECCCCTTCCEEECCSSCCS--
T ss_pred             ECCCCcccccCcccCcCCEEECcCCccC-------cccCcCCcCCEEECcCCc-CCc--ccCCcCcCCEEECCCCccc--
Confidence            9987754322223577888888754333       222233689999998776 322  2332368999988553211  


Q ss_pred             cHHHHHHHHhhCCCcceEEEEee
Q 014064          320 TLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       320 ~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      ...      ..+++|++|++...
T Consensus       331 ~lp------~~~~~L~~L~L~~N  347 (454)
T 1jl5_A          331 ELP------ALPPRLERLIASFN  347 (454)
T ss_dssp             CCC------CCCTTCCEEECCSS
T ss_pred             ccc------ccCCcCCEEECCCC
Confidence            111      13589999999654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.79  E-value=0.00052  Score=61.38  Aligned_cols=128  Identities=14%  Similarity=0.105  Sum_probs=81.2

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAP  234 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap  234 (431)
                      .+.++++|++|.|.+..+++- ....+..+++|+.|.|.++...... ..-..+++|+.|.+.++. +..+.-    ..+
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  131 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT  131 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence            456788999999988876542 1233567889999999887532111 111345788888888775 443321    247


Q ss_pred             ceeEEEEeceeee-e---ecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          235 NLLSFKYIGQDIN-L---HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       235 ~L~~L~~~~~~~~-~---~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      +|+.|.+.+..+. +   .+..+++|+.+.+..+......   ...+..+++|+.|.+.+..
T Consensus       132 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          132 KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP---HGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSCC
T ss_pred             cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC---HHHHhCCCCCCEEEeeCCc
Confidence            8899998877542 1   3567788998888754332110   0234566677777776655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=96.78  E-value=0.00016  Score=60.26  Aligned_cols=100  Identities=18%  Similarity=0.138  Sum_probs=50.5

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEE-----EeCC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE-----ISAP  234 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~-----i~ap  234 (431)
                      +..+++|+.|.|.++.+++-   ..+..+++|+.|.|.+|.....+ .....+++|+.|.+.++. +..+.     -..|
T Consensus        45 ~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~  120 (168)
T 2ell_A           45 TAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLE  120 (168)
T ss_dssp             CGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCS
T ss_pred             HHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCC
Confidence            34556666666666655432   33455666666666655432211 111124566666666554 22211     1235


Q ss_pred             ceeEEEEeceeee-------eecCCCCCceeEEEEee
Q 014064          235 NLLSFKYIGQDIN-------LHVGSLPQLVDVVFHVT  264 (431)
Q Consensus       235 ~L~~L~~~~~~~~-------~~~~~~~~L~~l~i~~~  264 (431)
                      +|+.|++.+..+.       ..+..+++|+.+.+..+
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            6666666655321       13556777777766643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.77  E-value=2.3e-05  Score=67.65  Aligned_cols=60  Identities=18%  Similarity=0.184  Sum_probs=33.6

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~  224 (431)
                      +..+++|++|.|.+..+++  +. .+..+++|+.|.+.+|.. +.+ .....+++|+.|.+.++.
T Consensus        44 ~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~  104 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEE
T ss_pred             HhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCc
Confidence            3456777777777777665  22 356677777777776632 111 111112456666665553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.73  E-value=0.00049  Score=69.24  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  242 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  242 (431)
                      .+++|++|.|.+..+++  +.. +..  +|+.|.|.++.. +.+.-  .+++|+.|.++++. +..+.-..++|+.|.++
T Consensus        98 ~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls  168 (571)
T 3cvr_A           98 LPASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQL-TMLPE--LPALLEYINADNNQ-LTMLPELPTSLEVLSVR  168 (571)
T ss_dssp             CCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCC-SCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred             ccCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcC-CCCCC--cCccccEEeCCCCc-cCcCCCcCCCcCEEECC
Confidence            34555555555554443  111 111  555555555432 11111  23556666655554 22222233456666555


Q ss_pred             ce
Q 014064          243 GQ  244 (431)
Q Consensus       243 ~~  244 (431)
                      ++
T Consensus       169 ~N  170 (571)
T 3cvr_A          169 NN  170 (571)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.56  E-value=0.00071  Score=58.47  Aligned_cols=145  Identities=15%  Similarity=0.075  Sum_probs=74.1

Q ss_pred             CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064          164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY  241 (431)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  241 (431)
                      .++|++|.|.+..+++- ....+..+++|+.|.+.++.. +.+..  -..+++|+.|.+.++. +..+.-          
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----------   93 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN----------   93 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccCH----------
Confidence            46788888888776532 123356788888888887642 22211  1234667777766654 221110          


Q ss_pred             eceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEEEEeecCcc
Q 014064          242 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQE  319 (431)
Q Consensus       242 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~  319 (431)
                            ..+..+++|+.+.+..+.....   ....+..+++|+.|.++... +....  ....+++|++|.+..+.    
T Consensus        94 ------~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~----  159 (208)
T 2o6s_A           94 ------GVFDKLTQLKELALNTNQLQSL---PDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP----  159 (208)
T ss_dssp             ------TTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC----
T ss_pred             ------hHhcCccCCCEEEcCCCcCccc---CHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC----
Confidence                  1123444455444442221100   00234567777888776655 32110  01125566666664321    


Q ss_pred             cHHHHHHHHhhCCCcceEEEEee
Q 014064          320 TLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       320 ~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                             +...||+|+.|.+...
T Consensus       160 -------~~~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          160 -------WDCTCPGIRYLSEWIN  175 (208)
T ss_dssp             -------BCCCTTTTHHHHHHHH
T ss_pred             -------eecCCCCHHHHHHHHH
Confidence                   1135677777766553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.55  E-value=0.0043  Score=58.34  Aligned_cols=60  Identities=12%  Similarity=0.024  Sum_probs=34.6

Q ss_pred             hhhccCCCceEEEeeeceeeeccccccc-CCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          275 SIVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       275 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      +.+..+++|+.|+++... +.  .+|.. |.+|++|.+..... ....   . -+.+.++|+.+++...
T Consensus       196 ~~f~~l~~L~~LdLs~N~-l~--~lp~~~~~~L~~L~~l~~~~-l~~l---P-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          196 DVFHGASGPVILDISRTR-IH--SLPSYGLENLKKLRARSTYN-LKKL---P-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTTTEECCSEEECTTSC-CC--CCCSSSCTTCCEEECTTCTT-CCCC---C-CTTTCCSCCEEECSCH
T ss_pred             HHhccCcccchhhcCCCC-cC--ccChhhhccchHhhhccCCC-cCcC---C-CchhCcChhhCcCCCC
Confidence            345677788888887765 32  33333 77888887522211 1111   1 1456778888877543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.38  E-value=0.00048  Score=59.56  Aligned_cols=81  Identities=16%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAP  234 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap  234 (431)
                      +.++++|++|.|.+..+++- ....+..+++|+.|.|.++.. +.+.  .-..+++|+.|.+.++. +..+.-    ..+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  124 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLT  124 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCC
Confidence            46789999999998876532 223467789999999988753 2221  11244778888877664 222211    124


Q ss_pred             ceeEEEEece
Q 014064          235 NLLSFKYIGQ  244 (431)
Q Consensus       235 ~L~~L~~~~~  244 (431)
                      +|+.|++.+.
T Consensus       125 ~L~~L~l~~N  134 (208)
T 2o6s_A          125 QLKDLRLYQN  134 (208)
T ss_dssp             TCCEEECCSS
T ss_pred             cCCEEECCCC
Confidence            5555555544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.34  E-value=0.017  Score=58.47  Aligned_cols=77  Identities=14%  Similarity=0.128  Sum_probs=44.8

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEe----CCceeE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEIS----APNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~----ap~L~~  238 (431)
                      +++++|.|++..++.-. ..-++++++|+.|+|.+|. ++.+.-  -..+++|+.|.+.++. +..+...    .++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCE
Confidence            47899999887664310 1125778999999998884 333221  1245677777777764 4433221    244555


Q ss_pred             EEEece
Q 014064          239 FKYIGQ  244 (431)
Q Consensus       239 L~~~~~  244 (431)
                      |++.+.
T Consensus       129 L~Ls~N  134 (635)
T 4g8a_A          129 LVAVET  134 (635)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            544443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.30  E-value=0.00021  Score=58.31  Aligned_cols=114  Identities=16%  Similarity=0.089  Sum_probs=64.5

Q ss_pred             CCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCc
Q 014064          157 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPN  235 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~  235 (431)
                      +|..+..+++|+.|.|.++.+++-   ..+..++.|+.|.+.++.....+ .....+++|+.|.+.++. +..+..    
T Consensus        34 ~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~----  105 (149)
T 2je0_A           34 LEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLST----  105 (149)
T ss_dssp             CCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHH----
T ss_pred             HHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHH----
Confidence            344456789999999998877654   44678899999999888643311 111234677777777665 222100    


Q ss_pred             eeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEee
Q 014064          236 LLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELD  289 (431)
Q Consensus       236 L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~  289 (431)
                                 ...+..+++|+.+.+..+...+...+....+..+++|+.|+++
T Consensus       106 -----------~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          106 -----------IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             -----------HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             -----------HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                       0123345555555554332222112212455677777777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.24  E-value=0.0016  Score=57.33  Aligned_cols=125  Identities=15%  Similarity=0.092  Sum_probs=67.3

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  242 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  242 (431)
                      ++|++|.|.+..+.+- ....+..+++|+.|.|.++.. +.+..  -..+++|+.|.+.++. +..+.-           
T Consensus        40 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~-----------  105 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPS-----------  105 (229)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT-----------
T ss_pred             CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccCh-----------
Confidence            8899999998877642 123367789999999988753 32211  1234677777776654 222211           


Q ss_pred             ceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEEEE
Q 014064          243 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISF  313 (431)
Q Consensus       243 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~  313 (431)
                           ..+..+++|+.+.+..+....    +..-+..+++|+.|.++... +....  ....+++|+.|.+..
T Consensus       106 -----~~~~~l~~L~~L~Ls~N~l~~----lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          106 -----AVFDRLVHLKELFMCCNKLTE----LPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             -----TTTTTCTTCCEEECCSSCCCS----CCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTT
T ss_pred             -----hHhCcchhhCeEeccCCcccc----cCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeC
Confidence                 112334444444444322110    01223566778888877665 32111  111256667666643

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.22  E-value=0.0021  Score=56.20  Aligned_cols=145  Identities=11%  Similarity=0.027  Sum_probs=69.2

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee--eeecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  242 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l--~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  242 (431)
                      ++|+.|.|.+..++.-. ...+..+++|+.|.|.++.. ..+  ..-..+++|+.|.++++. +..+.-           
T Consensus        32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-----------   97 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK-ITELPK-----------   97 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCSSC-CCCCCT-----------
T ss_pred             cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCCCc-CCccCH-----------
Confidence            67888888877654311 11356678888888887742 221  111233566666666553 222110           


Q ss_pred             ceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc--ccccCCCccEEEEEEee-cCcc
Q 014064          243 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTA-ANQE  319 (431)
Q Consensus       243 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~  319 (431)
                           ..+.++++|+.+.+..+......   ...+..+++|+.|.++... +....  ....+++|++|.|..+. ....
T Consensus        98 -----~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           98 -----SLFEGLFSLQLLLLNANKINCLR---VDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             -----TTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             -----hHccCCCCCCEEECCCCCCCEeC---HHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence                 11233444554444432211100   0234556677777776655 22111  01114566666664321 1113


Q ss_pred             cHHHHHHHHhhCC
Q 014064          320 TLLGLSFIMKACP  332 (431)
Q Consensus       320 ~~~~l~~ll~~~p  332 (431)
                      ...++...++.-+
T Consensus       169 ~l~~l~~~l~~~~  181 (220)
T 2v9t_B          169 HLKWLADYLHTNP  181 (220)
T ss_dssp             GGHHHHHHHHHCC
T ss_pred             ccHHHHHHHHhCC
Confidence            4455555665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.13  E-value=0.009  Score=49.92  Aligned_cols=131  Identities=13%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             hcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEeec
Q 014064          187 HNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP  265 (431)
Q Consensus       187 ~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~  265 (431)
                      ..|+.|+.|.+.++.. +.+ .+....++|+.|.++++. +..+.                  .+..+++|+.+.+..+.
T Consensus        16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~------------------~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLD------------------GFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEEC------------------CCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCccc------------------ccccCCCCCEEECCCCc
Confidence            3588899999988843 222 122222478888877765 33331                  12234444444444322


Q ss_pred             CcchhhHHHhhhccCCCceEEEeeeceeeeccc---ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          266 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      .....   ..++..+++|+.|.++... +....   ....+++|+.|.+..+.-.. ....-..++..+|+|+.|++...
T Consensus        76 l~~~~---~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           76 ICRIG---EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEEC---SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEEC
T ss_pred             ccccC---cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcC
Confidence            11100   0233566777777776665 32111   11126677777765432111 11112346788899998888664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.13  E-value=0.0066  Score=56.45  Aligned_cols=94  Identities=12%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             eeEEEEEEecCCCCCccHhHHHHHHhhcCceEEEEEcCCCC--CCCcccccccc---ccccCCCC-CCCC--------CC
Q 014064          100 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT--YDNYYEIPQEC---YKNLQSGC-GLSG--------IK  165 (431)
Q Consensus       100 l~~l~l~~~~~~~~~~~~~~wi~~~~~~~v~eL~l~~~~~~--~~~~~~lp~~~---~~~l~lp~-~~~~--------~~  165 (431)
                      |..+.+......   ..+ .++... ..+++.|++....-.  ......+|...   +....+|. .+.+        ++
T Consensus        27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence            788888654322   111 222221 347999999766432  11111222200   11123443 4556        89


Q ss_pred             CCCEEEEeeEEEcchhH-HHHHhcCCccceeeeccCC
Q 014064          166 SLRSLTLCAVNVTGEVV-EFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       166 ~L~~L~L~~~~~~~~~l-~~ll~~cp~Le~L~L~~~~  201 (431)
                      +|++|.|.. .++.  + ...+.+|++|+.|.+.+..
T Consensus       102 ~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n~  135 (329)
T 3sb4_A          102 TLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKKT  135 (329)
T ss_dssp             TCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCSS
T ss_pred             CCcEEECCc-cccc--hhHHHhhcCcccceEEcCCCC
Confidence            999999976 3321  1 1235789999999997653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.11  E-value=0.0015  Score=57.11  Aligned_cols=59  Identities=8%  Similarity=0.046  Sum_probs=31.8

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      +.++.|.|.+..++.-.-...+..++.|+.|.|.++. ++.+.-  -..+++|+.|.+.++.
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc
Confidence            4567777777655432112235667777777777764 222211  1233556666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.07  E-value=0.0027  Score=63.82  Aligned_cols=178  Identities=9%  Similarity=-0.002  Sum_probs=104.1

Q ss_pred             HhhcCceEEEEEcCCCCCCCccccccccccccCCCCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCC
Q 014064          124 AIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDL  203 (431)
Q Consensus       124 ~~~~~v~eL~l~~~~~~~~~~~~lp~~~~~~l~lp~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~  203 (431)
                      +...+++.|++....-.     .+          |..+  +++|++|.|.+..++.  +.   ..+++|+.|.|.++.. 
T Consensus        56 C~~~~L~~L~Ls~n~L~-----~l----------p~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l-  112 (571)
T 3cvr_A           56 CLINQFSELQLNRLNLS-----SL----------PDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNRL-  112 (571)
T ss_dssp             HHHTTCSEEECCSSCCS-----CC----------CSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCC-
T ss_pred             cccCCccEEEeCCCCCC-----cc----------CHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCC-
Confidence            33457888887654321     13          3322  4899999999988763  32   5589999999998853 


Q ss_pred             ceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCc
Q 014064          204 LSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL  283 (431)
Q Consensus       204 ~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l  283 (431)
                      +.+....  .+|+.|.++++. +..+.-..++|+.|+++++.+...-..+++|+.+.+..+.... +.   . +.  ++|
T Consensus       113 ~~ip~l~--~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp---~-l~--~~L  182 (571)
T 3cvr_A          113 STLPELP--ASLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LP---E-LP--ESL  182 (571)
T ss_dssp             SCCCCCC--TTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---C-CC--TTC
T ss_pred             CCcchhh--cCCCEEECCCCc-CCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cc---h-hh--CCC
Confidence            3222211  389999999876 3333225678999998887553222256678888777544331 11   1 11  688


Q ss_pred             eEEEeeeceeeecccccccCCCc-------cEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          284 KTLELDGCNEVFAQFSQREFPKL-------MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       284 ~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      +.|.++.+. +.  .+|....+|       +.|.|+.+.-  .   .+..-+..+++|+.|++...
T Consensus       183 ~~L~Ls~N~-L~--~lp~~~~~L~~~~~~L~~L~Ls~N~l--~---~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          183 EALDVSTNL-LE--SLPAVPVRNHHSEETEIFFRCRENRI--T---HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             CEEECCSSC-CS--SCCCCC--------CCEEEECCSSCC--C---CCCGGGGGSCTTEEEECCSS
T ss_pred             CEEECcCCC-CC--chhhHHHhhhcccccceEEecCCCcc--e---ecCHHHhcCCCCCEEEeeCC
Confidence            888887776 33  233312244       5555543211  1   12233334778888877554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.01  E-value=0.00044  Score=59.39  Aligned_cols=149  Identities=16%  Similarity=0.125  Sum_probs=73.3

Q ss_pred             CCCCEEEEeeEEEcch-----hHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEE
Q 014064          165 KSLRSLTLCAVNVTGE-----VVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  239 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~-----~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L  239 (431)
                      ++++.+.+..+.+.+.     .+...+..++.|+.|.+.++. ++.+.....+++|+.|.+.++. +..+.         
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l~---------   86 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIE---------   86 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSCS---------
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-ccccc---------
Confidence            4555555555554432     244467889999999998874 2222211234677777777664 22110         


Q ss_pred             EEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc---ccccCCCccEEEEEEeec
Q 014064          240 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAA  316 (431)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~  316 (431)
                              -.+..+++|+.+.+..+.... .    .-+..+++|+.|.++... +....   ....+++|++|.+..+.-
T Consensus        87 --------~~~~~~~~L~~L~L~~N~l~~-l----~~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           87 --------NLDAVADTLEELWISYNQIAS-L----SGIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             --------SHHHHHHHCSEEEEEEEECCC-H----HHHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             --------chhhcCCcCCEEECcCCcCCc-C----CccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence                    001122344444444332221 1    112345566777776655 32211   111256666666643211


Q ss_pred             Ccc--c----HHHHHHHHhhCCCcceEE
Q 014064          317 NQE--T----LLGLSFIMKACPFLEKLV  338 (431)
Q Consensus       317 ~~~--~----~~~l~~ll~~~p~L~~L~  338 (431)
                      ...  .    .......+..+|+|+.|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC
Confidence            000  0    112345678899999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=95.95  E-value=0.016  Score=58.66  Aligned_cols=102  Identities=17%  Similarity=0.145  Sum_probs=67.0

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEE---E-eC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~---i-~a  233 (431)
                      .+.++++|++|.|+++.++.-. ...+.++++|+.|.|.++. ++.+..  -..+++|++|.+.++. +..+.   + ..
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L  147 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL  147 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred             HHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcC
Confidence            5678899999999988664310 1235778999999999885 333321  2356889999998875 33322   2 24


Q ss_pred             CceeEEEEeceeee-----eecCCCCCceeEEEEee
Q 014064          234 PNLLSFKYIGQDIN-----LHVGSLPQLVDVVFHVT  264 (431)
Q Consensus       234 p~L~~L~~~~~~~~-----~~~~~~~~L~~l~i~~~  264 (431)
                      ++|++|++.+..+.     ..++.+++|+.+.+..+
T Consensus       148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             cccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            77888888766432     23455777887777644

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.70  E-value=0.0042  Score=58.71  Aligned_cols=122  Identities=14%  Similarity=0.119  Sum_probs=54.6

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHh-cCCccceeeeccCCCCceee--eecCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIH-NCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL  237 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~  237 (431)
                      ++++.|.|++..+++-.- ..+. ++++|+.|.|.++.. +.+.  .-..+++|+.|.++++. +..+.-    ..++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            345556655554432111 1122 555666666655532 2111  01133555555555544 333321    125566


Q ss_pred             EEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHHhhh---ccCCCceEEEeeece
Q 014064          238 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIV---SYLPQLKTLELDGCN  292 (431)
Q Consensus       238 ~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~---~~~~~l~~L~l~~~~  292 (431)
                      .|.+.+..+.    ..+.++++|+.+.+..+.....-.   .++   ..+++|+.|+++...
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV---ELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG---GGTC----CTTCCEEECCSSC
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH---HHhcCcccCCcCCEEECCCCC
Confidence            6666555332    124456666666665433221000   112   456677777776655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.48  E-value=0.015  Score=54.45  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=49.8

Q ss_pred             CCCCEEEEeeEEEcchhHH-HHHhcCCccceeeeccCCCCceeeee--cCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064          165 KSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI----SAPNLL  237 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~i----~ap~L~  237 (431)
                      +++++|.|.+..++.  +. ..++++++|+.|.|.++...+.+...  ..+++++++.+..+..+..+.-    ..++|+
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            678888888876642  11 23567888888888887654443211  2345666666665555555531    247888


Q ss_pred             EEEEeceee
Q 014064          238 SFKYIGQDI  246 (431)
Q Consensus       238 ~L~~~~~~~  246 (431)
                      +|.+.+..+
T Consensus       108 ~L~l~~n~l  116 (350)
T 4ay9_X          108 YLLISNTGI  116 (350)
T ss_dssp             EEEEEEECC
T ss_pred             ccccccccc
Confidence            888877644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.16  E-value=0.0041  Score=62.58  Aligned_cols=102  Identities=19%  Similarity=0.254  Sum_probs=54.9

Q ss_pred             CCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCceeEEEEece
Q 014064          166 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ  244 (431)
Q Consensus       166 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~  244 (431)
                      .|+.|.|++..+++  +.. +..+++|+.|.|.++.-. .+ .....+++|+.|.++++. +..+               
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~l---------------  501 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENV---------------  501 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCC---------------
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCC---------------
Confidence            57888888776654  333 677788888888877432 21 111234666666666554 2211               


Q ss_pred             eeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          245 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       245 ~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                        + .++.+++|+.+.+..+...+..  ....+..+++|+.|.+++..
T Consensus       502 --p-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          502 --D-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             --G-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSG
T ss_pred             --c-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEEEecCCc
Confidence              1 2344555555555533222110  01334567777777776665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.09  E-value=0.012  Score=50.03  Aligned_cols=79  Identities=14%  Similarity=0.056  Sum_probs=43.5

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEE----eCCceeEE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLSF  239 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~L  239 (431)
                      ++|++|.|.+..++.-.-..++...+.|+.|.|.++...... ..-..+++|+.|.++++. +..+.-    ..++|++|
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence            478888888877654322224567888888888877432110 111234667777776654 333221    12445555


Q ss_pred             EEece
Q 014064          240 KYIGQ  244 (431)
Q Consensus       240 ~~~~~  244 (431)
                      ++.+.
T Consensus       108 ~L~~N  112 (192)
T 1w8a_A          108 NLYDN  112 (192)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            55444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.04  E-value=0.0045  Score=52.44  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=13.9

Q ss_pred             hHHHHHhcCCccceeeeccC
Q 014064          181 VVEFFIHNCPLLENLRITQS  200 (431)
Q Consensus       181 ~l~~ll~~cp~Le~L~L~~~  200 (431)
                      .+..++..++.|++|.|.+|
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n   46 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNI   46 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTC
T ss_pred             HHHHHHhcCCCCCEEEecCC
Confidence            45666677777777777766

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.00  E-value=0.0078  Score=52.44  Aligned_cols=100  Identities=14%  Similarity=0.121  Sum_probs=58.6

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~a  233 (431)
                      .+.++++|+.|.|.+..++.- ....+.++++|+.|.|.++.. +.+.-  -..+++|+.|.+.++. +..+.-    ..
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l  127 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDL  127 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCC
Confidence            456789999999998876532 122367789999999988753 22211  1234778888887765 332211    13


Q ss_pred             CceeEEEEeceeeee----ecCCCCCceeEEEE
Q 014064          234 PNLLSFKYIGQDINL----HVGSLPQLVDVVFH  262 (431)
Q Consensus       234 p~L~~L~~~~~~~~~----~~~~~~~L~~l~i~  262 (431)
                      ++|+.|++.+..+..    .+..+++|+.+.+.
T Consensus       128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B          128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            566666666553321    13334455555444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=94.85  E-value=0.0077  Score=52.84  Aligned_cols=64  Identities=16%  Similarity=0.052  Sum_probs=44.3

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      ..+.++++|++|.|.+..+..- -...+.++++|+.|.|.++. ++.+.-  -..+++|+.|.+.++.
T Consensus        58 ~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           58 GVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc
Confidence            3567889999999999877432 12346789999999999884 332211  1245788888887765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.70  E-value=0.0024  Score=60.71  Aligned_cols=37  Identities=8%  Similarity=0.117  Sum_probs=23.8

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      ++|++|+|+++.+++..+..+...+++|+.|+|.+|.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~  137 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS  137 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC
Confidence            5666777766666665555555556666777776663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=94.53  E-value=0.011  Score=51.56  Aligned_cols=64  Identities=14%  Similarity=0.052  Sum_probs=42.1

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~  224 (431)
                      .+.++++|++|.|.+..+++-. ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++.
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR  116 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC
T ss_pred             hhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc
Confidence            3568899999999988765321 123678899999999988532211 111234677777777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.81  E-value=0.039  Score=55.40  Aligned_cols=151  Identities=14%  Similarity=0.117  Sum_probs=84.7

Q ss_pred             CCCCCCCCCEEE-EeeEEEc--------chhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE
Q 014064          160 GLSGIKSLRSLT-LCAVNVT--------GEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE  230 (431)
Q Consensus       160 ~~~~~~~L~~L~-L~~~~~~--------~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~  230 (431)
                      .+.++++|+.|. +....+.        +..+..+-  ...|+.|.|.++.- +.+.-...+++|+.|.++++. +..+ 
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~-l~~l-  478 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNR-LRAL-  478 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSC-CCCC-
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCCCC-CCCcCccccccCcEeecCccc-cccc-
Confidence            345678888887 4433221        11122221  23689999998843 222112334667777776654 2211 


Q ss_pred             EeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccccc---CCCcc
Q 014064          231 ISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM  307 (431)
Q Consensus       231 i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~L~  307 (431)
                                      +-.++.+++|+.+.+..+...+ +    .-+..+++|+.|.++... +.....|..   +++|+
T Consensus       479 ----------------p~~~~~l~~L~~L~Ls~N~l~~-l----p~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          479 ----------------PPALAALRCLEVLQASDNALEN-V----DGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             ----------------CGGGGGCTTCCEEECCSSCCCC-C----GGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred             ----------------chhhhcCCCCCEEECCCCCCCC-C----cccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCC
Confidence                            1234566777777766443332 1    235788999999998876 433221333   67888


Q ss_pred             EEEEEEeecCcccHHHHHHHHhhCCCcceEE
Q 014064          308 NLNISFTAANQETLLGLSFIMKACPFLEKLV  338 (431)
Q Consensus       308 ~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~  338 (431)
                      .|.|+.+.-. ........++..+|+|+.|.
T Consensus       537 ~L~L~~N~l~-~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          537 LLNLQGNSLC-QEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             EEECTTSGGG-GSSSCTTHHHHHCTTCSEEE
T ss_pred             EEEecCCcCC-CCccHHHHHHHHCcccCccC
Confidence            8887543211 11112446778899999985

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=93.77  E-value=0.025  Score=48.10  Aligned_cols=106  Identities=15%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEEeCCceeEEEE
Q 014064          164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY  241 (431)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~  241 (431)
                      +++|++|.|.+..++.  +...+.++++|+.|.|.++.. +.+.-  -..+++|+.|.++++. +..+.-          
T Consensus        30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~----------   95 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR-LRCIPP----------   95 (193)
T ss_dssp             CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCBCCT----------
T ss_pred             CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCCEEECCCCc-cCEeCH----------
Confidence            3689999999887753  224577889999999988753 22211  1234667777766654 222211          


Q ss_pred             eceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          242 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       242 ~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                            ..+.++++|+.+.+..+......   ...+..+++|+.|.+.+.+
T Consensus        96 ------~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           96 ------RTFDGLKSLRLLSLHGNDISVVP---EGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ------TTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSSC
T ss_pred             ------HHhCCCCCCCEEECCCCCCCeeC---hhhhhcCccccEEEeCCCC
Confidence                  11334455555554433221100   0334567778888877665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.74  E-value=0.042  Score=46.33  Aligned_cols=122  Identities=19%  Similarity=0.192  Sum_probs=73.8

Q ss_pred             HHhhhccCCCceEEEeeec-eeeeccc---cc---ccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccc
Q 014064          273 IGSIVSYLPQLKTLELDGC-NEVFAQF---SQ---REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG  345 (431)
Q Consensus       273 ~~~~~~~~~~l~~L~l~~~-~~~~~~~---~~---~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~  345 (431)
                      +...+...++|+.|.++.+ . +....   +.   ...++|++|.|+.+.-.......+...+...++|++|++....  
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~--  104 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF--  104 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC--
T ss_pred             HHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc--
Confidence            3467778888888888776 4 33211   11   1146788888765433333445577888899999999986532  


Q ss_pred             cccCCCCccc--c-cCccCCccEEEE--eeee-cCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064          346 RRIGKKRHQI--S-KHSHQHLKLVEL--QGFN-GREIDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       346 ~~~~~~~~~~--~-~~~~~~L~~v~i--~~~~-g~~~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                        .++.|...  . -....+|+.+.+  .+-. |.+....+++ .+++.+.|+++.+....
T Consensus       105 --i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 --ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             --CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             --CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence              22222111  1 123467999999  4433 3333344544 55666889999987654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=93.30  E-value=0.55  Score=44.05  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             cCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccc---cc-ccCCCccEEEEEEeec---CcccHH
Q 014064          250 VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQ-REFPKLMNLNISFTAA---NQETLL  322 (431)
Q Consensus       250 ~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~---~~-~~~~~L~~L~l~~~~~---~~~~~~  322 (431)
                      +..+|+|+++.+..+.... +   .. + .+++|++|.+..+. +....   +. ..+++|++|+|.....   ......
T Consensus       168 l~~~P~L~~L~L~g~~~l~-l---~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLS-I---GK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCB-C---CS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             HhcCCCCcEEEEeCCCCce-e---cc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            3467888888887431110 0   01 1 36788888887665 33221   11 1378888888754211   111122


Q ss_pred             HHHHHHh--hCCCcceEEEEeeccccccCCCC--cccccCccCCccEEEEeeeecCchhHHHHHHHHhcCcccccEEEEe
Q 014064          323 GLSFIMK--ACPFLEKLVLQIWNNGRRIGKKR--HQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKP  398 (431)
Q Consensus       323 ~l~~ll~--~~p~L~~L~i~~~~~~~~~~~~~--~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~  398 (431)
                      .+..++.  .+|+|+.|.+....-.    +.+  .+-....+++|+.+.+..-.-++.....+-.-+++.+.|+++.+..
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~----~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~  316 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQ----NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY  316 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTH----HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCc----hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence            3333443  5788888888653211    000  0001224578888888542222211111111235678888888864


Q ss_pred             C
Q 014064          399 S  399 (431)
Q Consensus       399 ~  399 (431)
                      +
T Consensus       317 n  317 (362)
T 2ra8_A          317 N  317 (362)
T ss_dssp             B
T ss_pred             C
Confidence            4

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=92.88  E-value=0.031  Score=46.53  Aligned_cols=59  Identities=17%  Similarity=0.035  Sum_probs=35.5

Q ss_pred             CCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          164 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      +++|++|.|.+..+++- ....+..++.|+.|.+.++.- +.+.-  -..+++|+.|.+.++.
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCC
Confidence            37888888888766531 122356778888888887742 22211  1234666777666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=92.14  E-value=0.039  Score=46.84  Aligned_cols=65  Identities=15%  Similarity=0.045  Sum_probs=42.7

Q ss_pred             CCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          158 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       158 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      |..+.++++|++|.|.+..++.-. ...+.+++.|+.|.|.++.. +.+.-  -..+++|+.|.+.++.
T Consensus        47 p~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           47 PKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCcc-CEeCHHHhCCCCCCCEEECCCCC
Confidence            335568899999999988776421 12367889999999988753 22211  1234677777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=92.06  E-value=0.045  Score=45.50  Aligned_cols=64  Identities=14%  Similarity=0.062  Sum_probs=42.2

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee-eecCCCCcceEEeeccC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~-i~~~~~~L~~L~l~~c~  224 (431)
                      .+.++++|++|.|.+..++.- ....+..++.|+.|.+.++....... ....+++|+.|.+.++.
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           47 VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc
Confidence            346789999999998877532 12335789999999999875322111 11234677777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=91.99  E-value=0.025  Score=58.72  Aligned_cols=105  Identities=15%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEE---EeCC
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE---ISAP  234 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~---i~ap  234 (431)
                      ..+..+++|+.|.|.+..+..  +..-+..++.|+.|.|.++... .+ .-...+++|+.|.++++. +..+.   -..+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~  293 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF  293 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred             hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence            345677888888888876652  2222346788888888877532 21 111245778888888776 33331   1246


Q ss_pred             ceeEEEEeceee---eeecCCCCCceeEEEEeecCc
Q 014064          235 NLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMV  267 (431)
Q Consensus       235 ~L~~L~~~~~~~---~~~~~~~~~L~~l~i~~~~~~  267 (431)
                      +|++|.+.++.+   +..++.+++|+.+.+..+...
T Consensus       294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            788888877643   334677888888888766544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=91.98  E-value=0.072  Score=50.05  Aligned_cols=124  Identities=17%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eCCce
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNL  236 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L  236 (431)
                      ++++|++|.|.+..++.-. ...+..+++|+.|.|.++. ++.+.-  -..+++|+.|.+.++. +..+.-    ..++|
T Consensus        62 ~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL  138 (361)
T ss_dssp             CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred             cccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence            6788888888877654321 1235677888888888775 332211  1245778888887765 443321    24778


Q ss_pred             eEEEEeceeeee----ec---CCCCCceeEEEEeecCcchhhHHHhhhccCCC--ceEEEeeece
Q 014064          237 LSFKYIGQDINL----HV---GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQ--LKTLELDGCN  292 (431)
Q Consensus       237 ~~L~~~~~~~~~----~~---~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~--l~~L~l~~~~  292 (431)
                      +.|.+.+..+..    .+   ..+++|+.+.+..+.......   ..+..++.  ++.|.+.+.+
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL---TDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH---HHHHHSCHHHHTTEECCSSC
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH---HHhhhccHhhcceEEecCCC
Confidence            888887764421    12   457788888777543321100   12233443  3566665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=91.90  E-value=0.27  Score=46.90  Aligned_cols=14  Identities=14%  Similarity=0.313  Sum_probs=9.6

Q ss_pred             HhcCCccceeeecc
Q 014064          186 IHNCPLLENLRITQ  199 (431)
Q Consensus       186 l~~cp~Le~L~L~~  199 (431)
                      +.+|++|+.+.+.+
T Consensus       176 F~~c~~L~~l~l~~  189 (401)
T 4fdw_A          176 FYYCYNLKKADLSK  189 (401)
T ss_dssp             TTTCTTCCEEECTT
T ss_pred             hhCcccCCeeecCC
Confidence            45677777777754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=91.72  E-value=0.071  Score=45.06  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=45.1

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      +.++++|++|.|.+..+++- ....+.+.+.|+.|.|.++.. +.+..  -..+++|+.|.+.++.
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEECSSSSTTCTTCCEEECCSSC
T ss_pred             cccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc
Confidence            56889999999999887642 123367889999999998853 22211  2345889999998875

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=90.44  E-value=0.066  Score=55.54  Aligned_cols=105  Identities=15%  Similarity=0.021  Sum_probs=68.0

Q ss_pred             HHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE---EeCCceeEEEEeceee---eeecCCCCCc
Q 014064          183 EFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE---ISAPNLLSFKYIGQDI---NLHVGSLPQL  256 (431)
Q Consensus       183 ~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~~~~~---~~~~~~~~~L  256 (431)
                      ...+..++.|+.|.|.++.......-...+++|+.|.+.++. +..+.   -..++|+.|+++++.+   +-.++.+++|
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  295 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL  295 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred             hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence            445778899999999988643211111245889999999886 44332   1357899999988754   3346678889


Q ss_pred             eeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          257 VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       257 ~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      +.+.+..+...    .+..-+..+++|+.|.+++..
T Consensus       296 ~~L~L~~N~l~----~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          296 KYFYFFDNMVT----TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             SEEECCSSCCC----CCCSSTTSCTTCCCEECTTSC
T ss_pred             CEEECCCCCCC----ccChhhhcCCCccEEeCCCCc
Confidence            98888754332    111235778899999997765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=89.73  E-value=0.11  Score=43.19  Aligned_cols=58  Identities=16%  Similarity=0.063  Sum_probs=36.0

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      ++|++|.|.+..+.+- ....+.++++|+.|.|.++. ++.+.-  -..+++|+.|.+.++.
T Consensus        33 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc
Confidence            7888998888876542 12336678888888888774 322211  1234566666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=87.09  E-value=0.24  Score=40.77  Aligned_cols=78  Identities=14%  Similarity=0.072  Sum_probs=34.2

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEEE----eCCceeE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~  238 (431)
                      ++|++|.|.+..++.-. ...+.++++|+.|.|.++.. +.+.-  -..+++|+.|.+.+.. +..+.-    ..++|+.
T Consensus        30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence            55555555555443210 11234455555555555431 11110  1123455555555443 222211    1356666


Q ss_pred             EEEecee
Q 014064          239 FKYIGQD  245 (431)
Q Consensus       239 L~~~~~~  245 (431)
                      |.+.+..
T Consensus       107 L~L~~N~  113 (170)
T 3g39_A          107 IWLLNNP  113 (170)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            6666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=86.61  E-value=0.24  Score=40.79  Aligned_cols=62  Identities=13%  Similarity=0.025  Sum_probs=30.6

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeecc
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFC  223 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c  223 (431)
                      .+.++++|++|.|.+..++.- -...+.+.++|+.|.|.++.- +.+.  .-..+++|+.|.+.+.
T Consensus        49 ~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           49 VFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             hhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc-CEeCHHHhcCCCCCCEEEeCCC
Confidence            345566666666666655421 112245566666666665532 1111  1123355666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=86.08  E-value=0.31  Score=40.31  Aligned_cols=64  Identities=11%  Similarity=0.011  Sum_probs=42.2

Q ss_pred             CCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          159 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      ..+.++++|+.|.|.+..++.- -...+..+++|+.|.|.++.- +.+.-  -..+++|+.|.+.+.+
T Consensus        51 ~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           51 GVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSC
T ss_pred             HHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc-ceeCHHHhccccCCCEEEeCCCC
Confidence            4567899999999999877642 122357889999999998753 22211  1234566666666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=83.16  E-value=0.39  Score=44.49  Aligned_cols=65  Identities=20%  Similarity=0.117  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCCCEEEEee-EEEcchhHHHHHhcCCccceeeeccCCCCceee--eecCCCCcceEEeeccC
Q 014064          157 SGCGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~--i~~~~~~L~~L~l~~c~  224 (431)
                      +|. +..+++|++|.|.+ ..++.- ....+.++++|+.|.|.++. +..+.  .-..+++|+.|.+++..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence            444 56667777777774 444321 11225667777777777764 33221  11234667777776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=82.68  E-value=0.36  Score=43.12  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=25.3

Q ss_pred             CCCCCCEEEEeeEEEcc-hhHHHHHhcCCccceeeeccCC
Q 014064          163 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      ++|+|++|.|++..+++ ..+..++..+|+|+.|.|.+..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            46777777777776654 2344556667777777776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=82.07  E-value=1.6  Score=40.08  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=21.0

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      .+++.+.+.+. +...++..+...|+.|+.|.|.++.
T Consensus       202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~  237 (329)
T 3sb4_A          202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN  237 (329)
T ss_dssp             GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC
T ss_pred             cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC
Confidence            34444545443 2233455555568888888888653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=80.34  E-value=0.61  Score=44.15  Aligned_cols=36  Identities=14%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCEEEEeeE--EEcchhHHHHHhcCCccceeeec
Q 014064          159 CGLSGIKSLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRIT  198 (431)
Q Consensus       159 ~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~  198 (431)
                      ..+.++++|+.+.|...  .+.+.    .+.+|+.|+.+.+.
T Consensus       156 ~aF~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~  193 (394)
T 4fs7_A          156 EAFATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLP  193 (394)
T ss_dssp             TTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCC
T ss_pred             hhhcccCCCcEEecCCccceeccc----cccCCCCceEEEcC
Confidence            34667888998888532  22222    35678888888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	431
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	7e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-04

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 22  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 81
           D  +  P +I + I + L  ++   +  +S  W  +   +TSL     +      P    
Sbjct: 4   DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFN 63

Query: 82  SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNI-TNWVN 122
           S  +    K  +L +       +   RL       I  NW N
Sbjct: 64  SLNLKLSQKYPKLSQ-------QDRLRLSFLENIFILKNWYN 98

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 22 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 57
          D+ S  P ++ ++++S L  K+  + +     W+ L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 57
          +   PD++L+ I S L L E  + S +  RW  L
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	431
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.94
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.81
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.63
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.62
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.24
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.98
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.93
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.87
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.27
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.19
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.85
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.8
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.22
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.22
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.05
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.96
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	95.39
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.22
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.57
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.03
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	93.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	92.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.91
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	91.89
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	90.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	89.83
d2ifga3	156	High affinity nerve growth factor receptor, N-term	89.64
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	85.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	81.58

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.3e-11  Score=72.90  Aligned_cols=35  Identities=34%  Similarity=0.585  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcc
Q 014064           24 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW   58 (431)
Q Consensus        24 is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw   58 (431)
                      ++.||+||+.+||+|||.+|.++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=9.8e-11  Score=105.89  Aligned_cols=81  Identities=14%  Similarity=0.129  Sum_probs=55.5

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCc-eeeeecCCCCcceEEeeccCCcceE-----EEeCCce
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SLKVVGSSIPLKCLDIQFCYSIKEI-----EISAPNL  236 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~l~i~~~~~~L~~L~l~~c~~l~~i-----~i~ap~L  236 (431)
                      ...+|++|.|+++.++++.+..+++.||+|++|.|.+|...+ .+.....+++|++|.+++|..+...     .-..|+|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            346899999998888888888889999999999999885321 1222234578888888888754321     1124566


Q ss_pred             eEEEEec
Q 014064          237 LSFKYIG  243 (431)
Q Consensus       237 ~~L~~~~  243 (431)
                      ++|++++
T Consensus       124 ~~L~ls~  130 (284)
T d2astb2         124 DELNLSW  130 (284)
T ss_dssp             CEEECCC
T ss_pred             ccccccc
Confidence            6665544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.5e-10  Score=103.15  Aligned_cols=167  Identities=19%  Similarity=0.276  Sum_probs=106.5

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee---eeecCCCCcceEEeeccCCcce------EEEe
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKE------IEIS  232 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l---~i~~~~~~L~~L~l~~c~~l~~------i~i~  232 (431)
                      .++++|++|.|.++.+++..+.. ++.||+|+.|++.+|.+++..   .+...+++|++|.+++|..+..      +.-.
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            46788999999988877665655 567889999999888776532   2233568899999988875432      1112


Q ss_pred             CCceeEEEEeceee--e-----eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeeccccc--ccC
Q 014064          233 APNLLSFKYIGQDI--N-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQ--REF  303 (431)
Q Consensus       233 ap~L~~L~~~~~~~--~-----~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~  303 (431)
                      +|+|+.|.+.|...  .     .....+|+|+++.+..+....  +.....+..+++|++|.++.|..+....+.  ..+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it--d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCC--chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            57888888876421  1     123457888888776433221  111234467888999998876544433222  226


Q ss_pred             CCccEEEEEEeecCcccHHHHHHHHhhCCCcc
Q 014064          304 PKLMNLNISFTAANQETLLGLSFIMKACPFLE  335 (431)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~  335 (431)
                      ++|++|++..  +  .....+..+.+.||+|+
T Consensus       225 ~~L~~L~l~~--~--~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         225 PTLKTLQVFG--I--VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TTCCEEECTT--S--SCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeeeC--C--CCHHHHHHHHHhCcccc
Confidence            7888887743  2  23334667778888876

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6e-09  Score=78.27  Aligned_cols=37  Identities=22%  Similarity=0.464  Sum_probs=35.7

Q ss_pred             CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064           21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~l   57 (431)
                      .|.|+.||+||+.+||+||+.+|+++++.|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999985

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=2.3e-09  Score=80.22  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             CCcCCCCCHHHHHHHHhcCChHHHHHHHHHhhhhhhcccc
Q 014064           21 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTF   60 (431)
Q Consensus        21 ~D~is~LPd~lL~~Ils~L~~~~~~r~s~vSrrWr~lw~~   60 (431)
                      .|.|+.||+||+.+||+||+.+|+++++.|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999999999999999876443

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.2e-07  Score=72.82  Aligned_cols=37  Identities=24%  Similarity=0.484  Sum_probs=34.5

Q ss_pred             CCcCCCCC----HHHHHHHHhcCChHHHHHHHHHhhhhhhc
Q 014064           21 EDWFSRFP----DDILIHIISGLTLKEAARTSVLSSRWKYL   57 (431)
Q Consensus        21 ~D~is~LP----d~lL~~Ils~L~~~~~~r~s~vSrrWr~l   57 (431)
                      .|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999865

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=1.6e-06  Score=74.68  Aligned_cols=165  Identities=15%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE-EeCCceeE
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLS  238 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~-i~ap~L~~  238 (431)
                      ++.++++|++|.|.+..+.+-.  . +..++.|+.|.+.++.. +.+.--..+++|+.+.+.+|....... ...+.+..
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  133 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV  133 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCE
T ss_pred             hHhcCCCCcEeecCCceeeccc--c-ccccccccccccccccc-cccccccccccccccccccccccccchhccccchhh
Confidence            4568899999999988776521  1 67889999999988753 333222345788888887765211111 12355555


Q ss_pred             EEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064          239 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  316 (431)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  316 (431)
                      +.+.+....  ..+..+++|+.+.+..+.....     .-+.++++|+.|.++++. +........+++|++|.|+.+. 
T Consensus       134 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-----~~l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N~-  206 (227)
T d1h6ua2         134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQ-  206 (227)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSC-
T ss_pred             hhchhhhhchhhhhccccccccccccccccccc-----hhhcccccceecccCCCc-cCCChhhcCCCCCCEEECcCCc-
Confidence            555443221  1234455566555543221111     113455666666665554 3221111225556655553321 


Q ss_pred             CcccHHHHHHHHhhCCCcceEEEE
Q 014064          317 NQETLLGLSFIMKACPFLEKLVLQ  340 (431)
Q Consensus       317 ~~~~~~~l~~ll~~~p~L~~L~i~  340 (431)
                       -.++.    -++++++|+.|+|.
T Consensus       207 -lt~i~----~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         207 -ISDVS----PLANTSNLFIVTLT  225 (227)
T ss_dssp             -CCBCG----GGTTCTTCCEEEEE
T ss_pred             -CCCCc----ccccCCCCCEEEee
Confidence             11111    14566666666653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.98  E-value=3.1e-06  Score=71.24  Aligned_cols=81  Identities=11%  Similarity=0.084  Sum_probs=49.8

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE-eCCceeE
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLS  238 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i-~ap~L~~  238 (431)
                      ++..|++|++|.|++..+++-.  . ++++|+|+.|.+.++.... +.....+++|+.|.+.++.......+ ..++|+.
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~  132 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIAD-ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR  132 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             ccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccc-ccccccccccccccccccccccccccchhhhhHH
Confidence            3457899999999988776532  1 6788999999998875432 22123457788888877652110001 1355555


Q ss_pred             EEEece
Q 014064          239 FKYIGQ  244 (431)
Q Consensus       239 L~~~~~  244 (431)
                      |.+++.
T Consensus       133 L~l~~n  138 (199)
T d2omxa2         133 LELSSN  138 (199)
T ss_dssp             EECCSS
T ss_pred             hhhhhh
Confidence            555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.93  E-value=4.8e-06  Score=70.68  Aligned_cols=147  Identities=21%  Similarity=0.220  Sum_probs=78.7

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEE
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  239 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L  239 (431)
                      ++..|++|++|.|++..+++-  .. ++.+++|+.|.+.++. ++.+.-...+++|+.|.+.++.. ..+.         
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~~-~~~~---------  128 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGI-SDIN---------  128 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCC-CCCG---------
T ss_pred             hHhhCCCCCEEeCCCccccCc--cc-cccCcccccccccccc-ccccccccccccccccccccccc-cccc---------
Confidence            456789999999998877652  22 4678999999998874 33332223457788888777652 1110         


Q ss_pred             EEeceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcc
Q 014064          240 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE  319 (431)
Q Consensus       240 ~~~~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  319 (431)
                               .+..++.++.+.+......+.     .....+++|+.+.+.... +....-...+++|++|.++.+.-  .
T Consensus       129 ---------~l~~l~~l~~l~~~~n~l~~~-----~~~~~l~~L~~l~l~~n~-l~~i~~l~~l~~L~~L~Ls~N~i--~  191 (210)
T d1h6ta2         129 ---------GLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHI--S  191 (210)
T ss_dssp             ---------GGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC--C
T ss_pred             ---------ccccccccccccccccccccc-----cccccccccccccccccc-ccccccccCCCCCCEEECCCCCC--C
Confidence                     112233333333332211110     223456666766666554 32211112256666666643211  1


Q ss_pred             cHHHHHHHHhhCCCcceEEEEe
Q 014064          320 TLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       320 ~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      +   +. -+.++++|+.|+|..
T Consensus       192 ~---l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 D---LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             B---CG-GGTTCTTCSEEEEEE
T ss_pred             C---Ch-hhcCCCCCCEEEccC
Confidence            1   11 256677888887754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.91  E-value=3.3e-06  Score=71.71  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEe
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  242 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~  242 (431)
                      .+.+|+.|.+.++.+++-  .. +..+++|++|.|.++. ++.+.-...+++|+.|.+.++. +..+             
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~-l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l-------------  105 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDL-------------  105 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCG-------------
T ss_pred             HhcCccEEECcCCCCCCc--hh-HhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-cccc-------------
Confidence            357888998888876542  11 5779999999999884 3333222345778888777664 2211             


Q ss_pred             ceeeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHH
Q 014064          243 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLL  322 (431)
Q Consensus       243 ~~~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  322 (431)
                          + .+..+++|+.+.+....... .    ..+..+++++.+.+.... +........+++|+.+.+..+.  -.+..
T Consensus       106 ----~-~l~~l~~L~~L~l~~~~~~~-~----~~l~~l~~l~~l~~~~n~-l~~~~~~~~l~~L~~l~l~~n~--l~~i~  172 (210)
T d1h6ta2         106 ----S-SLKDLKKLKSLSLEHNGISD-I----NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQ--ISDIV  172 (210)
T ss_dssp             ----G-GGTTCTTCCEEECTTSCCCC-C----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC--CCCCG
T ss_pred             ----c-cccccccccccccccccccc-c----cccccccccccccccccc-cccccccccccccccccccccc--ccccc
Confidence                0 13445666666655322211 1    334678889999987766 4333333347888888875431  12222


Q ss_pred             HHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEee
Q 014064          323 GLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQG  370 (431)
Q Consensus       323 ~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  370 (431)
                          -+.++|+|++|++....    ..   ..+.-..+++|+.+.+.+
T Consensus       173 ----~l~~l~~L~~L~Ls~N~----i~---~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 ----PLAGLTKLQNLYLSKNH----IS---DLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             ----GGTTCTTCCEEECCSSC----CC---BCGGGTTCTTCSEEEEEE
T ss_pred             ----cccCCCCCCEEECCCCC----CC---CChhhcCCCCCCEEEccC
Confidence                26789999999996531    11   112223357899888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.87  E-value=5.6e-06  Score=69.54  Aligned_cols=58  Identities=7%  Similarity=0.103  Sum_probs=41.2

Q ss_pred             CCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccC
Q 014064          163 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       163 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~  224 (431)
                      .+++|++|.+.+..+++  +.. ++.+++|+.|.+.++. ++.+.-...+++|+.|.+.++.
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~~-l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC
T ss_pred             HhcCCCEEECCCCCCCC--ccc-cccCCCcCcCcccccc-ccCcccccCCcccccccccccc
Confidence            45789999998887764  221 5779999999999984 3333223355788888887765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.64  E-value=6.5e-06  Score=75.44  Aligned_cols=228  Identities=15%  Similarity=0.106  Sum_probs=118.5

Q ss_pred             CCCCCCCEEEEeeEEEc---c---h---hHHHHHhcCCccceeeeccCCCCc----ee-eeecCCCCcceEEeeccCCcc
Q 014064          162 SGIKSLRSLTLCAVNVT---G---E---VVEFFIHNCPLLENLRITQSPDLL----SL-KVVGSSIPLKCLDIQFCYSIK  227 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~---~---~---~l~~ll~~cp~Le~L~L~~~~~~~----~l-~i~~~~~~L~~L~l~~c~~l~  227 (431)
                      ...++|+.|.+.++...   +   .   .+...+..|++|++|.|.+|..-.    .+ .....+++|++|.+.+|.. .
T Consensus        56 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~  134 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-G  134 (344)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-H
T ss_pred             HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccc-c
Confidence            45577777777765322   1   1   133445567777777777764211    01 1111346677777766641 1


Q ss_pred             eEE--EeCCceeEEEEeceeeeeecCCCCCceeEEEEeecCc-chhhHHHhhhccCCCceEEEeeeceeeecc-------
Q 014064          228 EIE--ISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMV-QKMHCIGSIVSYLPQLKTLELDGCNEVFAQ-------  297 (431)
Q Consensus       228 ~i~--i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-------  297 (431)
                      ...  .-+..+..+.     ........+.|+.+.+...... .....+...+..++.++.|.+..+. +...       
T Consensus       135 ~~~~~~l~~~l~~~~-----~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~  208 (344)
T d2ca6a1         135 PQAGAKIARALQELA-----VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLL  208 (344)
T ss_dssp             HHHHHHHHHHHHHHH-----HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHH
T ss_pred             ccccccccccccccc-----cccccccCcccceeecccccccccccccccchhhhhhhhccccccccc-ccccccccchh
Confidence            000  0000000000     0001123445555555433222 1223344566778889999987765 3221       


Q ss_pred             cccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCccc-----ccCccCCccEEEEeeee
Q 014064          298 FSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI-----SKHSHQHLKLVELQGFN  372 (431)
Q Consensus       298 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~-----~~~~~~~L~~v~i~~~~  372 (431)
                      ......++|+.|+|..+.-.......+...+..+|+|++|.+....    ..+.|...     ..+....|+.+.+.+-.
T Consensus       209 ~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~----i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         209 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL----LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC----CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc----cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            1122367888888754322222344577888999999999985432    11111111     02345679999887644


Q ss_pred             cC-chhHHHHHHHHhcCcccccEEEEeCC
Q 014064          373 GR-EIDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       373 g~-~~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                      -+ +.-..+++.+-.+.+.|+++.+....
T Consensus       285 i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         285 IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            22 33344666655688999998875433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=7.6e-06  Score=72.10  Aligned_cols=189  Identities=19%  Similarity=0.118  Sum_probs=96.8

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEEeCCceeEEEEece
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ  244 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~  244 (431)
                      ++|++|+|.+..++.-. ...+.++++|++|.|.++. ++.+.....+++|+.|.++++. +..+.              
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~~~--------------   93 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLP--------------   93 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCC--------------
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-cccccccccccccccccccccc-ccccc--------------
Confidence            68999999988765311 1236789999999999984 5555444566788888887765 22111              


Q ss_pred             eeeeecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecc--cccccCCCccEEEEEEeecCcccHH
Q 014064          245 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLNISFTAANQETLL  322 (431)
Q Consensus       245 ~~~~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~  322 (431)
                         ..+.++++|+.+.+........   .......+.+++.|.+.... +...  .....+++|+.|.+..+.-  ... 
T Consensus        94 ---~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l--~~~-  163 (266)
T d1p9ag_          94 ---LLGQTLPALTVLDVSFNRLTSL---PLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL--TEL-  163 (266)
T ss_dssp             ---CCTTTCTTCCEEECCSSCCCCC---CSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC--SCC-
T ss_pred             ---ccccccccccccccccccccee---eccccccccccccccccccc-cceeccccccccccchhcccccccc--ccc-
Confidence               1122334444444332211100   00223455566666665443 2110  0111144555555533211  111 


Q ss_pred             HHHHHHhhCCCcceEEEEeeccccccCCCCcccc-cCccCCccEEEEee--eecCchhHHHHHHHHhcC
Q 014064          323 GLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELAFYVFENA  388 (431)
Q Consensus       323 ~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~~~ll~~a  388 (431)
                       ....+..+++|++|++....-.       .++. .....+|+.+.+.|  +..+.+-..+.+++-.+.
T Consensus       164 -~~~~~~~l~~L~~L~Ls~N~L~-------~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~  224 (266)
T d1p9ag_         164 -PAGLLNGLENLDTLLLQENSLY-------TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (266)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             -CccccccccccceeecccCCCc-------ccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHhcc
Confidence             1134566788888877543211       1111 23456788887776  444444455666554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.1e-05  Score=65.29  Aligned_cols=79  Identities=15%  Similarity=0.110  Sum_probs=49.9

Q ss_pred             CCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEEE----eCCcee
Q 014064          162 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL  237 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~i----~ap~L~  237 (431)
                      .+...|++|+|++..++.  +..+...+++|+.|.|.++. +..+.--..+++|+.|.+++|. +..+.-    ..|+|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            455778888888887654  23345678888888888874 3333322345778888887776 444421    245666


Q ss_pred             EEEEece
Q 014064          238 SFKYIGQ  244 (431)
Q Consensus       238 ~L~~~~~  244 (431)
                      .|.+.+.
T Consensus        91 ~L~L~~N   97 (162)
T d1a9na_          91 ELILTNN   97 (162)
T ss_dssp             EEECCSC
T ss_pred             cceeccc
Confidence            6666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.27  E-value=0.00016  Score=61.49  Aligned_cols=142  Identities=13%  Similarity=0.142  Sum_probs=95.7

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceE-EEeCCceeEE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEI-EISAPNLLSF  239 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i-~i~ap~L~~L  239 (431)
                      +..+++|+.|.+.++.+++  +.. +..++.|+.+.+.+|.......+ ...+.++.+.+..+...... ....++|+.|
T Consensus        81 l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L  156 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNISPLAGLTNLQYL  156 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECTTSCCCCCGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccc--ccc-ccccccccccccccccccccchh-ccccchhhhhchhhhhchhhhhccccccccc
Confidence            4688999999999887654  222 67899999999988865432222 23367788887766521111 1246789999


Q ss_pred             EEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEE
Q 014064          240 KYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNIS  312 (431)
Q Consensus       240 ~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  312 (431)
                      .+.+....  ..++++++|+.+.+..+...+ +    ..+.++++|+.|.++.+. +........+++|+.|.|+
T Consensus       157 ~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l----~~l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         157 SIGNAQVSDLTPLANLSKLTTLKADDNKISD-I----SPLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C----GGGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEE
T ss_pred             cccccccccchhhcccccceecccCCCccCC-C----hhhcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEee
Confidence            98876542  346788999999987543321 1    235788999999998886 5433222348889988885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.19  E-value=0.00014  Score=66.94  Aligned_cols=187  Identities=16%  Similarity=0.119  Sum_probs=116.7

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCcee
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL  237 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~  237 (431)
                      ....+++++.|.+.+..+++-.   -...++.|+.|.+.++. ++.+.....+++|+.|.+.++. +..+.  -..|+|+
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~  266 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLT  266 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCS
T ss_pred             ccccccccceeeccCCccCCCC---cccccCCCCEEECCCCC-CCCcchhhcccccchhccccCc-cCCCCcccccccCC
Confidence            4457899999999988765421   14678999999999885 3333222345889999988875 33221  1357899


Q ss_pred             EEEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEee
Q 014064          238 SFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTA  315 (431)
Q Consensus       238 ~L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  315 (431)
                      .|.+++....  ..+..++.++.+.+......+.     .-+..+++++.|.++... +........+++|++|.+..+.
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~-----~~~~~~~~l~~L~ls~n~-l~~l~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-----GGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSC
T ss_pred             EeeccCcccCCCCccccccccccccccccccccc-----cccchhcccCeEECCCCC-CCCCcccccCCCCCEEECCCCC
Confidence            9998776442  1345566676666553332211     335778899999998776 4332222348899999886532


Q ss_pred             cCcccHHHHHHHHhhCCCcceEEEEeeccccccCCCCcccccCccCCccEEEEee
Q 014064          316 ANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQG  370 (431)
Q Consensus       316 ~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  370 (431)
                      -  .+.   . -+..+|+|++|++....-    .  + .++-..+++|+.+.+.+
T Consensus       341 l--~~l---~-~l~~l~~L~~L~l~~N~l----~--~-l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         341 V--SDV---S-SLANLTNINWLSAGHNQI----S--D-LTPLANLTRITQLGLND  382 (384)
T ss_dssp             C--CCC---G-GGGGCTTCCEEECCSSCC----C--B-CGGGTTCTTCSEEECCC
T ss_pred             C--CCC---h-hHcCCCCCCEEECCCCcC----C--C-ChhhccCCCCCEeeCCC
Confidence            1  122   1 367899999999965421    1  1 11122357888887753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.85  E-value=6.6e-05  Score=68.42  Aligned_cols=40  Identities=15%  Similarity=0.140  Sum_probs=31.1

Q ss_pred             CCCCCCCEEEEeeEEEcchh---HHHHHhcCCccceeeeccCC
Q 014064          162 SGIKSLRSLTLCAVNVTGEV---VEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       162 ~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~  201 (431)
                      ..+++|++|.|.++.+++..   +...+..++.|+.|.+.+|.
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            35688999999988887653   55566788999999998875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.80  E-value=0.00044  Score=63.39  Aligned_cols=164  Identities=16%  Similarity=0.130  Sum_probs=105.3

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE--EeCCceeE
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  238 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~~  238 (431)
                      ...+++|++|.+.+..+++-  . .+..++.|+.|.+.++.. ..+.-...+++|+.|.+.++. +..+.  ...+.++.
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~  289 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTN  289 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred             ccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCcc-CCCCcccccccCCEeeccCcc-cCCCCcccccccccc
Confidence            35678999999998877653  2 267899999999998853 222223345889999988765 22221  12356667


Q ss_pred             EEEeceeee--eecCCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeec
Q 014064          239 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  316 (431)
Q Consensus       239 L~~~~~~~~--~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  316 (431)
                      +...+....  ..+..+++++.+.+..+...+.     .-+..+++|+.|.++++. +........+++|++|.++.+. 
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-----~~l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N~-  362 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYLTLYFNNISDI-----SPVSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHNQ-  362 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-
T ss_pred             ccccccccccccccchhcccCeEECCCCCCCCC-----cccccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCCc-
Confidence            766654332  1245677888887775443321     225788999999998886 4432212237788888885431 


Q ss_pred             CcccHHHHHHHHhhCCCcceEEEEe
Q 014064          317 NQETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       317 ~~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                       -.+..   . +.++|+|++|+|..
T Consensus       363 -l~~l~---~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         363 -ISDLT---P-LANLTRITQLGLND  382 (384)
T ss_dssp             -CCBCG---G-GTTCTTCSEEECCC
T ss_pred             -CCCCh---h-hccCCCCCEeeCCC
Confidence             12222   2 67899999999853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0014  Score=52.37  Aligned_cols=128  Identities=13%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             hcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEeec
Q 014064          187 HNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP  265 (431)
Q Consensus       187 ~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~~  265 (431)
                      ..+..|++|+|.++.- +.+ .+...+++|+.|.++++. +..+.-                  +..+++|+.+.+..+.
T Consensus        15 ~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~------------------~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          15 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLDG------------------FPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEECC------------------CCCCSSCCEEECCSSC
T ss_pred             cCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCC-CCccCC------------------cccCcchhhhhccccc
Confidence            4577888899988752 222 222345677888877764 443320                  2234444444444322


Q ss_pred             CcchhhHHHhhhccCCCceEEEeeeceeeecc-c--ccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEE
Q 014064          266 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ-F--SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVL  339 (431)
Q Consensus       266 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i  339 (431)
                      ......   .++..+++++.|.+.... +... .  ....+++|++|.+..+.-.... ..-...+..+|+|+.|+-
T Consensus        75 i~~l~~---~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~-~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          75 ICRIGE---GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKK-HYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEECS---CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGST-THHHHHHHHCTTCSEETT
T ss_pred             ccCCCc---cccccccccccceecccc-ccccccccccccccccchhhcCCCcccccc-chHHHHHHHCCCcCeeCC
Confidence            211000   233456677777776655 3221 1  1122566666666443211111 112346677888887753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00041  Score=61.05  Aligned_cols=15  Identities=20%  Similarity=0.058  Sum_probs=8.4

Q ss_pred             HHhhCCCcceEEEEe
Q 014064          327 IMKACPFLEKLVLQI  341 (431)
Q Consensus       327 ll~~~p~L~~L~i~~  341 (431)
                      .+..+++|++|++..
T Consensus       196 ~f~~l~~L~~L~l~~  210 (284)
T d1ozna_         196 AFRDLGRLMTLYLFA  210 (284)
T ss_dssp             TTTTCTTCCEEECCS
T ss_pred             Hhhhhhhcccccccc
Confidence            345566666666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0025  Score=55.19  Aligned_cols=127  Identities=20%  Similarity=0.163  Sum_probs=66.9

Q ss_pred             CCCCCceeEEEEeecCcchhhHHHhhhccCCCceEEEeeeceeeecc--cccccCCCccEEEEEEeecCcccHHHHHHHH
Q 014064          251 GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLNISFTAANQETLLGLSFIM  328 (431)
Q Consensus       251 ~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll  328 (431)
                      +.+++|+.+.+..+.....    ...+..+++|+.|.++... ....  .......+++.|.+....-  ....  ...+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n~l--~~l~--~~~~  144 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQSL----PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNEL--KTLP--PGLL  144 (266)
T ss_dssp             SCCTTCCEEECCSSCCSSC----CCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCC--CCCC--TTTT
T ss_pred             ccccccccccccccccccc----ccccccccccccccccccc-cceeecccccccccccccccccccc--ceec--cccc
Confidence            3466666666654332211    1445778899999998776 2111  1111256777777643211  1111  2455


Q ss_pred             hhCCCcceEEEEeeccccccCCCCccccc-CccCCccEEEEeeee--cCchhHHHHHHHHhcCcccccEEEEeC
Q 014064          329 KACPFLEKLVLQIWNNGRRIGKKRHQISK-HSHQHLKLVELQGFN--GREIDFELAFYVFENATMLEKMIIKPS  399 (431)
Q Consensus       329 ~~~p~L~~L~i~~~~~~~~~~~~~~~~~~-~~~~~L~~v~i~~~~--g~~~e~~l~~~ll~~a~~Le~m~i~~~  399 (431)
                      ...++|+.|.+....-.      +..+.. ....+|+.+.+.+=.  .-...       +...+.|+.+.+...
T Consensus       145 ~~l~~l~~l~l~~N~l~------~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~-------~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         145 TPTPKLEKLSLANNNLT------ELPAGLLNGLENLDTLLLQENSLYTIPKG-------FFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTCTTCCEEECTTSCCS------CCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCCCSEEECCSC
T ss_pred             cccccchhccccccccc------ccCccccccccccceeecccCCCcccChh-------HCCCCCCCEEEecCC
Confidence            67899999988553211      010111 235788888887622  11111       114578888877643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.46  E-value=0.0013  Score=58.36  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=26.9

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  201 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  201 (431)
                      .+.++++|++|.+.++.+..-. ...+.+++.|+.|.+.++.
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~-~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC
T ss_pred             Hhhccccccccccccccccccc-hhhhhCCCccCEecccCCc
Confidence            4567788888888877654311 1235677888888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0014  Score=57.41  Aligned_cols=171  Identities=17%  Similarity=0.149  Sum_probs=86.0

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeee--cCCCCcceEEeeccCCcceEE----EeC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE----ISA  233 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~----i~a  233 (431)
                      .+.++++|++|.+++..+..-. ......++.++.+.......+..+.-.  ..+++|+.|.+.++. +..+.    -..
T Consensus        51 ~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~  128 (284)
T d1ozna_          51 SFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGL  128 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTC
T ss_pred             Hhhccccccccccccccccccc-cccccccccccccccccccccccccchhhcccccCCEEecCCcc-cccccccccchh
Confidence            3556666777776655443211 112345566666655544433332111  234667777776654 22221    123


Q ss_pred             CceeEEEEeceeee----eecCCCCCceeEEEEeecCcchhhHHH-hhhccCCCceEEEeeeceeeeccccccc---CCC
Q 014064          234 PNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFSQRE---FPK  305 (431)
Q Consensus       234 p~L~~L~~~~~~~~----~~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~---~~~  305 (431)
                      ++|+.+.+.+..+.    -.+...++|+.+.+..+...    .+. ..+.++++|+.+.+.... +. ...+..   +++
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~----~l~~~~f~~l~~L~~l~l~~N~-l~-~i~~~~f~~l~~  202 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS----SVPERAFRGLHSLDRLLLHQNR-VA-HVHPHAFRDLGR  202 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSC-CC-EECTTTTTTCTT
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCccc----ccchhhhccccccchhhhhhcc-cc-ccChhHhhhhhh
Confidence            56777777665432    12345666776665533221    111 344667777777776554 22 111222   456


Q ss_pred             ccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          306 LMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       306 L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      |++|.++.+.-.  ..  ....+..+++|+.|.+...
T Consensus       203 L~~L~l~~N~i~--~~--~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         203 LMTLYLFANNLS--AL--PTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCEEECCSSCCS--CC--CHHHHTTCTTCCEEECCSS
T ss_pred             cccccccccccc--cc--cccccccccccCEEEecCC
Confidence            666665433211  11  1245667777877777543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.22  E-value=3.4e-05  Score=64.51  Aligned_cols=97  Identities=19%  Similarity=0.238  Sum_probs=55.3

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEE--EeCCcee
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL  237 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~--i~ap~L~  237 (431)
                      +..+++|++|.|++..+++  +.. +.++++|+.|.|.+|. ++.+ .+....++|+.|.+.++. +..+.  ...++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHHHSS
T ss_pred             HhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-ccccccccccccccccccccccc-cccccccccccccc
Confidence            4567899999999998875  221 5678899999998774 2222 111122457777776654 33221  1235566


Q ss_pred             EEEEeceeee-e----ecCCCCCceeEEEE
Q 014064          238 SFKYIGQDIN-L----HVGSLPQLVDVVFH  262 (431)
Q Consensus       238 ~L~~~~~~~~-~----~~~~~~~L~~l~i~  262 (431)
                      .|++++..+. +    .+..+++|+.+.+.
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~  148 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred             ccccccchhccccccccccCCCccceeecC
Confidence            6666554331 1    23445555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0094  Score=50.37  Aligned_cols=64  Identities=22%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             CCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          161 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       161 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      +.++++|++|.|.+..+...--...+.+++.+++|.+..+..+.....  -..+++|+.|.+.++.
T Consensus        49 f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          49 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             hhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh
Confidence            456777777777766332210011144566777776666554433221  1234667777776653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0014  Score=61.21  Aligned_cols=37  Identities=14%  Similarity=0.194  Sum_probs=19.9

Q ss_pred             CCCCCEEEEeeEEEcchhH---HHHHhcCCccceeeeccC
Q 014064          164 IKSLRSLTLCAVNVTGEVV---EFFIHNCPLLENLRITQS  200 (431)
Q Consensus       164 ~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~~  200 (431)
                      +++||+|.|.+|.+++.++   ...+..||+|++|+|.++
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            4556666666665554332   333455666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0083  Score=50.73  Aligned_cols=170  Identities=16%  Similarity=0.111  Sum_probs=94.0

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccCCcceEE----EeCCceeE
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE----ISAPNLLS  238 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~~l~~i~----i~ap~L~~  238 (431)
                      +++++|.|.+..++.-. ...+.++++|+.|.+.++.....+..  -..+++++.+.+..+..+..+.    -..|+|+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            68999999988665311 11367899999999998865544322  1245788999888776555543    34689999


Q ss_pred             EEEeceeee-e-ecCCCCCceeEEEEeecCcchhhHHH-hhhccC-CCceEEEeeeceeeeccccccc-CCCccEEEEEE
Q 014064          239 FKYIGQDIN-L-HVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYL-PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF  313 (431)
Q Consensus       239 L~~~~~~~~-~-~~~~~~~L~~l~i~~~~~~~~~~~~~-~~~~~~-~~l~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~  313 (431)
                      +.+.+.... . ....+..+..+......... ...+. ..+.++ ..++.|.+.... +.  .++.. |....-+++..
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n~-l~--~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNG-IQ--EIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSC-CC--EECTTTTTTCCEEEEEC
T ss_pred             cccchhhhcccccccccccccccccccccccc-cccccccccccccccceeeeccccc-cc--ccccccccchhhhcccc
Confidence            999886442 1 22334455555544332211 00000 112222 366777775544 22  22222 33333333322


Q ss_pred             eecCcccHHHH-HHHHhhCCCcceEEEEe
Q 014064          314 TAANQETLLGL-SFIMKACPFLEKLVLQI  341 (431)
Q Consensus       314 ~~~~~~~~~~l-~~ll~~~p~L~~L~i~~  341 (431)
                      ....  ....+ ...+.++|+|+.|+|..
T Consensus       184 l~~n--~l~~l~~~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         184 SDNN--NLEELPNDVFHGASGPVILDISR  210 (242)
T ss_dssp             TTCT--TCCCCCTTTTTTSCCCSEEECTT
T ss_pred             cccc--ccccccHHHhcCCCCCCEEECCC
Confidence            1111  11111 23577899999999944

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.96  E-value=0.00021  Score=59.45  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=36.0

Q ss_pred             HHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeeccCCcceEE---EeCCceeEEEEecee
Q 014064          183 EFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE---ISAPNLLSFKYIGQD  245 (431)
Q Consensus       183 ~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c~~l~~i~---i~ap~L~~L~~~~~~  245 (431)
                      ..-++..++|+.|.|.++. ++.+.--..+++|+.|.++++. +..+.   -..|+|+.|.+.+..
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE
T ss_pred             hhHHhcccccceeECcccC-CCCcccccCCccccChhhcccc-ccccccccccccccccccccccc
Confidence            3447788999999998774 3333212244788888888775 32221   112456666655543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.0007  Score=51.50  Aligned_cols=61  Identities=16%  Similarity=0.080  Sum_probs=36.4

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeeeecCCCCcceEEeecc
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC  223 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~~~~~~L~~L~l~~c  223 (431)
                      .+.++++|++|.+++..+++  +..-++.+++|+.|.+.++. ++.+.-...+++|++|.+.++
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSS
T ss_pred             ccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc-ccccCccccccccCeEECCCC
Confidence            35677888888888887654  22236678888888888764 222211123345555555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.58  E-value=0.0017  Score=57.77  Aligned_cols=61  Identities=11%  Similarity=0.015  Sum_probs=30.3

Q ss_pred             hhccCCCceEEEeeeceeeecccccc--cCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEee
Q 014064          276 IVSYLPQLKTLELDGCNEVFAQFSQR--EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       276 ~~~~~~~l~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      ....+++++.+.+.... +.. ..+.  .+++|+.|.|+.+.-  ..  .+..-+.++|+|++|+++..
T Consensus       216 ~~~~~~~l~~l~~~~~~-l~~-~~~~~~~~~~L~~L~Ls~N~l--~g--~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         216 LFGSDKNTQKIHLAKNS-LAF-DLGKVGLSKNLNGLDLRNNRI--YG--TLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             GCCTTSCCSEEECCSSE-ECC-BGGGCCCCTTCCEEECCSSCC--EE--CCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccc-ccc-cccccccccccccccCccCee--cc--cCChHHhCCCCCCEEECcCC
Confidence            33455666776665554 221 1111  145666666643211  10  12234566777777777543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.39  E-value=0.005  Score=50.35  Aligned_cols=60  Identities=10%  Similarity=-0.023  Sum_probs=38.4

Q ss_pred             CCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccC
Q 014064          165 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY  224 (431)
Q Consensus       165 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~  224 (431)
                      +++++|.|++..++...-...+.+.++|+.|.|.++...... ......++|+.|.+++..
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc
Confidence            789999999888754322333677889999999877532211 111234677777776654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.22  E-value=0.0014  Score=58.26  Aligned_cols=88  Identities=20%  Similarity=0.242  Sum_probs=52.5

Q ss_pred             CCCCCCCCCCCCEEEEeeE-EEcchhHHHHHhcCCccceeeeccCCCCcee-eeecCCCCcceEEeeccCCcceEE---E
Q 014064          157 SGCGLSGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE---I  231 (431)
Q Consensus       157 lp~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l-~i~~~~~~L~~L~l~~c~~l~~i~---i  231 (431)
                      +|..+.++++|++|.|.++ .+.+. +..-++.+++|+.|+|.++...+.. .......+|+.+.+..+.....+.   -
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~  146 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred             CChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhc
Confidence            4556678899999999875 34332 3333678899999999887533211 112234677777776654211110   1


Q ss_pred             eCCceeEEEEecee
Q 014064          232 SAPNLLSFKYIGQD  245 (431)
Q Consensus       232 ~ap~L~~L~~~~~~  245 (431)
                      ..+.|+.+.+.+..
T Consensus       147 ~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         147 SLPNLVGITFDGNR  160 (313)
T ss_dssp             GCTTCCEEECCSSC
T ss_pred             cCcccceeeccccc
Confidence            23667777766553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.57  E-value=0.016  Score=45.98  Aligned_cols=22  Identities=9%  Similarity=0.063  Sum_probs=16.7

Q ss_pred             HHHHHHHHhhCCCcceEEEEee
Q 014064          321 LLGLSFIMKACPFLEKLVLQIW  342 (431)
Q Consensus       321 ~~~l~~ll~~~p~L~~L~i~~~  342 (431)
                      ...+...++.+++|++|.+++.
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCC
Confidence            3457788889999999888653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.57  E-value=0.017  Score=45.86  Aligned_cols=24  Identities=8%  Similarity=0.127  Sum_probs=16.3

Q ss_pred             hhHHHHHhcCCccceeeeccCCCC
Q 014064          180 EVVEFFIHNCPLLENLRITQSPDL  203 (431)
Q Consensus       180 ~~l~~ll~~cp~Le~L~L~~~~~~  203 (431)
                      +.++++...+|.|++|.|.++..+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i   28 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRV   28 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSS
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCC
Confidence            346677777788888888765433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.03  E-value=0.012  Score=46.90  Aligned_cols=121  Identities=13%  Similarity=0.128  Sum_probs=64.1

Q ss_pred             hhhccCCCceEEEeeeceeeecccc------cccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeecccccc
Q 014064          275 SIVSYLPQLKTLELDGCNEVFAQFS------QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRI  348 (431)
Q Consensus       275 ~~~~~~~~l~~L~l~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~  348 (431)
                      ++....+.|+.|.++....+....+      ....++|++|.|+.+.-.......+...+..++.|++|.+....    .
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~----i   84 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF----L   84 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB----C
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh----c
Confidence            4445556666666654321221111      11134566666543322222334567778888888888885532    1


Q ss_pred             CCCCcccc---cCccCCccEEEEeeee----cCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064          349 GKKRHQIS---KHSHQHLKLVELQGFN----GREIDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       349 ~~~~~~~~---~~~~~~L~~v~i~~~~----g~~~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                      ++.|....   -....+|+.+.+.+-.    |.+....+++.+-.| +.|+++.+.+..
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~~~  142 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS  142 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhC-CCccEeeCcCCC
Confidence            22221110   1234678888886532    334456677755544 899998886654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.85  E-value=0.017  Score=50.70  Aligned_cols=14  Identities=7%  Similarity=0.014  Sum_probs=7.4

Q ss_pred             ccCCCceEEEeeec
Q 014064          278 SYLPQLKTLELDGC  291 (431)
Q Consensus       278 ~~~~~l~~L~l~~~  291 (431)
                      ..+++|+.|.++..
T Consensus       239 ~~l~~L~~L~Ls~N  252 (305)
T d1xkua_         239 ADHKYIQVVYLHNN  252 (305)
T ss_dssp             TTCSSCCEEECCSS
T ss_pred             ccccCCCEEECCCC
Confidence            44555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.014  Score=53.97  Aligned_cols=36  Identities=14%  Similarity=0.337  Sum_probs=16.6

Q ss_pred             CceeEEEEeecCcchhhHHHhhhccCCCceEEEeeece
Q 014064          255 QLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  292 (431)
Q Consensus       255 ~L~~l~i~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~  292 (431)
                      +|+.+.++.....+  ..+.+++..+++++.|.+..+.
T Consensus         3 ~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~   38 (460)
T d1z7xw1           3 DIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCG   38 (460)
T ss_dssp             EEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSC
T ss_pred             CCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCC
Confidence            35555555333221  1122444555556666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.91  E-value=0.04  Score=43.44  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             hhhccCCCceEEEeeeceeeecccc---c---ccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEeecccccc
Q 014064          275 SIVSYLPQLKTLELDGCNEVFAQFS---Q---REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRI  348 (431)
Q Consensus       275 ~~~~~~~~l~~L~l~~~~~~~~~~~---~---~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~~~~~~~~  348 (431)
                      .+..+.+.|+.|++.....+....+   .   ...++|++|.|+.+.-.......+...++..+.++.|.+....    .
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~----~   86 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF----I   86 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC----C
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc----c
Confidence            4445556666666654322222111   1   1245666666654423334455677888899999998885432    1


Q ss_pred             CCCCcc---cccCccCCccEEEEeeee---cCchhHHHHHHHHhcCcccccEEEEeCC
Q 014064          349 GKKRHQ---ISKHSHQHLKLVELQGFN---GREIDFELAFYVFENATMLEKMIIKPSG  400 (431)
Q Consensus       349 ~~~~~~---~~~~~~~~L~~v~i~~~~---g~~~e~~l~~~ll~~a~~Le~m~i~~~~  400 (431)
                      +++|..   ..-...++|+.+.+....   |.+....+++. ++..+.|+++.+....
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~-L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH-HHhCCCcCEEeCcCCC
Confidence            111111   112345678888886432   33444556654 4567899999887654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.89  E-value=0.031  Score=41.83  Aligned_cols=62  Identities=19%  Similarity=0.197  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCC--ceeeeecCCCCcceEEeec
Q 014064          158 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDL--LSLKVVGSSIPLKCLDIQF  222 (431)
Q Consensus       158 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~--~~l~i~~~~~~L~~L~l~~  222 (431)
                      |..+..+++|++|.+.+..+++  +.. +..+|+|+.|.+.++.--  ..+.....+++|+.|.+.+
T Consensus        36 p~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          36 PPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             hhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            4445788999999999988765  222 678999999999887522  2221122345555555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.57  E-value=0.052  Score=43.85  Aligned_cols=63  Identities=14%  Similarity=0.103  Sum_probs=42.6

Q ss_pred             CCCCCCCCCEEEEeeEEEcchhHHHHHhcCCccceeeeccCCCCceeee--ecCCCCcceEEeeccC
Q 014064          160 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  224 (431)
Q Consensus       160 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i--~~~~~~L~~L~l~~c~  224 (431)
                      .+.++++|++|.|.+..+..-. ...+...+.|+.|.|.++. ++.+.-  -..+++|+.|.+++..
T Consensus        49 ~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          49 LFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             SGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC
T ss_pred             ccCCCceEeeeecccccccccc-ccccccccccceeeecccc-ccccCHHHHhCCCcccccccCCcc
Confidence            4567899999999988765421 2336678999999999885 333221  1244677777777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=89.83  E-value=0.32  Score=42.48  Aligned_cols=55  Identities=18%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             hhccCCCceEEEeeeceeeecccccccCCCccEEEEEEeecCcccHHHHHHHHhhCCCcceEEEEe
Q 014064          276 IVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  341 (431)
Q Consensus       276 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ll~~~p~L~~L~i~~  341 (431)
                      +...+++|+.|+++++. +.  .+|..+++|+.|.++.+.-  ....      +..++|++|+++.
T Consensus       279 ~~~~~~~L~~L~Ls~N~-l~--~lp~~~~~L~~L~L~~N~L--~~l~------~~~~~L~~L~L~~  333 (353)
T d1jl5a_         279 LCDLPPSLEELNVSNNK-LI--ELPALPPRLERLIASFNHL--AEVP------ELPQNLKQLHVEY  333 (353)
T ss_dssp             ECCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSCC--SCCC------CCCTTCCEEECCS
T ss_pred             ccccCCCCCEEECCCCc-cC--ccccccCCCCEEECCCCcC--Cccc------cccCCCCEEECcC
Confidence            33456788888887765 33  3455578888887743211  1111      2346788888754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.059  Score=41.99  Aligned_cols=67  Identities=21%  Similarity=0.114  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCCCEEEEeeEE-EcchhHHHHHhcCCccceeeeccCCCCceeeee--cCCCCcceEEeeccC
Q 014064          156 QSGCGLSGIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  224 (431)
Q Consensus       156 ~lp~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~  224 (431)
                      ..|..+..+++|+.|+|.+.. ++.-.. ..+.+.++|+.|.|.++. ++.+.-.  ..+++|+.|.+++..
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred             cCcccccCccccCeeecCCCccccccCc-hhhccccccCcceeeccc-cCCcccccccccccccceeccCCC
Confidence            344555677888888886542 321111 125678888888888774 3333211  234566666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=85.00  E-value=0.26  Score=43.04  Aligned_cols=52  Identities=12%  Similarity=0.013  Sum_probs=32.8

Q ss_pred             CCCcceEEeeccCCcceEEEeCCceeEEEEeceeeeeecCCCCCceeEEEEee
Q 014064          212 SIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVT  264 (431)
Q Consensus       212 ~~~L~~L~l~~c~~l~~i~i~ap~L~~L~~~~~~~~~~~~~~~~L~~l~i~~~  264 (431)
                      +++|+.|.+++|. +..+.-..|+|+.|.+.+..+.-.-..+++|+++.+..+
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N  334 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYN  334 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCc-cCccccccCCCCEEECCCCcCCccccccCCCCEEECcCC
Confidence            4678888888775 555444457888888777654322223456777777644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.58  E-value=0.52  Score=36.21  Aligned_cols=59  Identities=17%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             HhcCCccceeeeccCCCCceeeee--cCCCCcceEEeeccCCcceEEE----eCCceeEEEEecee
Q 014064          186 IHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI----SAPNLLSFKYIGQD  245 (431)
Q Consensus       186 l~~cp~Le~L~L~~~~~~~~l~i~--~~~~~L~~L~l~~c~~l~~i~i----~ap~L~~L~~~~~~  245 (431)
                      +.+.++|++|.|.+...++.+...  ..+++|+.|.+.++. +..+.-    ..++|++|++++..
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCC
Confidence            455677888888766555544322  234677777777664 444432    13555666555543