Citrus Sinensis ID: 014068

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHHccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEccccccHHHHHHccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccHccccccHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHcccccccccccccEcccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccHHHccccHccc
Coil and Loop (DISEMBL)
mqacryghWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVadfvpsvpfevmntqiegdrgdgssvkskcdqsALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVsavtfhygtsmdligagstplhfaacggnLKCCQVLLSRgasrmslncngwlpldVARMWGrhwlepllapssdavmprfhpsnylslplLSVLNVARecgllssttsssddadtCAVCLERACTVAAEGCRHELCVRCALYLcstnnipsemvgppgsipcplcrhgivsftklpgspvkdikqplslglctpcmlhtrdaecespacapeiRKNRVALvssdmlcpvtcspfpsvaiplctcndgpcpsfeprevetqdesprrsqggsveqdkmegprlerttcssmfwgrrscsrehqcnseina
Flexible Loop (DISEMBL)
MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTqiegdrgdgssVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSsttsssddadTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPrevetqdesprrsqggsveqdkmegprlerttcssmfwgrrscsrehqcnseina
Low Complexity Region (SEG)
MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLssttsssddadtCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Disordered region (IsUnstruct)
***CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ********************SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS******DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDG**************************************************************
Disordered Region (DISOPRED)
MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK****************************************************************I**********************************************************************
Disordered Region (DISEMBL)
MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG**************SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL**********DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFE****************************LERTTCSSMFWGR***************
Disordered Region (DISPRO)
MQA*RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCML**************************DMLCPVTCSPFPSVAIPLCTCNDGPC************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	431	2.2.26 [Sep-21-2011]
Q4FE45	513	E3 ubiquitin-protein liga	yes	no	0.974	0.818	0.708	1e-178
Q337A0	520	Probable E3 ubiquitin-pro	yes	no	0.995	0.825	0.618	1e-158
Q6KAE5	496	Probable E3 ubiquitin-pro	no	no	0.872	0.758	0.485	5e-94
Q7EZ44	495	Probable E3 ubiquitin-pro	no	no	0.712	0.620	0.518	4e-86
Q4JHE0	420	Probable E3 ubiquitin-pro	no	no	0.631	0.647	0.563	2e-85
Q6NLQ8	508	E3 ubiquitin-protein liga	no	no	0.658	0.559	0.529	8e-84
Q65XV2	450	E3 ubiquitin-protein liga	no	no	0.661	0.633	0.304	5e-27
Q94B55	456	Putative E3 ubiquitin-pro	no	no	0.603	0.570	0.307	8e-25
Q94CT7	446	Probable E3 ubiquitin-pro	no	no	0.598	0.578	0.301	8e-19
Q07E41	1665	Cortactin-binding protein	N/A	no	0.248	0.064	0.3	2e-10

>sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1

 Score =  624 bits (1609), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 313/442 (70%), Positives = 359/442 (81%), Gaps = 22/442 (4%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLFRCNVTRADYL+GRTALHFAAVNGH RCIRLV+ADF+PS   +
Sbjct: 83  MQACRYGHWEVVQTLLLFRCNVTRADYLAGRTALHFAAVNGHARCIRLVLADFLPS---D 139

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            +N+  E       + K+K +QSALSKFVNKAADGGITALHMAALNG FDCVQLLLDL A
Sbjct: 140 KLNSLPETGV---VTAKNKSEQSALSKFVNKAADGGITALHMAALNGLFDCVQLLLDLEA 196

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVSAVTFHYGTSMD+IGAGSTPLH+AACGGNLKCCQ+LL+RGA +M+LNCNGWLP+D+AR
Sbjct: 197 NVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQILLARGARKMTLNCNGWLPIDIAR 256

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MW RHWLEPLL+P+SD V+P F  SNYLSLPLLS+LN+ARE GL S+T    D+ D CAV
Sbjct: 257 MWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNIAREFGLQSATI--GDEVDICAV 314

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLER CTVAAEGC H+LCVRCALYLCS++N+PS  VGPPGSIPCPLCRHGI +F +LP S
Sbjct: 315 CLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPPGSIPCPLCRHGITAFKRLPSS 374

Query: 301 PVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIR---KNRVALVSSDMLCPVTCSPF 356
             +++K P+SLG C PCMLHT D  +  SP C P  +   K R A VSSD+ CPVTCSPF
Sbjct: 375 LTREMKLPMSLGFCAPCMLHTGDTTDQSSPTCPPTEQRSSKTRAASVSSDIFCPVTCSPF 434

Query: 357 PSVAIPLCTCNDGPCPSFEPREVETQDE-----SPRRSQGGSVEQDKM-EGPRLER-TTC 409
           PSV IP+CTCN+G CP+FE    E   E     SP R+   + EQ+K+ EG RL + TTC
Sbjct: 435 PSVNIPMCTCNEGTCPNFETHGTERHSEEHVESSPSRT---TTEQEKIEEGQRLGKTTTC 491

Query: 410 SSMFWGRRSCSREHQCNSEINA 431
           SSMFWGRRSCSRE+QCNSEINA
Sbjct: 492 SSMFWGRRSCSRENQCNSEINA 513

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q337A0|XB33_ORYSJ Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica GN=XBOS33 PE=2 SV=1

 Score =  556 bits (1434), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/440 (61%), Positives = 346/440 (78%), Gaps = 11/440 (2%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           M ACR+GHWEVVQ LLLFRCNVTRADYLSGRTALHFAA +G VRC+RL++ADFVPS P E
Sbjct: 83  MHACRHGHWEVVQMLLLFRCNVTRADYLSGRTALHFAAHDGLVRCVRLLLADFVPSAPLE 142

Query: 61  ------VMNTQIEGDRGDG--SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 112
                 V   + + + G    SS+  K ++SA  +++NK ADGG+TALHMAALNG+FDC+
Sbjct: 143 DGASSTVDGGECQTNSGSSPCSSLGLKFNESARLRYINKPADGGVTALHMAALNGHFDCM 202

Query: 113 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 172
           QLL+DL ANVSAVTF YGT+ +LIGAGSTPLH+AA GGN +CCQ+LLS+GAS+++LNCNG
Sbjct: 203 QLLIDLGANVSAVTFPYGTTANLIGAGSTPLHYAAGGGNAECCQLLLSKGASKLTLNCNG 262

Query: 173 WLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSS 232
           WLP+DVARM+GR +LEPLL+P+S++ +P + PSNYL+LP +S+LN+ARE GLL  T +S 
Sbjct: 263 WLPIDVARMFGRRFLEPLLSPNSNSSIPAYQPSNYLALPFMSILNIAREFGLL-HTVASV 321

Query: 233 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 292
           DD+D CAVCLER+C+VAAEGC HE C++CALYLCST+N   E  GPPGSIPCPLCR+GI+
Sbjct: 322 DDSDLCAVCLERSCSVAAEGCCHEFCIKCALYLCSTSNTRVEFTGPPGSIPCPLCRNGIM 381

Query: 293 SFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVT 352
           SFTKLP +P + +K   +L  C PCML+TR  +  +     EIR+NRVA VSS+++CP+T
Sbjct: 382 SFTKLPSTPTEGLKSSSALTFCNPCMLNTRSVDSPATISKAEIRRNRVAAVSSELVCPLT 441

Query: 353 CSPFPSVAIPLCTC-NDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSS 411
           CSPFPS A+P C C +D PC + E ++  ++ +SP+ S   S+E DK E   L+RT+CS 
Sbjct: 442 CSPFPSSALPTCRCSDDDPCDAIETQD-GSEVQSPQPSHCASMEMDKREQQDLDRTSCSG 500

Query: 412 MFWGRRSCSREHQCNSEINA 431
           MFW RRSC RE QCN+EINA
Sbjct: 501 MFWSRRSCHREEQCNAEINA 520

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6KAE5|XB32_ORYSJ Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2

 Score =  345 bits (884), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 198/408 (48%), Positives = 264/408 (64%), Gaps = 32/408 (7%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQAC+YGHWEVVQTL+LF  NV R DYL+G +ALHFAA++GH RC+RLV+AD+VPS+P  
Sbjct: 89  MQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAALHGHARCLRLVLADYVPSMP-N 147

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
             N+  +    +G S  +  D+  L K VN+ ADGG+T LHMAALNG+ +CVQLLLDL A
Sbjct: 148 FWNSMKDSLSEEGPS--ADLDEDGLFKMVNQKADGGLTPLHMAALNGHVECVQLLLDLGA 205

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V   T   GT++DLIGAGSTPLH+AACGGN  CCQ+L++RGAS  + N +GW PL VAR
Sbjct: 206 SVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLLIARGASLSAQNASGWTPLMVAR 265

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
            W R+ LE +L+   ++ + R  PS YL LPL+S++++ARE G       S    D CAV
Sbjct: 266 SWHRNSLEEILSKEPESRI-RTVPSPYLCLPLMSIMSIAREFG-WRYLNQSPVCIDPCAV 323

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG- 299
           CLE +C+VAAEGC+HE C RCALYLCST+      V P G+IPCPLCRH I++FT LPG 
Sbjct: 324 CLEGSCSVAAEGCKHEFCTRCALYLCSTSYTS---VSPAGAIPCPLCRHPIIAFTALPGT 380

Query: 300 SPVKDI-KQPLSLGLCTPCMLHTRDAECESPACAPEIRKN-----RVALVSSDMLCPVTC 353
           SP++++ +  LSL  CT C     D+   +P+ A  + +      R+  + S     ++C
Sbjct: 381 SPIRELPRNSLSLSFCTTCPAVNSDS---TPSIASHLYRTEFQCARMPPMGSSSFRSLSC 437

Query: 354 SPFPSVAIPLCTC----NDGPC--------PSFEPREVETQDESPRRS 389
              P++ +    C    +  PC        PSF  R   +Q ES RR+
Sbjct: 438 QRLPAMKLNPSFCMGAMDTNPCLIRCSRFGPSF--RRSASQGESSRRA 483

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7EZ44|XB35_ORYSJ Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica GN=XBOS35 PE=2 SV=1

 Score =  318 bits (816), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 165/318 (51%), Positives = 224/318 (70%), Gaps = 11/318 (3%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP-- 58
           MQAC YGHW+VVQ L+LF+ N+ + D  SG TA+HFAA+ GH RC+RL+VAD+VPS+P  
Sbjct: 89  MQACLYGHWKVVQILVLFKANIHKKDCFSGATAIHFAALKGHTRCLRLLVADYVPSLPEF 148

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
           + VM+ +   +       K   D  AL + +N  +DGG+T LH+AAL+G+ +CVQLLLDL
Sbjct: 149 WSVMHAKCTDETN-----KEAFDAVALRRLINNKSDGGVTPLHLAALHGHAECVQLLLDL 203

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
            A+VS VT + G+++DLIG+GSTPLH+AACGG+  CCQ+L++ GA+  + N NG  PL V
Sbjct: 204 GASVSEVTINDGSTIDLIGSGSTPLHYAACGGSAVCCQLLVAAGANMRAQNTNGLTPLMV 263

Query: 179 ARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTC 238
           AR W +  +E +L   S+ V  R  PS+YLSLPL+S++ +ARECG    T+ SS   D C
Sbjct: 264 ARSWHKSSVEGILTKRSE-VPVRILPSSYLSLPLMSIVKIARECG-WRKTSVSSVCHDPC 321

Query: 239 AVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 298
           A+CL+  CTV+AEGC HE C +CALYLC+T +  + + G PGSIPCPLCRH IVSF +L 
Sbjct: 322 AICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSIRGVPGSIPCPLCRHTIVSFVRLT 381

Query: 299 G-SPVKDIK-QPLSLGLC 314
             +P+K++     SL LC
Sbjct: 382 STTPIKELPWTNKSLALC 399

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4JHE0|XB36_ORYSJ Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica GN=XBOS36 PE=2 SV=1

 Score =  316 bits (810), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/305 (56%), Positives = 208/305 (68%), Gaps = 33/305 (10%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACR+GHWEVVQTLL+FRCNV R + LSGRTALH AA  GHV+C+RL+VAD        
Sbjct: 83  MQACRFGHWEVVQTLLVFRCNVWRVENLSGRTALHMAAAGGHVKCVRLLVADAA------ 136

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                  GDR DG              +VNKAA+GG+TALH+AAL+G+ +CV LL+D  A
Sbjct: 137 -------GDR-DG--------------YVNKAANGGVTALHLAALHGHVECVHLLIDERA 174

Query: 121 NVSAVTFH-YGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           +++A T       M  IGAGSTPLH+AACGG +KCCQ+L+SRGA R ++NCNGWLP+D A
Sbjct: 175 SLAAQTLPCAAPPMASIGAGSTPLHYAACGGEVKCCQILVSRGADRTAINCNGWLPIDAA 234

Query: 180 RMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGL-LSSTTSSSDD--AD 236
           R+WG +WLE +L+P S   +P+F PS YLS PL S++ +ARE GL LSS  S   D  AD
Sbjct: 235 RIWGCNWLEHVLSPKSHLPIPKFPPSGYLSQPLPSLIAIAREQGLNLSSEVSDGFDEGAD 294

Query: 237 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK 296
            CAVCLER CTVAAEGC HELCV+CA+ LCS      +  G  G IPCPLCR GI SF  
Sbjct: 295 ACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIK-SYDSAGIAGEIPCPLCRTGIASFRT 353

Query: 297 LPGSP 301
               P
Sbjct: 354 TAAPP 358

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana GN=XBAT32 PE=1 SV=1

 Score =  311 bits (796), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 163/308 (52%), Positives = 217/308 (70%), Gaps = 24/308 (7%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP-- 58
           MQAC++GHWEVV  L+LF  N+ R+DYL+G TALH AA+NGH RCIR+++++++PSVP  
Sbjct: 89  MQACQHGHWEVVLILILFGANIHRSDYLNGGTALHLAALNGHPRCIRILLSEYIPSVPNC 148

Query: 59  ---FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 115
               +   T + G            D S L + +N+AADGGIT LH+AALNG+ + VQLL
Sbjct: 149 WSLLKNKKTSVAG-----------FDSSVLHEVINRAADGGITPLHVAALNGHIETVQLL 197

Query: 116 LDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 175
           LDL A+V+ VT   GT++DLIGAGST LH+A+CGGN +CCQ+L+S+GA   ++N NGW P
Sbjct: 198 LDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCCQLLISKGACLAAVNSNGWTP 257

Query: 176 LDVARMWGRHWLEPLLAPSSDAVMPRFH----PSNYLSLPLLSVLNVARECGLLSSTTSS 231
           + VAR W R+WLE +L P+++   P+ H    PS +L LPL+S++N+A+ECG        
Sbjct: 258 MMVARSWHRNWLEEILNPTTE--QPQLHLPNVPSPFLCLPLMSIVNIAQECG-WRENDCL 314

Query: 232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVG-PPGSIPCPLCRHG 290
           +   D CAVCLER CTVAA+GC HE C  CALYL +T+   S+     PGS+PCPLCR+G
Sbjct: 315 TPCRDPCAVCLERKCTVAADGCAHEFCTNCALYLSTTSITSSKTSNVTPGSVPCPLCRNG 374

Query: 291 IVSFTKLP 298
           IVSFTKLP
Sbjct: 375 IVSFTKLP 382

E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS). Negatively regulates ethylene biosynthesis probably via ubiquitin-dependent degradation of ACS4 and ACS7 enzymes. Regulates lateral root formation and development by controlling ethylene production which inhibits lateral root formation at high concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica GN=XB3 PE=1 SV=1

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 139/341 (40%), Gaps = 56/341 (16%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           M A  +G  + V  LL    N+   D +  RT LH AA  GHV C++ ++A         
Sbjct: 85  MLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHHAAYYGHVDCLQAILA--------- 135

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                        +      D    ++FVN   D G T LH+AA  G   CVQ+LL+  A
Sbjct: 136 ------------AAQTTPVADSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGA 183

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
            VSA+T  YG        GST LH AA  GNL C + LL+ GA R+  +  G +P  VA 
Sbjct: 184 IVSALTGSYGFP------GSTSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVAL 237

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSL----------PLLSVLNVARECGLLSSTTS 230
                    LL P+S   M    P  ++S             L   N  RE  +L+ T  
Sbjct: 238 KRNHGACAALLNPTSAEPMVWPSPLKFISELEPEAKALLEAALMEANREREKKILNGTKY 297

Query: 231 S------------------SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIP 272
           S                    D + C +C ++ACT+  + C H++C  C L LC  N   
Sbjct: 298 SLPSPSPGDDSADDDACSEVSDTELCCICFDQACTIEVQDCGHQMCAPCTLALCCHNKPN 357

Query: 273 SEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGL 313
              + PP S  CP CR  I            D  +P SL L
Sbjct: 358 PTTLTPP-SPACPFCRGSISRLVVAQTRSACDPDKPSSLQL 397

E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score =  115 bits (287), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 137/319 (42%), Gaps = 59/319 (18%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           M A  YG    V+ L     N+   D ++ RT LH+AA  GH  C++ +++    S P  
Sbjct: 84  MLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYAAYYGHANCVQAILS-AAQSSPVA 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
           V                        ++FVN   D G T LH+AA     +CV +LLD  +
Sbjct: 143 V--------------------HWGYARFVNIRDDKGATPLHLAARQRRPECVNVLLDSGS 182

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
            V A T  YG+       GSTPLH AA  G++ C + LL+ GA R+  + +G +P  VA 
Sbjct: 183 LVCASTSVYGS------PGSTPLHLAARSGSIDCVRKLLAWGADRLQRDASGRIPYVVA- 235

Query: 181 MWGRHWL----------EPLLAPSSDAVMPRFHPSNYLSLP-LLSVLNVARECGLLSSTT 229
           M  +H            EPL+ PS    +   +    L L   L   N  RE  +L  T 
Sbjct: 236 MKHKHGACGALLNPSSAEPLVWPSPLKFISELNDEAKLLLEQALMEANREREKTILKGTA 295

Query: 230 ---------------SSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTN--NIP 272
                          S   D + C +C E+ CT+  + C H++C +C L LC  N  N  
Sbjct: 296 YSLPSPSFSDTDDNMSEVSDTELCCICFEQVCTIEVKDCGHQMCAQCTLALCCHNKPNPT 355

Query: 273 SEMVGPPGSIPCPLCRHGI 291
           +  V PP    CP CR  I
Sbjct: 356 TSTVTPP---VCPFCRSTI 371

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica GN=XBOS31 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 137/318 (43%), Gaps = 60/318 (18%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           M A   G+ E V  LL    NV   D    RT LH AA  GH  C++ ++          
Sbjct: 85  MVAAMRGNTECVVRLLRGGANVLTFDSPRARTCLHHAAYYGHAECLQAIL---------- 134

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSA---LSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                       G++ +++   +A    ++FVN   + G T LH+AA +    CV+LLLD
Sbjct: 135 ------------GAAAQAQGPVAASWGFARFVNVRDERGATPLHLAARHARASCVRLLLD 182

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             A VSA T  YG        GST LH AA  G+++C + LL+ GA R+  +  G +   
Sbjct: 183 KGAIVSAPTAVYGFP------GSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYA 236

Query: 178 VARMWGRHWLEPLLAPSSDAVMPRFHPS------------NYLSLPLLSVLNVARECGLL 225
           VA   G      LL P+  A  P   PS              L    L   N  RE  +L
Sbjct: 237 VAMRRGHRACAALLNPA--AAEPIVWPSPLKFIGELEADAKALLEAALMEANREREKRIL 294

Query: 226 SST----------TSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLC--STNNIPS 273
             +            S D+ + C +C E+AC++  + C H++C  C L +C  S  N  +
Sbjct: 295 HGSDINIKGGDEEEESEDEEEACNICFEQACSMEVKECGHQMCAACTLAICCHSKPNPKT 354

Query: 274 EMVGPPGSIPCPLCRHGI 291
            ++ PP    CP CR  I
Sbjct: 355 LLLHPPA---CPFCRTTI 369

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q07E41|CTTB2_DASNO Cortactin-binding protein 2 OS=Dasypus novemcinctus GN=CTTNBP2 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 62/150 (41%), Gaps = 43/150 (28%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G +AL+ AA NGH  C+RL+            +N + + D  D                 
Sbjct: 746 GHSALYSAAKNGHTDCVRLL------------LNAKAQIDAAD----------------- 776

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
                 G T L  AA  G+F+CV+LL+  HAN+                G TPL+ A   
Sbjct: 777 ----KNGFTPLCAAAAQGHFECVELLIAYHANIDHAA----------DGGQTPLYLACKN 822

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           GN +C +VLL  G  R     +GW P+  A
Sbjct: 823 GNKECIKVLLEAGTDRSVKTRDGWTPVHAA 852

Dasypus novemcinctus (taxid: 9361)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
225455410	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.839	0.865	0.0
255539509	513	ankyrin repeat-containing protein, putat	0.997	0.838	0.856	0.0
224136956	511	predicted protein [Populus trichocarpa]	0.993	0.837	0.841	0.0
224120064	511	predicted protein [Populus trichocarpa]	0.995	0.839	0.816	0.0
449451763	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.839	0.784	0.0
356575939	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.839	0.793	0.0
356530884	511	PREDICTED: E3 ubiquitin-protein ligase X	0.995	0.839	0.784	0.0
356535892	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.839	0.786	0.0
356559851	511	PREDICTED: E3 ubiquitin-protein ligase X	0.995	0.839	0.777	0.0
358343696	513	Ankyrin repeat-containing protein [Medic	0.997	0.838	0.756	0.0

>gi|225455410|ref|XP_002278915.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Vitis vinifera] gi|297741088|emb|CBI31819.3| unnamed protein product [Vitis vinifera]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/431 (86%), Positives = 402/431 (93%), Gaps = 1/431 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS P E
Sbjct: 83  MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPHE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            +N Q  GDRGDGS++K+K DQSAL+KFVNKAADGGITALHMAALNGYFDCVQLLLD+HA
Sbjct: 143 AINVQNNGDRGDGSNLKNKYDQSALAKFVNKAADGGITALHMAALNGYFDCVQLLLDIHA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVSAVTFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+LL+RGASR++LNCNGWLPLDVAR
Sbjct: 203 NVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRLTLNCNGWLPLDVAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLLAP+SD+++P F PSN LSLPL+SVLN+ARECGL SSTT SSD+ D CAV
Sbjct: 263 MWGRHWLEPLLAPNSDSIIPVFPPSNCLSLPLMSVLNIARECGLQSSTT-SSDETDICAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLERACTVAAEGC HELCVRCALYLCST+NIPSEMVGPPGSIPCPLCRHGI SF KLPGS
Sbjct: 322 CLERACTVAAEGCGHELCVRCALYLCSTSNIPSEMVGPPGSIPCPLCRHGITSFVKLPGS 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
           P K+IK  LSLGLCTPCMLH R+++  SPAC PEIRKNRVA VSSD+LCPV+CSPFPSV 
Sbjct: 382 PAKEIKLHLSLGLCTPCMLHPRESDRPSPACTPEIRKNRVASVSSDILCPVSCSPFPSVT 441

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTC+DGPCPSFEPREVETQDESPRRSQ  S++QDKMEG RLERT+CSSMFWGRRSCS
Sbjct: 442 IPLCTCDDGPCPSFEPREVETQDESPRRSQTTSIDQDKMEGARLERTSCSSMFWGRRSCS 501

Query: 421 REHQCNSEINA 431
           REHQCNSEINA
Sbjct: 502 REHQCNSEINA 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539509|ref|XP_002510819.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549934|gb|EEF51421.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/432 (85%), Positives = 394/432 (91%), Gaps = 2/432 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH RCIRLVVADF+PS PFE
Sbjct: 83  MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHARCIRLVVADFIPSSPFE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
             ++Q E D  D SS K K DQ ALSKFVNKAADGGITALHMAALNGYFDCVQLLLD+HA
Sbjct: 143 ATHSQPEVDPADASSAKHKFDQCALSKFVNKAADGGITALHMAALNGYFDCVQLLLDIHA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVSAVTFHYGT+MDLIGAGSTPLH+AACGGNLKCCQ+L++RGASRM+LNCNGWLP+DVAR
Sbjct: 203 NVSAVTFHYGTTMDLIGAGSTPLHYAACGGNLKCCQILIARGASRMTLNCNGWLPVDVAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLLAP SD+V+PRF  SN+LSLPLLSVLN+ARECG+   TT SSDD D CAV
Sbjct: 263 MWGRHWLEPLLAPYSDSVVPRFPHSNFLSLPLLSVLNIARECGMQCLTT-SSDDPDICAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLERAC VAAEGCRHELCVRCALYLCST+NIPSEMVGPPGSIPCPLCRH IVSF KLPGS
Sbjct: 322 CLERACNVAAEGCRHELCVRCALYLCSTSNIPSEMVGPPGSIPCPLCRHAIVSFEKLPGS 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
           P K+IK PLSLGLCTPCMLH+RD + +SPAC PEIRKNRVA VSSD LCPVTCSPFPSVA
Sbjct: 382 PAKEIKLPLSLGLCTPCMLHSRDTDGQSPACVPEIRKNRVASVSSDFLCPVTCSPFPSVA 441

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSS-MFWGRRSC 419
           IPLCTCNDGPCPSFEPR VETQDESPR SQ  SVEQDK+EGPRLE+T+CS  MFWGRRSC
Sbjct: 442 IPLCTCNDGPCPSFEPRTVETQDESPRGSQATSVEQDKIEGPRLEKTSCSGMMFWGRRSC 501

Query: 420 SREHQCNSEINA 431
           SREHQCNSEINA
Sbjct: 502 SREHQCNSEINA 513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136956|ref|XP_002322458.1| predicted protein [Populus trichocarpa] gi|222869454|gb|EEF06585.1| predicted protein [Populus trichocarpa]

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/430 (84%), Positives = 394/430 (91%), Gaps = 2/430 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLFRCNV RADYLSGRTALHFAAVNGHVRCIRLVVADFVPS PFE
Sbjct: 83  MQACRYGHWEVVQTLLLFRCNVIRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSAPFE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            M+TQ+EGD  DGSSVK++ DQSALS+FVNKAADGGITALH+AALNGYFDCVQLLLD+HA
Sbjct: 143 AMHTQMEGDTRDGSSVKNRFDQSALSRFVNKAADGGITALHIAALNGYFDCVQLLLDIHA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVS+VTFHYGT+MDLIGAGSTPLH+AACGG+LKCCQ+LL+RGASRM+LNCNGWLP+DVAR
Sbjct: 203 NVSSVTFHYGTTMDLIGAGSTPLHYAACGGSLKCCQILLARGASRMTLNCNGWLPVDVAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLLAP+SD+ +PRF  SNYLSLPLLSVLN+ARE G+  S  S+SDD D CAV
Sbjct: 263 MWGRHWLEPLLAPNSDSAIPRFPHSNYLSLPLLSVLNIARESGMHCS-VSASDDPDICAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLERAC VAAEGC HELCVRCALYLCST NIPSEMVGP GSIPCPLCRHGIVSF +LPGS
Sbjct: 322 CLERACNVAAEGCGHELCVRCALYLCSTCNIPSEMVGPTGSIPCPLCRHGIVSFVRLPGS 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
             K++K PLSLGLCTPCMLH+ D + +SPAC PE+RKNRV  VSSD LCPVTCSPFPSVA
Sbjct: 382 SAKEMKLPLSLGLCTPCMLHSHDVDGQSPACLPEVRKNRVVSVSSDFLCPVTCSPFPSVA 441

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTCNDGPCPSFEP+EVE+QDES  R Q  SVEQDKMEGPRLE+T+CSSMFWGRRSCS
Sbjct: 442 IPLCTCNDGPCPSFEPQEVESQDESSHRPQ-TSVEQDKMEGPRLEKTSCSSMFWGRRSCS 500

Query: 421 REHQCNSEIN 430
           REHQCNSEIN
Sbjct: 501 REHQCNSEIN 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120064|ref|XP_002318233.1| predicted protein [Populus trichocarpa] gi|222858906|gb|EEE96453.1| predicted protein [Populus trichocarpa]

 Score =  722 bits (1864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/431 (81%), Positives = 383/431 (88%), Gaps = 2/431 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLFRCNVTRADYL+GRTALHFAAVNGH RCIRLVVADFVPS PFE
Sbjct: 83  MQACRYGHWEVVQTLLLFRCNVTRADYLNGRTALHFAAVNGHARCIRLVVADFVPSAPFE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            M+ +IEGD GDGSS K++ DQSALS+FVNKAADGGITALHM ALNGYFDCVQLLLD+HA
Sbjct: 143 AMHARIEGDTGDGSSEKNRFDQSALSRFVNKAADGGITALHMVALNGYFDCVQLLLDIHA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVS+ TFHYGT+MDLIGAGSTPLH+AACGGNLKCCQ+LL+RGASR +LNCNGWLP+DVAR
Sbjct: 203 NVSSETFHYGTTMDLIGAGSTPLHYAACGGNLKCCQILLARGASRTTLNCNGWLPVDVAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLLA +S++ +PRF  SNYL+LPLLSVLN+ARE GL  S T SSDD D CAV
Sbjct: 263 MWGRHWLEPLLATNSESTIPRFPHSNYLALPLLSVLNIARESGLQCS-TRSSDDPDICAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLERAC VAAEGCRHELCVRCAL LCST NI SEMVGP GSIPCPLCRHGIVSF +LPGS
Sbjct: 322 CLERACNVAAEGCRHELCVRCALCLCSTCNISSEMVGPTGSIPCPLCRHGIVSFDRLPGS 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
             K++K PLSLGLC PCMLH RD + +S AC PE+RKNRVA VSSD LCPVTCSPFPSVA
Sbjct: 382 SAKEMKLPLSLGLCAPCMLHPRDMDGKSLACLPEVRKNRVASVSSDFLCPVTCSPFPSVA 441

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTCND PCPS E +E E+QDES  RSQ  SVEQ K+EGPRLE+T+CSSMFWGRRSCS
Sbjct: 442 IPLCTCNDEPCPSLETQEAESQDESSHRSQ-TSVEQVKVEGPRLEKTSCSSMFWGRRSCS 500

Query: 421 REHQCNSEINA 431
           REHQC SEINA
Sbjct: 501 REHQCTSEINA 511

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451763|ref|XP_004143630.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Cucumis sativus] gi|449506474|ref|XP_004162759.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Cucumis sativus]

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/431 (78%), Positives = 383/431 (88%), Gaps = 1/431 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLL+FRCNV RADYLSGRTALHFAAVNGHVRC+RL+VADFVPSVP+E
Sbjct: 83  MQACRYGHWEVVQTLLVFRCNVMRADYLSGRTALHFAAVNGHVRCLRLIVADFVPSVPYE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            +N+Q    R DG +VK+KC+Q ALSKF+NKAADGGITALHMAALNGY+DCV LLLDLHA
Sbjct: 143 AINSQSVVSRSDGVNVKNKCEQGALSKFINKAADGGITALHMAALNGYYDCVHLLLDLHA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVSAVTFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+LL+RGASRM+LNCNGWLPLDVAR
Sbjct: 203 NVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMTLNCNGWLPLDVAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLL P+SD+++PRF  SN+LSLPLLS LN+ARECG   S  ++SDD DTCAV
Sbjct: 263 MWGRHWLEPLLVPNSDSILPRFPTSNHLSLPLLSALNIARECG-FKSMGATSDDGDTCAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLER C+VAAEGC HELCVRCALYLCST+NI SEM+G  GSIPCPLCRHGI+SF KL G+
Sbjct: 322 CLERVCSVAAEGCGHELCVRCALYLCSTSNIHSEMIGSLGSIPCPLCRHGIISFVKLSGA 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
             K+ +  LSL +C+PC+LHT DAE ++  C PEIRKNRVA VSSD+ CPVTCSPFPS A
Sbjct: 382 TAKEKQLHLSLSICSPCILHTGDAEDQASTCTPEIRKNRVASVSSDVFCPVTCSPFPSAA 441

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTCNDGPCP+FE R+V T+DESPR+SQ   ++QDK+ GPR ERT+CSSMFWGRRSCS
Sbjct: 442 IPLCTCNDGPCPTFESRDVGTEDESPRQSQATPIDQDKLGGPRSERTSCSSMFWGRRSCS 501

Query: 421 REHQCNSEINA 431
           RE+QCNSEINA
Sbjct: 502 RENQCNSEINA 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575939|ref|XP_003556093.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/431 (79%), Positives = 381/431 (88%), Gaps = 1/431 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEV QTLLLFRCNV RADYLSGRTALHFAAV+GHVRCIRLVVADFVPS P++
Sbjct: 83  MQACRYGHWEVAQTLLLFRCNVIRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSAPYQ 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            ++     DRG GS+VK K + SALSKFVNK ADGGITALHMAALNGYFDCVQLLLDL+A
Sbjct: 143 AIHAGTAVDRGGGSNVKGKHEHSALSKFVNKTADGGITALHMAALNGYFDCVQLLLDLNA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NV+AVT++YGTSMDLIGAGSTPLH+AACGGNLKCCQ+L++ GASR++LNCNGWLPLD+AR
Sbjct: 203 NVNAVTYNYGTSMDLIGAGSTPLHYAACGGNLKCCQILVAHGASRLALNCNGWLPLDIAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLE LLAPSSDA MP F  SNYLSLPL+SVLN+ARE GL SS T+SSD+ D CAV
Sbjct: 263 MWGRHWLEQLLAPSSDATMPTFSHSNYLSLPLMSVLNIAREYGLQSS-TASSDEIDFCAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLER C+VAAEGC HELCVRCALYLCSTNN+ SEMVGPPGSIPCPLCRHG+VSF KLPGS
Sbjct: 322 CLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMVGPPGSIPCPLCRHGVVSFVKLPGS 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
             K+ K  +SLGLCTPCMLH RD +  S +  PE+ +NRVA V S++LCPVTCSPFPS+A
Sbjct: 382 QAKENKLHVSLGLCTPCMLHPRDLDKPSLSHTPEVGRNRVASVPSEILCPVTCSPFPSMA 441

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTCNDGPCPSFEPREVETQD  P  SQ  +V+QDK+EGPRL++TTCSSMFWGRRSCS
Sbjct: 442 IPLCTCNDGPCPSFEPREVETQDGLPHHSQASTVDQDKIEGPRLDKTTCSSMFWGRRSCS 501

Query: 421 REHQCNSEINA 431
           REHQCNSEINA
Sbjct: 502 REHQCNSEINA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530884|ref|XP_003534009.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/431 (78%), Positives = 375/431 (87%), Gaps = 2/431 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLF+CNV +ADYLSGRTALHFAA+NGH RCIRLVVADFVPS PFE
Sbjct: 83  MQACRYGHWEVVQTLLLFKCNVMKADYLSGRTALHFAAINGHARCIRLVVADFVPSAPFE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            ++  +  + GD S+VK+K +QSALSKF+NK AD GITALHMAALNGYFDCVQLLLDL A
Sbjct: 143 ALHAHMVAE-GDASNVKNKYEQSALSKFINKTADAGITALHMAALNGYFDCVQLLLDLSA 201

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVSA TFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+LL+RGASRM+LNCNGWLPLDVAR
Sbjct: 202 NVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVAR 261

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLL P+SDA +  F  SNYLSLPL+SVLN+ARECGL  STT+SS++ D CAV
Sbjct: 262 MWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNIARECGL-QSTTTSSNEVDACAV 320

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLER C+VAAEGC HELCVRCALYLCST+N+ SE  GPPGSIPCPLCRHGIVSF KL GS
Sbjct: 321 CLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETGGPPGSIPCPLCRHGIVSFVKLSGS 380

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
             K+ K  +SL LCTPCMLH RD +  S +  PEIR+NRVA V S+MLCPVTC+PFPSVA
Sbjct: 381 KAKENKLHVSLSLCTPCMLHPRDLDRPSLSLTPEIRRNRVASVPSEMLCPVTCTPFPSVA 440

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTCNDGPCPSFEPRE E QD SPR SQ   ++Q+KM+GPRLE+ TCS MFWGRRSCS
Sbjct: 441 IPLCTCNDGPCPSFEPREAEAQDGSPRHSQAAMMDQNKMDGPRLEKMTCSGMFWGRRSCS 500

Query: 421 REHQCNSEINA 431
           REHQCNSEINA
Sbjct: 501 REHQCNSEINA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535892|ref|XP_003536476.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  706 bits (1821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/431 (78%), Positives = 380/431 (88%), Gaps = 1/431 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLFRCNV RADYLSGRTALHFAAV+GHVRCIRLVVADFVPS  ++
Sbjct: 83  MQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAAVHGHVRCIRLVVADFVPSALYQ 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            ++   + DRG GS+ K K +QSALSKF+NK ADGGITALHMAALNGYFDCVQLLLDL+A
Sbjct: 143 AIHAGTDVDRGGGSNAKGKHEQSALSKFINKTADGGITALHMAALNGYFDCVQLLLDLNA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NV+AVT+HYGTSMDLIGAGSTPLH+ ACGGNLKCCQ+L++RGASR++LNCNGWLPLD+AR
Sbjct: 203 NVNAVTYHYGTSMDLIGAGSTPLHYGACGGNLKCCQILVARGASRLALNCNGWLPLDIAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLE LLAPSSDA +P F  SNYLSLPL+SVLN+ARE GL SS T SSD+ D CAV
Sbjct: 263 MWGRHWLEQLLAPSSDASIPTFSHSNYLSLPLMSVLNIAREYGLQSSPT-SSDEIDFCAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLER C+VAAEGC HELCVRCALYLCSTNN+ SEM+GPPGSIPCPLCRHG+VSF KLPGS
Sbjct: 322 CLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMLGPPGSIPCPLCRHGVVSFVKLPGS 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
             K+ K  +SLGLCTPC+LH RD +  S +  PEI +NRVA V S++ CPVTCSPFPS+A
Sbjct: 382 QAKENKLHVSLGLCTPCILHPRDLDQPSLSHTPEIGRNRVASVPSEIRCPVTCSPFPSMA 441

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTCNDGPCPSFEP EVETQD SP  SQ  +V+QDK+EGPRL++TTCSSMFWGRRSCS
Sbjct: 442 IPLCTCNDGPCPSFEPGEVETQDGSPHHSQASTVDQDKIEGPRLDKTTCSSMFWGRRSCS 501

Query: 421 REHQCNSEINA 431
           REHQCNSEINA
Sbjct: 502 REHQCNSEINA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559851|ref|XP_003548210.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/431 (77%), Positives = 376/431 (87%), Gaps = 2/431 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACRYGHWEVVQTLLLFRCNV +ADYLSGRTALHFAA+NGH RCIRLV+ADFVPS PFE
Sbjct: 83  MQACRYGHWEVVQTLLLFRCNVVKADYLSGRTALHFAAINGHARCIRLVLADFVPSAPFE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            ++ +I+ + GDGS+VK+K +QS LSKFVNK AD GITALHMAALNG+FDCVQLLLDL+A
Sbjct: 143 ALHARIDAE-GDGSNVKNKHEQSVLSKFVNKTADAGITALHMAALNGHFDCVQLLLDLNA 201

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           NVSA TFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+LL+RGASRM+LNCNGWLPLDVAR
Sbjct: 202 NVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMALNCNGWLPLDVAR 261

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLL P+SDA +  F  SNYLSLPL+SVLN+ARECGL  STT+SS++ D CAV
Sbjct: 262 MWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNIARECGL-QSTTTSSNEVDVCAV 320

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLER C+VAAEGC HELCVRCALYLCST+N+ SE  GPPGSIPCPLCRHGI+SF KLPGS
Sbjct: 321 CLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETCGPPGSIPCPLCRHGIISFVKLPGS 380

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVA 360
             K+ K  +SL LCTPCMLH  D +  + +  PEIR+NRVA V S+MLCPVTC+PFPSVA
Sbjct: 381 QAKENKLHVSLSLCTPCMLHPCDLDRPTVSHTPEIRRNRVASVPSEMLCPVTCTPFPSVA 440

Query: 361 IPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCS 420
           IPLCTCN+GPCPSFEPRE E Q  SP  S    ++QDKM+GPRLE+TTCS MFWGRRSCS
Sbjct: 441 IPLCTCNNGPCPSFEPREAEAQGGSPLHSHASMMDQDKMDGPRLEKTTCSGMFWGRRSCS 500

Query: 421 REHQCNSEINA 431
           REHQCNSEINA
Sbjct: 501 REHQCNSEINA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343696|ref|XP_003635934.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355501869|gb|AES83072.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/432 (75%), Positives = 370/432 (85%), Gaps = 2/432 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           MQACR+G+WEVVQTL+L+RCNV +ADYLSGRTALHFAAV+GHVRCIRLVVAD VPS P+E
Sbjct: 83  MQACRHGYWEVVQTLMLYRCNVMKADYLSGRTALHFAAVSGHVRCIRLVVADLVPSAPYE 142

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            ++ +++ D GDGS+ K K +QS LSKFVNK AD GITALHMAALNGYFDCVQLLLDL+A
Sbjct: 143 TLHARVDADVGDGSNTKRKNEQSELSKFVNKTADAGITALHMAALNGYFDCVQLLLDLNA 202

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           N SA T+HYGTSMDLIGAGSTPLH+AACGGNLKCCQ+LLS+GA+RM+LNCNGWLPLDVAR
Sbjct: 203 NASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLSKGATRMALNCNGWLPLDVAR 262

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAV 240
           MWGRHWLEPLLAPSSD ++  F  SNYL LPL+SVLN+ARE GL S TT SS++ D CAV
Sbjct: 263 MWGRHWLEPLLAPSSDTIVSSFPTSNYLLLPLMSVLNIAREYGLHSPTT-SSNEIDFCAV 321

Query: 241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
           CLER CTVAAEGC HELCVRCALYLCST N+ SEM GPPGS+PCPLCRHGI+SF KLP  
Sbjct: 322 CLERPCTVAAEGCMHELCVRCALYLCSTANVSSEMHGPPGSVPCPLCRHGIISFVKLPSF 381

Query: 301 PVKDIKQPLSLGLCTPCMLHTRDAECESPA-CAPEIRKNRVALVSSDMLCPVTCSPFPSV 359
             K+ K   SL +CTPC+ H RD +  S +    EIRKNRVA VSS+MLCPVTC+PFPSV
Sbjct: 382 QPKENKLHASLSMCTPCIQHPRDIDQSSFSHNTSEIRKNRVASVSSEMLCPVTCTPFPSV 441

Query: 360 AIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSC 419
           AIPLCTCNDGPCP FEP E ETQDESPR SQ  + +QDKMEGP+L + TCS+MFWGRRSC
Sbjct: 442 AIPLCTCNDGPCPPFEPGEDETQDESPRHSQASTTDQDKMEGPKLVKKTCSNMFWGRRSC 501

Query: 420 SREHQCNSEINA 431
           SRE+QCNSEINA
Sbjct: 502 SRENQCNSEINA 513

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2182860	513	XBAT33 "XB3 ortholog 3 in Arab	0.981	0.824	0.706	9.7e-167
TAIR|locus:2172600	508	XBAT32 "AT5G57740" [Arabidopsi	0.895	0.759	0.452	3.4e-84
UNIPROTKB|Q65XV2	450	XB3 "E3 ubiquitin-protein liga	0.285	0.273	0.395	5e-20
TAIR|locus:2053205	456	XBAT31 "XB3 ortholog 1 in Arab	0.464	0.438	0.324	2.3e-18
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.410	0.093	0.315	1.9e-09
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.410	0.155	0.305	1e-08
ZFIN|ZDB-GENE-010724-11	672	ppp1r12c "protein phosphatase	0.232	0.148	0.398	1.8e-08
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.410	0.095	0.305	1e-07
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.410	0.094	0.305	1.1e-07
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.410	0.092	0.305	1.1e-07

TAIR|locus:2182860 XBAT33 "XB3 ortholog 3 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 1622 (576.0 bits), Expect = 9.7e-167, P = 9.7e-167
 Identities = 310/439 (70%), Positives = 353/439 (80%)

Query:     1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             MQACRYGHWEVVQTLLLFRCNVTRADYL+GRTALHFAAVNGH RCIRLV+ADF+PS   +
Sbjct:    83 MQACRYGHWEVVQTLLLFRCNVTRADYLAGRTALHFAAVNGHARCIRLVLADFLPS---D 139

Query:    61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
              +N+  E   G  ++ K+K +QSALSKFVNKAADGGITALHMAALNG FDCVQLLLDL A
Sbjct:   140 KLNSLPE--TGVVTA-KNKSEQSALSKFVNKAADGGITALHMAALNGLFDCVQLLLDLEA 196

Query:   121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
             NVSAVTFHYGTSMD+IGAGSTPLH+AACGGNLKCCQ+LL+RGA +M+LNCNGWLP+D+AR
Sbjct:   197 NVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQILLARGARKMTLNCNGWLPIDIAR 256

Query:   181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLXXXXXXXXXXXXCAV 240
             MW RHWLEPLL+P+SD V+P F  SNYLSLPLLS+LN+ARE GL             CAV
Sbjct:   257 MWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNIAREFGL--QSATIGDEVDICAV 314

Query:   241 CLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 300
             CLER CTVAAEGC H+LCVRCALYLCS++N+PS  VGPPGSIPCPLCRHGI +F +LP S
Sbjct:   315 CLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPPGSIPCPLCRHGITAFKRLPSS 374

Query:   301 PVKDIKQPLSLGLCTPCMLHTRDA-ECESPACAP-EIR--KNRVALVSSDMLCPVTCSPF 356
               +++K P+SLG C PCMLHT D  +  SP C P E R  K R A VSSD+ CPVTCSPF
Sbjct:   375 LTREMKLPMSLGFCAPCMLHTGDTTDQSSPTCPPTEQRSSKTRAASVSSDIFCPVTCSPF 434

Query:   357 PSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGG--SVEQDKME-GPRLERTT-CSSM 412
             PSV IP+CTCN+G CP+FE    E   E    S     + EQ+K+E G RL +TT CSSM
Sbjct:   435 PSVNIPMCTCNEGTCPNFETHGTERHSEEHVESSPSRTTTEQEKIEEGQRLGKTTTCSSM 494

Query:   413 FWGRRSCSREHQCNSEINA 431
             FWGRRSCSRE+QCNSEINA
Sbjct:   495 FWGRRSCSRENQCNSEINA 513

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2172600 XBAT32 "AT5G57740" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 190/420 (45%), Positives = 257/420 (61%)

Query:     1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             MQAC++GHWEVV  L+LF  N+ R+DYL+G TALH AA+NGH RCIR+++++++PSVP  
Sbjct:    89 MQACQHGHWEVVLILILFGANIHRSDYLNGGTALHLAALNGHPRCIRILLSEYIPSVPN- 147

Query:    61 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                + ++  +   +SV    D S L + +N+AADGGIT LH+AALNG+ + VQLLLDL A
Sbjct:   148 -CWSLLKNKK---TSVAG-FDSSVLHEVINRAADGGITPLHVAALNGHIETVQLLLDLGA 202

Query:   121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
             +V+ VT   GT++DLIGAGST LH+A+CGGN +CCQ+L+S+GA   ++N NGW P+ VAR
Sbjct:   203 SVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCCQLLISKGACLAAVNSNGWTPMMVAR 262

Query:   181 MWGRHWLEPLLAPSSDAVMPRFH----PSNYLSLPLLSVLNVARECGLLXXXXXXXXXXX 236
              W R+WLE +L P+++   P+ H    PS +L LPL+S++N+A+ECG             
Sbjct:   263 SWHRNWLEEILNPTTE--QPQLHLPNVPSPFLCLPLMSIVNIAQECGW-RENDCLTPCRD 319

Query:   237 XCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVG--PPGSIPCPLCRHGIVSF 294
              CAVCLER CTVAA+GC HE C  CALYL ST +I S       PGS+PCPLCR+GIVSF
Sbjct:   320 PCAVCLERKCTVAADGCAHEFCTNCALYL-STTSITSSKTSNVTPGSVPCPLCRNGIVSF 378

Query:   295 TKLPGSPVK-----DIKQPLSLGLCTPCMLHTRD-AECESP--ACAPEIRK--NRVALVS 344
             TKLP +          +  +SL  CT C     D A   +P  +C P + +  +R    +
Sbjct:   379 TKLPHTTATTRTSTSSRTSISLSFCT-CSSDVLDTALLTNPHYSCKPVVSRTGSRTPQSA 437

Query:   345 -SDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPR 403
              S     ++C  FP     LC    G     EPR         R   G      ++EG R
Sbjct:   438 RSSAFRSLSCRRFPP---SLCL---GGSDVDEPRSRLIGGSYSRSGVGFRRSTSQVEGKR 491

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010311 "lateral root formation" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010366 "negative regulation of ethylene biosynthetic process" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|Q65XV2 XB3 "E3 ubiquitin-protein ligase XB3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 178 (67.7 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
 Identities = 51/129 (39%), Positives = 65/129 (50%)

Query:    81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 140
             D    ++FVN   D G T LH+AA  G   CVQ+LL+  A VSA+T  YG        GS
Sbjct:   144 DSWGFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFP------GS 197

Query:   141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMP 200
             T LH AA  GNL C + LL+ GA R+  +  G +P  VA          LL P+S   M 
Sbjct:   198 TSLHLAARSGNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPMV 257

Query:   201 RFHPSNYLS 209
                P  ++S
Sbjct:   258 WPSPLKFIS 266

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

TAIR|locus:2053205 XBAT31 "XB3 ortholog 1 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 75/231 (32%), Positives = 110/231 (47%)

Query:     3 ACRYGHWEVVQTLLLFRCNVTRADYLSG--RTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G  E++ +LLL R   T  D L+   +T L  AA+ G + C++ +       + F+
Sbjct:    53 AAANGQIEIL-SLLLER--FTNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFD 109

Query:    61 VMNTQI----EGDRGDGSSVKS--KCDQSA-------LSKFVNKAADGGITALHMAALNG 107
              +N +         G  + V++     QS+        ++FVN   D G T LH+AA   
Sbjct:   110 SVNRRTCLHYAAYYGHANCVQAILSAAQSSPVAVHWGYARFVNIRDDKGATPLHLAARQR 169

Query:   108 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 167
               +CV +LLD  + V A T  YG+       GSTPLH AA  G++ C + LL+ GA R+ 
Sbjct:   170 RPECVNVLLDSGSLVCASTSVYGSP------GSTPLHLAARSGSIDCVRKLLAWGADRLQ 223

Query:   168 LNCNGWLPLDVARMWGRHWL-EPLLAPSSDAVMPRFHPSNYLSLPLLSVLN 217
              + +G +P  VA M  +H     LL PSS    P   PS    L  +S LN
Sbjct:   224 RDASGRIPYVVA-MKHKHGACGALLNPSS--AEPLVWPS---PLKFISELN 268

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051049 "regulation of transport" evidence=RCA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 60/190 (31%), Positives = 92/190 (48%)

Query:     3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPFEV 61
             AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+  D  P+V    
Sbjct:   411 ACKKNHIRVMELLLKTGASIDAVTE-SGLTPLHVASFMGHLPIVKNLLQRDASPNVSNVK 469

Query:    62 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 121
             + T +      G +  +K      +K VN  A    T LH AA  G+ + V+LLL+ +AN
Sbjct:   470 VETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 528

Query:   122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 181
              +  T           AG TPLH AA  G+++    LL +GAS+  +   G+ PL VA  
Sbjct:   529 PNLATT----------AGHTPLHIAAREGHVETALALLEKGASQACMTKKGFTPLHVAAK 578

Query:   182 WGRHWLEPLL 191
             +G+  +  LL
Sbjct:   579 YGKVRVAELL 588

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 166 (63.5 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 58/190 (30%), Positives = 91/190 (47%)

Query:     3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPFEV 61
             AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+  +  P+V    
Sbjct:   377 ACKKNHIRVMELLLKMGASIDAVTE-SGLTPLHVASFMGHLPIVKSLLQREASPNVSNVK 435

Query:    62 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 121
             + T +      G +  +K      +K VN  A    T LH AA  G+ + V+LLL+ +AN
Sbjct:   436 VETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 494

Query:   122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 181
              +  T           AG TPLH AA  G+++    LL + AS+  +   G+ PL VA  
Sbjct:   495 PNLATT----------AGHTPLHIAAREGHVETALALLEKEASQTCMTKKGFTPLHVAAK 544

Query:   182 WGRHWLEPLL 191
             +G+  +  LL
Sbjct:   545 YGKVRMAELL 554

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-010724-11 ppp1r12c "protein phosphatase 1, regulatory subunit 12C" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 45/113 (39%), Positives = 59/113 (52%)

Query:    71 GDGSSVKSKCDQSALS---KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF 127
             GD    K+   +  L+     VN A   GITALH A ++G  + V  LL   ANV+ V  
Sbjct:    74 GDTEEAKAMLREVLLNGEDDVVNCANADGITALHQACIDGSMEMVDFLLSHGANVNQVD- 132

Query:   128 HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
                        G TPLH AA  GNL+  + LL  GAS  S+NC+G +PLD+A+
Sbjct:   133 ---------SEGWTPLHVAASCGNLEIAEFLLQHGASLCSVNCDGDVPLDIAK 176

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 58/190 (30%), Positives = 89/190 (46%)

Query:     3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPFEV 61
             AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+     P+V    
Sbjct:   372 ACKKNHIRVMELLLKTGASIDAVTE-SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK 430

Query:    62 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 121
             + T +      G +  +K      +K VN  A    T LH AA  G+ + V+LLL+ +AN
Sbjct:   431 VETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 489

Query:   122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 181
              +  T           AG TPLH AA  G ++    LL + AS+  +   G+ PL VA  
Sbjct:   490 PNLATT----------AGHTPLHIAAREGQVETALALLEKEASQACMTKKGFTPLHVAAK 539

Query:   182 WGRHWLEPLL 191
             +G+  +  LL
Sbjct:   540 YGKVRVAELL 549

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 58/190 (30%), Positives = 90/190 (47%)

Query:     3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPFEV 61
             AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+     P+V    
Sbjct:   378 ACKKNHVRVMELLLKTGASIDAVTE-SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK 436

Query:    62 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 121
             + T +      G +  +K      +K VN  A    T LH AA  G+ + V+LLL+ +AN
Sbjct:   437 VETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 495

Query:   122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 181
              +  T           AG TPLH AA  G+++    LL + AS+  +   G+ PL VA  
Sbjct:   496 PNLATT----------AGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 545

Query:   182 WGRHWLEPLL 191
             +G+  +  LL
Sbjct:   546 YGKVRVAELL 555

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 58/190 (30%), Positives = 89/190 (46%)

Query:     3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPFEV 61
             AC+  H  V++ LL    ++      SG T LH A+  GH+  ++ L+     P+V    
Sbjct:   382 ACKKNHIRVMELLLKTGASIDAVTE-SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK 440

Query:    62 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 121
             + T +      G +  +K      +K VN  A    T LH AA  G+ + V+LLL+ +AN
Sbjct:   441 VETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 499

Query:   122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 181
              +  T           AG TPLH AA  G ++    LL + AS+  +   G+ PL VA  
Sbjct:   500 PNLATT----------AGHTPLHIAAREGQVETALALLEKEASQACMTKKGFTPLHVAAK 549

Query:   182 WGRHWLEPLL 191
             +G+  +  LL
Sbjct:   550 YGKVRVAELL 559

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4FE45	XB33_ARATH	6, ., 3, ., 2, ., -	0.7081	0.9744	0.8187	yes	no
Q337A0	XB33_ORYSJ	6, ., 3, ., 2, ., -	0.6181	0.9953	0.825	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00007371001 SubName- Full=Chromosome chr16 scaffold_189, whole genome shotgun sequence; (518 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-05
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	6e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 92.4 bits (230), Expect = 1e-22
 Identities = 51/157 (32%), Positives = 67/157 (42%), Gaps = 44/157 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A   GH EVV+ LL    +V   D   GRT LH AA NGH+  ++L+             
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLL------------- 59

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                        ++   D       VN     G T LH+AA NG  D V+LLL   A+V
Sbjct: 60  -------------LEKGAD-------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADV 99

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 159
           +A              G TPLH AA  G+L+  ++LL
Sbjct: 100 NARDKD----------GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 92.1 bits (229), Expect = 1e-22
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 43/155 (27%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           GRT LH AA NGH+  ++L+                          +++  D       V
Sbjct: 7   GRTPLHLAASNGHLEVVKLL--------------------------LENGAD-------V 33

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           N   + G T LH+AA NG+ + V+LLL+  A+V+A              G+TPLH AA  
Sbjct: 34  NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD----------GNTPLHLAARN 83

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
           GNL   ++LL  GA   + + +G  PL +A   G 
Sbjct: 84  GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.3 bits (196), Expect = 6e-18
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           N   + G T LH+AA NG+ + V+LLL+  A+V+A              G TPLH AA  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND----------GRTPLHLAAKN 50

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           G+L+  ++LL +GA   + + +G  PL +A   G  
Sbjct: 51  GHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 36/125 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A + G+ E+V+ LL    +V   D     TALH AA NG++  ++L+           
Sbjct: 2   HLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLL----------- 47

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          ++   D       VN     G TALH+AA NG  + V+LLL+  A
Sbjct: 48  ---------------LEHGAD-------VNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Query: 121 NVSAV 125
           +++  
Sbjct: 86  DINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 45/130 (34%)

Query: 34  LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 93
           LH AA NG++  ++L++                  ++G   ++                 
Sbjct: 1   LHLAAKNGNLELVKLLL------------------EKGADVNLGDTD------------- 29

Query: 94  DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
               TALH+AA NG  + V+LLL+  A+V+A              G+T LH AA  GNL+
Sbjct: 30  ----TALHLAARNGNLEIVKLLLEHGADVNAKDKD----------GNTALHLAARNGNLE 75

Query: 154 CCQVLLSRGA 163
             ++LL  GA
Sbjct: 76  IVKLLLEHGA 85

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.8 bits (156), Expect = 7e-13
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 100 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 159
           LH+AA NG  + V+LLL+  A+V+             G   T LH AA  GNL+  ++LL
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL------------GDTDTALHLAARNGNLEIVKLLL 48

Query: 160 SRGASRMSLNCNGWLPLDVARMWGRHWL 187
             GA   + + +G   L +A   G   +
Sbjct: 49  EHGADVNAKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 34/116 (29%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A + GH E+V+ LL    +V   D   G T LH AA NG++  ++L++          
Sbjct: 45  HLAAKNGHLEIVKLLLEKGADVNARDK-DGNTPLHLAARNGNLDVVKLLL---------- 93

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                     G                 VN     G T LH+AA NG+ + V+LLL
Sbjct: 94  --------KHGAD---------------VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 56.0 bits (134), Expect = 6e-09
 Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 36/171 (21%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G  ++V+ LL    +V   D   G T LH AA+NG+     + VA  +      
Sbjct: 78  HSAASKGDDKIVKLLLASGADVNAKDAD-GDTPLHLAALNGNPPEGNIEVAKLL------ 130

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                               +  A     N   + G T LH AALNG  D V+LLL+  A
Sbjct: 131 -------------------LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 171
           + ++              G T L  AA  G ++  ++LL +G     L  N
Sbjct: 172 DPNSRNS----------YGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 55/225 (24%), Positives = 76/225 (33%), Gaps = 45/225 (20%)

Query: 6   YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 65
                    L L       A  L GR  LH AA  G  + ++L++A              
Sbjct: 49  PAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGAD---------- 98

Query: 66  IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG-----YFDCVQLLLDLHA 120
                                  VN     G T LH+AALNG       +  +LLL+  A
Sbjct: 99  -----------------------VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           ++           D  G   TPLH+AA  G+    ++LL  GA   S N  G   LD A 
Sbjct: 136 DLDVNN-----LRDEDGN--TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA 188

Query: 181 MWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL 225
             GR  L  LL      +         ++   +S  N+     L+
Sbjct: 189 KNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 98  TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
           TALH AA++G  + V+ LL+   +++               G+T LH AA  GNL+  ++
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTD----------EDGNTALHIAAENGNLEVLKL 52

Query: 158 LL 159
           LL
Sbjct: 53  LL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 1  MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 48
           +A   G  E+V+ LL    ++ R D   G TALH AA NG++  ++L
Sbjct: 6  HKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKL 52

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVT 126
           G T LH+AA NG+ + V+LLL+  A+V+A  
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 37/152 (24%)

Query: 8   HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR----CIRLVVADFVPSVPFEVMN 63
           + E+ + LL   C         G T LH A    +V      +  ++A F  S P E+ N
Sbjct: 65  NLELTELLLNLSCRGA-----VGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELAN 118

Query: 64  TQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS 123
            Q               + +            GITALH+AA    ++ V+LLL+  A+V 
Sbjct: 119 DQ------------YTSEFTP-----------GITALHLAAHRQNYEIVKLLLERGASVP 155

Query: 124 A----VTFHYGTSMDLIGAGSTPLHFAACGGN 151
           A      F     +D    G +PL+ AAC G+
Sbjct: 156 ARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
           L  +          +      G+TPLH AA  G L+  Q LL  G      + +G   LD
Sbjct: 1   LLEHGPIDLNATDGN------GNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Query: 178 VA 179
           +A
Sbjct: 55  LA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLN 169
           G+TPLH AA  G+L+  ++LL  GA   + +
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   D G   +H+A  + +FD ++LLL+  A  +    +          G +PLH AA 
Sbjct: 150 VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN----------GESPLHNAAE 199

Query: 149 GGNLKCCQVLLSRGASRMSLNCN-GWLPLDVARMWGRHWLEPLLAPSS------DAVMPR 201
            G+  C ++L+  G + +   C  G+ PL  A +  R  +E L+  +S      D   P 
Sbjct: 200 YGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPL 258

Query: 202 FHPSNY 207
            H  N 
Sbjct: 259 HHAINP 264

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 33/87 (37%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           GRTALH AA++G +  ++ ++   V                                  +
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD---------------------------------I 27

Query: 90  NKAADGGITALHMAALNGYFDCVQLLL 116
           N+  + G TALH+AA NG  + ++LLL
Sbjct: 28  NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSA 124
           G T LH+AA NG  + V+LLLD  A+++A
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSA 124
           G T LH+AA NG  + V+LLL+  A+++A
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 10/52 (19%)

Query: 95  GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
            G T LH+AA  G  + VQ LL    +++               G T L  A
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD----------GLTALDLA 56

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 139 GSTPLHFAACGGNLKCCQVLLSRGAS 164
           G TPLH AA  GNL+  ++LL +GA 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 84  ALSKFVNKAADGGITALHMAALNGY---FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 140
            L   ++     G T LH  +L         +  LL        +             G 
Sbjct: 70  ELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129

Query: 141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 172
           T LH AA   N +  ++LL RGA  +     G
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGA-SVPARACG 160

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 30/160 (18%)

Query: 7   GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 66
             + +V+ LL    NV       G   LH       +   +         +  +++   I
Sbjct: 119 NSYSIVEYLLDNGANVN-IKNSDGENLLHLY-----LESNK---------IDLKILKLLI 163

Query: 67  EGDRGDGSSVKSKCDQSALSKFV--NKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 124
             D+G   + K++ +   LS  V  N     G T LH A  N   + V+ LLDL AN + 
Sbjct: 164 --DKGVDINAKNRVN-YLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL 220

Query: 125 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
           V  +          G TPLH A    N +  ++LL+ G S
Sbjct: 221 VNKY----------GDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 89  VNKAADGGITALHMAALNGY-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
           VN     G T LH+   N    D ++LL+   A+V+A              G TPLH   
Sbjct: 76  VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK----------DKVGRTPLHVYL 125

Query: 148 CGGNLKCCQV--LLSRGASRMSLNCNGWLPLDV 178
            G N+    +  LL +GA   +L+  G  PL V
Sbjct: 126 SGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02946	446	ankyin-like protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.93
PHA02989	494	ankyrin repeat protein; Provisional	99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.91
KOG0508	615	consensus Ankyrin repeat protein [General function	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PHA02741	169	hypothetical protein; Provisional	99.87
PHA02730	672	ankyrin-like protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.87
PHA02792	631	ankyrin-like protein; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
PHA02736	154	Viral ankyrin protein; Provisional	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
PHA02741	169	hypothetical protein; Provisional	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.71
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.68
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.63
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.56
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.29
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.26
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.25
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.0
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.98
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.82
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.76
PF13606	30	Ank_3: Ankyrin repeat	98.7
PF13606	30	Ank_3: Ankyrin repeat	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.69
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.65
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.63
KOG0522	560	consensus Ankyrin repeat protein [General function	98.54
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.54
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.53
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.53
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.47
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.35
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.96
KOG2384	223	consensus Major histocompatibility complex protein	97.92
KOG0511	516	consensus Ankyrin repeat protein [General function	97.89
KOG2384	223	consensus Major histocompatibility complex protein	97.88
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.82
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.79
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.78
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	97.63
KOG2505	591	consensus Ankyrin repeat protein [General function	97.21
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.87
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	96.86
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.85
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.7
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.68
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	96.58
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.41
PHA02929	238	N1R/p28-like protein; Provisional	96.36
PF14634	44	zf-RING_5: zinc-RING finger domain	96.04
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	95.76
PHA02926	242	zinc finger-like protein; Provisional	95.63
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	95.56
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.44
KOG2505	591	consensus Ankyrin repeat protein [General function	95.28
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	95.15
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	95.03
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	94.83
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	94.68
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	94.42
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	94.09
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.91
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	93.79
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	93.16
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	93.11
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	92.42
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	91.85
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	91.76
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	91.5
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	90.57
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.27
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	89.38
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.08
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	87.99
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	87.09
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.33
COG5236	493	Uncharacterized conserved protein, contains RING Z	86.32
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	85.65
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	83.9
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	82.09
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	80.17

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-31  Score=233.08  Aligned_cols=188  Identities=29%  Similarity=0.324  Sum_probs=161.8

Q ss_pred             eccCCHHHHHHHHHcCC-CCcccCCCCCchHHHHHHHhCCHHHHHHHHhc----CCCCCCCCcchhhHhhhcCChhhHHh
Q 014068            4 CRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAAVNGHVRCIRLVVAD----FVPSVPFEVMNTQIEGDRGDGSSVKS   78 (431)
Q Consensus         4 a~~G~~evVk~LL~~ga-di~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~----~~~~~~~~~~~l~~a~~~~~~~~~~~   78 (431)
                      +......-|+.|++... .++.+++.+|+||||||+..||.++|.+|++.    ..+.+..+|+++|+++..++.+.++.
T Consensus        11 ~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~   90 (226)
T KOG4412|consen   11 CENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKE   90 (226)
T ss_pred             HhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHH
Confidence            44455667777887766 67777777889999999999999999998852    33456778889999999888888888


Q ss_pred             hhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHH
Q 014068           79 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  158 (431)
Q Consensus        79 ~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklL  158 (431)
                      ++...  ..++|.+++.|.|+||||+..|..+++++|+++|+.++.+|..          |.||||.|+..|+++++++|
T Consensus        91 Ll~r~--~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~----------~qtplHRAAavGklkvie~L  158 (226)
T KOG4412|consen   91 LLNRS--GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQ----------GQTPLHRAAAVGKLKVIEYL  158 (226)
T ss_pred             HhcCC--CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccc----------cCchhHHHHhccchhhHHHH
Confidence            87765  4569999999999999999999999999999999999999987          99999999999999999999


Q ss_pred             HHCCCCCcccCCCCCcHHHHHHHhCcHHH-HHHhcCCCCCCCCCCC
Q 014068          159 LSRGASRMSLNCNGWLPLDVARMWGRHWL-EPLLAPSSDAVMPRFH  203 (431)
Q Consensus       159 L~~GAdin~~d~~G~TpLh~Aa~~g~~~v-~~LL~~~a~~~~~~~~  203 (431)
                      +..|+.+|.+|+.|+||||.|...|+.++ +.|...+++.++.++.
T Consensus       159 i~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke  204 (226)
T KOG4412|consen  159 ISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKE  204 (226)
T ss_pred             HhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeecccc
Confidence            99999999999999999999999999888 5666778888777654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=260.10  Aligned_cols=221  Identities=21%  Similarity=0.206  Sum_probs=186.8

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC---CCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~---~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |.|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++|+..+   ..+.++++.|+..++...+.
T Consensus         7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~   85 (413)
T PHA02875          7 CDAILFGELDIARRLLDIGINPNFEIY-DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE   85 (413)
T ss_pred             HHHHHhCCHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence            468999999999999999999999887 89999999999999999999999887543   45778999999999999998


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++..+...  .+..+..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..|+.+++++
T Consensus        86 ~Ll~~~~~~--~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~----------g~tpLh~A~~~~~~~~v~~  153 (413)
T PHA02875         86 ELLDLGKFA--DDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD----------KFSPLHLAVMMGDIKGIEL  153 (413)
T ss_pred             HHHHcCCcc--cccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHH
Confidence            888765422  3445678999999999999999999999999999998866          9999999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCCCCc
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDAD  236 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~  236 (431)
                      |+++|++++.+|..|+||||+|+..|+.+++++| ..+++++.....+.       .+++++|...              
T Consensus       154 Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~-------~t~l~~A~~~--------------  212 (413)
T PHA02875        154 LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGC-------VAALCYAIEN--------------  212 (413)
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCC-------chHHHHHHHc--------------
Confidence            9999999999999999999999999999987655 45666655432211       2455555543              


Q ss_pred             hhhhhhccccchhccCCChHHHHHHHHHhhhcCCCC
Q 014068          237 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIP  272 (431)
Q Consensus       237 ~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~  272 (431)
                                       |+..+++.|++.|+++++.
T Consensus       213 -----------------~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        213 -----------------NKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             -----------------CCHHHHHHHHHCCcCcchH
Confidence                             4555788888888888764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.6e-30  Score=225.04  Aligned_cols=161  Identities=24%  Similarity=0.153  Sum_probs=137.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCC-----CCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHH
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFV-----PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA  103 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~-----~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~A  103 (431)
                      .+.++.+.++......-++.|++...     ..+..+.+++|+++..+..+++..++....  ..+|.+|+.||||||+|
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~n--v~~ddkDdaGWtPlhia   79 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPN--VKPDDKDDAGWTPLHIA   79 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCC--CCCCCccccCCchhhhh
Confidence            35677888888877777777775322     345588999999999999999998886443  34788999999999999


Q ss_pred             HHcCCHHHHHHHHHC-CCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHh
Q 014068          104 ALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW  182 (431)
Q Consensus       104 a~~g~~e~VklLL~~-Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~  182 (431)
                      +..|+.++|+.|+.. |+|+|..++.          |.|+||||+..|..+++++|+++|+.++.+|..|.||||-|+..
T Consensus        80 ~s~g~~evVk~Ll~r~~advna~tn~----------G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADVNATTNG----------GQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAV  149 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCcceecCC----------CcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhc
Confidence            999999999999998 9999999977          99999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhc-CCCCCCCCC
Q 014068          183 GRHWLEPLLA-PSSDAVMPR  201 (431)
Q Consensus       183 g~~~v~~LL~-~~a~~~~~~  201 (431)
                      |+..++++|. .++..+..+
T Consensus       150 Gklkvie~Li~~~a~~n~qD  169 (226)
T KOG4412|consen  150 GKLKVIEYLISQGAPLNTQD  169 (226)
T ss_pred             cchhhHHHHHhcCCCCCccc
Confidence            9999977665 455555543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8e-29  Score=255.77  Aligned_cols=266  Identities=16%  Similarity=0.065  Sum_probs=208.8

Q ss_pred             EeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC---CCCcchhhHhhhcCChhhHH
Q 014068            2 QACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~---~~~~~~l~~a~~~~~~~~~~   77 (431)
                      .|+..|+++.|+.|++. +..++..+. .|.||||+|+..|+.++|++|++.|+..+   ..+.++++.|+..+....++
T Consensus         7 ~ai~~gd~~~v~~ll~~~~~~~n~~~~-~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~   85 (434)
T PHA02874          7 MCIYSGDIEAIEKIIKNKGNCINISVD-ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIK   85 (434)
T ss_pred             HHHhcCCHHHHHHHHHcCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            47889999999999875 445666665 88999999999999999999998877543   45678899999998888888


Q ss_pred             hhhhhhh--------------------hhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCC
Q 014068           78 SKCDQSA--------------------LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG  137 (431)
Q Consensus        78 ~~~~~~~--------------------~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~  137 (431)
                      .++..+.                    ....++.++..|.||||+|+..|+.++|++|+++|++++..+..         
T Consensus        86 ~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~---------  156 (434)
T PHA02874         86 LLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN---------  156 (434)
T ss_pred             HHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCC---------
Confidence            7765432                    12346778889999999999999999999999999999998866         


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC-CCCCCCCCCCCCCCCchhhhhHH
Q 014068          138 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVL  216 (431)
Q Consensus       138 ~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~-~a~~~~~~~~~~~~~~~~l~t~l  216 (431)
                       |.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|.. +++.+.....        +.|++
T Consensus       157 -g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~--------g~TpL  227 (434)
T PHA02874        157 -GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN--------GFTPL  227 (434)
T ss_pred             -CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC--------CCCHH
Confidence             9999999999999999999999999999999999999999999999999877665 4544433322        23777


Q ss_pred             HHHHHcCCccccccCCCC--CchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccc
Q 014068          217 NVARECGLLSSTTSSSDD--ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  287 (431)
Q Consensus       217 ~~A~~~G~~~~~~a~~~~--~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~C  287 (431)
                      +.|...+...+.. ...+  ...-.....+|+..|+..-++..+++.|+..|++.+..+..+.+|.+.++-..
T Consensus       228 ~~A~~~~~~~i~~-Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~  299 (434)
T PHA02874        228 HNAIIHNRSAIEL-LINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYI  299 (434)
T ss_pred             HHHHHCChHHHHH-HHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhC
Confidence            8887765432211 1000  11111223467888887645777999999999999999998888887776544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.6e-29  Score=260.53  Aligned_cols=233  Identities=21%  Similarity=0.159  Sum_probs=186.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC-CCCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV-PFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+||..|+.++|++|+++|++++..|. .|+||||+|+..|+.+++++|++.+.... ..+.++++.++..+..+.++.+
T Consensus        42 h~A~~~g~~e~vk~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~L  120 (477)
T PHA02878         42 HQAVEARNLDVVKSLLTRGHNVNQPDH-RDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKII  120 (477)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHH
Confidence            789999999999999999999999997 99999999999999999999998654322 3455667777777666655544


Q ss_pred             hhhh------------------------------hhhhhhcccCCC-CchHHHHHHHcCCHHHHHHHHHCCCCCCccccc
Q 014068           80 CDQS------------------------------ALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFH  128 (431)
Q Consensus        80 ~~~~------------------------------~~~~~in~~d~~-G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~  128 (431)
                      +...                              ..+..++.++.. |.||||+|+..|+.+++++|+++|++++..+..
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~  200 (477)
T PHA02878        121 LTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKT  200 (477)
T ss_pred             HhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCC
Confidence            4320                              112346777877 999999999999999999999999999998876


Q ss_pred             CCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHh-CcHHHHHHh-cCCCCCCCCCCCCCC
Q 014068          129 YGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW-GRHWLEPLL-APSSDAVMPRFHPSN  206 (431)
Q Consensus       129 ~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~-g~~~v~~LL-~~~a~~~~~~~~~~~  206 (431)
                                |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.. ++.+++++| ..+++++.....   
T Consensus       201 ----------g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~---  267 (477)
T PHA02878        201 ----------NNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYI---  267 (477)
T ss_pred             ----------CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCC---
Confidence                      99999999999999999999999999999999999999999986 678887655 456666554211   


Q ss_pred             CCchhhhhHHHHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCC
Q 014068          207 YLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPC  284 (431)
Q Consensus       207 ~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~C  284 (431)
                          .+.|+|++|.                                 ++..+++.|++.|++++..+..+.+|.+.++
T Consensus       268 ----~g~TpLh~A~---------------------------------~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        268 ----LGLTALHSSI---------------------------------KSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             ----CCCCHHHHHc---------------------------------cCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence                1225555551                                 2234678899999999888888888876664

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=253.89  Aligned_cols=179  Identities=15%  Similarity=0.109  Sum_probs=95.1

Q ss_pred             ccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCC--hhhHHhh
Q 014068            5 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGD--GSSVKSK   79 (431)
Q Consensus         5 ~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~--~~~~~~~   79 (431)
                      ..++.++|++|+++|+++|.+|. .|+||||+|+..|+.++|++|+++|+.   .+..+.+++|+++..+.  .+.+..+
T Consensus        48 ~~~~~~iv~~Ll~~Gadvn~~d~-~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lL  126 (446)
T PHA02946         48 KGLDERFVEELLHRGYSPNETDD-DGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLL  126 (446)
T ss_pred             cCCCHHHHHHHHHCcCCCCccCC-CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHH
Confidence            34456777777777777777776 777777777777777777777776654   34556677776655433  2333333


Q ss_pred             hhhhhhhhhhcc-cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC--CHHHHH
Q 014068           80 CDQSALSKFVNK-AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG--NLKCCQ  156 (431)
Q Consensus        80 ~~~~~~~~~in~-~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g--~~eivk  156 (431)
                      +..+   ..++. .|..|.|||| |+..|+.+++++|++.|++++..|..          |+||||+|+..+  +.++++
T Consensus       127 l~~G---adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~----------G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        127 VQYG---AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKF----------GKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             HHcC---CCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCC----------CCCHHHHHHHhcCCCHHHHH
Confidence            3222   22332 3445555554 34445555555555555555555543          444444443322  234444


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhC--cHHHHHHhcCCCCCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWG--RHWLEPLLAPSSDAV  198 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g--~~~v~~LL~~~a~~~  198 (431)
                      +|+++|++++.+|.+|+||||+|+..+  +.+++++|..+++++
T Consensus       193 ~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin  236 (446)
T PHA02946        193 WMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVN  236 (446)
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCC
Confidence            444444444444444444444444433  334444444443333

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.9e-28  Score=236.87  Aligned_cols=176  Identities=17%  Similarity=0.063  Sum_probs=124.0

Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC-CCCcchhhHhhhcCChhhHHhhhhhhh
Q 014068            6 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV-PFEVMNTQIEGDRGDGSSVKSKCDQSA   84 (431)
Q Consensus         6 ~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~~   84 (431)
                      .++.+++++|+++|++  ..|. +|+||||+|+..|+.+++++|++.++..+ ..+.+++++|+..+..+.+..++..+ 
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~-~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d~~TpLh~Aa~~g~~eiV~lLL~~G-   84 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADV-HGHSALYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG-   84 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCC-CCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCCCCCHHHHHHHCCCHHHHHHHHHCC-
Confidence            4778999999999885  4665 89999999999999999999998876432 23566777777777776666665443 


Q ss_pred             hhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCC-CcHHHHHHhcCCHHHHHHHHHCCC
Q 014068           85 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG-STPLHFAACGGNLKCCQVLLSRGA  163 (431)
Q Consensus        85 ~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G-~TpLh~Aa~~g~~eivklLL~~GA  163 (431)
                        ..++.+|..|.||||+|+..|+.++|++|+++|++++..+..          | .||||+|+..|+.++|++|+++|+
T Consensus        85 --advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~----------g~~TpL~~Aa~~g~~eivk~LL~~~~  152 (284)
T PHA02791         85 --MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT----------GWKTSFYHAVMLNDVSIVSYFLSEIP  152 (284)
T ss_pred             --CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCC----------CCcHHHHHHHHcCCHHHHHHHHhcCC
Confidence              245666777777777777777777777777777777666544          4 467777777777777777777665


Q ss_pred             CCcccC-CCCCcHHHHHHHhCcHHHHHHhc-CCCCCCC
Q 014068          164 SRMSLN-CNGWLPLDVARMWGRHWLEPLLA-PSSDAVM  199 (431)
Q Consensus       164 din~~d-~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~  199 (431)
                      +.  .| ..|+||||+|+..|+.+++++|+ .+++++.
T Consensus       153 ~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~  188 (284)
T PHA02791        153 ST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT  188 (284)
T ss_pred             cc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            43  22 24677777777777777655443 3444443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=251.89  Aligned_cols=246  Identities=20%  Similarity=0.197  Sum_probs=198.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC-------------------------
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP-------------------------   55 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~-------------------------   55 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|+++++.                         
T Consensus        40 ~~A~~~g~~~iv~~Ll~~Ga~~n~~~~-~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n  118 (434)
T PHA02874         40 IDAIRSGDAKIVELFIKHGADINHINT-KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVN  118 (434)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCC
Confidence            579999999999999999999999887 899999999999999999999987653                         


Q ss_pred             -CCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccc
Q 014068           56 -SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD  134 (431)
Q Consensus        56 -~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~  134 (431)
                       .+..+.+++|.|+..+..+.+..++..+   ..++.+|..|.||||+|+..|+.+++++|+++|++++..+..      
T Consensus       119 ~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g---ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~------  189 (434)
T PHA02874        119 IKDAELKTFLHYAIKKGDLESIKMLFEYG---ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNN------  189 (434)
T ss_pred             CCCCCCccHHHHHHHCCCHHHHHHHHhCC---CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCC------
Confidence             3456889999999999999998887654   357889999999999999999999999999999999998866      


Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCCCCCCCCCCCCCCchhhhh
Q 014068          135 LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLS  214 (431)
Q Consensus       135 ~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~~~~~~~~~~~~~~~l~t  214 (431)
                          |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..++. ++.+|..+++++..+..+        .|
T Consensus       190 ----g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~-~i~~Ll~~~~in~~d~~G--------~T  256 (434)
T PHA02874        190 ----GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS-AIELLINNASINDQDIDG--------ST  256 (434)
T ss_pred             ----CCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH-HHHHHHcCCCCCCcCCCC--------CC
Confidence                99999999999999999999999999999999999999999998764 555666777776654443        37


Q ss_pred             HHHHHHHcCC-cccccc---CCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcC
Q 014068          215 VLNVARECGL-LSSTTS---SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTN  269 (431)
Q Consensus       215 ~l~~A~~~G~-~~~~~a---~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~  269 (431)
                      ++++|...+. .+++.-   ...+......-..++...|+....+...++.++..+...
T Consensus       257 pLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~  315 (434)
T PHA02874        257 PLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLI  315 (434)
T ss_pred             HHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCch
Confidence            8888887652 221110   111111111122467777877644666788888877654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.5e-28  Score=252.11  Aligned_cols=247  Identities=17%  Similarity=0.112  Sum_probs=183.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHH-----HHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhh--hc
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF-----AAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEG--DR   70 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~-----Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~--~~   70 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+     |+..|+.+++++|+++|+..   +..+.++++.|+  ..
T Consensus        40 ~~A~~~~~~~ivk~Ll~~g~~~~~~~~-~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~  118 (480)
T PHA03100         40 YLAKEARNIDVVKILLDNGADINSSTK-NNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKS  118 (480)
T ss_pred             hhhhccCCHHHHHHHHHcCCCCCCccc-cCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhccc
Confidence            678899999999999999999888876 88899999     99999999999999877653   445678888888  78


Q ss_pred             CChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcC--CHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHh
Q 014068           71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  148 (431)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g--~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~  148 (431)
                      +..+.++.++..+   ..++..+..|.||||+|+..|  +.+++++|+++|++++..+..          |.||||+|+.
T Consensus       119 ~~~~iv~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~----------g~tpL~~A~~  185 (480)
T PHA03100        119 NSYSIVEYLLDNG---ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRY----------GYTPLHIAVE  185 (480)
T ss_pred             ChHHHHHHHHHcC---CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCC----------CCCHHHHHHH
Confidence            8888877777654   346777888888888888888  888888888888888887765          8888888888


Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCC------CcHHHHHHHhCc--HHHHHHhcC-CCCCCCCCCCCCCCCchhhhhHHHHH
Q 014068          149 GGNLKCCQVLLSRGASRMSLNCNG------WLPLDVARMWGR--HWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVLNVA  219 (431)
Q Consensus       149 ~g~~eivklLL~~GAdin~~d~~G------~TpLh~Aa~~g~--~~v~~LL~~-~a~~~~~~~~~~~~~~~~l~t~l~~A  219 (431)
                      .|+.+++++|+++|++++..+..|      .||||+|+..|+  .+++++|.. +++++..+..+.        |++++|
T Consensus       186 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~--------TpL~~A  257 (480)
T PHA03100        186 KGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGF--------TPLHYA  257 (480)
T ss_pred             hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCC--------CHHHHH
Confidence            888888888888888888888888      888888888888  777665554 466555543322        677777


Q ss_pred             HHcCCccccccC---CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCC
Q 014068          220 RECGLLSSTTSS---SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNN  270 (431)
Q Consensus       220 ~~~G~~~~~~a~---~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n  270 (431)
                      ...|..+++...   ..+......-..++...|+.. ++...++.+++.|++.+
T Consensus       258 ~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~-~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        258 VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILN-NNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHh-CCHHHHHHHHhcCCCHH
Confidence            777655443311   111111122223556666666 66677777777777654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.2e-27  Score=232.67  Aligned_cols=186  Identities=15%  Similarity=0.023  Sum_probs=161.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..   +|+||||+|+..|+.+++++|++.++.   .+..+.+++++|+..+..+.++
T Consensus        35 h~Aa~~g~~eiv~~Ll~~ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk  111 (284)
T PHA02791         35 YYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVK  111 (284)
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            6899999999999999999998875   468999999999999999999987765   4567889999999999999999


Q ss_pred             hhhhhhhhhhhhcccCCCCc-hHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGI-TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~-TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      .++..+.   .++.++..|+ ||||+|+..|+.++|++|++++++..  +..         .|.||||+|+..|+.++++
T Consensus       112 ~Ll~~ga---din~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~---------~g~TpLh~Aa~~g~~eiv~  177 (284)
T PHA02791        112 LFVKKNW---RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLA---------ILLSCIHITIKNGHVDMMI  177 (284)
T ss_pred             HHHHCCC---CcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--ccc---------cCccHHHHHHHcCCHHHHH
Confidence            8876643   4677888875 99999999999999999999876542  211         2899999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCcH-HHHHHHhCcHHHHHHh-cCCCCCCCCCCC
Q 014068          157 VLLSRGASRMSLNCNGWLP-LDVARMWGRHWLEPLL-APSSDAVMPRFH  203 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~Tp-Lh~Aa~~g~~~v~~LL-~~~a~~~~~~~~  203 (431)
                      +||++||+++.+|..|.|| ||+|+..|+.+++++| ..+++++..+..
T Consensus       178 lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~  226 (284)
T PHA02791        178 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLE  226 (284)
T ss_pred             HHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCccc
Confidence            9999999999999999987 9999999999997655 567777776654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.1e-28  Score=250.15  Aligned_cols=271  Identities=17%  Similarity=0.065  Sum_probs=219.3

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhC---CHHHHHHHHhcCCCCC---CCCcchhhHhhhcCC-hh
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG---HVRCIRLVVADFVPSV---PFEVMNTQIEGDRGD-GS   74 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G---~~eiv~~LL~~~~~~~---~~~~~~l~~a~~~~~-~~   74 (431)
                      .|+..+++++|++|+++|++++..+. .|.||||+|+..|   +.+++++|++.|++.+   ..+.+++|.++..+. ..
T Consensus        20 ~~~~~~~~~~v~~Ll~~ga~vn~~~~-~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~   98 (471)
T PHA03095         20 LNASNVTVEEVRRLLAAGADVNFRGE-YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLD   98 (471)
T ss_pred             HcCCCCCHHHHHHHHHcCCCcccCCC-CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHH
Confidence            46788999999999999999999987 9999999999998   9999999999887654   468899999999994 77


Q ss_pred             hHHhhhhhhhhhhhhcccCCCCchHHHHHH--HcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC--
Q 014068           75 SVKSKCDQSALSKFVNKAADGGITALHMAA--LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG--  150 (431)
Q Consensus        75 ~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa--~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g--  150 (431)
                      .+..++..+   ..++.+|..|.||||+|+  ..++.+++++|+++|++++..+..          |.||||+|+..+  
T Consensus        99 iv~lLl~~g---a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~----------g~tpL~~a~~~~~~  165 (471)
T PHA03095         99 VIKLLIKAG---ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLY----------GMTPLAVLLKSRNA  165 (471)
T ss_pred             HHHHHHHcC---CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCC
Confidence            777776654   358999999999999999  567899999999999999999876          999999998866  


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHh--CcHHHH-HHhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccc
Q 014068          151 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMW--GRHWLE-PLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS  227 (431)
Q Consensus       151 ~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~--g~~~v~-~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~  227 (431)
                      +.+++++|+++|++++..|..|+||||+|+..  ++.+++ .||..+++++..+..+.        |++|+|...|....
T Consensus       166 ~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~--------tpLh~Aa~~~~~~~  237 (471)
T PHA03095        166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGN--------TPLHSMATGSSCKR  237 (471)
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCC--------CHHHHHHhcCCchH
Confidence            68999999999999999999999999999986  456665 56667787776655443        78889888775321


Q ss_pred             --c---ccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccce
Q 014068          228 --T---TSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  295 (431)
Q Consensus       228 --~---~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~  295 (431)
                        +   .....+.+....-..+|+..|+.. |+..+++.|+..|++++..+..+.+|.+.++-.....|+.+.
T Consensus       238 ~~v~~ll~~g~din~~d~~g~TpLh~A~~~-~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        238 SLVLPLLIAGISINARNRYGQTPLHYAAVF-NNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHH
Confidence              0   001111111112234788888888 888899999999999999999888998887777666666553

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=9.7e-28  Score=261.02  Aligned_cols=263  Identities=19%  Similarity=0.160  Sum_probs=171.4

Q ss_pred             eeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC---CCCcchhhHhhhcCChhhHHhh
Q 014068            3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~---~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+..|+.+++++|+++|++++.+|. .|+||||+|+..|+.++|++|++.|+..+   ..+.++++.++..++...++.+
T Consensus       152 ~i~~~~~~i~k~Ll~~Gadvn~~d~-~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~L  230 (682)
T PHA02876        152 RIQQDELLIAEMLLEGGADVNAKDI-YCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAI  230 (682)
T ss_pred             HHHCCcHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            5678999999999999999999997 99999999999999999999999887543   4577888998888887777665


Q ss_pred             hhhhh--------------------------hhhhhcccCCCCchHHHHHHHcCCH-HHHHHHHHCCCCCCcccccCCCc
Q 014068           80 CDQSA--------------------------LSKFVNKAADGGITALHMAALNGYF-DCVQLLLDLHANVSAVTFHYGTS  132 (431)
Q Consensus        80 ~~~~~--------------------------~~~~in~~d~~G~TpLh~Aa~~g~~-e~VklLL~~Gadvn~~d~~~~~~  132 (431)
                      +....                          ....++..|..|.||||+|+..|+. +++++|++.|++++..+..    
T Consensus       231 l~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~----  306 (682)
T PHA02876        231 IDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIK----  306 (682)
T ss_pred             HhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCC----
Confidence            43211                          1123566777889999999988886 5888888999998888866    


Q ss_pred             cccCCCCCcHHHHHHhcC-CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhC-cHHHH-HHhcCCCCCCCCCCCCCCCCc
Q 014068          133 MDLIGAGSTPLHFAACGG-NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG-RHWLE-PLLAPSSDAVMPRFHPSNYLS  209 (431)
Q Consensus       133 ~~~~~~G~TpLh~Aa~~g-~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g-~~~v~-~LL~~~a~~~~~~~~~~~~~~  209 (431)
                            |.||||+|+..| +.+++++|+..|++++..|..|+||||+|+..+ +.+++ .|+..+++++..+..+.    
T Consensus       307 ------g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~----  376 (682)
T PHA02876        307 ------GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDK----  376 (682)
T ss_pred             ------CCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCC----
Confidence                  777777777766 466667777667666666666666666666643 34443 34444555554433322    


Q ss_pred             hhhhhHHHHHHHcCCccccccCC---CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCC
Q 014068          210 LPLLSVLNVARECGLLSSTTSSS---DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPC  284 (431)
Q Consensus       210 ~~l~t~l~~A~~~G~~~~~~a~~---~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~C  284 (431)
                          |+|++|...|..+++....   .+......-..+++..|+...++..++++|++.|++.+..+..+.+|.+.++
T Consensus       377 ----TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa  450 (682)
T PHA02876        377 ----TPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYAC  450 (682)
T ss_pred             ----CHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHH
Confidence                5566666555444322100   0000000011234444444333334455555555555555555555555444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.3e-27  Score=256.81  Aligned_cols=262  Identities=18%  Similarity=0.059  Sum_probs=206.2

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC-------------------------
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP-------------------------   55 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~-------------------------   55 (431)
                      |+||..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                         
T Consensus       183 h~Aa~~G~~~iv~~LL~~Gad~n~~~~-~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~  261 (682)
T PHA02876        183 HYAAERGNAKMVNLLLSYGADVNIIAL-DDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYD  261 (682)
T ss_pred             HHHHHCCCHHHHHHHHHCCCCcCccCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHH
Confidence            689999999999999999999999987 999999999999999999988764332                         


Q ss_pred             -------CCCCCcchhhHhhhcCChh-hHHhhhhhhhhhhhhcccCCCCchHHHHHHHcC-CHHHHHHHHHCCCCCCccc
Q 014068           56 -------SVPFEVMNTQIEGDRGDGS-SVKSKCDQSALSKFVNKAADGGITALHMAALNG-YFDCVQLLLDLHANVSAVT  126 (431)
Q Consensus        56 -------~~~~~~~~l~~a~~~~~~~-~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g-~~e~VklLL~~Gadvn~~d  126 (431)
                             .+..+.+++|.|+..+... .+..++..   ...++.+|..|.||||+|+..| ..+++++|+..|++++..+
T Consensus       262 ~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~---gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d  338 (682)
T PHA02876        262 AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER---GADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAAD  338 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcc
Confidence                   2345789999999888764 34444333   2357889999999999999999 5999999999999999998


Q ss_pred             ccCCCccccCCCCCcHHHHHHhc-CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCC
Q 014068          127 FHYGTSMDLIGAGSTPLHFAACG-GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHP  204 (431)
Q Consensus       127 ~~~~~~~~~~~~G~TpLh~Aa~~-g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~  204 (431)
                      ..          |.||||+|+.. ++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|. .+++++.....+
T Consensus       339 ~~----------g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g  408 (682)
T PHA02876        339 RL----------YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKI  408 (682)
T ss_pred             cC----------CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Confidence            76          99999999985 5789999999999999999999999999999999999876554 566665544332


Q ss_pred             CCCCchhhhhHHHHHHHcCCccc----cccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCC
Q 014068          205 SNYLSLPLLSVLNVARECGLLSS----TTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPG  280 (431)
Q Consensus       205 ~~~~~~~l~t~l~~A~~~G~~~~----~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~  280 (431)
                      .        |++++|...+....    ......+.+.-.....+|+..|+...++..+++.|++.|++++..+..+.+|.
T Consensus       409 ~--------T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl  480 (682)
T PHA02876        409 G--------TALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPL  480 (682)
T ss_pred             C--------chHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            2        67788776543211    11011111222233357888998863567799999999999999998888887


Q ss_pred             CCCC
Q 014068          281 SIPC  284 (431)
Q Consensus       281 ~~~C  284 (431)
                      ..+.
T Consensus       481 ~~a~  484 (682)
T PHA02876        481 LIAL  484 (682)
T ss_pred             HHHH
Confidence            6553

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.4e-27  Score=243.42  Aligned_cols=246  Identities=17%  Similarity=0.104  Sum_probs=188.7

Q ss_pred             CEeeccC---CHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhC-CHHHHHHHHhcCCCC---CCCCcchhhHhh--hcC
Q 014068            1 MQACRYG---HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG-HVRCIRLVVADFVPS---VPFEVMNTQIEG--DRG   71 (431)
Q Consensus         1 H~Aa~~G---~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G-~~eiv~~LL~~~~~~---~~~~~~~l~~a~--~~~   71 (431)
                      |+|+..|   +.+++++|+++|++++..+. .|.||||+|+..| +.+++++|+++|+..   +..+.+++|.++  ...
T Consensus        52 h~a~~~~~~~~~~iv~~Ll~~Gadin~~~~-~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~  130 (471)
T PHA03095         52 HLYLHYSSEKVKDIVRLLLEAGADVNAPER-CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNI  130 (471)
T ss_pred             HHHHHhcCCChHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcC
Confidence            5677777   99999999999999999998 9999999999999 599999999988754   456789999998  444


Q ss_pred             ChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcC--CHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhc
Q 014068           72 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        72 ~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g--~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                      ....+..++..+   ..++.+|..|.||||+|+..+  +.+++++|+++|++++..+..          |.||||+|+..
T Consensus       131 ~~~iv~~Ll~~g---ad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~----------g~t~Lh~~~~~  197 (471)
T PHA03095        131 NPKVIRLLLRKG---ADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDR----------FRSLLHHHLQS  197 (471)
T ss_pred             CHHHHHHHHHcC---CCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHH
Confidence            566777666553   357888999999999998876  689999999999999988655          88888888764


Q ss_pred             --CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcH---HHHHHhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCC
Q 014068          150 --GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH---WLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGL  224 (431)
Q Consensus       150 --g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~---~v~~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~  224 (431)
                        ++.+++++|+++|++++.+|..|+||||+|+..|+.   .+..++..+++++..+..+.        |+|++|...|.
T Consensus       198 ~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~--------TpLh~A~~~~~  269 (471)
T PHA03095        198 FKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQ--------TPLHYAAVFNN  269 (471)
T ss_pred             CCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCC--------CHHHHHHHcCC
Confidence              678888888888888888888888888888888863   33456677777766654333        77888887776


Q ss_pred             ccccccC---CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcC
Q 014068          225 LSSTTSS---SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTN  269 (431)
Q Consensus       225 ~~~~~a~---~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~  269 (431)
                      .+++...   ..+......-..++...|+.. ||..+++.++..+++.
T Consensus       270 ~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~-~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        270 PRACRRLIALGADINAVSSDGNTPLSLMVRN-NNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHh-CCHHHHHHHHHhCCCH
Confidence            5444321   111111112224667777777 7878888888887665

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.4e-27  Score=245.32  Aligned_cols=205  Identities=22%  Similarity=0.207  Sum_probs=181.1

Q ss_pred             eeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHH--HhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcC--Chhh
Q 014068            3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA--VNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRG--DGSS   75 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa--~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~--~~~~   75 (431)
                      |+..|+.+++++|+++|++++..+. .|.||||+|+  ..|+.+++++|++.++..   +..+.++++.++..+  ....
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~-~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~i  158 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDN-NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKI  158 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCC-CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHH
Confidence            8999999999999999999998887 9999999999  999999999999988754   566889999999999  8888


Q ss_pred             HHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCC------CcHHHHHHhc
Q 014068           76 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG------STPLHFAACG  149 (431)
Q Consensus        76 ~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G------~TpLh~Aa~~  149 (431)
                      +..++..+.   .++.++..|.||||+|+..|+.+++++|+++|++++..+..          |      .||||+|+..
T Consensus       159 v~~Ll~~g~---din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~----------~~~~~~~~t~l~~a~~~  225 (480)
T PHA03100        159 LKLLIDKGV---DINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIE----------TLLFTIFETPLHIAACY  225 (480)
T ss_pred             HHHHHHCCC---CcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCC----------CCcHHHHHhHHHHHHHh
Confidence            888776643   47888889999999999999999999999999999988865          6      8999999999


Q ss_pred             CC--HHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcc
Q 014068          150 GN--LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLS  226 (431)
Q Consensus       150 g~--~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~  226 (431)
                      |+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++| ..+++++..+..+.        |++++|...+..+
T Consensus       226 ~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~--------tpl~~A~~~~~~~  297 (480)
T PHA03100        226 NEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGD--------TPLHIAILNNNKE  297 (480)
T ss_pred             CcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC--------cHHHHHHHhCCHH
Confidence            99  9999999999999999999999999999999999987655 55676666554433        7889998888766


Q ss_pred             ccc
Q 014068          227 STT  229 (431)
Q Consensus       227 ~~~  229 (431)
                      ++.
T Consensus       298 iv~  300 (480)
T PHA03100        298 IFK  300 (480)
T ss_pred             HHH
Confidence            554

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=1.9e-27  Score=242.44  Aligned_cols=199  Identities=27%  Similarity=0.267  Sum_probs=177.5

Q ss_pred             EeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCC----cchhhHhhhcCChhhH
Q 014068            2 QACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE----VMNTQIEGDRGDGSSV   76 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~----~~~l~~a~~~~~~~~~   76 (431)
                      .|+++|+++.|+.|++. |.+++..|. +|.|+|||||.+++.+++++|++++++.+..+    .+++|.|+..|+..++
T Consensus        50 ~A~q~G~l~~v~~lve~~g~~v~~~D~-~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv  128 (600)
T KOG0509|consen   50 KATQYGELETVKELVESEGESVNNPDR-EGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVV  128 (600)
T ss_pred             hHhhcchHHHHHHHHhhcCcCCCCCCc-CCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHH
Confidence            58999999999999998 999999998 99999999999999999999999999877654    6899999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      ..++.++.   +++.+|.+|.||||+||..|+.-.|-+||.+|++++.+|.+          |+||||+|+..|+...+.
T Consensus       129 ~lLlqhGA---dpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~----------grTpLmwAaykg~~~~v~  195 (600)
T KOG0509|consen  129 DLLLQHGA---DPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNN----------GRTPLMWAAYKGFALFVR  195 (600)
T ss_pred             HHHHHcCC---CCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCC----------CCCHHHHHHHhcccHHHH
Confidence            99988865   57889999999999999999999999999999999999987          999999999999998899


Q ss_pred             HHHHCCCCCcccC-CCCCcHHHHHHHhCcHHHHHHhcCC-CCCCCCCCCCCCCCchhhhhHHHHHHHc
Q 014068          157 VLLSRGASRMSLN-CNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLNVAREC  222 (431)
Q Consensus       157 lLL~~GAdin~~d-~~G~TpLh~Aa~~g~~~v~~LL~~~-a~~~~~~~~~~~~~~~~l~t~l~~A~~~  222 (431)
                      .||+.|++++..| ..|.||||+|+..|+..++.+|.++ ++.+..+.++        .+++++|.+.
T Consensus       196 ~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g--------~tp~~LA~~~  255 (600)
T KOG0509|consen  196 RLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNG--------KTPFDLAQER  255 (600)
T ss_pred             HHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCC--------CCHHHHHHHh
Confidence            9999999999997 9999999999999999887766665 4444444333        3677777666

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=3.5e-27  Score=244.65  Aligned_cols=269  Identities=21%  Similarity=0.176  Sum_probs=210.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC---CCCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV---PSVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~---~~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|..++++.|+++|+|+|..|. .|.||||+|+..++.|..+.|+..++   ..+.++..++|.++..+..+...
T Consensus       126 h~A~~~~~~s~L~~Ll~~~~dvnl~de-~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mE  204 (929)
T KOG0510|consen  126 HLAADSGNYSCLKLLLDYGADVNLEDE-NGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECME  204 (929)
T ss_pred             hhccccchHHHHHHHHHhcCCcccccc-CCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhh
Confidence            889999999999999999999999997 99999999999999998899998666   45667778899999999999988


Q ss_pred             hhhhhhh--hhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccc-----ccCCCccccCCCCCcHHHHHHhcC
Q 014068           78 SKCDQSA--LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT-----FHYGTSMDLIGAGSTPLHFAACGG  150 (431)
Q Consensus        78 ~~~~~~~--~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d-----~~~~~~~~~~~~G~TpLh~Aa~~g  150 (431)
                      ..+.+..  ....+|.-+..|.||||.|+..|++++++.+|++|+.+..+.     ..+..-.+.+..|.||||+|+..|
T Consensus       205 i~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G  284 (929)
T KOG0510|consen  205 IFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQG  284 (929)
T ss_pred             hhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcC
Confidence            8876322  234588999999999999999999999999999987654322     111111222356999999999999


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccccc
Q 014068          151 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTS  230 (431)
Q Consensus       151 ~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a  230 (431)
                      +.+.|+.|+..|++++.+++++.||||.|+.+|+.+.++-|++..+.-+.     +.....++|++|+|...|+..++.-
T Consensus       285 ~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rll-----ne~D~~g~tpLHlaa~~gH~~v~ql  359 (929)
T KOG0510|consen  285 GPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLL-----NESDLHGMTPLHLAAKSGHDRVVQL  359 (929)
T ss_pred             ChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcccc-----ccccccCCCchhhhhhcCHHHHHHH
Confidence            99999999999999999999999999999999999886555553332221     1223346799999999988766542


Q ss_pred             CCCCCch-------hhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCC
Q 014068          231 SSDDADT-------CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVG  277 (431)
Q Consensus       231 ~~~~~~~-------C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~  277 (431)
                      ..+. +.       -..=-.+++..|+.. |+..|++.|+..|++.-..+..+.
T Consensus       360 Ll~~-GA~~~~~~e~D~dg~TaLH~Aa~~-g~~~av~~Li~~Ga~I~~~n~~g~  411 (929)
T KOG0510|consen  360 LLNK-GALFLNMSEADSDGNTALHLAAKY-GNTSAVQKLISHGADIGVKNKKGK  411 (929)
T ss_pred             HHhc-ChhhhcccccccCCchhhhHHHHh-ccHHHHHHHHHcCCceeecccccc
Confidence            1110 00       011113678889999 999999999999999854444333

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=1.4e-26  Score=239.39  Aligned_cols=272  Identities=17%  Similarity=0.053  Sum_probs=210.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhC--CHHHHHHHHhcCCCCC----CCCcchhhHhhhcCChh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSV----PFEVMNTQIEGDRGDGS   74 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G--~~eiv~~LL~~~~~~~----~~~~~~l~~a~~~~~~~   74 (431)
                      |+|+..|+.++|++||++|++++.+|. .|+||||+|+..+  ..+++++|++.++..+    ..+.++++ ++..+...
T Consensus        77 h~Aa~~g~~eiv~lLL~~GAdin~~d~-~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~  154 (446)
T PHA02946         77 HIASKINNNRIVAMLLTHGADPNACDK-QHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSER  154 (446)
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChH
Confidence            789999999999999999999999997 9999999999876  4899999999888653    45777886 55567777


Q ss_pred             hHHhhhhhhhhhhhhcccCCCCchHHHHHHHcC--CHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC--
Q 014068           75 SVKSKCDQSALSKFVNKAADGGITALHMAALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG--  150 (431)
Q Consensus        75 ~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g--~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g--  150 (431)
                      .+..++..   ...++.+|..|.||||+|+..+  +.+++++|+++|++++..|..          |.||||+|+..|  
T Consensus       155 vv~~Ll~~---gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~----------G~TpLH~Aa~~~~~  221 (446)
T PHA02946        155 VFKKIMSI---GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD----------GNTPLHIVCSKTVK  221 (446)
T ss_pred             HHHHHHhc---cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCC
Confidence            77766654   3458899999999999998755  479999999999999999976          999999999976  


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCc-HHHHHHhcCCCCCCC-CC-----CCCC--------CCCchhhhhH
Q 014068          151 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSDAVM-PR-----FHPS--------NYLSLPLLSV  215 (431)
Q Consensus       151 ~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~-~~v~~LL~~~a~~~~-~~-----~~~~--------~~~~~~l~t~  215 (431)
                      +.+++++|++ |+++|.+|..|+||||+|+..++ .+++++|........ ..     ....        ........|+
T Consensus       222 ~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~Tp  300 (446)
T PHA02946        222 NVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTD  300 (446)
T ss_pred             cHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCH
Confidence            8899999995 99999999999999999999988 477766655433210 00     0000        0000123489


Q ss_pred             HHHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          216 LNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       216 l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      |++|...|..+++.-... .+.   -.++++..|+.. +|..+++.|+..|++.+.. ..+.++.+.+--.....|+..
T Consensus       301 Lh~Aa~~g~~eivk~Ll~-~~~---~~~t~L~~A~~~-~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~  373 (446)
T PHA02946        301 FKMAVEVGSIRCVKYLLD-NDI---ICEDAMYYAVLS-EYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVILSK  373 (446)
T ss_pred             HHHHHHcCCHHHHHHHHH-CCC---ccccHHHHHHHh-CHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHHHH
Confidence            999999999877653222 111   226788899998 8999999999999999874 456666666655566666654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=2.7e-26  Score=246.28  Aligned_cols=274  Identities=18%  Similarity=0.085  Sum_probs=187.7

Q ss_pred             ccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCC--HHHHHHHHhcCCCC---CCCCcchhhHhhh----------
Q 014068            5 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH--VRCIRLVVADFVPS---VPFEVMNTQIEGD----------   69 (431)
Q Consensus         5 ~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~--~eiv~~LL~~~~~~---~~~~~~~l~~a~~----------   69 (431)
                      .+++.++|++|+++|++++..|. .|.||||+|+..|+  .++|++|+++|+..   +..+.++++.++.          
T Consensus       188 ~~~~~eIVklLLe~GADVN~kD~-~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIv  266 (764)
T PHA02716        188 MYVDIDILEWLCNNGVNVNLQNN-HLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEIT  266 (764)
T ss_pred             ccCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHH
Confidence            35788999999999999999997 99999999999995  58999999988864   4567888886532          


Q ss_pred             ---------------------------cCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHH--cCCHHHHHHHHHCCC
Q 014068           70 ---------------------------RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFDCVQLLLDLHA  120 (431)
Q Consensus        70 ---------------------------~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~--~g~~e~VklLL~~Ga  120 (431)
                                                 .+..+.++.++..   +..++.+|..|.||||+|+.  .++.++|++|+++|+
T Consensus       267 kiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~---GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA  343 (764)
T PHA02716        267 NIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP---GVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN  343 (764)
T ss_pred             HHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC---CCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC
Confidence                                       1222333333322   23478899999999999864  568999999999999


Q ss_pred             CCCcccccCCCccccCCCCCcHHHHHHh--------------cCCHHHHHHHHHCCCCCcccCCCCCcHHHHH----HHh
Q 014068          121 NVSAVTFHYGTSMDLIGAGSTPLHFAAC--------------GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA----RMW  182 (431)
Q Consensus       121 dvn~~d~~~~~~~~~~~~G~TpLh~Aa~--------------~g~~eivklLL~~GAdin~~d~~G~TpLh~A----a~~  182 (431)
                      +++.+|..          |+||||+|+.              .++.+++++|+++|++++.+|..|+||||.|    ...
T Consensus       344 DIN~kD~~----------G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~  413 (764)
T PHA02716        344 DLNEPDNI----------GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNY  413 (764)
T ss_pred             CCccCCCC----------CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhc
Confidence            99999976          9999999875              3789999999999999999999999999942    335


Q ss_pred             CcHHHHHHhcCCCCCC-CCCCCCCC----CCchhhhhHHHHHHHcCCc-----------------cccc---cCCCCCch
Q 014068          183 GRHWLEPLLAPSSDAV-MPRFHPSN----YLSLPLLSVLNVARECGLL-----------------SSTT---SSSDDADT  237 (431)
Q Consensus       183 g~~~v~~LL~~~a~~~-~~~~~~~~----~~~~~l~t~l~~A~~~G~~-----------------~~~~---a~~~~~~~  237 (431)
                      ++.+++++|....... ........    ....+ ..+.+.++..+..                 .+..   ....+.+.
T Consensus       414 ~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~-~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~  492 (764)
T PHA02716        414 MYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTP-CIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAV  492 (764)
T ss_pred             ChHHHHHHHHhCcchhhhhhhhhhhhhhccCcch-hhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccc
Confidence            6788988877643221 11000000    00001 0112222221110                 0000   00011122


Q ss_pred             hhhhhccccchhccCCChHH-----HHHHHHHhhhcCCCCCCCCCCCCCCCCccccc-----ccccc
Q 014068          238 CAVCLERACTVAAEGCRHEL-----CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH-----GIVSF  294 (431)
Q Consensus       238 C~vcle~~~~va~~~CgH~~-----C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~-----~I~~~  294 (431)
                      +...-.+|+..|+.. ||..     .++.|++.|++.|..+..+.+|.+.+.--.|-     +|++.
T Consensus       493 ~D~~G~TPLh~Aa~~-g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~  558 (764)
T PHA02716        493 CETSGMTPLHVSIIS-HTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKN  558 (764)
T ss_pred             cCCCCCCHHHHHHHc-CCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHH
Confidence            233335888888876 6653     35899999999999888888888776654443     56654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.5e-26  Score=233.59  Aligned_cols=186  Identities=19%  Similarity=0.165  Sum_probs=167.2

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC----CCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS----VPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~----~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+...    +..+.++++.|+..+..+.+
T Consensus        40 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv  118 (413)
T PHA02875         40 KLAMKFRDSEAIKLLMKHGAIPDVKYP-DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIM  118 (413)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccccCC-CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHH
Confidence            689999999999999999999998876 8999999999999999999999977643    34688999999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      +.++..+.   .++.++..|.||||+|+..|+.+++++|+++|++++..|..          |.||||+|+..|+.++++
T Consensus       119 ~~Ll~~ga---d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~----------g~TpL~~A~~~g~~eiv~  185 (413)
T PHA02875        119 KLLIARGA---DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC----------GCTPLIIAMAKGDIAICK  185 (413)
T ss_pred             HHHHhCCC---CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHH
Confidence            98887643   57888999999999999999999999999999999999876          999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCC-cHHHHHHHhCcHHHHHHh-cCCCCCCCC
Q 014068          157 VLLSRGASRMSLNCNGW-LPLDVARMWGRHWLEPLL-APSSDAVMP  200 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~-TpLh~Aa~~g~~~v~~LL-~~~a~~~~~  200 (431)
                      +|+++|++++..+..|. ||+|+|+..|+.+++++| ..++++++.
T Consensus       186 ~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            99999999999988874 899999999999997655 557777654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=6.9e-26  Score=243.18  Aligned_cols=186  Identities=13%  Similarity=-0.003  Sum_probs=155.2

Q ss_pred             eccCCHHHHHHHHHcC-CCCccc-CCCCCchHHHHHHH--hCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCCh--h
Q 014068            4 CRYGHWEVVQTLLLFR-CNVTRA-DYLSGRTALHFAAV--NGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDG--S   74 (431)
Q Consensus         4 a~~G~~evVk~LL~~g-adi~~~-d~~~G~TpLh~Aa~--~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~--~   74 (431)
                      .+.++.++|++|+++| +|+|.. +. .|.||||+|+.  .++.+++++|+++|+..   +..+.+++|.|+..+..  +
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~-~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~e  228 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKK-TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCAS  228 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCC-CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHH
Confidence            3568999999999999 999998 65 89999999875  46789999999988754   45688999999998854  6


Q ss_pred             hHHhhhhhhhhhhhhcccCCCCchHHHHH-------------------------------------HHcCCHHHHHHHHH
Q 014068           75 SVKSKCDQSALSKFVNKAADGGITALHMA-------------------------------------ALNGYFDCVQLLLD  117 (431)
Q Consensus        75 ~~~~~~~~~~~~~~in~~d~~G~TpLh~A-------------------------------------a~~g~~e~VklLL~  117 (431)
                      .++.++..+   ..+|.+|..|.||||+|                                     +..|+.++|++|++
T Consensus       229 IVklLLe~G---ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe  305 (764)
T PHA02716        229 VIKKIIELG---GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ  305 (764)
T ss_pred             HHHHHHHcC---CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh
Confidence            677776654   46899999999999975                                     45688999999999


Q ss_pred             CCCCCCcccccCCCccccCCCCCcHHHHHHh--cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH--------------
Q 014068          118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM--------------  181 (431)
Q Consensus       118 ~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~--~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~--------------  181 (431)
                      +|++++.+|..          |+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.              
T Consensus       306 ~GAdIN~kD~~----------G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~  375 (764)
T PHA02716        306 PGVKLHYKDSA----------GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDN  375 (764)
T ss_pred             CCCceeccCCC----------CCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccc
Confidence            99999999876          9999999864  568999999999999999999999999999875              


Q ss_pred             hCcHHHHHHh-cCCCCCCCCCCC
Q 014068          182 WGRHWLEPLL-APSSDAVMPRFH  203 (431)
Q Consensus       182 ~g~~~v~~LL-~~~a~~~~~~~~  203 (431)
                      .++.+++++| ..|++++..+..
T Consensus       376 ~~~~eVVklLL~~GADIn~kn~~  398 (764)
T PHA02716        376 DIRLDVIQCLISLGADITAVNCL  398 (764)
T ss_pred             cChHHHHHHHHHCCCCCCCcCCC
Confidence            2677886554 556776665433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.93  E-value=2e-26  Score=235.05  Aligned_cols=170  Identities=27%  Similarity=0.349  Sum_probs=158.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+||.+++++++|+||++|+++|..+..-|.||||||+++|+..+|.+|+++|++   .+..|.+++|+++..++...+.
T Consensus        83 HWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~va  162 (600)
T KOG0509|consen   83 HWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVA  162 (600)
T ss_pred             eHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHH
Confidence            8999999999999999999999999865899999999999999999999999986   4677889999999999999998


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      +++...   .++|.+|.+|+||||+||.+|+...+..||..|+.++..|..         .|+||||+|+..||..++++
T Consensus       163 yll~~~---~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~---------~g~TpLHwa~~~gN~~~v~L  230 (600)
T KOG0509|consen  163 YLLSKG---ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDN---------HGNTPLHWAVVGGNLTAVKL  230 (600)
T ss_pred             HHHHhc---ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccc---------cCCchHHHHHhcCCcceEeh
Confidence            888776   569999999999999999999998899999999999999854         49999999999999999998


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHh
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMW  182 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~  182 (431)
                      |++.|++.+.+|.+|.||+.+|...
T Consensus       231 l~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  231 LLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hhhcCCcccccccCCCCHHHHHHHh
Confidence            8888999999999999999999776

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.93  E-value=2.8e-25  Score=233.08  Aligned_cols=267  Identities=13%  Similarity=0.007  Sum_probs=197.8

Q ss_pred             eccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHh--CCHHHHHHHHhcCCCCCCC--CcchhhHhhhcCC------h
Q 014068            4 CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN--GHVRCIRLVVADFVPSVPF--EVMNTQIEGDRGD------G   73 (431)
Q Consensus         4 a~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~--G~~eiv~~LL~~~~~~~~~--~~~~l~~a~~~~~------~   73 (431)
                      ....+.++|++||++|+|+|.. . .|.||||+++..  ++.++|++|+++|++.+..  +.++++.+...+.      .
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~-~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-Y-RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-c-CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHH
Confidence            3467899999999999999988 4 799999876654  4799999999999876643  4688887765442      3


Q ss_pred             hhHHhhhhhhhhhhhhcccCCCCchHHHHHHHc---CCHHHHHHHHHCCCCC-CcccccCCCccccCCCCCcHHHHHHhc
Q 014068           74 SSVKSKCDQSALSKFVNKAADGGITALHMAALN---GYFDCVQLLLDLHANV-SAVTFHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~---g~~e~VklLL~~Gadv-n~~d~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                      +.++.++..+   .++|.+|..|.||||.|+..   |+.++|++|+++|+++ +..+..          |+||||+|+..
T Consensus        89 ~iv~~Ll~~G---adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~----------g~tpLh~a~~~  155 (494)
T PHA02989         89 KIVKLLLKFG---ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSR----------GYNLLHMYLES  155 (494)
T ss_pred             HHHHHHHHCC---CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCC----------CCCHHHHHHHh
Confidence            4455555443   45899999999999988765   6799999999999999 777765          99999998764


Q ss_pred             --CCHHHHHHHHHCCCCCcc-cCCCCCcHHHHHHHhC----cHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHH
Q 014068          150 --GNLKCCQVLLSRGASRMS-LNCNGWLPLDVARMWG----RHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARE  221 (431)
Q Consensus       150 --g~~eivklLL~~GAdin~-~d~~G~TpLh~Aa~~g----~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~  221 (431)
                        ++.++|++|+++|++++. .+..|.||||+|+..+    +.+++++| ..|++++.....+        .++++.+..
T Consensus       156 ~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~--------~t~l~~~~~  227 (494)
T PHA02989        156 FSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGS--------ESVLESFLD  227 (494)
T ss_pred             ccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCcc--------ccHHHHHHH
Confidence              689999999999999998 6889999999998765    77876555 5567766544321        244444433


Q ss_pred             cCCc------cccc--cCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          222 CGLL------SSTT--SSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       222 ~G~~------~~~~--a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .+..      .+..  ....+.+.-.....+|+..|+.. |+...++.|++.|++++..+..+.+|.+.++-.....|+.
T Consensus       228 ~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~-~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        228 NNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKV-DNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             hchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHh-cCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            2210      0000  00000000011225788888887 8888999999999999999999999998887777666665


Q ss_pred             c
Q 014068          294 F  294 (431)
Q Consensus       294 ~  294 (431)
                      +
T Consensus       307 ~  307 (494)
T PHA02989        307 R  307 (494)
T ss_pred             H
Confidence            4

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.8e-25  Score=208.67  Aligned_cols=169  Identities=15%  Similarity=0.148  Sum_probs=130.7

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhC--CHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS   78 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G--~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~   78 (431)
                      |+|+..|+.++|+.|++.   ++..+. .|.||||+|+..+  +.+++++|+++++.                       
T Consensus        26 ~~A~~~~~~~~vk~Li~~---~n~~~~-~g~TpLh~a~~~~~~~~eiv~~Ll~~gad-----------------------   78 (209)
T PHA02859         26 FYYVEKDDIEGVKKWIKF---VNDCND-LYETPIFSCLEKDKVNVEILKFLIENGAD-----------------------   78 (209)
T ss_pred             HHHHHhCcHHHHHHHHHh---hhccCc-cCCCHHHHHHHcCCCCHHHHHHHHHCCCC-----------------------
Confidence            457777778888777764   344554 6778888777644  77778888776654                       


Q ss_pred             hhhhhhhhhhhcccC-CCCchHHHHHHHc---CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHh--cCCH
Q 014068           79 KCDQSALSKFVNKAA-DGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNL  152 (431)
Q Consensus        79 ~~~~~~~~~~in~~d-~~G~TpLh~Aa~~---g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~--~g~~  152 (431)
                                ++.++ ..|.||||+|+..   ++.+++++|+++|++++.+|..          |.||||+|+.  .++.
T Consensus        79 ----------vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~----------G~TpLh~a~~~~~~~~  138 (209)
T PHA02859         79 ----------VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED----------GKNLLHMYMCNFNVRI  138 (209)
T ss_pred             ----------CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHhccCCH
Confidence                      77776 4799999998764   4799999999999999998876          9999999876  4689


Q ss_pred             HHHHHHHHCCCCCcccCCCCCcHHHH-HHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCC
Q 014068          153 KCCQVLLSRGASRMSLNCNGWLPLDV-ARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGL  224 (431)
Q Consensus       153 eivklLL~~GAdin~~d~~G~TpLh~-Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~  224 (431)
                      +++++|+++|++++.+|.+|.||||. |+..++.+++++|. .+++++..+..+.        |++++|...+.
T Consensus       139 ~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~--------tpl~la~~~~~  204 (209)
T PHA02859        139 NVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGY--------NCYDLIKFRNL  204 (209)
T ss_pred             HHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC--------CHHHHHhhhhh
Confidence            99999999999999999999999996 55677888876555 5677766544433        78888877653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.4e-25  Score=241.19  Aligned_cols=191  Identities=15%  Similarity=0.063  Sum_probs=152.0

Q ss_pred             eccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHH----HHHHHHhcCCCCCCCCc-chhhHhhhcCChhhHHh
Q 014068            4 CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVR----CIRLVVADFVPSVPFEV-MNTQIEGDRGDGSSVKS   78 (431)
Q Consensus         4 a~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~e----iv~~LL~~~~~~~~~~~-~~l~~a~~~~~~~~~~~   78 (431)
                      +..|+.++|++||++|++++..+. .|+||||+|+..|+.+    ++++|++.+...+.... ...+.++..++.+.++.
T Consensus        43 ~~~~~~~~v~~Ll~~ga~v~~~~~-~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~  121 (661)
T PHA02917         43 EHCNNVEVVKLLLDSGTNPLHKNW-RQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKV  121 (661)
T ss_pred             hhcCcHHHHHHHHHCCCCccccCC-CCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHH
Confidence            455889999999999999998887 9999999999999954    56788876443333333 44556777788888888


Q ss_pred             hhhhhhhhhhhcccCCCCchHHHHHH--HcCCHHHHHHHHHCCCCCCccccc--CCCccc--cCCCCCcHHHHHHh----
Q 014068           79 KCDQSALSKFVNKAADGGITALHMAA--LNGYFDCVQLLLDLHANVSAVTFH--YGTSMD--LIGAGSTPLHFAAC----  148 (431)
Q Consensus        79 ~~~~~~~~~~in~~d~~G~TpLh~Aa--~~g~~e~VklLL~~Gadvn~~d~~--~~~~~~--~~~~G~TpLh~Aa~----  148 (431)
                      ++..   +..+|.+|..|.||||+|+  ..|+.++|++|+++|++++..+..  +|...+  ....+.||||+|+.    
T Consensus       122 Ll~~---Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~  198 (661)
T PHA02917        122 LVEH---GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLY  198 (661)
T ss_pred             HHHc---CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhccc
Confidence            8765   3468999999999999654  578999999999999999876532  110000  01134699999986    


Q ss_pred             -------cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcH--HHHHHhcCCCCCC
Q 014068          149 -------GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH--WLEPLLAPSSDAV  198 (431)
Q Consensus       149 -------~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~--~v~~LL~~~a~~~  198 (431)
                             .++.++|++|+++|||+|.+|.+|+||||+|+..|+.  +++++|.++++.+
T Consensus       199 ~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~  257 (661)
T PHA02917        199 SESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNT  257 (661)
T ss_pred             ccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCccc
Confidence                   5689999999999999999999999999999999985  7899998887764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=9.5e-25  Score=220.93  Aligned_cols=185  Identities=14%  Similarity=0.019  Sum_probs=160.5

Q ss_pred             EeeccCCHHHHHHHHHcCCCCc------ccCCCCCchHHHHHHH--hCCHHHHHHHHhcCCCCCC-CCcchhhHhhhcCC
Q 014068            2 QACRYGHWEVVQTLLLFRCNVT------RADYLSGRTALHFAAV--NGHVRCIRLVVADFVPSVP-FEVMNTQIEGDRGD   72 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~------~~d~~~G~TpLh~Aa~--~G~~eiv~~LL~~~~~~~~-~~~~~l~~a~~~~~   72 (431)
                      +|+..+..+++++|+.+|++++      .+++ .++|+||+|+.  .|+.++|++|+++|++.+. .+.++++.++..+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~-~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~  161 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCN-SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKE  161 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccc-cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCc
Confidence            4788899999999999999988      6676 89999999999  8999999999999998755 44789999999999


Q ss_pred             hhhHHhhhhhhhhhhhhccc-----CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHH
Q 014068           73 GSSVKSKCDQSALSKFVNKA-----ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  147 (431)
Q Consensus        73 ~~~~~~~~~~~~~~~~in~~-----d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa  147 (431)
                      .+.++.++..+...  .+..     +..|.|++|.|+.+++.+++++|+++|+++|.++..          |.||||+|+
T Consensus       162 ~eIVk~Lls~Ga~~--~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~----------G~TpLh~Aa  229 (437)
T PHA02795        162 SSVVEFILNCGIPD--ENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAG----------GRTLLYRAI  229 (437)
T ss_pred             HHHHHHHHhcCCcc--cccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCC----------CCCHHHHHH
Confidence            99999998876421  2222     234789999999999999999999999999999976          999999999


Q ss_pred             hcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCc--------HHHHHHhcC-CCCCCC
Q 014068          148 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR--------HWLEPLLAP-SSDAVM  199 (431)
Q Consensus       148 ~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~--------~~v~~LL~~-~a~~~~  199 (431)
                      ..|+.+++++|+++||+++.+|..|+||||+|+..|+        .+++++|+. +++.+.
T Consensus       230 ~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        230 YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999999999999999999999999999999984        578766654 454443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=4e-24  Score=224.04  Aligned_cols=159  Identities=11%  Similarity=0.021  Sum_probs=106.3

Q ss_pred             eccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHh-----CCHHHHHHHHhcCCCC---CCCCcchhhHhhhcC---C
Q 014068            4 CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN-----GHVRCIRLVVADFVPS---VPFEVMNTQIEGDRG---D   72 (431)
Q Consensus         4 a~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~-----G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~---~   72 (431)
                      ...++.++|++|+++|+++|..+. .|.||||+|+.+     ++.+++++|+++|++.   +..+.+++|.++..+   .
T Consensus        46 ~~~~~~~iv~~Ll~~Gadvn~~d~-~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~  124 (489)
T PHA02798         46 RDSPSTDIVKLFINLGANVNGLDN-EYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINN  124 (489)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCC-CCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcCh
Confidence            345688999999999999999887 999999998864     6789999999988763   344666677666554   3


Q ss_pred             hhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC---HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhc
Q 014068           73 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY---FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        73 ~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~---~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                      .+.+..++..   +..++.+|..|.||||+|+..|+   .+++++|+++|++++..+..         .|.||||.++..
T Consensus       125 ~~iv~~Ll~~---Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~---------~~~t~Lh~~~~~  192 (489)
T PHA02798        125 LEILLFMIEN---GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNK---------EKYDTLHCYFKY  192 (489)
T ss_pred             HHHHHHHHHc---CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCc---------CCCcHHHHHHHh
Confidence            3444444433   23466666677777777777666   67777777777776665432         266677666543


Q ss_pred             ----CCHHHHHHHHHCCCCCcccCCCCCcH
Q 014068          150 ----GNLKCCQVLLSRGASRMSLNCNGWLP  175 (431)
Q Consensus       150 ----g~~eivklLL~~GAdin~~d~~G~Tp  175 (431)
                          ++.+++++|+++|++++..+..|.++
T Consensus       193 ~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~  222 (489)
T PHA02798        193 NIDRIDADILKLFVDNGFIINKENKSHKKK  222 (489)
T ss_pred             ccccCCHHHHHHHHHCCCCcccCCccccch
Confidence                35666666666666555444333333

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.92  E-value=5.7e-24  Score=223.16  Aligned_cols=237  Identities=14%  Similarity=0.009  Sum_probs=167.0

Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhC------CHHHHHHHHhcCCCC---CCCCcchhhHhhhc---CCh
Q 014068            6 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG------HVRCIRLVVADFVPS---VPFEVMNTQIEGDR---GDG   73 (431)
Q Consensus         6 ~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G------~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~---~~~   73 (431)
                      .++.++|++||++|+++|..+  .|.||||.|+.++      +.+++++|+++|++.   +..+.++++.++..   +..
T Consensus        47 ~~~~~iv~~Ll~~GAdvn~~~--~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~  124 (494)
T PHA02989         47 DVKIKIVKLLIDNGADVNYKG--YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNC  124 (494)
T ss_pred             CCChHHHHHHHHcCCCccCCC--CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcH
Confidence            357999999999999999876  5799999998754      578999999988764   45578888876544   456


Q ss_pred             hhHHhhhhhhhhhhhh-cccCCCCchHHHHHHHc--CCHHHHHHHHHCCCCCCcc-cccCCCccccCCCCCcHHHHHHhc
Q 014068           74 SSVKSKCDQSALSKFV-NKAADGGITALHMAALN--GYFDCVQLLLDLHANVSAV-TFHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~i-n~~d~~G~TpLh~Aa~~--g~~e~VklLL~~Gadvn~~-d~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                      +.++.++..+   .++ +.+|..|.||||+|+..  ++.++|++|+++|++++.. +..          |.||||+|+..
T Consensus       125 eiv~~Ll~~G---adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~----------g~tpL~~a~~~  191 (494)
T PHA02989        125 DMLRFLLSKG---INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY----------GLTPMNIYLRN  191 (494)
T ss_pred             HHHHHHHHCC---CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc----------CCChHHHHHhc
Confidence            7777776654   356 67889999999998764  6899999999999999883 433          99999998765


Q ss_pred             C----CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhC------cHHHHHHhcCCCCCCCCCCCCCCCCchhhhhHHHHH
Q 014068          150 G----NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG------RHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVA  219 (431)
Q Consensus       150 g----~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g------~~~v~~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A  219 (431)
                      +    +.+++++|+++|++++..|..|.|+||.++..+      ..+++.+|..+++++..+..+.        |+|++|
T Consensus       192 ~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~--------TpL~~A  263 (494)
T PHA02989        192 DIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGF--------NPLLIS  263 (494)
T ss_pred             ccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCC--------CHHHHH
Confidence            4    899999999999998888777777777665433      2455666666666555443322        566666


Q ss_pred             HHcCCcccccc---CCCCCchhhhhhccccchhccCCChHHHHHHHHHhh
Q 014068          220 RECGLLSSTTS---SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLC  266 (431)
Q Consensus       220 ~~~G~~~~~~a---~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~g  266 (431)
                      ...|..+++..   ...+.........+++..|+.. ||...++.+|+.+
T Consensus       264 a~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~-~~~~iv~~LL~~~  312 (494)
T PHA02989        264 AKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKH-GNIDMLNRILQLK  312 (494)
T ss_pred             HHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHhcC
Confidence            66665443331   1111111122224556666666 6666666666654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=9.5e-25  Score=214.79  Aligned_cols=178  Identities=28%  Similarity=0.318  Sum_probs=156.5

Q ss_pred             EeeccCCHHHHHHHHHc-CCCCcccC-------CCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCC---CcchhhHhhhc
Q 014068            2 QACRYGHWEVVQTLLLF-RCNVTRAD-------YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDR   70 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~-gadi~~~d-------~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~---~~~~l~~a~~~   70 (431)
                      +||++||.++|++|+++ ++++....       ...|-+||.-|+..||+++|+.|+.+++..+..   ..+++..|+..
T Consensus        48 iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD  127 (615)
T KOG0508|consen   48 IAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD  127 (615)
T ss_pred             eehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc
Confidence            68999999999999994 66665322       246889999999999999999999988766544   34689999999


Q ss_pred             CChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC
Q 014068           71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  150 (431)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g  150 (431)
                      |..+.++++++++.   +++..|..|.|-||+|+..||.+++++|++.|+|+|.++..          |+|+||.+++.|
T Consensus       128 G~leivKyLvE~ga---d~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~k----------GNTALH~caEsG  194 (615)
T KOG0508|consen  128 GHLEIVKYLVEHGA---DPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYK----------GNTALHDCAESG  194 (615)
T ss_pred             chhHHHHHHHHcCC---CCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhccc----------CchHHHhhhhcc
Confidence            99999999986644   57889999999999999999999999999999999999976          999999999999


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC
Q 014068          151 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  193 (431)
Q Consensus       151 ~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~  193 (431)
                      +++++++|+++|+.++ +|..|.|||..|+..|+.+++.+|..
T Consensus       195 ~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cHHHHHHHHhCCceee-ecCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999999874 56779999999999999999888876

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=2e-24  Score=224.22  Aligned_cols=214  Identities=22%  Similarity=0.251  Sum_probs=181.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHh--------cCCCCCCCCcchhhHhhhcCC
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------DFVPSVPFEVMNTQIEGDRGD   72 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~--------~~~~~~~~~~~~l~~a~~~~~   72 (431)
                      |.||..++.|..+.|++.|+++-..|. +|.+|+|.|++.|..++.++.+.        +....+..+.+++|.|+..++
T Consensus       159 h~A~~~~~~E~~k~Li~~~a~~~K~~~-~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~  237 (929)
T KOG0510|consen  159 HLAARKNKVEAKKELINKGADPCKSDI-DGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGD  237 (929)
T ss_pred             hHHHhcChHHHHHHHHhcCCCCCcccC-cCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCC
Confidence            789999999988999999999998887 99999999999999999999996        122345667889999999999


Q ss_pred             hhhHHhhhhhhh------------hhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCC
Q 014068           73 GSSVKSKCDQSA------------LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS  140 (431)
Q Consensus        73 ~~~~~~~~~~~~------------~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~  140 (431)
                      .+.++..+..+.            .+..+|..|++|.||||+|++.|++++|+.|+..|++++.++.+          +.
T Consensus       238 ~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d----------~~  307 (929)
T KOG0510|consen  238 IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKD----------EE  307 (929)
T ss_pred             HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCC----------CC
Confidence            999987775532            23458999999999999999999999999999999999999977          99


Q ss_pred             cHHHHHHhcCCHHHHHHHHH-CC-CCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCCCCCCCCCCCCCCchhhhhHHHH
Q 014068          141 TPLHFAACGGNLKCCQVLLS-RG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV  218 (431)
Q Consensus       141 TpLh~Aa~~g~~eivklLL~-~G-Adin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~  218 (431)
                      ||||.||..|++..|+.||+ .| ...|..|..|+||||+|+..||..++++|++.+........    ...-..|+||.
T Consensus       308 spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e----~D~dg~TaLH~  383 (929)
T KOG0510|consen  308 SPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSE----ADSDGNTALHL  383 (929)
T ss_pred             CchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccc----cccCCchhhhH
Confidence            99999999999999999999 54 45688899999999999999999999888877666553111    12234488999


Q ss_pred             HHHcCCccccc
Q 014068          219 ARECGLLSSTT  229 (431)
Q Consensus       219 A~~~G~~~~~~  229 (431)
                      |+.+|....+.
T Consensus       384 Aa~~g~~~av~  394 (929)
T KOG0510|consen  384 AAKYGNTSAVQ  394 (929)
T ss_pred             HHHhccHHHHH
Confidence            99999876554

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.3e-24  Score=221.87  Aligned_cols=148  Identities=24%  Similarity=0.238  Sum_probs=96.1

Q ss_pred             HHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhh
Q 014068            9 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF   88 (431)
Q Consensus         9 ~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~   88 (431)
                      .+++++|+++|++++..+...|.||||+|+..|+.+++++|++.|+.                                 
T Consensus       147 ~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad---------------------------------  193 (477)
T PHA02878        147 AEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN---------------------------------  193 (477)
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCC---------------------------------
Confidence            45999999999999999973399999999999999999999988765                                 


Q ss_pred             hcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhc-CCHHHHHHHHHCCCCCcc
Q 014068           89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG-GNLKCCQVLLSRGASRMS  167 (431)
Q Consensus        89 in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~-g~~eivklLL~~GAdin~  167 (431)
                      ++.+|..|.||||+|+..|+.+++++|+++|++++.++..          |.||||+|+.. ++.+++++|+++|++++.
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~----------g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKC----------GNTPLHISVGYCKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHhcCCHHHHHHHHHcCCCCCc
Confidence            4555555555555555555555555555555555555544          55555555543 455555555555555555


Q ss_pred             cCC-CCCcHHHHHHHhCcHHHH-HHhcCCCCCCCCC
Q 014068          168 LNC-NGWLPLDVARMWGRHWLE-PLLAPSSDAVMPR  201 (431)
Q Consensus       168 ~d~-~G~TpLh~Aa~~g~~~v~-~LL~~~a~~~~~~  201 (431)
                      ++. .|.||||+|  .++.+++ .||..+++++..+
T Consensus       264 ~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d  297 (477)
T PHA02878        264 KSYILGLTALHSS--IKSERKLKLLLEYGADINSLN  297 (477)
T ss_pred             cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcC
Confidence            543 455555555  2333443 2333444444443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3e-24  Score=200.46  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             CEeecc--CCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHh---CCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhh
Q 014068            1 MQACRY--GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS   75 (431)
Q Consensus         1 H~Aa~~--G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~---G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~   75 (431)
                      |+|+..  |+.++|++|+++|++++..+...|+||||+|+..   ++.+++++|+++++.                    
T Consensus        56 h~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad--------------------  115 (209)
T PHA02859         56 FSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS--------------------  115 (209)
T ss_pred             HHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC--------------------
Confidence            456654  5899999999999999998754899999998864   579999999998775                    


Q ss_pred             HHhhhhhhhhhhhhcccCCCCchHHHHHHH--cCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHH-HHhcCCH
Q 014068           76 VKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF-AACGGNL  152 (431)
Q Consensus        76 ~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~--~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~-Aa~~g~~  152 (431)
                                   +|.+|..|.||||+|+.  .++.+++++|+++|++++.+|.+          |.||||. |+..++.
T Consensus       116 -------------in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~----------g~t~Lh~~a~~~~~~  172 (209)
T PHA02859        116 -------------ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFD----------NNNILYSYILFHSDK  172 (209)
T ss_pred             -------------CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCC----------CCcHHHHHHHhcCCH
Confidence                         88999999999999986  46899999999999999999976          9999995 6778999


Q ss_pred             HHHHHHHHCCCCCcccCCCCCcHHHHHHHhC
Q 014068          153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWG  183 (431)
Q Consensus       153 eivklLL~~GAdin~~d~~G~TpLh~Aa~~g  183 (431)
                      +++++|+++|++++.+|..|+||||+|...+
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999999999999764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=4.6e-24  Score=223.64  Aligned_cols=189  Identities=14%  Similarity=0.063  Sum_probs=155.5

Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhC---CHHHHHHHHhcCCCC---CCCCcchhhHhhhcCC---hhhH
Q 014068            6 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG---HVRCIRLVVADFVPS---VPFEVMNTQIEGDRGD---GSSV   76 (431)
Q Consensus         6 ~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G---~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~---~~~~   76 (431)
                      .++.+++++|+++|+|+|..|. .|+||||+|+..|   +.+++++|+++|++.   +..+.++++.++..+.   .+.+
T Consensus        86 ~~~~~iv~~Ll~~GadiN~~d~-~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv  164 (489)
T PHA02798         86 KHMLDIVKILIENGADINKKNS-DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEII  164 (489)
T ss_pred             HhHHHHHHHHHHCCCCCCCCCC-CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHH
Confidence            3678999999999999999998 9999999999986   789999999988764   4668899999999887   6777


Q ss_pred             HhhhhhhhhhhhhcccC-CCCchHHHHHHHc----CCHHHHHHHHHCCCCCCcccccCCCccc-----------------
Q 014068           77 KSKCDQSALSKFVNKAA-DGGITALHMAALN----GYFDCVQLLLDLHANVSAVTFHYGTSMD-----------------  134 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~----g~~e~VklLL~~Gadvn~~d~~~~~~~~-----------------  134 (431)
                      +.++..+   ..++.++ ..|.||||.++..    ++.+++++|+++|++++..+....+.+.                 
T Consensus       165 ~~Ll~~g---adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i  241 (489)
T PHA02798        165 KLLLEKG---VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNI  241 (489)
T ss_pred             HHHHHhC---CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHH
Confidence            7766554   3466664 5789999998764    4899999999999999886644332211                 


Q ss_pred             ------------cCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCC
Q 014068          135 ------------LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAV  198 (431)
Q Consensus       135 ------------~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~  198 (431)
                                  ....|.||||+|+..|+.+++++|+++|||++.+|..|+||||+|+..++.+++.+|+ .+++.+
T Consensus       242 ~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        242 LDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence                        1146999999999999999999999999999999999999999999999998865554 455543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.6e-24  Score=213.16  Aligned_cols=144  Identities=31%  Similarity=0.309  Sum_probs=130.8

Q ss_pred             eeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHHhh
Q 014068            3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+..||+++||.|+++|+++|.... ...|||--|+.-||+++|+||++++++   .+..+.+.+++++-.|+..++..+
T Consensus        91 AsaAGHl~vVk~L~~~ga~VN~tT~-TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyL  169 (615)
T KOG0508|consen   91 ASAAGHLEVVKLLLRRGASVNDTTR-TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYL  169 (615)
T ss_pred             HhccCcHHHHHHHHHhcCccccccc-cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHH
Confidence            5678999999999999999998886 778999999999999999999998775   567789999999999999999998


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                      +..+.   ++|.++..|.|+||.++..|++|+||+|+.+|+.++. |.          .|.|||..|+..|+.++|.+|+
T Consensus       170 le~gA---Dvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~----------~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  170 LEQGA---DVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DG----------HGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             HHhCC---CcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cC----------CCCchHHHHhhhcchHHHHHHh
Confidence            87654   6999999999999999999999999999999998754 32          4999999999999999999999


Q ss_pred             HC
Q 014068          160 SR  161 (431)
Q Consensus       160 ~~  161 (431)
                      +.
T Consensus       236 ~~  237 (615)
T KOG0508|consen  236 QC  237 (615)
T ss_pred             cC
Confidence            73

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.2e-23  Score=233.02  Aligned_cols=156  Identities=22%  Similarity=0.217  Sum_probs=140.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |.||..|+.++++.|+++|+++|..|. .|+||||+|+..|+.+++++|++++++                         
T Consensus       530 ~~Aa~~g~~~~l~~Ll~~G~d~n~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~gad-------------------------  583 (823)
T PLN03192        530 LTVASTGNAALLEELLKAKLDPDIGDS-KGRTPLHIAASKGYEDCVLVLLKHACN-------------------------  583 (823)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcChHHHHHHHHhcCCC-------------------------
Confidence            458899999999999999999999998 999999999999999999999988765                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              +|.+|.+|.||||+|+..|+.+++++|++.++..+..+            |.++||+|+..|+.+++++|++
T Consensus       584 --------in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~------------~~~~L~~Aa~~g~~~~v~~Ll~  643 (823)
T PLN03192        584 --------VHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHA------------AGDLLCTAAKRNDLTAMKELLK  643 (823)
T ss_pred             --------CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCccc------------CchHHHHHHHhCCHHHHHHHHH
Confidence                    78899999999999999999999999999887665433            7799999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCC
Q 014068          161 RGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRF  202 (431)
Q Consensus       161 ~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~  202 (431)
                      +|+|+|.+|.+|+||||+|+..|+.+++++| ..+++++..+.
T Consensus       644 ~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~  686 (823)
T PLN03192        644 QGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANT  686 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999997666 55777666543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.9e-22  Score=215.59  Aligned_cols=237  Identities=11%  Similarity=-0.011  Sum_probs=171.5

Q ss_pred             HHHHHHHHHcCCCCcccCCCCCchHHHHHHHh---CCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH----h
Q 014068            9 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK----S   78 (431)
Q Consensus         9 ~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~---G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~----~   78 (431)
                      ++.|+.|+.+|..++..|. +|+||||+|+..   |+.++|++|+++|+..   +..+.++++.++..+......    .
T Consensus        12 ~~~~~~l~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQ-FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHHHHhccCcccccCC-CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            4788999999999988887 999999998665   8899999999988864   455779999999988755432    2


Q ss_pred             hhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHH--HhcCCHHHHH
Q 014068           79 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQ  156 (431)
Q Consensus        79 ~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~A--a~~g~~eivk  156 (431)
                      ++....   ..+..+  ..+++|+|+.+|+.++|++|+++|+++|..|.+          |+||||+|  +..|+.++++
T Consensus        91 Ll~~~~---~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~----------g~T~L~~~~a~~~~~~eivk  155 (661)
T PHA02917         91 LLEATG---YSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCEN----------HRSVIENYVMTDDPVPEIID  155 (661)
T ss_pred             HHhccC---CCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCC----------CccHHHHHHHccCCCHHHHH
Confidence            222111   123333  337788899999999999999999999999977          99999954  4588999999


Q ss_pred             HHHHCCCCCcccCC---CC-----------CcHHHHHHH-----------hCcHHHHHHhc-CCCCCCCCCCCCCCCCch
Q 014068          157 VLLSRGASRMSLNC---NG-----------WLPLDVARM-----------WGRHWLEPLLA-PSSDAVMPRFHPSNYLSL  210 (431)
Q Consensus       157 lLL~~GAdin~~d~---~G-----------~TpLh~Aa~-----------~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~  210 (431)
                      +|+++||++|..|.   .|           .||||+|+.           +++.+++++|. .|++++..+..+.     
T Consensus       156 lLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~-----  230 (661)
T PHA02917        156 LFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYC-----  230 (661)
T ss_pred             HHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCC-----
Confidence            99999999987653   34           599999986           45788876665 6888877655544     


Q ss_pred             hhhhHHHHHHHcCCcc--ccccCCCCCchhh------hhhccccchhc--------cCCChHHHHHHHHHhhhcC
Q 014068          211 PLLSVLNVARECGLLS--STTSSSDDADTCA------VCLERACTVAA--------EGCRHELCVRCALYLCSTN  269 (431)
Q Consensus       211 ~l~t~l~~A~~~G~~~--~~~a~~~~~~~C~------vcle~~~~va~--------~~CgH~~C~~cll~~ga~~  269 (431)
                         |++++|...|...  ++.....+.+...      .+-..+...++        ....+..++++|++.|++.
T Consensus       231 ---TpLh~A~~~g~~~~eivk~Li~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        231 ---TALQYYIKSSHIDIDIVKLLMKGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             ---cHHHHHHHcCCCcHHHHHHHHhCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence               8899999999753  3332222211100      00001112222        1224677999999999863

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.6e-22  Score=212.14  Aligned_cols=186  Identities=14%  Similarity=0.078  Sum_probs=143.3

Q ss_pred             CEeeccC---CHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhC--CHHHHHHHHhcCCCC-----CCCCcchhhHhhh-
Q 014068            1 MQACRYG---HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPS-----VPFEVMNTQIEGD-   69 (431)
Q Consensus         1 H~Aa~~G---~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G--~~eiv~~LL~~~~~~-----~~~~~~~l~~a~~-   69 (431)
                      |+|+.+|   +.++|++||++||+++.+|. .|+||||+|+..+  +.++|++|++.|+..     +..+..+++.++. 
T Consensus        46 h~A~~~~~~~~~eivklLLs~GAdin~kD~-~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s  124 (672)
T PHA02730         46 HCYVSNKCDTDIKIVRLLLSRGVERLCRNN-EGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSS  124 (672)
T ss_pred             HHHHHcCCcCcHHHHHHHHhCCCCCcccCC-CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHh
Confidence            6788886   59999999999999999997 9999999999977  799999999987643     2225567776666 


Q ss_pred             -cCChhhHHhhhhhhhhh--hhhcccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccc---cCCCccccCCCCC-c
Q 014068           70 -RGDGSSVKSKCDQSALS--KFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTF---HYGTSMDLIGAGS-T  141 (431)
Q Consensus        70 -~~~~~~~~~~~~~~~~~--~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~---~~~~~~~~~~~G~-T  141 (431)
                       .+..+.++.++......  ...+.++ ..|.+|+++|+..+++++|++|+++|++++-...   .+.      ..+. |
T Consensus       125 ~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~------~~~c~~  198 (672)
T PHA02730        125 DNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYD------SDRCKN  198 (672)
T ss_pred             cCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccccccccccccc------CCccch
Confidence             67777777776422211  1112223 2799999999999999999999999999962210   011      1244 5


Q ss_pred             HHHHH------HhcCCHHHHHHHHHCCCCCcccCCCCCcHHHH--HHHhCcHHHHHHhcC
Q 014068          142 PLHFA------ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV--ARMWGRHWLEPLLAP  193 (431)
Q Consensus       142 pLh~A------a~~g~~eivklLL~~GAdin~~d~~G~TpLh~--Aa~~g~~~v~~LL~~  193 (431)
                      .||++      ...++.+++++|+++||++|.+|.+|.||||+  |...|+.+++++|..
T Consensus       199 ~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        199 SLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             hHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            56644      35678999999999999999999999999995  555677999999887

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=3.5e-23  Score=226.63  Aligned_cols=182  Identities=27%  Similarity=0.342  Sum_probs=155.2

Q ss_pred             CEeeccC-CHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcC---CCCCCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYG-HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF---VPSVPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G-~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~---~~~~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..| ..++...++++|+++|.... .|.||||+|+..||.++++.|++.+   ......+.+.+|++...+.....
T Consensus       445 hvaa~~g~~~~~~~~l~~~g~~~n~~s~-~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~  523 (1143)
T KOG4177|consen  445 HVAAKKGRYLQIARLLLQYGADPNAVSK-QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVA  523 (1143)
T ss_pred             hhhhhcccHhhhhhhHhhcCCCcchhcc-ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHH
Confidence            6777788 77888888888888888776 8888888888888888888888755   34455677778888877777777


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      ..++..+.   .++.++..|.||||.|+.+|+.++||+||++|++++.+++.          |+||||.|+..|+.+++.
T Consensus       524 ~~l~~~ga---~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~----------G~TPLH~Aa~~G~~~i~~  590 (1143)
T KOG4177|consen  524 KILLEHGA---NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL----------GYTPLHQAAQQGHNDIAE  590 (1143)
T ss_pred             HHHhhcCC---ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCC----------CCChhhHHHHcChHHHHH
Confidence            77665543   47888899999999999999999999999999999999966          999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  196 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~  196 (431)
                      +|+++||++|+.|.+|.|||++|+..|+.+++++|.....
T Consensus       591 LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~  630 (1143)
T KOG4177|consen  591 LLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTA  630 (1143)
T ss_pred             HHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccC
Confidence            9999999999999999999999999999999877765433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1.3e-22  Score=222.94  Aligned_cols=179  Identities=24%  Similarity=0.192  Sum_probs=141.9

Q ss_pred             EeeccCCHHHHHHHHHc--CCCCcccCCCCCchHHH-HHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHh
Q 014068            2 QACRYGHWEVVQTLLLF--RCNVTRADYLSGRTALH-FAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS   78 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~--gadi~~~d~~~G~TpLh-~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~   78 (431)
                      .||..|+.+.|+.+++.  +.++|..|. .|+|||| .|+.+++.+++++|++++. .+..+.+++|.++.... ..+..
T Consensus        23 ~A~~~g~~~~v~~lL~~~~~~~in~~d~-~G~t~Lh~~A~~~~~~eiv~lLl~~g~-~~~~G~T~Lh~A~~~~~-~~v~~   99 (743)
T TIGR00870        23 PAAERGDLASVYRDLEEPKKLNINCPDR-LGRSALFVAAIENENLELTELLLNLSC-RGAVGDTLLHAISLEYV-DAVEA   99 (743)
T ss_pred             HHHHcCCHHHHHHHhccccccCCCCcCc-cchhHHHHHHHhcChHHHHHHHHhCCC-CCCcChHHHHHHHhccH-HHHHH
Confidence            58999999999999999  899998887 9999999 8889999999999999887 66788999998886322 22222


Q ss_pred             hhhhhhh-h------hhhcc----cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccC----CCccccCCCCCcHH
Q 014068           79 KCDQSAL-S------KFVNK----AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHY----GTSMDLIGAGSTPL  143 (431)
Q Consensus        79 ~~~~~~~-~------~~in~----~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~----~~~~~~~~~G~TpL  143 (431)
                      +...... .      ..++.    ....|.||||+|+.+|+.++|++||++|++++..+...    ....+....|.|||
T Consensus       100 ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL  179 (743)
T TIGR00870       100 ILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPL  179 (743)
T ss_pred             HHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHH
Confidence            2111110 0      01111    23469999999999999999999999999999754310    00111223599999


Q ss_pred             HHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhC
Q 014068          144 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  183 (431)
Q Consensus       144 h~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g  183 (431)
                      |+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus       180 ~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       180 NAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             HHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence            9999999999999999999999999999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.88  E-value=6e-23  Score=224.74  Aligned_cols=218  Identities=27%  Similarity=0.300  Sum_probs=144.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |.|+..|..++|+.|+.+|++++.... .|.||||.|+..++..+|+.++..++.   .+..+.+++|+++..+....+.
T Consensus       379 ~la~~~g~~~~v~Lll~~ga~~~~~gk-~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~  457 (1143)
T KOG4177|consen  379 HLAVKSGRVSVVELLLEAGADPNSAGK-NGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIA  457 (1143)
T ss_pred             hhhcccCchhHHHhhhhccCCcccCCC-CCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhh
Confidence            456677777777777777777666665 666666666666666666666654443   2344556666666555311111


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccC---------------------
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI---------------------  136 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~---------------------  136 (431)
                      .  .....+..+|..-..|.||||+|+..|+.++++.|++.++.++......-+.+++.                     
T Consensus       458 ~--~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~  535 (1143)
T KOG4177|consen  458 R--LLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL  535 (1143)
T ss_pred             h--hHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh
Confidence            1  11122233555555566666666666666665555555544333222111111111                     


Q ss_pred             --CCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhh
Q 014068          137 --GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLL  213 (431)
Q Consensus       137 --~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~  213 (431)
                        +.|.||||.|+..|++.+|++||++|||++++++.|+||||.|+..|+.+++.|| ..+++++..+..+.        
T Consensus       536 ~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~--------  607 (1143)
T KOG4177|consen  536 RTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGF--------  607 (1143)
T ss_pred             hcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCc--------
Confidence              3489999999999999999999999999999999999999999999999996655 55788877766544        


Q ss_pred             hHHHHHHHcCCccccc
Q 014068          214 SVLNVARECGLLSSTT  229 (431)
Q Consensus       214 t~l~~A~~~G~~~~~~  229 (431)
                      |++++|...|...++.
T Consensus       608 TpL~iA~~lg~~~~~k  623 (1143)
T KOG4177|consen  608 TPLHIAVRLGYLSVVK  623 (1143)
T ss_pred             chhHHHHHhcccchhh
Confidence            8899999999876665

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=1.1e-22  Score=194.84  Aligned_cols=159  Identities=25%  Similarity=0.273  Sum_probs=106.6

Q ss_pred             CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHH
Q 014068           22 VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH  101 (431)
Q Consensus        22 i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh  101 (431)
                      +|..|. +|+|+||||+.++++++|+.||+.+.-                                .++..++-|+||++
T Consensus       261 VNlaDs-NGNTALHYsVSHaNF~VV~~LLDSgvC--------------------------------~VD~qNrAGYtpiM  307 (452)
T KOG0514|consen  261 VNLADS-NGNTALHYAVSHANFDVVSILLDSGVC--------------------------------DVDQQNRAGYTPVM  307 (452)
T ss_pred             hhhhcC-CCCeeeeeeecccchHHHHHHhccCcc--------------------------------cccccccccccHHH
Confidence            577887 999999999999999999999975542                                25666666777777


Q ss_pred             HHHHc-----CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q 014068          102 MAALN-----GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL  176 (431)
Q Consensus       102 ~Aa~~-----g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpL  176 (431)
                      +|+..     .+.++|..|+..| |||++...         .|.|+|++|+.+|+.++|+.||..|||+|++|.+|-|+|
T Consensus       308 LaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ---------~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTAL  377 (452)
T KOG0514|consen  308 LAALAKLKQPADRTVVERLFKMG-DVNAKASQ---------HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTAL  377 (452)
T ss_pred             HHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh---------hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHH
Confidence            66643     3456666666554 66665544         366777777777777777777777777777777777777


Q ss_pred             HHHHHhCcHHHHHHhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccc
Q 014068          177 DVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTT  229 (431)
Q Consensus       177 h~Aa~~g~~~v~~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~  229 (431)
                      |.|++.||.+|+++|+.....+......+      +.|+|.+|-+.|++++..
T Consensus       378 MCA~EHGhkEivklLLA~p~cd~sLtD~D------gSTAl~IAleagh~eIa~  424 (452)
T KOG0514|consen  378 MCAAEHGHKEIVKLLLAVPSCDISLTDVD------GSTALSIALEAGHREIAV  424 (452)
T ss_pred             hhhhhhChHHHHHHHhccCcccceeecCC------CchhhhhHHhcCchHHHH
Confidence            77777777777666666555444332222      115666666666665543

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=8.1e-22  Score=177.90  Aligned_cols=144  Identities=19%  Similarity=0.218  Sum_probs=120.5

Q ss_pred             CHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhh
Q 014068            8 HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK   87 (431)
Q Consensus         8 ~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~   87 (431)
                      ...++..++      +.++. .|.||||+|+..|+.+++++|+.....                           .....
T Consensus         6 ~~~~~~~~~------~~~~~-~g~t~Lh~Aa~~g~~~~v~~l~~~~~~---------------------------~~~ga   51 (169)
T PHA02741          6 FMTCLEEMI------AEKNS-EGENFFHEAARCGCFDIIARFTPFIRG---------------------------DCHAA   51 (169)
T ss_pred             HHHHHHHHh------hcccc-CCCCHHHHHHHcCCHHHHHHHHHHhcc---------------------------chhhh
Confidence            344555554      34555 899999999999999999998742100                           00122


Q ss_pred             hhcccCCCCchHHHHHHHcCC----HHHHHHHHHCCCCCCcccc-cCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-C
Q 014068           88 FVNKAADGGITALHMAALNGY----FDCVQLLLDLHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-R  161 (431)
Q Consensus        88 ~in~~d~~G~TpLh~Aa~~g~----~e~VklLL~~Gadvn~~d~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~-~  161 (431)
                      .++.+|..|.||||+|+..|+    .+++++|+++|++++.++. .          |.||||+|+..++.+++++|++ .
T Consensus        52 ~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~----------g~TpLh~A~~~~~~~iv~~Ll~~~  121 (169)
T PHA02741         52 ALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE----------GDTALHLAAHRRDHDLAEWLCCQP  121 (169)
T ss_pred             hhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC----------CCCHHHHHHHcCCHHHHHHHHhCC
Confidence            378899999999999999999    5899999999999998874 5          9999999999999999999998 5


Q ss_pred             CCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          162 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       162 GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      |++++..|.+|+||||+|+..++.+++++|.+..
T Consensus       122 g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741        122 GIDLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999999999999999999998887643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.6e-21  Score=206.17  Aligned_cols=197  Identities=10%  Similarity=0.014  Sum_probs=142.8

Q ss_pred             eeccCCHHHHHHHHHcCCCCcccCCCCCchHHHH--HHHhCCHHHHHHHHh-----------------------------
Q 014068            3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHF--AAVNGHVRCIRLVVA-----------------------------   51 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~--Aa~~G~~eiv~~LL~-----------------------------   51 (431)
                      +...++.++|++||++||++|.+|. .|+||||+  |...|+.|+|++|++                             
T Consensus       209 ~~~~n~~eiv~lLIs~GadIN~kd~-~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (672)
T PHA02730        209 ESESLSKDVIKCLIDNNVSIHGRDE-GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFR  287 (672)
T ss_pred             hhhccCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhh
Confidence            3567899999999999999999998 99999995  555688999999998                             


Q ss_pred             ---cCCCCCC-----------------------CCcc---------------------hhhHhhhc---CChhhHHhhhh
Q 014068           52 ---DFVPSVP-----------------------FEVM---------------------NTQIEGDR---GDGSSVKSKCD   81 (431)
Q Consensus        52 ---~~~~~~~-----------------------~~~~---------------------~l~~a~~~---~~~~~~~~~~~   81 (431)
                         ++++...                       .+..                     .++.....   ...+.++.++.
T Consensus       288 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs  367 (672)
T PHA02730        288 VTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD  367 (672)
T ss_pred             cccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence               3332211                       0100                     11111111   12223333333


Q ss_pred             hhhhhhhhcccCCCCchHHHHHHHcCC----HHHHHHHHHCCC--CCCcccccCCCccccCCCCCcHHHH---HHhcC--
Q 014068           82 QSALSKFVNKAADGGITALHMAALNGY----FDCVQLLLDLHA--NVSAVTFHYGTSMDLIGAGSTPLHF---AACGG--  150 (431)
Q Consensus        82 ~~~~~~~in~~d~~G~TpLh~Aa~~g~----~e~VklLL~~Ga--dvn~~d~~~~~~~~~~~~G~TpLh~---Aa~~g--  150 (431)
                      .   +..+|.. ..|.||||+|+..++    .+++++|+++|+  +++..+..          |.||||.   |...+  
T Consensus       368 ~---GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~----------G~T~Lh~~i~a~~~n~~  433 (672)
T PHA02730        368 N---GATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNN----------GRLCMYGLILSRFNNCG  433 (672)
T ss_pred             C---CCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccC----------CCchHhHHHHHHhcccc
Confidence            2   2346765 789999999998875    899999999998  68888866          9999994   43332  


Q ss_pred             -------CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHH
Q 014068          151 -------NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARE  221 (431)
Q Consensus       151 -------~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~  221 (431)
                             ..+++++|+++||++|.+|..|+||||+|+..++.+++++| ..|++++..+..       .+.++++.|..
T Consensus       434 ~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~-------~g~TaL~~Aa~  505 (672)
T PHA02730        434 YHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRS-------IINTAIQKSSY  505 (672)
T ss_pred             ccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCc-------CCcCHHHHHHH
Confidence                   23579999999999999999999999999999999886555 556777665431       12377888765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=176.06  Aligned_cols=141  Identities=17%  Similarity=0.199  Sum_probs=118.3

Q ss_pred             cCCCCcccCCCCCchHHHHHHHhCCH----HHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccC
Q 014068           18 FRCNVTRADYLSGRTALHFAAVNGHV----RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA   93 (431)
Q Consensus        18 ~gadi~~~d~~~G~TpLh~Aa~~G~~----eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d   93 (431)
                      +|++++..+. ++.++||+|++.|+.    +++++|++++.                                 .++.+|
T Consensus         9 ~~~~~~~~~~-~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~---------------------------------~~~~~d   54 (166)
T PHA02743          9 NNLGAVEIDE-DEQNTFLRICRTGNIYELMEVAPFISGDGH---------------------------------LLHRYD   54 (166)
T ss_pred             cchHHhhhcc-CCCcHHHHHHHcCCHHHHHHHHHHHhhcch---------------------------------hhhccC
Confidence            5677877886 888999999999998    45555555433                                 278889


Q ss_pred             CCCchHHHHHHHcCCHHH---HHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-CCCCCcccC
Q 014068           94 DGGITALHMAALNGYFDC---VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLN  169 (431)
Q Consensus        94 ~~G~TpLh~Aa~~g~~e~---VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~-~GAdin~~d  169 (431)
                      ..|+||||+|+.+|+.+.   +++|+++|++++.++..         .|.||||+|+..|+.+++++|++ .|++++.+|
T Consensus        55 ~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~---------~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  125 (166)
T PHA02743         55 HHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG---------TGNTLLHIAASTKNYELAEWLCRQLGVNLGAIN  125 (166)
T ss_pred             CCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC---------CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcC
Confidence            999999999999998654   89999999999998742         29999999999999999999995 799999999


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCC
Q 014068          170 CNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPR  201 (431)
Q Consensus       170 ~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~  201 (431)
                      ..|+||||+|+..++.+++++|. .+++.+.+.
T Consensus       126 ~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  158 (166)
T PHA02743        126 YQHETAYHIAYKMRDRRMMEILRANGAVCDDPL  158 (166)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            99999999999999999876665 456655443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.87  E-value=1e-21  Score=188.34  Aligned_cols=151  Identities=26%  Similarity=0.280  Sum_probs=133.8

Q ss_pred             CEeeccCCHHHHHHHHHcC-CCCcccCCCCCchHHHHHHHh-----CCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChh
Q 014068            1 MQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVN-----GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS   74 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~g-adi~~~d~~~G~TpLh~Aa~~-----G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~   74 (431)
                      |||+.++++++|+.||+.| ++++..+. -|+||+++|+..     .+.++|..|+.-|.                    
T Consensus       273 HYsVSHaNF~VV~~LLDSgvC~VD~qNr-AGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--------------------  331 (452)
T KOG0514|consen  273 HYAVSHANFDVVSILLDSGVCDVDQQNR-AGYTPVMLAALAKLKQPADRTVVERLFKMGD--------------------  331 (452)
T ss_pred             eeeecccchHHHHHHhccCccccccccc-ccccHHHHHHHHhhcchhhHHHHHHHHhccC--------------------
Confidence            8999999999999999987 79999987 999999999853     35666777764322                    


Q ss_pred             hHHhhhhhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHH
Q 014068           75 SVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK  153 (431)
Q Consensus        75 ~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~e  153 (431)
                                    +|.+. ..|.|+|++|+.+|+.++|+.||..|||||.+|.+          |.|+|+.|+++||.|
T Consensus       332 --------------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD----------GSTALMCA~EHGhkE  387 (452)
T KOG0514|consen  332 --------------VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDD----------GSTALMCAAEHGHKE  387 (452)
T ss_pred             --------------cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCC----------ccHHHhhhhhhChHH
Confidence                          66664 57999999999999999999999999999999987          999999999999999


Q ss_pred             HHHHHHHC-CCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCC
Q 014068          154 CCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  196 (431)
Q Consensus       154 ivklLL~~-GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~  196 (431)
                      +|++||.. +.|+...|.+|-|+|++|...||.+|..+|..+-+
T Consensus       388 ivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n  431 (452)
T KOG0514|consen  388 IVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMN  431 (452)
T ss_pred             HHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHH
Confidence            99999987 89999999999999999999999999877765433

>PHA02792 ankyrin-like protein; Provisional

Probab=99.87  E-value=2.6e-21  Score=202.77  Aligned_cols=263  Identities=11%  Similarity=0.004  Sum_probs=185.6

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHH-hCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAV-NGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~-~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      +|..+|++|+|++|+++|||+|.++. .|.||||+|+. .|+.|++++|+++|++   ....|.+++.........-...
T Consensus        78 ~~s~n~~lElvk~LI~~GAdvN~~~n-~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~  156 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLEINSIKN-GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWD  156 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCCcccccC-CCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchh
Confidence            36788999999999999999999998 78999999976 7999999999999986   3455666655443332222222


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcC-------CHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNG-------YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  150 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g-------~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g  150 (431)
                      ...+.......+|..|..|.||||+|+.++       +.+++++|+++|++++..|..          |.||||+|+...
T Consensus       157 ~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~----------g~t~l~~~~~~~  226 (631)
T PHA02792        157 DELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYR----------EHTTLYYYVDKC  226 (631)
T ss_pred             hhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCC----------CChHHHHHHHcc
Confidence            222223334457889999999999999999       899999999999999999977          899999998655


Q ss_pred             --------------------------------------------------------------------------------
Q 014068          151 --------------------------------------------------------------------------------  150 (431)
Q Consensus       151 --------------------------------------------------------------------------------  150 (431)
                                                                                                      
T Consensus       227 ~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  306 (631)
T PHA02792        227 DIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSI  306 (631)
T ss_pred             cchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHH
Confidence                                                                                            


Q ss_pred             -------------CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHH
Q 014068          151 -------------NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVL  216 (431)
Q Consensus       151 -------------~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l  216 (431)
                                   +.+++++|+++|++++  ......+++.|+..|+.+++++|. .|++++..+..+.+  .    +++
T Consensus       307 q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~--~----TpL  378 (631)
T PHA02792        307 QDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIIN--I----MPL  378 (631)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCC--h----hHH
Confidence                         1266777777777764  223566788999999999876654 56776554433211  1    444


Q ss_pred             HHHHHcCCcc---cc---ccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCC
Q 014068          217 NVARECGLLS---ST---TSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPC  284 (431)
Q Consensus       217 ~~A~~~G~~~---~~---~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~C  284 (431)
                      +.|.......   +.   .....+...-.....+|+..|+.. ++...+++|+..|++.+..+..+.+|.+.+.
T Consensus       379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~-~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES-HSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            5443332211   11   000111111122335788888877 7888999999999999998888888776654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=1.5e-21  Score=175.65  Aligned_cols=129  Identities=25%  Similarity=0.284  Sum_probs=115.8

Q ss_pred             CEeeccCCH----HHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHH---HHHHHhcCCCCCCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHW----EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRC---IRLVVADFVPSVPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~----evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~ei---v~~LL~~~~~~~~~~~~~l~~a~~~~~~   73 (431)
                      |+||+.|++    +++++|++.|++++..|. .|+||||+|+..|+.+.   +++|++.++.                  
T Consensus        25 ~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~-~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad------------------   85 (166)
T PHA02743         25 LRICRTGNIYELMEVAPFISGDGHLLHRYDH-HGRQCTHMVAWYDRANAVMKIELLVNMGAD------------------   85 (166)
T ss_pred             HHHHHcCCHHHHHHHHHHHhhcchhhhccCC-CCCcHHHHHHHhCccCHHHHHHHHHHcCCC------------------
Confidence            568899998    666788889999998887 99999999999998654   7899987765                  


Q ss_pred             hhHHhhhhhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHH-CCCCCCcccccCCCccccCCCCCcHHHHHHhcCC
Q 014068           74 SSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN  151 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~-~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~  151 (431)
                                     +|.++ ..|.||||+|+..|+.+++++|++ .|++++.++..          |.||||+|+..++
T Consensus        86 ---------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~----------g~tpL~~A~~~~~  140 (166)
T PHA02743         86 ---------------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQ----------HETAYHIAYKMRD  140 (166)
T ss_pred             ---------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCC----------CCCHHHHHHHcCC
Confidence                           78887 589999999999999999999995 89999998866          9999999999999


Q ss_pred             HHHHHHHHHCCCCCcccCCCCC
Q 014068          152 LKCCQVLLSRGASRMSLNCNGW  173 (431)
Q Consensus       152 ~eivklLL~~GAdin~~d~~G~  173 (431)
                      .+++++|+++|++++..+..|.
T Consensus       141 ~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        141 RRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHHHHHcCCCCCCcccCCc
Confidence            9999999999999999988774

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.85  E-value=1.5e-21  Score=195.74  Aligned_cols=173  Identities=31%  Similarity=0.429  Sum_probs=155.1

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhh
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD   81 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~   81 (431)
                      .|+..|+.+-|..||..|++++..+. +|.|+||-++.-.+.+||++|+++++.                          
T Consensus        46 ~A~~~~d~~ev~~ll~~ga~~~~~n~-DglTalhq~~id~~~e~v~~l~e~ga~--------------------------   98 (527)
T KOG0505|consen   46 EACSRGDLEEVRKLLNRGASPNLCNV-DGLTALHQACIDDNLEMVKFLVENGAN--------------------------   98 (527)
T ss_pred             hccccccHHHHHHHhccCCCccccCC-ccchhHHHHHhcccHHHHHHHHHhcCC--------------------------
Confidence            47889999999999999999998887 999999999999999999999998775                          


Q ss_pred             hhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccC-------------------------
Q 014068           82 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI-------------------------  136 (431)
Q Consensus        82 ~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~-------------------------  136 (431)
                             ||..|..|+||||.|+.-||..++++|+.+|+++..++..++.+.++.                         
T Consensus        99 -------Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~  171 (527)
T KOG0505|consen   99 -------VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARK  171 (527)
T ss_pred             -------ccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhh
Confidence                   999999999999999999999999999999999999888877766544                         


Q ss_pred             ------------------------CCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-
Q 014068          137 ------------------------GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-  191 (431)
Q Consensus       137 ------------------------~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-  191 (431)
                                              ..|.|+||.|+.+|..++.++|+++|.+++++|.+||||||.|+.||+.++.++| 
T Consensus       172 ~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~  251 (527)
T KOG0505|consen  172 AEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLV  251 (527)
T ss_pred             hhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHH
Confidence                                    3489999999999999999999999999999999999999999999999986655 


Q ss_pred             cCCCCCCCCCCCCCCCC
Q 014068          192 APSSDAVMPRFHPSNYL  208 (431)
Q Consensus       192 ~~~a~~~~~~~~~~~~~  208 (431)
                      ..+++.+...+.+...+
T Consensus       252 ~~ga~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  252 EHGADMDAKTKMGETPL  268 (527)
T ss_pred             HhhcccchhhhcCCCCc
Confidence            55777777666655443

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1.1e-21  Score=176.79  Aligned_cols=199  Identities=22%  Similarity=0.167  Sum_probs=157.8

Q ss_pred             eeccCCHHHHHHHHHcCCCCc-ccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCC---CcchhhHhhhcCChhhHHh
Q 014068            3 ACRYGHWEVVQTLLLFRCNVT-RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKS   78 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~-~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~---~~~~l~~a~~~~~~~~~~~   78 (431)
                      |...|+.+++..++...++-+ ..+. +|+.++|.|+-.|+.+.++.+|.++...+..   +++++.+++..........
T Consensus        69 ~~~s~nsd~~v~s~~~~~~~~~~t~p-~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~  147 (296)
T KOG0502|consen   69 AVRSGNSDVAVQSAQLDPDAIDETDP-EGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDL  147 (296)
T ss_pred             hhhcCCcHHHHHhhccCCCCCCCCCc-hhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHH
Confidence            456788888888877665533 3444 7999999999999999999999877655544   4444444444333333222


Q ss_pred             hhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHH
Q 014068           79 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  158 (431)
Q Consensus        79 ~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklL  158 (431)
                      +.     ...+|..|+.|.|||++|+.+|++++|++||+.||+++...+.          ..|+|.+|...|..++|++|
T Consensus       148 ~~-----~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~----------resALsLAt~ggytdiV~lL  212 (296)
T KOG0502|consen  148 LV-----NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY----------RESALSLATRGGYTDIVELL  212 (296)
T ss_pred             Hh-----hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh----------hhhhHhHHhcCChHHHHHHH
Confidence            22     2348999999999999999999999999999999999998865          78999999999999999999


Q ss_pred             HHCCCCCcccCCCCCcHHHHHHHhCcHHHH-HHhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCc
Q 014068          159 LSRGASRMSLNCNGWLPLDVARMWGRHWLE-PLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL  225 (431)
Q Consensus       159 L~~GAdin~~d~~G~TpLh~Aa~~g~~~v~-~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~  225 (431)
                      |.++.|+|..|.+|.|||-||++.+|.+++ .||..|++++..+..+.        .+++.|...|++
T Consensus       213 L~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy--------~~mdlAValGyr  272 (296)
T KOG0502|consen  213 LTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGY--------WIMDLAVALGYR  272 (296)
T ss_pred             HhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCC--------cHHHHHHHhhhH
Confidence            999999999999999999999999998885 56677888766543322        567788777776

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=3.1e-21  Score=171.16  Aligned_cols=136  Identities=21%  Similarity=0.237  Sum_probs=108.0

Q ss_pred             cccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHH
Q 014068           23 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM  102 (431)
Q Consensus        23 ~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~  102 (431)
                      +..|. .|.||||+|+..|+  ++.+|+.....                          .......++.+|..|.||||+
T Consensus        11 ~~~d~-~g~tpLh~A~~~g~--~~~l~~~~~~~--------------------------~~~~~~~~~~~d~~g~t~Lh~   61 (154)
T PHA02736         11 SEPDI-EGENILHYLCRNGG--VTDLLAFKNAI--------------------------SDENRYLVLEYNRHGKQCVHI   61 (154)
T ss_pred             HhcCC-CCCCHHHHHHHhCC--HHHHHHHHHHh--------------------------cchhHHHHHHhcCCCCEEEEe
Confidence            44555 89999999999998  34444321110                          000011255678899999999


Q ss_pred             HHHcCCH---HHHHHHHHCCCCCCcccc-cCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHC-CCCCcccCCCCCcHHH
Q 014068          103 AALNGYF---DCVQLLLDLHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLD  177 (431)
Q Consensus       103 Aa~~g~~---e~VklLL~~Gadvn~~d~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~-GAdin~~d~~G~TpLh  177 (431)
                      |+..|+.   +++++|++.|++++.++. .          |.||||+|+..|+.+++++|+++ |++++.+|..|+||||
T Consensus        62 a~~~~~~~~~e~v~~Ll~~gadin~~~~~~----------g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         62 VSNPDKADPQEKLKLLMEWGADINGKERVF----------GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             ecccCchhHHHHHHHHHHcCCCccccCCCC----------CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence            9999987   468999999999999874 5          99999999999999999999984 9999999999999999


Q ss_pred             HHHHhCcHHHHHHhcC-CCCC
Q 014068          178 VARMWGRHWLEPLLAP-SSDA  197 (431)
Q Consensus       178 ~Aa~~g~~~v~~LL~~-~a~~  197 (431)
                      +|+..|+.+++++|.. +++.
T Consensus       132 ~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        132 VACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             HHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999776654 4443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.84  E-value=8.3e-20  Score=185.09  Aligned_cols=190  Identities=14%  Similarity=-0.036  Sum_probs=155.2

Q ss_pred             HHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC---------CCCcchhhHhhh--cCChhhHHhhh
Q 014068           12 VQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV---------PFEVMNTQIEGD--RGDGSSVKSKC   80 (431)
Q Consensus        12 Vk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~---------~~~~~~l~~a~~--~~~~~~~~~~~   80 (431)
                      -++++.+|+++|..+. +|     +|+..+..+++++|+++++..+         ....+.+|.++.  .+..+.++.++
T Consensus        65 ~~~~~~~~~~i~~~~~-~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         65 YDYFRIHRDNIDQYIV-DR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHcCcchhhhhh-hh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            4788999999998886 66     9999999999999999988754         456789999888  78888888888


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccC-CCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI-GAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~-~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                      .++.   +++.  .++.||||.|+..|+.++|++|+++|++......     ..+. ..|.|++|.|+..++.+++++|+
T Consensus       139 ~~GA---DIn~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~-----~~l~~~~~~t~l~~a~~~~~~eIve~LI  208 (437)
T PHA02795        139 DHGA---VIYK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVK-----LDLYKIIQYTRGFLVDEPTVLEIYKLCI  208 (437)
T ss_pred             HCCC---CCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCccccccc-----chhhhhhccchhHHHHhcCHHHHHHHHH
Confidence            7765   3554  3568999999999999999999999985432210     0000 13789999999999999999999


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCc
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL  225 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~  225 (431)
                      ++||++|.+|..|.||||+|+..|+.+++++| ..|++++.....+.        |++++|...|..
T Consensus       209 s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~--------TpLh~Aa~~g~~  267 (437)
T PHA02795        209 PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGY--------TCLDVAVDRGSV  267 (437)
T ss_pred             hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC--------CHHHHHHHcCCc
Confidence            99999999999999999999999999986555 56777777655433        899999998853

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.83  E-value=5.1e-21  Score=197.78  Aligned_cols=254  Identities=24%  Similarity=0.247  Sum_probs=188.2

Q ss_pred             EeeccCCHHHHHHHHHcC-------------CCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhh
Q 014068            2 QACRYGHWEVVQTLLLFR-------------CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG   68 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~g-------------adi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~   68 (431)
                      .|+..|+++.|..||+..             .++|..|. +|.|+||+|+.+|+.+++++|+++.+.             
T Consensus         9 ~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~-~gfTalhha~Lng~~~is~llle~ea~-------------   74 (854)
T KOG0507|consen    9 DACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDY-SGFTLLHHAVLNGQNQISKLLLDYEAL-------------   74 (854)
T ss_pred             HhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCc-cchhHHHHHHhcCchHHHHHHhcchhh-------------
Confidence            378899999999999851             24566776 999999999999999999999976432             


Q ss_pred             hcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHh
Q 014068           69 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  148 (431)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~  148 (431)
                                          ++..|..|.+|||+|++.|+.++|++||..+..+|..+..          |.||||.|++
T Consensus        75 --------------------ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e----------~~tplhlaaq  124 (854)
T KOG0507|consen   75 --------------------LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIE----------NETPLHLAAQ  124 (854)
T ss_pred             --------------------hhhhhccCcceEEehhhcCcchHHHHHHhcccCCCccccc----------CcCccchhhh
Confidence                                6677788999999999999999999999999888888866          9999999999


Q ss_pred             cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCCCCCCC--CCCCCCCchhhhhHHHHHHHcCCcc
Q 014068          149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPR--FHPSNYLSLPLLSVLNVARECGLLS  226 (431)
Q Consensus       149 ~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~~~~~--~~~~~~~~~~l~t~l~~A~~~G~~~  226 (431)
                      .|+.+++.+|+++|+|+-.+|+.+.|+|.+|++.|..+|+++|+.. +..+..  ..+......+..+.+|.|.++|+.+
T Consensus       125 hgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~  203 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVE  203 (854)
T ss_pred             hcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhcccCCCCCCCCCCcCCcchhhhcchHH
Confidence            9999999999999999999999999999999999999999888766 322221  1113333455678899999999877


Q ss_pred             ccccCC-CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCC---CCCCcccccccccceecCCC
Q 014068          227 STTSSS-DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPG---SIPCPLCRHGIVSFTKLPGS  300 (431)
Q Consensus       227 ~~~a~~-~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~---~~~CP~Cr~~I~~~~~l~~~  300 (431)
                      ...... .+.+.-..-..-.....+.-||-..||++||+.|-+..+...-+-+..   +-.=+.=+.+|.++++++..
T Consensus       204 ~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~~~~  281 (854)
T KOG0507|consen  204 CMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKNFEQ  281 (854)
T ss_pred             HHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhcccc
Confidence            665321 111111111122344566678999999999999987654443211111   00111234466666666654

>PHA02792 ankyrin-like protein; Provisional

Probab=99.83  E-value=2e-19  Score=188.56  Aligned_cols=205  Identities=12%  Similarity=-0.049  Sum_probs=147.4

Q ss_pred             CEeec-cCCHHHHHHHHHcCCCCcc-----------------------------------cCCCCCchHHHHHHHhC---
Q 014068            1 MQACR-YGHWEVVQTLLLFRCNVTR-----------------------------------ADYLSGRTALHFAAVNG---   41 (431)
Q Consensus         1 H~Aa~-~G~~evVk~LL~~gadi~~-----------------------------------~d~~~G~TpLh~Aa~~G---   41 (431)
                      |+|+. .|+.|+|++||++||+++.                                   .++..|.||||+|+.++   
T Consensus       110 ~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~  189 (631)
T PHA02792        110 KYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQD  189 (631)
T ss_pred             eEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcc
Confidence            46654 6888999999988887421                                   11225888999998888   


Q ss_pred             ----CHHHHHHHHhcCCCC---CCCCcchhhHhhhcC--ChhhHHhhhhhhh----------------h-------h---
Q 014068           42 ----HVRCIRLVVADFVPS---VPFEVMNTQIEGDRG--DGSSVKSKCDQSA----------------L-------S---   86 (431)
Q Consensus        42 ----~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~--~~~~~~~~~~~~~----------------~-------~---   86 (431)
                          +.+++++|+++|+..   +..+.+++|.++...  ..+.++.+.....                +       .   
T Consensus       190 ~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~i  269 (631)
T PHA02792        190 GYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYI  269 (631)
T ss_pred             cccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHH
Confidence                788999999887654   556788888887776  3333333321100                0       0   


Q ss_pred             --------------------------------------------------------hh----hcccCCCCchHHHHHHHc
Q 014068           87 --------------------------------------------------------KF----VNKAADGGITALHMAALN  106 (431)
Q Consensus        87 --------------------------------------------------------~~----in~~d~~G~TpLh~Aa~~  106 (431)
                                                                              ..    .+.....+...+|.||..
T Consensus       270 v~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~  349 (631)
T PHA02792        270 VDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDN  349 (631)
T ss_pred             HHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHc
Confidence                                                                    00    111111355678999999


Q ss_pred             CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCH---HHHHHHHHCCCCCcccCCCCCcHHHHHHHhC
Q 014068          107 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL---KCCQVLLSRGASRMSLNCNGWLPLDVARMWG  183 (431)
Q Consensus       107 g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~---eivklLL~~GAdin~~d~~G~TpLh~Aa~~g  183 (431)
                      |+.++|++|+++||+++..|.+        +.+.||||+|+..+..   +++++|+++||++|.+|..|+||||+|+..+
T Consensus       350 gn~eIVelLIs~GADIN~kD~~--------g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~  421 (631)
T PHA02792        350 RDPKVVEYILKNGNVVVEDDDN--------IINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESH  421 (631)
T ss_pred             CCHHHHHHHHHcCCchhhhcCC--------CCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcC
Confidence            9999999999999999998865        2357999998877665   4689999999999999999999999999999


Q ss_pred             cHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHH
Q 014068          184 RHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARE  221 (431)
Q Consensus       184 ~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~  221 (431)
                      +.+++++| ..+++++.....+.        |++++|..
T Consensus       422 n~eivelLLs~GADIN~kD~~G~--------TpL~~A~~  452 (631)
T PHA02792        422 SVSLVEWLIDNGADINITTKYGS--------TCIGICVI  452 (631)
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCC--------CHHHHHHH
Confidence            99987655 55677666544433        55666544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=5.8e-21  Score=172.04  Aligned_cols=134  Identities=27%  Similarity=0.433  Sum_probs=108.1

Q ss_pred             CCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHH
Q 014068           21 NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL  100 (431)
Q Consensus        21 di~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpL  100 (431)
                      .+|..|. .|.|||.||+..||+.+|++||+.|++                                 ++...+...|+|
T Consensus       152 ~VN~~De-~GfTpLiWAaa~G~i~vV~fLL~~GAd---------------------------------p~~lgk~resAL  197 (296)
T KOG0502|consen  152 KVNACDE-FGFTPLIWAAAKGHIPVVQFLLNSGAD---------------------------------PDALGKYRESAL  197 (296)
T ss_pred             cccCccc-cCchHhHHHHhcCchHHHHHHHHcCCC---------------------------------hhhhhhhhhhhH
Confidence            3444444 555555555555555555555555443                                 445556678999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q 014068          101 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  180 (431)
Q Consensus       101 h~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa  180 (431)
                      .+|...|+.++|++||+.+.|+|..|.+          |-|||-||+..|+.++|+.||+.||+++..+..|++++.+|+
T Consensus       198 sLAt~ggytdiV~lLL~r~vdVNvyDwN----------GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  198 SLATRGGYTDIVELLLTREVDVNVYDWN----------GGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             hHHhcCChHHHHHHHHhcCCCcceeccC----------CCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence            9999999999999999999999999998          999999999999999999999999999999999999999999


Q ss_pred             HhCcHHHHHHhcCCCCCC
Q 014068          181 MWGRHWLEPLLAPSSDAV  198 (431)
Q Consensus       181 ~~g~~~v~~LL~~~a~~~  198 (431)
                      ..|+..+.+.|.+.....
T Consensus       268 alGyr~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  268 ALGYRIVQQVIEKHALKL  285 (296)
T ss_pred             HhhhHHHHHHHHHHHHHH
Confidence            999986666665554433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=6.1e-20  Score=159.97  Aligned_cols=146  Identities=26%  Similarity=0.194  Sum_probs=120.7

Q ss_pred             HHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHH
Q 014068           33 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV  112 (431)
Q Consensus        33 pLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~V  112 (431)
                      -+.+|+..+....|+.||+..+.                                .+|.+|.+|+||||-|+.+||.++|
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an--------------------------------~vNtrD~D~YTpLHRAaYn~h~div  113 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKAN--------------------------------HVNTRDEDEYTPLHRAAYNGHLDIV  113 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccc--------------------------------cccccccccccHHHHHHhcCchHHH
Confidence            45788999999999988865332                                2899999999999999999999999


Q ss_pred             HHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHH-HHHh
Q 014068          113 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL-EPLL  191 (431)
Q Consensus       113 klLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v-~~LL  191 (431)
                      +.|+..||+++++...          |+||||-|+.+++.+++-+||++|+|+|++....+||||+|+...+..+ +.+|
T Consensus       114 ~~ll~~gAn~~a~T~~----------GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~L  183 (228)
T KOG0512|consen  114 HELLLSGANKEAKTNE----------GWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELL  183 (228)
T ss_pred             HHHHHccCCccccccc----------CccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHH
Confidence            9999999999999977          9999999999999999999999999999999999999999999887543 6666


Q ss_pred             cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcc
Q 014068          192 APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLS  226 (431)
Q Consensus       192 ~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~  226 (431)
                      +....+........      .-+++.+|+..|...
T Consensus       184 l~dryi~pg~~nn~------eeta~~iARRT~~s~  212 (228)
T KOG0512|consen  184 LHDRYIHPGLKNNL------EETAFDIARRTSMSH  212 (228)
T ss_pred             hhccccChhhhcCc------cchHHHHHHHhhhhH
Confidence            55444433322222      227888888876543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=4.6e-20  Score=204.48  Aligned_cols=140  Identities=23%  Similarity=0.250  Sum_probs=126.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+||..|+.++|++|+++|++++.+|. +|+||||+|+..||.+++++|++.+..                         
T Consensus       563 h~Aa~~g~~~~v~~Ll~~gadin~~d~-~G~TpL~~A~~~g~~~iv~~L~~~~~~-------------------------  616 (823)
T PLN03192        563 HIAASKGYEDCVLVLLKHACNVHIRDA-NGNTALWNAISAKHHKIFRILYHFASI-------------------------  616 (823)
T ss_pred             HHHHHcChHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHHhCCHHHHHHHHhcCcc-------------------------
Confidence            789999999999999999999999998 999999999999999999999965332                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                                .....|.++||+|+.+|+.+++++|+++|+++|..|.+          |.||||+|+..|+.+++++|++
T Consensus       617 ----------~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        617 ----------SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQ----------GATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             ----------cCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCcHHHHHHHHH
Confidence                      11234679999999999999999999999999999976          9999999999999999999999


Q ss_pred             CCCCCcccCCCC-CcHHHHHHHhCcHH
Q 014068          161 RGASRMSLNCNG-WLPLDVARMWGRHW  186 (431)
Q Consensus       161 ~GAdin~~d~~G-~TpLh~Aa~~g~~~  186 (431)
                      +||+++..|..| .||++++......+
T Consensus       677 ~GAdv~~~~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        677 NGADVDKANTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             cCCCCCCCCCCCCCCHHHHHHHHHHhh
Confidence            999999999988 99999987755444

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=8.4e-20  Score=178.06  Aligned_cols=129  Identities=20%  Similarity=0.171  Sum_probs=111.1

Q ss_pred             CcccCCCCCch-HHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhccc----CCCC
Q 014068           22 VTRADYLSGRT-ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA----ADGG   96 (431)
Q Consensus        22 i~~~d~~~G~T-pLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~----d~~G   96 (431)
                      +..+|. .|+| +||.|+..|+.+++++|+++|++                                 +|.+    +..|
T Consensus        25 ~~~~d~-~~~~~lL~~A~~~~~~eivk~LL~~GAd---------------------------------iN~~~~~sd~~g   70 (300)
T PHA02884         25 IKKKNK-ICIANILYSSIKFHYTDIIDAILKLGAD---------------------------------PEAPFPLSENSK   70 (300)
T ss_pred             hhccCc-CCCCHHHHHHHHcCCHHHHHHHHHCCCC---------------------------------ccccCcccCCCC
Confidence            444565 5554 66777788999999999999886                                 5554    4689


Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q 014068           97 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL  176 (431)
Q Consensus        97 ~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpL  176 (431)
                      .||||+|+..|+.+++++|+++||+++..+..         .|.||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus        71 ~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~---------~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL  141 (300)
T PHA02884         71 TNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE---------AKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPI  141 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC---------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            99999999999999999999999999986432         299999999999999999999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHhcC
Q 014068          177 DVARMWGRHWLEPLLAP  193 (431)
Q Consensus       177 h~Aa~~g~~~v~~LL~~  193 (431)
                      |+|+..++.+++.++..
T Consensus       142 ~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        142 ELALMICNNFLAFMICD  158 (300)
T ss_pred             HHHHHhCChhHHHHhcC
Confidence            99999999888776653

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=5.4e-20  Score=160.30  Aligned_cols=139  Identities=30%  Similarity=0.244  Sum_probs=123.2

Q ss_pred             EeeccCCHHHHHHHHHcCCC-CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            2 QACRYGHWEVVQTLLLFRCN-VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gad-i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      +|+..|.+..|+.||+..++ +|.+|. +|+||||-|+++||.+||+.|+..++.                         
T Consensus        69 waae~nrl~eV~~lL~e~an~vNtrD~-D~YTpLHRAaYn~h~div~~ll~~gAn-------------------------  122 (228)
T KOG0512|consen   69 WAAEKNRLTEVQRLLSEKANHVNTRDE-DEYTPLHRAAYNGHLDIVHELLLSGAN-------------------------  122 (228)
T ss_pred             HHHhhccHHHHHHHHHhcccccccccc-ccccHHHHHHhcCchHHHHHHHHccCC-------------------------
Confidence            57888999999999998877 788887 999999999999999999999987775                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHH-HHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK-CCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~e-ivklLL  159 (431)
                              .+.+...|+||||-|+..++.+++-+||++|+|||+....          ..||||+|+...+.. .+.+|+
T Consensus       123 --------~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g----------~ltpLhlaa~~rn~r~t~~~Ll  184 (228)
T KOG0512|consen  123 --------KEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKG----------LLTPLHLAAGNRNSRDTLELLL  184 (228)
T ss_pred             --------cccccccCccchhhhhcccchhHHHHHHhccCcccccccc----------cchhhHHhhcccchHHHHHHHh
Confidence                    7788889999999999999999999999999999999865          889999999877754 455555


Q ss_pred             H-CCCCCcccCCCCCcHHHHHHHhCc
Q 014068          160 S-RGASRMSLNCNGWLPLDVARMWGR  184 (431)
Q Consensus       160 ~-~GAdin~~d~~G~TpLh~Aa~~g~  184 (431)
                      . .++++..++..+.||+++|.+-+-
T Consensus       185 ~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  185 HDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hccccChhhhcCccchHHHHHHHhhh
Confidence            4 588888999999999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.9e-19  Score=175.58  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=122.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccC---CCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRAD---YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d---~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |.|+..|+.++|++|+++|++++..+   ...|.||||+|+..|+.+++++|+++|++                      
T Consensus        38 ~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD----------------------   95 (300)
T PHA02884         38 YSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD----------------------   95 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------
Confidence            45788899999999999999999874   23899999999999999999999998876                      


Q ss_pred             hhhhhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           78 SKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                                 +|.++ ..|.||||+|+..|+.+++++|+++|++++.++..          |.||||+|+..++.+++.
T Consensus        96 -----------VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~----------G~TpL~~A~~~~~~~~~~  154 (300)
T PHA02884         96 -----------VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTND----------MVTPIELALMICNNFLAF  154 (300)
T ss_pred             -----------cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHhCChhHHH
Confidence                       88864 57999999999999999999999999999999976          999999999999999886


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      ++.  |..   .+..+.+|++++   ++.+++++|..+
T Consensus       155 ~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish  184 (300)
T PHA02884        155 MIC--DNE---ISNFYKHPKKIL---INFDILKILVSH  184 (300)
T ss_pred             Hhc--CCc---ccccccChhhhh---ccHHHHHHHHHH
Confidence            665  332   466778898875   366776666544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=2.3e-20  Score=187.26  Aligned_cols=169  Identities=30%  Similarity=0.336  Sum_probs=135.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhh---------
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEG---------   68 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~---------   68 (431)
                      |.++...+.+||++|+++|++||..|. .||||||.|+..||..++++|+.+++..   +..+..+..++.         
T Consensus        78 hq~~id~~~e~v~~l~e~ga~Vn~~d~-e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~  156 (527)
T KOG0505|consen   78 HQACIDDNLEMVKFLVENGANVNAQDN-EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLE  156 (527)
T ss_pred             HHHHhcccHHHHHHHHHhcCCcccccc-ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHH
Confidence            678899999999999999999999998 9999999999999999999999876632   222222222111         


Q ss_pred             ---hcCChhhHHhhh------------hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcc
Q 014068           69 ---DRGDGSSVKSKC------------DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM  133 (431)
Q Consensus        69 ---~~~~~~~~~~~~------------~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~  133 (431)
                         ...... +....            .........+..+..|.|.||.|+.+|+.++.++||++|.+++.+|.+     
T Consensus       157 ~~~~r~gi~-iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d-----  230 (527)
T KOG0505|consen  157 TEMARQGID-IEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD-----  230 (527)
T ss_pred             HHHHHhccc-HHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc-----
Confidence               111111 10000            000112235666667999999999999999999999999999999987     


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH
Q 014068          134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM  181 (431)
Q Consensus       134 ~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~  181 (431)
                           |+||||.|+.+|+.+++++|+++|++++..+..|.|||.+|..
T Consensus       231 -----gWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  231 -----GWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             -----CCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence                 9999999999999999999999999999999999999999987

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=1.3e-19  Score=163.57  Aligned_cols=121  Identities=20%  Similarity=0.239  Sum_probs=108.3

Q ss_pred             CEeeccCCHHHHHHHHH------cCCCCcccCCCCCchHHHHHHHhCC----HHHHHHHHhcCCCCCCCCcchhhHhhhc
Q 014068            1 MQACRYGHWEVVQTLLL------FRCNVTRADYLSGRTALHFAAVNGH----VRCIRLVVADFVPSVPFEVMNTQIEGDR   70 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~------~gadi~~~d~~~G~TpLh~Aa~~G~----~eiv~~LL~~~~~~~~~~~~~l~~a~~~   70 (431)
                      |+|+..|+.++|++|+.      .|++++.+|. .|+||||+|+..|+    .+++++|++.++.               
T Consensus        26 h~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~-~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---------------   89 (169)
T PHA02741         26 HEAARCGCFDIIARFTPFIRGDCHAAALNATDD-AGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---------------   89 (169)
T ss_pred             HHHHHcCCHHHHHHHHHHhccchhhhhhhccCC-CCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---------------
Confidence            68999999999999864      3688999997 99999999999999    5888999977654               


Q ss_pred             CChhhHHhhhhhhhhhhhhcccCC-CCchHHHHHHHcCCHHHHHHHHH-CCCCCCcccccCCCccccCCCCCcHHHHHHh
Q 014068           71 GDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  148 (431)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~e~VklLL~-~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~  148 (431)
                                        +|.++. .|.||||+|+..++.+++++|++ .|++++..+..          |.||||+|+.
T Consensus        90 ------------------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~----------g~tpL~~A~~  141 (169)
T PHA02741         90 ------------------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNAD----------NKSPFELAID  141 (169)
T ss_pred             ------------------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC----------CCCHHHHHHH
Confidence                              778775 89999999999999999999998 59999998876          9999999999


Q ss_pred             cCCHHHHHHHHHCCCCC
Q 014068          149 GGNLKCCQVLLSRGASR  165 (431)
Q Consensus       149 ~g~~eivklLL~~GAdi  165 (431)
                      .|+.+++++|+++++..
T Consensus       142 ~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        142 NEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999987654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.81  E-value=3e-20  Score=192.18  Aligned_cols=198  Identities=21%  Similarity=0.218  Sum_probs=154.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC---CCCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV---PSVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~---~~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+.+|+.++++.|+++.+-++..|. .|.+|||+|+++|+.++++.|+.+..   .....+.+++|.++..++.+++.
T Consensus        54 hha~Lng~~~is~llle~ea~ldl~d~-kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~  132 (854)
T KOG0507|consen   54 HHAVLNGQNQISKLLLDYEALLDLCDT-KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVF  132 (854)
T ss_pred             HHHHhcCchHHHHHHhcchhhhhhhhc-cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHH
Confidence            789999999999999999999999996 99999999999999999999997654   33455777888888888888888


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      +++..+.-   .-.+|+.+.|+|-+|++.|..++|+.|+.....+...+.. + .+-..-.+.+|||+|+++|+.++++.
T Consensus       133 ~Ll~~~ad---p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~-~-~~~~~~~~~~plHlaakngh~~~~~~  207 (854)
T KOG0507|consen  133 YLLKKNAD---PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRV-G-DIKRPFPAIYPLHLAAKNGHVECMQA  207 (854)
T ss_pred             HHHhcCCC---ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccC-C-CCCCCCCCcCCcchhhhcchHHHHHH
Confidence            77766553   3456677888888888888888888888764333221111 1 00000247899999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCC
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPS  205 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~  205 (431)
                      |++.|.|+|.....| |+||.|+..|..+++.+| ..+....+.+.+++
T Consensus       208 ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~q  255 (854)
T KOG0507|consen  208 LLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQ  255 (854)
T ss_pred             HHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccch
Confidence            999999999998888 999999999999986555 44555555544433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=9.1e-20  Score=170.14  Aligned_cols=121  Identities=37%  Similarity=0.455  Sum_probs=113.1

Q ss_pred             HcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCC
Q 014068           17 LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG   96 (431)
Q Consensus        17 ~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G   96 (431)
                      +..-|+|.-|+ .|.+|||||++.||..+++.|+..|+.                                 +|..+...
T Consensus        22 ~tehdln~gdd-hgfsplhwaakegh~aivemll~rgar---------------------------------vn~tnmgd   67 (448)
T KOG0195|consen   22 DTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGAR---------------------------------VNSTNMGD   67 (448)
T ss_pred             Ccccccccccc-cCcchhhhhhhcccHHHHHHHHhcccc---------------------------------cccccCCC
Confidence            45677888887 999999999999999999999988775                                 88888888


Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q 014068           97 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL  176 (431)
Q Consensus        97 ~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpL  176 (431)
                      .||||+||.+||.++|+.||+..+|+|+.+.+          |+||||||+..|...+++-|+..||.+++.|++|.|||
T Consensus        68 dtplhlaaahghrdivqkll~~kadvnavneh----------gntplhyacfwgydqiaedli~~ga~v~icnk~g~tpl  137 (448)
T KOG0195|consen   68 DTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH----------GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPL  137 (448)
T ss_pred             CcchhhhhhcccHHHHHHHHHHhcccchhhcc----------CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCch
Confidence            99999999999999999999999999999977          99999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 014068          177 DVARM  181 (431)
Q Consensus       177 h~Aa~  181 (431)
                      ..|--
T Consensus       138 dkakp  142 (448)
T KOG0195|consen  138 DKAKP  142 (448)
T ss_pred             hhhch
Confidence            98754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=8.2e-19  Score=155.60  Aligned_cols=120  Identities=19%  Similarity=0.244  Sum_probs=100.1

Q ss_pred             CEeeccCCHHHHHHHHHcCC--C-----CcccCCCCCchHHHHHHHhCCHH---HHHHHHhcCCCCCCCCcchhhHhhhc
Q 014068            1 MQACRYGHWEVVQTLLLFRC--N-----VTRADYLSGRTALHFAAVNGHVR---CIRLVVADFVPSVPFEVMNTQIEGDR   70 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~ga--d-----i~~~d~~~G~TpLh~Aa~~G~~e---iv~~LL~~~~~~~~~~~~~l~~a~~~   70 (431)
                      |+|+..|++  +.+|+..+.  +     ++..|. .|+||||+|+..|+.+   ++++|++.++.               
T Consensus        22 h~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---------------   83 (154)
T PHA02736         22 HYLCRNGGV--TDLLAFKNAISDENRYLVLEYNR-HGKQCVHIVSNPDKADPQEKLKLLMEWGAD---------------   83 (154)
T ss_pred             HHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcC-CCCEEEEeecccCchhHHHHHHHHHHcCCC---------------
Confidence            789999984  333333322  2     233565 8999999999999874   68889987665               


Q ss_pred             CChhhHHhhhhhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHH-CCCCCCcccccCCCccccCCCCCcHHHHHHh
Q 014068           71 GDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  148 (431)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~-~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~  148 (431)
                                        ++.++ ..|.||||+|+..|+.+++++|+. .|++++..+..          |.||||+|+.
T Consensus        84 ------------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~----------g~tpL~~A~~  135 (154)
T PHA02736         84 ------------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYA----------FKTPYYVACE  135 (154)
T ss_pred             ------------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCC----------CCCHHHHHHH
Confidence                              78887 489999999999999999999998 49999998876          9999999999


Q ss_pred             cCCHHHHHHHHHCCCCCc
Q 014068          149 GGNLKCCQVLLSRGASRM  166 (431)
Q Consensus       149 ~g~~eivklLL~~GAdin  166 (431)
                      .|+.+++++|+++|++.+
T Consensus       136 ~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        136 RHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cCCHHHHHHHHHcCCCCC
Confidence            999999999999999875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.75  E-value=1e-17  Score=134.32  Aligned_cols=89  Identities=39%  Similarity=0.567  Sum_probs=79.1

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHH
Q 014068           34 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ  113 (431)
Q Consensus        34 Lh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~Vk  113 (431)
                      ||+|++.|+.+++++|++.+..                                 ++.    |.||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---------------------------------~~~----~~~~l~~A~~~~~~~~~~   43 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---------------------------------INL----GNTALHYAAENGNLEIVK   43 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---------------------------------TTS----SSBHHHHHHHTTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---------------------------------CCC----CCCHHHHHHHcCCHHHHH
Confidence            8999999999999999975432                                 333    889999999999999999


Q ss_pred             HHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccC
Q 014068          114 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN  169 (431)
Q Consensus       114 lLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d  169 (431)
                      +|+++|++++..+..          |+||||+|+..|+.+++++|+++|++++.+|
T Consensus        44 ~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   44 LLLENGADINSQDKN----------GNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTTCTT-BSTT----------SSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHHhcccccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999866          9999999999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=2.9e-18  Score=188.53  Aligned_cols=174  Identities=24%  Similarity=0.212  Sum_probs=138.8

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHh---CCHHHHHHHHhcCCC-------------CCCCCcchhh
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVP-------------SVPFEVMNTQ   65 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~---G~~eiv~~LL~~~~~-------------~~~~~~~~l~   65 (431)
                      .|+.+++.++++.|+++|+    .+. .|.||||+|+.+   +...+++++......             ....+.+++|
T Consensus        59 ~A~~~~~~eiv~lLl~~g~----~~~-~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLh  133 (743)
T TIGR00870        59 AAIENENLELTELLLNLSC----RGA-VGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALH  133 (743)
T ss_pred             HHHhcChHHHHHHHHhCCC----CCC-cChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHH
Confidence            6888999999999999987    444 899999999973   223344444433321             1245889999


Q ss_pred             HhhhcCChhhHHhhhhhhhhhhhhcccC--------------CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCC
Q 014068           66 IEGDRGDGSSVKSKCDQSALSKFVNKAA--------------DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT  131 (431)
Q Consensus        66 ~a~~~~~~~~~~~~~~~~~~~~~in~~d--------------~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~  131 (431)
                      +|+..++.+.++.++..+.   .++.++              ..|.||||+|+..|+.+++++|+++|+|++..|..   
T Consensus       134 lAa~~~~~eiVklLL~~GA---dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~---  207 (743)
T TIGR00870       134 LAAHRQNYEIVKLLLERGA---SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSL---  207 (743)
T ss_pred             HHHHhCCHHHHHHHHhCCC---CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhh---
Confidence            9999999999999987653   233332              35899999999999999999999999999999976   


Q ss_pred             ccccCCCCCcHHHHHHhcC---------CHHHHHHHHHCCCCC-------cccCCCCCcHHHHHHHhCcHHHHHHhcC
Q 014068          132 SMDLIGAGSTPLHFAACGG---------NLKCCQVLLSRGASR-------MSLNCNGWLPLDVARMWGRHWLEPLLAP  193 (431)
Q Consensus       132 ~~~~~~~G~TpLh~Aa~~g---------~~eivklLL~~GAdi-------n~~d~~G~TpLh~Aa~~g~~~v~~LL~~  193 (431)
                             |+||||+|+..+         ...+.+++++.++..       +..|.+|.||||+|+..|+.+++++|++
T Consensus       208 -------g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       208 -------GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             -------hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence                   999999999987         234667777766554       6779999999999999999999887776

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=4.5e-17  Score=136.38  Aligned_cols=121  Identities=40%  Similarity=0.581  Sum_probs=112.0

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.||||+|+..|+.+++++|++.+..                                 .+..+..|.||||+|+..++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~---------------------------------~~~~~~~g~~~l~~a~~~~~   52 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGAD---------------------------------VNAKDNDGRTPLHLAAKNGH   52 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCccCCCCCcHHHHHHHcCC
Confidence            799999999999999999999987654                                 36778889999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .+++++|++.|++++..+..          |.||+|+|+..++.+++++|+++|.+++..|..|.|||++|...++.+++
T Consensus        53 ~~~~~~ll~~~~~~~~~~~~----------~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  122 (126)
T cd00204          53 LEIVKLLLEKGADVNARDKD----------GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV  122 (126)
T ss_pred             HHHHHHHHHcCCCccccCCC----------CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHH
Confidence            99999999999988887755          89999999999999999999999999999999999999999999999998


Q ss_pred             HHhc
Q 014068          189 PLLA  192 (431)
Q Consensus       189 ~LL~  192 (431)
                      ++|.
T Consensus       123 ~~Ll  126 (126)
T cd00204         123 KLLL  126 (126)
T ss_pred             HHhC
Confidence            8773

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.71  E-value=1.8e-17  Score=176.03  Aligned_cols=264  Identities=18%  Similarity=0.156  Sum_probs=168.0

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC----CCCCCCcchhhHhhhcCChhhHH
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV----PSVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~----~~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      .|+..||.|+|.+|+.+|+++..+|. .|.+||.+|+-.||..+|+.|+.+.+    ..+..+.+.+.+++..+..+.+.
T Consensus       763 ~acaggh~e~vellv~rganiehrdk-kgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vve  841 (2131)
T KOG4369|consen  763 SACAGGHREEVELLVVRGANIEHRDK-KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVE  841 (2131)
T ss_pred             ccccCccHHHHHHHHHhccccccccc-ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHH
Confidence            58899999999999999999999997 99999999999999999999996544    34566777788888888888777


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCC--Ccc----------------------
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG--TSM----------------------  133 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~--~~~----------------------  133 (431)
                      .++..+.-+.   .++...+|||-+|...|+.++|+.||..|+.||.+....-  .++                      
T Consensus       842 lLl~~ganke---hrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdi  918 (2131)
T KOG4369|consen  842 LLLNAGANKE---HRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDI  918 (2131)
T ss_pred             HHHHhhcccc---ccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchh
Confidence            7766544322   2233345666666666666666666666666655542200  000                      


Q ss_pred             --ccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHH-HHHhcCCCCCCCCCCCCCCCCch
Q 014068          134 --DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL-EPLLAPSSDAVMPRFHPSNYLSL  210 (431)
Q Consensus       134 --~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v-~~LL~~~a~~~~~~~~~~~~~~~  210 (431)
                        .+.-.-+|+|-+|+..|..++|.+||.+.+++..+-+.|.|||+-++..|..+| ..||..++|.+.......     
T Consensus       919 NaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T-----  993 (2131)
T KOG4369|consen  919 NAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNT-----  993 (2131)
T ss_pred             ccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCc-----
Confidence              000124455555555555666666666666666666677777777777777777 344455666554332211     


Q ss_pred             hhhhHHHHHHHcCCccccccCCCCCchhhhhhccc---cchhccCCChHHHHHHHHHhhhcCCCCCCCC
Q 014068          211 PLLSVLNVARECGLLSSTTSSSDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMV  276 (431)
Q Consensus       211 ~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~---~~va~~~CgH~~C~~cll~~ga~~n~~~~~~  276 (431)
                       .-+++.++++.|+...+....++.....+=..+.   +-.++.+ ||...+..|++.++++...+...
T Consensus       994 -~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~G-g~lss~~il~~~~ad~d~qdnr~ 1060 (2131)
T KOG4369|consen  994 -WDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAG-GALSSCPILVSSVADADQQDNRT 1060 (2131)
T ss_pred             -CCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccC-CccccchHHhhcccChhhhhccc
Confidence             1156777888888777764444322222222223   3345555 78777788888888875555433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=2.4e-17  Score=132.20  Aligned_cols=88  Identities=35%  Similarity=0.514  Sum_probs=79.7

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+||+.|+++++++|++.+.+++.     |.||||+|+..|+.+++++|++++.+                         
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~-------------------------   51 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD-------------------------   51 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc-------------------------
Confidence            679999999999999999988876     78999999999999999999988765                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccc
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT  126 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d  126 (431)
                              ++.+|..|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus        52 --------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   52 --------INSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             --------TT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             --------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence                    78888999999999999999999999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.70  E-value=7e-18  Score=179.08  Aligned_cols=250  Identities=22%  Similarity=0.215  Sum_probs=180.9

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHHh
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKS   78 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~~   78 (431)
                      +|+-.||..+|+.|+.+-++++...+..+.|+|-+|+..|+.++|++||..++..   +..+.+++.++...+...++..
T Consensus       796 maatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~  875 (2131)
T KOG4369|consen  796 MAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHA  875 (2131)
T ss_pred             hhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHH
Confidence            5778889999999999888888776668889999999999999999999876644   3446678888888888888887


Q ss_pred             hhhhhhhhhhhcccC--CCCchHHHHHHHcCCHHHHHHHHHCCCCCCccc-ccCCCccccC-------------------
Q 014068           79 KCDQSALSKFVNKAA--DGGITALHMAALNGYFDCVQLLLDLHANVSAVT-FHYGTSMDLI-------------------  136 (431)
Q Consensus        79 ~~~~~~~~~~in~~d--~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d-~~~~~~~~~~-------------------  136 (431)
                      ++..+.   .||.+.  +.|..||++|+.+||.+.++.||+.|.|+|+.- .+..+.+-+.                   
T Consensus       876 llS~Gs---eInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anv  952 (2131)
T KOG4369|consen  876 LLSSGS---EINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANV  952 (2131)
T ss_pred             Hhhccc---ccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhh
Confidence            776653   255544  568888888888888888888888888887632 1222222111                   


Q ss_pred             ----CCCCcHHHHHHhcCCHHHHHHHHHCCCCCccc--CCCCCcHHHHHHHhCcHHHHHHhcC-CCCCCCCCCCCCCCCc
Q 014068          137 ----GAGSTPLHFAACGGNLKCCQVLLSRGASRMSL--NCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLS  209 (431)
Q Consensus       137 ----~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~--d~~G~TpLh~Aa~~g~~~v~~LL~~-~a~~~~~~~~~~~~~~  209 (431)
                          ..|-|||+-++..|.+++=++||.+|||+|.-  -..-.|+|-+++..||...+.+|+. .+.+.++++.+.    
T Consensus       953 ehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~---- 1028 (2131)
T KOG4369|consen  953 EHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGC---- 1028 (2131)
T ss_pred             hhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCC----
Confidence                45999999999999999999999999999865  3445599999999999888766555 566677766655    


Q ss_pred             hhhhhHHHHHHHcCCccccccCCCCC-ch-hhhhhccccch-hccCCChHHHHHHHH
Q 014068          210 LPLLSVLNVARECGLLSSTTSSSDDA-DT-CAVCLERACTV-AAEGCRHELCVRCAL  263 (431)
Q Consensus       210 ~~l~t~l~~A~~~G~~~~~~a~~~~~-~~-C~vcle~~~~v-a~~~CgH~~C~~cll  263 (431)
                          ++|-+|..-|+........+.. +. ---|..-.+++ +.+. ||..||+...
T Consensus      1029 ----T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRK-gh~~iVk~mv 1080 (2131)
T KOG4369|consen 1029 ----TVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRK-GHFAIVKKMV 1080 (2131)
T ss_pred             ----cccchhccCCccccchHHhhcccChhhhhcccccccHHHHHh-chhheecccc
Confidence                6777888777765544221111 10 11122234444 4455 9988887764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.68  E-value=7.6e-17  Score=150.71  Aligned_cols=133  Identities=29%  Similarity=0.370  Sum_probs=113.4

Q ss_pred             hhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCc
Q 014068           87 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  166 (431)
Q Consensus        87 ~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin  166 (431)
                      .++|.-|+.|.+|||+|++.|+..+|+.||..|+.+|..+..          ..||||+|+..|+-++|+.||+..+|+|
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmg----------ddtplhlaaahghrdivqkll~~kadvn   94 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMG----------DDTPLHLAAAHGHRDIVQKLLSRKADVN   94 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCC----------CCcchhhhhhcccHHHHHHHHHHhcccc
Confidence            458899999999999999999999999999999999998864          7799999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHhCcHHH-HHHhcCCCCCCCCCCCCCCCCchh----hhhHHHHHHHcCCccccc
Q 014068          167 SLNCNGWLPLDVARMWGRHWL-EPLLAPSSDAVMPRFHPSNYLSLP----LLSVLNVARECGLLSSTT  229 (431)
Q Consensus       167 ~~d~~G~TpLh~Aa~~g~~~v-~~LL~~~a~~~~~~~~~~~~~~~~----l~t~l~~A~~~G~~~~~~  229 (431)
                      +.|..|+||||||+.+|...| ..|+..++.+++-++.+...+...    -.+.+.+|.+.|......
T Consensus        95 avnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen   95 AVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             hhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCcc
Confidence            999999999999999999888 678888999888766555433311    235677788887654443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=8.6e-16  Score=161.18  Aligned_cols=183  Identities=27%  Similarity=0.292  Sum_probs=135.1

Q ss_pred             eeccCCHHHHHHHHHcC---------CCCcccCCCCCchHHHHHHH---hCCHHHHHHHHhcCCCCCCCCcchhhHhhhc
Q 014068            3 ACRYGHWEVVQTLLLFR---------CNVTRADYLSGRTALHFAAV---NGHVRCIRLVVADFVPSVPFEVMNTQIEGDR   70 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~g---------adi~~~d~~~G~TpLh~Aa~---~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~   70 (431)
                      |...|..+.+..|+..+         .+++.+.. .|.|.||.|..   .++.++++.|++-..                
T Consensus       108 ~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa-~GET~Lh~~lL~~~~~~n~la~~LL~~~p----------------  170 (782)
T KOG3676|consen  108 ADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGA-TGETLLHKALLNLSDGHNELARVLLEIFP----------------  170 (782)
T ss_pred             ccccccHHHHhccchhhhhhhhhhhhhccccccc-hhhhHHHHHHhcCchhHHHHHHHHHHHhH----------------
Confidence            45566667776666654         56777766 89999999997   456789999996311                


Q ss_pred             CChhhHHhhhhhhhhhhhhcc----cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccccc------CC-Cc------c
Q 014068           71 GDGSSVKSKCDQSALSKFVNK----AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH------YG-TS------M  133 (431)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~in~----~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~------~~-~~------~  133 (431)
                                      ..+|.    ..-.|.||||+|+.+.+.++|++||+.||||+++..-      +. ..      -
T Consensus       171 ----------------~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~  234 (782)
T KOG3676|consen  171 ----------------KLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYT  234 (782)
T ss_pred             ----------------HHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCc
Confidence                            11111    1236999999999999999999999999999986421      00 01      0


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHH-HhcCCCC--CCCCCCCCCCCCch
Q 014068          134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP-LLAPSSD--AVMPRFHPSNYLSL  210 (431)
Q Consensus       134 ~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~-LL~~~a~--~~~~~~~~~~~~~~  210 (431)
                      ..+--|..||-+||.-++.+++++|+++|||++++|.+|+|.||..+..-..+|.. +|..+++  ..+.+        .
T Consensus       235 G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N--------~  306 (782)
T KOG3676|consen  235 GYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRN--------N  306 (782)
T ss_pred             ceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccc--------c
Confidence            01124899999999999999999999999999999999999999999987777754 4455555  22222        2


Q ss_pred             hhhhHHHHHHHcCCcc
Q 014068          211 PLLSVLNVARECGLLS  226 (431)
Q Consensus       211 ~l~t~l~~A~~~G~~~  226 (431)
                      .++|++.+|+..|..+
T Consensus       307 qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  307 QGLTPLTLAAKLGKKE  322 (782)
T ss_pred             CCCChHHHHHHhhhHH
Confidence            2457888888877655

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.63  E-value=1.3e-15  Score=159.98  Aligned_cols=169  Identities=24%  Similarity=0.202  Sum_probs=131.0

Q ss_pred             eccCCHHHHHHHHHcCC----CCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhh
Q 014068            4 CRYGHWEVVQTLLLFRC----NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         4 a~~G~~evVk~LL~~ga----di~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      ...++-++++.||+.-.    |+-..+...|.||||+|+.+.+.++|++|++.|++....-......+-......     
T Consensus       154 ~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~r-----  228 (782)
T KOG3676|consen  154 LSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASR-----  228 (782)
T ss_pred             CchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccc-----
Confidence            35677799999998643    233344458999999999999999999999988874322211111100000000     


Q ss_pred             hhhhhhhhhhccc--CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           80 CDQSALSKFVNKA--ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        80 ~~~~~~~~~in~~--d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                             ..-|..  --.|..||-+||.-+++|+|++|+++|||++++|.+          |+|.||.-+..-..++.++
T Consensus       229 -------k~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~----------GNTVLH~lVi~~~~~My~~  291 (782)
T KOG3676|consen  229 -------KSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSN----------GNTVLHMLVIHFVTEMYDL  291 (782)
T ss_pred             -------cccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccC----------CChHHHHHHHHHHHHHHHH
Confidence                   001111  124889999999999999999999999999999987          9999999999999999999


Q ss_pred             HHHCCCC--CcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          158 LLSRGAS--RMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       158 LL~~GAd--in~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      +|++|++  ..++|+.|.|||.+|++.|+.+|.+.+++.
T Consensus       292 ~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  292 ALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999999  889999999999999999999997666655

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.60  E-value=8.3e-15  Score=122.52  Aligned_cols=115  Identities=43%  Similarity=0.598  Sum_probs=104.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.+++++|++++.+.+..+. .|.||||+|+..++.+++++|+..+..                         
T Consensus        12 ~~a~~~~~~~~i~~li~~~~~~~~~~~-~g~~~l~~a~~~~~~~~~~~ll~~~~~-------------------------   65 (126)
T cd00204          12 HLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLLLEKGAD-------------------------   65 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            578899999999999999999888887 999999999999999999999986542                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                              ++..+..|.||+|+|+..++.+++++|+++|.+++..+..          |.|||++|+..++.+++++|+
T Consensus        66 --------~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          66 --------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD----------GRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             --------ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHhcCCHHHHHHhC
Confidence                    5667788999999999999999999999999888888865          999999999999999999985

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=1.4e-14  Score=133.53  Aligned_cols=124  Identities=38%  Similarity=0.463  Sum_probs=112.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .+.+++|+|+..+..+++++|+..+..                                 ++.++..|.||||+|+.+|+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------~~~~~~~g~t~l~~a~~~~~  118 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGAD---------------------------------VNAKDADGDTPLHLAALNGN  118 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------cccccCCCCcHHHHHHhcCC
Confidence            688999999999999999999987665                                 78899999999999999999


Q ss_pred             -----HHHHHHHHHCCC---CCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q 014068          109 -----FDCVQLLLDLHA---NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  180 (431)
Q Consensus       109 -----~e~VklLL~~Ga---dvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa  180 (431)
                           .+++++||+.|+   ..+..+..          |.||||+|+..|+.+++++|++.|++++..+..|.|+|++|.
T Consensus       119 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~----------g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~  188 (235)
T COG0666         119 PPEGNIEVAKLLLEAGADLDVNNLRDED----------GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA  188 (235)
T ss_pred             cccchHHHHHHHHHcCCCCCCccccCCC----------CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhc
Confidence                 999999999999   44454655          999999999999999999999999999999999999999999


Q ss_pred             HhCcHHHHHHhcCCC
Q 014068          181 MWGRHWLEPLLAPSS  195 (431)
Q Consensus       181 ~~g~~~v~~LL~~~a  195 (431)
                      ..++..++.+|....
T Consensus       189 ~~~~~~~~~~l~~~~  203 (235)
T COG0666         189 KNGRIELVKLLLDKG  203 (235)
T ss_pred             ccchHHHHHHHHhcC
Confidence            999999987776643

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=4.5e-15  Score=116.81  Aligned_cols=93  Identities=27%  Similarity=0.322  Sum_probs=85.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      +|++++|.++-|+..+..|-|+|..-  .|+||||||+-.|+.+++++|+..|+.                         
T Consensus         7 ~W~vkNG~~DeVk~~v~~g~nVn~~~--ggR~plhyAAD~GQl~ilefli~iGA~-------------------------   59 (117)
T KOG4214|consen    7 AWNVKNGEIDEVKQSVNEGLNVNEIY--GGRTPLHYAADYGQLSILEFLISIGAN-------------------------   59 (117)
T ss_pred             hhhhccCcHHHHHHHHHccccHHHHh--CCcccchHhhhcchHHHHHHHHHhccc-------------------------
Confidence            47889999999999999998888664  799999999999999999999988775                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccccc
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH  128 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~  128 (431)
                              ++.+|+.|.|||.-|+..||.++|++||++||+-.....+
T Consensus        60 --------i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~Pd   99 (117)
T KOG4214|consen   60 --------IQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPD   99 (117)
T ss_pred             --------cCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCC
Confidence                    8999999999999999999999999999999998877755

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=9.6e-15  Score=134.55  Aligned_cols=121  Identities=34%  Similarity=0.435  Sum_probs=109.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCC-----HHHHHHHHhcCCCCCCCCcchhhHhhhcCChhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH-----VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS   75 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~-----~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~   75 (431)
                      |.|+..+..+++++|+..|++++..+. .|.||||+|+..|+     .+++++|++.+..                    
T Consensus        78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~--------------------  136 (235)
T COG0666          78 HSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD--------------------  136 (235)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCcccccC-CCCcHHHHHHhcCCcccchHHHHHHHHHcCCC--------------------
Confidence            346677899999999999999988887 99999999999999     9999999988762                    


Q ss_pred             HHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHH
Q 014068           76 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC  155 (431)
Q Consensus        76 ~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv  155 (431)
                                ....+.+|..|.||||+|+..|+.+++++|++.|++++..+..          |.|+|++|+..++.+++
T Consensus       137 ----------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~----------g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         137 ----------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY----------GVTALDPAAKNGRIELV  196 (235)
T ss_pred             ----------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccC----------CCcchhhhcccchHHHH
Confidence                      1126677999999999999999999999999999999998765          99999999999999999


Q ss_pred             HHHHHCC
Q 014068          156 QVLLSRG  162 (431)
Q Consensus       156 klLL~~G  162 (431)
                      ++|++.+
T Consensus       197 ~~l~~~~  203 (235)
T COG0666         197 KLLLDKG  203 (235)
T ss_pred             HHHHhcC
Confidence            9999976

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.56  E-value=2.3e-14  Score=112.84  Aligned_cols=113  Identities=27%  Similarity=0.399  Sum_probs=91.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHH
Q 014068           32 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  111 (431)
Q Consensus        32 TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  111 (431)
                      --+.|++++|..+-|+-.+..+..                                 +|..- .|+||||+||..|+.++
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~n---------------------------------Vn~~~-ggR~plhyAAD~GQl~i   49 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLN---------------------------------VNEIY-GGRTPLHYAADYGQLSI   49 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHcccc---------------------------------HHHHh-CCcccchHhhhcchHHH
Confidence            346788888888888877754322                                 33332 68999999999999999


Q ss_pred             HHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh
Q 014068          112 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  191 (431)
Q Consensus       112 VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL  191 (431)
                      +++|+..||+++..|+.          |-|||.-|+..||..+|++||++||+......+|.+.+..+-   +.+|.+||
T Consensus        50 lefli~iGA~i~~kDKy----------gITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate---~edIr~LL  116 (117)
T KOG4214|consen   50 LEFLISIGANIQDKDKY----------GITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATE---EEDIRELL  116 (117)
T ss_pred             HHHHHHhccccCCcccc----------CCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhcc---HHHHHHHh
Confidence            99999999999999987          999999999999999999999999999988888877665432   34555554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=1.9e-13  Score=128.01  Aligned_cols=124  Identities=28%  Similarity=0.382  Sum_probs=109.0

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  109 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  109 (431)
                      -..||..|+-.|..+-...||+.                                 ...+|.+|..|+|+|..|+..|+.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~---------------------------------vr~vn~~D~sGMs~LahAaykGnl   58 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST---------------------------------VRQVNQRDPSGMSVLAHAAYKGNL   58 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH---------------------------------hhhhhccCCCcccHHHHHHhcCcH
Confidence            35688888888888888888842                                 122899999999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 014068          110 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  189 (431)
Q Consensus       110 e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~  189 (431)
                      ++|++||+.|+|+|....         +.+.||||+|+..|+.++.++|++.|+.+...|.-|+|+-.+|+.-|+.+.+.
T Consensus        59 ~~v~lll~~gaDvN~~qh---------g~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   59 TLVELLLELGADVNDKQH---------GTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             HHHHHHHHhCCCcCcccc---------cccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHH
Confidence            999999999999997553         35999999999999999999999999999999999999999999999988877


Q ss_pred             HhcCCC
Q 014068          190 LLAPSS  195 (431)
Q Consensus       190 LL~~~a  195 (431)
                      .+.+.-
T Consensus       130 iINN~~  135 (396)
T KOG1710|consen  130 IINNHI  135 (396)
T ss_pred             HHhccc
Confidence            765543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.47  E-value=2.2e-13  Score=147.67  Aligned_cols=106  Identities=26%  Similarity=0.296  Sum_probs=97.8

Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHH
Q 014068           32 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  111 (431)
Q Consensus        32 TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  111 (431)
                      +.|+.|+..|+.+++++|++.++.                                 +|.+|..|.||||+|+.+|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad---------------------------------in~~d~~G~TpLh~Aa~~g~~ei  130 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD---------------------------------PNCRDYDGRTPLHIACANGHVQV  130 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCcHHHHHHHCCCHHH
Confidence            458899999999999999987665                                 78889999999999999999999


Q ss_pred             HHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHC-------CCCCcccCCCCCcHHHHHH
Q 014068          112 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-------GASRMSLNCNGWLPLDVAR  180 (431)
Q Consensus       112 VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~-------GAdin~~d~~G~TpLh~Aa  180 (431)
                      |++|+++|++++..|..          |.||||+|+..|+.+++++|+++       |++++..+..|.+|+..+.
T Consensus       131 v~~LL~~Gadvn~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        131 VRVLLEFGADPTLLDKD----------GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999999976          99999999999999999999999       9999999998888877665

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=6.4e-14  Score=102.70  Aligned_cols=55  Identities=38%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             HHHCC-CCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHH
Q 014068          115 LLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  179 (431)
Q Consensus       115 LL~~G-advn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~A  179 (431)
                      ||++| ++++..|..          |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~----------G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKY----------GNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TT----------S--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCC----------CCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 899999977          99999999999999999999999999999999999999997

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=6.6e-13  Score=96.46  Aligned_cols=54  Identities=44%  Similarity=0.660  Sum_probs=46.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        96 G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                      |.||||+|+..|+.+++++|+++|++++.+|.+          |.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~----------g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDED----------GRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TT----------S--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999866          999999999999999999996

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=6.6e-13  Score=96.44  Aligned_cols=54  Identities=37%  Similarity=0.504  Sum_probs=46.1

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       139 G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                      |+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999998874

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=2.4e-12  Score=139.52  Aligned_cols=87  Identities=30%  Similarity=0.384  Sum_probs=82.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHH
Q 014068           98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD  177 (431)
Q Consensus        98 TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh  177 (431)
                      +.|+.|+..|+.+.|++|++.|+++|..|..          |.||||+|+.+|+.+++++|+++|++++.+|..|+||||
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~----------G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh  153 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYD----------GRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLE  153 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------CCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            4689999999999999999999999999876          999999999999999999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHhcCC
Q 014068          178 VARMWGRHWLEPLLAPS  194 (431)
Q Consensus       178 ~Aa~~g~~~v~~LL~~~  194 (431)
                      +|+..|+.+++++|+..
T Consensus       154 ~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322        154 LAEENGFREVVQLLSRH  170 (664)
T ss_pred             HHHHCCcHHHHHHHHhC
Confidence            99999999998888664

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.4e-12  Score=130.67  Aligned_cols=117  Identities=28%  Similarity=0.379  Sum_probs=97.0

Q ss_pred             HHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHH
Q 014068           34 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ  113 (431)
Q Consensus        34 Lh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~Vk  113 (431)
                      |.-|+..|-+++|+-.+....+                                 ....++.|.|+||-|+..||++||+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D---------------------------------pSqpNdEGITaLHNAiCaghyeIVk  600 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD---------------------------------PSQPNDEGITALHNAICAGHYEIVK  600 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC---------------------------------CCCCCccchhHHhhhhhcchhHHHH
Confidence            3457788888888877744222                                 5667889999999999999999999


Q ss_pred             HHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccC-CCCCcHHHHHHH--hCcHHHHHH
Q 014068          114 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN-CNGWLPLDVARM--WGRHWLEPL  190 (431)
Q Consensus       114 lLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d-~~G~TpLh~Aa~--~g~~~v~~L  190 (431)
                      +||+.|++||+.|.+          ||||||.|+..+++.+++.|++.|+-+-+.. .++.||..-.-.  .|...+.++
T Consensus       601 FLi~~ganVNa~DSd----------GWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~Csqy  670 (752)
T KOG0515|consen  601 FLIEFGANVNAADSD----------GWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQY  670 (752)
T ss_pred             HHHhcCCcccCccCC----------CCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHH
Confidence            999999999999977          9999999999999999999999999886654 677888776543  566777777


Q ss_pred             hcC
Q 014068          191 LAP  193 (431)
Q Consensus       191 L~~  193 (431)
                      |..
T Consensus       671 L~~  673 (752)
T KOG0515|consen  671 LYG  673 (752)
T ss_pred             HHH
Confidence            753

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.29  E-value=3.1e-12  Score=93.71  Aligned_cols=55  Identities=36%  Similarity=0.486  Sum_probs=32.3

Q ss_pred             HHHcC-CCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccC
Q 014068           15 LLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA   93 (431)
Q Consensus        15 LL~~g-adi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d   93 (431)
                      ||++| ++++..|. .|.||||+|+..|+.+++++|++.+..                                 ++.+|
T Consensus         1 LL~~~~~~~n~~d~-~G~T~LH~A~~~g~~~~v~~Ll~~g~d---------------------------------~~~~d   46 (56)
T PF13857_consen    1 LLEHGPADVNAQDK-YGNTPLHWAARYGHSEVVRLLLQNGAD---------------------------------PNAKD   46 (56)
T ss_dssp             -----T--TT---T-TS--HHHHHHHHT-HHHHHHHHHCT-----------------------------------TT---
T ss_pred             CCccCcCCCcCcCC-CCCcHHHHHHHcCcHHHHHHHHHCcCC---------------------------------CCCCc
Confidence            67888 89999997 999999999999999999999977654                                 89999


Q ss_pred             CCCchHHHHH
Q 014068           94 DGGITALHMA  103 (431)
Q Consensus        94 ~~G~TpLh~A  103 (431)
                      ..|+||||+|
T Consensus        47 ~~G~Tpl~~A   56 (56)
T PF13857_consen   47 KDGQTPLHYA   56 (56)
T ss_dssp             TTS--HHHH-
T ss_pred             CCCCCHHHhC
Confidence            9999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.26  E-value=2.2e-11  Score=114.36  Aligned_cols=114  Identities=30%  Similarity=0.310  Sum_probs=100.7

Q ss_pred             eeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhh
Q 014068            3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ   82 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~   82 (431)
                      |+-.|+.+....||+.--++|..|. +|.|+|..|+..|+.++|++||+.|++                           
T Consensus        19 ~i~Kndt~~a~~LLs~vr~vn~~D~-sGMs~LahAaykGnl~~v~lll~~gaD---------------------------   70 (396)
T KOG1710|consen   19 AIDKNDTEAALALLSTVRQVNQRDP-SGMSVLAHAAYKGNLTLVELLLELGAD---------------------------   70 (396)
T ss_pred             HHccCcHHHHHHHHHHhhhhhccCC-CcccHHHHHHhcCcHHHHHHHHHhCCC---------------------------
Confidence            3456788888899987667899998 999999999999999999999998876                           


Q ss_pred             hhhhhhhcc-cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           83 SALSKFVNK-AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        83 ~~~~~~in~-~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                            +|. .+..+.||||+||..|+.++.++||+.|+.....+.-          |+|+-.+|+.-|+.++|..+-.
T Consensus        71 ------vN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsv----------grTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   71 ------VNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSV----------GRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             ------cCcccccccccHHHHHHHcCCchHHHHHHhccCccccccch----------hhhHHHHHHHhcchHHHHHHhc
Confidence                  443 4567999999999999999999999999999988866          9999999999999999987644

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=1.6e-11  Score=123.24  Aligned_cols=115  Identities=27%  Similarity=0.282  Sum_probs=101.3

Q ss_pred             eeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhh
Q 014068            3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ   82 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~   82 (431)
                      |+..|.+|+|+..+..--|+...++ .|-|+||-|+-.||.+||++|++.++.                           
T Consensus       557 aaLeGEldlVq~~i~ev~DpSqpNd-EGITaLHNAiCaghyeIVkFLi~~gan---------------------------  608 (752)
T KOG0515|consen  557 AALEGELDLVQRIIYEVTDPSQPND-EGITALHNAICAGHYEIVKFLIEFGAN---------------------------  608 (752)
T ss_pred             hhhcchHHHHHHHHHhhcCCCCCCc-cchhHHhhhhhcchhHHHHHHHhcCCc---------------------------
Confidence            6788999999999998888888887 999999999999999999999988775                           


Q ss_pred             hhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHH--HhcCCHHHHHHHHH
Q 014068           83 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVLLS  160 (431)
Q Consensus        83 ~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~A--a~~g~~eivklLL~  160 (431)
                            +|..|.+||||||.||.-+++.+++.|++.|+-|-+.+..         ++.|+..-.  .+.|..++.+||-.
T Consensus       609 ------VNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlS---------DmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  609 ------VNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLS---------DMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             ------ccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecc---------cccchhhhcchhhhhHHHHHHHHHH
Confidence                  9999999999999999999999999999999988776643         477887654  35688889999864

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.00  E-value=2.1e-10  Score=120.38  Aligned_cols=88  Identities=30%  Similarity=0.315  Sum_probs=83.0

Q ss_pred             hhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCc
Q 014068           87 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  166 (431)
Q Consensus        87 ~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin  166 (431)
                      .+.|.+|..|+|+||+|+..|..+++++||++|++++.+|..         .|+||||.|+..|+++++-+||++|+.+.
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E---------SG~taLHRaiyyG~idca~lLL~~g~SL~  113 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE---------SGYTALHRAIYYGNIDCASLLLSKGRSLR  113 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc---------ccchHhhHhhhhchHHHHHHHHhcCCceE
Confidence            348999999999999999999999999999999999999976         69999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHhC
Q 014068          167 SLNCNGWLPLDVARMWG  183 (431)
Q Consensus       167 ~~d~~G~TpLh~Aa~~g  183 (431)
                      .+|++|..||.+-.+-.
T Consensus       114 i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  114 IKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             EecccCCCHHHHHhhcc
Confidence            99999999999988743

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.98  E-value=2.2e-09  Score=107.24  Aligned_cols=90  Identities=32%  Similarity=0.419  Sum_probs=82.0

Q ss_pred             hcccCCCCchH------HHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCC
Q 014068           89 VNKAADGGITA------LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  162 (431)
Q Consensus        89 in~~d~~G~Tp------Lh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~G  162 (431)
                      ...+|++|.|.      ||..++.|+.+..-.||..||++|..+.+         .|.||||.|++.|+.--+++|+-+|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe---------kg~TpLHvAAk~Gq~~Q~ElL~vYG  190 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE---------KGNTPLHVAAKAGQILQAELLAVYG  190 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc---------cCCchhHHHHhccchhhhhHHhhcc
Confidence            45667777664      89999999999999999999999998876         5999999999999999999999999


Q ss_pred             CCCcccCCCCCcHHHHHHHhCcHHH
Q 014068          163 ASRMSLNCNGWLPLDVARMWGRHWL  187 (431)
Q Consensus       163 Adin~~d~~G~TpLh~Aa~~g~~~v  187 (431)
                      ||+++.|.+|+||+.+|...||.++
T Consensus       191 AD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  191 ADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             CCCCCCCCCCCcHHHHHHhcCchHH
Confidence            9999999999999999999998765

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.82  E-value=2.8e-09  Score=106.13  Aligned_cols=96  Identities=20%  Similarity=0.257  Sum_probs=88.2

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHC-CCCCcccCC
Q 014068           92 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNC  170 (431)
Q Consensus        92 ~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~-GAdin~~d~  170 (431)
                      ++.++.-.+++|+..|++..++.+.-.|.|++..|.+          .+|+||.||..|+++++++||+. +.+++.+|.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD----------~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR  571 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYD----------DRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR  571 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccc----------cchhheeecccCceeHHHHHHHHHcCCCChhhc
Confidence            3445678999999999999999999899999999987          99999999999999999999996 999999999


Q ss_pred             CCCcHHHHHHHhCcHHHHHHhcCCCCC
Q 014068          171 NGWLPLDVARMWGRHWLEPLLAPSSDA  197 (431)
Q Consensus       171 ~G~TpLh~Aa~~g~~~v~~LL~~~a~~  197 (431)
                      .|+|||.-|...+|.+++++|.+...+
T Consensus       572 w~rtPlDdA~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  572 WGRTPLDDAKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             cCCCcchHhHhcCcHHHHHHHHHHhcc
Confidence            999999999999999999999876553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.76  E-value=2.1e-08  Score=101.63  Aligned_cols=117  Identities=25%  Similarity=0.232  Sum_probs=100.9

Q ss_pred             eeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhh
Q 014068            3 ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ   82 (431)
Q Consensus         3 Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~   82 (431)
                      |+..+++-.++.+...|.++..++. +..|.||||+..|+-++|+|||+++..                           
T Consensus       873 av~~~D~~klqE~h~~gg~ll~~~~-~~~sllh~a~~tg~~eivkyildh~p~---------------------------  924 (1004)
T KOG0782|consen  873 AVLSSDLMKLQETHLNGGSLLIQGP-DHCSLLHYAAKTGNGEIVKYILDHGPS---------------------------  924 (1004)
T ss_pred             HHHhccHHHHHHHHhcCCceEeeCc-chhhHHHHHHhcCChHHHHHHHhcCCH---------------------------
Confidence            4455555556666667888888887 889999999999999999999987553                           


Q ss_pred             hhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHC
Q 014068           83 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  161 (431)
Q Consensus        83 ~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~  161 (431)
                          .++++.|..|.|+||.|+..++..+.++|++.|+.+-..|..          |.||-..|-+.|+.+++.||-.+
T Consensus       925 ----elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~k----------g~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  925 ----ELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSK----------GKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             ----HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccC----------CCChHHHHHhcCCchHHHHHhhh
Confidence                236788889999999999999999999999999999998876          99999999999999999999764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.70  E-value=2e-08  Score=63.67  Aligned_cols=29  Identities=45%  Similarity=0.733  Sum_probs=27.8

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHCCCCCcc
Q 014068          139 GSTPLHFAACGGNLKCCQVLLSRGASRMS  167 (431)
Q Consensus       139 G~TpLh~Aa~~g~~eivklLL~~GAdin~  167 (431)
                      |+||||+|+..|+.++|++||++|+|+|.
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            89999999999999999999999999974

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2e-08  Score=63.60  Aligned_cols=30  Identities=47%  Similarity=0.641  Sum_probs=28.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCc
Q 014068           95 GGITALHMAALNGYFDCVQLLLDLHANVSA  124 (431)
Q Consensus        95 ~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~  124 (431)
                      +|+||||+|+..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999974

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.69  E-value=2.6e-08  Score=64.54  Aligned_cols=32  Identities=38%  Similarity=0.576  Sum_probs=30.7

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHCCCCCcccCC
Q 014068          139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNC  170 (431)
Q Consensus       139 G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~  170 (431)
                      |.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            89999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=5.9e-08  Score=98.52  Aligned_cols=99  Identities=28%  Similarity=0.337  Sum_probs=87.1

Q ss_pred             hcccCCCCchHHHHHHHcCCHHHHHHHHHCCCC--CCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCc
Q 014068           89 VNKAADGGITALHMAALNGYFDCVQLLLDLHAN--VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  166 (431)
Q Consensus        89 in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gad--vn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin  166 (431)
                      +-.++.+..|.||+|+..|+-++|+|||++|..  ++..+..          |.|+||-|+..++-.++++|++.||.+.
T Consensus       892 ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~----------get~lhkaa~~~~r~vc~~lvdagasl~  961 (1004)
T KOG0782|consen  892 LLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADET----------GETALHKAACQRNRAVCQLLVDAGASLR  961 (1004)
T ss_pred             eEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhh----------hhHHHHHHHHhcchHHHHHHHhcchhhe
Confidence            445666778999999999999999999999864  3444433          9999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHhcCCCCC
Q 014068          167 SLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  197 (431)
Q Consensus       167 ~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~  197 (431)
                      ..|..|.||-.-|-..|..++..+|......
T Consensus       962 ktd~kg~tp~eraqqa~d~dlaayle~rq~y  992 (1004)
T KOG0782|consen  962 KTDSKGKTPQERAQQAGDPDLAAYLESRQNY  992 (1004)
T ss_pred             ecccCCCChHHHHHhcCCchHHHHHhhhhch
Confidence            9999999999999999999999999765543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.65  E-value=1.6e-08  Score=100.90  Aligned_cols=87  Identities=26%  Similarity=0.331  Sum_probs=78.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|++.|++..++.+.-.|.|++.+|+ +.+|+||.||..|+.+++++|++..                           
T Consensus       511 ~~aa~~GD~~alrRf~l~g~D~~~~Dy-D~RTaLHvAAaEG~v~v~kfl~~~~---------------------------  562 (622)
T KOG0506|consen  511 MYAAKNGDLSALRRFALQGMDLETKDY-DDRTALHVAAAEGHVEVVKFLLNAC---------------------------  562 (622)
T ss_pred             hhhhhcCCHHHHHHHHHhccccccccc-ccchhheeecccCceeHHHHHHHHH---------------------------
Confidence            689999999999999999999999998 9999999999999999999999631                           


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  120 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Ga  120 (431)
                           +...+.+|..|+|||.-|...+|.+++++|-+.-.
T Consensus       563 -----kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  563 -----KVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             -----cCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence                 22378899999999999999999999999987644

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.63  E-value=4.7e-08  Score=63.31  Aligned_cols=32  Identities=44%  Similarity=0.494  Sum_probs=30.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccc
Q 014068           95 GGITALHMAALNGYFDCVQLLLDLHANVSAVT  126 (431)
Q Consensus        95 ~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d  126 (431)
                      +|.||||+|+..|+.++|++||++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58999999999999999999999999999877

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=1.4e-07  Score=95.60  Aligned_cols=81  Identities=30%  Similarity=0.391  Sum_probs=69.9

Q ss_pred             hHHHHHHHcCCHHHHHHHH--HCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcH
Q 014068           98 TALHMAALNGYFDCVQLLL--DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  175 (431)
Q Consensus        98 TpLh~Aa~~g~~e~VklLL--~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~Tp  175 (431)
                      -|||+++.....+-+..++  +.+..++.+|..          |+||||+|+..|+.+.++.|+.+||++..+|++||+|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~----------g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP----------GRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSP   91 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCC----------CCccHHHHHHhcCHHHHHHHHhcCCCccccccccccH
Confidence            4699999888776666543  345677778876          9999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcHHHH
Q 014068          176 LDVARMWGRHWLE  188 (431)
Q Consensus       176 Lh~Aa~~g~~~v~  188 (431)
                      ||.|+..|+..++
T Consensus        92 L~EAv~~g~~q~i  104 (560)
T KOG0522|consen   92 LHEAVSTGNEQII  104 (560)
T ss_pred             HHHHHHcCCHHHH
Confidence            9999999997653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.54  E-value=1.7e-07  Score=95.56  Aligned_cols=92  Identities=26%  Similarity=0.224  Sum_probs=78.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCC--cccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcH
Q 014068           98 TALHMAALNGYFDCVQLLLDLHANVS--AVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  175 (431)
Q Consensus        98 TpLh~Aa~~g~~e~VklLL~~Gadvn--~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~Tp  175 (431)
                      .-|.-|+...++..+-+||.+|....  ....+        +.|+|+||+|+..|++.+.++|+=+|+|+.++|..|+|+
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~--------~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~  697 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGE--------GDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTA  697 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccC--------CCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchh
Confidence            34677888888999999999986543  22222        458999999999999999999999999999999999999


Q ss_pred             HHHHHHhCcHHHHHHhcCCCCC
Q 014068          176 LDVARMWGRHWLEPLLAPSSDA  197 (431)
Q Consensus       176 Lh~Aa~~g~~~v~~LL~~~a~~  197 (431)
                      |.||...|..+++.+|++..-+
T Consensus       698 l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCC
Confidence            9999999999998888776544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.53  E-value=4.9e-08  Score=102.98  Aligned_cols=83  Identities=31%  Similarity=0.428  Sum_probs=74.7

Q ss_pred             CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccC-CCCchHH
Q 014068           22 VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITAL  100 (431)
Q Consensus        22 i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpL  100 (431)
                      .|.+|. .|+|+||+|+..|..+++++||++|.+                                 ++.+| ..|+|||
T Consensus        45 anikD~-~GR~alH~~~S~~k~~~l~wLlqhGid---------------------------------v~vqD~ESG~taL   90 (1267)
T KOG0783|consen   45 ANIKDR-YGRTALHIAVSENKNSFLRWLLQHGID---------------------------------VFVQDEESGYTAL   90 (1267)
T ss_pred             hhHHHh-hccceeeeeeccchhHHHHHHHhcCce---------------------------------eeeccccccchHh
Confidence            566776 999999999999999999999998775                                 67777 4699999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHh
Q 014068          101 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  148 (431)
Q Consensus       101 h~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~  148 (431)
                      |-|+.+|++|++-+||.+|+.+...|.+          |..||..-++
T Consensus        91 HRaiyyG~idca~lLL~~g~SL~i~Dke----------glsplq~~~r  128 (1267)
T KOG0783|consen   91 HRAIYYGNIDCASLLLSKGRSLRIKDKE----------GLSPLQFLSR  128 (1267)
T ss_pred             hHhhhhchHHHHHHHHhcCCceEEeccc----------CCCHHHHHhh
Confidence            9999999999999999999999999977          9999988766

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.53  E-value=1.8e-07  Score=99.74  Aligned_cols=124  Identities=27%  Similarity=0.247  Sum_probs=96.3

Q ss_pred             EeeccCCHHHHHHHHHcC----CCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHH
Q 014068            2 QACRYGHWEVVQTLLLFR----CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~g----adi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      .|+.+|+.-.|+..++..    .++|..|. -|+++|++|+.+.+.+++++|+++...                      
T Consensus        31 ~a~E~gd~~~V~k~l~~~~~~~lninc~d~-lGr~al~iai~nenle~~eLLl~~~~~----------------------   87 (822)
T KOG3609|consen   31 LAHENGDVPLVAKALEYKAVSKLNINCRDP-LGRLALHIAIDNENLELQELLLDTSSE----------------------   87 (822)
T ss_pred             HHHHcCChHHHHHHHHhccccccchhccCh-HhhhceecccccccHHHHHHHhcCccc----------------------
Confidence            378899999999998862    56888897 899999999999999999999965221                      


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                                   .     .-+|.+|+..|..++|++|+.+-.........+....-....+.|||.+||..+|.||+++
T Consensus        88 -------------~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~  149 (822)
T KOG3609|consen   88 -------------E-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQC  149 (822)
T ss_pred             -------------c-----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHH
Confidence                         1     3589999999999999999987544322221111111111348899999999999999999


Q ss_pred             HHHCCCCCc
Q 014068          158 LLSRGASRM  166 (431)
Q Consensus       158 LL~~GAdin  166 (431)
                      ||++|+.+.
T Consensus       150 Ll~kg~~i~  158 (822)
T KOG3609|consen  150 LLTRGHCIP  158 (822)
T ss_pred             HHHcCCCCC
Confidence            999999864

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.47  E-value=4.4e-07  Score=92.67  Aligned_cols=64  Identities=38%  Similarity=0.500  Sum_probs=59.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCC
Q 014068           92 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  165 (431)
Q Consensus        92 ~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdi  165 (431)
                      .+.+|.|+||+|+..|++.+.++|+-+|+|+..+|.+          |+|+|.||-..|..+++.+||++|...
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~----------g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAH----------GRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccC----------CchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            3467899999999999999999999999999999987          999999999999999999999999754

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.43  E-value=7.4e-07  Score=89.56  Aligned_cols=83  Identities=25%  Similarity=0.243  Sum_probs=64.1

Q ss_pred             hHhhhcCChhhHHhhhhhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHH
Q 014068           65 QIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL  143 (431)
Q Consensus        65 ~~a~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpL  143 (431)
                      |..+..++.++...++..+.   ..|..+ ..|.||||.||+.|+..-+++|+-+|||+++.|.+          |.||+
T Consensus       138 hasvRt~nlet~LRll~lGA---~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~----------GmtP~  204 (669)
T KOG0818|consen  138 HSSVRTGNLETCLRLLSLGA---QANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS----------GMTPV  204 (669)
T ss_pred             HHHhhcccHHHHHHHHHccc---ccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC----------CCcHH
Confidence            33344444444443333322   356655 56999999999999999999999999999999976          99999


Q ss_pred             HHHHhcCCHHHHHHHHH
Q 014068          144 HFAACGGNLKCCQVLLS  160 (431)
Q Consensus       144 h~Aa~~g~~eivklLL~  160 (431)
                      .||-..||-++.+.|++
T Consensus       205 ~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  205 DYARQGGHHELAERLVE  221 (669)
T ss_pred             HHHHhcCchHHHHHHHH
Confidence            99999999998887776

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.35  E-value=1e-06  Score=89.48  Aligned_cols=64  Identities=30%  Similarity=0.401  Sum_probs=59.1

Q ss_pred             hhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHC
Q 014068           88 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  161 (431)
Q Consensus        88 ~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~  161 (431)
                      .++.+|..|.||||+|+..|+.+.++.|+.+||++..++++          |++|||.|+..|+.+++..+|.+
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~----------gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNE----------GWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccc----------cccHHHHHHHcCCHHHHHHHHHH
Confidence            38899999999999999999999999999999999999987          99999999999999888777654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.31  E-value=5.3e-07  Score=98.44  Aligned_cols=88  Identities=36%  Similarity=0.443  Sum_probs=81.3

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCC
Q 014068           94 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW  173 (431)
Q Consensus        94 ~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~  173 (431)
                      ..|.|+||.|+..|..-++++||++|+++|..|..          |+||||.+...|+...+.+|+++||+.++.|.+|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~----------g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~  723 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSK----------GRTPLHHATASGHTSIACLLLKRGADPNAFDPDGK  723 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhcc----------CCCcchhhhhhcccchhhhhccccccccccCccCc
Confidence            45889999999999999999999999999999977          99999999999999999999999999999999999


Q ss_pred             cHHHHHHHhCcHHHHHHh
Q 014068          174 LPLDVARMWGRHWLEPLL  191 (431)
Q Consensus       174 TpLh~Aa~~g~~~v~~LL  191 (431)
                      +||++|....+.+++.||
T Consensus       724 ~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  724 LPLDIAMEAANADIVLLL  741 (785)
T ss_pred             chhhHHhhhccccHHHHH
Confidence            999999888776665444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.96  E-value=7.7e-06  Score=89.28  Aligned_cols=124  Identities=23%  Similarity=0.149  Sum_probs=85.7

Q ss_pred             CCCchHHHHHHHhCCHHHHHHHHhc-CCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHc
Q 014068           28 LSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  106 (431)
Q Consensus        28 ~~G~TpLh~Aa~~G~~eiv~~LL~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~  106 (431)
                      ..|+|-||+++..++...++.+++- +..                                 -...|.+|.-.+|++|..
T Consensus       572 ~r~~lllhL~a~~lyawLie~~~e~~~~~---------------------------------~~eld~d~qgV~hfca~l  618 (975)
T KOG0520|consen  572 FRDMLLLHLLAELLYAWLIEKVIEWAGSG---------------------------------DLELDRDGQGVIHFCAAL  618 (975)
T ss_pred             CcchHHHHHHHHHhHHHHHHHHhcccccC---------------------------------chhhcccCCChhhHhhhc
Confidence            4788888998888888888888852 110                                 223344555566664444


Q ss_pred             CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcc------cCCCCCcHHHHHH
Q 014068          107 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS------LNCNGWLPLDVAR  180 (431)
Q Consensus       107 g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~------~d~~G~TpLh~Aa  180 (431)
                      |..-.+.+.+-.|..++.+|.+          |+||||||+..|+..++..|++.|++...      .+-.|.|+-.+|.
T Consensus       619 g~ewA~ll~~~~~~ai~i~D~~----------G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~  688 (975)
T KOG0520|consen  619 GYEWAFLPISADGVAIDIRDRN----------GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR  688 (975)
T ss_pred             CCceeEEEEeecccccccccCC----------CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh
Confidence            4433333444667888888876          88888888888888888888887766543      3456888888888


Q ss_pred             HhCcHHHHHHhcCC
Q 014068          181 MWGRHWLEPLLAPS  194 (431)
Q Consensus       181 ~~g~~~v~~LL~~~  194 (431)
                      .+|+..+.-+|...
T Consensus       689 s~g~~gia~~lse~  702 (975)
T KOG0520|consen  689 ANGHKGIAGYLSEK  702 (975)
T ss_pred             cccccchHHHHhhh
Confidence            88887776666544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.96  E-value=1.9e-05  Score=77.31  Aligned_cols=57  Identities=25%  Similarity=0.319  Sum_probs=52.3

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCC
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF   59 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~   59 (431)
                      +|++.|+++.|++|++.|.++|..|. ...+||.+|+..||.++|++||++|+.-...
T Consensus        42 eacR~GD~d~v~~LVetgvnVN~vD~-fD~spL~lAsLcGHe~vvklLLenGAiC~rd   98 (516)
T KOG0511|consen   42 EACRAGDVDRVRYLVETGVNVNAVDR-FDSSPLYLASLCGHEDVVKLLLENGAICSRD   98 (516)
T ss_pred             HHhhcccHHHHHHHHHhCCCcchhhc-ccccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            58999999999999999999999997 8899999999999999999999999854443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.92  E-value=1.8e-05  Score=70.90  Aligned_cols=71  Identities=24%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             hhcccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCc
Q 014068           88 FVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  166 (431)
Q Consensus        88 ~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~G-advn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin  166 (431)
                      .||.+|..|+|||+.|+..|..+.|.||+.+| +.+...|..          |.+++.+|-+.|..++|..|.+.-.+-.
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~s----------sldaaqlaek~g~~~fvh~lfe~~~ets   73 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDES----------SLDAAQLAEKGGAQAFVHSLFENDRETS   73 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccc----------cchHHHHHHhcChHHHHHHHHHHhccCC
Confidence            38899999999999999999999999999999 888888865          9999999999999999999998754443


Q ss_pred             cc
Q 014068          167 SL  168 (431)
Q Consensus       167 ~~  168 (431)
                      ..
T Consensus        74 ~p   75 (223)
T KOG2384|consen   74 HP   75 (223)
T ss_pred             Cc
Confidence            33

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.89  E-value=3e-05  Score=76.06  Aligned_cols=71  Identities=28%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q 014068           97 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL  176 (431)
Q Consensus        97 ~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpL  176 (431)
                      .--|..|++.|+.+.|++|++.|.+||++|..          ..+||.+|+..||..+|++||++||--..-.-+|...+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~f----------D~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRF----------DSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcc----------cccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            34588999999999999999999999999987          88999999999999999999999996654445665544


Q ss_pred             H
Q 014068          177 D  177 (431)
Q Consensus       177 h  177 (431)
                      +
T Consensus       107 Y  107 (516)
T KOG0511|consen  107 Y  107 (516)
T ss_pred             h
Confidence            3

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.88  E-value=2.4e-05  Score=70.17  Aligned_cols=66  Identities=24%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             CCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCC-CCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       119 Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~G-Adin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      +.++|.+|..          |+|||+.|+..|+.+.+.||+.+| +.+.+.|..|.+++.+|-+.|..+++.+|...
T Consensus         2 e~~in~rD~f----------gWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAF----------GWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhh----------cchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4678888866          999999999999999999999999 89999999999999999999999998888654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.82  E-value=2.8e-05  Score=85.09  Aligned_cols=128  Identities=18%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             hcccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH-HCCCCCc
Q 014068           89 VNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL-SRGASRM  166 (431)
Q Consensus        89 in~~d~~G~TpLh~Aa~~g~~e~VklLL~~-Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL-~~GAdin  166 (431)
                      +....-.|+|.||+++..++...++.+++- |......|.+          |.-.+|+++ .++++.+-+|+ -.|..++
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d----------~qgV~hfca-~lg~ewA~ll~~~~~~ai~  635 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRD----------GQGVIHFCA-ALGYEWAFLPISADGVAID  635 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhccc----------CCChhhHhh-hcCCceeEEEEeecccccc
Confidence            344555799999999999999999999985 5555555544          666788854 45566555555 4599999


Q ss_pred             ccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccc
Q 014068          167 SLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTT  229 (431)
Q Consensus       167 ~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~  229 (431)
                      .+|..||||||+|+..|+..++..| ..+++.......  +.-..++.++..+|+..|+..+..
T Consensus       636 i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdp--s~~~p~g~ta~~la~s~g~~gia~  697 (975)
T KOG0520|consen  636 IRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDP--SPETPGGKTAADLARANGHKGIAG  697 (975)
T ss_pred             cccCCCCcccchHhhcCHHHHHHHHHHhccccccccCC--CCCCCCCCchhhhhhcccccchHH
Confidence            9999999999999999998886444 445554432211  222334568888999888877766

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.79  E-value=4.9e-05  Score=81.59  Aligned_cols=122  Identities=20%  Similarity=0.135  Sum_probs=95.0

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  109 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  109 (431)
                      +.--...|+..|+.-.|+..++....                             ....+|..|.-|.++|++|+.+.+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~-----------------------------~~lninc~d~lGr~al~iai~nenl   75 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAV-----------------------------SKLNINCRDPLGRLALHIAIDNENL   75 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccc-----------------------------cccchhccChHhhhceecccccccH
Confidence            34456778999999999988864221                             1123788999999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCC----------cccCCCCCcHHHHH
Q 014068          110 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR----------MSLNCNGWLPLDVA  179 (431)
Q Consensus       110 e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdi----------n~~d~~G~TpLh~A  179 (431)
                      +++++|++++..+  .               -+|.+|+..|..++|++|+.+-...          ...-..+.|||.+|
T Consensus        76 e~~eLLl~~~~~~--g---------------dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLA  138 (822)
T KOG3609|consen   76 ELQELLLDTSSEE--G---------------DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLA  138 (822)
T ss_pred             HHHHHHhcCcccc--c---------------hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHH
Confidence            9999999987665  1               3799999999999999999874332          12235678999999


Q ss_pred             HHhCcHHHHHHhcC-CCCC
Q 014068          180 RMWGRHWLEPLLAP-SSDA  197 (431)
Q Consensus       180 a~~g~~~v~~LL~~-~a~~  197 (431)
                      |..+|++|+++|+. ++.+
T Consensus       139 Ah~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen  139 AHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHhcchHHHHHHHHcCCCC
Confidence            99999999876654 5544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.78  E-value=2e-05  Score=86.38  Aligned_cols=89  Identities=28%  Similarity=0.300  Sum_probs=80.6

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.|+||.|+..|..-++++|++++++                                 +|..|..|.||||.+...|+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~---------------------------------vn~~d~~g~~plh~~~~~g~  701 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD---------------------------------VNALDSKGRTPLHHATASGH  701 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc---------------------------------chhhhccCCCcchhhhhhcc
Confidence            679999999999999999999988776                                 89999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                      ...+.+|+++|++.++.+.+          |.+||++|....+.+++-+|.-
T Consensus       702 ~~~~~~ll~~~a~~~a~~~~----------~~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  702 TSIACLLLKRGADPNAFDPD----------GKLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             cchhhhhccccccccccCcc----------CcchhhHHhhhccccHHHHHhh
Confidence            99999999999999999977          9999999988777777666543

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=97.63  E-value=1.7e-05  Score=56.46  Aligned_cols=46  Identities=35%  Similarity=0.780  Sum_probs=38.1

Q ss_pred             chhhhhhccccchhccCCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ..|.+|++....+...+|||. +|..|+..+-..            ...||+||++|.+
T Consensus         3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------------~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKR------------KKKCPICRQPIES   49 (50)
T ss_dssp             SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT------------TSBBTTTTBB-SE
T ss_pred             CCCccCCccCCceEEeCCCChHHHHHHhHHhccc------------CCCCCcCChhhcC
Confidence            469999999999999999999 899999998762            2369999999975

...

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.21  E-value=0.00049  Score=69.91  Aligned_cols=70  Identities=21%  Similarity=0.221  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q 014068          107 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  180 (431)
Q Consensus       107 g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa  180 (431)
                      .-.+.|++|.+++++.|..-......    .--.|+||||+..|..++|.+||+.|+|+.++|..|.||.++++
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~----~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEAND----YLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccc----cccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            34678999999988876543211111    11569999999999999999999999999999999999999988

>smart00248 ANK ankyrin repeats

Probab=96.87  E-value=0.0019  Score=38.26  Aligned_cols=28  Identities=50%  Similarity=0.782  Sum_probs=25.7

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHCCCCCc
Q 014068          139 GSTPLHFAACGGNLKCCQVLLSRGASRM  166 (431)
Q Consensus       139 G~TpLh~Aa~~g~~eivklLL~~GAdin  166 (431)
                      |.||||+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.00053  Score=65.31  Aligned_cols=43  Identities=40%  Similarity=0.942  Sum_probs=38.0

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG  290 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~  290 (431)
                      -.|..|++......+.+|||.+|=.|+++++....            -||+||..
T Consensus       240 ~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~------------eCPlCR~~  282 (293)
T KOG0317|consen  240 RKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA------------ECPLCREK  282 (293)
T ss_pred             CceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc------------CCCccccc
Confidence            45999999999999999999999999999986542            29999965

>smart00248 ANK ankyrin repeats

Probab=96.85  E-value=0.0019  Score=38.20  Aligned_cols=29  Identities=48%  Similarity=0.716  Sum_probs=26.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 014068           95 GGITALHMAALNGYFDCVQLLLDLHANVS  123 (431)
Q Consensus        95 ~G~TpLh~Aa~~g~~e~VklLL~~Gadvn  123 (431)
                      .|.||||+|+..++.+++++|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999998764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.00061  Score=66.86  Aligned_cols=54  Identities=30%  Similarity=0.653  Sum_probs=42.9

Q ss_pred             CCchhhhhhccccchhccCCChHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          234 DADTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~-C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      ..+.|+||+..+-+.++.+|+|.. |..|+..+-=-.|            .||+||++|..+..+-.
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n------------~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTN------------NCPICRQPIEELLEIYV  343 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhc------------CCCccccchHhhheecc
Confidence            357799999999999999999987 7777776651111            39999999999876643

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.00037  Score=49.33  Aligned_cols=50  Identities=32%  Similarity=0.650  Sum_probs=41.0

Q ss_pred             chhhhhhccccchhccCCChHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccccee
Q 014068          236 DTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  296 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~-C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~  296 (431)
                      +.|.+|.|.+-.-...-|||.. |..|.+++-.           .+.-.||+||.+|..+.|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~-----------~~~g~CPiCRapi~dvIk   58 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKK-----------ALHGCCPICRAPIKDVIK   58 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHH-----------ccCCcCcchhhHHHHHHH
Confidence            7899999999999999999987 8888888731           133469999999987654

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=96.58  E-value=0.0025  Score=57.94  Aligned_cols=64  Identities=20%  Similarity=0.433  Sum_probs=43.4

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCC----CCCCCCCCCCCcccccccccce
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPS----EMVGPPGSIPCPLCRHGIVSFT  295 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~----~~~~~p~~~~CP~Cr~~I~~~~  295 (431)
                      ..+.-.|.||++..-......|||.+|..|+.++-...+.+.    ..........||.||..|....
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~   82 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT   82 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence            334567999999988888999999999999987532111110    0111223457999999987543

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.41  E-value=0.0022  Score=63.48  Aligned_cols=54  Identities=30%  Similarity=0.612  Sum_probs=43.2

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccce
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  295 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~  295 (431)
                      .+..+.|.+|-|..-.|..++|||..|+.||-.+.-.    +...      -||+||-+|.+.-
T Consensus       366 gsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~s----d~gq------~CPFCRcEIKGte  419 (563)
T KOG1785|consen  366 GSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDS----DEGQ------TCPFCRCEIKGTE  419 (563)
T ss_pred             cchHHHHHHhhccCCCcccccccchHHHHHHHhhccc----CCCC------CCCceeeEecccc
Confidence            3445779999999999999999999999999877422    2222      3999999998763

>PHA02929 N1R/p28-like protein; Provisional

Probab=96.36  E-value=0.0022  Score=60.67  Aligned_cols=51  Identities=27%  Similarity=0.720  Sum_probs=38.3

Q ss_pred             CCchhhhhhccccc--------hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccccee
Q 014068          234 DADTCAVCLERACT--------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  296 (431)
Q Consensus       234 ~~~~C~vcle~~~~--------va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~  296 (431)
                      ....|.+|++....        ....+|+|.+|..|+...-..            ...||+||..+.++++
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------------~~tCPlCR~~~~~v~~  231 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------------KNTCPVCRTPFISVIK  231 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------------CCCCCCCCCEeeEEee
Confidence            34789999997432        245689999999999887432            1259999999887654

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=96.04  E-value=0.0052  Score=42.31  Aligned_cols=40  Identities=33%  Similarity=0.852  Sum_probs=29.6

Q ss_pred             hhhhhccc---cchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccc
Q 014068          238 CAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  289 (431)
Q Consensus       238 C~vcle~~---~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~  289 (431)
                      |.+|++..   -......|||.+|.+|+..+-            ...+.||+||+
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~------------~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK------------GKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhc------------CCCCCCcCCCC
Confidence            44555554   347888999999999998774            23467999984

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=95.76  E-value=0.0066  Score=40.96  Aligned_cols=43  Identities=37%  Similarity=0.794  Sum_probs=30.8

Q ss_pred             hhhhhccc-cchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 014068          238 CAVCLERA-CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  291 (431)
Q Consensus       238 C~vcle~~-~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I  291 (431)
                      |.+|++.. ..+...+|||.+|..|+...-..           +...||.||..+
T Consensus         2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-----------~~~~Cp~C~~~~   45 (45)
T cd00162           2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-----------GKNTCPLCRTPI   45 (45)
T ss_pred             CCcCchhhhCceEecCCCChhcHHHHHHHHHh-----------CcCCCCCCCCcC
Confidence            56777766 44455669999999999877543           234699999764

>PHA02926 zinc finger-like protein; Provisional

Probab=95.63  E-value=0.012  Score=54.38  Aligned_cols=57  Identities=23%  Similarity=0.585  Sum_probs=41.0

Q ss_pred             CCCCchhhhhhccccc---------hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          232 SDDADTCAVCLERACT---------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~---------va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      .+..+.|.+|+|....         -...+|+|.+|..|+..+.....      .+.....||+||......
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~------~~~~~rsCPiCR~~f~~I  232 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR------ETGASDNCPICRTRFRNI  232 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc------ccCcCCcCCCCcceeeee
Confidence            3455789999987432         35669999999999999976432      123445799999876633

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.0051  Score=57.04  Aligned_cols=54  Identities=30%  Similarity=0.607  Sum_probs=42.4

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecC
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  298 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~  298 (431)
                      =.|.||||.+-...+..|||.+|=-|+..+=-.         .+.+..||+|+..|..=+.+|
T Consensus        48 FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~---------~~~~~~cPVCK~~Vs~~~vvP  101 (230)
T KOG0823|consen   48 FDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT---------RPNSKECPVCKAEVSIDTVVP  101 (230)
T ss_pred             eeeeeeccccCCCEEeecccceehHHHHHHHhh---------cCCCeeCCccccccccceEEe
Confidence            459999999999999999999998888877322         234456999999987554444

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.44  E-value=0.054  Score=50.30  Aligned_cols=99  Identities=13%  Similarity=0.159  Sum_probs=66.6

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHH--HHc
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA--ALN  106 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~A--a~~  106 (431)
                      .-.++|-+|+.++..+++-+|+.+..-      +.-.++                      ...  .+.--+-|+  ...
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~f~f------t~~dv~----------------------~~~--~~~ydieY~LS~h~  227 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSKFNF------TKQDVA----------------------SME--KELYDIEYLLSEHS  227 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhcce------ecchhh----------------------hcC--cchhhHHHHHhhcC
Confidence            457889999999999999999975321      000000                      000  011123333  234


Q ss_pred             CCHHHHHHHHHCC-CCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCC
Q 014068          107 GYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  164 (431)
Q Consensus       107 g~~e~VklLL~~G-advn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAd  164 (431)
                      .+..++++.|++| +++|..-..       .++|.|-|.-|++.++.+++.+||++||-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~-------~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQK-------VNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhc-------cCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4678899999988 567654322       24699999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.28  E-value=0.033  Score=57.05  Aligned_cols=46  Identities=30%  Similarity=0.320  Sum_probs=40.9

Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHH
Q 014068           92 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  147 (431)
Q Consensus        92 ~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa  147 (431)
                      .+.--.|+||+|+.+|.-++|.+||+.|+|+..+|..          |.||..++.
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~----------Grtpy~ls~  471 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGA----------GRTPYSLSA  471 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccC----------CCCcccccc
Confidence            3344679999999999999999999999999999965          999999986

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.15  E-value=0.0076  Score=40.58  Aligned_cols=40  Identities=35%  Similarity=0.826  Sum_probs=30.7

Q ss_pred             hhhhhccccchh-ccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccc
Q 014068          238 CAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  287 (431)
Q Consensus       238 C~vcle~~~~va-~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~C  287 (431)
                      |.+|++...... ..+|||.+|..|+...-.+          .+.+.||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~----------~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN----------SGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH----------TSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHh----------cCCccCCcC
Confidence            557777776666 8999999999999988765          123469987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=95.03  E-value=0.0054  Score=42.12  Aligned_cols=41  Identities=37%  Similarity=0.767  Sum_probs=29.5

Q ss_pred             chhhhhhccc---cchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccc
Q 014068          236 DTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  288 (431)
Q Consensus       236 ~~C~vcle~~---~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr  288 (431)
                      +.|.||++..   ..+...+|||.++.+|+.++-...+            .||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~------------~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN------------SCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS------------B-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC------------cCCccC
Confidence            3577787764   3566777999999999988865532            599998

...

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.83  E-value=0.014  Score=55.11  Aligned_cols=46  Identities=30%  Similarity=0.721  Sum_probs=36.8

Q ss_pred             hhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          237 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       237 ~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .|.+|++.+-...+.+|||.+|--|++-......          ...||+||+.++
T Consensus       217 kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k----------~~~CplCRak~~  262 (271)
T COG5574         217 KCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK----------YEFCPLCRAKVY  262 (271)
T ss_pred             ceeeeecccCCcccccccchhhHHHHHHHHHhhc----------cccCchhhhhcc
Confidence            4999999999999999999999999997422211          135999997653

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.022  Score=50.73  Aligned_cols=45  Identities=29%  Similarity=0.755  Sum_probs=34.2

Q ss_pred             chhhhhhccccc--hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          236 DTCAVCLERACT--VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       236 ~~C~vcle~~~~--va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      -.|.+|++..-.  .....|||.||-+|+.++-...+            .||+||-.|.
T Consensus       132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~------------~CP~C~kkIt  178 (187)
T KOG0320|consen  132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN------------KCPTCRKKIT  178 (187)
T ss_pred             cCCCceecchhhccccccccchhHHHHHHHHHHHhCC------------CCCCcccccc
Confidence            458899987544  35689999999999988754443            5999997554

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.018  Score=59.16  Aligned_cols=52  Identities=29%  Similarity=0.671  Sum_probs=42.0

Q ss_pred             CchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          235 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ...|-+||+.+....-..|||-+|--|+|..=....       --+..-||+||..|.=
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~-------~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA-------IKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc-------ccCCccCCchhhhccc
Confidence            467999999999999999999999999998754441       1223479999999885

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=94.09  E-value=0.021  Score=38.96  Aligned_cols=42  Identities=26%  Similarity=0.659  Sum_probs=28.0

Q ss_pred             hhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccc
Q 014068          238 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  287 (431)
Q Consensus       238 C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~C  287 (431)
                      |.+|++..-......|||.+|..|+...-.....        ....||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~--------~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG--------SGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS--------ST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCC--------cCCCCcCC
Confidence            5678888888888999999999999988644321        11679987

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.91  E-value=0.44  Score=43.07  Aligned_cols=45  Identities=20%  Similarity=0.112  Sum_probs=34.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          142 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       142 pLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                      -|.+|+..|-...|.-.+++|.+++.      ++|..|+.+++..|..++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            36778888888888888888877654      6888888888877776654

These proteins may be involved in promoting survival of infected macrophages [].

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=93.79  E-value=0.023  Score=37.96  Aligned_cols=31  Identities=23%  Similarity=0.649  Sum_probs=24.6

Q ss_pred             hhhhhccccch-hccCCChHHHHHHHHHhhhc
Q 014068          238 CAVCLERACTV-AAEGCRHELCVRCALYLCST  268 (431)
Q Consensus       238 C~vcle~~~~v-a~~~CgH~~C~~cll~~ga~  268 (431)
                      |.+|++..-.. ....|||.+|.+|+...-..
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~   32 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK   32 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC
Confidence            56777777666 68999999999999988655

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.16  E-value=0.017  Score=56.90  Aligned_cols=48  Identities=31%  Similarity=0.681  Sum_probs=36.5

Q ss_pred             CCchhhhhhccccchhccCCChHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceec
Q 014068          234 DADTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  297 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~-C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l  297 (431)
                      -.+.|.+|++.+-..+..+|||.. |+.|..     .+           +.||+||+-|.+.+|+
T Consensus       304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~-----~l-----------~~CPvCR~rI~~~~k~  352 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSK-----HL-----------PQCPVCRQRIRLVRKR  352 (355)
T ss_pred             CCCceEEecCCccceeeecCCcEEEchHHHh-----hC-----------CCCchhHHHHHHHHHH
Confidence            346699999999999999999987 333332     22           2399999999887653

>smart00184 RING Ring finger

Probab=93.11  E-value=0.081  Score=34.04  Aligned_cols=30  Identities=27%  Similarity=0.627  Sum_probs=23.4

Q ss_pred             hhhhhccccchhccCCChHHHHHHHHHhhh
Q 014068          238 CAVCLERACTVAAEGCRHELCVRCALYLCS  267 (431)
Q Consensus       238 C~vcle~~~~va~~~CgH~~C~~cll~~ga  267 (431)
                      |.+|++........+|||.+|..|+...-.
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~   30 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK   30 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHH
Confidence            456777766777889999999999887643

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=92.42  E-value=0.13  Score=45.22  Aligned_cols=36  Identities=25%  Similarity=0.512  Sum_probs=27.0

Q ss_pred             CCCCCcccccccccceecCC--CCcccCCCCCcccccc
Q 014068          280 GSIPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCT  315 (431)
Q Consensus       280 ~~~~CP~Cr~~I~~~~~l~~--~~~~~~~~~~~~~~~~  315 (431)
                      ..+.||+||.+|.+|+++-.  .-++.-+++-+.--|.
T Consensus        79 ~~L~CPLCRG~V~GWtvve~AR~~LN~K~RsC~~e~C~  116 (162)
T PF07800_consen   79 PELACPLCRGEVKGWTVVEPARRFLNAKKRSCSQESCS  116 (162)
T ss_pred             ccccCccccCceeceEEchHHHHHhccCCccCcccccc
Confidence            36899999999999998866  4456556666666554

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.85  E-value=0.024  Score=54.21  Aligned_cols=47  Identities=30%  Similarity=0.824  Sum_probs=38.8

Q ss_pred             CchhhhhhccccchhccCCChHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceec
Q 014068          235 ADTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  297 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~~CgH~~-C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l  297 (431)
                      ...|.||.+.|-.-....|||.. |++|--.+    +            -||+||+-|++.+++
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~------------eCPICRqyi~rvvri  347 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----N------------ECPICRQYIVRVVRI  347 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccc----c------------cCchHHHHHHHHHhh
Confidence            56799999999999999999988 88875433    1            499999999887654

>TIGR00599 rad18 DNA repair protein rad18

Probab=91.76  E-value=0.1  Score=53.04  Aligned_cols=48  Identities=25%  Similarity=0.521  Sum_probs=37.3

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ..-.|.+|++........+|||.+|..|+.+.-..            ...||.||..+..
T Consensus        25 ~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~------------~~~CP~Cr~~~~~   72 (397)
T TIGR00599        25 TSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN------------QPKCPLCRAEDQE   72 (397)
T ss_pred             cccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC------------CCCCCCCCCcccc
Confidence            34569999998877778999999999999876322            1259999998763

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=91.50  E-value=0.13  Score=49.21  Aligned_cols=55  Identities=25%  Similarity=0.526  Sum_probs=41.4

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      .+....|.||.++........|||.||.-|...+=-            ....||+||.+ ..++.|++
T Consensus        22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~------------~qp~CP~Cr~~-~~esrlr~   76 (391)
T COG5432          22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLG------------TQPFCPVCRED-PCESRLRG   76 (391)
T ss_pred             chhHHHhhhhhheeecceecccccchhHHHHHHHhc------------CCCCCcccccc-HHhhhccc
Confidence            344567999999999999999999999998876521            12359999965 44556665

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.57  E-value=0.17  Score=48.73  Aligned_cols=45  Identities=31%  Similarity=0.750  Sum_probs=37.4

Q ss_pred             CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccc
Q 014068          233 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  289 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~  289 (431)
                      .+.-.|.+|++..-.....+|||.+|..|+-....            ..+.||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~------------~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE------------GPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCccccccchHhHHHHHHhcC------------CCcCCcccCC
Confidence            34566999999887779999999999999998875            3378999994

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.27  E-value=1.1  Score=41.80  Aligned_cols=95  Identities=15%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHH--hcCCHHHHHHHHHCC-CCCccc---C
Q 014068           96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA--CGGNLKCCQVLLSRG-ASRMSL---N  169 (431)
Q Consensus        96 G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa--~~g~~eivklLL~~G-Adin~~---d  169 (431)
                      -.++|.+|..++..+++-+||.+- +....|.-.-      ..+.--+-|+.  ..-+..+++++|++| +++|..   -
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~------~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~  251 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASM------EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKV  251 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhc------CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhcc
Confidence            458999999999999999999752 2222221100      01222244443  345678999999998 477754   5


Q ss_pred             CCCCcHHHHHHHhCcHHHHHHhcCCCCC
Q 014068          170 CNGWLPLDVARMWGRHWLEPLLAPSSDA  197 (431)
Q Consensus       170 ~~G~TpLh~Aa~~g~~~v~~LL~~~a~~  197 (431)
                      +.|.|-|.-|.++++.+++.+|++.+.+
T Consensus       252 NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  252 NSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             CCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            7899999999999999998777766553

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.38  E-value=0.13  Score=39.50  Aligned_cols=42  Identities=38%  Similarity=0.861  Sum_probs=28.6

Q ss_pred             Cchhhhhhccc-------------cchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccc
Q 014068          235 ADTCAVCLERA-------------CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  288 (431)
Q Consensus       235 ~~~C~vcle~~-------------~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr  288 (431)
                      .+.|.||++..             +.++...|||.+...|+...-...+            .||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN------------TCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS------------B-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC------------cCCCCC
Confidence            34588888764             5667778999997777776653332            599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.08  E-value=0.76  Score=35.40  Aligned_cols=65  Identities=14%  Similarity=0.173  Sum_probs=47.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHH
Q 014068           98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD  177 (431)
Q Consensus        98 TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh  177 (431)
                      .-|..|+..|+.|+++.+++.+ .++                ...|..|+...+.+++++|+++- +.+       -++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~----------------~~~l~~AI~~H~n~i~~~l~~~y-~~~-------i~~~   62 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD----------------NDCLEYAIKSHNNEIADWLIENY-NLK-------ISIS   62 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH----------------HHHHHHHHHHhhHHHHHHHHHhc-CCC-------cCHH
Confidence            4579999999999999999766 222                24599999999999999999872 221       1255


Q ss_pred             HHHHhCcHHH
Q 014068          178 VARMWGRHWL  187 (431)
Q Consensus       178 ~Aa~~g~~~v  187 (431)
                      .+....+...
T Consensus        63 ~~~~~~N~~a   72 (76)
T PF11929_consen   63 DCLKYYNLRA   72 (76)
T ss_pred             HHHHHCChHh
Confidence            5555655543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=87.99  E-value=0.4  Score=46.97  Aligned_cols=48  Identities=27%  Similarity=0.587  Sum_probs=37.0

Q ss_pred             CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          233 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      +..-.|.||++..-.....+|+|.+|--|....=...            +.||.|+-++.
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~------------p~CP~C~~~~~   68 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK------------PQCPTCCVTVT   68 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC------------CCCCceecccc
Confidence            3345699999999999999999999888887653221            35999987665

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.09  E-value=0.37  Score=46.55  Aligned_cols=51  Identities=24%  Similarity=0.502  Sum_probs=38.4

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ....+.|.+|+.+.-.....+|+|.+|..|+.-.  --|   ..      .-|++||.+|.+
T Consensus         4 ~~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGs--y~n---dk------~~CavCR~pids   54 (324)
T KOG0824|consen    4 RTKKKECLICYNTGNCPVNLYCFHKFCYICIKGS--YKN---DK------KTCAVCRFPIDS   54 (324)
T ss_pred             cccCCcceeeeccCCcCccccccchhhhhhhcch--hhc---CC------CCCceecCCCCc
Confidence            3445779999999988899999999998888532  111   11      239999999984

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.33  E-value=1.1  Score=34.43  Aligned_cols=50  Identities=18%  Similarity=0.162  Sum_probs=41.2

Q ss_pred             cHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCCC
Q 014068          141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  197 (431)
Q Consensus       141 TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~  197 (431)
                      .-|..|+..|+.|+++.+++.+ .++      ...|..|+...+.+++.+|...-+.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~y~~   57 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIENYNL   57 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHhcCC
Confidence            4589999999999999999765 222      4579999999999999998776544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.32  E-value=0.48  Score=46.50  Aligned_cols=55  Identities=25%  Similarity=0.536  Sum_probs=44.9

Q ss_pred             CchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          235 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      ...|.||-+..-..+..+|+|..|--|++++-|--+...          ||+||.+-.-++--..
T Consensus        61 n~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~----------C~~CrTE~e~V~fT~~  115 (493)
T COG5236          61 NMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKG----------CPLCRTETEAVVFTAS  115 (493)
T ss_pred             cceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccC----------CCccccccceEEEecC
Confidence            356999999999999999999999999999988766432          9999998776544333

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=85.65  E-value=0.57  Score=45.94  Aligned_cols=46  Identities=26%  Similarity=0.597  Sum_probs=30.3

Q ss_pred             chhhhhhcc----cc-chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          236 DTCAVCLER----AC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       236 ~~C~vcle~----~~-~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ..|-+|...    +. .+.+..|||.+|..|+..+-...           +.+||.|+..+.
T Consensus         4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~-----------~~~CP~C~~~lr   54 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------SGSCPECDTPLR   54 (309)
T ss_pred             CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC-----------CCCCCCCCCccc
Confidence            357777763    22 22333899999999998874221           237999997655

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.90  E-value=0.66  Score=47.33  Aligned_cols=46  Identities=28%  Similarity=0.724  Sum_probs=36.4

Q ss_pred             hhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          237 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       237 ~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      .|.+|....-..+..+|||.+|..|+.. +.+           ....||.||.++.++
T Consensus        86 ~c~vc~~~l~~pv~tpcghs~c~~Cl~r-~ld-----------~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   86 ECCVCSRALYPPVVTPCGHSFCLECLDR-SLD-----------QETECPLCRDELVEL  131 (398)
T ss_pred             hhhhhHhhcCCCccccccccccHHHHHH-Hhc-----------cCCCCcccccccccc
Confidence            4888988888888889999999999877 222           223599999998853

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.09  E-value=0.51  Score=47.07  Aligned_cols=46  Identities=30%  Similarity=0.650  Sum_probs=30.6

Q ss_pred             chhhhhhccc---cchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          236 DTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       236 ~~C~vcle~~---~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      +.|+||+|..   ..+.+.+|+|.+     ...|-|+.+...      .-.||+|++.|-
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~F-----H~~CIDpWL~~~------r~~CPvCK~di~  278 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKF-----HVNCIDPWLTQT------RTFCPVCKRDIR  278 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCch-----hhccchhhHhhc------CccCCCCCCcCC
Confidence            4899999874   567889999998     222233333222      134999998654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=80.17  E-value=0.57  Score=32.06  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=15.2

Q ss_pred             hhccCCChHHHHHHHHHhhhcC
Q 014068          248 VAAEGCRHELCVRCALYLCSTN  269 (431)
Q Consensus       248 va~~~CgH~~C~~cll~~ga~~  269 (431)
                      .....|||.+|.+|+..+....
T Consensus        14 P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen   14 PMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CEEEeCccHHHHHHHHHHHhcC
Confidence            3445699999999999987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	431
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-04
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-07
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		7e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		5e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-05
1uoh_A	226	Human Gankyrin Length = 226		2e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		5e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		6e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		9e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-04

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A   G+ + V+ L+    +V  +D   GRT LH AA NGH   ++L+++         
Sbjct: 9   IEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLISK-------- 59
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                       G+ V +K                G T LH AA NG+ + V+LL+   A
Sbjct: 60  ------------GADVNAKDSD-------------GRTPLHHAAENGHKEVVKLLISKGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A              G TPLH AA  G+ +  ++L+S+GA   + + +G  PLD+AR
Sbjct: 95  DVNAKDS----------DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
             G   +  LL
Sbjct: 145 EHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
           AA NG  D V+ L++  A+V+A              G TPLH AA  G+ +  ++L+S+G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDS----------DGRTPLHHAAENGHKEVVKLLISKG 60
Query: 163 ASRMSLNCNGWLPLDVARMWGRHWLEPLL--------APSSDAVMPRFHPS 205
           A   + + +G  PL  A   G   +  LL        A  SD   P  H +
Sbjct: 61  ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A   G+ + V+ LL    +V  +D   G+T LH AA NGH   ++L+++         
Sbjct: 9   IEAAENGNKDRVKDLLENGADVNASDS-DGKTPLHLAAENGHKEVVKLLLS--------- 58
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                               D +A      K +DG  T LH+AA NG+ + V+LLL   A
Sbjct: 59  -----------------QGADPNA------KDSDG-KTPLHLAAENGHKEVVKLLLSQGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           + +A              G TPLH AA  G+ +  ++LLS+GA   + + +G  PLD+AR
Sbjct: 95  DPNAKDSD----------GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
             G   +  LL
Sbjct: 145 EHGNEEVVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A   G+ + V+ L+    +V  +D   GRT LH+AA  GH   ++L+++         
Sbjct: 9   IEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHYAAKEGHKEIVKLLISK-------- 59
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                       G+ V +K                G T LH AA  G+ + V+LL+   A
Sbjct: 60  ------------GADVNAKDSD-------------GRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A              G TPLH+AA  G+ +  ++L+S+GA   + + +G  PLD+AR
Sbjct: 95  DVNAKDSD----------GRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
             G   +  LL
Sbjct: 145 EHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A   G+ + V+ LL    +   +D   GRT LH+AA NGH   ++L+++         
Sbjct: 9   IEAAENGNKDRVKDLLENGADPNASDS-DGRTPLHYAAENGHKEIVKLLLS--------- 58
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                               D +A      K +DG  T LH AA NG+ + V+LLL   A
Sbjct: 59  -----------------KGADPNA------KDSDG-RTPLHYAAENGHKEIVKLLLSKGA 94
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           + +A              G TPLH+AA  G+ +  ++LLS+GA   + + +G  PLD+AR
Sbjct: 95  DPNAKDSD----------GRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Query: 181 MWGRHWLEPLL 191
             G   +  LL
Sbjct: 145 EHGNEEIVKLL 155

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   D G+T LH+AA NG  + V++LL   A+V+A             AG TPLH AA 
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----------SAGITPLHLAAY 81
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + +  GW PL +A + G+   +E LL   +D
Sbjct: 82  DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D  SG+T LH AA+ GH+  + ++           
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAEDD-SGKTPLHLAAIKGHLEIVEVL----------- 66
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          +K   D +A  K        G T LH+AAL G+ + V++LL   A
Sbjct: 67  ---------------LKHGADVNAADKM-------GDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A   +          G TPLH AA  G+L+  +VLL  GA   + +  G    D++ 
Sbjct: 105 DVNATDTY----------GFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
             G   L  +L
Sbjct: 155 DNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   D G T LH+AA+ G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----------KMGDTPLHLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + +  G+ PL +A   G    +E LL   +D
Sbjct: 90  YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D  +G T LH AAV+GH+  + ++           
Sbjct: 19  LEAARAGQDDEVRILIANGADVNAVDN-TGLTPLHLAAVSGHLEIVEVL----------- 66
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          +K   D  A   +       G T LH+AA+ G+ + V++LL   A
Sbjct: 67  ---------------LKHGADVDAADVY-------GFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A              GSTPLH AA  G+L+  +VLL  GA   + +  G    D++ 
Sbjct: 105 DVNAFDM----------TGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWL 187
             G   L
Sbjct: 155 DNGNEDL 161

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   + G+T LH+AA++G+ + V++LL   A+V A   +          G TPLH AA 
Sbjct: 40  VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY----------GFTPLHLAAM 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + +  G  PL +A   G    +E LL   +D
Sbjct: 90  TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 43/151 (28%)
Query: 29  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
           +GRT LH AA NGH+  ++L+                          +++  D       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLL--------------------------LEAGAD------- 27
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            G+L+  ++LL  GA   + + NG  PL +A
Sbjct: 78  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN A + G T LH+AA +G+ + V++LL   A+V A              G TPLH AA 
Sbjct: 40  VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF----------GYTPLHLAAY 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   +++ +G  PL +A  WG    +E LL   +D
Sbjct: 90  WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 44/179 (24%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D+L G T LH AA  GH+  + +++          
Sbjct: 19  LEAARAGQDDEVRILMANGADVNATDWL-GHTPLHLAAKTGHLEIVEVLL---------- 67
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           K   D +A   +       G T LH+AA NG+ + V++LL   A
Sbjct: 68  ----------------KYGADVNAWDNY-------GATPLHLAADNGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           +V+A  +           G TPLH AA  G+L+  +VLL  GA   + +  G    D++
Sbjct: 105 DVNAKDYE----------GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T LH+AA  G+ + V++LL   A+V+A   +          G+TPLH AA  G+L+  
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY----------GATPLHLAADNGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
           +VLL  GA   + +  G+ PL +A   G    +E LL   +D
Sbjct: 97  EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D   G T LH AA  GH+  + +++          
Sbjct: 7   LEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL---------- 55
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           K+  D +A  K        G T LH+AA  G+ + V++LL   A
Sbjct: 56  ----------------KAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A         D    G TPLH AA  G+L+  +VLL  GA   + +  G  P D+A 
Sbjct: 93  DVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 181 MWGRHWLEPLLAPSS 195
             G   +  +L  ++
Sbjct: 143 REGHEDIAEVLQKAA 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   + G T LH+AA NG+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL----------TGITPLHLAAA 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + + +G  PL +A  +G    +E LL   +D
Sbjct: 90  TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D   G T LH AA  GH+  + +++          
Sbjct: 7   LEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVLL---------- 55
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           K+  D +A  K        G T LH+AA  G+ + V++LL   A
Sbjct: 56  ----------------KAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A         D    G TPLH AA  G+L+  +VLL  GA   + +  G  P D+A 
Sbjct: 93  DVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Query: 181 MWGRHWLEPLLAPSS 195
             G   +  +L  ++
Sbjct: 143 DNGNEDIAEVLQKAA 157

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV-PSVPFEV 61
           A R GH EV + LL  +  V  A     +T LH AA  GH   ++L++ +   P++    
Sbjct: 54  AARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA 112
Query: 62  MNT--QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL--D 117
            +T   I    G   +V +  ++ A    + K    G T LH+AA  G     +LLL  D
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKK---GFTPLHVAAKYGKVRVAELLLERD 169
Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
            H N +               G TPLH A    NL   ++LL RG S  S   NG+ PL 
Sbjct: 170 AHPNAAGKN------------GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217
Query: 178 VA 179
           +A
Sbjct: 218 IA 219

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G T LH+AA NG+ + V++LL   A+V+AV            AG TPL  AA 
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AGMTPLRLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + +  G  PL +A M+G    +E LL   +D
Sbjct: 90  FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D  SG T LH AA  GH+  + ++           
Sbjct: 19  LEAARAGQDDEVRILMANGADVNATDA-SGLTPLHLAATYGHLEIVEVL----------- 66
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          +K   D +A+          G T LH+AAL G+ + V++LL   A
Sbjct: 67  ---------------LKHGADVNAIDIM-------GSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+AV             G TPLH AA  G+L+  +VLL  GA   + +  G    D++ 
Sbjct: 105 DVNAVDT----------WGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
             G   L  +L
Sbjct: 155 DNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G+T LH+AA  G+ + V++LL   A+V+A+             GSTPLH AA 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------MGSTPLHLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   +++  G  PL +A + G    +E LL   +D
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 44/179 (24%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D+  G T LH    NGH+  I +++          
Sbjct: 19  LEAARAGQDDEVRILMANGADVNANDWF-GITPLHLVVNNGHLEIIEVLL---------- 67
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           K   D       VN +   G T LH+AA  G+ + V++LL   A
Sbjct: 68  ----------------KYAAD-------VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           +V+A+ +           G TPLH AA  G+L+  +VLL  GA   + +  G    D++
Sbjct: 105 DVNAMDYQ----------GYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           GIT LH+   NG+ + +++LL   A+V+A             +G TPLH AA  G+L+  
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASD----------KSGWTPLHLAAYRGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
           +VLL  GA   +++  G+ PL +A   G    +E LL   +D
Sbjct: 97  EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G+T LH+AA  G+ + V++LL   A+V+A+             GSTPLH AA 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------XGSTPLHLAAL 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   +++  G  PL +A + G    +E LL   +D
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T LHMAA  G+ + V++LL   A+V+AV  +          G+TPLH AA  G+L+  
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTTPLHLAASLGHLEIV 84
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
           +VLL  GA   + +  G  PL +A  WG    +E LL   +D
Sbjct: 85  EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D   G T LH AA  GH+  + ++           
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAKDK-DGYTPLHLAAREGHLEIVEVL----------- 66
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          +K+  D +A  K        G T LH+AA  G+ + V++LL   A
Sbjct: 67  ---------------LKAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A              G TPLH AA  G+L+  +VLL  GA   + +  G    D++ 
Sbjct: 105 DVNAKDKD----------GYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
             G   L  +L
Sbjct: 155 DNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD----------GYTPLHLAAR 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 90  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 83/191 (43%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D   G T LH AA  GH+  + +++          
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLL---------- 67
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           K+  D +AL  F       G T LH+AA  G+ + V++LL   A
Sbjct: 68  ----------------KNGADVNALD-F------SGSTPLHLAAKRGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A         D IG  STPLH AA  G+L+  +VLL  GA   + +  G    D++ 
Sbjct: 105 DVNA--------DDTIG--STPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
             G   L  +L
Sbjct: 155 DNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T LH+AA  G+ + V++LL   A+V+A+ F          +GSTPLH AA  G+L+  
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALDF----------SGSTPLHLAAKRGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
           +VLL  GA   + +  G  PL +A   G    +E LL   +D
Sbjct: 97  EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 43/135 (31%)
Query: 29  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
           +GRT LH AA NGH+  ++L++                          ++  D       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL--------------------------EAGAD------- 27
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 149 GGNLKCCQVLLSRGA 163
            G+L+  ++LL  GA
Sbjct: 78  NGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA  G+L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51
Query: 156 QVLLSRGASRMSLNCNGWLPLDVA 179
           ++LL  GA   + + NG  PL +A
Sbjct: 52  KLLLEAGADVNAKDKNGRTPLHLA 75

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN A   G T LH+AA  G+ + V++LL   A+V+A    Y T       GSTPLH AA 
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDT------LGSTPLHLAAH 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + + NG  PL +A   G    +E LL   +D
Sbjct: 90  FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 44/191 (23%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+    +V   D   G T LH AA  GH   + +++          
Sbjct: 19  LEAARAGQDDEVRILMANGADVNAHDD-QGSTPLHLAAWIGHPEIVEVLL---------- 67
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           K   D       VN     G T LH+AA NG+ + V++LL   A
Sbjct: 68  ----------------KHGAD-------VNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +V+A   +          G TPLH AA  G+L+  +VLL  GA   + +  G    D++ 
Sbjct: 105 DVNAQDAY----------GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Query: 181 MWGRHWLEPLL 191
             G   L  +L
Sbjct: 155 DNGNEDLAEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN +   G T LH+AA  G+ + V++LL   A+V+A       S+     G TPLH AA 
Sbjct: 40  VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-----DDSL-----GVTPLHLAAD 89
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
            G+L+  +VLL  GA   + + NG+ PL +A   G    +E LL   +D
Sbjct: 90  RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW----------GRTPLHLAAT 89
Query: 149 GGNLKCCQVLLSRGA 163
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----------SWGRTPLHLAAT 89
Query: 149 GGNLKCCQVLLSRGA 163
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW----------GRTPLHLAAT 89
Query: 149 GGNLKCCQVLLSRGA 163
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 98  TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
           +AL +A+  GY D V LLL+   +++   ++          G TPL +A  G ++KC + 
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEA 120
Query: 158 LLSRGASRMSLNCNGWLPLDVA 179
           LL+RGA   +   +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 98  TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
           +AL +A+  GY D V LLL+   +++   ++          G TPL +A  G ++KC + 
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVHGNHVKCVEA 120
Query: 158 LLSRGASRMSLNCNGWLPLDVA 179
           LL+RGA   +   +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN     G+T LH+AA+N + + V++LL   A+V+A+        D I  G TPLH  A 
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--------DAI--GETPLHLVAM 89
Query: 149 GGNLKCCQVLLSRGA 163
            G+L+  +VLL  GA
Sbjct: 90  YGHLEIVEVLLKHGA 104

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T LH+AA  G+ + V++LL   A+V+A              G TPLH AA  G+L+  
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLLKNGADVNAKD----------SLGVTPLHLAARRGHLEIV 96
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 196
           +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 97  EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           +N    G  T LH+AA +G+ D VQ LL   A+++AV  H          G+ PLH+A  
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 114
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
            G  +  + L++ GA     N  G +P+D A+
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           +N    G  T LH+AA +G+ D VQ LL   A+++AV  H          G+ PLH+A  
Sbjct: 60  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 109
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
            G  +  + L++ GA     N  G +P+D A+
Sbjct: 110 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 57/193 (29%)
Query: 10  EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 69
           E+ + +L  +   TR D  S RTALH+A   GH   +  ++   VP              
Sbjct: 21  ELKERILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVP-------------- 65
Query: 70  RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT--- 126
                              VN   D G + LH+AA  G  + V+ LL   A+V+AV    
Sbjct: 66  -------------------VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Query: 127 ---FHYGTSMD-------LIGAGSTP----------LHFAACGGNLKCCQVLLSRGASRM 166
               HY  S +       L+  G+ P          +H AA  GNLK   +LL   AS  
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 167 SLNCNGWLPLDVA 179
             +  G  PL +A
Sbjct: 167 IQDTEGNTPLHLA 179

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 98  TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
           TALH A   G+ + V+ LL L   V+          D   AG +PLH AA  G  +  + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGXDEIVKA 91
Query: 158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 57/193 (29%)
Query: 10  EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 69
           E+ + +L  +   TR D  S RTALH+A   GH   +  ++   VP              
Sbjct: 21  ELKERILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVP-------------- 65
Query: 70  RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT--- 126
                              VN   D G + LH+AA  G  + V+ LL   A+V+AV    
Sbjct: 66  -------------------VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNG 106
Query: 127 ---FHYGTSMD-------LIGAGSTP----------LHFAACGGNLKCCQVLLSRGASRM 166
               HY  S +       L+  G+ P          +H AA  GNLK   +LL   AS  
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 167 SLNCNGWLPLDVA 179
             +  G  PL +A
Sbjct: 167 IQDTEGNTPLHLA 179

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 98  TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
           TALH A   G+ + V+ LL L   V+          D   AG +PLH AA  G  +  + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 48  LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 107
           L+V +   S   E +   I  D+    S+ ++ DQ +             TALH A   G
Sbjct: 9   LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 52
Query: 108 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 167
           + + V+ LL L   V+          D   AG +PLH AA  G  +  + LL +GA   +
Sbjct: 53  HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 168 LNCNGWLPLDVARMWGRHWLEPLL 191
           +N NG  PL  A    RH +  +L
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVML 126

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 33/138 (23%)
Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G TALH AA+  ++    +V+ +  P + FE M +++                       
Sbjct: 37  GETALHIAALYDNLEA-AMVLMEAAPELVFEPMTSELYE--------------------- 74
Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSA----VTFHYGTSMDLIGAGSTPLHF 145
                 G TALH+A +N   + V+ LL   A+VSA      FHY    +LI  G  PL F
Sbjct: 75  ------GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY-RPHNLIYYGEHPLSF 127
Query: 146 AACGGNLKCCQVLLSRGA 163
           AAC G+ +  ++L+  GA
Sbjct: 128 AACVGSEEIVRLLIEHGA 145

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 48  LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 107
           L+V +   S   E +   I  D+    S+ ++ DQ +             TALH A   G
Sbjct: 8   LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 51
Query: 108 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 167
           + + V+ LL L   V+          D   AG +PLH AA  G  +  + LL +GA   +
Sbjct: 52  HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 168 LNCNGWLPLDVARMWGRHWLEPLL 191
           +N NG  PL  A    RH +  +L
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVML 125

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 22/192 (11%)
Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           M+A    H E V+ L+     V   D   G T LH AA  GH   ++ ++++    V   
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDV--- 104
Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA------LHMAALNGYFDCVQL 114
             N Q +G                +   ++K +D  I        LH AA +G  D  ++
Sbjct: 105 --NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 115 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 174
           LL    ++ AV  H          G +PLH AA      C  + LSR +     N  G  
Sbjct: 163 LLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212
Query: 175 PLDVARMWGRHW 186
           PL  A +  + W
Sbjct: 213 PLQCASLNSQVW 224

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T LH AA NG+ + V+ LL   A+V+A       S D    G+TPLH AA  G+ +  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKD----GNTPLHLAAKNGHAEIV 58
Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           ++LL++GA   + + +G  P  +A+  G H +  LL
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   + G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED----------NFGITPLHLAAI 89
Query: 149 GGNLKCCQVLLSRGA 163
            G+L+  +VLL  GA
Sbjct: 90  RGHLEIVEVLLKHGA 104

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G T LH A++ G +           PSV + + N       G   +VK            
Sbjct: 10  GETLLHIASIKGDI-----------PSVEYLLQN-------GSDPNVKDH---------- 41
Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
                 G T LH A  +G+   V+LLL   A V+   +             +PLH AA  
Sbjct: 42  -----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKN 86
Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLD 177
           G++   ++LLS GASR ++N  G  P+D
Sbjct: 87  GHVDIVKLLLSYGASRNAVNIFGLRPVD 114

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           +N A   G+TALH A ++   D V+ L++  AN++               G  PLH AA 
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD----------NEGWIPLHAAAS 115
Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
            G L   + L+S+GA   ++N  G  PLD+
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           VN   + G+T L++A  +G+ + V++LL   A+V+AV        D IG   TPLH AA 
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--------DAIGF--TPLHLAAF 89
Query: 149 GGNLKCCQVLLSRGA 163
            G+L+  +VLL  GA
Sbjct: 90  IGHLEIAEVLLKHGA 104

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 49/182 (26%)
Query: 1   MQACRYGHWEVVQTLLL-FRCNVTRADYLSGR--TALHFAAVNGHVRCIRLVVADFVPSV 57
           ++A R G+ E +  LL     N   +D   GR  T LH AA    VR ++L++       
Sbjct: 29  LEAARSGNEEKLMALLTPLNVNCHASD---GRKSTPLHLAAGYNRVRIVQLLLQH----- 80
Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                          G+ V +K               GG+  LH A   G+++  +LLL 
Sbjct: 81  ---------------GADVHAK-------------DKGGLVPLHNACSYGHYEVTELLLK 112
Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             A V+A        MDL     TPLH AA    ++ C +LLS GA    +NC+G   +D
Sbjct: 113 HGACVNA--------MDLWQ--FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVD 162
Query: 178 VA 179
           +A
Sbjct: 163 MA 164

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GNAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLENQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G   +H AA  G  D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGQLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 156 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 191
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 94  DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
           D GITALH A   G+ + V+ L+    NV+A              G TPLH AA   N++
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 154 CCQVLLSRGASRMSL 168
            C+ L+  GA+  ++
Sbjct: 118 VCKFLVESGAAVFAM 132

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 94  DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
           D GITALH A   G+ + V+ L+    NV+A              G TPLH AA   N++
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 154 CCQVLLSRGASRMSL 168
            C+ L+  GA+  ++
Sbjct: 118 VCKFLVESGAAVFAM 132

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 95  GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
           GG+  LH A   G+++  +LL+   A V+                 TPLH AA  G  + 
Sbjct: 74  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL----------WKFTPLHEAAAKGKYEI 123
Query: 155 CQVLLSRGASRMSLNCNGWLPLDVAR 180
           C++LL  GA     N +G  PLD+ +
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 21/159 (13%)
Query: 30  GRTALHFAAVNGHVRCIRLVVADFVP-SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
           G+TA H A  +    C+R ++    P ++  E  N   +G      +V ++C Q  +   
Sbjct: 79  GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN--YDGLTALHVAVNTEC-QETVQLL 135
Query: 89  VNKAAD-------GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 141
           + + AD        G + L  A  N     VQLLL   ANV+A  +          +GS+
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY----------SGSS 185
Query: 142 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
            LH A+  G L   + L+  GA     NC+   PL VAR
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 224

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 95  GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
           GG+  LH A   G+++  +LL+   A V+                 TPLH AA  G  + 
Sbjct: 76  GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK----------FTPLHEAAAKGKYEI 125
Query: 155 CQVLLSRGASRMSLNCNGWLPLDVAR 180
           C++LL  GA     N +G  PLD+ +
Sbjct: 126 CKLLLQHGADPTKKNRDGNTPLDLVK 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-28
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-30
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-21
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-30
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-26
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-29
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-26
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-29
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-28
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-24
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-29
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-27
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-28
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-25
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-24
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-26
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-27
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-26
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-27
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-25
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-16
2rfa_A	232	Transient receptor potential cation channel subfa	4e-27
2rfa_A	232	Transient receptor potential cation channel subfa	3e-24
2rfa_A	232	Transient receptor potential cation channel subfa	1e-19
2rfa_A	232	Transient receptor potential cation channel subfa	9e-17
2rfa_A	232	Transient receptor potential cation channel subfa	4e-13
2rfa_A	232	Transient receptor potential cation channel subfa	1e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-27
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-21
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-26
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-26
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-26
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-26
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-26
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-26
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-25
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-17
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-25
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-24
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-15
2etb_A	256	Transient receptor potential cation channel subfam	3e-24
2etb_A	256	Transient receptor potential cation channel subfam	1e-22
2etb_A	256	Transient receptor potential cation channel subfam	3e-21
2etb_A	256	Transient receptor potential cation channel subfam	2e-13
2etb_A	256	Transient receptor potential cation channel subfam	8e-13
2pnn_A	273	Transient receptor potential cation channel subfa	7e-24
2pnn_A	273	Transient receptor potential cation channel subfa	6e-18
2pnn_A	273	Transient receptor potential cation channel subfa	9e-18
2pnn_A	273	Transient receptor potential cation channel subfa	1e-17
2pnn_A	273	Transient receptor potential cation channel subfa	9e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-15
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-23
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-21
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-21
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-18
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-17
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-08
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-15
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-09

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  117 bits (295), Expect = 2e-31
 Identities = 40/186 (21%), Positives = 66/186 (35%), Gaps = 50/186 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
            Q    G    + T +     +   D   G T L +AA +G +  +  ++   AD     
Sbjct: 8   HQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGAD----- 61

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                                G  +AL +A   GY D V++LLD
Sbjct: 62  -------------------------------PQLLGKGRESALSLACSKGYTDIVKMLLD 90

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
              +V+   ++          G TPL +A  G ++KC ++LL  GA       +G+  +D
Sbjct: 91  CGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD 140

Query: 178 VARMWG 183
           +A   G
Sbjct: 141 LAVALG 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  107 bits (270), Expect = 6e-28
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 50/166 (30%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           M A  +G   VV+ LL    +          +AL  A   G+   +++++    D     
Sbjct: 41  MWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGYTDIVKMLLDCGVD----- 94

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN+    G T L  A    +  CV++LL+
Sbjct: 95  -------------------------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
             A+ +  T           +G   +  A   G     QV+ S   
Sbjct: 124 SGADPTIET----------DSGYNSMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 88.2 bits (220), Expect = 6e-21
 Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 49/154 (31%)

Query: 29  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 85
           +   ++H  A  G +  +   +                                      
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV--------------------------------- 28

Query: 86  SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
              +N   + G T L  AA +G    V+ LL   A+   +               + L  
Sbjct: 29  ---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG----------RESALSL 75

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           A   G     ++LL  G      + NG  PL  A
Sbjct: 76  ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 78.6 bits (195), Expect = 2e-17
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 40/127 (31%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             AC  G+ ++V+ LL    +V   D+ +G T L +A    HV+C+++++   AD     
Sbjct: 74  SLACSKGYTDIVKMLLDCGVDVNEYDW-NGGTPLLYAVHGNHVKCVKMLLESGAD----- 127

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                               D G  ++ +A   GY    Q++  
Sbjct: 128 -------------------------------PTIETDSGYNSMDLAVALGYRSVQQVIES 156

Query: 118 LHANVSA 124
               +  
Sbjct: 157 HLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 137 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           GA S  +H  A  G +      + +       +  G+ PL  A
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA 43

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  116 bits (292), Expect = 2e-30
 Identities = 35/183 (19%), Positives = 55/183 (30%), Gaps = 43/183 (23%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
            +A + G+   ++  L  R  V   D  +G TAL++A   GH   + ++           
Sbjct: 78  HEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKDIVEMLFT--------- 127

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           +   +       +N+    G TALH AA  GY D VQLLL   A
Sbjct: 128 ----------------QPNIE-------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGA 164

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
                                    A         +      A R   N   +L  + + 
Sbjct: 165 RTDLRNIE----------KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSD 214

Query: 181 MWG 183
           +  
Sbjct: 215 LEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (257), Expect = 1e-25
 Identities = 35/187 (18%), Positives = 54/187 (28%), Gaps = 56/187 (29%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
            +    G   ++ +  +           S    LH AA  G++  +R  +          
Sbjct: 50  WKGTSKGRTGLIPSNYVAEQAE------SIDNPLHEAAKRGNLSWLRECLDNRVG----- 98

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN     G TAL+ A   G+ D V++L  
Sbjct: 99  -------------------------------VNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 118 LH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
                ++               G T LH AA  G     Q+LL++GA     N    L  
Sbjct: 128 QPNIELNQQNKL----------GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177

Query: 177 DVARMWG 183
           D+A    
Sbjct: 178 DMATNAA 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 91.5 bits (228), Expect = 2e-21
 Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 50/185 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
            +A           L +   ++     +   T        G       ++          
Sbjct: 17  FRALYTFEPRTPDELYIEEGDIIYITDM-SDTNWWKGTSKGRT----GLIP--------- 62

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                                    S +V + A+     LH AA  G    ++  LD   
Sbjct: 63  -------------------------SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRV 97

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVA 179
            V+ +             GST L++A  GG+    ++L +         N  G   L  A
Sbjct: 98  GVNGLDKA----------GSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147

Query: 180 RMWGR 184
              G 
Sbjct: 148 AWKGY 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 20/154 (12%), Positives = 37/154 (24%), Gaps = 51/154 (33%)

Query: 3   ACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
           AC  GH ++V+ L       + + +   G TALH AA  G+   ++L++   A       
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQLLLAKGAR------ 165

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                          +        A  MA        ++     
Sbjct: 166 ------------------------------TDLRNIEKKLAFDMATNAACASLLKKKQGT 195

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
            A  +                      +    + 
Sbjct: 196 DAVRTLSN----------AEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 25/113 (22%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 85  LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT------FHYGTS---MDL 135
           +SK   K    G   +  A           L     ++  +T      +  GTS     L
Sbjct: 1   MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 136 IGA---------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           I +            PLH AA  GNL   +  L        L+  G   L  A
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA 113

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 12/110 (10%), Positives = 23/110 (20%), Gaps = 34/110 (30%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G+ ++VQ LL         +    + A   A                       
Sbjct: 145 HAAAWKGYADIVQLLLAKGARTDLRNI-EKKLAFDMATNAACA----------------S 187

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 110
           +              +K K    A+      +          + L  +  
Sbjct: 188 L--------------LKKKQGTDAV---RTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 5/46 (10%), Positives = 9/46 (19%)

Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
           G   +  A      +    L       + +              GR
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  114 bits (288), Expect = 8e-30
 Identities = 40/177 (22%), Positives = 61/177 (34%), Gaps = 37/177 (20%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A      E+ + LL   C+    D+  G T LH A   G +  + ++             
Sbjct: 52  AVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLACEQGCLASVGVLT------------ 98

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                            C    L   +      G T LH+A+++GY   V+LL+ L A+V
Sbjct: 99  ---------------QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           +A              G T LH A    N     +LL  GA    +   G+ P  + 
Sbjct: 144 NAQEPCN---------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  103 bits (260), Expect = 9e-26
 Identities = 37/179 (20%), Positives = 55/179 (30%), Gaps = 55/179 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYL-----SGRTALHFAAVNGHVRCIRLVV---ADFV 54
           AC  G    V  L            L     +G T LH A+++G++  + L+V   AD  
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-- 142

Query: 55  PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQ 113
                                             VN +    G TALH+A      D V 
Sbjct: 143 ----------------------------------VNAQEPCNGRTALHLAVDLQNPDLVS 168

Query: 114 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 172
           LLL   A+V+ VT+           G +P        + +  Q L       + +    
Sbjct: 169 LLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 93.0 bits (232), Expect = 6e-22
 Identities = 35/188 (18%), Positives = 56/188 (29%), Gaps = 55/188 (29%)

Query: 3   ACRYGH----WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVP 55
           A  +       EV++ +      +   + L  +T LH A +         ++    D   
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEALLGAGCD--- 70

Query: 56  SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 115
                                                   G T LH+A   G    V +L
Sbjct: 71  ---------------------------------PELRDFRGNTPLHLACEQGCLASVGVL 97

Query: 116 LDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN----CN 171
                     +    T+ +    G T LH A+  G L   ++L+S GA    +N    CN
Sbjct: 98  TQSCTTPHLHSILKATNYN----GHTCLHLASIHGYLGIVELLVSLGA---DVNAQEPCN 150

Query: 172 GWLPLDVA 179
           G   L +A
Sbjct: 151 GRTALHLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.2 bits (230), Expect = 1e-21
 Identities = 29/158 (18%), Positives = 44/158 (27%), Gaps = 49/158 (31%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK-- 87
           G + LH A ++        V+                               +       
Sbjct: 8   GDSFLHLAIIHEEKALTMEVI-------------------------------RQVKGDLA 36

Query: 88  FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
           F+N   +   T LH+A +    +  + LL    +     F           G+TPLH A 
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR----------GNTPLHLAC 86

Query: 148 CGGNLKCCQVLLSRGASRMSL------NCNGWLPLDVA 179
             G L    VL     +          N NG   L +A
Sbjct: 87  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 74.1 bits (183), Expect = 3e-15
 Identities = 21/148 (14%), Positives = 38/148 (25%), Gaps = 49/148 (33%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A  +G+  +V+ L+    +V   +  +GRTALH A    +   + L++   AD       
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD------- 176

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN+    G +   +          Q L  L 
Sbjct: 177 -----------------------------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
                +                   +  
Sbjct: 208 LENLQMLPE----------SEDEESYDT 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  115 bits (290), Expect = 2e-29
 Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 37/200 (18%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A   G+ ++ + L+    +V   +   G T L  A                      E++
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEEAME----------------ELL 155

Query: 63  NTQIEGDRGDGSS---VKSKCDQSALSKF-------VNKAADGGITALHMAALNGYFDCV 112
             ++     D  +    + +       ++         + A  G TALH+AA  GY + +
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 113 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 172
           +LL+    +V+   +           G TPLH AA  G  + C++L+       ++N  G
Sbjct: 216 KLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 173 WLPLDVARMWGRHWLEPLLA 192
               DVA      +LE L  
Sbjct: 266 QTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  104 bits (262), Expect = 2e-25
 Identities = 37/205 (18%), Positives = 63/205 (30%), Gaps = 59/205 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
            QAC   + ++V+ L+    N+ + D   G   LH AA  G++     ++   A      
Sbjct: 78  HQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAH----- 131

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          V      G T L +A      + +Q  ++
Sbjct: 132 -------------------------------VGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 118 LH-ANVSAVTFHYGTSMD-------LI--GA--------GSTPLHFAACGGNLKCCQVLL 159
               ++ A        +        L             G T LH AA  G  +  ++L+
Sbjct: 161 RQGVDIEA-ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219

Query: 160 SRGASRMSLNCNGWLPLDVARMWGR 184
                    + +GW PL  A  WG+
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGK 244

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  101 bits (253), Expect = 3e-24
 Identities = 37/180 (20%), Positives = 60/180 (33%), Gaps = 51/180 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
               G    ++  ++ R                 A  +G    +  ++   AD       
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLERGAD------- 65

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        +N A   G+TALH A ++   D V+ L++  
Sbjct: 66  -----------------------------INYANVDGLTALHQACIDDNVDMVKFLVENG 96

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           AN++               G  PLH AA  G L   + L+S+GA   ++N  G  PLD+A
Sbjct: 97  ANINQPDNE----------GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.9 bits (237), Expect = 4e-22
 Identities = 38/163 (23%), Positives = 57/163 (34%), Gaps = 50/163 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           AC  G  E V  LL    ++  A+   G TALH A ++ +V  ++ +V   A+       
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDNVDMVKFLVENGAN------- 98

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        +N+  + G   LH AA  GY D  + L+   
Sbjct: 99  -----------------------------INQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
           A+V AV             G TPL  A      +  Q  ++R 
Sbjct: 130 AHVGAVNSE----------GDTPLDIAEEEAMEELLQNEVNRQ 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 31/164 (18%), Positives = 47/164 (28%), Gaps = 50/164 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
             R    +  Q L     N  R    SG TALH AA  G+   ++L++    D       
Sbjct: 173 EERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAAKGYTEVLKLLIQARYD------- 224

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN     G T LH AA  G  +  ++L++  
Sbjct: 225 -----------------------------VNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
            ++ AV             G T    A         ++   +  
Sbjct: 256 CDMEAVNKV----------GQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.5 bits (184), Expect = 4e-15
 Identities = 23/150 (15%), Positives = 38/150 (25%), Gaps = 44/150 (29%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
            +         G                    +   +          K K          
Sbjct: 8   QKRNEQLKRWIGSE----------------TDLEPPVVK----RKKTKVK---------- 37

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
                        A  +G  + V  LL+  A+++               G T LH A   
Sbjct: 38  ----FDDGAVFLAACSSGDTEEVLRLLERGADINYANVD----------GLTALHQACID 83

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            N+   + L+  GA+    +  GW+PL  A
Sbjct: 84  DNVDMVKFLVENGANINQPDNEGWIPLHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.7 bits (151), Expect = 7e-11
 Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 12/89 (13%)

Query: 91  KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 150
             A        +    G    ++  +          F  G               A   G
Sbjct: 4   ADAKQK-RNEQLKRWIGSETDLEPPVVKRKKTKV-KFDDG----------AVFLAACSSG 51

Query: 151 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           + +    LL RGA     N +G   L  A
Sbjct: 52  DTEEVLRLLERGADINYANVDGLTALHQA 80

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 40/125 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A   G+ EV++ L+  R +V   DY  G T LH AA  G     R++V    D       
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGKEEACRILVENLCD------- 257

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        +      G TA  +A  +      +L    +
Sbjct: 258 -----------------------------MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

Query: 120 ANVSA 124
              S 
Sbjct: 289 LLHSE 293

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  111 bits (280), Expect = 3e-29
 Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 51/186 (27%)

Query: 3   ACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
            CR G+   V+  L     ++ + D   G + LH+A   G    + +++   A       
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGAR------ 64

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                         +N    G  T LH+AA +G+ D VQ LL  
Sbjct: 65  ------------------------------INVMNRGDDTPLHLAASHGHRDIVQKLLQY 94

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
            A+++AV  H          G+ PLH+A   G  +  + L++ GA     N  G +P+D 
Sbjct: 95  KADINAVNEH----------GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDK 144

Query: 179 ARMWGR 184
           A+   R
Sbjct: 145 AKAPLR 150

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 98.3 bits (246), Expect = 2e-24
 Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 50/164 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           ACR G   VV+ L++    +   +     T LH AA +GH   ++ ++   AD       
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNR-GDDTPLHLAASHGHRDIVQKLLQYKAD------- 97

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        +N   + G   LH A   G     + L+   
Sbjct: 98  -----------------------------INAVNEHGNVPLHYACFWGQDQVAEDLVANG 128

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           A VS    +          G  P+  A         +     G 
Sbjct: 129 ALVSICNKY----------GEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 85.6 bits (213), Expect = 7e-20
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 42/156 (26%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
               +      G+   +RL +                  D  +                +
Sbjct: 5   FMDDIFTQCREGNAVAVRLWL------------------DNTEND--------------L 32

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           N+  D G + LH A   G    V++L+   A ++ +               TPLH AA  
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN------RG----DDTPLHLAASH 82

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           G+    Q LL   A   ++N +G +PL  A  WG+ 
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 76.7 bits (190), Expect = 9e-17
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 40/129 (31%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A  +GH ++VQ LL ++ ++   +   G   LH+A   G  +    +V   A        
Sbjct: 79  AASHGHRDIVQKLLQYKADINAVNE-HGNVPLHYACFWGQDQVAEDLVANGAL------- 130

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        V+     G   +  A         +    + 
Sbjct: 131 -----------------------------VSICNKYGEMPVDKAKAPLRELLRERAEKMG 161

Query: 120 ANVSAVTFH 128
            N++ + + 
Sbjct: 162 QNLNRIPYK 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  117 bits (296), Expect = 3e-29
 Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 50/188 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A + GH E+V  LL  + N    +  SG T LH  A  GHV    +++          
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVM----- 303

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          V+     G T LH+A+  G    V+ LL 
Sbjct: 304 -------------------------------VDATTRMGYTPLHVASHYGNIKLVKFLLQ 332

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             A+V+A T            G +PLH AA  G+     +LL  GAS   ++ +G  PL 
Sbjct: 333 HQADVNAKTKL----------GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382

Query: 178 VARMWGRH 185
           +A+  G  
Sbjct: 383 IAKRLGYI 390

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (291), Expect = 2e-28
 Identities = 50/182 (27%), Positives = 70/182 (38%), Gaps = 50/182 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A R GH EV + LL  +  V        +T LH AA  GH   ++L++   A+     
Sbjct: 52  HMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNAN----- 105

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           N A   G T LH+AA  G+ + V  LL+
Sbjct: 106 -------------------------------PNLATTAGHTPLHIAAREGHVETVLALLE 134

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             A+ + +T            G TPLH AA  G ++  ++LL R A   +   NG  PL 
Sbjct: 135 KEASQACMTKK----------GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLH 184

Query: 178 VA 179
           VA
Sbjct: 185 VA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  115 bits (290), Expect = 2e-28
 Identities = 46/182 (25%), Positives = 63/182 (34%), Gaps = 50/182 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A R GH E V  LL    +        G T LH AA  G VR   L++   A      
Sbjct: 118 HIAAREGHVETVLALLEKEASQACMTK-KGFTPLHVAAKYGKVRVAELLLERDAH----- 171

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           N A   G+T LH+A  +   D V+LLL 
Sbjct: 172 -------------------------------PNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
              +  +  ++          G TPLH AA    ++  + LL  G S  + +  G  PL 
Sbjct: 201 RGGSPHSPAWN----------GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250

Query: 178 VA 179
           +A
Sbjct: 251 LA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  114 bits (289), Expect = 3e-28
 Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 50/182 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A +YG   V + LL    +   A   +G T LH A  + ++  ++L++          
Sbjct: 151 HVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGS----- 204

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           +  A  G T LH+AA     +  + LL 
Sbjct: 205 -------------------------------PHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
              + +A +            G TPLH AA  G+ +   +LLS+ A+    N +G  PL 
Sbjct: 234 YGGSANAESVQ----------GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283

Query: 178 VA 179
           + 
Sbjct: 284 LV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  113 bits (286), Expect = 7e-28
 Identities = 48/182 (26%), Positives = 69/182 (37%), Gaps = 50/182 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A   GH  +V+ LL    +   ++     T LH AA  GH    + ++   A      
Sbjct: 19  HVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAK----- 72

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN  A    T LH AA  G+ + V+LLL+
Sbjct: 73  -------------------------------VNAKAKDDQTPLHCAARIGHTNMVKLLLE 101

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
            +AN +  T           AG TPLH AA  G+++    LL + AS+  +   G+ PL 
Sbjct: 102 NNANPNLAT----------TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH 151

Query: 178 VA 179
           VA
Sbjct: 152 VA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  110 bits (277), Expect = 1e-26
 Identities = 50/182 (27%), Positives = 66/182 (36%), Gaps = 50/182 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A R GH  +V+ LL    N   A   +G T LH AA  GHV  +  ++   A      
Sbjct: 85  HCAARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGHVETVLALLEKEAS----- 138

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                                 G T LH+AA  G     +LLL+
Sbjct: 139 -------------------------------QACMTKKGFTPLHVAAKYGKVRVAELLLE 167

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             A+ +A   +          G TPLH A    NL   ++LL RG S  S   NG+ PL 
Sbjct: 168 RDAHPNAAGKN----------GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217

Query: 178 VA 179
           +A
Sbjct: 218 IA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  109 bits (276), Expect = 1e-26
 Identities = 43/187 (22%), Positives = 62/187 (33%), Gaps = 50/187 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A +    EV ++LL +  +        G T LH AA  GH   + L++   A+     
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMVALLLSKQAN----- 270

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           N     G+T LH+ A  G+     +L+ 
Sbjct: 271 -------------------------------GNLGNKSGLTPLHLVAQEGHVPVADVLIK 299

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
               V A T            G TPLH A+  GN+K  + LL   A   +    G+ PL 
Sbjct: 300 HGVMVDATTRM----------GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH 349

Query: 178 VARMWGR 184
            A   G 
Sbjct: 350 QAAQQGH 356

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (272), Expect = 5e-26
 Identities = 41/185 (22%), Positives = 63/185 (34%), Gaps = 56/185 (30%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A  + + ++V+ LL    +     + +G T LH AA    V   R ++          
Sbjct: 184 HVAVHHNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGS----- 237

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           N  +  G+T LH+AA  G+ + V LLL 
Sbjct: 238 -------------------------------ANAESVQGVTPLHLAAQEGHAEMVALLLS 266

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC---NGWL 174
             AN +               G TPLH  A  G++    VL+  G     ++     G+ 
Sbjct: 267 KQANGNLGNKS----------GLTPLHLVAQEGHVPVADVLIKHGV---MVDATTRMGYT 313

Query: 175 PLDVA 179
           PL VA
Sbjct: 314 PLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  101 bits (253), Expect = 2e-23
 Identities = 36/184 (19%), Positives = 58/184 (31%), Gaps = 53/184 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
             + GH  V   L+     V       G T LH A+  G+++ ++ ++   AD       
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGNIKLVKFLLQHQAD------- 336

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN     G + LH AA  G+ D V LLL   
Sbjct: 337 -----------------------------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL---LSRGASRMSLNCNGWLPL 176
           A+ + V+            G+TPL  A   G +    VL       +  +  + +     
Sbjct: 368 ASPNEVSSD----------GTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417

Query: 177 DVAR 180
           +   
Sbjct: 418 ETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.8 bits (229), Expect = 2e-20
 Identities = 36/163 (22%), Positives = 53/163 (32%), Gaps = 50/163 (30%)

Query: 20  CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSV 76
            +       SG T LH A+  GH+  ++ ++   A                         
Sbjct: 5   ISGGGGGE-SGLTPLHVASFMGHLPIVKNLLQRGAS------------------------ 39

Query: 77  KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI 136
                        N +     T LHMAA  G+ +  + LL   A V+A            
Sbjct: 40  ------------PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD-------- 79

Query: 137 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
               TPLH AA  G+    ++LL   A+       G  PL +A
Sbjct: 80  --DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 1e-15
 Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 58/167 (34%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A  YG+ ++V+ LL  + +V       G + LH AA  GH   + L++   A      
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGAS----- 369

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           N+ +  G T L +A   GY     +L  
Sbjct: 370 -------------------------------PNEVSSDGTTPLAIAKRLGYISVTDVLKV 398

Query: 118 LHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGA 163
           +            + + +      +                +L    
Sbjct: 399 VTDE--------TSFVLVSDKHRMSFPETV---------DEILDVSE 428

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  111 bits (280), Expect = 3e-29
 Identities = 43/187 (22%), Positives = 73/187 (39%), Gaps = 51/187 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCN-VTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPS 56
            Q    G  + ++  L    N V + D   G T L +A+  G +  +R ++   AD    
Sbjct: 7   HQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGAD---- 61

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                                            +  A    +AL +A+  GY D V LLL
Sbjct: 62  --------------------------------PHILAKERESALSLASTGGYTDIVGLLL 89

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
           +   +++   ++          G TPL +A  G ++KC + LL+RGA   +   +G+ P+
Sbjct: 90  ERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139

Query: 177 DVARMWG 183
           D+A   G
Sbjct: 140 DLAVALG 146

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (279), Expect = 3e-29
 Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 50/178 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           + A  +G  E V+ LL +  +          +AL  A+  G+   + L++    D     
Sbjct: 41  IWASAFGEIETVRFLLEWGADPHILAK-ERESALSLASTGGYTDIVGLLLERDVD----- 94

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          +N     G T L  A    +  CV+ LL 
Sbjct: 95  -------------------------------INIYDWNGGTPLLYAVRGNHVKCVEALLA 123

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 175
             A+++              +G TP+  A   G  K  QV+ +        N     P
Sbjct: 124 RGADLTTEA----------DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 91.3 bits (228), Expect = 6e-22
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 48/153 (31%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
              ++H  A  G +  ++  +    + V                                
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLV-------------------------------- 29

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
              NK  + G T L  A+  G  + V+ LL+  A+   +               + L  A
Sbjct: 30  ---NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE----------RESALSLA 76

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           + GG      +LL R       + NG  PL  A
Sbjct: 77  STGGYTDIVGLLLERDVDINIYDWNGGTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 95  GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA----GSTPLHFAACGG 150
           G   ++H  A  G  D ++  L                 +L+      G TPL +A+  G
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGD-------------NLVNKPDERGFTPLIWASAFG 47

Query: 151 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            ++  + LL  GA    L       L +A
Sbjct: 48  EIETVRFLLEWGADPHILAKERESALSLA 76

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  112 bits (283), Expect = 5e-29
 Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 50/188 (26%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R GH  +V  L+ +  + +  D   G + +H AA  GH   +  ++    D       
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGHTSIVAYLIAKGQD------- 134

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY-FDCVQLLLDL 118
                                        V+     G+T L  AA   +  D  +LLL  
Sbjct: 135 -----------------------------VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
           + +V+    ++          +T LH+A   GN     +LL  GA+  + N  G   LD+
Sbjct: 166 NVSVNLGDKYH---------KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216

Query: 179 ARMWGRHW 186
           A+     W
Sbjct: 217 AKQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  109 bits (275), Expect = 7e-28
 Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 52/193 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           ++A +YG +E  + L+    +V + D     T LH+AA+N  +  ++  +   A      
Sbjct: 14  VKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVKYYISKGAI----- 67

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLL 116
                                          V+    D   T LH A   G+   V  L+
Sbjct: 68  -------------------------------VDQLGGDLNSTPLHWATRQGHLSMVVQLM 96

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
              A+ S +             G + +H AA  G+      L+++G     ++ NG  PL
Sbjct: 97  KYGADPSLIDGE----------GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146

Query: 177 DVARMWGRHWLEP 189
             A     H ++P
Sbjct: 147 MWAAYRT-HSVDP 158

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 99.8 bits (250), Expect = 2e-24
 Identities = 30/182 (16%), Positives = 57/182 (31%), Gaps = 51/182 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A      ++V+  +     V +       T LH+A   GH+  +  ++   AD       
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD------- 101

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +     G + +H+AA  G+   V  L+   
Sbjct: 102 -----------------------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASR-MSLNCNGWLPLD 177
            +V  +  +          G TPL +AA   + +   ++LL+   S  +    +    L 
Sbjct: 133 QDVDMMDQN----------GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182

Query: 178 VA 179
            A
Sbjct: 183 WA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 95.2 bits (238), Expect = 1e-22
 Identities = 34/163 (20%), Positives = 50/163 (30%), Gaps = 42/163 (25%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A ++GH  +V  L+    +V   D  +G T L +AA   H     +     + +      
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTH----SVDPTRLLLTF----- 165

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                       SV                     TALH A L G    + LLL+  ANV
Sbjct: 166 ----------NVSVNLGDK------------YHKNTALHWAVLAGNTTVISLLLEAGANV 203

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 165
            A              G + L  A    N+     L     ++
Sbjct: 204 DAQNIK----------GESALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 94.0 bits (235), Expect = 3e-22
 Identities = 32/159 (20%), Positives = 50/159 (31%), Gaps = 43/159 (27%)

Query: 21  NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 80
           ++T  D       +  A   G     R +V                  + G         
Sbjct: 1   HMTHIDD-YSTWDIVKATQYGIYERCRELV------------------EAG--------Y 33

Query: 81  DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 140
           D       V +     +T LH AA+N   D V+  +   A V  +              S
Sbjct: 34  D-------VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL---------NS 77

Query: 141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           TPLH+A   G+L     L+  GA    ++  G   + +A
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.0 bits (183), Expect = 3e-15
 Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 40/128 (31%)

Query: 1   MQACRYGHW-EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPS 56
           M A    H  +  + LL F  +V   D     TALH+A + G+   I L++   A+    
Sbjct: 147 MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---- 202

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                                           V+     G +AL +A        +  L 
Sbjct: 203 --------------------------------VDAQNIKGESALDLAKQRKNVWMINHLQ 230

Query: 117 DLHANVSA 124
           +       
Sbjct: 231 EARQAKGY 238

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (287), Expect = 2e-28
 Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 51/183 (27%)

Query: 1   MQACRYGHW-EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPS 56
           ++A R G+  +++  L     N   +D     T LH AA    VR ++L++   AD    
Sbjct: 29  LEAARSGNEEKLMALLTPLNVNCHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGAD---- 83

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                                           V+    GG+  LH A   G+++  +LLL
Sbjct: 84  --------------------------------VHAKDKGGLVPLHNACSYGHYEVTELLL 111

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
              A V+A+               TPLH AA    ++ C +LLS GA    +NC+G   +
Sbjct: 112 KHGACVNAMDLW----------QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161

Query: 177 DVA 179
           D+A
Sbjct: 162 DMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  113 bits (285), Expect = 3e-28
 Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 41/179 (22%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           +QA R      V+  L       +    S  TALH A  + H +               +
Sbjct: 183 LQAAREADLAKVKKTLALEIINFKQPQ-SHETALHCAVASLHPKRK-------------Q 228

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
           V    +   +G         +       VN+     +T LH+AA   + D +++L    A
Sbjct: 229 VAELLLR--KG--------AN-------VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            ++A+             G T LH AA  G+L+ C++LLS G+    ++  G+    + 
Sbjct: 272 KMNALDSL----------GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  101 bits (254), Expect = 5e-24
 Identities = 40/193 (20%), Positives = 59/193 (30%), Gaps = 48/193 (24%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
            +A      EV   LL    + T  +   G++A+  A                      E
Sbjct: 129 HEAASKNRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPTPELR----------------E 171

Query: 61  VMNTQIEGD-------RGDGSSVK----SKCDQSALSKFVNKAADGGITALHMAALNGYF 109
            +  + +G          D + VK     +           K      TALH A  + + 
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVKKTLALEII-------NFKQPQSHETALHCAVASLHP 224

Query: 110 ---DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 166
                 +LLL   ANV+                 TPLH AA   +    +VL   GA   
Sbjct: 225 KRKQVAELLLRKGANVNEKNKD----------FMTPLHVAAERAHNDVMEVLHKHGAKMN 274

Query: 167 SLNCNGWLPLDVA 179
           +L+  G   L  A
Sbjct: 275 ALDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.9 bits (250), Expect = 2e-23
 Identities = 40/204 (19%), Positives = 55/204 (26%), Gaps = 60/204 (29%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             AC YGH+EV + LL     V   D     T LH AA    V    L++   AD     
Sbjct: 96  HNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNRVEVCSLLLSHGAD----- 149

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                                 G +A+ MA      + +     
Sbjct: 150 -------------------------------PTLVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 118 ----LHANVSAVTFHYGTSMDLI--GA--------GSTPLHFAACGG---NLKCCQVLLS 160
               L A   A           +              T LH A         +  ++LL 
Sbjct: 179 GHSLLQA---AREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235

Query: 161 RGASRMSLNCNGWLPLDVARMWGR 184
           +GA+    N +   PL VA     
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAH 259

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 1e-21
 Identities = 31/164 (18%), Positives = 42/164 (25%), Gaps = 50/164 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A  Y    +VQ LL    +V   D   G   LH A   GH     L++   A        
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDK-GGLVPLHNACSYGHYEVTELLLKHGAC------- 116

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN       T LH AA     +   LLL   
Sbjct: 117 -----------------------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           A+ + V  H          G + +  A      +         +
Sbjct: 148 ADPTLVNCH----------GKSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.3 bits (207), Expect = 9e-18
 Identities = 33/167 (19%), Positives = 48/167 (28%), Gaps = 58/167 (34%)

Query: 3   ACRYGHW---EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPS 56
           A    H    +V + LL    NV   +     T LH AA   H   + ++    A     
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAK---- 272

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                                           +N     G TALH AAL G+    +LLL
Sbjct: 273 --------------------------------MNALDSLGQTALHRAALAGHLQTCRLLL 300

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
              ++ S ++            G T           +  Q +LS   
Sbjct: 301 SYGSDPSIISLQ----------GFTAAQMGN-----EAVQQILSEST 332

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 32/175 (18%), Positives = 52/175 (29%), Gaps = 45/175 (25%)

Query: 5   RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 64
            +G  +    L               +  L  AA +G+       +   +          
Sbjct: 2   EFG--KSALDLADPSAKAVLTGE-YKKDELLEAARSGN----EEKLMALL---------- 44

Query: 65  QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 124
                           +        + +     T LH+AA       VQLLL   A+V A
Sbjct: 45  -----------TPLNVN-------CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86

Query: 125 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
                         G  PLH A   G+ +  ++LL  GA   +++   + PL  A
Sbjct: 87  KDKG----------GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA 131

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.4 bits (176), Expect = 7e-14
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 57/152 (37%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A    H +V++ L      +   D   G+TALH AA+ GH++  RL++   +D       
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDS-LGQTALHRAALAGHLQTCRLLLSYGSD------- 305

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +  +  G TA  M       + VQ +L   
Sbjct: 306 -----------------------------PSIISLQGFTAAQMGN-----EAVQQILSES 331

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 151
             +                    L  A+  G+
Sbjct: 332 TPMRTSD------------VDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 38
            +A   GH +  + LL +  + +      G TA     
Sbjct: 285 HRAALAGHLQTCRLLLSYGSDPSIISL-QGFTAAQMGN 321

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  113 bits (286), Expect = 2e-28
 Identities = 18/178 (10%), Positives = 46/178 (25%), Gaps = 31/178 (17%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A      +V    +    +V   D       L+ +     V   + ++            
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVRAAMVLLTKELL------------ 264

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                  + D   +++    +  +  V       +  +  AA     + +QLL +    V
Sbjct: 265 ------QKTDVFLIQACPYHNGTT--VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
                           G+               ++ L+  A   + + +      V++
Sbjct: 317 VRSLNT----------GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  104 bits (262), Expect = 4e-25
 Identities = 23/190 (12%), Positives = 49/190 (25%), Gaps = 40/190 (21%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRAD----YLSGRTALHFAAVNGHVRCIRLVVADFVPSVP 58
           A  + + E +  ++    + +          G + LH+A +                   
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE--------------- 224

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
            +V    +E             D       VN   +     L+++         + LL  
Sbjct: 225 -DVAMRFVE----------MGID-------VNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266

Query: 119 HA--NVSAVTFHYG-TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 175
                + A  +H G T +         +  AA     +  Q+L  +    +     G   
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGG 326

Query: 176 LDVARMWGRH 185
               +     
Sbjct: 327 AVKRKKKAAP 336

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  103 bits (260), Expect = 7e-25
 Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 44/187 (23%)

Query: 1   MQACRYG--HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP 58
                 G  + E+++ L+    + T  D  +  T L  A    +                
Sbjct: 143 HWCVGLGPEYLEMIKILVQLGASPTAKDK-ADETPLMRAMEFRNR--------------- 186

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
            E ++  ++         KS          ++ A   G + LH A L  + D     +++
Sbjct: 187 -EALDLMMDTV-----PSKSSLR-------LDYANKQGNSHLHWAILINWEDVAMRFVEM 233

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC---NGWLP 175
             +V+                + PL+ +     +   + LL +    +   C   NG   
Sbjct: 234 GIDVNMEDNE----------HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

Query: 176 LDVARMW 182
           L    +W
Sbjct: 284 LPDRVVW 290

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  101 bits (255), Expect = 3e-24
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 49/190 (25%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A R G  + V+ L+    + T  +   G TALH A   G V   + +             
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQNR-FGCTALHLACKFGCVDTAKYL------------- 72

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                                  S     +   G   +H+A +    D V  L++     
Sbjct: 73  ----------------------ASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKER 110

Query: 123 SAVTFHYGT---SMDLIGA--------GSTPLHFAACGGN--LKCCQVLLSRGASRMSLN 169
             +           ++           G T LH+    G   L+  ++L+  GAS  + +
Sbjct: 111 GQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKD 170

Query: 170 CNGWLPLDVA 179
                PL  A
Sbjct: 171 KADETPLMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 24/204 (11%), Positives = 43/204 (21%), Gaps = 66/204 (32%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A      ++V   L+        +   G+                            E
Sbjct: 89  HLAVMANKTDLVV-ALVEGA----KER--GQMPESLLNECDER----------------E 125

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALS-------------KF-------VNKAADGGITAL 100
           V              VK    Q+AL              K                 T L
Sbjct: 126 VNEIGSH--------VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPL 177

Query: 101 HMAALNGYFDCVQLLLDLH-----ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
             A      + + L++D         +                G++ LH+A         
Sbjct: 178 MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ----------GNSHLHWAILINWEDVA 227

Query: 156 QVLLSRGASRMSLNCNGWLPLDVA 179
              +  G      +    +PL ++
Sbjct: 228 MRFVEMGIDVNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 90.7 bits (226), Expect = 3e-20
 Identities = 25/167 (14%), Positives = 40/167 (23%), Gaps = 52/167 (31%)

Query: 19  RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 78
           + N  ++D       +H AA  G    +R ++                  + G       
Sbjct: 10  KLNRIKSDD-ENMEKIHVAARKGQTDEVRRLI------------------ETG------- 43

Query: 79  KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 138
                            G TALH+A   G  D  + L  +    S               
Sbjct: 44  -VS-------PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH------------ 83

Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           G  P+H A           L+            G +P  +       
Sbjct: 84  GQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDER 124

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 18/103 (17%)

Query: 82  QSALSKF----VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG 137
             +++ F      K+ D  +  +H+AA  G  D V+ L++   + +              
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF--------- 52

Query: 138 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDVA 179
            G T LH A   G +   + L S G      +  +G  P+ +A
Sbjct: 53  -GCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLA 91

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFA 37
           ++  +     V +  L     V      S   +   +
Sbjct: 328 VKRKKKAAPAVKRMKLAPSAPVRTRSR-SRARSSAVS 363

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  112 bits (282), Expect = 2e-28
 Identities = 34/180 (18%), Positives = 59/180 (32%), Gaps = 52/180 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           AC  G W+ V  LL    +V         + +H AA  GHV C+  ++    +       
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGN------- 182

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        ++       T L++A  N    CV+ LL+  
Sbjct: 183 -----------------------------IDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           A+V+                 +PLH      + +   +L+  GA   + N  G  P+++ 
Sbjct: 214 ADVNQGKG-----------QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (279), Expect = 5e-28
 Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 51/180 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A  +GH   ++ L+     V         + LH A + GH+ C+++++   A        
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKHGAQ------- 117

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN       T L  A ++G +DCV LLL   
Sbjct: 118 -----------------------------VNGVTADWHTPLFNACVSGSWDCVNLLLQHG 148

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           A+V   +             ++P+H AA  G+++C   L++ G +      +   PL +A
Sbjct: 149 ASVQPESD-----------LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (275), Expect = 2e-27
 Identities = 39/184 (21%), Positives = 55/184 (29%), Gaps = 56/184 (30%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
            +AC  GH   V+ LL     V         T L  A V+G   C+ L++   A      
Sbjct: 97  HEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGAS----- 150

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          V   +D   + +H AA  G+ +CV  L+ 
Sbjct: 151 -------------------------------VQPESDLA-SPIHEAARRGHVECVNSLIA 178

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN--CNGWLP 175
              N+     H            TPL+ A       C + LL  GA    +N       P
Sbjct: 179 YGGNIDHKISH----------LGTPLYLACENQQRACVKKLLESGA---DVNQGKGQDSP 225

Query: 176 LDVA 179
           L   
Sbjct: 226 LHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (256), Expect = 7e-25
 Identities = 38/210 (18%), Positives = 60/210 (28%), Gaps = 80/210 (38%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYL------------------------------SGRT 32
              + H      L+    ++   D                                S  +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 33  ALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
            +H AA++GH   +R ++                                         V
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWA------------------------------------V 85

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           N      ++ LH A L G+  CV++LL   A V+ VT              TPL  A   
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD----------WHTPLFNACVS 135

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           G+  C  +LL  GAS +    +   P+  A
Sbjct: 136 GSWDCVNLLLQHGAS-VQPESDLASPIHEA 164

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 98.3 bits (246), Expect = 2e-23
 Identities = 31/165 (18%), Positives = 46/165 (27%), Gaps = 52/165 (31%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R GH E V +L+ +  N+         T L+ A  N    C++ ++   AD       
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACVKKLLESGAD------- 215

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN+      + LH        +   LL+D  
Sbjct: 216 -----------------------------VNQGKGQD-SPLHAVVRTASEELACLLMDFG 245

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
           A+  A              G  P+        L     L   GAS
Sbjct: 246 ADTQAKNAE----------GKRPVELVPPESPLAQL-FLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.9 bits (154), Expect = 3e-11
 Identities = 16/126 (12%), Positives = 27/126 (21%), Gaps = 44/126 (34%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             AC       V+ LL    +V +       + LH            L++   AD     
Sbjct: 195 YLACENQQRACVKKLLESGADVNQGKG--QDSPLHAVVRTASEELACLLMDFGAD----- 247

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                                 G   + +          QL L+
Sbjct: 248 -------------------------------TQAKNAEGKRPVELVPPES--PLAQLFLE 274

Query: 118 LH-ANV 122
              A++
Sbjct: 275 REGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.5 bits (127), Expect = 7e-08
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 102 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 161
           M + + +      L+   ++++++       MD    GS P       G       LLS 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD-GKQGGMD----GSKPAGPRDFPGIR-----LLSN 50

Query: 162 GASRMSLNCNGWLPLDVA 179
               M    + W P+  A
Sbjct: 51  PL--MGDAVSDWSPMHEA 66

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  109 bits (274), Expect = 2e-28
 Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 47/184 (25%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           +   + GH            +V         T    AA     + +  +           
Sbjct: 19  LIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQL----------- 63

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                +E             D       V+   + G TAL   A  G   CV+LL +  A
Sbjct: 64  -----LED-----------RD-------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           ++                G T LH AA     +  + L+  GA     +  G   L++AR
Sbjct: 101 DLDHRDMRG---------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151

Query: 181 MWGR 184
              +
Sbjct: 152 EILK 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  104 bits (262), Expect = 1e-26
 Identities = 37/167 (22%), Positives = 55/167 (32%), Gaps = 52/167 (31%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A R    + +   LL   +V   D  +GRTAL F A  G  +C+RL+    AD     
Sbjct: 49  WTAARKADEQALS-QLLEDRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGAD----- 101

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLL 116
                                          ++ +   GG+TALHMAA     + V+ L+
Sbjct: 102 -------------------------------LDHRDMRGGLTALHMAAGYVRPEVVEALV 130

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           +L A++                G T L  A            +  G 
Sbjct: 131 ELGADIEVEDER----------GLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 79.1 bits (196), Expect = 2e-17
 Identities = 27/159 (16%), Positives = 42/159 (26%), Gaps = 54/159 (33%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G         +GH                                         +     
Sbjct: 14  GAMEYLIEWKDGHSPSWVP-----------------------------------SSYIAA 38

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           +  ++   T    AA       +  LL+   +V AV  +          G T L F A  
Sbjct: 39  DVVSEYE-TPWWTAARKADEQALSQLLE-DRDVDAVDEN----------GRTALLFVAGL 86

Query: 150 GNLKCCQVLLSRGASRMSLNC----NGWLPLDVARMWGR 184
           G+ KC ++L   GA    L+      G   L +A  + R
Sbjct: 87  GSDKCVRLLAEAGA---DLDHRDMRGGLTALHMAAGYVR 122

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.5 bits (192), Expect = 6e-17
 Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 39/125 (31%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           +     G  + V+ L     ++   D   G TALH AA       +  +V   AD     
Sbjct: 81  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD----- 135

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          +    + G+TAL +A            + 
Sbjct: 136 -------------------------------IEVEDERGLTALELAREILKTTPKGNPMQ 164

Query: 118 LHANV 122
               +
Sbjct: 165 FGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 15/96 (15%)

Query: 85  LSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 143
           ++K +     G G     +   +G+         + A+V +                TP 
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-------------EYETPW 48

Query: 144 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
             AA   + +    LL       +++ NG   L   
Sbjct: 49  WTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV 83

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  111 bits (280), Expect = 3e-28
 Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 40/201 (19%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A   G    V+ L      V  A+   G TALH A       C  +++          
Sbjct: 50  HLAAILGEASTVEKLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPS----- 103

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKF-------------------VNKAADGGIT 98
                    +               +  +                     +      G T
Sbjct: 104 ---HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

Query: 99  ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 158
            LH+A ++   + V+LL D  A+++               G TPLH A         ++L
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTC---------GRTPLHLAVEAQAASVLELL 211

Query: 159 LSRGASRMSLNCNGWLPLDVA 179
           L  GA   +    G  PL  A
Sbjct: 212 LKAGADPTARMYGGRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  107 bits (270), Expect = 1e-26
 Identities = 33/183 (18%), Positives = 54/183 (29%), Gaps = 51/183 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           + +      E       +R  +   +Y  G T LH A ++     +RL+    AD     
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGAD----- 183

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLL 116
                                          +N      G T LH+A        ++LLL
Sbjct: 184 -------------------------------LNKPEPTCGRTPLHLAVEAQAASVLELLL 212

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
              A+ +A  +           G TPL  A    N    ++L + GA       +   P 
Sbjct: 213 KAGADPTARMYG----------GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262

Query: 177 DVA 179
             +
Sbjct: 263 SSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 98.4 bits (246), Expect = 2e-23
 Identities = 34/161 (21%), Positives = 48/161 (29%), Gaps = 42/161 (26%)

Query: 29  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
            G TALH A ++ H   +  ++                                SA  ++
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLL------------------------------GFSAGHEY 37

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           ++   D G TALH+AA+ G    V+ L    A V                G T LH A  
Sbjct: 38  LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG----------GHTALHLACR 87

Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPL--DVARMWGRHWL 187
                C  VLL    S      + +L    D          
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 23/153 (15%), Positives = 37/153 (24%), Gaps = 49/153 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A  +   E+V+ L     ++ + +   GRT LH A        + L++   AD       
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD------- 217

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                              GG T L  A L       +LL    
Sbjct: 218 -----------------------------PTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
           A                    +P   +    + 
Sbjct: 249 APEPEDGGD----------KLSPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.5 bits (228), Expect = 5e-21
 Identities = 34/186 (18%), Positives = 48/186 (25%), Gaps = 45/186 (24%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRAD--YLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           A  + H   +  LL F       D     G+TALH AA+ G    +  +    A      
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG----- 70

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          V  A  GG TALH+A       C  +LL 
Sbjct: 71  -------------------------------VLVAERGGHTALHLACRVRAHTCACVLLQ 99

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTP----LHFAACGGNLKCCQVLLSRGASRMSLNCNGW 173
              +          +        T        +      +             + N +G 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159

Query: 174 LPLDVA 179
            PL VA
Sbjct: 160 TPLHVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.5 bits (158), Expect = 9e-12
 Identities = 15/118 (12%), Positives = 27/118 (22%), Gaps = 40/118 (33%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A       V++ LL    + T   Y  GRT L  A +  +    RL+    A        
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMY-GGRTPLGSALLRPNPILARLLRAHGAP------- 250

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          +     ++    +  +   D      +
Sbjct: 251 -----------------------------EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  108 bits (273), Expect = 1e-27
 Identities = 46/195 (23%), Positives = 70/195 (35%), Gaps = 51/195 (26%)

Query: 1   MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPS 56
             A + GH+EVVQ LL   + +V   D   G T + +A    HV  ++L++   +D    
Sbjct: 82  HLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDLVKLLLSKGSD---- 136

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                                           +N   +     LH AA +G  D  ++LL
Sbjct: 137 --------------------------------INIRDNEENICLHWAAFSGCVDIAEILL 164

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
               ++ AV  H          G +PLH AA      C  + LSR +     N  G  PL
Sbjct: 165 AAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

Query: 177 DVARMWGRHWLEPLL 191
             A +  + W    +
Sbjct: 215 QCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  104 bits (263), Expect = 3e-26
 Identities = 36/181 (19%), Positives = 62/181 (34%), Gaps = 51/181 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A   GH ++   L+    N+        RT L  AA N H+  ++ ++   A        
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLIKAGAL------- 69

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        V+     G T LH+AA  G+++ VQ LL   
Sbjct: 70  -----------------------------VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100

Query: 120 A-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
             +V+               G TP+ +A    ++   ++LLS+G+     +    + L  
Sbjct: 101 QMDVNCQDDG----------GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHW 150

Query: 179 A 179
           A
Sbjct: 151 A 151

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  104 bits (261), Expect = 8e-26
 Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 43/185 (23%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           M+A    H E V+ L+     V   D   G T LH AA  GH   ++ ++          
Sbjct: 49  MEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLL---------- 97

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                                 S     VN   DGG T +  A    + D V+LLL   +
Sbjct: 98  ----------------------SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           +++                +  LH+AA  G +   ++LL+      ++N +G  PL +A 
Sbjct: 136 DINIRDNE----------ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185

Query: 181 MWGRH 185
              R+
Sbjct: 186 RENRY 190

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.3 bits (241), Expect = 4e-23
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 50/164 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A  Y H ++V+ LL    ++   D       LH+AA +G V    +++    D       
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAAKCD------- 169

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        ++     G + LH+AA    +DCV L L   
Sbjct: 170 -----------------------------LHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           ++V+               G TPL  A+    +     +     
Sbjct: 201 SDVTLKNKE----------GETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.5 bits (218), Expect = 5e-20
 Identities = 39/165 (23%), Positives = 56/165 (33%), Gaps = 55/165 (33%)

Query: 21  NVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVK 77
           N       + R+ LH AA  GHV    ++V   A+                         
Sbjct: 3   NFKMEHQ-NKRSPLHAAAEAGHVDICHMLVQAGAN------------------------- 36

Query: 78  SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG 137
                      ++  ++   T L  AA N + + V+ L+   A V               
Sbjct: 37  -----------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE--------- 76

Query: 138 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC---NGWLPLDVA 179
            GST LH AA  G+ +  Q LLS G     +NC    GW P+  A
Sbjct: 77  -GSTCLHLAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.0 bits (170), Expect = 1e-13
 Identities = 20/122 (16%), Positives = 34/122 (27%), Gaps = 40/122 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A   G  ++ + LL  +C++   +   G + LH AA      C+ L +   +D       
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNI-HGDSPLHIAARENRYDCVVLFLSRDSD------- 202

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        V      G T L  A+LN        +    
Sbjct: 203 -----------------------------VTLKNKEGETPLQCASLNSQVWSALQMSKAL 233

Query: 120 AN 121
            +
Sbjct: 234 QD 235

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  105 bits (266), Expect = 2e-27
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 50/187 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           ++A R G  + V+ L+    +V   D  SG T LH AA NGH+  + +++   AD     
Sbjct: 19  LEAARAGRDDEVRILMANGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLLKNGAD----- 72

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN     G+T L +AAL G+ + V++LL 
Sbjct: 73  -------------------------------VNAVDHAGMTPLRLAALFGHLEIVEVLLK 101

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             A+V+A              G TPLH AA  G+L+  +VLL  GA   + +  G    D
Sbjct: 102 NGADVNANDME----------GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151

Query: 178 VARMWGR 184
           ++   G 
Sbjct: 152 ISIDNGN 158

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.3 bits (228), Expect = 5e-22
 Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 50/161 (31%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A   GH E+V+ LL    +V   D+ +G T L  AA+ GH+  + +++   AD       
Sbjct: 54  AAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKNGAD------- 105

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN     G T LH+AA+ G+ + V++LL   
Sbjct: 106 -----------------------------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
           A+V+A              G T    +   GN    ++L  
Sbjct: 137 ADVNAQDKF----------GKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.2 bits (207), Expect = 4e-19
 Identities = 43/159 (27%), Positives = 61/159 (38%), Gaps = 49/159 (30%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
               L  AA  G    +R+++   AD                                  
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGAD---------------------------------- 39

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
             VN     G T LH+AA NG+ + V++LL   A+V+AV             G TPL  A
Sbjct: 40  --VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA----------GMTPLRLA 87

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           A  G+L+  +VLL  GA   + +  G  PL +A M+G  
Sbjct: 88  ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           +  +D G   L  AA  G  D V++L+   A+V+A              G TPLH AA  
Sbjct: 9   HHGSDLG-KKLLEAARAGRDDEVRILMANGADVNAEDAS----------GWTPLHLAAFN 57

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           G+L+  +VLL  GA   +++  G  PL +A
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTPLRLA 87

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  107 bits (271), Expect = 3e-27
 Identities = 44/189 (23%), Positives = 64/189 (33%), Gaps = 55/189 (29%)

Query: 3   ACRYGHWEVVQTLL----LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVP 55
           AC +     ++ LL        ++   +Y  G TALH A        ++L++   AD   
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQETVQLLLERGAD--- 141

Query: 56  SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQL 114
                                            ++      G + L  A  N     VQL
Sbjct: 142 ---------------------------------IDAVDIKSGRSPLIHAVENNSLSMVQL 168

Query: 115 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 174
           LL   ANV+A  +           GS+ LH A+  G L   + L+  GA     NC+   
Sbjct: 169 LLQHGANVNAQMYS----------GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT 218

Query: 175 PLDVARMWG 183
           PL VAR   
Sbjct: 219 PLMVARSRR 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  107 bits (269), Expect = 6e-27
 Identities = 41/178 (23%), Positives = 63/178 (35%), Gaps = 41/178 (23%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A       VV+ L+    +    D   G+TA H A  +    C+R ++            
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALL------------ 99

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKF-VNKAADGGITALHMAALNGYFDCVQLLLDLHAN 121
                             D +A     +      G+TALH+A      + VQLLL+  A+
Sbjct: 100 ------------------DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 141

Query: 122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           + AV             G +PL  A    +L   Q+LL  GA+  +   +G   L  A
Sbjct: 142 IDAVDIKS---------GRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  102 bits (258), Expect = 2e-25
 Identities = 35/165 (21%), Positives = 52/165 (31%), Gaps = 49/165 (29%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A      E VQ LL    ++   D  SGR+ L  A  N  +  ++L++   A+       
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN------- 175

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN     G +ALH A+  G    V+ L+   
Sbjct: 176 -----------------------------VNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
           A+ S    H            TPL  A     +   +   +R AS
Sbjct: 207 ADSSLKNCH----------NDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 94.8 bits (237), Expect = 1e-22
 Identities = 37/192 (19%), Positives = 57/192 (29%), Gaps = 65/192 (33%)

Query: 3   ACRYGHWEVVQTLLLFRC----NVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVP 55
           A   G+   V  L+         +   +    +T LH A +      +RL+V   A    
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGAS--- 71

Query: 56  SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 115
                                                   G TA H+A  +    C++ L
Sbjct: 72  ---------------------------------PMALDRHGQTAAHLACEHRSPTCLRAL 98

Query: 116 LD----LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN-- 169
           LD       ++ A  +           G T LH A      +  Q+LL RGA    ++  
Sbjct: 99  LDSAAPGTLDLEARNYD----------GLTALHVAVNTECQETVQLLLERGA---DIDAV 145

Query: 170 --CNGWLPLDVA 179
              +G  PL  A
Sbjct: 146 DIKSGRSPLIHA 157

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.4 bits (228), Expect = 3e-21
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 43/154 (27%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G T LH A V G++  +  +                +   +  G               +
Sbjct: 9   GDTPLHIAVVQGNLPAVHRL----------------VNLFQQGGRE-------------L 39

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           +   +   T LH+A +      V+LL+   A+  A+  H          G T  H A   
Sbjct: 40  DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH----------GQTAAHLACEH 89

Query: 150 GNLKCCQVLLSRGASRMSL----NCNGWLPLDVA 179
            +  C + LL   A         N +G   L VA
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.3 bits (189), Expect = 4e-16
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLH----ANVSAVTFHYGTSMDLIGAGSTPLH 144
             +A + G T LH+A + G    V  L++L       +                  TPLH
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL----------RQTPLH 51

Query: 145 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            A         ++L++ GAS M+L+ +G     +A
Sbjct: 52  LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA 86

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  107 bits (269), Expect = 4e-27
 Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 39/184 (21%)

Query: 3   ACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
           A +    + +  LL F  C V +     G TALH AA+  ++    +++    + V    
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                                G TALH+A +N   + V+ LL  
Sbjct: 69  -------------------------------TSELYEGQTALHIAVINQNVNLVRALLAR 97

Query: 119 HANVSA---VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 175
            A+VSA    +  +    +LI  G  PL FAAC G+ +  ++L+  GA   + +  G   
Sbjct: 98  GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157

Query: 176 LDVA 179
           L + 
Sbjct: 158 LHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 99.6 bits (249), Expect = 3e-24
 Identities = 41/191 (21%), Positives = 65/191 (34%), Gaps = 44/191 (23%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLS----GRTALHFAAVNGHVRCIRLVVADFVPSVP 58
           A  Y + E    L+     +      S    G+TALH A +N +V  +R ++A       
Sbjct: 44  AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR------ 97

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                         G+SV ++   S      +     G   L  AA  G  + V+LL++ 
Sbjct: 98  --------------GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LKCCQVLLSRGA------SRMSL 168
            A++ A              G+T LH      N     +   +LLS           +  
Sbjct: 144 GADIRAQDSL----------GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVP 193

Query: 169 NCNGWLPLDVA 179
           N  G  P  +A
Sbjct: 194 NNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 31/180 (17%), Positives = 45/180 (25%), Gaps = 59/180 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNV------------TRADYLSGRTALHFAAVNGHVRCIRLVV 50
           A    +  +V+ LL    +V                   G   L FAA  G    +RL++
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 51  ---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 107
              AD                                    +      G T LH+  L  
Sbjct: 142 EHGAD------------------------------------IRAQDSLGNTVLHILILQP 165

Query: 108 YFDCV----QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
                     LLL         +     +      G TP   A   GN+   Q L+ +  
Sbjct: 166 NKTFACQMYNLLLSYDGGDHLKSLELVPNNQ----GLTPFKLAGVEGNIVMFQHLMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.0 bits (193), Expect = 9e-17
 Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 45/138 (32%)

Query: 30  GRTALHFAAVNGHVRCIRLVV----ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 85
             + L  AA    V+ +  ++     +                                 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCE--------------------------------- 29

Query: 86  SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
              V++    G TALH+AAL    +   +L++    +                G T LH 
Sbjct: 30  ---VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-----EGQTALHI 81

Query: 146 AACGGNLKCCQVLLSRGA 163
           A    N+   + LL+RGA
Sbjct: 82  AVINQNVNLVRALLARGA 99

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 96  GITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
             + L +AA       +  LL      V                G T LH AA   NL+ 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM----------GETALHIAALYDNLEA 52

Query: 155 CQVLLSRGA--SRMSLNC---NGWLPLDVA 179
             VL+          +      G   L +A
Sbjct: 53  AMVLMEAAPELVFEPMTSELYEGQTALHIA 82

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  108 bits (272), Expect = 5e-27
 Identities = 26/182 (14%), Positives = 48/182 (26%), Gaps = 52/182 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A    +  +V TLL         +       LH AA     + +++++    D     
Sbjct: 36  YYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDTKIVKILLFSGLD----- 87

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           ++  D G TAL+ A  +G    V+L + 
Sbjct: 88  -------------------------------DSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
            +  +       G          T  + A    ++      LS   S   L       + 
Sbjct: 117 KNWRLMFYG-KTG--------WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA-ILLSCIH 166

Query: 178 VA 179
           + 
Sbjct: 167 IT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  106 bits (266), Expect = 4e-26
 Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 52/180 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
            QA      ++V+ LL    + ++ D   G TAL++A  +G+++ ++L V          
Sbjct: 67  HQAATLEDTKIVKILLFSGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWR----- 120

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLL 116
                                          +      G  T+ + A +      V   L
Sbjct: 121 -------------------------------LMFYGKTGWKTSFYHAVMLNDVSIVSYFL 149

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
               +   +               + +H     G++    +LL    S  + N   ++P 
Sbjct: 150 SEIPSTFDLAI-----------LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 99.1 bits (248), Expect = 1e-23
 Identities = 18/164 (10%), Positives = 41/164 (25%), Gaps = 45/164 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G+ + V+  +     +        +T+ + A +   V  +   +          
Sbjct: 100 YYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL---------- 149

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                                               ++ +H+   NG+ D + LLLD   
Sbjct: 150 --------SEIP----------------STFDLAILLSCIHITIKNGHVDMMILLLDYMT 185

Query: 121 NVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGA 163
           + +                  P +  A    +++  Q L     
Sbjct: 186 STNTNNSL----------LFIPDIKLAIDNKDIEMLQALFKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 96.4 bits (241), Expect = 1e-22
 Identities = 28/182 (15%), Positives = 54/182 (29%), Gaps = 54/182 (29%)

Query: 2   QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
                   + ++   L   +  +AD   G +A ++A  + +VR +  ++   A       
Sbjct: 5   SRINTWKSKQLK-SFLSSKDTFKADV-HGHSASYYAIADNNVRLVCTLLNAGAL------ 56

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                          N   +     LH AA       V++LL  
Sbjct: 57  ------------------------------KN-LLE-NEFPLHQAATLEDTKIVKILLFS 84

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL-PLD 177
             + S               G+T L++A   GN++  ++ + +    M     GW     
Sbjct: 85  GLDDSQFDDK----------GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY 134

Query: 178 VA 179
            A
Sbjct: 135 HA 136

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 91.1 bits (227), Expect = 8e-21
 Identities = 18/175 (10%), Positives = 40/175 (22%), Gaps = 53/175 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A       +V   L    +          + +H    NGHV  + L++            
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFDLAI--LLSCIHITIKNGHVDMMILLL------------ 181

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDLHAN 121
                 D                    N          + +A  N   + +Q L     N
Sbjct: 182 ------DYM--------TS-------TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

Query: 122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
           +                  +         + +  ++++ +     S +    L +
Sbjct: 221 I-----------------YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 13/174 (7%), Positives = 41/174 (23%), Gaps = 64/174 (36%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRT-ALHFAAVNGHVRCIRLVV---ADFVPSVP 58
             + GH +++  LL +  +    +        +  A  N  +  ++ +     +      
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNN-SLLFIPDIKLAIDNKDIEMLQALFKYDIN------ 220

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                         +        +A     L    +  +++++ 
Sbjct: 221 ------------------------------IY-------SANLENVLLDDAEIAKMIIEK 243

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA-SRMSLNCN 171
           H    + +                +         K  +++        M +NC 
Sbjct: 244 HVEYKSDS----------YTKDLDIVKNN-----KLDEIISKNKELRLMYVNCV 282

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  102 bits (257), Expect = 2e-26
 Identities = 54/164 (32%), Positives = 74/164 (45%), Gaps = 50/164 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R GH EVV+ LL    +V   D  +GRT LH AA NGH+  ++L++   AD       
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAD------- 60

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN     G T LH+AA NG+ + V+LLL+  
Sbjct: 61  -----------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           A+V+A   +          G TPLH AA  G+L+  ++LL  GA
Sbjct: 92  ADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.5 bits (226), Expect = 3e-22
 Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 49/158 (31%)

Query: 29  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 85
           +GRT LH AA NGH+  ++L++   AD                                 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------- 27

Query: 86  SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
              VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH 
Sbjct: 28  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHL 74

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 183
           AA  G+L+  ++LL  GA   + + NG  PL +A   G
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.4 bits (122), Expect = 4e-08
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 48
             A R GH EVV+ LL    +V   D  +GRT LH AA NGH+  ++L
Sbjct: 73  HLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKL 119

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  105 bits (265), Expect = 2e-26
 Identities = 42/189 (22%), Positives = 58/189 (30%), Gaps = 51/189 (26%)

Query: 1   MQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPS 56
             A       V Q L+  R  ++    +  G T L  AA       +  ++   AD    
Sbjct: 95  HAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD---- 149

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                                           VN   D G +ALH AA     D   +LL
Sbjct: 150 --------------------------------VNAVDDLGKSALHWAAAVNNVDAAVVLL 177

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
              AN                   TPL  AA  G+ +  +VLL   A+R   +    LP 
Sbjct: 178 KNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPR 227

Query: 177 DVARMWGRH 185
           D+A+    H
Sbjct: 228 DIAQERMHH 236

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  100 bits (251), Expect = 2e-24
 Identities = 41/177 (23%), Positives = 59/177 (33%), Gaps = 43/177 (24%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A RY   +  + LL    +    D   GRT LH A                       V 
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSADAQ----------------GVF 106

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
              I     D                ++     G T L +AA       ++ L++ HA+V
Sbjct: 107 QILIRNRATD----------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV 150

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           +AV             G + LH+AA   N+    VLL  GA++   N     PL +A
Sbjct: 151 NAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 91.4 bits (228), Expect = 3e-21
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 50/164 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R     +++ L+    +V   D   G++ALH+AA   +V    +++   A+       
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN------- 182

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +   +   T L +AA  G ++  ++LLD  
Sbjct: 183 -----------------------------KDMQNNREETPLFLAAREGSYETAKVLLDHF 213

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           AN      H             P   A    +    ++L     
Sbjct: 214 ANRDITD-HMD---------RLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.8 bits (211), Expect = 7e-19
 Identities = 31/183 (16%), Positives = 51/183 (27%), Gaps = 50/183 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
                     V+   +    ++      +G TALH AA        + ++   AD     
Sbjct: 28  NSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD----- 82

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           N   + G T LH A         Q+L+ 
Sbjct: 83  -------------------------------ANIQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 118 LHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
             A ++ A              G+TPL  AA        + L++  A   +++  G   L
Sbjct: 112 NRATDLDARMHD----------GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161

Query: 177 DVA 179
             A
Sbjct: 162 HWA 164

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.4 bits (189), Expect = 6e-16
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 30/151 (19%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G T L  A+ +G          +        V++  I      G+S+ ++ D++      
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAP---AVISDFIYQ----GASLHNQTDRT------ 56

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
                 G TALH+AA     D  + LL+  A+ +               G TPLH A   
Sbjct: 57  ------GETALHLAARYSRSDAAKRLLEASADANIQDNM----------GRTPLHAAVSA 100

Query: 150 GNLKCCQVLLSRGASRM-SLNCNGWLPLDVA 179
                 Q+L+   A+ + +   +G  PL +A
Sbjct: 101 DAQGVFQILIRNRATDLDARMHDGTTPLILA 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.5 bits (166), Expect = 5e-13
 Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 22/104 (21%)

Query: 89  VNKAADGGITALHMAALNGYF-------------DCVQLLLDLHANVSAVTFHYGTSMDL 135
           VN     G T L +A+ +G                 +   +   A++   T         
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT------ 56

Query: 136 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
              G T LH AA        + LL   A     +  G  PL  A
Sbjct: 57  ---GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 40/122 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A    + +    LL    N    +     T L  AA  G     ++++   A+       
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFAN------- 215

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +           +A    + D V+LL   H
Sbjct: 216 -----------------------------RDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

Query: 120 AN 121
            +
Sbjct: 247 HH 248

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  104 bits (263), Expect = 3e-26
 Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 44/186 (23%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYL--SGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           +  +   E+   LL    NV   DY   SG T  H A   G++  ++ +           
Sbjct: 43  SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY---------- 92

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                   DR     +             NK  + G+T LH+A    +F+  Q L++  A
Sbjct: 93  --------DRPLKPDL-------------NKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPLDVA 179
           +V                   PLH AA  G+LK  ++L   G S ++  +  GW PL  A
Sbjct: 132 SVRIKDKF----------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 180 RMWGRH 185
              G  
Sbjct: 182 LAEGHG 187

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 97.9 bits (245), Expect = 1e-23
 Identities = 37/182 (20%), Positives = 59/182 (32%), Gaps = 44/182 (24%)

Query: 1   MQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 59
            QAC    +  VQ LL  +   + + D   GR  LH++                      
Sbjct: 7   HQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAH---------------- 49

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
           E+ +  +        +V             +   D G T  H+A   G  + V+ L D  
Sbjct: 50  EITSFLLS----KMENVNLD----------DYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95

Query: 120 --ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
              +++ +T            G T LH A      +  Q L+  GAS    +    +PL 
Sbjct: 96  LKPDLNKITNQ----------GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145

Query: 178 VA 179
            A
Sbjct: 146 RA 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 96.0 bits (240), Expect = 4e-23
 Identities = 36/184 (19%), Positives = 56/184 (30%), Gaps = 54/184 (29%)

Query: 3   ACRYGHWEVVQTLL--LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           AC  G+ EVV++L     + ++ +     G T LH A         + ++   A      
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVSQFLIENGAS----- 132

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          V          LH AA  G    ++LL  
Sbjct: 133 -------------------------------VRIKDKFNQIPLHRAASVGSLKLIELLCG 161

Query: 118 LHAN-VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLP 175
           L  + V+               G TPL  A   G+     +L+ + GA    ++  G   
Sbjct: 162 LGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA 211

Query: 176 LDVA 179
            DVA
Sbjct: 212 EDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 82.5 bits (205), Expect = 2e-18
 Identities = 29/159 (18%), Positives = 45/159 (28%), Gaps = 47/159 (29%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A     +EV Q L+    +V   D    +  LH AA  G +                +++
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKDK-FNQIPLHRAASVGSL----------------KLI 156

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-AN 121
                           K         VN     G T L  A   G+ D   LL++ + A 
Sbjct: 157 ELLCG---------LGKSA-------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE 200

Query: 122 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
              V             G+     A    N +  +  L+
Sbjct: 201 YDLVDNK----------GAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.0 bits (201), Expect = 8e-18
 Identities = 24/152 (15%), Positives = 38/152 (25%), Gaps = 41/152 (26%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
               LH A +          V + +                                  +
Sbjct: 2   SNYPLHQACMENEFF----KVQELL---------------------HSKPSL-------L 29

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
            +    G   LH +      +    LL    NV+   +   +       G TP H A   
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-------GWTPFHIACSV 82

Query: 150 GNLKCCQVLLSR--GASRMSLNCNGWLPLDVA 179
           GNL+  + L  R        +   G   L +A
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 45/122 (36%)

Query: 1   MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVV----ADFVP 55
            +A   G  ++++ L    +  V   D   G T L  A   GH     L+V    A+   
Sbjct: 145 HRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGHGDAAVLLVEKYGAE--- 200

Query: 56  SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 115
                                             +   + G  A  +A         +  
Sbjct: 201 ---------------------------------YDLVDNKGAKAEDVALNE---QVKKFF 224

Query: 116 LD 117
           L+
Sbjct: 225 LN 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  104 bits (262), Expect = 5e-26
 Identities = 32/182 (17%), Positives = 54/182 (29%), Gaps = 47/182 (25%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           + +   G +++VQ ++    + +  +   G TALH A   GH   ++ +V    +     
Sbjct: 42  LDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVN----- 95

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN A   G T LH AA        + L++
Sbjct: 96  -------------------------------VNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             A V A+T+            +         G  +C Q L         +N      L 
Sbjct: 125 SGAAVFAMTYSDMQ-------TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177

Query: 178 VA 179
             
Sbjct: 178 DY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  102 bits (257), Expect = 2e-25
 Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 54/185 (29%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
               R    +     +     V           L  +++ G    ++ ++    D     
Sbjct: 10  PPGKRTNLRKTGSERIAHGMRVKFNPL--PLALLLDSSLEGEFDLVQRIIYEVDD----- 62

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                           +   D GITALH A   G+ + V+ L+ 
Sbjct: 63  -------------------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQ 91

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG---WL 174
              NV+A              G TPLH AA   N++ C+ L+  GA+  ++  +      
Sbjct: 92  FGVNVNAADSD----------GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141

Query: 175 PLDVA 179
                
Sbjct: 142 DKCEE 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 44/151 (29%)

Query: 29  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 88
           +G+ +L                         +  + +I      G  VK           
Sbjct: 4   TGQVSLPPGKRTNLR----------------KTGSERIAH----GMRVKFN--------- 34

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
                   +  L  ++L G FD VQ ++    + S               G T LH A C
Sbjct: 35  -----PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE----------GITALHNAVC 79

Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            G+ +  + L+  G +  + + +GW PL  A
Sbjct: 80  AGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 32/200 (16%), Positives = 57/200 (28%), Gaps = 60/200 (30%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   GH E+V+ L+ F  NV  AD   G T LH AA   +V                +
Sbjct: 75  HNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNV----------------Q 117

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
           V    +E     G++V +             +              GY  C Q L  +  
Sbjct: 118 VCKFLVES----GAAVFAM----------TYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL------------ 168
            +  +                 L       +    ++ +  G     +            
Sbjct: 164 KMGIMN----------KGVIYALWDYEPQNDD---ELPMKEGDCMTIIHREDEDEIEWWW 210

Query: 169 ----NCNGWLPLDVARMWGR 184
               +  G++P ++  ++ R
Sbjct: 211 ARLNDKEGYVPRNLLGLYPR 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 11/90 (12%), Positives = 17/90 (18%), Gaps = 11/90 (12%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G  +L               +     V                    L  ++  G     
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-----------PLALLLDSSLEGEFDLV 53

Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           Q ++         N  G   L  A   G  
Sbjct: 54  QRIIYEVDDPSLPNDEGITALHNAVCAGHT 83

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  101 bits (255), Expect = 5e-26
 Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 51/186 (27%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R G  + V+ L+      T      G + LH AA  GH     +++            
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWL--GTSPLHLAAQYGHFSTTEVLLRAGVS------- 59

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +       T LHMAA  G+ + V++LL   
Sbjct: 60  -----------------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHG 90

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           A+V+A                T LH+A    + +  ++L+  GA   + +       D++
Sbjct: 91  ADVNAKDML----------KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDIS 140

Query: 180 RMWGRH 185
              G  
Sbjct: 141 IDNGNE 146

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 81.7 bits (203), Expect = 8e-19
 Identities = 32/159 (20%), Positives = 51/159 (32%), Gaps = 50/159 (31%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A +YGH+   + LL    +         RT LH AA  GH   + +++   AD       
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGHANIVEVLLKHGAD------- 92

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN      +TALH A  + + + V+LL+   
Sbjct: 93  -----------------------------VNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 158
           A+V   +              T    +   GN    ++L
Sbjct: 124 ADVHTQSKF----------CKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 77.0 bits (191), Expect = 5e-17
 Identities = 31/158 (19%), Positives = 45/158 (28%), Gaps = 50/158 (31%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
               L  AA  G    +R+++   A                                   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAP---------------------------------- 27

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
                    G + LH+AA  G+F   ++LL    +  A T              TPLH A
Sbjct: 28  --FTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV----------DRTPLHMA 74

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
           A  G+    +VLL  GA   + +      L  A     
Sbjct: 75  ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.5 bits (174), Expect = 8e-15
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 94  DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
           D G   L  AA  G  D V++L+   A  +               G++PLH AA  G+  
Sbjct: 1   DLG-KKLLEAARAGQDDEVRILMANGAPFTTDWL-----------GTSPLHLAAQYGHFS 48

Query: 154 CCQVLLSRGASRMSLNCNGWLPLDVA 179
             +VLL  G SR +       PL +A
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPLHMA 74

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  102 bits (256), Expect = 5e-26
 Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 52/186 (27%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A   G  E + +LL    NV   +   GRTAL      G+    R ++   A+       
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMK-LGNPEIARRLLLRGAN------- 62

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +     G   +H AA  G+ D +Q LL+  
Sbjct: 63  -----------------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ 93

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM-SLNCNGWLPLDV 178
           A+V+               G+ PLH AA  G+L+  + L+   AS +   N  G    D+
Sbjct: 94  ADVNIEDNE----------GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

Query: 179 ARMWGR 184
           AR++GR
Sbjct: 144 ARLYGR 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.6 bits (221), Expect = 4e-21
 Identities = 33/163 (20%), Positives = 53/163 (32%), Gaps = 51/163 (31%)

Query: 5   RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEV 61
           + G+ E+ + LLL   N    D  +G   +H AA  G +  ++ ++   AD         
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGFLDTLQTLLEFQAD--------- 95

Query: 62  MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA- 120
                                      VN   + G   LH+AA  G+   V+ L+   A 
Sbjct: 96  ---------------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           NV                G T    A   G  +   ++ + GA
Sbjct: 129 NVGHRNHK----------GDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 78.2 bits (194), Expect = 2e-17
 Identities = 31/159 (19%), Positives = 42/159 (26%), Gaps = 50/159 (31%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
               L  AA  G +  +  ++    +                                  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVN---------------------------------- 30

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
             VN     G TAL +    G  +  + LL   AN                 G   +H A
Sbjct: 31  --VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT----------GFAVIHDA 77

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           A  G L   Q LL   A     +  G LPL +A   G  
Sbjct: 78  ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.9 bits (170), Expect = 3e-14
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 93  ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
           A+     L  AA  G  + +  LL  + NV+A              G T L      GN 
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF----------GRTALQVMKL-GNP 50

Query: 153 KCCQVLLSRGASRMSLNCNGWLPLDVA 179
           +  + LL RGA+    +  G+  +  A
Sbjct: 51  EIARRLLLRGANPDLKDRTGFAVIHDA 77

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.4 bits (166), Expect = 1e-13
 Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 33/115 (28%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A R G  + +QTLL F+ +V   D   G   LH AA  GH+R +  +V            
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGHLRVVEFLV------------ 123

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                               +A +  V      G TA  +A L G  + V L+  
Sbjct: 124 ------------------KHTASN--VGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.1 bits (103), Expect = 3e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 1   MQACRYGHWEVVQTLLLFR--CNVTRADYLSGRTALHFAAVNGH 42
             A + GH  VV+  L+     NV   ++  G TA   A + G 
Sbjct: 108 HLAAKEGHLRVVE-FLVKHTASNVGHRNH-KGDTACDLARLYGR 149

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  104 bits (262), Expect = 5e-26
 Identities = 37/187 (19%), Positives = 61/187 (32%), Gaps = 55/187 (29%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A R    + +   LL   +V   D  +GRTAL F A  G  +C+RL+    AD     
Sbjct: 50  WTAARKADEQALS-QLLEDRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGAD----- 102

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLL 116
                                          ++ +   GG+TALHMAA     + V+ L+
Sbjct: 103 -------------------------------LDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
           +L A++                G T L  A            +  G     +     + +
Sbjct: 132 ELGADIEVED----------ERGLTALELAREILKTTPKGNPMQFGR---RIGLEKVINV 178

Query: 177 DVARMWG 183
              +++ 
Sbjct: 179 LEGQVFE 185

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  104 bits (261), Expect = 8e-26
 Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 47/184 (25%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           +   + GH            +V         T    AA     + +  +           
Sbjct: 20  LIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQL----------- 64

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                +E             D       V+   + G TAL   A  G   CV+LL +  A
Sbjct: 65  -----LED-----------RD-------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           ++                G T LH AA     +  + L+  GA     +  G   L++AR
Sbjct: 102 DLDHRDMRG---------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152

Query: 181 MWGR 184
              +
Sbjct: 153 EILK 156

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =   99 bits (250), Expect = 2e-24
 Identities = 26/178 (14%), Positives = 43/178 (24%), Gaps = 51/178 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           +     G  + V+ L     ++   D   G TALH AA       +  +V   AD     
Sbjct: 82  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD----- 136

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          +    + G+TAL +A            + 
Sbjct: 137 -------------------------------IEVEDERGLTALELAREILKTTPKGNPMQ 165

Query: 118 LHANV---------SAVTFHYGTSMDLI---GAGSTPLHFAACGGNLKCCQVLLSRGA 163
               +             F Y    +++   G G    +         C  V     A
Sbjct: 166 FGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 20/155 (12%), Positives = 39/155 (25%), Gaps = 30/155 (19%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A  Y   EVV+ L+    ++   D   G TAL  A            +          
Sbjct: 116 HMAAGYVRPEVVEALVELGADIEVEDE-RGLTALELAREILKTTPKGNPMQFGRR----- 169

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                   I  ++          + + + + + +    G    ++       DC  +   
Sbjct: 170 --------IGLEKVINVLEGQVFEYAEVDE-IVEKRGKGKDVEYLVRWKDGGDCEWVKGV 220

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
             A   A  +               L +A     +
Sbjct: 221 HVAEDVAKDY------------EDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 14/90 (15%)

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           ++ A  G     +   +G+         + A+V +                TP   AA  
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-------------EYETPWWTAARK 55

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            + +    LL       +++ NG   L   
Sbjct: 56  ADEQALSQLLE-DRDVDAVDENGRTALLFV 84

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  103 bits (260), Expect = 6e-26
 Identities = 42/187 (22%), Positives = 58/187 (31%), Gaps = 51/187 (27%)

Query: 3   ACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
           A       V Q L+  R  ++    +  G T L  AA       +  ++   AD      
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGMLEDLINSHAD------ 117

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                         VN   D G +ALH AA     D   +LL  
Sbjct: 118 ------------------------------VNAVDDLGKSALHWAAAVNNVDAAVVLLKN 147

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
            AN                   TPL  AA  G+ +  +VLL   A+R   +    LP D+
Sbjct: 148 GANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197

Query: 179 ARMWGRH 185
           A+    H
Sbjct: 198 AQERMHH 204

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 97.5 bits (244), Expect = 1e-23
 Identities = 41/177 (23%), Positives = 59/177 (33%), Gaps = 43/177 (24%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
           A RY   +  + LL    +    D   GRT LH A                       V 
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSADAQ----------------GVF 74

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
              I     D                ++     G T L +AA       ++ L++ HA+V
Sbjct: 75  QILIRNRATD----------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           +AV             G + LH+AA   N+    VLL  GA++   N     PL +A
Sbjct: 119 NAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 91.7 bits (229), Expect = 1e-21
 Identities = 27/166 (16%), Positives = 50/166 (30%), Gaps = 50/166 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R     +++ L+    +V   D   G++ALH+AA   +V    +++   A+       
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNNVDAAVVLLKNGAN------- 150

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +   +   T L +AA  G ++  ++LLD  
Sbjct: 151 -----------------------------KDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 165
           AN                    P   A    +    ++L      R
Sbjct: 182 ANRDITDHM----------DRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.9 bits (214), Expect = 2e-19
 Identities = 31/177 (17%), Positives = 51/177 (28%), Gaps = 50/177 (28%)

Query: 7   GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMN 63
               V+   +    ++      +G TALH AA        + ++   AD           
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD----------- 50

Query: 64  TQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA-NV 122
                                     N   + G T LH A         Q+L+   A ++
Sbjct: 51  -------------------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 85

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
            A              G+TPL  AA        + L++  A   +++  G   L  A
Sbjct: 86  DARMHD----------GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 132

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.2 bits (155), Expect = 1e-11
 Identities = 16/125 (12%), Positives = 30/125 (24%), Gaps = 40/125 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A    + +    LL    N    +     T L  AA  G     ++++   A+       
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGSYETAKVLLDHFAN------- 183

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         +           +A    + D V+LL + +
Sbjct: 184 -----------------------------RDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214

Query: 120 ANVSA 124
              S 
Sbjct: 215 LVRSP 219

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  101 bits (255), Expect = 9e-26
 Identities = 43/182 (23%), Positives = 64/182 (35%), Gaps = 51/182 (28%)

Query: 3   ACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
           A + G  E V+ L   +  N    +     T LHFAA    V  +  ++   AD      
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGAD------ 67

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                         V+    GG+  LH A   G+++  +LL+  
Sbjct: 68  ------------------------------VHAKDKGGLVPLHNACSYGHYEVAELLVKH 97

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
            A V+                 TPLH AA  G  + C++LL  GA     N +G  PLD+
Sbjct: 98  GAVVNVADLW----------KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147

Query: 179 AR 180
            +
Sbjct: 148 VK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 88.2 bits (220), Expect = 6e-21
 Identities = 37/164 (22%), Positives = 48/164 (29%), Gaps = 51/164 (31%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A  Y    VV+ LL    +V   D   G   LH A   GH     L+V   A        
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAV------- 100

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN A     T LH AA  G ++  +LLL   
Sbjct: 101 -----------------------------VNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           A+ +               G+TPL      G+     +L    A
Sbjct: 132 ADPTKKNRD----------GNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 77.4 bits (192), Expect = 4e-17
 Identities = 30/155 (19%), Positives = 42/155 (27%), Gaps = 42/155 (27%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
               L  AA  G V                E +         +                 
Sbjct: 8   ADRQLLEAAKAGDV----------------ETVKKLCTVQSVN----------------C 35

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
                   T LH AA       V+ LL   A+V A              G  PLH A   
Sbjct: 36  RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----------GLVPLHNACSY 85

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
           G+ +  ++L+  GA     +   + PL  A   G+
Sbjct: 86  GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  101 bits (254), Expect = 9e-26
 Identities = 30/185 (16%), Positives = 47/185 (25%), Gaps = 57/185 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A   G  E V+ LL    N    +   GR  +      G  R   L++   A+       
Sbjct: 19  AAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAE------- 69

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDL 118
                                         N A    +T  +H AA  G+ D + +L   
Sbjct: 70  -----------------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRA 100

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
            A +                G  P+  A   G+    + L +           G     +
Sbjct: 101 GARLDVRD----------AWGRLPVDLAEELGHRDVARYLRAAAG-----GTRGSNHARI 145

Query: 179 ARMWG 183
               G
Sbjct: 146 DAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.4 bits (228), Expect = 4e-22
 Identities = 31/162 (19%), Positives = 44/162 (27%), Gaps = 49/162 (30%)

Query: 25  ADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 81
           +        L  AA  G V  +R ++   A+                             
Sbjct: 7   SSMEPSADWLATAAARGRVEEVRALLEAGAN----------------------------- 37

Query: 82  QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 141
                   N     G   + +    G     +LLL   A  +       T          
Sbjct: 38  -------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLT---------R 80

Query: 142 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 183
           P+H AA  G L    VL   GA     +  G LP+D+A   G
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 75.2 bits (186), Expect = 2e-16
 Identities = 21/150 (14%), Positives = 34/150 (22%), Gaps = 54/150 (36%)

Query: 6   YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVM 62
            G   V + LLL       AD  +    +H AA  G +  + ++    A           
Sbjct: 54  MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR---------- 103

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                                     ++     G   + +A   G+ D  + L       
Sbjct: 104 --------------------------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT 137

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
                           GS      A  G  
Sbjct: 138 R---------------GSNHARIDAAEGPS 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 85  LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 144
           +      + +     L  AA  G  + V+ LL+  AN +A   +          G  P+ 
Sbjct: 1   MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY----------GRRPIQ 50

Query: 145 FAACGGNLKCCQVLLSRGASRMSLNC---NGW-LPLDVA 179
                G+ +  ++LL  GA     NC        P+  A
Sbjct: 51  VMMM-GSARVAELLLLHGA---EPNCADPATLTRPVHDA 85

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 16/111 (14%), Positives = 21/111 (18%), Gaps = 41/111 (36%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A R G  + +  L      +   D   GR  +  A   GH    R             
Sbjct: 83  HDAAREGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEELGHRDVARY------------ 129

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFD 110
                                          A    G     + A  G  D
Sbjct: 130 ---------------------------LRAAAGGTRGSNHARIDAAEGPSD 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  100 bits (251), Expect = 2e-25
 Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 53/187 (28%)

Query: 3   ACRYGHWEVVQTLLL-FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
           A   G  + V+ LL     +    +   G+TAL      G       ++   A       
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQGAS------ 60

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                          N     G + +H AA  G+ D +++L++ 
Sbjct: 61  ------------------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
            A+V+             G G+ P+H A   G+      L +  +     +  G  PL++
Sbjct: 91  GADVNVPD----------GTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLEL 139

Query: 179 ARMWGRH 185
           A   G  
Sbjct: 140 ALQRGAQ 146

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 91.7 bits (229), Expect = 2e-22
 Identities = 28/158 (17%), Positives = 45/158 (28%), Gaps = 51/158 (32%)

Query: 6   YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVM 62
           +G   +   LL    +    D  SG + +H AA  G +  ++++V   AD          
Sbjct: 45  FGSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGFLDTLKVLVEHGAD---------- 93

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                                     VN     G   +H+A   G+   V  L    +++
Sbjct: 94  --------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDL 126

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
                           G TPL  A   G      +L  
Sbjct: 127 HRRDAR----------GLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 79.4 bits (197), Expect = 6e-18
 Identities = 29/154 (18%), Positives = 45/154 (29%), Gaps = 51/154 (33%)

Query: 30  GRTALHFAAVNGHVRCIRLVV----ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 85
               L  AA  G V+ +R ++                                       
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVH--------------------------------- 28

Query: 86  SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
               +     G TAL +    G       LL   A+ +               G++P+H 
Sbjct: 29  ---PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS----------GTSPVHD 74

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           AA  G L   +VL+  GA     +  G LP+ +A
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 39/119 (32%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV--ADFVPSVP 58
             A R G  + ++ L+    +V   D  +G   +H A   GH   +  +   +D      
Sbjct: 73  HDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLAAESD------ 125

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                         +++    G+T L +A   G  D V +L  
Sbjct: 126 ------------------------------LHRRDARGLTPLELALQRGAQDLVDILQG 154

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  103 bits (258), Expect = 2e-25
 Identities = 36/191 (18%), Positives = 59/191 (30%), Gaps = 35/191 (18%)

Query: 2   QACRYGHWEVVQTLLLFRCNVTRADYL---SGRTALHFAAVN---GHVRCIRLVVADFVP 55
           +    G   ++  LL  +  +T  ++    +G+T L  A +N   G    I +++     
Sbjct: 15  RGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL----- 69

Query: 56  SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 115
               ++            S  +    +             G TALH+A        V+LL
Sbjct: 70  ----DIAEKTGNMREFINSPFRDVYYR-------------GQTALHIAIERRCKHYVELL 112

Query: 116 LDLHANVSA----VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN-- 169
           ++  A+V A      F           G  PL  AAC         L   G  +  L   
Sbjct: 113 VEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQ 172

Query: 170 -CNGWLPLDVA 179
              G   L   
Sbjct: 173 DSRGNTVLHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 38/211 (18%), Positives = 57/211 (27%), Gaps = 60/211 (28%)

Query: 4   CRYGHWEVVQTLLLFRCNVT----------RADYLSGRTALHFAAVNGHVRCIRLVVADF 53
              G  + +  LL                 R  Y  G+TALH A        + L+V   
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE-- 114

Query: 54  VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS-KFVNKAADGGITALHMAALNGYFDCV 112
                              G+ V ++        K        G   L +AA       V
Sbjct: 115 ------------------KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156

Query: 113 QLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLS 160
             L +     A++                G+T LH      +          K   +LL 
Sbjct: 157 HYLTENGHKQADLRRQDSR----------GNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 161 RGAS-------RMSLNCNGWLPLDVARMWGR 184
           + A           LN +G  PL +A   G+
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.0 bits (187), Expect = 8e-16
 Identities = 26/184 (14%), Positives = 45/184 (24%), Gaps = 55/184 (29%)

Query: 3   ACRYGHWEVVQTLL-------------LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 49
           A        V+ L+              F+       +  G   L  AA       +  +
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 50  VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG-- 107
                              + G       + D       + +    G T LH        
Sbjct: 160 T------------------ENG-----HKQAD-------LRRQDSRGNTVLHALVAIADN 189

Query: 108 -------YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
                        LLL   A +     +    ++    G +PL  AA  G +   Q ++ 
Sbjct: 190 TRENTKFVTKMYDLLLIKCAKLFP-DTNLEALLNN--DGLSPLMMAAKTGKIGIFQHIIR 246

Query: 161 RGAS 164
           R  +
Sbjct: 247 REIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 21/130 (16%)

Query: 3   ACRYGHWEVVQTLL---LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 59
           A       +V  L      + ++ R D   G T LH                 FV  + +
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDS-RGNTVLHALVAIADNTR---ENTKFVTKM-Y 201

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
           +++  +        + +    +  AL   +N     G++ L MAA  G     Q ++   
Sbjct: 202 DLLLIK-------CAKLFPDTNLEAL---LNND---GLSPLMMAAKTGKIGIFQHIIRRE 248

Query: 120 ANVSAVTFHY 129
              +A   H+
Sbjct: 249 IADAAAHHHH 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 24/100 (24%)

Query: 98  TALHMAALNG----YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA---CGG 150
             L      G        +  LL     ++   F   ++      G T L  A      G
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPST------GKTCLPKALLNLSAG 60

Query: 151 NLKCCQVLLSRGASRMSL-----------NCNGWLPLDVA 179
                 +LL       ++              G   L +A
Sbjct: 61  RNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIA 100

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  103 bits (259), Expect = 3e-25
 Identities = 39/192 (20%), Positives = 58/192 (30%), Gaps = 59/192 (30%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           ++A +    ++VQ LL    NV   +   G T LH A        + L++   AD     
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD----- 64

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                                 G T   +AA+ G    ++L L 
Sbjct: 65  -------------------------------PVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA----------SRMS 167
             A+V+   F+          G T    AA  G +K  + L  RGA           +  
Sbjct: 94  KGADVNECDFY----------GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143

Query: 168 LNCNGWLPLDVA 179
           L   G   L  A
Sbjct: 144 LRKGGATALMDA 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  103 bits (259), Expect = 3e-25
 Identities = 39/189 (20%), Positives = 64/189 (33%), Gaps = 41/189 (21%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A +    ++V+ LL    +       +G T    AA+ G V+ ++L +   AD     
Sbjct: 44  HNAVQMSREDIVELLLRHGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGAD----- 97

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN+    G TA   AA+ G    ++ L  
Sbjct: 98  -------------------------------VNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPL 176
             ANV+           L   G+T L  AA  G+++  ++LL   GA   + +  G   L
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 177 DVARMWGRH 185
             A +    
Sbjct: 187 IHALLSSDD 195

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 98.3 bits (246), Expect = 2e-23
 Identities = 36/172 (20%), Positives = 51/172 (29%), Gaps = 56/172 (32%)

Query: 1   MQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAAVNGHVRCIRLVV-------AD 52
           M A   GH EV++ LL     +V   D   GR AL  A ++     +  +        AD
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 53  FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 112
                                               VN   + G T L +A    +   V
Sbjct: 212 ------------------------------------VNVRGERGKTPLILAVEKKHLGLV 235

Query: 113 QLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           Q LL+     ++               G T L  A      K  ++L  RGA
Sbjct: 236 QRLLEQEHIEINDTDSD----------GKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 97.9 bits (245), Expect = 3e-23
 Identities = 40/187 (21%), Positives = 66/187 (35%), Gaps = 45/187 (24%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           + A   G  ++++  L    +V   D+  G TA   AAV G V+ ++ +    A+     
Sbjct: 77  LLAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALKFLYKRGAN----- 130

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
               +N + +                       +   GG TAL  AA  G+ + +++LLD
Sbjct: 131 ----VNLRRKTKED-----------------QERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 118 LH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC----QVLLSRGASRMSLNCNG 172
              A+V+A              G   L  A    +         +LL  GA        G
Sbjct: 170 EMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 173 WLPLDVA 179
             PL +A
Sbjct: 220 KTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.1 bits (217), Expect = 2e-19
 Identities = 43/203 (21%), Positives = 61/203 (30%), Gaps = 64/203 (31%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRAD---------YLSGRTALHFAAVNGHVRCIRLVV- 50
           M+A  YG  + ++ L     NV                G TAL  AA  GHV  +++++ 
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 51  ---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 107
              AD                                    VN   + G  AL  A L+ 
Sbjct: 170 EMGAD------------------------------------VNACDNMGRNALIHALLSS 193

Query: 108 YFDC----VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-G 162
                     LLLD  A+V+               G TPL  A    +L   Q LL +  
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHLGLVQRLLEQEH 243

Query: 163 ASRMSLNCNGWLPLDVARMWGRH 185
                 + +G   L +A      
Sbjct: 244 IEINDTDSDGKTALLLAVELKLK 266

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 50/154 (32%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
               L  A  N  V  ++ ++   A+                                  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN---------------------------------- 30

Query: 87  KFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
             VN +  +GG T LH A      D V+LLL   A+      +          G+TP   
Sbjct: 31  --VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN----------GATPFLL 78

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           AA  G++K  ++ LS+GA     +  G+     A
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.9 bits (180), Expect = 1e-14
 Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 92  AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 151
           AA      L  A  N   D VQ LL+  ANV+               G TPLH A     
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG---------GWTPLHNAVQMSR 51

Query: 152 LKCCQVLLSRGASRMSLNCNGWLPLDVA 179
               ++LL  GA  +    NG  P  +A
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLA 79

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 37/128 (28%)

Query: 1   MQACRYGHW----EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS 56
           + A           +   LL    +V       G+T L  A    H+             
Sbjct: 187 IHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHL------------- 232

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
               ++   +E +  +                +N     G TAL +A         +LL 
Sbjct: 233 ---GLVQRLLEQEHIE----------------INDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 117 DLHANVSA 124
              A+   
Sbjct: 274 KRGASTDC 281

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 99.0 bits (248), Expect = 4e-25
 Identities = 37/153 (24%), Positives = 57/153 (37%), Gaps = 49/153 (32%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
           G T LH A++ G +  +  ++   +D                                  
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSD---------------------------------- 35

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
              N     G T LH A  +G+   V+LLL   A V+   +             +PLH A
Sbjct: 36  --PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDA 83

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           A  G++   ++LLS GASR ++N  G  P+D  
Sbjct: 84  AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 93.6 bits (234), Expect = 3e-23
 Identities = 34/165 (20%), Positives = 53/165 (32%), Gaps = 50/165 (30%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A   G    V+ LL    +    D+ +G T LH A  +GH++ + L++   A        
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHGHLKVVELLLQHKAL------- 68

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN       + LH AA NG+ D V+LLL   
Sbjct: 69  -----------------------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
           A+ +AV             G  P+ +           +     +S
Sbjct: 100 ASRNAVNIF----------GLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.1 bits (191), Expect = 3e-17
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
                 G  T LH+A++ G    V+ LL   ++ +              AG TPLH A  
Sbjct: 4   PFTNHRG-ETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------AGWTPLHEACN 52

Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
            G+LK  ++LL   A   +       PL  A   G  
Sbjct: 53  HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV 89

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 69.4 bits (171), Expect = 1e-14
 Identities = 25/125 (20%), Positives = 39/125 (31%), Gaps = 41/125 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           AC +GH +VV+ LL  +  V    Y    + LH AA NGHV  ++L++   A        
Sbjct: 50  ACNHGHLKVVELLLQHKALVNTTGY-QNDSPLHDAAKNGHVDIVKLLLSYGAS------- 101

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                         N     G+  +           + L    +
Sbjct: 102 -----------------------------RNAVNIFGLRPVDYTDDESMKSLLLLPEK-N 131

Query: 120 ANVSA 124
            + SA
Sbjct: 132 ESSSA 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 97.5 bits (244), Expect = 1e-24
 Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 52/167 (31%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A   G  E V+ LL    +    +   GR  +      G  +   L++   A+     
Sbjct: 17  ATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMM-MGSAQVAELLLLHGAE----- 69

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLL 116
                                           N A    +T  +H AA  G+ D + +L 
Sbjct: 70  -------------------------------PNCADPATLTRPVHDAAREGFLDTLVVLH 98

Query: 117 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
              A +                G  P+  A   G+    + L +   
Sbjct: 99  RAGARLDVCD----------AWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 94.4 bits (236), Expect = 2e-23
 Identities = 33/158 (20%), Positives = 44/158 (27%), Gaps = 49/158 (31%)

Query: 29  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 85
           S    L  AA  G V  +R ++   AD                                 
Sbjct: 11  SSDAGLATAAARGQVETVRQLLEAGAD--------------------------------- 37

Query: 86  SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
               N     G   + +    G     +LLL   A  +       T          P+H 
Sbjct: 38  ---PNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLT---------RPVHD 84

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 183
           AA  G L    VL   GA     +  G LP+D+A   G
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           ++         L  AA  G  + V+ LL+  A+ +A+             G  P+     
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF----------GRRPIQVMMM 54

Query: 149 GGNLKCCQVLLSRGASRMSLNC---NGW-LPLDVARMWG 183
            G+ +  ++LL  GA     NC        P+  A   G
Sbjct: 55  -GSAQVAELLLLHGA---EPNCADPATLTRPVHDAAREG 89

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.5 bits (166), Expect = 7e-14
 Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 40/124 (32%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
                 G  +V + LLL       AD  +    +H AA  G +  + ++    A      
Sbjct: 50  QVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR----- 103

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          ++     G   + +A   G+ D  + L  
Sbjct: 104 -------------------------------LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

Query: 118 LHAN 121
              +
Sbjct: 133 ATGD 136

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 99.4 bits (249), Expect = 1e-24
 Identities = 39/188 (20%), Positives = 60/188 (31%), Gaps = 50/188 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           M AC  G    +  L+     +   D   G TAL +A  N  +     ++   ++     
Sbjct: 40  MVACMLGMENAIDKLVENFDKLEDKDI-EGSTALIWAVKNNRLGIAEKLLSKGSN----- 93

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN     G T L  + + GY +    LL+
Sbjct: 94  -------------------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLE 122

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 177
             ANV+               G TPL  A+  G  +  + LL  GA   + +  G     
Sbjct: 123 HGANVNDRNLE----------GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172

Query: 178 VARMWGRH 185
            AR++GR 
Sbjct: 173 SARIFGRQ 180

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.4 bits (205), Expect = 1e-18
 Identities = 30/163 (18%), Positives = 53/163 (32%), Gaps = 50/163 (30%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           + A +     + + LL    NV   D+ SG+T L ++ + G+      ++   A+     
Sbjct: 73  IWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMWSIIFGYSEMSYFLLEHGAN----- 126

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN     G T L +A+  G  + V+ LL+
Sbjct: 127 -------------------------------VNDRNLEGETPLIVASKYGRSEIVKKLLE 155

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
           L A++SA              G T    A   G  +  ++   
Sbjct: 156 LGADISARDLT----------GLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 78.2 bits (194), Expect = 4e-17
 Identities = 35/159 (22%), Positives = 46/159 (28%), Gaps = 49/159 (30%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
            RT L  A + G    I  +V                                       
Sbjct: 35  NRTPLMVACMLGMENAIDKLVENFDK---------------------------------- 60

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
             +      G TAL  A  N      + LL   +NV+   F           G TPL ++
Sbjct: 61  --LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS----------GKTPLMWS 108

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
              G  +    LL  GA+    N  G  PL VA  +GR 
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS 147

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 71.7 bits (177), Expect = 7e-15
 Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 49/155 (31%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G                     DF+                                   
Sbjct: 8   GEIVEKIKDEKSI-----NQNLDFL----------------------------------R 28

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           N       T L +A + G  + +  L++    +                GST L +A   
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE----------GSTALIWAVKN 78

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
             L   + LLS+G++  + + +G  PL  + ++G 
Sbjct: 79  NRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  100 bits (250), Expect = 3e-24
 Identities = 40/196 (20%), Positives = 55/196 (28%), Gaps = 42/196 (21%)

Query: 2   QACRYGHWEVVQTLLLF--------RCNVTRADYLSGRTALHFAAVN---GHVRCIR-LV 49
                G  E +  LL +          +       +G+T L  A +N   G   CI  L+
Sbjct: 8   SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS-TGKTCLMKAVLNLQDGVNACIMPLL 66

Query: 50  VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 109
             D     P  ++N Q                              G +ALH+A      
Sbjct: 67  QIDKDSGNPKPLVNAQ-----------------------CTDEFYQGHSALHIAIEKRSL 103

Query: 110 DCVQLLLDLHANVSAVTFHYGTSMDLIGA---GSTPLHFAACGGNLKCCQVLLSRGASRM 166
            CV+LL++  A+V                   G  PL  AAC         LL       
Sbjct: 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA 163

Query: 167 SLN---CNGWLPLDVA 179
           SL      G   L   
Sbjct: 164 SLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 95.2 bits (237), Expect = 1e-22
 Identities = 35/200 (17%), Positives = 60/200 (30%), Gaps = 39/200 (19%)

Query: 4   CRYGHWEVVQTLLLFRCNV----------TRADYLSGRTALHFAAVNGHVRCIRLVVADF 53
            + G    +  LL    +              ++  G +ALH A     ++C++L+V + 
Sbjct: 54  LQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN- 112

Query: 54  VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 113
                              G+ V  +       K        G   L +AA    +D V 
Sbjct: 113 -------------------GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

Query: 114 LLLD---LHANVSAVT------FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
            LL+     A++ A         H    +      ++ L      G L+    L      
Sbjct: 154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL 213

Query: 165 RMSLNCNGWLPLDVARMWGR 184
               N  G  PL +A   G+
Sbjct: 214 EEISNHQGLTPLKLAAKEGK 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 91.4 bits (227), Expect = 3e-21
 Identities = 25/175 (14%), Positives = 42/175 (24%), Gaps = 38/175 (21%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLS------------GRTALHFAAVNGHVRCIRLVV 50
           A      + V+ L+    +V                   G   L  AA       +  ++
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 51  ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG-GITALHMAALNGYF 109
                              +            + L   V  A +    +AL +   +G  
Sbjct: 157 E---------------NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL 201

Query: 110 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
                L                       G TPL  AA  G ++  + +L R  S
Sbjct: 202 QMGARLCPTVQLEEISN----------HQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 27/165 (16%), Positives = 44/165 (26%), Gaps = 30/165 (18%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
            R  L      G    +  ++     +  +   +                          
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS-------------------------A 36

Query: 90  NKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSM-DLIGAGSTPLHF 145
                 G T L  A LN   G   C+  LL +  +             D    G + LH 
Sbjct: 37  YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 190
           A    +L+C ++L+  GA      C  +        +    L PL
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL-PL 140

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.1 bits (164), Expect = 8e-13
 Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 25/128 (19%)

Query: 3   ACRYGHWEVVQTLL---LFRCNVTRADYLSGRTALHFAAVNGHVRCIR--LVVADFVPSV 57
           A     W+VV  LL       ++   D L G T LH   +          LV+       
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSL-GNTVLHALVMIADNSPENSALVIH------ 195

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
              + +  ++            C    L +  N     G+T L +AA  G  +  + +L 
Sbjct: 196 ---MYDGLLQ-------MGARLCPTVQLEEISNHQ---GLTPLKLAAKEGKIEIFRHILQ 242

Query: 118 LHANVSAV 125
              + +A 
Sbjct: 243 REFSGAAA 250

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 99.5 bits (248), Expect = 7e-24
 Identities = 38/198 (19%), Positives = 61/198 (30%), Gaps = 39/198 (19%)

Query: 3   ACRYGHWEVVQTLLLFR-------CNVTRADYLSGRTALHFAAVN---GHVRCIRLVVAD 52
           A    + + +++LL F         +    D  +G+T L  A +N   G    I L++  
Sbjct: 20  AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLL-- 77

Query: 53  FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 112
                           D    +    +     ++     +   G TALH+A        V
Sbjct: 78  ----------------DVARKTDSLKQF----VNASYTDSYYKGQTALHIAIERRNMTLV 117

Query: 113 QLLLDLHANVSAVT----FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 168
            LL++  A+V A      F           G  PL  AAC   L   + LL        +
Sbjct: 118 TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI 177

Query: 169 NC---NGWLPLDVARMWG 183
           +     G   L       
Sbjct: 178 SARDSVGNTVLHALVEVA 195

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 82.5 bits (204), Expect = 6e-18
 Identities = 25/200 (12%), Positives = 44/200 (22%), Gaps = 56/200 (28%)

Query: 3   ACRYGHWEVVQTLL-------------LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 49
           A    +  +V  L+              F+    R  +  G   L  AA    +  ++ +
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 50  VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 109
           +                              D       ++     G T LH        
Sbjct: 168 L------------------QNSW-----QPAD-------ISARDSVGNTVLHALVEVADN 197

Query: 110 DCVQLLL-----DLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGA 163
                       +    + A         ++    G TPL  AA  G +     +L R  
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257

Query: 164 SRMSLNCNGWLPLDVARMWG 183
                  +       A    
Sbjct: 258 -------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 81.8 bits (202), Expect = 9e-18
 Identities = 34/206 (16%), Positives = 52/206 (25%), Gaps = 60/206 (29%)

Query: 4   CRYGHWEVVQTLLLFRCNVTRADYLS----------GRTALHFAAVNGHVRCIRLVVADF 53
              G  + +  LL                       G+TALH A    ++  + L+V + 
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN- 123

Query: 54  VPSVPFEVMNTQIEGDRGDGSSVKSK-CDQSALSKFVNKAADGGITALHMAALNGYFDCV 112
                              G+ V++                  G   L +AA       V
Sbjct: 124 -------------------GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

Query: 113 QLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----------------LK 153
           + LL      A++SA              G+T LH      +                L 
Sbjct: 165 KFLLQNSWQPADISARDSV----------GNTVLHALVEVADNTVDNTKFVTSMYNEILI 214

Query: 154 CCQVLLSRGASRMSLNCNGWLPLDVA 179
               L          N  G  PL +A
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTPLALA 240

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 81.4 bits (201), Expect = 1e-17
 Identities = 24/154 (15%), Positives = 40/154 (25%), Gaps = 42/154 (27%)

Query: 3   ACRYGHWEVVQTLL---LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 59
           A       +V+ LL       +++  D   G T LH                        
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDS-VGNTVLHALVEVADN---------------- 197

Query: 60  EVMNTQIEGDRGDG--SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
            V NT+      +              L +  N+    G+T L +AA +G    +  +L 
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK---GLTPLALAASSGKIGVLAYILQ 254

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 151
              +                      H AA   +
Sbjct: 255 REIH-----------------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 76.0 bits (187), Expect = 9e-16
 Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 29/165 (17%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
            R ++  A    + + +  ++                        S K   D        
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQ-------------------RSKKRLTDSEF----- 48

Query: 90  NKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSM-DLIGAGSTPLHF 145
            K  + G T L  A LN   G  D + LLLD+     ++      S  D    G T LH 
Sbjct: 49  -KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 190
           A    N+    +L+  GA   +     +      R        PL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 95.2 bits (238), Expect = 7e-24
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 49/153 (32%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
                 +A  NG +  ++  V    D                                  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGED---------------------------------- 32

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
             VN+  +GG   LH AA  G  + ++ LL   A+++A   H            TPL  A
Sbjct: 33  --VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH----------HITPLLSA 80

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
              G++ C ++LLS+GA +     +G    +  
Sbjct: 81  VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 88.2 bits (220), Expect = 2e-21
 Identities = 29/155 (18%), Positives = 44/155 (28%), Gaps = 50/155 (32%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           M A + G  + V+  +    +V R     GR  LH+AA  G +  +  ++   AD     
Sbjct: 12  MWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGAD----- 65

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          +N      IT L  A   G+  CV+LLL 
Sbjct: 66  -------------------------------INAPDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
             A+ +               G T           
Sbjct: 95  KGADKTVKGPD----------GLTAFEATDNQAIK 119

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 70.1 bits (173), Expect = 6e-15
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
                  A  NG  D V+  +    +V+               G  PLH+AA  G L+  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG----------GRKPLHYAADCGQLEIL 56

Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGR 184
           + LL +GA   + + +   PL  A   G 
Sbjct: 57  EFLLLKGADINAPDKHHITPLLSAVYEGH 85

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 40/116 (34%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A   G  E+++ LLL   ++   D     T L  A   GHV C++L++   AD     
Sbjct: 45  HYAADCGQLEILEFLLLKGADINAPDK-HHITPLLSAVYEGHVSCVKLLLSKGAD----- 98

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 113
                                                 G+TA            +Q
Sbjct: 99  -------------------------------KTVKGPDGLTAFEATDNQAIKALLQ 123

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 98.9 bits (247), Expect = 4e-23
 Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 49/193 (25%)

Query: 3   ACRYGHWEVVQTLLLFRC---NVTRADYLSGRTALHFAAVNGH---VRCIRLVV---ADF 53
           A     + ++  +L       ++   D  +G TAL   A N     V   +L+V   A  
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTALMIVAHNEGRDQVASAKLLVEKGAK- 263

Query: 54  VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 113
                       ++ D       +                  G TALH AA       V+
Sbjct: 264 ------------VDYDGAARKDSEKY---------------KGRTALHYAAQVSNMPIVK 296

Query: 114 LLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 172
            L+    +N                 G TP+  AA  G ++    L+ +GAS  +++   
Sbjct: 297 YLVGEKGSNKDKQDED----------GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 346

Query: 173 WLPLDVARMWGRH 185
                +A+    H
Sbjct: 347 HTARQLAQANNHH 359

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 98.1 bits (245), Expect = 8e-23
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 37/183 (20%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           M A       +V  L+    + T  +  S R+ALH AA N     +  ++          
Sbjct: 171 MLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYML---------- 219

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV---QLLLD 117
                        +S K K D       + +    G+TAL + A N   D V   +LL++
Sbjct: 220 -------------NSTKLKGD-------IEELDRNGMTALMIVAHNEGRDQVASAKLLVE 259

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPL 176
             A V         S      G T LH+AA   N+   + L+  +G+++   + +G  P+
Sbjct: 260 KGAKVDYDGAARKDSEKYK--GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317

Query: 177 DVA 179
            +A
Sbjct: 318 MLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 95.0 bits (237), Expect = 1e-21
 Identities = 28/177 (15%), Positives = 48/177 (27%), Gaps = 40/177 (22%)

Query: 6   YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 65
            G + + + +     N+    +   RT LH+ A N        ++              +
Sbjct: 103 AGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEA----------K 150

Query: 66  IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 125
                G         D       VN       T L +A L      V  L+   A+ +  
Sbjct: 151 ECIAAG--------AD-------VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 195

Query: 126 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS---RGASRMSLNCNGWLPLDVA 179
                          + LH AA   +      +L+          L+ NG   L + 
Sbjct: 196 NKS----------ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 28/178 (15%), Positives = 48/178 (26%), Gaps = 62/178 (34%)

Query: 1   MQACRYGHWEVVQT--LLL---------FRCNVTRADYLSGRTALHFAAVNGHVRCIRLV 49
           M        + V +  LL+                  Y  GRTALH+AA   ++  ++ +
Sbjct: 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY-KGRTALHYAAQVSNMPIVKYL 298

Query: 50  V----ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 105
           V    ++                                     +K  + G T + +AA 
Sbjct: 299 VGEKGSN------------------------------------KDKQDEDGKTPIMLAAQ 322

Query: 106 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
            G  + V  L+   A+V AV               T    A    +     +      
Sbjct: 323 EGRIEVVMYLIQQGASVEAVDAT----------DHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 29/204 (14%), Positives = 51/204 (25%), Gaps = 72/204 (35%)

Query: 1   MQACRYGHWEVVQTLLLFR--------CNVTRADYLSGRTALHFAAVNGHVRCIRLVV-- 50
                    E  + L++           +V   D     T L  A +    R +  ++  
Sbjct: 130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKA 188

Query: 51  -ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 109
            AD                                             +ALH AA N  F
Sbjct: 189 GAD------------------------------------PTIYNKSERSALHQAAANRDF 212

Query: 110 DCVQLLLDLH---ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---LKCCQVLLSRGA 163
             +  +L+      ++  +  +          G T L   A       +   ++L+ +GA
Sbjct: 213 GMMVYMLNSTKLKGDIEELDRN----------GMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 164 --------SRMSLNCNGWLPLDVA 179
                    + S    G   L  A
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYA 286

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 25/185 (13%), Positives = 38/185 (20%), Gaps = 54/185 (29%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
               G+  +           T  +       LH  A  G                   + 
Sbjct: 68  GYGNGNDFLGDFNHTNLQIPTEPEP-ESPIKLHTEA-AGSY----------------AIT 109

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                             +       +        T LH  A N   +  + L+      
Sbjct: 110 EPITR--ES--------VN-------IIDP-RHNRTVLHWIASNSSAEKSEDLIV----- 146

Query: 123 SAVTFHYGTSMDLIGA--------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 174
                H        GA         +TPL  A      +    L+  GA     N +   
Sbjct: 147 -----HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS 201

Query: 175 PLDVA 179
            L  A
Sbjct: 202 ALHQA 206

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 23/187 (12%), Positives = 49/187 (26%), Gaps = 63/187 (33%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A   G+ +  +  L          +            NG+       + DF  +    
Sbjct: 42  LEASYDGYIKRQRNEL---------QH-YSLYPNPQGYGNGN-----DFLGDFNHT---- 82

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                                   +     +        LH  A  G +   + +     
Sbjct: 83  ---------------------NLQI---PTEPEPESPIKLHTEA-AGSYAITEPITRESV 117

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL--------SRGASRMSLNCNG 172
           N+                  T LH+ A   + +  + L+        + GA   +++C+ 
Sbjct: 118 NIIDPRH-----------NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166

Query: 173 WLPLDVA 179
             PL +A
Sbjct: 167 NTPLMLA 173

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.7 bits (153), Expect = 7e-11
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 41/124 (33%)

Query: 3   ACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVP 58
           A +  +  +V+ L+  +  N  + D   G+T +  AA  G +  +  ++   A       
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGRIEVVMYLIQQGAS------ 338

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                                         V        TA  +A  N + + V +    
Sbjct: 339 ------------------------------VEAVDATDHTARQLAQANNHHNIVDIFDRC 368

Query: 119 HANV 122
               
Sbjct: 369 RPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 9/90 (10%), Positives = 19/90 (21%), Gaps = 19/90 (21%)

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           +++      +L  A+ +GY    +  L  +                      P       
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQRNELQHY-------------------SLYPNPQGYGN 71

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           GN        +             + L   
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTE 101

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 95.8 bits (239), Expect = 5e-23
 Identities = 33/181 (18%), Positives = 48/181 (26%), Gaps = 51/181 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           + A   G  EVVQ  +    + ++ +   G TALH A    +   +  ++   A+     
Sbjct: 26  LDAALTGELEVVQQAVKEMNDPSQPNE-EGITALHNAICGANYSIVDFLITAGAN----- 79

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN     G T LH AA          L+ 
Sbjct: 80  -------------------------------VNSPDSHGWTPLHCAASCNDTVICMALVQ 108

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACG--GNLKCCQVLLSRGASRMSLNCNGWLP 175
             A + A T            G+T          G   C   L     S   +N      
Sbjct: 109 HGAAIFATTLSD---------GATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159

Query: 176 L 176
           L
Sbjct: 160 L 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 90.8 bits (226), Expect = 3e-21
 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 52/174 (29%)

Query: 12  VQTLLLFRCNVTRAD--YLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQI 66
           ++++L    +  +A    L+    L  AA+ G +  ++  V    D              
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-------------- 46

Query: 67  EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 126
                                  ++  + GITALH A     +  V  L+   ANV++  
Sbjct: 47  ----------------------PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84

Query: 127 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN-GWLPLDVA 179
            H          G TPLH AA   +   C  L+  GA+  +   + G    +  
Sbjct: 85  SH----------GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 31/212 (14%), Positives = 52/212 (24%), Gaps = 61/212 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A    ++ +V  L+    NV   D   G T LH AA          +V          
Sbjct: 59  HNAICGANYSIVDFLITAGANVNSPDS-HGWTPLHCAASCNDTVICMALV---------- 107

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFDCVQLLLDL 118
                       G+++ +                 G TA         GY DC   L D+
Sbjct: 108 ----------QHGAAIFATTLSD------------GATAFEKCDPYREGYADCATYLADV 145

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV 178
             ++  +                 L   +     +          + +  +         
Sbjct: 146 EQSMGLMN----------SGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWW 194

Query: 179 ARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSL 210
           A + G+              +PR    NY  L
Sbjct: 195 AALHGQE-----------GYVPR----NYFGL 211

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.0 bits (185), Expect = 1e-15
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
             +A    +  L  AAL G  + VQ  +    + S               G T LH A C
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE----------GITALHNAIC 63

Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 183
           G N      L++ GA+  S + +GW PL  A    
Sbjct: 64  GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 91.9 bits (228), Expect = 2e-21
 Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 50/192 (26%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A      E+ + +L  +   TR D    RTALH+A   GH   +  ++            
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVP------- 65

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN   D G + LH+AA  G  + V+ LL   
Sbjct: 66  -----------------------------VNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           A+V+AV  +          G TPLH+AA     +   +LL  GA+  + +      +  A
Sbjct: 97  AHVNAVNQN----------GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146

Query: 180 RMWGRHWLEPLL 191
              G   +  +L
Sbjct: 147 AAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 91.1 bits (226), Expect = 3e-21
 Identities = 43/181 (23%), Positives = 66/181 (36%), Gaps = 17/181 (9%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           AC  GH E+V+ LL     V   D  +G + LH AA  G    ++ ++   A        
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                     +          +  A     +       TA+H AA  G    V +LL   
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGA---NPDAKDHYDATAMHRAAAKGNLKMVHILLFYK 162

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           A+ +               G+TPLH A     ++  + L+++GAS    N     PL VA
Sbjct: 163 ASTNIQDTE----------GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

Query: 180 R 180
           +
Sbjct: 213 K 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 49/166 (29%)

Query: 29  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 85
           S     + A           ++   +                                  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL--------------------------------- 32

Query: 86  SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
                +      TALH A   G+ + V+ LL L   V+               G +PLH 
Sbjct: 33  ---ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA----------GWSPLHI 79

Query: 146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           AA  G  +  + LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 91  KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 150
           +     I   ++A      +  + +L   +  +                 T LH+A   G
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQD----------SRTALHWACSAG 51

Query: 151 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           + +  + LL  G      +  GW PL +A
Sbjct: 52  HTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 90.6 bits (226), Expect = 2e-21
 Identities = 31/191 (16%), Positives = 56/191 (29%), Gaps = 49/191 (25%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A      E+ + L+    ++   +     +   +A   G                  E
Sbjct: 44  NIAVHNNDIEIAKALIDRGADINLQNS-ISDSPYLYAGAQGRT----------------E 86

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-H 119
           ++   ++    D                +NK    G  AL  AA  G+ D V+LLL+   
Sbjct: 87  ILAYMLKHATPD----------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGR 130

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACG-----GNLKCCQVLLSRGASRMSLNCNGWL 174
            ++                G T L  A              ++L+  GA +   + +G  
Sbjct: 131 EDIDFQNDF----------GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRT 180

Query: 175 PLDVARMWGRH 185
            +D A   G  
Sbjct: 181 AMDYANQKGYT 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 88.3 bits (220), Expect = 1e-20
 Identities = 28/184 (15%), Positives = 50/184 (27%), Gaps = 52/184 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A +    +V + L      V   D   G T L+ A  N  +   + ++   AD     
Sbjct: 11  EAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGAD----- 64

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          +N       +    A   G  + +  +L 
Sbjct: 65  -------------------------------INLQNSISDSPYLYAGAQGRTEILAYMLK 93

Query: 118 LHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLP 175
               +++    +          G   L  AA  G++   ++LL  G       N  G+  
Sbjct: 94  HATPDLNKHNRY----------GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA 143

Query: 176 LDVA 179
           L  A
Sbjct: 144 LIEA 147

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.0 bits (201), Expect = 6e-18
 Identities = 32/166 (19%), Positives = 56/166 (33%), Gaps = 49/166 (29%)

Query: 1   MQACRYGHWEVVQTLLLFR-CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 59
           + A   G  E++  +L     ++ + +   G  AL  AA  GH+                
Sbjct: 77  LYAGAQGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGHI---------------- 119

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL-----NGYFDCVQL 114
           + +   +E  R D                ++   D G TAL  A         Y D V+L
Sbjct: 120 DNVKLLLEDGRED----------------IDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

Query: 115 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
           L++  A+ S              +G T + +A   G  +  ++L  
Sbjct: 164 LMENGADQSIKD----------NSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 76.3 bits (189), Expect = 2e-16
 Identities = 20/151 (13%), Positives = 38/151 (25%), Gaps = 44/151 (29%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
               L  A      +   ++                   D                   V
Sbjct: 6   VGALLEAANQRDTKKVKEILQ------------------DTT--------YQ-------V 32

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           ++    G T L++A  N   +  + L+D  A+++                 +P  +A   
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI----------SDSPYLYAGAQ 82

Query: 150 GNLKCCQVLLSRGASRM-SLNCNGWLPLDVA 179
           G  +    +L      +   N  G   L  A
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 94  DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
                 L  A         ++L D    V  V             G+TPL+ A    +++
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE----------GNTPLNIAVHNNDIE 53

Query: 154 CCQVLLSRGASRMSLNCNGWLPLDVA 179
             + L+ RGA     N     P   A
Sbjct: 54  IAKALIDRGADINLQNSISDSPYLYA 79

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 87.4 bits (218), Expect = 3e-21
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 49/150 (32%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
           G T LH AA NGH   ++ ++   AD                                  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGAD---------------------------------- 34

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
             VN  +  G T LH+AA NG+ + V+LLL   A+V+A +            G+TP H A
Sbjct: 35  --VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD----------GNTPEHLA 82

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPL 176
              G+ +  ++L ++GA   + +       
Sbjct: 83  KKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 79.7 bits (198), Expect = 2e-18
 Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 50/147 (34%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
             A + GH E V+ LL    +V       G T LH AA NGH   ++L++   AD     
Sbjct: 14  HNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGAD----- 67

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                          VN  +  G T  H+A  NG+ + V+LL  
Sbjct: 68  -------------------------------VNARSKDGNTPEHLAKKNGHHEIVKLLDA 96

Query: 118 LHANVSAVTFHYGTSMDLIGAGSTPLH 144
             A+V+A ++            S   H
Sbjct: 97  KGADVNARSWG----------SSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 74.7 bits (185), Expect = 9e-17
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
              +  G T LH AA NG+ + V+ LL   A+V+A +            G+TPLH AA  
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD----------GNTPLHLAAKN 52

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           G+ +  ++LL++GA   + + +G  P  +A+  G H
Sbjct: 53  GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.5 bits (219), Expect = 1e-19
 Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 43/203 (21%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGH---VRCIRLVVADFVPSVPF 59
                + E+V+ L+    N    D   G + L  A  + +         ++    P +  
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-- 194

Query: 60  EVMNTQ-------------IEGDRGDGSSVKSKCDQSALSKFVNKAA------DGGITAL 100
                +               G  G  ++ K   D   +   V K             + 
Sbjct: 195 ---ILEDSMNRTILHHIIITSGMTGCSAAAKYYLD-ILMGWIVKKQNRPIQSGTNEKESK 250

Query: 101 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA----GSTPLHFAACGGNLKCCQ 156
                    D +   LDL   ++           ++ A    G T L+ AA  GN+    
Sbjct: 251 PNDKNGERKDSILENLDLKWIIAN----------MLNAQDSNGDTCLNIAARLGNISIVD 300

Query: 157 VLLSRGASRMSLNCNGWLPLDVA 179
            LL  GA     N +G  P+D  
Sbjct: 301 ALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.5 bits (193), Expect = 3e-16
 Identities = 26/167 (15%), Positives = 48/167 (28%), Gaps = 31/167 (18%)

Query: 1   MQACRYGHWEVVQT----LLLFRCNVTRADYLSGRTALHFAAVN----GHVRCIRL---V 49
           ++A +  +     T    L      +   D    RT LH   +     G     +    +
Sbjct: 169 VKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITSGMTGCSAAAKYYLDI 227

Query: 50  VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA---------LSKFVNKAADGGITAL 100
           +  ++       + +         +    +   S          ++  +N     G T L
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287

Query: 101 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
           ++AA  G    V  LLD  A+                 G  P+ F A
Sbjct: 288 NIAARLGNISIVDALLDYGADPFIANKS----------GLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 91  KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 150
           +         H++  +   +      +   N++     +G         +TPLH+     
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG---------NTPLHWLTSIA 142

Query: 151 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 179
           NL+  + L+  G++R+  +  G   L  A
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 18/151 (11%), Positives = 35/151 (23%), Gaps = 53/151 (35%)

Query: 10  EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQI 66
           EV       + N+       G T LH+     ++  ++ +V   ++              
Sbjct: 111 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-------------- 156

Query: 67  EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG---YFDCVQLLLD-LHANV 122
                                      + G + L  A  +         + LLD L+  +
Sbjct: 157 ----------------------RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL 194

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 153
                             T LH       + 
Sbjct: 195 ILEDSM----------NRTILHHIIITSGMT 215

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.4 bits (205), Expect = 1e-19
 Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 49/138 (35%)

Query: 29  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 85
           +GRT LH AA NGH+  ++L++   AD                                 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------- 27

Query: 86  SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 145
              VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH 
Sbjct: 28  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHL 74

Query: 146 AACGGNLKCCQVLLSRGA 163
           AA  G+L+  ++LL  GA
Sbjct: 75  AARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 73.9 bits (183), Expect = 1e-16
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA  G+L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51

Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWG 183
           ++LL  GA   + + NG  PL +A   G
Sbjct: 52  KLLLEAGADVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 68.5 bits (169), Expect = 9e-15
 Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 40/118 (33%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R GH EVV+ LL    +V   D  +GRT LH AA NGH+  ++L++   AD       
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAD------- 60

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
                                        VN     G T LH+AA NG+ + V+LLL+
Sbjct: 61  -----------------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 49.3 bits (119), Expect = 6e-08
 Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 1  MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 48
            A R GH EVV+ LL    +V   D  +GRT LH AA NGH+  ++L
Sbjct: 40 HLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKL 86

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 34/161 (21%), Positives = 55/161 (34%), Gaps = 50/161 (31%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
           A R G  + V+ L+    +V   D   G T L+ A  +GH+  + +++   AD       
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLKNGAD------- 72

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        VN     G T LH+AA  G+ +  ++LL   
Sbjct: 73  -----------------------------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
           A+V+A              G T    +   GN    ++L  
Sbjct: 104 ADVNAQDKF----------GKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 80.1 bits (199), Expect = 2e-18
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 49/158 (31%)

Query: 30  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 86
               L  AA  G    +R+++   AD                                  
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGAD---------------------------------- 39

Query: 87  KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 146
             VN   + G+T L++A  +G+ + V++LL   A+V+AV             G TPLH A
Sbjct: 40  --VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI----------GFTPLHLA 87

Query: 147 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
           A  G+L+  +VLL  GA   + +  G    D++   G 
Sbjct: 88  AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 70.1 bits (173), Expect = 9e-15
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 93  ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
           +D G   L  AA  G  D V++L+   A+V+A   +          G TPL+ A   G+L
Sbjct: 12  SDLG-KKLLEAARAGQDDEVRILMANGADVNAKDEY----------GLTPLYLATAHGHL 60

Query: 153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           +  +VLL  GA   +++  G+ PL +A   G  
Sbjct: 61  EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL 93

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.9 bits (198), Expect = 1e-18
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 85  LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 144
           + +  +  +D G   L  AA  G  D V++L+   A+V+A   +          GSTPLH
Sbjct: 14  VPRGSHMGSDLG-KKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLH 62

Query: 145 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
            AA  G+L+  ++LL  GA   + +  G    D++   G   L  +L
Sbjct: 63  LAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.5 bits (197), Expect = 2e-18
 Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 53/159 (33%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 59
              + H      L+    ++  +D       L  AA  G    +R+++   AD       
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG-SD---LGKKLLEAARAGQDDEVRILMANGAD------- 49

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
                                        V      G T LH+AA NG+ + V+LLL+  
Sbjct: 50  -----------------------------VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 158
           A+V A              G T    +   GN    ++L
Sbjct: 81  ADVXAQDKF----------GKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 56.4 bits (137), Expect = 3e-10
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 13/77 (16%)

Query: 103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
            + + +      L+   +++ +                  L  AA  G     ++L++ G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS-------------DLGKKLLEAARAGQDDEVRILMANG 47

Query: 163 ASRMSLNCNGWLPLDVA 179
           A   + + NG  PL +A
Sbjct: 48  ADVAAKDKNGSTPLHLA 64

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 40/118 (33%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 57
           ++A R G  + V+ L+    +V   D  +G T LH AA NGH+  ++L++   AD     
Sbjct: 29  LEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGHLEVVKLLLEAGAD----- 82

Query: 58  PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 115
                                          V      G TA  ++  NG  D  ++L
Sbjct: 83  -------------------------------VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.5 bits (206), Expect = 1e-17
 Identities = 32/203 (15%), Positives = 51/203 (25%), Gaps = 25/203 (12%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLS-GRTALHFAAV-NGHVRCIRLVV---ADFVP 55
             A   GH  V+  L         A   +    A  +AAV  GH   I  ++        
Sbjct: 168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY 227

Query: 56  SVPFEVMNTQIE-----GDRGDGSSVKSKCDQSALSKFV-----NKAADGGITALHMAAL 105
           +   E    +           +         + +    V           G   L     
Sbjct: 228 AEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIR 287

Query: 106 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLI-GAGSTPLHFAACGGNLKCCQVLLSRGAS 164
                 +  +  L   +S            I G  +  L  A   GN   C +LLS  + 
Sbjct: 288 RNDEVLLDDIRFL---LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344

Query: 165 RMSLNCNGWL------PLDVARM 181
                 N +        LD+  +
Sbjct: 345 LALTKANNYYINETGGRLDLRAV 367

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 21/179 (11%), Positives = 35/179 (19%), Gaps = 43/179 (24%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 62
              Y H+      L    +               AA+ G    +  +             
Sbjct: 68  CLYYAHYNRNAKQLWSDAHKKGIK---SEVICFVAAITGCSSALDTLC------------ 112

Query: 63  NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 122
                        + S          V         A  +AA NG+   +  L +L    
Sbjct: 113 -----------LLLTSDEI-------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 154

Query: 123 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN--GWLPLDVA 179
                                  AA  G+L     L     +  +       +     A
Sbjct: 155 IMAMIQAE--------NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 5e-14
 Identities = 24/166 (14%), Positives = 40/166 (24%), Gaps = 45/166 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRAD-YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 59
             A   GH  V+  L         A        A   AA NGH+                
Sbjct: 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL---------------- 176

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL-NGYFDCVQLLLDL 118
            V              +   C+ +         A+    A   AA+  G+ + +  LLD 
Sbjct: 177 HV--------------LNRLCELAPTEATAMIQAENY-YAFRWAAVGRGHHNVINFLLDC 221

Query: 119 HANVSA------------VTFHYGTSMDLIGAGSTPLHFAACGGNL 152
              ++             V       ++ +         +   G  
Sbjct: 222 PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVF 267

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 20/173 (11%), Positives = 34/173 (19%), Gaps = 56/173 (32%)

Query: 3   ACRYGHWEVVQTLLLFRCNVTRADYL---------------------SGRTALHFAAVNG 41
           A   GH  V+  LL     +  A+                           A   +  +G
Sbjct: 206 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDG 265

Query: 42  HVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG--GITA 99
                 LV         + + N     D      ++       +      A         
Sbjct: 266 V---FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 322

Query: 100 LHMAA------------------------------LNGYFDCVQLLLDLHANV 122
           L +A                                 G  D   + L+ H + 
Sbjct: 323 LRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALEHHHHH 375

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 15/170 (8%), Positives = 33/170 (19%), Gaps = 45/170 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
                   +++   L+    ++       G T        G                  E
Sbjct: 47  RNNNDEARYKISMFLINKGADIKSRTK-EGTTLFFPLFQGGGNDITGTT----------E 95

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC------VQL 114
           +    +E  +G         D       +          +     N + D        +L
Sbjct: 96  LCKIFLE--KG--------AD-------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 115 LLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
           +       +                G T L F          +++     
Sbjct: 139 IFSQSGLQLLIKDKW----------GLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 75.9 bits (187), Expect = 3e-16
 Identities = 18/204 (8%), Positives = 46/204 (22%), Gaps = 54/204 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G +E    L          + +     L+    N +      +    +      
Sbjct: 11  SAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLI------ 62

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD------CVQL 114
                   ++G         D       +      G T        G  D        ++
Sbjct: 63  --------NKG--------AD-------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKI 99

Query: 115 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ-------VLLSRGASRMS 167
            L+  A+++A+                 +        +   +       +    G   + 
Sbjct: 100 FLEKGADITALYKP----------YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 168 LNCNGWLPLDVARMWGRHWLEPLL 191
            +  G   L+  +   +     ++
Sbjct: 150 KDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 20/165 (12%), Positives = 42/165 (25%), Gaps = 46/165 (27%)

Query: 25  ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 84
           ++ +S    +  AA+ G       +                       G   K    +S 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEK--------------------GYEDKESVLKSN 40

Query: 85  LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 144
           +              L        +     L++  A++ + T            G+T   
Sbjct: 41  I----------LYDVLRNNNDEARYKISMFLINKGADIKSRTKE----------GTTLFF 80

Query: 145 FAACGGN------LKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 183
               GG        + C++ L +GA   +L     + +       
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 33/130 (25%)

Query: 1   MQACRYGHWEVVQTLLLFR------CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 54
               + G  ++  T  L +       ++T       +  +     N       +   + +
Sbjct: 80  FPLFQGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFNYF-----VDENEMI 133

Query: 55  PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 114
           P                     +S          +      G+TAL           +++
Sbjct: 134 PLYKLIF--------------SQSGLQ-------LLIKDKWGLTALEFVKRCQKPIALKM 172

Query: 115 LLDLHANVSA 124
           + D     + 
Sbjct: 173 MEDYIKKYNL 182

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.2 bits (143), Expect = 5e-10
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 96  GITALHMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
             TALH+A  +        V  L+    N+   T            GST LH+     N 
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK----------GSTALHYCCLTDNA 218

Query: 153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           +C ++LL   AS    N +G  PLD+A+       E LL
Sbjct: 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
           ++K    G TALH   L    +C++LLL   A++               +G TPL  A  
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN----------ESGETPLDIAKR 247

Query: 149 GGNLKCCQVLLSRGASRMSLNCN 171
             +  C ++L    + R + + +
Sbjct: 248 LKHEHCEELLTQALSGRFNSHVH 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.1 bits (140), Expect = 1e-09
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 96  GITALHMAALNGY---FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
               LH+A           V  ++    ++ A              G+T LH+AA     
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD----------GNTALHYAALYNQP 239

Query: 153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
            C ++LL   A   ++N  G   LD+AR       E LL
Sbjct: 240 DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.4 bits (94), Expect = 7e-04
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 37/123 (30%)

Query: 2   QACRYGHW---EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP 58
            A +  +     +V  ++    ++       G TALH+AA+     C++L+         
Sbjct: 196 LAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTALHYAALYNQPDCLKLL--------- 245

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                            +K +     +++        G TAL +A    + +C +LL   
Sbjct: 246 -----------------LKGRALVGTVNE-------AGETALDIARKKHHKECEELLEQA 281

Query: 119 HAN 121
            A 
Sbjct: 282 QAG 284

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 96  GITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 152
               LH+A           V  ++    ++ A              G+T LH+AA     
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD----------GNTALHYAALYNQP 220

Query: 153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
            C ++LL   A   ++N  G   LD+AR       E LL
Sbjct: 221 DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 7e-09
 Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
             T L  A         + LL   ANV+               G  PLH A   G+    
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSA----------GRGPLHHATILGHTGLA 284

Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
            + L RGA   + +  G  PL +A       +  LL
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.98
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.78
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.63
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.54
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.49
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.18
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.17
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.14
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.13
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.05
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	96.79
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.73
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	96.72
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	96.65
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	96.62
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	96.62
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	96.61
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	96.59
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.57
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	96.55
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	96.53
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	96.5
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	96.44
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	96.41
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	96.37
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	96.3
2ect_A	78	Ring finger protein 126; metal binding protein, st	96.25
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	96.2
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	96.18
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	96.15
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	96.13
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	96.08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	96.02
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	96.02
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	95.97
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	95.97
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	95.88
1z6u_A	150	NP95-like ring finger protein isoform B; structura	95.79
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	95.74
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	95.72
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	95.61
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	95.6
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	95.6
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	95.47
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	95.37
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	95.2
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	95.14
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	95.06
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	94.66
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	94.65
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	94.52
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	94.34
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	93.94
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	93.37
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	92.6
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	92.02
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	91.83
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	91.21
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	90.19
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	90.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	89.75
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	88.03
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	86.74
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	86.21
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	80.94

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.6e-34  Score=282.36  Aligned_cols=251  Identities=20%  Similarity=0.120  Sum_probs=191.7

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC------------------------
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS------------------------   56 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~------------------------   56 (431)
                      |.||+.|++++|++||++|+++|.++...|+||||+|+..|+.++|++|+++++..                        
T Consensus        30 ~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (337)
T 4g8k_A           30 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLK  109 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhH
Confidence            57999999999999999999999988757999999999999999999999877642                        


Q ss_pred             ------------CCCCcchhhHhhhcCChhhHHhhhhhhhhh-------hhhcccCCCCchHHHHHHHcCCHHHHHHHHH
Q 014068           57 ------------VPFEVMNTQIEGDRGDGSSVKSKCDQSALS-------KFVNKAADGGITALHMAALNGYFDCVQLLLD  117 (431)
Q Consensus        57 ------------~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-------~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~  117 (431)
                                  +..+.++++.++..+....+..++..+...       ...+..+..|.||||+|+..|+.++|++||+
T Consensus       110 ~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~  189 (337)
T 4g8k_A          110 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  189 (337)
T ss_dssp             HHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHh
Confidence                        345667888888888888887776554321       1233455678899999999999999999995


Q ss_pred             -CCCCCCcccccCCCccccCCCCCcHHHHHHhcCC----HHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          118 -LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       118 -~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~----~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                       .|++++..+..          |.|+||+++..++    .+++++|+++|+++|.+|..|+||||+|+..|+.+++++|.
T Consensus       190 ~~gad~n~~d~~----------g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          190 EMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             HSCCCTTCCCTT----------SCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCcCccCCC----------CCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence             68999988866          8899988776443    45889999999999999999999999999999999877766


Q ss_pred             C--CCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCC-CCchhhhhhccccchhccCCChHHHHHHHHHhhhcC
Q 014068          193 P--SSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSD-DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTN  269 (431)
Q Consensus       193 ~--~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~-~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~  269 (431)
                      .  +.+++..+..+        .|+|++|.+.|..+++..... +-+   +-...++..|+.. ||..++++|++.||++
T Consensus       260 ~~~~~~vn~~d~~G--------~TpL~~A~~~g~~~iv~~Ll~~GAd---~n~~~~L~~A~~~-~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          260 EQEHIEINDTDSDG--------KTALLLAVELKLKKIAELLCKRGAS---TDCGDLVMTARRN-YDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             TSTTCCTTCBCTTS--------CBHHHHHHHTTCHHHHHHHHTTSCS---STTCCHHHHHHHT-TCHHHHHHHHHTTCCC
T ss_pred             HhcCCcccCcCCCC--------CCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCHHHHHHHc-CCHHHHHHHHHCcCCC
Confidence            5  45555544333        388999999998776653211 111   1112466777777 8888999999999999


Q ss_pred             CCCC
Q 014068          270 NIPS  273 (431)
Q Consensus       270 n~~~  273 (431)
                      ++.+
T Consensus       328 d~~~  331 (337)
T 4g8k_A          328 DFHP  331 (337)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8644

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.9e-34  Score=255.71  Aligned_cols=153  Identities=35%  Similarity=0.482  Sum_probs=141.8

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |.||+.|+.++|++||++|+|+|.+|. .|+||||+|+..|+.+++++|++.+++                         
T Consensus         9 ~~Aa~~G~~~~v~~Ll~~Gadvn~~d~-~g~t~l~~a~~~~~~~~~~~ll~~gad-------------------------   62 (169)
T 4gpm_A            9 IEAAENGNKDRVKDLIENGADVNASDS-DGRTPLHHAAENGHKEVVKLLISKGAD-------------------------   62 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHhcccc-------------------------
Confidence            468999999999999999999999998 999999999999999999999988765                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.+|..|.||||+|+..|+.++|++||++|+++|.+|..          |+||||+|+..|+.++|++|++
T Consensus        63 --------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~----------G~TpLh~A~~~g~~~~v~~Ll~  124 (169)
T 4gpm_A           63 --------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD----------GRTPLHHAAENGHKEVVKLLIS  124 (169)
T ss_dssp             --------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence                    7889999999999999999999999999999999999976          9999999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC-CCCC
Q 014068          161 RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDA  197 (431)
Q Consensus       161 ~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~-~a~~  197 (431)
                      +|++++.+|.+|+||||+|+.+|+.+++++|++ |+++
T Consensus       125 ~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          125 KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            999999999999999999999999999876654 5554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.1e-33  Score=279.87  Aligned_cols=210  Identities=19%  Similarity=0.106  Sum_probs=184.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCC-CCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP-FEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~-~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+||..|+.++|++|+++|++++..|. .|.||||+|+..|+.++|++|++.+...+. .+.+++++++..++.+.+..+
T Consensus        25 ~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~L  103 (364)
T 3ljn_A           25 HVAARKGQTDEVRRLIETGVSPTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVAL  103 (364)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHH
Confidence            679999999999999999999999998 999999999999999999999998886665 789999999999999999988


Q ss_pred             hhhhhh-hhhh-----------------cccCCCCchHHHHHHHcC--CHHHHHHHHHCCCCCCcccccCCCccccCCCC
Q 014068           80 CDQSAL-SKFV-----------------NKAADGGITALHMAALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG  139 (431)
Q Consensus        80 ~~~~~~-~~~i-----------------n~~d~~G~TpLh~Aa~~g--~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G  139 (431)
                      +..... ...+                 +.+|..|.||||+|+..|  +.++|++|+++|++++..+..          |
T Consensus       104 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~----------g  173 (364)
T 3ljn_A          104 VEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA----------D  173 (364)
T ss_dssp             HHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT----------S
T ss_pred             HHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC----------C
Confidence            876221 1122                 337889999999999999  999999999999999999976          9


Q ss_pred             CcHHHHHHhcCCHHHHHHHHHCCCC-----CcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhh
Q 014068          140 STPLHFAACGGNLKCCQVLLSRGAS-----RMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLL  213 (431)
Q Consensus       140 ~TpLh~Aa~~g~~eivklLL~~GAd-----in~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~  213 (431)
                      .||||+|+..|+.++|++|+++|++     ++..|..|+||||+|+..|+.+++++|+ .+++++..+..+.        
T Consensus       174 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~--------  245 (364)
T 3ljn_A          174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT--------  245 (364)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSC--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC--------
Confidence            9999999999999999999999999     9999999999999999999999976655 5677766554433        


Q ss_pred             hHHHHHHHcCCccccc
Q 014068          214 SVLNVARECGLLSSTT  229 (431)
Q Consensus       214 t~l~~A~~~G~~~~~~  229 (431)
                      |+|++|...|..+++.
T Consensus       246 tpL~~A~~~g~~~~v~  261 (364)
T 3ljn_A          246 VPLYLSVRAAMVLLTK  261 (364)
T ss_dssp             CHHHHHHHTCCHHHHH
T ss_pred             CHHHHHHHhChHHHHH
Confidence            8899999998776664

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.5e-32  Score=258.88  Aligned_cols=209  Identities=20%  Similarity=0.148  Sum_probs=162.2

Q ss_pred             CEeeccC-------------CHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchh
Q 014068            1 MQACRYG-------------HWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNT   64 (431)
Q Consensus         1 H~Aa~~G-------------~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l   64 (431)
                      |+|+..|             +.++|++|+++|++++...+..|+||||+|+..|+.++|++|++.++..   +..+.+++
T Consensus        15 ~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L   94 (253)
T 1yyh_A           15 MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPL   94 (253)
T ss_dssp             -------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            6788877             9999999999999997764349999999999999999999999987754   45678999


Q ss_pred             hHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHH
Q 014068           65 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH  144 (431)
Q Consensus        65 ~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh  144 (431)
                      ++++..+..+.+..++.....  .++.++..|.||||+|+..|+.+++++|+++|++++..+..          |.||||
T Consensus        95 ~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~  162 (253)
T 1yyh_A           95 HAAVSADAQGVFQILIRNRAT--DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL----------GKSALH  162 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTS--CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTT----------SCBHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC--CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCC----------CCCHHH
Confidence            999999999999888776432  37888999999999999999999999999999999999976          999999


Q ss_pred             HHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcC
Q 014068          145 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECG  223 (431)
Q Consensus       145 ~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G  223 (431)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++| ..+++++..+..+.        +++++|.+.|
T Consensus       163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~--------tpl~~A~~~g  234 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR--------LPRDIAQERM  234 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC--------CHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCC--------CHHHHHHHcC
Confidence            99999999999999999999999999999999999999999997655 45677766554433        8899999988


Q ss_pred             Cccccc
Q 014068          224 LLSSTT  229 (431)
Q Consensus       224 ~~~~~~  229 (431)
                      +.+++.
T Consensus       235 ~~~i~~  240 (253)
T 1yyh_A          235 HHDIVR  240 (253)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            877765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.6e-32  Score=256.25  Aligned_cols=261  Identities=20%  Similarity=0.091  Sum_probs=211.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+...|+||||+|+..|+.+++++|++.+..   .+..+.+++++++..+..+.++
T Consensus        10 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (285)
T 1wdy_A           10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK   89 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            5789999999999999999999988545899999999999999999999998765   3466889999999999999999


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++..+   ..++.+|..|.||||+|+..|+.+++++|+++|++++..+............|.||||+|+..|+.+++++
T Consensus        90 ~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  166 (285)
T 1wdy_A           90 LFLSKG---ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  166 (285)
T ss_dssp             HHHHTT---CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHcC---CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHH
Confidence            888764   34788899999999999999999999999999999987732100000001249999999999999999999


Q ss_pred             HHHC-CCCCcccCCCCCcHHHHHHHhCc----HHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccC
Q 014068          158 LLSR-GASRMSLNCNGWLPLDVARMWGR----HWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSS  231 (431)
Q Consensus       158 LL~~-GAdin~~d~~G~TpLh~Aa~~g~----~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~  231 (431)
                      |+++ |++++..|..|+||||+|+..++    .+++++| ..+++++..+..+.        |++++|...|..+++...
T Consensus       167 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~--------t~L~~A~~~~~~~~v~~L  238 (285)
T 1wdy_A          167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK--------TPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             HHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC--------CHHHHHHHTTCHHHHHHH
T ss_pred             HHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC--------cHHHHHHHcCCHHHHHHH
Confidence            9998 99999999999999999999998    7886655 55666666544433        789999998876654421


Q ss_pred             C----CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCC
Q 014068          232 S----DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPS  273 (431)
Q Consensus       232 ~----~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~  273 (431)
                      .    ...........++...|+.. ||..+++.|++.|++++..+
T Consensus       239 l~~~g~~~~~~~~~g~t~l~~A~~~-~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          239 LEQEHIEINDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHSSSCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSSCSCCSS
T ss_pred             HhccCCCccccCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCCccc
Confidence            1    11111122335778888888 99999999999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3.4e-32  Score=259.69  Aligned_cols=205  Identities=21%  Similarity=0.151  Sum_probs=169.7

Q ss_pred             CEeeccCCHHHHHHHHHcCCC---CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChh
Q 014068            1 MQACRYGHWEVVQTLLLFRCN---VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGS   74 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gad---i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~   74 (431)
                      |+||..|+.++|++|+++|++   ++..+. .|+||||+|+..|+.+++++|+++++..   +..+.+++++++..+...
T Consensus        14 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~   92 (282)
T 1oy3_D           14 HLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT   92 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcc
Confidence            689999999999999999998   778887 9999999999999999999999987754   456889999999999999


Q ss_pred             hHHhhhhhhhh--------------------------------------------hhhhcccCCCCchHHHHHHHcCCHH
Q 014068           75 SVKSKCDQSAL--------------------------------------------SKFVNKAADGGITALHMAALNGYFD  110 (431)
Q Consensus        75 ~~~~~~~~~~~--------------------------------------------~~~in~~d~~G~TpLh~Aa~~g~~e  110 (431)
                      .+..++.....                                            ...++.++..|.||||+|+..|+.+
T Consensus        93 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~  172 (282)
T 1oy3_D           93 CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE  172 (282)
T ss_dssp             HHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHH
Confidence            99888764321                                            2347788999999999999999999


Q ss_pred             HHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHH
Q 014068          111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL  190 (431)
Q Consensus       111 ~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~L  190 (431)
                      +|++|+++|++++..+..         .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus       173 ~v~~Ll~~g~~~~~~~~~---------~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~  243 (282)
T 1oy3_D          173 MVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (282)
T ss_dssp             HHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCC---------CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence            999999999999998743         39999999999999999999999999999999999999999999999999765


Q ss_pred             h-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcC
Q 014068          191 L-APSSDAVMPRFHPSNYLSLPLLSVLNVARECG  223 (431)
Q Consensus       191 L-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G  223 (431)
                      | ..+++++.....+.        |+++++....
T Consensus       244 Ll~~ga~~~~~~~~g~--------tpl~~a~~~~  269 (282)
T 1oy3_D          244 LRAHGAPEPEDGGDKL--------SPCSSSGSDS  269 (282)
T ss_dssp             HHHTTCCCCCCC----------------------
T ss_pred             HHHcCCCcCcCCCccc--------ccccccCCcc
Confidence            5 56777766544433        6677766644

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=1.4e-31  Score=249.77  Aligned_cols=203  Identities=22%  Similarity=0.214  Sum_probs=180.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..   .+..+.++++.++..+..+.+.
T Consensus        16 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   94 (237)
T 3b7b_A           16 HAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQ   94 (237)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHcCCCcCccCC-CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Confidence            579999999999999999999999997 999999999999999999999998764   4566789999999999999999


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++....  ..++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++
T Consensus        95 ~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~  162 (237)
T 3b7b_A           95 YLLSNGQ--MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE----------ENICLHWAAFSGCVDIAEI  162 (237)
T ss_dssp             HHHTTTC--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHCCHHHHHH
T ss_pred             HHHhCCC--CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCC----------CCCHHHHHHHCCCHHHHHH
Confidence            8887652  247888999999999999999999999999999999998876          9999999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCC
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGL  224 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~  224 (431)
                      |+++|++++.+|..|+||||+|+..|+.+++++| ..+++++..+..+.        |++++|...|.
T Consensus       163 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~--------t~l~~A~~~~~  222 (237)
T 3b7b_A          163 LLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE--------TPLQCASLNSQ  222 (237)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC--------CHHHHSCTTCH
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCC--------CHHHHHHHHHH
Confidence            9999999999999999999999999999997655 55677666554433        77888776654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.98  E-value=6.9e-32  Score=275.12  Aligned_cols=280  Identities=23%  Similarity=0.220  Sum_probs=182.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+||..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++..   .+..+.++++.|+..++.+.++
T Consensus        19 ~~Aa~~g~~~~v~~Ll~~g~~~~~~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~   97 (437)
T 1n11_A           19 HVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK   97 (437)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCSSS-CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            568888888888888888888888876 888888888888888888888887664   3456778888888888888888


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++..+.   .++..+..|.||||+|+..|+.++|++|++++++++..+..          |.||||+|+..|+.+++++
T Consensus        98 ~Ll~~ga---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~  164 (437)
T 1n11_A           98 LLLENNA---NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK----------GFTPLHVAAKYGKVRVAEL  164 (437)
T ss_dssp             HHHHHTC---CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHH
T ss_pred             HHHhCCC---CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC----------CCCHHHHHHHcCCHHHHHH
Confidence            7776542   46677777888888888888888888888888877776654          7777777777777777777


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC-CCCCCCCCCCCCCC-------------------------Cchh
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNY-------------------------LSLP  211 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~-~a~~~~~~~~~~~~-------------------------~~~~  211 (431)
                      |+++|++++..+..|.||||+|+..|+.+++++|.. +++++.....+...                         ....
T Consensus       165 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  244 (437)
T 1n11_A          165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  244 (437)
T ss_dssp             HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            777777777777777777777777777777655543 33333322221100                         0001


Q ss_pred             hhhHHHHHHHcCCccccccCC---CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccc
Q 014068          212 LLSVLNVARECGLLSSTTSSS---DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  288 (431)
Q Consensus       212 l~t~l~~A~~~G~~~~~~a~~---~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr  288 (431)
                      ..+++++|...|..+++....   .+.........++...|+.. ||..+++.|++.|++.+..+..+.+|.+.++-.-+
T Consensus       245 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  323 (437)
T 1n11_A          245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN  323 (437)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCc
Confidence            123444444444433332100   00000111112345555555 66666777777777666666666666555555545


Q ss_pred             cccccce
Q 014068          289 HGIVSFT  295 (431)
Q Consensus       289 ~~I~~~~  295 (431)
                      -.|+++.
T Consensus       324 ~~~v~~L  330 (437)
T 1n11_A          324 IKLVKFL  330 (437)
T ss_dssp             SHHHHHH
T ss_pred             HHHHHHH
Confidence            5555553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=8.3e-32  Score=274.54  Aligned_cols=282  Identities=23%  Similarity=0.213  Sum_probs=210.7

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.++|++|+++++.   .+..+.+++++++..+..+.+.
T Consensus        52 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~  130 (437)
T 1n11_A           52 HMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL  130 (437)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Confidence            578889999999999999999988887 899999999999999999999987764   3456778888888888888887


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccC---------------------
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI---------------------  136 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~---------------------  136 (431)
                      .++....   .++..+..|.||||+|+..|+.+++++|+++|++++..+..+.++++.+                     
T Consensus       131 ~Ll~~~~---~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  207 (437)
T 1n11_A          131 ALLEKEA---SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS  207 (437)
T ss_dssp             HHHHTTC---CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC
T ss_pred             HHHhCCC---CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            7765532   2455566677777777777777777777777777766665433322211                     


Q ss_pred             --CCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhh
Q 014068          137 --GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLL  213 (431)
Q Consensus       137 --~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~  213 (431)
                        ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|. .+++.+.....+        .
T Consensus       208 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--------~  279 (437)
T 1n11_A          208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG--------L  279 (437)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTC--------C
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCC--------C
Confidence              24788888888888888999999988888888889999999999999988876654 455555544332        3


Q ss_pred             hHHHHHHHcCCccccccC---CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccc
Q 014068          214 SVLNVARECGLLSSTTSS---SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHG  290 (431)
Q Consensus       214 t~l~~A~~~G~~~~~~a~---~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~  290 (431)
                      +++++|...|..+++...   ....+.....-.+++..|+.. |+..++++|++.|++++..+..+.+|.+.++-.-+.+
T Consensus       280 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~  358 (437)
T 1n11_A          280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY-GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD  358 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHS-SCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHH
Confidence            789999999987665421   111111112234677888887 8989999999999999998888888887777766667


Q ss_pred             cccce
Q 014068          291 IVSFT  295 (431)
Q Consensus       291 I~~~~  295 (431)
                      |+++.
T Consensus       359 iv~~L  363 (437)
T 1n11_A          359 IVTLL  363 (437)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1.5e-31  Score=249.68  Aligned_cols=211  Identities=23%  Similarity=0.241  Sum_probs=178.8

Q ss_pred             CEeeccCCHHHHHHHHH----cCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHWEVVQTLLL----FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~----~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~   73 (431)
                      |+||..|+.++|++|++    .|++++..+. .|.||||+|+..|+.+++++|++.+...   +..+.++++.++..+..
T Consensus        14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   92 (241)
T 1k1a_A           14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP   92 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCCCcccc-cCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            67999999999999997    7999999997 9999999999999999999999987653   55678999999999999


Q ss_pred             hhHHhhhhhhhh-hhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCH
Q 014068           74 SSVKSKCDQSAL-SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  152 (431)
Q Consensus        74 ~~~~~~~~~~~~-~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~  152 (431)
                      ..+..++..... ...++..+..|.||||+|+..|+.+++++|+++|++++..+..         .|.||||+|+..|+.
T Consensus        93 ~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~---------~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A           93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK---------SGRSPLIHAVENNSL  163 (241)
T ss_dssp             HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc---------CCCcHHHHHHHcCCH
Confidence            999888776532 1247888999999999999999999999999999999998832         299999999999999


Q ss_pred             HHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccc
Q 014068          153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTT  229 (431)
Q Consensus       153 eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~  229 (431)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++| ..+++++..+..+.        |++++|...|..+++.
T Consensus       164 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~--------tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND--------TPLMVARSRRVIDILR  233 (241)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC--------CTTTTCSSHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCC--------CHHHHHHhcCcHHHHh
Confidence            999999999999999999999999999999999997655 45666655543333        4555555555544443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1.6e-31  Score=247.71  Aligned_cols=193  Identities=25%  Similarity=0.260  Sum_probs=171.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcc-cCCCCCchHHHHHHHhCCHHHHHHHHhcCCC------CCCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTR-ADYLSGRTALHFAAVNGHVRCIRLVVADFVP------SVPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~-~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~------~~~~~~~~l~~a~~~~~~   73 (431)
                      |+|+..|+.++|++|++.|+++.. .+. .|.||||+|+..|+.+++++|++.+..      .+..+.++++.++..+..
T Consensus         7 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~   85 (228)
T 2dzn_A            7 HQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL   85 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCH
T ss_pred             HHHHHhCCHHHHHHHHhcCccccccCCC-CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCH
Confidence            679999999999999999988766 555 999999999999999999999998843      456788999999999999


Q ss_pred             hhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHH
Q 014068           74 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK  153 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~e  153 (431)
                      +.+..++..+. ...++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+
T Consensus        86 ~~~~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~  154 (228)
T 2dzn_A           86 EVVKSLYDRPL-KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF----------NQIPLHRAASVGSLK  154 (228)
T ss_dssp             HHHHHHHSSSS-CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHH
T ss_pred             HHHHHHHhCCC-CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCC----------CCCHHHHHHHcCCHH
Confidence            99988877641 2347888999999999999999999999999999999999876          999999999999999


Q ss_pred             HHHHHHHCC-CCCcccCCCCCcHHHHHHHhCcHHHHHHhc--CCCCCCCCCCCCC
Q 014068          154 CCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLA--PSSDAVMPRFHPS  205 (431)
Q Consensus       154 ivklLL~~G-Adin~~d~~G~TpLh~Aa~~g~~~v~~LL~--~~a~~~~~~~~~~  205 (431)
                      ++++|+++| ++++.+|..|+||||+|+..|+.+++++|.  .+++++..+..+.
T Consensus       155 ~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~  209 (228)
T 2dzn_A          155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGA  209 (228)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSC
T ss_pred             HHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCC
Confidence            999999999 999999999999999999999999987776  4777776654433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=5.2e-31  Score=249.77  Aligned_cols=182  Identities=24%  Similarity=0.228  Sum_probs=167.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC----CCCCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV----PSVPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~----~~~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.+.    ..+..+.+++++++..+....+
T Consensus        62 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  140 (253)
T 1yyh_A           62 HLAARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML  140 (253)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHH
Confidence            679999999999999999999999997 99999999999999999999998765    3456788999999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      ..++..+   ..++.+|..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..|+.++++
T Consensus       141 ~~Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpL~~A~~~~~~~~v~  207 (253)
T 1yyh_A          141 EDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAK  207 (253)
T ss_dssp             HHHHHTT---CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHCCCHHHHH
Confidence            9888754   358889999999999999999999999999999999999876          999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  196 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~  196 (431)
                      +|+++|++++.+|..|+||||+|+..|+.+|+.+|.....
T Consensus       208 ~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             HHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999876543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=9.5e-31  Score=241.87  Aligned_cols=201  Identities=19%  Similarity=0.144  Sum_probs=128.3

Q ss_pred             CCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHHhhhhhh
Q 014068            7 GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQS   83 (431)
Q Consensus         7 G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~~~~~~~   83 (431)
                      |+.++|++|+++|++++...+..|.||||+|+..|+.+++++|++++...   +..+.++++.++..+..+.++.++...
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            56666777777777766553236777777777777777777777655432   344566777777777766666665543


Q ss_pred             hhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCC
Q 014068           84 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA  163 (431)
Q Consensus        84 ~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GA  163 (431)
                      .  ..++.++..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|+
T Consensus        82 ~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~  149 (223)
T 2f8y_A           82 A--TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGA  149 (223)
T ss_dssp             T--SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             C--CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCC----------CCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            2  125566666777777777777777777777777777766654          7777777777777777777777777


Q ss_pred             CCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccc
Q 014068          164 SRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS  227 (431)
Q Consensus       164 din~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~  227 (431)
                      +++.+|..|+||||+|+..|+.+++++| ..+++++..+..+.        +++++|.+.|..++
T Consensus       150 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~--------t~l~~A~~~~~~~i  206 (223)
T 2f8y_A          150 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR--------LPRDIAQERMHHDI  206 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC--------CHHHHHHHTTCHHH
T ss_pred             CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCC--------CHHHHHHHhcchHH
Confidence            7777777777777777777777665444 34455544433322        56666666665444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.1e-30  Score=241.39  Aligned_cols=183  Identities=24%  Similarity=0.220  Sum_probs=168.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC----CCCCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV----PSVPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~----~~~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++++.    ..+..+.++++.++..+..+.+
T Consensus        30 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  108 (223)
T 2f8y_A           30 HLAARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML  108 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHH
Confidence            679999999999999999999999997 99999999999999999999998765    3456788999999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      +.++...   ..++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++++
T Consensus       109 ~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~  175 (223)
T 2f8y_A          109 EDLINSH---ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAK  175 (223)
T ss_dssp             HHHHHTT---CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcC---CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CcCHHHHHHHcCCHHHHH
Confidence            8887753   357889999999999999999999999999999999999876          999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  197 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~  197 (431)
                      +|+++|++++.+|..|.||||+|+..++.+++++|.+....
T Consensus       176 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          176 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            99999999999999999999999999999999888776544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=4.3e-30  Score=252.12  Aligned_cols=240  Identities=22%  Similarity=0.153  Sum_probs=199.5

Q ss_pred             CEeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |.||..|+.+.|+.|+.. +++++..|. .|.||||+|+..|+.++|++|++++...   +..+.+++++|+..++.+.+
T Consensus        29 ~~A~~~g~~~~v~~ll~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv  107 (351)
T 3utm_A           29 LEAARSGNEEKLMALLTPLNVNCHASDG-RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVT  107 (351)
T ss_dssp             HHHHHHTCHHHHHHHCCTTTTTCCCSST-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHH
Confidence            568999999999999875 899999997 9999999999999999999999987654   56688999999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcccc---------------------
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL---------------------  135 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~---------------------  135 (431)
                      +.++..+   ..++..|..|.||||+|+..|+.+++++|+++|++++..+....+.++.                     
T Consensus       108 ~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~  184 (351)
T 3utm_A          108 ELLLKHG---ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ  184 (351)
T ss_dssp             HHHHHTT---CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHH
Confidence            9988764   3578889999999999999999999999999999998877554333221                     


Q ss_pred             -----------------------CCCCCcHHHHHHhc---CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 014068          136 -----------------------IGAGSTPLHFAACG---GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  189 (431)
Q Consensus       136 -----------------------~~~G~TpLh~Aa~~---g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~  189 (431)
                                             ...|.||||+|+..   ++.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus       185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~  264 (351)
T 3utm_A          185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME  264 (351)
T ss_dssp             HHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHH
Confidence                                   14589999999999   5689999999999999999999999999999999999976


Q ss_pred             Hhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhc
Q 014068          190 LLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCST  268 (431)
Q Consensus       190 LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~  268 (431)
                      +|. .+++++..+..+.        |++++|...                               ||..++++|++.|++
T Consensus       265 ~Ll~~ga~~n~~d~~g~--------t~L~~A~~~-------------------------------~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          265 VLHKHGAKMNALDSLGQ--------TALHRAALA-------------------------------GHLQTCRLLLSYGSD  305 (351)
T ss_dssp             HHHHTTCCTTCCCTTSC--------CHHHHHHHH-------------------------------TCHHHHHHHHHTTCC
T ss_pred             HHHHCCCCCCCcCCCCC--------CHHHHHHHc-------------------------------CcHHHHHHHHHcCCC
Confidence            665 4566655543322        667777654                               456678889999998


Q ss_pred             CCCCCCCCCCCCCCC
Q 014068          269 NNIPSEMVGPPGSIP  283 (431)
Q Consensus       269 ~n~~~~~~~~p~~~~  283 (431)
                      ++..+..+.+|....
T Consensus       306 ~~~~~~~g~tal~~a  320 (351)
T 3utm_A          306 PSIISLQGFTAAQMG  320 (351)
T ss_dssp             TTCCCTTSCCHHHHS
T ss_pred             CCCcCCCCCChhhhh
Confidence            888877766665444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=249.84  Aligned_cols=176  Identities=22%  Similarity=0.200  Sum_probs=121.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+||..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.++.   .+..+.++++.++..+....+.
T Consensus        64 ~~Aa~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~  142 (285)
T 3d9h_A           64 HEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVN  142 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCEECT-TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHH
Confidence            678999999999999999999999987 899999999999999999999987664   2344556666666666666665


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++..+.   .++. +..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++
T Consensus       143 ~Ll~~g~---~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~  208 (285)
T 3d9h_A          143 LLLQHGA---SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISH----------LGTPLYLACENQQRACVKK  208 (285)
T ss_dssp             HHHHTTC---CSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTT----------TBCHHHHHHHTTCHHHHHH
T ss_pred             HHHHCCC---CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHH
Confidence            5554432   1222 233666666666666666666666666666666544          6666666666666666666


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                      |+++|++++. |..|+||||+|+..|+.+++++|.
T Consensus       209 Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll  242 (285)
T 3d9h_A          209 LLESGADVNQ-GKGQDSPLHAVVRTASEELACLLM  242 (285)
T ss_dssp             HHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6666666663 566666666666666666654443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.7e-30  Score=231.24  Aligned_cols=150  Identities=34%  Similarity=0.459  Sum_probs=142.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+||..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++..                         
T Consensus        19 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------   72 (169)
T 2y1l_E           19 LEAARAGRDDEVRILMANGADVNAEDA-SGWTPLHLAAFNGHLEIVEVLLKNGAD-------------------------   72 (169)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            478999999999999999999999997 999999999999999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|++
T Consensus        73 --------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~  134 (169)
T 2y1l_E           73 --------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME----------GHTPLHLAAMFGHLEIVEVLLK  134 (169)
T ss_dssp             --------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence                    7788889999999999999999999999999999999876          9999999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          161 RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       161 ~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      +|++++.+|..|.||||+|+..|+.+++++|.+.
T Consensus       135 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          135 NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            9999999999999999999999999999888753

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.1e-30  Score=241.32  Aligned_cols=181  Identities=23%  Similarity=0.236  Sum_probs=162.8

Q ss_pred             CEeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC--------CCCCCcchhhHhhhcC
Q 014068            1 MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP--------SVPFEVMNTQIEGDRG   71 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~--------~~~~~~~~l~~a~~~~   71 (431)
                      |+|+..|+.++|++|++. |++++..|. .|+||||+|+..|+.+++++|++.+..        .+..+.+++++|+..+
T Consensus         8 ~~A~~~g~~~~v~~Ll~~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~   86 (232)
T 2rfa_A            8 LLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQ   86 (232)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCcccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcC
Confidence            679999999999999998 999999997 999999999999999999999987654        3457899999999999


Q ss_pred             ChhhHHhhhhhhhhhhhhcccC-------------CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCC
Q 014068           72 DGSSVKSKCDQSALSKFVNKAA-------------DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA  138 (431)
Q Consensus        72 ~~~~~~~~~~~~~~~~~in~~d-------------~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~  138 (431)
                      ..+.++.++..+.   .++.++             ..|.||||+|+..|+.++|++|+++|++++.+|..          
T Consensus        87 ~~~~v~~Ll~~g~---~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------  153 (232)
T 2rfa_A           87 NVNLVRALLARGA---SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL----------  153 (232)
T ss_dssp             CHHHHHHHHHTTC---CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------
T ss_pred             CHHHHHHHHhCCC---CCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------
Confidence            9999998887643   344444             37999999999999999999999999999999976          


Q ss_pred             CCcHHHHHHhcCCHHHH----HHHHHCCCCC------cccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          139 GSTPLHFAACGGNLKCC----QVLLSRGASR------MSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       139 G~TpLh~Aa~~g~~eiv----klLL~~GAdi------n~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      |+||||+|+..|+.+++    ++|+++|+++      +.+|..|+||||+|+..|+.+++++|++..
T Consensus       154 g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999988    9999999998      588999999999999999999988776543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=8.1e-31  Score=263.24  Aligned_cols=216  Identities=17%  Similarity=0.105  Sum_probs=180.6

Q ss_pred             CEeeccCCHHHHHHHH--------HcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhh
Q 014068            1 MQACRYGHWEVVQTLL--------LFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGD   69 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL--------~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~   69 (431)
                      |+||..|+.++|++|+        ++|++++..|. .|.||||+|+..|+.++|++|+++++.   .+..+.+++++++.
T Consensus       130 h~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~  208 (373)
T 2fo1_E          130 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA  208 (373)
T ss_dssp             HHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHH
Confidence            6799999998888776        78999999997 999999999999999999999998764   34668899999999


Q ss_pred             cCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcC---CHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHH
Q 014068           70 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  146 (431)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g---~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~A  146 (431)
                      .+....+..++........++..|..|.||||+|+..|   +.+++++|+++|++++..+.....  .....|.||||+|
T Consensus       209 ~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~~d~~g~t~Lh~A  286 (373)
T 2fo1_E          209 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD--SEKYKGRTALHYA  286 (373)
T ss_dssp             TTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS--SSSCCCCCTHHHH
T ss_pred             CCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccC--cccccCCCHHHHH
Confidence            99999999998877655678999999999999999998   899999999999999873210000  0002499999999


Q ss_pred             HhcCCHHHHHHHHHCC-CCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCC
Q 014068          147 ACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGL  224 (431)
Q Consensus       147 a~~g~~eivklLL~~G-Adin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~  224 (431)
                      +..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+++++|+ .+++++..+..+.        |++++|...|+
T Consensus       287 ~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~--------t~l~~A~~~g~  358 (373)
T 2fo1_E          287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH--------TARQLAQANNH  358 (373)
T ss_dssp             HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSC--------CHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCC--------CHHHHHHHcCC
Confidence            9999999999999885 999999999999999999999999976654 5666665544333        77888877655


Q ss_pred             ccc
Q 014068          225 LSS  227 (431)
Q Consensus       225 ~~~  227 (431)
                      .++
T Consensus       359 ~~i  361 (373)
T 2fo1_E          359 HNI  361 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=5.8e-30  Score=243.57  Aligned_cols=207  Identities=23%  Similarity=0.181  Sum_probs=181.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++...   +..+.++++.++..+....++
T Consensus        44 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  122 (285)
T 1wdy_A           44 HNAVQMSREDIVELLLRHGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK  122 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHH
Confidence            679999999999999999999999997 9999999999999999999999987654   456789999999999999998


Q ss_pred             hhhhhhhhhhhhccc----------CCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCcccccCCCccccCCCCCcHHHHH
Q 014068           78 SKCDQSALSKFVNKA----------ADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFA  146 (431)
Q Consensus        78 ~~~~~~~~~~~in~~----------d~~G~TpLh~Aa~~g~~e~VklLL~~-Gadvn~~d~~~~~~~~~~~~G~TpLh~A  146 (431)
                      .++..+..   ++..          +..|.||||+|+..|+.+++++|++. |++++..+..          |.||||+|
T Consensus       123 ~Ll~~g~~---~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~----------g~t~l~~a  189 (285)
T 1wdy_A          123 FLYKRGAN---VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM----------GRNALIHA  189 (285)
T ss_dssp             HHHHTTCC---TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTT----------SCCHHHHH
T ss_pred             HHHHhCCC---cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC----------CCCHHHHH
Confidence            88776432   3333          77899999999999999999999998 9999999876          99999999


Q ss_pred             HhcCC----HHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC--CCCCCCCCCCCCCCCchhhhhHHHHHH
Q 014068          147 ACGGN----LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP--SSDAVMPRFHPSNYLSLPLLSVLNVAR  220 (431)
Q Consensus       147 a~~g~----~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~--~a~~~~~~~~~~~~~~~~l~t~l~~A~  220 (431)
                      +..++    .+++++|+++|++++.+|..|+||||+|+..|+.+++++|..  +.+++..+..+.        |++++|.
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~--------t~l~~A~  261 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK--------TALLLAV  261 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC--------CHHHHHH
T ss_pred             HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCC--------cHHHHHH
Confidence            99999    999999999999999999999999999999999999877764  566555544333        8899999


Q ss_pred             HcCCccccc
Q 014068          221 ECGLLSSTT  229 (431)
Q Consensus       221 ~~G~~~~~~  229 (431)
                      +.|..+++.
T Consensus       262 ~~~~~~i~~  270 (285)
T 1wdy_A          262 ELKLKKIAE  270 (285)
T ss_dssp             HTTCHHHHH
T ss_pred             HcCcHHHHH
Confidence            988765543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.6e-30  Score=234.11  Aligned_cols=181  Identities=21%  Similarity=0.181  Sum_probs=162.7

Q ss_pred             CEeeccCCHHHHHHHHHcCC-CCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRC-NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~ga-di~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..|+.+.|++|++.+. +++..+. .|.||||+|+..|+.+++++|++.++..   +..+.++++.++..+..+.+
T Consensus        10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~   88 (201)
T 3hra_A           10 LEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEIL   88 (201)
T ss_dssp             HHHHHTTCHHHHHHHHTCTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHhccHHHHHHHHHcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            57899999999999999876 9999987 9999999999999999999999987754   45578999999999999998


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCcccccCCCccccCCCCCcHHHHHHhcCC----
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----  151 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~G-advn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~----  151 (431)
                      +.++....  ..++.++..|.||||+|+..|+.+++++|+++| ++++..+..          |.||||+|+..++    
T Consensus        89 ~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~----------g~t~L~~A~~~~~~~~~  156 (201)
T 3hra_A           89 AYMLKHAT--PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF----------GYTALIEAVGLREGNQL  156 (201)
T ss_dssp             HHHHHHSC--CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT----------SCCHHHHHHHSSCCSHH
T ss_pred             HHHHhccC--cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC----------CCCHHHHHHHhccchhh
Confidence            88875432  347888899999999999999999999999999 999998876          9999999999998    


Q ss_pred             -HHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          152 -LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       152 -~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                       .+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence             9999999999999999999999999999999999999888754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=2.2e-30  Score=240.63  Aligned_cols=186  Identities=27%  Similarity=0.279  Sum_probs=163.8

Q ss_pred             CEeeccCCHHHHHHHHHcCCC-CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRCN-VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gad-i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..|++++|++|++.+.. ++..+. .|.||||+|+..|+.+++++|++.+..   .+..+.+++++++..+..+.+
T Consensus        11 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   89 (231)
T 3aji_A           11 CNLAYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIV   89 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHHCGGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhchhhhhcCCC-CCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHH
Confidence            568999999999999998765 555665 999999999999999999999997764   345688999999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      +.++..+   ..++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++++
T Consensus        90 ~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~  156 (231)
T 3aji_A           90 KALLVKG---AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY----------DATAMHRAAAKGNLKMVH  156 (231)
T ss_dssp             HHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCCHHHHH
Confidence            8887654   347888999999999999999999999999999999998866          999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMP  200 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~  200 (431)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|. .+++++..
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  201 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE  201 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCC
Confidence            999999999999999999999999999999976665 45655544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=3.4e-30  Score=239.45  Aligned_cols=179  Identities=24%  Similarity=0.238  Sum_probs=166.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++++...   +..+.++++.++..+..+.+.
T Consensus        45 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~  123 (231)
T 3aji_A           45 HWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV  123 (231)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHhCCCCCCcCC-CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            579999999999999999999999997 9999999999999999999999987654   456789999999999999998


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++..+   ..++.++..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++
T Consensus       124 ~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~  190 (231)
T 3aji_A          124 MLLEGG---ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE----------GNTPLHLACDEERVEEAKF  190 (231)
T ss_dssp             HHHHTT---CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcC---CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCC----------CCCHHHHHHHCCCHHHHHH
Confidence            887654   347888999999999999999999999999999999999876          9999999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  193 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~  193 (431)
                      |+++|++++.+|..|+||||+|+..++.+++++|.+
T Consensus       191 Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          191 LVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            999999999999999999999999999999988864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=7.4e-30  Score=250.46  Aligned_cols=202  Identities=24%  Similarity=0.194  Sum_probs=172.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++++...   +..+.++++.++..+..+.++
T Consensus        63 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  141 (351)
T 3utm_A           63 HLAAGYNRVRIVQLLLQHGADVHAKDK-GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS  141 (351)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            679999999999999999999999997 9999999999999999999999987654   455789999999999999998


Q ss_pred             hhhhhhhhhhh---------------------------------------------------hcccCCCCchHHHHHHHc
Q 014068           78 SKCDQSALSKF---------------------------------------------------VNKAADGGITALHMAALN  106 (431)
Q Consensus        78 ~~~~~~~~~~~---------------------------------------------------in~~d~~G~TpLh~Aa~~  106 (431)
                      .++..+.-...                                                   ....+..|.||||+|+..
T Consensus       142 ~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~  221 (351)
T 3utm_A          142 LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVAS  221 (351)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHC
T ss_pred             HHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHH
Confidence            88765432111                                                   112456789999999999


Q ss_pred             ---CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhC
Q 014068          107 ---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  183 (431)
Q Consensus       107 ---g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g  183 (431)
                         +..+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus       222 ~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~  291 (351)
T 3utm_A          222 LHPKRKQVAELLLRKGANVNEKNKD----------FMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG  291 (351)
T ss_dssp             CSTTHHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hCccHHHHHHHHHHcCCCcCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence               5589999999999999999876          999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHH
Q 014068          184 RHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARE  221 (431)
Q Consensus       184 ~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~  221 (431)
                      +.+++++| ..+++++..+..+.        |++++|.+
T Consensus       292 ~~~~v~~Ll~~gad~~~~~~~g~--------tal~~a~~  322 (351)
T 3utm_A          292 HLQTCRLLLSYGSDPSIISLQGF--------TAAQMGNE  322 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSC--------CHHHHSCH
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCC--------ChhhhhhH
Confidence            99997655 55677776655444        56666543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=4.7e-30  Score=224.43  Aligned_cols=147  Identities=27%  Similarity=0.311  Sum_probs=138.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++ .+. .|.||||+|+..|+.+++++|++.+..                         
T Consensus         7 ~~A~~~g~~~~v~~Ll~~g~~~~-~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------   59 (153)
T 1awc_B            7 LEAARAGQDDEVRILMANGAPFT-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVS-------------------------   59 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCCC-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC-cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            56899999999999999999887 454 899999999999999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.++..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|++
T Consensus        60 --------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~  121 (153)
T 1awc_B           60 --------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWATEHNHQEVVELLIK  121 (153)
T ss_dssp             --------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence                    7788889999999999999999999999999999999876          9999999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          161 RGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       161 ~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                      +|++++.+|..|+||||+|+..|+.+++++|.
T Consensus       122 ~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          122 YGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            99999999999999999999999999999884

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=6.9e-30  Score=226.18  Aligned_cols=150  Identities=25%  Similarity=0.406  Sum_probs=141.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|++.|++++..+. .|.||||+|+..|+.+++++|++.+..                         
T Consensus         8 ~~A~~~g~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------   61 (167)
T 3v31_A            8 HQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQNGAD-------------------------   61 (167)
T ss_dssp             HHHHHTTCHHHHHHHHHHSSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCcCCCCC-CCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------------
Confidence            679999999999999999999999997 999999999999999999999987664                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|++
T Consensus        62 --------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~  123 (167)
T 3v31_A           62 --------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKMLLE  123 (167)
T ss_dssp             --------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence                    6778889999999999999999999999999999999876          9999999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          161 RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       161 ~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      +|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       124 ~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999999999999999999998888653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=6.4e-30  Score=245.93  Aligned_cols=155  Identities=29%  Similarity=0.306  Sum_probs=81.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCC--------CcccCCCCCchHHHHHHHhCCH-HHHHHHHhcCCCCCCCCcchhhHhhhcC
Q 014068            1 MQACRYGHWEVVQTLLLFRCN--------VTRADYLSGRTALHFAAVNGHV-RCIRLVVADFVPSVPFEVMNTQIEGDRG   71 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gad--------i~~~d~~~G~TpLh~Aa~~G~~-eiv~~LL~~~~~~~~~~~~~l~~a~~~~   71 (431)
                      |.||..|+.++|++||++|++        ++..+. .|.||||+|+..++. .++++|++.|++                
T Consensus        16 ~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~-~~~t~L~~a~~~~~~~~~v~~Ll~~Gad----------------   78 (269)
T 4b93_B           16 LRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADP-EFCHPLCQCPKCAPAQKRLAKVPASGLG----------------   78 (269)
T ss_dssp             HHHHHTTCHHHHHHHHTCC-----------------------------------------CCCC----------------
T ss_pred             HHHHHcCCHHHHHHHHHCCCcccccccccccccCc-cCCCHHHHHHHhCCHHHHHHHHHHCCCC----------------
Confidence            468999999999999999875        345555 799999999988776 488999988765                


Q ss_pred             ChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCC
Q 014068           72 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN  151 (431)
Q Consensus        72 ~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~  151 (431)
                                       +|.+|.+|.||||+|+..|+.++|++|++.|++++..+..          |.||||+|+..++
T Consensus        79 -----------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~----------g~t~l~~a~~~~~  131 (269)
T 4b93_B           79 -----------------VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD----------QAVPLHLACQQGH  131 (269)
T ss_dssp             -----------------TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTC
T ss_pred             -----------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCC----------CCCccccccccCh
Confidence                             5555666666666666666666666666666666655544          6666666666666


Q ss_pred             HHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCC
Q 014068          152 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVM  199 (431)
Q Consensus       152 ~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~  199 (431)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++| ..+++++.
T Consensus       132 ~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~  180 (269)
T 4b93_B          132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA  180 (269)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc
Confidence            6666666666666666666666666666666666554433 33444433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.96  E-value=3e-30  Score=240.77  Aligned_cols=181  Identities=24%  Similarity=0.212  Sum_probs=163.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC-------CCCCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV-------PSVPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~-------~~~~~~~~~l~~a~~~~~~   73 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+.       ..+..+.++++.++..+..
T Consensus        51 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  129 (241)
T 1k1a_A           51 HLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ  129 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH
Confidence            579999999999999999999999997 99999999999999999999998765       3456688999999999999


Q ss_pred             hhHHhhhhhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCH
Q 014068           74 SSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  152 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~  152 (431)
                      +.+..++..+   ..++..+ ..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.
T Consensus       130 ~~~~~Ll~~g---~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~  196 (241)
T 1k1a_A          130 ETVQLLLERG---ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLL  196 (241)
T ss_dssp             HHHHHHHHTT---CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCH
T ss_pred             HHHHHHHHcC---CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCH
Confidence            9998887764   3467777 78999999999999999999999999999999876          99999999999999


Q ss_pred             HHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          153 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       153 eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|....
T Consensus       197 ~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          197 PLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             HHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            9999999999999999999999999999999999998887643

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=3.4e-30  Score=247.90  Aligned_cols=170  Identities=24%  Similarity=0.222  Sum_probs=120.5

Q ss_pred             CEeeccCCH-HHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHW-EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~-evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..++. .++++|+++|+++|..|. +|+||||+|+..|+.++|++|++.++.   .+..+.++++.++..+....+
T Consensus        57 ~~a~~~~~~~~~v~~Ll~~Gadvn~~d~-~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~  135 (269)
T 4b93_B           57 CQCPKCAPAQKRLAKVPASGLGVNVTSQ-DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVV  135 (269)
T ss_dssp             ------------------CCCCTTCCCT-TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHH
Confidence            467766665 588999999999999997 999999999999999999999987764   344566777777777777777


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      ..++..+   ..++.+|..|.||||+|+..|+.++|++||++|+++|..+..          |.||||+|+..|+.++|+
T Consensus       136 ~~Ll~~g---~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~----------g~t~Lh~A~~~g~~~~v~  202 (269)
T 4b93_B          136 KCLLDSN---AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK----------GNTALHEAVIEKHVFVVE  202 (269)
T ss_dssp             HHHHHTT---CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHCC---CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccC----------CCcHHHHHHHcCCHHHHH
Confidence            7666543   346777777777777777777777777777777777777755          777777777777777777


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCc
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGR  184 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~  184 (431)
                      +|+++|+|++.+|.+|+||||+|+++++
T Consensus       203 ~Ll~~Gad~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          203 LLLLHGASVQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             HHHHTTCCSCCCCTTSCCSGGGSCTTCH
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHhCCc
Confidence            7777777777777777777777776664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.96  E-value=1.6e-29  Score=243.95  Aligned_cols=201  Identities=21%  Similarity=0.229  Sum_probs=161.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+||..|+.++|++|+++|++++..+. .|.||||+|+..|+.++|++|+++++..   +..+.+++++|+..+..+.+.
T Consensus        45 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~  123 (299)
T 1s70_B           45 LAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE  123 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHHCCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Confidence            568999999999999999999999997 9999999999999999999999987753   455778888888888888888


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHH-CCCCCCcccccC----------------CCccccCCCCC
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHY----------------GTSMDLIGAGS  140 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~-~Gadvn~~d~~~----------------~~~~~~~~~G~  140 (431)
                      .++..+   ..++..+..|.||||+|+..|+.+++++|+. .|.+++..+...                .........|.
T Consensus       124 ~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~  200 (299)
T 1s70_B          124 YLISQG---AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (299)
T ss_dssp             HHHHTT---CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             HHHhCC---CCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCC
Confidence            877654   3467788888899999888888888887764 355544321000                00000113499


Q ss_pred             cHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCC
Q 014068          141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPS  205 (431)
Q Consensus       141 TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~  205 (431)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++| ..+++++..+..+.
T Consensus       201 t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  266 (299)
T 1s70_B          201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ  266 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            999999999999999999999999999999999999999999999997655 55677666554444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=1.7e-30  Score=246.06  Aligned_cols=180  Identities=24%  Similarity=0.186  Sum_probs=161.9

Q ss_pred             CEeeccCCHH----HHHHHHHcCCCCcc----cCCCCCchHHHHHHHh---CCHHHHHHHHhcCCCC-------------
Q 014068            1 MQACRYGHWE----VVQTLLLFRCNVTR----ADYLSGRTALHFAAVN---GHVRCIRLVVADFVPS-------------   56 (431)
Q Consensus         1 H~Aa~~G~~e----vVk~LL~~gadi~~----~d~~~G~TpLh~Aa~~---G~~eiv~~LL~~~~~~-------------   56 (431)
                      |+||..|+.+    ++++|+++|++++.    .|. .|+||||+|+..   |+.++|++|++.+...             
T Consensus         7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~-~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~   85 (256)
T 2etb_A            7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGS-TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD   85 (256)
T ss_dssp             HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTT-TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCC-CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence            6799999997    66777889999998    776 999999999999   9999999999876543             


Q ss_pred             -CCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCC-------------CchHHHHHHHcCCHHHHHHHHH---CC
Q 014068           57 -VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG-------------GITALHMAALNGYFDCVQLLLD---LH  119 (431)
Q Consensus        57 -~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~-------------G~TpLh~Aa~~g~~e~VklLL~---~G  119 (431)
                       +..+.+++++|+..+..+.++.++..+   ..++.++..             |.||||+|+..|+.++|++|++   +|
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~g  162 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENG---ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQP  162 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcC---CCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence             256899999999999999999888764   347777765             9999999999999999999999   99


Q ss_pred             CCCCcccccCCCccccCCCCCcHHHHHHh--cCCHH-------HHHHHHHCCCCC-------cccCCCCCcHHHHHHHhC
Q 014068          120 ANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNLK-------CCQVLLSRGASR-------MSLNCNGWLPLDVARMWG  183 (431)
Q Consensus       120 advn~~d~~~~~~~~~~~~G~TpLh~Aa~--~g~~e-------ivklLL~~GAdi-------n~~d~~G~TpLh~Aa~~g  183 (431)
                      ++++.+|..          |+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|
T Consensus       163 a~~n~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  232 (256)
T 2etb_A          163 ASLEATDSL----------GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEG  232 (256)
T ss_dssp             CCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CCcCccCCC----------CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhC
Confidence            999999976          9999999999  88988       999999999999       999999999999999999


Q ss_pred             cHHHHHHhcCC
Q 014068          184 RHWLEPLLAPS  194 (431)
Q Consensus       184 ~~~v~~LL~~~  194 (431)
                      +.+++++|++.
T Consensus       233 ~~~~v~~Ll~~  243 (256)
T 2etb_A          233 KIEIFRHILQR  243 (256)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHhC
Confidence            99998888654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=4.8e-30  Score=225.58  Aligned_cols=149  Identities=30%  Similarity=0.400  Sum_probs=139.8

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+. |+.+++++|++.+..                         
T Consensus        10 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~-------------------------   62 (162)
T 1ihb_A           10 ASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMKL-GNPEIARRLLLRGAN-------------------------   62 (162)
T ss_dssp             HHHHHHTCHHHHHHHTTSCCCTTCCCT-TSCCHHHHCCS-SCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccccCc-cCccHHHHHHc-CcHHHHHHHHHcCCC-------------------------
Confidence            578999999999999999999999987 99999999999 999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|++
T Consensus        63 --------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~  124 (162)
T 1ihb_A           63 --------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE----------GNLPLHLAAKEGHLRVVEFLVK  124 (162)
T ss_dssp             --------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence                    7788899999999999999999999999999999999876          9999999999999999999999


Q ss_pred             CCCC-CcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          161 RGAS-RMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       161 ~GAd-in~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      +|++ ++..|..|+||||+|+..|+.+++++|.+.
T Consensus       125 ~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A          125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            9998 699999999999999999999998777654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=3.2e-29  Score=232.72  Aligned_cols=203  Identities=20%  Similarity=0.210  Sum_probs=172.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC----CCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV----PFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~----~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..|+.++|++|++.|++++..+. .|.||||+|+..|+.+++++|++++....    ..+.++++.++..+....+
T Consensus        14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v   92 (240)
T 3eu9_A           14 VKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV   92 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHcCCCcCCCCC-CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH
Confidence            468999999999999999999999997 99999999999999999999999877543    3367899999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCC-HHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN-LKCC  155 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~-~eiv  155 (431)
                      +.++..+   ..++.++..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..++ .+++
T Consensus        93 ~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           93 VQLMKYG---ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN----------GMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHCCSSTTH
T ss_pred             HHHHHcC---CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC----------CCcHHHHHHHhCChHHHH
Confidence            8887653   347788899999999999999999999999999999998866          9999999996665 8999


Q ss_pred             HHHHHCCCCCcccCC-CCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCc
Q 014068          156 QVLLSRGASRMSLNC-NGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL  225 (431)
Q Consensus       156 klLL~~GAdin~~d~-~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~  225 (431)
                      ++|++.|++++..+. .|.||||+|+..|+.+++++|. .+++++.....+.        +++++|.+.|..
T Consensus       160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~--------t~l~~A~~~~~~  223 (240)
T 3eu9_A          160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE--------SALDLAKQRKNV  223 (240)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC--------BHHHHHHHTTCH
T ss_pred             HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC--------CHHHHHHHcCcH
Confidence            999999999999987 9999999999999999876655 4566555433322        667777665443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.4e-29  Score=225.38  Aligned_cols=150  Identities=27%  Similarity=0.419  Sum_probs=140.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCC-CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCN-VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gad-i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+||..|+.++|++|++.+.+ ++..+. .|+||||+|+..|+.+++++|++.+..                        
T Consensus         7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------   61 (172)
T 3v30_A            7 HQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGAD------------------------   61 (172)
T ss_dssp             HHHHHTTCHHHHHHHHTTCSGGGGCCCT-TSCCHHHHHHHTTCHHHHHHHHHHTCC------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCcccccCCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC------------------------
Confidence            579999999999999999987 777776 999999999999999999999987665                        


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                               ++.++..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+
T Consensus        62 ---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll  122 (172)
T 3v30_A           62 ---------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEALL  122 (172)
T ss_dssp             ---------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHH
Confidence                     7788899999999999999999999999999999999876          999999999999999999999


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      ++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       123 ~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A          123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999999999999999998877653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=7.7e-30  Score=231.26  Aligned_cols=152  Identities=23%  Similarity=0.220  Sum_probs=110.1

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHH
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL  105 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~  105 (431)
                      .|+||||+|+..|+.+++++|++++..   .+..+.+++++++..+....++.++..+   ..++.+|..|.||||+|+.
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~  110 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG---SNVNTKDFSGKTPLMWSII  110 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT---CCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCcHHHHHHH
Confidence            455555555555555555555544332   1223444444444444444444443332   2377788889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcH
Q 014068          106 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  185 (431)
Q Consensus       106 ~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~  185 (431)
                      .|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus       111 ~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          111 FGYSEMSYFLLEHGANVNDRNLE----------GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             HTCHHHHHHHHHTTCCSSCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence            99999999999999999888866          88999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 014068          186 WLEPLLAP  193 (431)
Q Consensus       186 ~v~~LL~~  193 (431)
                      +++++|.+
T Consensus       181 ~~v~~Ll~  188 (192)
T 2rfm_A          181 EVIKIFTE  188 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            98888754

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=9.5e-31  Score=244.72  Aligned_cols=185  Identities=19%  Similarity=0.184  Sum_probs=164.5

Q ss_pred             CEeeccCCHHHHHHHHHcCC----CCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHWEVVQTLLLFRC----NVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~ga----di~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~   73 (431)
                      |+|+..|+.++|++|++.+.    +++..+. .|+||||+|+..|+.+++++|++.++..   +..+.+++++++..+..
T Consensus        13 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   91 (236)
T 1ikn_D           13 HLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL   91 (236)
T ss_dssp             HHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHcCChhHHHHHHHHhhccHHHhhccCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            67999999999999998765    7888887 9999999999999999999999887653   45688999999999999


Q ss_pred             hhHHhhhhhhhh---hhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccc-cCCCccccCCCCCcHHHHHHhc
Q 014068           74 SSVKSKCDQSAL---SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF-HYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        74 ~~~~~~~~~~~~---~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~-~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                      ..+..++.....   ...++..+..|.||||+|+..|+.++|++|+++|++++..+. .          |.||||+|+..
T Consensus        92 ~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~----------g~tpL~~A~~~  161 (236)
T 1ikn_D           92 ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN----------GRTALHLAVDL  161 (236)
T ss_dssp             HHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT----------CCCHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC----------CCCHHHHHHHc
Confidence            999988876542   334688889999999999999999999999999999999886 5          99999999999


Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCC
Q 014068          150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  196 (431)
Q Consensus       150 g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~  196 (431)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.....
T Consensus       162 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          162 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            99999999999999999999999999999999999999877766544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=2.2e-29  Score=243.67  Aligned_cols=239  Identities=14%  Similarity=-0.001  Sum_probs=181.2

Q ss_pred             ccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC-CCCcchhhHhhhcCChhhHHhhhhhh
Q 014068            5 RYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV-PFEVMNTQIEGDRGDGSSVKSKCDQS   83 (431)
Q Consensus         5 ~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~~   83 (431)
                      ...+.+.|+.||..+ +++..|. .|+||||+|+..|+.++|++|+++++..+ ..+.+++++|+..++.+.++.++..+
T Consensus         8 ~~~~~~~v~~lL~~~-~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A            8 NTWKSKQLKSFLSSK-DTFKADV-HGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             GGCCHHHHHHHHHST-TTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHhC-CCCccCC-CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            344555555555444 6788887 89999999999999999999998776433 35789999999999999998887764


Q ss_pred             hhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCC-CcHHHHHHhcCCHHHHHHHHHCC
Q 014068           84 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG-STPLHFAACGGNLKCCQVLLSRG  162 (431)
Q Consensus        84 ~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G-~TpLh~Aa~~g~~eivklLL~~G  162 (431)
                         ..++.+|..|.||||+|+..|+.++|++|+++|++++..+..          | .||||+|+..|+.+++++|+++|
T Consensus        86 ---a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~----------g~~t~L~~A~~~~~~~~v~~Ll~~g  152 (285)
T 3kea_A           86 ---LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT----------GWKTSFYHAVMLNDVSIVSYFLSEI  152 (285)
T ss_dssp             ---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSS----------GGGSHHHHHHHTTCHHHHHHHHTTS
T ss_pred             ---CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCC----------CCCCHHHHHHHcCCHHHHHHHHhCC
Confidence               357888999999999999999999999999999999988866          7 79999999999999999999999


Q ss_pred             CCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhH-HHHHHHcCCccccccCCCC-Cchhh
Q 014068          163 ASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSV-LNVARECGLLSSTTSSSDD-ADTCA  239 (431)
Q Consensus       163 Adin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~-l~~A~~~G~~~~~~a~~~~-~~~C~  239 (431)
                      +++... ..|+||||+|+..|+.+++++|. .+++++.....+.        ++ +++|...|..+++...... .+.  
T Consensus       153 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~--------t~~L~~A~~~~~~~~v~~Ll~~gad~--  221 (285)
T 3kea_A          153 PSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF--------IPDIKLAIDNKDIEMLQALFKYDINI--  221 (285)
T ss_dssp             CTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBC--------CTTHHHHHHHTCHHHHHHHTTSCBCS--
T ss_pred             Cccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCC--------ChHHHHHHHcCCHHHHHHHHHcCCCC--
Confidence            887332 28899999999999999876665 4666655543322        43 8888888877665532111 111  


Q ss_pred             hhhccccchhccCCChHHHHHHHHHhhhcCCCCC
Q 014068          240 VCLERACTVAAEGCRHELCVRCALYLCSTNNIPS  273 (431)
Q Consensus       240 vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~  273 (431)
                         +.....++ ..||..+++.|++.|++....+
T Consensus       222 ---~~~~~~a~-~~~~~~iv~~Ll~~g~~~~~~~  251 (285)
T 3kea_A          222 ---YSANLENV-LLDDAEIAKMIIEKHVEYKSDS  251 (285)
T ss_dssp             ---TTTTGGGG-TTTCHHHHHHHHHHHHHHTTCT
T ss_pred             ---CCCChhhh-hcCCHHHHHHHHHcCCCCCCcc
Confidence               01112233 3589999999999999976433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.96  E-value=2e-28  Score=233.52  Aligned_cols=218  Identities=20%  Similarity=0.147  Sum_probs=167.0

Q ss_pred             CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC------CCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCC
Q 014068           22 VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP------SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG   95 (431)
Q Consensus        22 i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~------~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~   95 (431)
                      ++..|. +|+||||+|+..|+.++|++|++.+..      .+..+.+++++|+..+....++.++..+   ..++.+|..
T Consensus         2 ~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~~~~~~~   77 (282)
T 1oy3_D            2 FGYVTE-DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG---AGVLVAERG   77 (282)
T ss_dssp             CCCCCT-TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCTT
T ss_pred             CCccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCC
Confidence            345666 999999999999999999999986553      4567899999999999999999988764   457889999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCcccccC------------------------------------CCcc-ccCCC
Q 014068           96 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHY------------------------------------GTSM-DLIGA  138 (431)
Q Consensus        96 G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~------------------------------------~~~~-~~~~~  138 (431)
                      |.||||+|+..|+.+++++|+++|++........                                    +..+ .....
T Consensus        78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (282)
T 1oy3_D           78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (282)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred             CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence            9999999999999999999999987632211000                                    0000 00135


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCC-CCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHH
Q 014068          139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN-GWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVL  216 (431)
Q Consensus       139 G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~-G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l  216 (431)
                      |.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+ .+++++..+..+.        |++
T Consensus       158 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~--------tpL  229 (282)
T 1oy3_D          158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR--------TPL  229 (282)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC--------CHH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC--------CHH
Confidence            999999999999999999999999999999854 999999999999999976665 5666655443322        566


Q ss_pred             HHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q 014068          217 NVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSI  282 (431)
Q Consensus       217 ~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~  282 (431)
                      ++|..                              . |+..+++.|++.|++++..+..+.+|...
T Consensus       230 ~~A~~------------------------------~-~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          230 GSALL------------------------------R-PNPILARLLRAHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             HHHHT------------------------------S-SCHHHHHHHHHTTCCCCCCC---------
T ss_pred             HHHHH------------------------------c-CCcHHHHHHHHcCCCcCcCCCcccccccc
Confidence            66653                              2 67778999999999999888777766543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=3.4e-29  Score=251.40  Aligned_cols=184  Identities=21%  Similarity=0.179  Sum_probs=162.2

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcC------CCCCCCCcchhhHhhhcC---
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF------VPSVPFEVMNTQIEGDRG---   71 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~------~~~~~~~~~~l~~a~~~~---   71 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++++      ...+..+.+++++++..+   
T Consensus       171 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~  249 (373)
T 2fo1_E          171 MLAVLARRRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  249 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             HHHHHcChHHHHHHHHHCCCCCcccCC-CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcc
Confidence            679999999999999999999999997 9999999999999999999999754      345778999999999887   


Q ss_pred             ChhhHHhhhhhhhhhh-----hhcccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCcccccCCCccccCCCCCcHHHH
Q 014068           72 DGSSVKSKCDQSALSK-----FVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHF  145 (431)
Q Consensus        72 ~~~~~~~~~~~~~~~~-----~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~G-advn~~d~~~~~~~~~~~~G~TpLh~  145 (431)
                      ....+..++..+....     ..+..|..|.||||+|+..|+.++|++|+++| ++++..|..          |.||||+
T Consensus       250 ~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~----------g~TpL~~  319 (373)
T 2fo1_E          250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIML  319 (373)
T ss_dssp             HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHH
T ss_pred             hHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC----------CCCHHHH
Confidence            5666666665543211     12346778999999999999999999999876 999999976          9999999


Q ss_pred             HHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          146 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       146 Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      |+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|.+..
T Consensus       320 A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999998887653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.96  E-value=6.2e-29  Score=231.79  Aligned_cols=174  Identities=26%  Similarity=0.341  Sum_probs=160.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcC-C---CCCCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADF-V---PSVPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~-~---~~~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+ .   ..+..+.++++.++..+....+
T Consensus        49 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  127 (237)
T 3b7b_A           49 MEAAENNHLEAVKYLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV  127 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCCCCCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCHHHHHHHHhCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHH
Confidence            578999999999999999999999997 9999999999999999999999876 2   2456688999999999999999


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      +.++..+   ..++.++..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.++++
T Consensus       128 ~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~  194 (237)
T 3b7b_A          128 KLLLSKG---SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVV  194 (237)
T ss_dssp             HHHHHTT---CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHCC---CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHhCCHhHHH
Confidence            8887754   357888999999999999999999999999999999999876          999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      +|+++|++++.+|..|+||||+|+..++.+.+
T Consensus       195 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          195 LFLSRDSDVTLKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             HHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred             HHHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=2.9e-29  Score=249.85  Aligned_cols=179  Identities=13%  Similarity=0.049  Sum_probs=162.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhc----CCC--------------------C
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD----FVP--------------------S   56 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~----~~~--------------------~   56 (431)
                      |+|+..|+.++|++|+++|++++..   .|.||||+|+..|+.+++++|++.    +..                    .
T Consensus        58 ~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (364)
T 3ljn_A           58 HLACKFGCVDTAKYLASVGEVHSLW---HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK  134 (364)
T ss_dssp             HHHHHHCCHHHHHHHHHHCCCCCCB---TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcccc---CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC
Confidence            6799999999999999999976653   789999999999999999999987    443                    3


Q ss_pred             CCCCcchhhHhhhcC--ChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCC-----CCcccccC
Q 014068           57 VPFEVMNTQIEGDRG--DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN-----VSAVTFHY  129 (431)
Q Consensus        57 ~~~~~~~l~~a~~~~--~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gad-----vn~~d~~~  129 (431)
                      +..+.+++++++..+  ..+.++.++..+   ..++.+|..|.||||+|+..|+.++|++|+++|++     ++..+.. 
T Consensus       135 ~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g---a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~-  210 (364)
T 3ljn_A          135 HCKGQTALHWCVGLGPEYLEMIKILVQLG---ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ-  210 (364)
T ss_dssp             EESCCCHHHHHHHSCGGGHHHHHHHHHHT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT-
T ss_pred             CCCCCCHHHHHHHcCCchHHHHHHHHHcC---CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC-
Confidence            446889999999999  888888888764   45889999999999999999999999999999999     8888866 


Q ss_pred             CCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          130 GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       130 ~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                               |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++..
T Consensus       211 ---------g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          211 ---------GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             ---------CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             ---------CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence                     999999999999999999999999999999999999999999999999988877653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.96  E-value=4.2e-29  Score=241.45  Aligned_cols=178  Identities=22%  Similarity=0.228  Sum_probs=160.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC--CCCCcchhhHhhhcCChhhHHh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS--VPFEVMNTQIEGDRGDGSSVKS   78 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~--~~~~~~~l~~a~~~~~~~~~~~   78 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+...  ...+.+++++++..+..+.+..
T Consensus        97 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~  175 (285)
T 3d9h_A           97 HEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNS  175 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSSCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHH
T ss_pred             HHHHHCCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            679999999999999999999999997 9999999999999999999999987653  3457899999999999999998


Q ss_pred             hhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHH
Q 014068           79 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  158 (431)
Q Consensus        79 ~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklL  158 (431)
                      ++..+   ..++.+|..|.||||+|+..|+.++|++|+++|++++. +..          |.||||+|+..|+.+++++|
T Consensus       176 Ll~~g---~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~----------g~t~L~~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          176 LIAYG---GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKG----------QDSPLHAVVRTASEELACLL  241 (285)
T ss_dssp             HHHTT---CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBT----------TBCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCC---CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCC----------CCCHHHHHHHcCCHHHHHHH
Confidence            88664   35888999999999999999999999999999999995 544          99999999999999999999


Q ss_pred             HHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          159 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       159 L~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      +++|++++.+|.+|+||||+|+  ++.+++++|++..
T Consensus       242 l~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~  276 (285)
T 3d9h_A          242 MDFGADTQAKNAEGKRPVELVP--PESPLAQLFLERE  276 (285)
T ss_dssp             HHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC
T ss_pred             HHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhh
Confidence            9999999999999999999999  3456777666543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=2.3e-29  Score=242.51  Aligned_cols=182  Identities=22%  Similarity=0.204  Sum_probs=158.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCC--CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC----CCCCCCcchhhHhh-----h
Q 014068            1 MQACRYGHWEVVQTLLLFRCN--VTRADYLSGRTALHFAAVNGHVRCIRLVVADFV----PSVPFEVMNTQIEG-----D   69 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gad--i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~----~~~~~~~~~l~~a~-----~   69 (431)
                      |.|+..|+.+.++.|++.+.+  +|..|. .|+||||+|+..|+.++|++|++.+.    ..+..+.+++++++     .
T Consensus        81 ~~a~~~~~~~~~~~l~~~~~~~~~n~~d~-~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~  159 (276)
T 4hbd_A           81 HPELVRRHLVTFRAMSARLLDYVVNIADS-NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKT  159 (276)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCCC-CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhh
Confidence            567788899999999988766  888887 99999999999999999999999776    34567889999988     4


Q ss_pred             cCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhc
Q 014068           70 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                      .+....+..++..+   ...+..+..|.||||+|+..|+.++|++|+++|++++..|..          |+||||+|+..
T Consensus       160 ~~~~~~v~~Ll~~g---~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~----------G~TpLh~A~~~  226 (276)
T 4hbd_A          160 QDDIETVLQLFRLG---NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDD----------GSTALMCACEH  226 (276)
T ss_dssp             HHHHHHHHHHHHHS---CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcC---CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC----------CCCHHHHHHHC
Confidence            45555555555544   346777888999999999999999999999999999999976          99999999999


Q ss_pred             CCHHHHHHHHH-CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCC
Q 014068          150 GNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  196 (431)
Q Consensus       150 g~~eivklLL~-~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~  196 (431)
                      |+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|.+..+
T Consensus       227 g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            99999999999 899999999999999999999999999998876544

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=7e-29  Score=222.62  Aligned_cols=158  Identities=28%  Similarity=0.359  Sum_probs=143.8

Q ss_pred             CEeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |.|+..|+.++|++|++. +.+++..+. .|+||||+|+..|+.+++++|++.+..                        
T Consensus        10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------   64 (179)
T 3f6q_A           10 FTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGRSAVVEMLIMRGAR------------------------   64 (179)
T ss_dssp             HHHHHHTCHHHHHHHHHCTTSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC------------------------
T ss_pred             HHHHHcCCHHHHHHHHhcCcccccccCC-CCCCHHHHHHHcCcHHHHHHHHHcCCC------------------------
Confidence            468999999999999998 677888887 999999999999999999999987665                        


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                               ++.+|..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..|+.+++++|+
T Consensus        65 ---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll  125 (179)
T 3f6q_A           65 ---------INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACFWGQDQVAEDLV  125 (179)
T ss_dssp             ---------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHH
Confidence                     7888899999999999999999999999999999999976          999999999999999999999


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCC
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRF  202 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~  202 (431)
                      ++|++++.+|..|.||||+|+..++.+++++|. .+++++....
T Consensus       126 ~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~  169 (179)
T 3f6q_A          126 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY  169 (179)
T ss_dssp             HTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCC
T ss_pred             HCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCc
Confidence            999999999999999999999999999876554 5666654433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=4.1e-29  Score=220.75  Aligned_cols=150  Identities=29%  Similarity=0.425  Sum_probs=137.4

Q ss_pred             CEeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+|+..|+.++|++|++. +.+++..+. .|.||||+|+..|+.+++++|++++..                        
T Consensus        13 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------   67 (165)
T 3twr_A           13 LEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNRVSVVEYLLQHGAD------------------------   67 (165)
T ss_dssp             HHHHHHTCHHHHHHHCCTTTTTCCCTTT-TCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------
T ss_pred             HHHHHhCCHHHHHHHHHcCCCCcccccc-CCCCHHHHHHHcChHHHHHHHHhcCCC------------------------
Confidence            568999999999999984 567777776 899999999999999999999987654                        


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                               ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+
T Consensus        68 ---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll  128 (165)
T 3twr_A           68 ---------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHEAAAKGKYEICKLLL  128 (165)
T ss_dssp             ---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHH
T ss_pred             ---------CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHH
Confidence                     7888999999999999999999999999999999999876          999999999999999999999


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      ++|++++.+|..|+||||+|+. ++.+++++|...+
T Consensus       129 ~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          129 QHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             HTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             HcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            9999999999999999999877 8899999887654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=1.2e-28  Score=215.37  Aligned_cols=148  Identities=22%  Similarity=0.282  Sum_probs=138.0

Q ss_pred             CEeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+|+..|+.++|++|++. +.+++..+. .|.||||+ +..|+.+++++|++.+..                        
T Consensus         7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~-~g~t~L~~-~~~~~~~~v~~Ll~~g~~------------------------   60 (156)
T 1bd8_A            7 SGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQV-MMFGSTAIALELLKQGAS------------------------   60 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHH-SCTTCHHHHHHHHHTTCC------------------------
T ss_pred             HHHHHhCCHHHHHHHHHhhCcCccccCC-CCCcHHHH-HHcCCHHHHHHHHHCCCC------------------------
Confidence            578999999999999998 458898887 99999999 999999999999987665                        


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                               ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+
T Consensus        61 ---------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll  121 (156)
T 1bd8_A           61 ---------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT----------GALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             ---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHHTCHHHHHHHH
T ss_pred             ---------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHhChHHHHHHHH
Confidence                     7888999999999999999999999999999999999876          999999999999999999999


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      ++ ++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       122 ~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          122 AE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             hc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99 99999999999999999999999999988753

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.3e-29  Score=242.36  Aligned_cols=182  Identities=23%  Similarity=0.184  Sum_probs=159.1

Q ss_pred             CEeeccCCHHHHHHHHH----cCCCCcc----cCCCCCchHHHHHHHh---CCHHHHHHHHhcCCC--------------
Q 014068            1 MQACRYGHWEVVQTLLL----FRCNVTR----ADYLSGRTALHFAAVN---GHVRCIRLVVADFVP--------------   55 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~----~gadi~~----~d~~~G~TpLh~Aa~~---G~~eiv~~LL~~~~~--------------   55 (431)
                      |+||..|+.++|+.|++    .+++++.    .+. .|+||||+|+..   |+.++|++|++.++.              
T Consensus        18 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~-~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~   96 (273)
T 2pnn_A           18 FDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE-TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD   96 (273)
T ss_dssp             HHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTT-TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred             HHHHHcCCHHHHHHHHHHHhhcccccCCcccccCc-CCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence            57999999999998887    4666652    354 899999999987   999999999987642              


Q ss_pred             CCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCC--------------CCchHHHHHHHcCCHHHHHHHHH---C
Q 014068           56 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD--------------GGITALHMAALNGYFDCVQLLLD---L  118 (431)
Q Consensus        56 ~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~--------------~G~TpLh~Aa~~g~~e~VklLL~---~  118 (431)
                      .+..+.+++++|+..+..+.++.++..+   ..++.++.              .|.||||+|+..|+.++|++|++   +
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g---a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  173 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENG---ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ  173 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCC---CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC
Confidence            3457999999999999999999888764   34677776              79999999999999999999999   9


Q ss_pred             CCCCCcccccCCCccccCCCCCcHHHHHHhcCC---------HHHHHHHHHCCCCCc-------ccCCCCCcHHHHHHHh
Q 014068          119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLSRGASRM-------SLNCNGWLPLDVARMW  182 (431)
Q Consensus       119 Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivklLL~~GAdin-------~~d~~G~TpLh~Aa~~  182 (431)
                      |++++.+|..          |+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..
T Consensus       174 gad~~~~d~~----------g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          174 PADISARDSV----------GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             CCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             CCCceeeCCC----------CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence            9999999976          9999999999998         899999999999997       4899999999999999


Q ss_pred             CcHHHHHHhcCCCC
Q 014068          183 GRHWLEPLLAPSSD  196 (431)
Q Consensus       183 g~~~v~~LL~~~a~  196 (431)
                      |+.+++++|++...
T Consensus       244 g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          244 GKIGVLAYILQREI  257 (273)
T ss_dssp             TCHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHCCC
Confidence            99999877765433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.96  E-value=1.7e-27  Score=220.38  Aligned_cols=204  Identities=16%  Similarity=0.086  Sum_probs=170.6

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCC----CCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcc-cCCCCchHHHHHH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVP----SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK-AADGGITALHMAA  104 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~----~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~-~d~~G~TpLh~Aa  104 (431)
                      |.||||+|+..|+.+++++|++.+..    .+..+.++++.++..+..+.++.++...... .++. .+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-NLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC-CGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc-cccccCCCCCCCHHHHHH
Confidence            78999999999999999999986542    5677899999999999999999888775322 2444 7889999999999


Q ss_pred             HcCCHHHHHHHHHCC--CCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHh
Q 014068          105 LNGYFDCVQLLLDLH--ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW  182 (431)
Q Consensus       105 ~~g~~e~VklLL~~G--advn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~  182 (431)
                      ..|+.+++++|+++|  ++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  150 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQ----------GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV  150 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcC----------CCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            999999999999999  888888866          99999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCCC--CCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHH
Q 014068          183 GRHWLEPLLAPSS--DAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVR  260 (431)
Q Consensus       183 g~~~v~~LL~~~a--~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~  260 (431)
                      |+.+++++|.+..  +++..+..+        .|++++|...                               |+..+++
T Consensus       151 ~~~~~v~~Ll~~g~~~~~~~d~~g--------~t~L~~A~~~-------------------------------~~~~~v~  191 (228)
T 2dzn_A          151 GSLKLIELLCGLGKSAVNWQDKQG--------WTPLFHALAE-------------------------------GHGDAAV  191 (228)
T ss_dssp             TCHHHHHHHHTTTCCCSCCCCTTS--------CCHHHHHHHT-------------------------------TCHHHHH
T ss_pred             CCHHHHHHHHhcCcccccCcCCCC--------CCHHHHHHHc-------------------------------CCHHHHH
Confidence            9999988777654  333332222        2566666553                               5666888


Q ss_pred             HHH-HhhhcCCCCCCCCCCCCCCC
Q 014068          261 CAL-YLCSTNNIPSEMVGPPGSIP  283 (431)
Q Consensus       261 cll-~~ga~~n~~~~~~~~p~~~~  283 (431)
                      .|+ +.|++++..+..+.+|...+
T Consensus       192 ~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          192 LLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             HHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             HHHHhcCCCCCccCCCCCcHHHHH
Confidence            999 99999999888888887666

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=1.1e-27  Score=214.74  Aligned_cols=141  Identities=33%  Similarity=0.398  Sum_probs=125.9

Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHH
Q 014068           32 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  111 (431)
Q Consensus        32 TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  111 (431)
                      ++|+.||+.|+.++|++||++|++                                 +|.+|..|.||||+|+..++.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad---------------------------------vn~~d~~g~t~l~~a~~~~~~~~   52 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD---------------------------------VNASDSDGRTPLHHAAENGHKEV   52 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHH
Confidence            579999999999999999998775                                 88999999999999999999999


Q ss_pred             HHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh
Q 014068          112 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  191 (431)
Q Consensus       112 VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL  191 (431)
                      +++|+++|++++.++..          |+||||+|+..|+.++|++|+++|+++|.+|.+|+||||+|+..|+.+++++|
T Consensus        53 ~~~ll~~gad~~~~d~~----------g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~L  122 (169)
T 4gpm_A           53 VKLLISKGADVNAKDSD----------GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL  122 (169)
T ss_dssp             HHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhcccchhhhccC----------CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999976          99999999999999999999999999999999999999999999999997665


Q ss_pred             -cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcC
Q 014068          192 -APSSDAVMPRFHPSNYLSLPLLSVLNVARECG  223 (431)
Q Consensus       192 -~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G  223 (431)
                       ..+++++..+..+.        |++++|...|
T Consensus       123 l~~gad~~~~d~~G~--------TpL~~A~~~g  147 (169)
T 4gpm_A          123 ISKGADVNTSDSDGR--------TPLDLAREHG  147 (169)
T ss_dssp             HHTTCCTTCCCTTSC--------CHHHHHHHTT
T ss_pred             HHcCCCccccCCCCC--------CHHHHHHHcC
Confidence             45677666544433        6777776643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=8e-28  Score=236.93  Aligned_cols=203  Identities=23%  Similarity=0.163  Sum_probs=172.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcc---------------------------------cCCCCCchHHHHHHHhCCHHHHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTR---------------------------------ADYLSGRTALHFAAVNGHVRCIR   47 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~---------------------------------~d~~~G~TpLh~Aa~~G~~eiv~   47 (431)
                      |+||..|+.++|++||++|++++.                                 .|. .|+||||+|+..|+.++++
T Consensus        64 h~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~g~t~l~~A~~~~~~~~~~  142 (337)
T 4g8k_A           64 HNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDF-YGFTAFMEAAVYGKVKALK  142 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCT-TCCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhcc-CCCCHHHHHHHcCcHHHHH
Confidence            689999999999999999887653                                 444 7899999999999999999


Q ss_pred             HHHhcCCCCC-------------CCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC----HH
Q 014068           48 LVVADFVPSV-------------PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY----FD  110 (431)
Q Consensus        48 ~LL~~~~~~~-------------~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~----~e  110 (431)
                      +|+++++..+             ..+.++++.|+..++.+.++.++...  ...++.+|..|.|+||+++..++    .+
T Consensus       143 ~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~--gad~n~~d~~g~t~l~~~~~~~~~~~~~~  220 (337)
T 4g8k_A          143 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM--GADVNACDNMGRNALIHALLSSDDSDVEA  220 (337)
T ss_dssp             HHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS--CCCTTCCCTTSCCHHHHHHHHSCTTTHHH
T ss_pred             HHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc--CCCcCccCCCCCcHHHHHHHHcCcccHHH
Confidence            9998876432             34678999999999999998887542  33588999999999999887654    46


Q ss_pred             HHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 014068          111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEP  189 (431)
Q Consensus       111 ~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~-GAdin~~d~~G~TpLh~Aa~~g~~~v~~  189 (431)
                      ++++|+++|++++.++..          |+||||+|+..|+.+++++|++. |+++|.+|.+|+||||+|+..|+.++++
T Consensus       221 i~~lLl~~gad~n~~d~~----------g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~  290 (337)
T 4g8k_A          221 ITHLLLDHGADVNVRGER----------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  290 (337)
T ss_dssp             HHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCC----------CCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHH
Confidence            899999999999999976          99999999999999999999986 8999999999999999999999999987


Q ss_pred             HhcC-CCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccc
Q 014068          190 LLAP-SSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTT  229 (431)
Q Consensus       190 LL~~-~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~  229 (431)
                      +|++ |++++..             +++++|...|..+++.
T Consensus       291 ~Ll~~GAd~n~~-------------~~L~~A~~~~~~~iv~  318 (337)
T 4g8k_A          291 LLCKRGASTDCG-------------DLVMTARRNYDHSLVK  318 (337)
T ss_dssp             HHHTTSCSSTTC-------------CHHHHHHHTTCHHHHH
T ss_pred             HHHHCCCCCCCC-------------CHHHHHHHcCCHHHHH
Confidence            6654 5665432             4788898888765543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=7.5e-29  Score=239.26  Aligned_cols=184  Identities=24%  Similarity=0.292  Sum_probs=157.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++++..   .+..+.+++++++..+....+.
T Consensus        78 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  156 (299)
T 1s70_B           78 HQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ  156 (299)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHH
Confidence            679999999999999999999999997 999999999999999999999998764   3566889999998877777666


Q ss_pred             hhhhhhhhhh------------------------hhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcc
Q 014068           78 SKCDQSALSK------------------------FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM  133 (431)
Q Consensus        78 ~~~~~~~~~~------------------------~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~  133 (431)
                      .++.......                        .....+..|.||||+|+..|+.++|++|+++|++++..|..     
T Consensus       157 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~-----  231 (299)
T 1s70_B          157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD-----  231 (299)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT-----
T ss_pred             HHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC-----
Confidence            5543321110                        11235578999999999999999999999999999999876     


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       134 ~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                           |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+......+.+++....
T Consensus       232 -----g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~~  288 (299)
T 1s70_B          232 -----GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN  288 (299)
T ss_dssp             -----CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHHTT
T ss_pred             -----CCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence                 999999999999999999999999999999999999999998876666666665543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1.9e-29  Score=239.12  Aligned_cols=181  Identities=20%  Similarity=0.153  Sum_probs=157.5

Q ss_pred             CEeeccCCHHHHH----HHHHcCCCCcccCC---CCCchHHHHHH---HhCCHHHHHHHHhcCCC--------------C
Q 014068            1 MQACRYGHWEVVQ----TLLLFRCNVTRADY---LSGRTALHFAA---VNGHVRCIRLVVADFVP--------------S   56 (431)
Q Consensus         1 H~Aa~~G~~evVk----~LL~~gadi~~~d~---~~G~TpLh~Aa---~~G~~eiv~~LL~~~~~--------------~   56 (431)
                      |.||..|+.+.|+    +|++.|++++..+.   ..|+||||+|+   ..|+.+++++|++.++.              .
T Consensus        10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~   89 (260)
T 3jxi_A           10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV   89 (260)
T ss_dssp             HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence            5689999999554    45558999997762   37999999999   67999999999986532              2


Q ss_pred             CCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccC--------------CCCchHHHHHHHcCCHHHHHHHHH---CC
Q 014068           57 VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA--------------DGGITALHMAALNGYFDCVQLLLD---LH  119 (431)
Q Consensus        57 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d--------------~~G~TpLh~Aa~~g~~e~VklLL~---~G  119 (431)
                      +..+.+++++|+..++.+.++.++..+   ..++.++              ..|.||||+|+..|+.++|++|++   +|
T Consensus        90 d~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           90 YYRGQTALHIAIERRCKHYVELLVEKG---ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             SEESBCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhCC---CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            237889999999999999999988764   3467777              579999999999999999999999   99


Q ss_pred             CCCCcccccCCCccccCCCCCcHHHHHHhcCC---------HHHHHHHHHCCCCC-------cccCCCCCcHHHHHHHhC
Q 014068          120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVLLSRGASR-------MSLNCNGWLPLDVARMWG  183 (431)
Q Consensus       120 advn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivklLL~~GAdi-------n~~d~~G~TpLh~Aa~~g  183 (431)
                      ++++.+|..          |+||||+|+..|+         .+++++|+++|+++       +.+|..|+||||+|+..|
T Consensus       167 a~~~~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          167 ADLRRQDSR----------GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             CCTTCCCTT----------SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CCCcccCCC----------CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence            999999976          9999999999888         79999999999999       679999999999999999


Q ss_pred             cHHHHHHhcCC
Q 014068          184 RHWLEPLLAPS  194 (431)
Q Consensus       184 ~~~v~~LL~~~  194 (431)
                      +.+++++|++.
T Consensus       237 ~~~~v~~Ll~~  247 (260)
T 3jxi_A          237 KIGIFQHIIRR  247 (260)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHh
Confidence            99998877654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.95  E-value=2.4e-28  Score=236.28  Aligned_cols=209  Identities=14%  Similarity=0.034  Sum_probs=163.3

Q ss_pred             CHHHHHHHHhcC-CCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q 014068           42 HVRCIRLVVADF-VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  120 (431)
Q Consensus        42 ~~eiv~~LL~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Ga  120 (431)
                      ..+++++|.+.. ...+..+.++++.|+..+..+.++.++..+.   .++..  +|.||||+|+..|+.++|++|+++|+
T Consensus        12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~---~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga   86 (285)
T 3kea_A           12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGA---LKNLL--ENEFPLHQAATLEDTKIVKILLFSGL   86 (285)
T ss_dssp             HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTG---GGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCC---CCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            345566665532 3456778999999999999999999887643   35555  49999999999999999999999999


Q ss_pred             CCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCC-CcHHHHHHHhCcHHHHHHhcCCCCCCC
Q 014068          121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG-WLPLDVARMWGRHWLEPLLAPSSDAVM  199 (431)
Q Consensus       121 dvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G-~TpLh~Aa~~g~~~v~~LL~~~a~~~~  199 (431)
                      +++..+..          |.||||+|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|........
T Consensus        87 ~~~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  156 (285)
T 3kea_A           87 DDSQFDDK----------GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  156 (285)
T ss_dssp             CTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred             CCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence            99998876          9999999999999999999999999999999999 799999999999999887776643321


Q ss_pred             CCCCCCCCCchhhhhHHHHHHHcCCccccccCCCC---Cchhhhhhccc-cchhccCCChHHHHHHHHHhhhcCCCCCC
Q 014068          200 PRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDD---ADTCAVCLERA-CTVAAEGCRHELCVRCALYLCSTNNIPSE  274 (431)
Q Consensus       200 ~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~---~~~C~vcle~~-~~va~~~CgH~~C~~cll~~ga~~n~~~~  274 (431)
                      ..        ..+.|++++|...|..+++......   .........++ ...|+.. ||..++++|++.|++++..+.
T Consensus       157 ~~--------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~-~~~~~v~~Ll~~gad~~~~~~  226 (285)
T 3kea_A          157 DL--------AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN-KDIEMLQALFKYDINIYSANL  226 (285)
T ss_dssp             CC--------STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHH-TCHHHHHHHTTSCBCSTTTTG
T ss_pred             cc--------cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHc-CCHHHHHHHHHcCCCCCCCCh
Confidence            11        0356899999999987665421100   00000011244 6777777 888899999999999987663

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=2.9e-28  Score=233.04  Aligned_cols=228  Identities=15%  Similarity=0.034  Sum_probs=154.6

Q ss_pred             CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhc----CCC-------CCCCCcchhhHhhhc---CChhhHHhhhhhhh
Q 014068           19 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD----FVP-------SVPFEVMNTQIEGDR---GDGSSVKSKCDQSA   84 (431)
Q Consensus        19 gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~----~~~-------~~~~~~~~l~~a~~~---~~~~~~~~~~~~~~   84 (431)
                      ++..+..|. .|+||||+|+..|+.++|+.|++.    +..       .+..+.+++++|+..   +..+.++.++..+.
T Consensus         3 ~a~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            3 SAGEKPPRL-YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             --------C-CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             cccCCCCCc-ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            456666776 999999999999999999999863    322       256889999999976   88899988887754


Q ss_pred             hh----hhhcc----cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcc----ccCCCCCcHHHHHHhcCCH
Q 014068           85 LS----KFVNK----AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM----DLIGAGSTPLHFAACGGNL  152 (431)
Q Consensus        85 ~~----~~in~----~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~----~~~~~G~TpLh~Aa~~g~~  152 (431)
                      ..    .+++.    +|..|.||||+|+..|+.++|++||++|++++..+.......    .....|.||||+|+..|+.
T Consensus        82 ~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           82 KTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL  161 (273)
T ss_dssp             HTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred             cccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence            21    12333    667899999999999999999999999999999885100000    0001399999999999999


Q ss_pred             HHHHHHHH---CCCCCcccCCCCCcHHHHHHHhCc---------HHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHHHHH
Q 014068          153 KCCQVLLS---RGASRMSLNCNGWLPLDVARMWGR---------HWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVA  219 (431)
Q Consensus       153 eivklLL~---~GAdin~~d~~G~TpLh~Aa~~g~---------~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A  219 (431)
                      +++++|++   +|++++.+|..|+||||+|+..|+         .+++++|+ .+++++....                 
T Consensus       162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~-----------------  224 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK-----------------  224 (273)
T ss_dssp             HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCC-----------------
T ss_pred             HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccc-----------------
Confidence            99999999   999999999999999999999987         56665554 3444432000                 


Q ss_pred             HHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhh-cCCCCCCCCCCC
Q 014068          220 RECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCS-TNNIPSEMVGPP  279 (431)
Q Consensus       220 ~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga-~~n~~~~~~~~p  279 (431)
                             +.. ..+...      .+++..|+.. ||..+++.|++.|+ +|...+....+|
T Consensus       225 -------~~~-~~d~~g------~TpL~~A~~~-g~~~iv~~Ll~~ga~dp~~~~~~~~~~  270 (273)
T 2pnn_A          225 -------LEE-ITNRKG------LTPLALAASS-GKIGVLAYILQREIHEPECRHAAAHHH  270 (273)
T ss_dssp             -------GGG-CCCTTS------CCHHHHHHHT-TCHHHHHHHHHHHTC------------
T ss_pred             -------ccc-ccCCCC------CCHHHHHHHh-ChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence                   000 000000      2344444444 77788999999999 776655544433

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=221.92  Aligned_cols=183  Identities=22%  Similarity=0.199  Sum_probs=164.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++++..+...|.||||+|+..|+.+++++|++.+...   +..+.++++.++..+....++
T Consensus        47 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  126 (240)
T 3eu9_A           47 HWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA  126 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHH
Confidence            57899999999999999999999877657999999999999999999999977654   456789999999999999998


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCC-HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGY-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  156 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~-~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  156 (431)
                      .++..+.   .++.++..|.||||+|+..++ .+++++|++.|++++..+..         .|.||||+|+..|+.++++
T Consensus       127 ~Ll~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~  194 (240)
T 3eu9_A          127 YLIAKGQ---DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY---------HKNTALHWAVLAGNTTVIS  194 (240)
T ss_dssp             HHHHTTC---CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHHTCHHHHH
T ss_pred             HHHhcCC---CccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc---------CCCcHHHHHHHcCCHHHHH
Confidence            8877543   478889999999999997776 89999999999999998862         3999999999999999999


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|.+..
T Consensus       195 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            999999999999999999999999999999988886543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=2.2e-27  Score=234.10  Aligned_cols=193  Identities=12%  Similarity=0.032  Sum_probs=147.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcc-cCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCC---h
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTR-ADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGD---G   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~-~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~---~   73 (431)
                      |+|+..+..+++++|++.|++++. .|. .|+||||+|+..|+.++|++|+++++..   +..+.+++|+|+..++   .
T Consensus       102 ~~a~~~~~~~~~~~l~~~g~dvn~~~d~-~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~  180 (327)
T 1sw6_A          102 HVSFDSLLQEVNDAFPNTQLNLNIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDS  180 (327)
T ss_dssp             --CHHHHHHHHHHHCTTSCCCSCSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHT
T ss_pred             HHHHHhhHHHHHHHHHhcCCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccH
Confidence            345566667899999999999999 786 9999999999999999999999988764   5668899999999877   4


Q ss_pred             hhHHhhhhhhhhhhhhcccCCCCchHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCcccccC
Q 014068           74 SSVKSKCDQSALSKFVNKAADGGITALHMAAL----NGYFDCVQLLLDL--------------------HANVSAVTFHY  129 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~----~g~~e~VklLL~~--------------------Gadvn~~d~~~  129 (431)
                      ..+..++....  ..++.+|..|.||||+|+.    .|+.+++++|++.                    |++++..+.. 
T Consensus       181 ~~~~~ll~~~~--~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~-  257 (327)
T 1sw6_A          181 GTFEALLDYLY--PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE-  257 (327)
T ss_dssp             TCHHHHHHHHG--GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             HHHHHHHHhhh--ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc-
Confidence            44444444332  2488999999999999999    9999999999987                    8889888866 


Q ss_pred             CCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCC
Q 014068          130 GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYL  208 (431)
Q Consensus       130 ~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~  208 (431)
                               |.||||+|+.      +++|+++  +++.+|..|+||||+|+..|+.+++++| ..+++++..+..+.   
T Consensus       258 ---------g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~---  317 (327)
T 1sw6_A          258 ---------RKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL---  317 (327)
T ss_dssp             -----------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSC---
T ss_pred             ---------CCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC---
Confidence                     9999999985      8999998  6888999999999999999999987655 55777776655443   


Q ss_pred             chhhhhHHHHHHHc
Q 014068          209 SLPLLSVLNVAREC  222 (431)
Q Consensus       209 ~~~l~t~l~~A~~~  222 (431)
                           |++++|.+.
T Consensus       318 -----TpL~~A~~~  326 (327)
T 1sw6_A          318 -----RPVDFGAGL  326 (327)
T ss_dssp             -----CGGGGTCC-
T ss_pred             -----CHHHHHHhc
Confidence                 556666544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.4e-26  Score=209.70  Aligned_cols=151  Identities=23%  Similarity=0.197  Sum_probs=130.3

Q ss_pred             CCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccc
Q 014068           55 PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD  134 (431)
Q Consensus        55 ~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~  134 (431)
                      ..+..+.++++.|+..+....++.++...   ..++.+|..|.||||+|+..|+.++|++|+++|++++..+..      
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~------  100 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENF---DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS------  100 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHH---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT------
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhc---cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC------
Confidence            45678999999999999999999888764   357888999999999999999999999999999999999876      


Q ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhh
Q 014068          135 LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLL  213 (431)
Q Consensus       135 ~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~  213 (431)
                          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|. .+++++..+..+.        
T Consensus       101 ----g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~--------  168 (192)
T 2rfm_A          101 ----GKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGL--------  168 (192)
T ss_dssp             ----SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSC--------
T ss_pred             ----CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC--------
Confidence                999999999999999999999999999999999999999999999999976665 4566655443322        


Q ss_pred             hHHHHHHHcCCcc
Q 014068          214 SVLNVARECGLLS  226 (431)
Q Consensus       214 t~l~~A~~~G~~~  226 (431)
                      |++++|...|..+
T Consensus       169 t~l~~A~~~~~~~  181 (192)
T 2rfm_A          169 TAEASARIFGRQE  181 (192)
T ss_dssp             BHHHHHHHTTCHH
T ss_pred             CHHHHHHHhCcHH
Confidence            6777777765443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=1.2e-26  Score=216.89  Aligned_cols=194  Identities=19%  Similarity=0.126  Sum_probs=155.6

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHhcCC-------CCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCC
Q 014068           24 RADYLSGRTALHFAAVNGHVRCIRLVVADFV-------PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG   96 (431)
Q Consensus        24 ~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~-------~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G   96 (431)
                      ..|. +|.||||+|+..|+.+++++|++.+.       ..+..+.+++++|+..+....++.++..+   ..++.+|..|
T Consensus         3 ~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g   78 (236)
T 1ikn_D            3 QLTE-DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG---CDPELRDFRG   78 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC---CCSCCCCTTC
T ss_pred             cCCC-CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCC
Confidence            3455 89999999999999999999997543       34566889999999999999998887654   3578889999


Q ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCC------CcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCC
Q 014068           97 ITALHMAALNGYFDCVQLLLDLHANV------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC  170 (431)
Q Consensus        97 ~TpLh~Aa~~g~~e~VklLL~~Gadv------n~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~  170 (431)
                      .||||+|+..|+.+++++|+++|++.      +..+.          .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  148 (236)
T 1ikn_D           79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY----------NGHTCLHLASIHGYLGIVELLVSLGADVNAQEP  148 (236)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT----------TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999863      34443          399999999999999999999999999999997


Q ss_pred             -CCCcHHHHHHHhCcHHHHHHhcC-CCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCCCCchhhhhhccccch
Q 014068          171 -NGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTV  248 (431)
Q Consensus       171 -~G~TpLh~Aa~~g~~~v~~LL~~-~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~v  248 (431)
                       .|+||||+|+..|+.+++++|+. +++++..+..                   |                   .++..+
T Consensus       149 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-------------------g-------------------~tpl~~  190 (236)
T 1ikn_D          149 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ-------------------G-------------------YSPYQL  190 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT-------------------C-------------------CCGGGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCC-------------------C-------------------CCHHHH
Confidence             99999999999999999776654 4444332211                   1                   144455


Q ss_pred             hccCCChHHHHHHHHHhhhcCC
Q 014068          249 AAEGCRHELCVRCALYLCSTNN  270 (431)
Q Consensus       249 a~~~CgH~~C~~cll~~ga~~n  270 (431)
                      |+.. ||..++++|++.|+++.
T Consensus       191 A~~~-~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          191 TWGR-PSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             CTTS-SCHHHHHHHHTTSCGGG
T ss_pred             HHcc-CchHHHHHHHHcchhhh
Confidence            5555 88889999999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=3.3e-27  Score=222.23  Aligned_cols=154  Identities=21%  Similarity=0.232  Sum_probs=115.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |.|+..|+.++++.||++|++++.. . .|.||||+|+..|+.++|++|++.+..                         
T Consensus        10 ~~a~~~~~~~~~~~ll~~g~~~~~~-~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~-------------------------   62 (239)
T 1ycs_B           10 PPGKRTNLRKTGSERIAHGMRVKFN-P-LPLALLLDSSLEGEFDLVQRIIYEVDD-------------------------   62 (239)
T ss_dssp             -----------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-------------------------
T ss_pred             chhhhhhhHHHHHHHhccCCCcccC-c-hhhHHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            6899999999999999999999865 3 799999999999999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.+|..|.||||+|+..|+.++|++|+++|++++.+|..          |+||||+|+..|+.+++++|++
T Consensus        63 --------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~  124 (239)
T 1ycs_B           63 --------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD----------GWTPLHCAASCNNVQVCKFLVE  124 (239)
T ss_dssp             --------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence                    7888999999999999999999999999999999999976          9999999999999999999999


Q ss_pred             CCCCCcccCCCCC-cHHHHH--HHhCcHHHHHHhcC-CCCCCC
Q 014068          161 RGASRMSLNCNGW-LPLDVA--RMWGRHWLEPLLAP-SSDAVM  199 (431)
Q Consensus       161 ~GAdin~~d~~G~-TpLh~A--a~~g~~~v~~LL~~-~a~~~~  199 (431)
                      +|++++.+|..|. ||||+|  +..|+.+++++|.. +++.+.
T Consensus       125 ~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred             cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence            9999999998877 999999  78899998776654 444433

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.3e-26  Score=198.84  Aligned_cols=131  Identities=24%  Similarity=0.211  Sum_probs=121.8

Q ss_pred             CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCch
Q 014068           19 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT   98 (431)
Q Consensus        19 gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~T   98 (431)
                      +++++..+. .|.||||+|+..|+.+++++|++++..                                 ++.+|..|.|
T Consensus         2 ~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t   47 (136)
T 1d9s_A            2 SPGIHMLGG-SSDAGLATAAARGQVETVRQLLEAGAD---------------------------------PNALNRFGRR   47 (136)
T ss_dssp             CCCCSCCCC-CCSCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCT
T ss_pred             CCCccCCCC-CCccHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cCCcCCCCCC
Confidence            578898987 999999999999999999999987654                                 7888999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHH
Q 014068           99 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV  178 (431)
Q Consensus        99 pLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~  178 (431)
                      |||+|+. |+.+++++|+++|++++..+..         .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        48 ~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~  117 (136)
T 1d9s_A           48 PIQVMMM-GSAQVAELLLLHGAEPNCADPA---------TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL  117 (136)
T ss_dssp             TTTTSTT-SCHHHHHHHHHHTCCSSCCBTT---------TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHCCCCCCCcCCC---------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence            9999999 9999999999999999998843         28999999999999999999999999999999999999999


Q ss_pred             HHHhCcHHHHHHhcC
Q 014068          179 ARMWGRHWLEPLLAP  193 (431)
Q Consensus       179 Aa~~g~~~v~~LL~~  193 (431)
                      |+..++.+++++|.+
T Consensus       118 A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A          118 AEEQGHRDIARYLHA  132 (136)
T ss_dssp             HHHHTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH
Confidence            999999999887754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.5e-27  Score=215.64  Aligned_cols=148  Identities=11%  Similarity=0.055  Sum_probs=132.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCH----HHHHHHHhcCCCCCCCCcchhhHhhhcCChhhH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHV----RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSV   76 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~----eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~   76 (431)
                      |.||+.|+.+.++.|+..+.+  ..++..|+||||+|+.+|+.    +++++|+++|++                     
T Consensus        11 ~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---------------------   67 (186)
T 3t8k_A           11 SAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---------------------   67 (186)
T ss_dssp             HHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---------------------
T ss_pred             HHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---------------------
Confidence            358899999999999987754  44422799999999999985    599999998876                     


Q ss_pred             HhhhhhhhhhhhhcccCCCCchHHHHHHHcCC------HHHHHHHHHCCCCCCcccccCCCccccCCCCC-cHHHHHHhc
Q 014068           77 KSKCDQSALSKFVNKAADGGITALHMAALNGY------FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS-TPLHFAACG  149 (431)
Q Consensus        77 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~------~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~-TpLh~Aa~~  149 (431)
                                  +|.+|..|.||||+|+..|+      .++|++||++|+++|.+|..          |. ||||+|+..
T Consensus        68 ------------vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~----------g~ttpLh~A~~~  125 (186)
T 3t8k_A           68 ------------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP----------YKIVVFKNIFNY  125 (186)
T ss_dssp             ------------SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGG----------GTBCTTGGGGGC
T ss_pred             ------------CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCC----------cCchHHHHHHHc
Confidence                        89999999999999999987      68899999999999999977          99 999999994


Q ss_pred             C-----CHHHHHHHHH-CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC
Q 014068          150 G-----NLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  193 (431)
Q Consensus       150 g-----~~eivklLL~-~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~  193 (431)
                      +     +.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|..
T Consensus       126 ~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             CSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             CCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4     4679999999 999999999999999999999999999988864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=4.6e-26  Score=215.70  Aligned_cols=212  Identities=15%  Similarity=0.033  Sum_probs=154.1

Q ss_pred             CCchHHHHHHHhCCHHHHHHHH----hcCCCCC-------CCCcchhhHhh---hcCChhhHHhhhhhhhh--------h
Q 014068           29 SGRTALHFAAVNGHVRCIRLVV----ADFVPSV-------PFEVMNTQIEG---DRGDGSSVKSKCDQSAL--------S   86 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL----~~~~~~~-------~~~~~~l~~a~---~~~~~~~~~~~~~~~~~--------~   86 (431)
                      .|+|+||.|+..|+.++++.|+    +.+...+       ..+.+++++|+   ..+..+.++.++.....        .
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            7899999999999999655555    4666554       55889999998   67889999888876542        1


Q ss_pred             hhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcc----ccCCCCCcHHHHHHhcCCHHHHHHHHH--
Q 014068           87 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM----DLIGAGSTPLHFAACGGNLKCCQVLLS--  160 (431)
Q Consensus        87 ~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~----~~~~~G~TpLh~Aa~~g~~eivklLL~--  160 (431)
                      ..++..|..|.||||+|+..|+.++|++|+++|++++..+.......    .....|.||||+|+..|+.++|++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            22455556899999999999999999999999999999883100000    000139999999999999999999999  


Q ss_pred             -CCCCCcccCCCCCcHHHHHHHhCc---------HHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccc
Q 014068          161 -RGASRMSLNCNGWLPLDVARMWGR---------HWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTT  229 (431)
Q Consensus       161 -~GAdin~~d~~G~TpLh~Aa~~g~---------~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~  229 (431)
                       +|++++.+|..|+||||+|+..++         .+++++|+ .+++++....                        ...
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~------------------------~~~  219 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN------------------------LEA  219 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC------------------------GGG
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc------------------------hhh
Confidence             999999999999999999999887         56665554 4444421000                        000


Q ss_pred             cCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCC
Q 014068          230 SSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIP  272 (431)
Q Consensus       230 a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~  272 (431)
                       ..+...      .+++..|+.. ||..+++.|++.|.++..+
T Consensus       220 -~~d~~g------~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          220 -LLNNDG------LSPLMMAAKT-GKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             -CCCTTS------CCHHHHHHHT-TCHHHHHHHHHHHHHHHC-
T ss_pred             -cccCCC------CCHHHHHHHc-CCHHHHHHHHHhCCCcccc
Confidence             000000      2344444444 7777899999999887543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=6.8e-26  Score=200.38  Aligned_cols=148  Identities=20%  Similarity=0.209  Sum_probs=129.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~   48 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV---------------------------------INHTDEEGFTPLMWAAAHGQ   48 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC---------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC---------------------------------cCCCCCCCCCHHHHHHHCCC
Confidence            689999999999999999999987553                                 78889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .++|++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        49 ~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  118 (167)
T 3v31_A           49 IAVVEFLLQNGADPQLLGKG----------RESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV  118 (167)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999998866          99999999999999999999999999999999999999999999999997


Q ss_pred             HHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccc
Q 014068          189 PLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS  227 (431)
Q Consensus       189 ~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~  227 (431)
                      ++|. .+++++..+..+.        +++++|...|..++
T Consensus       119 ~~Ll~~g~~~~~~~~~g~--------t~l~~A~~~~~~~~  150 (167)
T 3v31_A          119 KMLLESGADPTIETDSGY--------NSMDLAVALGYRSV  150 (167)
T ss_dssp             HHHHHTTCCTTCCCTTSC--------CHHHHHHHHTCHHH
T ss_pred             HHHHHcCCCCCCcCCCCC--------CHHHHHHHcCcHHH
Confidence            6665 5666655443322        67777777655443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=4.1e-26  Score=215.81  Aligned_cols=169  Identities=19%  Similarity=0.068  Sum_probs=135.3

Q ss_pred             CCchHHHHHHHhCCHH----HHHHHHhcCCC-------CCCCCcchhhHhhhc---CChhhHHhhhhhhhhhhh----hc
Q 014068           29 SGRTALHFAAVNGHVR----CIRLVVADFVP-------SVPFEVMNTQIEGDR---GDGSSVKSKCDQSALSKF----VN   90 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~e----iv~~LL~~~~~-------~~~~~~~~l~~a~~~---~~~~~~~~~~~~~~~~~~----in   90 (431)
                      .|+||||+|+..|+.+    ++++|++++..       .+..+.+++++|+..   +..+.++.++..+.....    ++
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4899999999999997    66777777765       355789999999999   999999988876543221    11


Q ss_pred             ----ccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccC---CCCCcHHHHHHhcCCHHHHHHHHH---
Q 014068           91 ----KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI---GAGSTPLHFAACGGNLKCCQVLLS---  160 (431)
Q Consensus        91 ----~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~---~~G~TpLh~Aa~~g~~eivklLL~---  160 (431)
                          .+|..|.||||+|+..|+.++|++|+++|++++..+.......+..   ..|.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                2446799999999999999999999999999999885311111110   129999999999999999999999   


Q ss_pred             CCCCCcccCCCCCcHHHHHHH--hCcHH-------HHHHhcC-CCCC
Q 014068          161 RGASRMSLNCNGWLPLDVARM--WGRHW-------LEPLLAP-SSDA  197 (431)
Q Consensus       161 ~GAdin~~d~~G~TpLh~Aa~--~g~~~-------v~~LL~~-~a~~  197 (431)
                      +|++++.+|..|+||||+|+.  .++.+       ++++|.. ++++
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999  77777       7665543 4444

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.6e-26  Score=198.19  Aligned_cols=132  Identities=29%  Similarity=0.369  Sum_probs=117.8

Q ss_pred             CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCch
Q 014068           19 RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT   98 (431)
Q Consensus        19 gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~T   98 (431)
                      |+|+ .+|. .|+||||+|+..|+.+++++|++.+..                                 ++.+|..|.|
T Consensus         1 G~d~-~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t   45 (137)
T 3c5r_A            1 GIDP-FTNH-RGETLLHIASIKGDIPSVEYLLQNGSD---------------------------------PNVKDHAGWT   45 (137)
T ss_dssp             ---C-CCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCC
T ss_pred             CCCC-CcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCcCCCCCCC
Confidence            5677 5665 899999999999999999999987654                                 7888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHH
Q 014068           99 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV  178 (431)
Q Consensus        99 pLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~  178 (431)
                      |||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        46 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  115 (137)
T 3c5r_A           46 PLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY  115 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCcccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            999999999999999999999999999876          9999999999999999999999999999999999999999


Q ss_pred             HHHhCcHHHHHHhcCCC
Q 014068          179 ARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       179 Aa~~g~~~v~~LL~~~a  195 (431)
                      |+..++.+++.+|.+..
T Consensus       116 A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A          116 TDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CCCHHHHHHHSCC----
T ss_pred             HhhccHHHHHhhccccc
Confidence            99999999988887654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=2.5e-25  Score=197.63  Aligned_cols=164  Identities=18%  Similarity=0.123  Sum_probs=136.3

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  109 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  109 (431)
                      +.||||+|+..|+.+++++|++.+..                                .++.+|..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~   49 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDN--------------------------------LVNKPDERGFTPLIWASAFGEI   49 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSG--------------------------------GGGCCCTTSCCHHHHHHHTTCH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcc--------------------------------cccCCCCCCCCHHHHHHHcCCH
Confidence            57899999999999999999976432                                2678899999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 014068          110 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  189 (431)
Q Consensus       110 e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~  189 (431)
                      ++|++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        50 ~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  119 (172)
T 3v30_A           50 ETVRFLLEWGADPHILAKE----------RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE  119 (172)
T ss_dssp             HHHHHHHHHTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCchhhccc----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999876          999999999999999999999999999999999999999999999999976


Q ss_pred             Hhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhc
Q 014068          190 LLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCST  268 (431)
Q Consensus       190 LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~  268 (431)
                      +|. .+++++..+..+.        |++++|...                               |+..+++.|++.+++
T Consensus       120 ~Ll~~ga~~~~~~~~g~--------t~l~~A~~~-------------------------------~~~~~~~~L~~~~~~  160 (172)
T 3v30_A          120 ALLARGADLTTEADSGY--------TPMDLAVAL-------------------------------GYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHHTTCCTTCCCTTSC--------CHHHHHHHH-------------------------------TCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCccccCCCCC--------CHHHHHHHh-------------------------------CcHHHHHHHHHHHHH
Confidence            665 4566555433322        666666654                               455678888888888


Q ss_pred             CCCCCC
Q 014068          269 NNIPSE  274 (431)
Q Consensus       269 ~n~~~~  274 (431)
                      ......
T Consensus       161 ~~~~~~  166 (172)
T 3v30_A          161 LFQSNL  166 (172)
T ss_dssp             HSCC--
T ss_pred             HhcccC
Confidence            765443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=7.9e-28  Score=237.33  Aligned_cols=239  Identities=12%  Similarity=-0.073  Sum_probs=173.5

Q ss_pred             eccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchh-------------------
Q 014068            4 CRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT-------------------   64 (431)
Q Consensus         4 a~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l-------------------   64 (431)
                      ......++|++|+++|++++..+. .|.|+++     |+.++|++|++++.....   ..+                   
T Consensus        27 ~~~~~~dlv~~ll~~ga~i~~~~~-~g~~~~~-----g~~~~v~~Ll~~g~~~~~---~~~~~a~~~~~~~~~~~~~~~~   97 (327)
T 1sw6_A           27 IITFTHDLTSDFLSSPLKIMKALP-SPVVNDN-----EQKMKLEAFLQRLLFPEI---QEMPTSLNNDSSNRNSEGGSSN   97 (327)
T ss_dssp             EEECCTTCCCSTTTSSCCCEECBC-CCCCCCH-----HHHHHHHHHHHHHHC----------------------------
T ss_pred             hhhhcCchHHHHhhCCcccccCCC-CCCcccC-----chhHHHHHHHHhccCCcc---ccchHhhhcccccccccccCCc
Confidence            344556789999999999999997 9999988     999999999988765332   112                   


Q ss_pred             ----hHhhhcCChhhHHhhhhhhhhhhhhcc-cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCC
Q 014068           65 ----QIEGDRGDGSSVKSKCDQSALSKFVNK-AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG  139 (431)
Q Consensus        65 ----~~a~~~~~~~~~~~~~~~~~~~~~in~-~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G  139 (431)
                          ++++.......+..+.   .....+|. +|..|.||||+|+..|+.++|++||++|++++.++..          |
T Consensus        98 ~~~~~~a~~~~~~~~~~~l~---~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~----------g  164 (327)
T 1sw6_A           98 QQQQHVSFDSLLQEVNDAFP---NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM----------G  164 (327)
T ss_dssp             ------CHHHHHHHHHHHCT---TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTT----------C
T ss_pred             cchhHHHHHhhHHHHHHHHH---hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------C
Confidence                1122111112222221   12245788 8999999999999999999999999999999999976          9


Q ss_pred             CcHHHHHHhcCC---HHHHHHHHHCC-CCCcccCCCCCcHHHHHHH----hCcHHHHHHhcC------------------
Q 014068          140 STPLHFAACGGN---LKCCQVLLSRG-ASRMSLNCNGWLPLDVARM----WGRHWLEPLLAP------------------  193 (431)
Q Consensus       140 ~TpLh~Aa~~g~---~eivklLL~~G-Adin~~d~~G~TpLh~Aa~----~g~~~v~~LL~~------------------  193 (431)
                      +||||+|+..|+   .++++.|++++ ++++.+|..|+||||+|+.    .|+.+++++|..                  
T Consensus       165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~  244 (327)
T 1sw6_A          165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  244 (327)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             CCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence            999999999998   78889999886 7899999999999999999    899999877754                  


Q ss_pred             ---CCCCCCCCCCCCCCCchhhhhHHHHHHH------cCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHH
Q 014068          194 ---SSDAVMPRFHPSNYLSLPLLSVLNVARE------CGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALY  264 (431)
Q Consensus       194 ---~a~~~~~~~~~~~~~~~~l~t~l~~A~~------~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~  264 (431)
                         +++++.....    ..    ++++.|..      .+   +.  ..+      .--.+++..|+.. ||..++++|++
T Consensus       245 ~~~g~~~~~~~~~----g~----t~L~~a~~~~~Ll~~~---~n--~~d------~~G~TpLh~A~~~-g~~~~v~~Ll~  304 (327)
T 1sw6_A          245 NEKESKPNDKNGE----RK----DSILENLDLKWIIANM---LN--AQD------SNGDTCLNIAARL-GNISIVDALLD  304 (327)
T ss_dssp             -----------------------CHHHHHCSHHHHHHHT---TT--CCC------TTSCCHHHHHHHH-CCHHHHHHHHH
T ss_pred             hcccCCccccccc----CC----ChhHHHHHHHHHHHhC---CC--CCC------CCCCCHHHHHHHc-CCHHHHHHHHH
Confidence               4454443322    22    44444432      11   11  111      1124788889988 99999999999


Q ss_pred             hhhcCCCCCCCCCCCCCCCC
Q 014068          265 LCSTNNIPSEMVGPPGSIPC  284 (431)
Q Consensus       265 ~ga~~n~~~~~~~~p~~~~C  284 (431)
                      .|++++..+..+.+|.++++
T Consensus       305 ~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          305 YGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             TTCCTTCCCTTSCCGGGGTC
T ss_pred             cCCCCcccCCCCCCHHHHHH
Confidence            99999999988888877664

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=1.4e-25  Score=196.84  Aligned_cols=124  Identities=27%  Similarity=0.216  Sum_probs=114.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      ...||||+|+..|+.+++++|++++..                                 ++.+|..|.||||+|+. |+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~-~~   49 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVN---------------------------------VNAQNGFGRTALQVMKL-GN   49 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCC---------------------------------TTCCCTTSCCHHHHCCS-SC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCC---------------------------------ccccCccCccHHHHHHc-Cc
Confidence            467999999999999999999987654                                 77888999999999999 99


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        50 ~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  119 (162)
T 1ihb_A           50 PEIARRLLLRGANPDLKDRT----------GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV  119 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999998876          99999999999999999999999999999999999999999999999998


Q ss_pred             HHhcCCCC
Q 014068          189 PLLAPSSD  196 (431)
Q Consensus       189 ~LL~~~a~  196 (431)
                      ++|.+...
T Consensus       120 ~~Ll~~g~  127 (162)
T 1ihb_A          120 EFLVKHTA  127 (162)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHccC
Confidence            77765433

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=3e-25  Score=197.14  Aligned_cols=148  Identities=30%  Similarity=0.383  Sum_probs=130.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .+.|+||+|+..|+.++|++|++++..                                 ++.+|..|.||||+|+..|+
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~   59 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGAD---------------------------------VNAEDASGWTPLHLAAFNGH   59 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCC
Confidence            678999999999999999999988664                                 78889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .++|++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        60 ~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  129 (169)
T 2y1l_E           60 LEIVEVLLKNGADVNAVDHA----------GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV  129 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999866          99999999999999999999999999999999999999999999999997


Q ss_pred             HHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccc
Q 014068          189 PLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS  227 (431)
Q Consensus       189 ~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~  227 (431)
                      ++|. .+++++..+..+.        +++++|...|..++
T Consensus       130 ~~Ll~~g~~~~~~~~~g~--------t~l~~A~~~~~~~~  161 (169)
T 2y1l_E          130 EVLLKNGADVNAQDKFGK--------TAFDISIDNGNEDL  161 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSC--------CHHHHHHHTTCHHH
T ss_pred             HHHHHcCCCCCCcCCCCC--------CHHHHHHHhCCHHH
Confidence            6665 4566555443322        77888888766544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=1.9e-25  Score=195.02  Aligned_cols=148  Identities=25%  Similarity=0.218  Sum_probs=130.5

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  109 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  109 (431)
                      |.||||+|+..|+.+++++|++. ..                               ..++..|..|.||||+ +..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~-------------------------------~~~~~~~~~g~t~L~~-~~~~~~   48 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-EL-------------------------------VHPDALNRFGKTALQV-MMFGST   48 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TC-------------------------------CCTTCCCTTSCCHHHH-SCTTCH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hC-------------------------------cCccccCCCCCcHHHH-HHcCCH
Confidence            67999999999999999999976 21                               1277888999999999 999999


Q ss_pred             HHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 014068          110 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  189 (431)
Q Consensus       110 e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~  189 (431)
                      +++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        49 ~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  118 (156)
T 1bd8_A           49 AIALELLKQGASPNVQDTS----------GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS  118 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHH
Confidence            9999999999999999876          999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccc
Q 014068          190 LLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       190 LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      +|...++++..+..+.        +++++|...|..+++
T Consensus       119 ~Ll~~~~~~~~~~~g~--------t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A          119 FLAAESDLHRRDARGL--------TPLELALQRGAQDLV  149 (156)
T ss_dssp             HHHTTSCTTCCCTTSC--------CHHHHHHHSCCHHHH
T ss_pred             HHHhccCCCCcCCCCC--------CHHHHHHHcCcHHHH
Confidence            8887766655544333        788999888766554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.3e-28  Score=231.26  Aligned_cols=146  Identities=25%  Similarity=0.299  Sum_probs=120.2

Q ss_pred             HHHHHHcCCCCcccC--CCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhh
Q 014068           12 VQTLLLFRCNVTRAD--YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV   89 (431)
Q Consensus        12 Vk~LL~~gadi~~~d--~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~i   89 (431)
                      |+.||++|++++..+  ...|.||||+|+..|+.++|++|++.+..                                 +
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~   47 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---------------------------------P   47 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---------------------------------T
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---------------------------------C
Confidence            578899998876543  23678999999999999999999987654                                 7


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccC
Q 014068           90 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN  169 (431)
Q Consensus        90 n~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d  169 (431)
                      +.+|..|.||||+|+..|+.++|++|+++|++++..|..          |+||||+|+..|+.+++++|+++|++++.++
T Consensus        48 ~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~----------g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           48 SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH----------GWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            888999999999999999999999999999999999876          9999999999999999999999999999986


Q ss_pred             -CCCCcHHHHH--HHhCcHHHHHHhcC-CCCCCCC
Q 014068          170 -CNGWLPLDVA--RMWGRHWLEPLLAP-SSDAVMP  200 (431)
Q Consensus       170 -~~G~TpLh~A--a~~g~~~v~~LL~~-~a~~~~~  200 (431)
                       ..|+||||+|  +..|+.+++++|.. +++++..
T Consensus       118 ~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A          118 LSDGATAFEKCDPYREGYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             SSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred             CCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence             6999999999  99999999766654 5665554

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=7.6e-27  Score=204.98  Aligned_cols=134  Identities=23%  Similarity=0.178  Sum_probs=112.9

Q ss_pred             cCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHH
Q 014068           25 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA  104 (431)
Q Consensus        25 ~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa  104 (431)
                      .+. .|.||||+|+..|+.++|++|++++..                                 ++.+|..|.||||+|+
T Consensus         8 ~~~-~~~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~   53 (156)
T 1bi7_B            8 SME-PSADWLATAAARGRVEEVRALLEAGAN---------------------------------PNAPNSYGRRPIQVMM   53 (156)
T ss_dssp             --C-CSTTHHHHHHHHTCHHHHHHHHTTTCC---------------------------------TTCCCSSSCCTTTSSC
T ss_pred             CCc-cchHHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHH
Confidence            444 899999999999999999999987654                                 7888889999999985


Q ss_pred             HcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCc-HHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhC
Q 014068          105 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST-PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  183 (431)
Q Consensus       105 ~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~T-pLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g  183 (431)
                       .|+.++|++|+++|++++..+..          |.| |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus        54 -~~~~~~v~~Ll~~g~~~~~~d~~----------g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  122 (156)
T 1bi7_B           54 -MGSARVAELLLLHGAEPNCADPA----------TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG  122 (156)
T ss_dssp             -TTCHHHHHHHHTTTCCCCCCCTT----------TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHT
T ss_pred             -cCCHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhC
Confidence             99999999999999999999876          888 999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhcC-CCCCCCCCCC
Q 014068          184 RHWLEPLLAP-SSDAVMPRFH  203 (431)
Q Consensus       184 ~~~v~~LL~~-~a~~~~~~~~  203 (431)
                      +.+++++|.+ +++++.....
T Consensus       123 ~~~~v~~Ll~~ga~~~~~~~~  143 (156)
T 1bi7_B          123 HRDVARYLRAAAGGTRGSNHA  143 (156)
T ss_dssp             CHHHHHHHSSCC---------
T ss_pred             HHHHHHHHHHcCCCCCccCcC
Confidence            9999876654 5666555433

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=1.5e-25  Score=192.08  Aligned_cols=122  Identities=32%  Similarity=0.361  Sum_probs=116.0

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.||||+|+..|+.+++++|++++..                                 ++.+|..|.||||+|+..|+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~   59 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGAD---------------------------------VNAKDEYGLTPLYLATAHGH   59 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHTC
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCC
Confidence            689999999999999999999987654                                 78889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        60 ~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~  129 (136)
T 2jab_A           60 LEIVEVLLKNGADVNAVDAI----------GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA  129 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999999876          99999999999999999999999999999999999999999999999999


Q ss_pred             HHhcC
Q 014068          189 PLLAP  193 (431)
Q Consensus       189 ~LL~~  193 (431)
                      ++|.+
T Consensus       130 ~~Ll~  134 (136)
T 2jab_A          130 EILQK  134 (136)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88865

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=3.9e-25  Score=193.03  Aligned_cols=147  Identities=24%  Similarity=0.232  Sum_probs=128.5

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  109 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  109 (431)
                      +.|+||+|+..|+.+++++|++++.+                                 ++ .+..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~-~~~~g~t~L~~A~~~~~~   47 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAP---------------------------------FT-TDWLGTSPLHLAAQYGHF   47 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC---------------------------------CC-CCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CC-cCCCCCCHHHHHHHcCCH
Confidence            46999999999999999999987653                                 33 467899999999999999


Q ss_pred             HHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 014068          110 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  189 (431)
Q Consensus       110 e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~  189 (431)
                      +++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        48 ~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  117 (153)
T 1awc_B           48 STTEVLLRAGVSRDARTKV----------DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE  117 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999998876          999999999999999999999999999999999999999999999999976


Q ss_pred             Hhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccc
Q 014068          190 LLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       190 LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      +|. .+++++..+..+.        +++++|...|..+++
T Consensus       118 ~Ll~~ga~~~~~~~~g~--------t~l~~A~~~~~~~i~  149 (153)
T 1awc_B          118 LLIKYGADVHTQSKFCK--------TAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHTTCCTTCCCTTSC--------CHHHHHHHTTCHHHH
T ss_pred             HHHHcCCCccccCCCCC--------CHHHHHHHcCCHHHH
Confidence            665 5666655544333        889999998876654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=1.1e-24  Score=197.82  Aligned_cols=179  Identities=17%  Similarity=0.093  Sum_probs=153.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCC----CCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHH
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFV----PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA  104 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~----~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa  104 (431)
                      .+.||||+|+..|+.++++.|+.++.    ..+..+.++++.|+..+..+.++.++..+   ..++.++..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG---ADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCHHHHHH
Confidence            68999999999999999999998654    44567889999999999999999888764   357888999999999999


Q ss_pred             HcCCHHHHHHHH-HCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCC-CCCcccCCCCCcHHHHHHHh
Q 014068          105 LNGYFDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMW  182 (431)
Q Consensus       105 ~~g~~e~VklLL-~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~G-Adin~~d~~G~TpLh~Aa~~  182 (431)
                      ..|+.+++++|+ ..+++++..+..          |.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~  150 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRY----------GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL  150 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTT----------SCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHS
T ss_pred             HcCCHHHHHHHHhccCcccccccCC----------CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHh
Confidence            999999999999 677899988866          999999999999999999999999 99999999999999999998


Q ss_pred             Cc-----HHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccc
Q 014068          183 GR-----HWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       183 g~-----~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      ++     .+++++| ..+++++..+..+.        |++++|...|..+++
T Consensus       151 ~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~--------t~l~~A~~~~~~~~~  194 (201)
T 3hra_A          151 REGNQLYQDIVKLLMENGADQSIKDNSGR--------TAMDYANQKGYTEIS  194 (201)
T ss_dssp             SCCSHHHHHHHHHHHHTTCCTTCCCTTSC--------CHHHHHHHHTCHHHH
T ss_pred             ccchhhHHHHHHHHHHCCCCCCccCCCCC--------CHHHHHHHcCCHhHH
Confidence            87     7886655 55677666544433        788888887766543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.92  E-value=2.1e-24  Score=193.34  Aligned_cols=164  Identities=23%  Similarity=0.229  Sum_probs=136.3

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .+.++||+|+..|+.+++++|++++..                                .++.+|..|.||||+|+..|+
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~   51 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTEN--------------------------------DLNQGDDHGFSPLHWACREGR   51 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTS--------------------------------CTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcc--------------------------------cccccCCCCCCHHHHHHHcCc
Confidence            678999999999999999999976321                                278889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .++|++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        52 ~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v  121 (179)
T 3f6q_A           52 SAVVEMLIMRGARINVMNRG----------DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA  121 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999876          99999999999999999999999999999999999999999999999997


Q ss_pred             HHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhh
Q 014068          189 PLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCS  267 (431)
Q Consensus       189 ~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga  267 (431)
                      ++|. .+++++..+..+                                      .++...|+.. ++..+++.|++.|+
T Consensus       122 ~~Ll~~ga~~~~~~~~g--------------------------------------~tpl~~A~~~-~~~~~~~~L~~~g~  162 (179)
T 3f6q_A          122 EDLVANGALVSICNKYG--------------------------------------EMPVDKAKAP-LRELLRERAEKMGQ  162 (179)
T ss_dssp             HHHHHTTCCSSBCCTTS--------------------------------------CCGGGGSCHH-HHHHHHHHHHHTTC
T ss_pred             HHHHHCCCCcchhccCC--------------------------------------CCcHHHHHHH-HHHHHHHHHHHhhc
Confidence            6665 455544432211                                      1334444444 77789999999999


Q ss_pred             cCCCCC
Q 014068          268 TNNIPS  273 (431)
Q Consensus       268 ~~n~~~  273 (431)
                      +.+..+
T Consensus       163 ~~~~~~  168 (179)
T 3f6q_A          163 NLNRIP  168 (179)
T ss_dssp             CCSCBC
T ss_pred             CcccCC
Confidence            987544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=8.8e-25  Score=182.77  Aligned_cols=122  Identities=40%  Similarity=0.564  Sum_probs=114.7

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      +|+||||+|+..|+.+++++|++++..                                 ++..+..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~   47 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------------------------------VNAKDKNGRTPLHLAARNGH   47 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHHTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHcCc
Confidence            589999999999999999999987654                                 67788899999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        48 ~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  117 (126)
T 1n0r_A           48 LEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV  117 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCC----------CCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHH
Confidence            99999999999999998866          99999999999999999999999999999999999999999999999998


Q ss_pred             HHhcC
Q 014068          189 PLLAP  193 (431)
Q Consensus       189 ~LL~~  193 (431)
                      ++|.+
T Consensus       118 ~~Ll~  122 (126)
T 1n0r_A          118 KLLLE  122 (126)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=3.1e-25  Score=194.63  Aligned_cols=135  Identities=21%  Similarity=0.211  Sum_probs=111.2

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+ .|+.+++++|++.++.                         
T Consensus        17 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~-~~~~~~v~~Ll~~g~~-------------------------   69 (156)
T 1bi7_B           17 ATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAE-------------------------   69 (156)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHH-cCCHHHHHHHHHcCCC-------------------------
Confidence            679999999999999999999999997 9999999996 9999999999987664                         


Q ss_pred             hhhhhhhhhcccCCCCch-HHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~T-pLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                              ++.+|..|.| |||+|+..|+.++|++|+++|++++.++..          |.||||+|+..|+.+++++|+
T Consensus        70 --------~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~A~~~~~~~~v~~Ll  131 (156)
T 1bi7_B           70 --------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW----------GRLPVDLAEELGHRDVARYLR  131 (156)
T ss_dssp             --------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT----------CCCHHHHHHHHTCHHHHHHHS
T ss_pred             --------CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHhCHHHHHHHHH
Confidence                    7888999999 999999999999999999999999999976          999999999999999999999


Q ss_pred             HCCCCCcccCCCCCcHHHHHH
Q 014068          160 SRGASRMSLNCNGWLPLDVAR  180 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa  180 (431)
                      ++|++++.+|..|.||.+-+.
T Consensus       132 ~~ga~~~~~~~~g~t~~~~~~  152 (156)
T 1bi7_B          132 AAAGGTRGSNHARIDAAEGPS  152 (156)
T ss_dssp             SCC------------------
T ss_pred             HcCCCCCccCcCcCcccccCC
Confidence            999999999999999987543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=6.9e-26  Score=204.29  Aligned_cols=139  Identities=22%  Similarity=0.171  Sum_probs=122.5

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcc-----------cCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhc
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTR-----------ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR   70 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~-----------~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~   70 (431)
                      .|++.|..+++++|++.+.....           .+. .|.||||+|+..|+.+++++|++ +..               
T Consensus         6 ~aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------------   68 (183)
T 3deo_A            6 IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-EYETPWWTAARKADEQALSQLLE-DRD---------------   68 (183)
T ss_dssp             EEEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHH-HHHHHHHHHHHTTCHHHHHHHTT-TSC---------------
T ss_pred             HHHHhcCCchhHHHHHHhCCCCccccchhcccccCCC-CCCCHHHHHHHcCCHHHHHHHHh-cCC---------------
Confidence            68888899999999876433221           233 78999999999999999999997 433               


Q ss_pred             CChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccc-ccCCCccccCCCCCcHHHHHHhc
Q 014068           71 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT-FHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d-~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                                        ++.+|..|.||||+|+..|+.++|++|+++|++++..+ ..          |+||||+|+..
T Consensus        69 ------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~----------g~tpL~~A~~~  120 (183)
T 3deo_A           69 ------------------VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG----------GLTALHMAAGY  120 (183)
T ss_dssp             ------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS----------SCCHHHHHHHT
T ss_pred             ------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC----------CCCHHHHHHhc
Confidence                              78889999999999999999999999999999999888 44          99999999999


Q ss_pred             CCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcH
Q 014068          150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  185 (431)
Q Consensus       150 g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~  185 (431)
                      |+.+++++|+++|++++.+|..|+||||+|+..++.
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC
Confidence            999999999999999999999999999999986543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=3.6e-24  Score=188.90  Aligned_cols=130  Identities=25%  Similarity=0.226  Sum_probs=115.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.||||+|+..|+.+++++|++.+..                                .++..+..|.||||+|+..|+
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~   54 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSV--------------------------------NCRDIEGRQSTPLHFAAGYNR   54 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTT--------------------------------TCCCTTTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCC--------------------------------CccccccCCCCHHHHHHHcCh
Confidence            789999999999999999999964221                                256677889999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .++|++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        55 ~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  124 (165)
T 3twr_A           55 VSVVEYLLQHGADVHAKDKG----------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEIC  124 (165)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhcCCCCCccCCC----------CCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999976          99999999999999999999999999999999999999999999999997


Q ss_pred             HHhcC-CCCCCCC
Q 014068          189 PLLAP-SSDAVMP  200 (431)
Q Consensus       189 ~LL~~-~a~~~~~  200 (431)
                      ++|.+ +++++..
T Consensus       125 ~~Ll~~ga~~~~~  137 (165)
T 3twr_A          125 KLLLQHGADPTKK  137 (165)
T ss_dssp             HHHHHTTCCTTCC
T ss_pred             HHHHHcCCCCccc
Confidence            76654 4554443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.2e-24  Score=186.58  Aligned_cols=118  Identities=27%  Similarity=0.383  Sum_probs=111.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+||..|+.++|++|+++|++++..|. .|+||||+|+..|+.+++++|++++..                         
T Consensus        19 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------   72 (136)
T 2jab_A           19 LEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHGHLEIVEVLLKNGAD-------------------------   72 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHhCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            679999999999999999999999997 999999999999999999999987664                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.+|..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..|+.+++++|++
T Consensus        73 --------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           73 --------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF----------GKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             --------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC----------CCCHHHHHHHCCCHHHHHHHHH
Confidence                    7888999999999999999999999999999999999876          9999999999999999999999


Q ss_pred             CC
Q 014068          161 RG  162 (431)
Q Consensus       161 ~G  162 (431)
                      +|
T Consensus       135 ~G  136 (136)
T 2jab_A          135 LN  136 (136)
T ss_dssp             C-
T ss_pred             cC
Confidence            86

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=7.4e-25  Score=205.49  Aligned_cols=178  Identities=20%  Similarity=0.101  Sum_probs=149.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..|. .|+||||+|+..|+.+++++|++.++.                         
T Consensus        26 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~tpLh~A~~~g~~~~v~~Ll~~ga~-------------------------   79 (229)
T 2vge_A           26 LDAALTGELEVVQQAVKEMNDPSQPNE-EGITALHNAICGANYSIVDFLITAGAN-------------------------   79 (229)
T ss_dssp             HHHHHHTCHHHHHHHHHHSSCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCC-------------------------
Confidence            578999999999999999999999997 999999999999999999999988665                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHH--HhcCCHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVL  158 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~A--a~~g~~eivklL  158 (431)
                              ++.+|..|.||||+|+..|+.++|++|+++|++++..+..         .|.||||+|  +..|+.+++++|
T Consensus        80 --------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~---------~g~tpL~~A~a~~~~~~~~v~~L  142 (229)
T 2vge_A           80 --------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS---------DGATAFEKCDPYREGYADCATYL  142 (229)
T ss_dssp             --------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSS---------TTCCTGGGCCTTSTTHHHHHHHH
T ss_pred             --------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCC---------CCCCHHHHHHHHhcChHHHHHHH
Confidence                    7889999999999999999999999999999999998742         399999999  999999999999


Q ss_pred             HHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccc
Q 014068          159 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTT  229 (431)
Q Consensus       159 L~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~  229 (431)
                      +++|++++.+|..|.|||+.++.....  ..+|..++++++......      +.|+|++|...|..+++.
T Consensus       143 l~~ga~~~~~~~~~~~~l~~~~~~~~~--~~ll~~ga~~~~~~~d~~------G~TpL~~A~~~g~~~~v~  205 (229)
T 2vge_A          143 ADVEQSMGLMNSGAVYALWDYSAEFGD--ELSFREGESVTVLRRDGP------EETDWWWAALHGQEGYVP  205 (229)
T ss_dssp             HHHHHHTTTSGGGEEEESSCBCCSSTT--BCCBCTTCEEEEEESSCT------TCSSEEEEEETTEEEEEE
T ss_pred             HHcCCCcccccCCchHHHHHHhhcccc--ccCccccccccccccCCC------cccHHHHHHHcCCcceee
Confidence            999999999999999999976555433  234455555333322211      226677777777777665

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.5e-25  Score=190.71  Aligned_cols=119  Identities=20%  Similarity=0.244  Sum_probs=113.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+. |+.+++++|++++..                         
T Consensus        17 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~-~~~~~v~~Ll~~g~~-------------------------   69 (136)
T 1d9s_A           17 ATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMMM-GSAQVAELLLLHGAE-------------------------   69 (136)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TCCTTTTTSTT-SCHHHHHHHHHHTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcCCcCC-CCCCHHHHHHc-CCHHHHHHHHHCCCC-------------------------
Confidence            579999999999999999999999997 99999999999 999999999987664                         


Q ss_pred             hhhhhhhhhcccCCC-CchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d~~-G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                              ++.+|.. |.||||+|+..|+.+++++|+++|++++.++..          |.||||+|+..|+.+++++|+
T Consensus        70 --------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~A~~~~~~~~~~~Ll  131 (136)
T 1d9s_A           70 --------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW----------GRLPVDLAEEQGHRDIARYLH  131 (136)
T ss_dssp             --------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS----------SSCHHHHHHHHTCHHHHHHHH
T ss_pred             --------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHH
Confidence                    7888888 999999999999999999999999999999976          999999999999999999999


Q ss_pred             HCCCC
Q 014068          160 SRGAS  164 (431)
Q Consensus       160 ~~GAd  164 (431)
                      ++|||
T Consensus       132 ~~Gad  136 (136)
T 1d9s_A          132 AATGD  136 (136)
T ss_dssp             HHHCC
T ss_pred             HcCCC
Confidence            99986

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=8.5e-24  Score=177.83  Aligned_cols=117  Identities=28%  Similarity=0.400  Sum_probs=106.6

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~   52 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQ   52 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTSCCTTSSCHHHHHHHTTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cCccCCCCCcHHHHHHHcCC
Confidence            689999999999999999999987654                                 78889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .++|++|+++|++++..|..          |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|.   +.++.
T Consensus        53 ~~~v~~Ll~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~  119 (123)
T 3aaa_C           53 LEILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIK  119 (123)
T ss_dssp             HHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHH
Confidence            99999999999999999976          999999999999999999999999999999999999999994   44444


Q ss_pred             HHh
Q 014068          189 PLL  191 (431)
Q Consensus       189 ~LL  191 (431)
                      ++|
T Consensus       120 ~ll  122 (123)
T 3aaa_C          120 ALL  122 (123)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.8e-24  Score=178.27  Aligned_cols=120  Identities=43%  Similarity=0.614  Sum_probs=113.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..                         
T Consensus         7 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------------   60 (126)
T 1n0r_A            7 HLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGAD-------------------------   60 (126)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHHcCcHHHHHHHHHcCCC-------------------------
Confidence            578999999999999999999999987 999999999999999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|++
T Consensus        61 --------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~  122 (126)
T 1n0r_A           61 --------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLE  122 (126)
T ss_dssp             --------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCcHHHHHHHHH
Confidence                    7788889999999999999999999999999999998866          9999999999999999999999


Q ss_pred             CCCC
Q 014068          161 RGAS  164 (431)
Q Consensus       161 ~GAd  164 (431)
                      +|||
T Consensus       123 ~Gad  126 (126)
T 1n0r_A          123 AGAY  126 (126)
T ss_dssp             HTCC
T ss_pred             cCCC
Confidence            9986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=8.2e-25  Score=213.81  Aligned_cols=147  Identities=21%  Similarity=0.139  Sum_probs=110.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHc--
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN--  106 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~--  106 (431)
                      .+.++||.|+..|+.+.++.|++.+.+.+....                           ....+..|.||||+|+..  
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~---------------------------~~~~~~~g~t~Lh~A~~~~~  202 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP---------------------------GPDAQAPEELVLHLAVKVAN  202 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE---------------------------CSSSCSCEECHHHHHHHTCC
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCC---------------------------CcccCCCCccHHHHHHHhcc
Confidence            567899999999999999999987765443210                           012466789999999987  


Q ss_pred             -CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcH
Q 014068          107 -GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  185 (431)
Q Consensus       107 -g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~  185 (431)
                       |+.++|++||++|++++..|..          |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.
T Consensus       203 ~~~~~iv~~Ll~~gadvn~~d~~----------G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~  272 (301)
T 2b0o_E          203 QASLPLVDFIIQNGGHLDAKAAD----------GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK  272 (301)
T ss_dssp             TTTHHHHHHHHHHSSCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCH
T ss_pred             cCcHHHHHHHHhcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence             8899999999999999988866          99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCc
Q 014068          186 WLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL  225 (431)
Q Consensus       186 ~v~~LL~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~  225 (431)
                      +++++|......     .        +.|++++|.++|+.
T Consensus       273 ~iv~~Ll~~ga~-----~--------g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          273 ECEELLEQAQAG-----T--------FAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHHHHHHH-----T--------TSSCCC--------
T ss_pred             HHHHHHHHhcCC-----C--------CCChhHHHHhcCCc
Confidence            988777654332     1        12567788887764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=5.1e-24  Score=205.03  Aligned_cols=179  Identities=20%  Similarity=0.165  Sum_probs=154.1

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhc-----CCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVAD-----FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA  104 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~-----~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa  104 (431)
                      +++++|.|+..|+.+.++.|+..     ....+..+.+++++|+..++...++.++..+..  .++..+..|.||||+|+
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVC--KVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCC--CTTCCCTTSCCHHHHGG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC--cCCCCCCCCCCHHHHHH
Confidence            56788999999999999998754     445678899999999999999999988876542  47889999999999999


Q ss_pred             -----HcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHH
Q 014068          105 -----LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  179 (431)
Q Consensus       105 -----~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~A  179 (431)
                           ..++.+++++|++.|++++..+..          |.||||+|+..|+.++|++|+++|+++|.+|..|+||||+|
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A  223 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKASQA----------GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA  223 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCCTTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence                 668899999999999998888765          99999999999999999999999999999999999999999


Q ss_pred             HHhCcHHHHHHhcC--CCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccc
Q 014068          180 RMWGRHWLEPLLAP--SSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       180 a~~g~~~v~~LL~~--~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      +..|+.+++++|+.  +++++..+..+.        |++++|...|..+++
T Consensus       224 ~~~g~~~iv~~Ll~~~gad~~~~d~~g~--------TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          224 CEHGHKEIAGLLLAVPSCDISLTDRDGS--------TALMVALDAGQSEIA  266 (276)
T ss_dssp             HHHTCHHHHHHHHTSTTCCTTCCCTTSC--------CHHHHHHHHTCHHHH
T ss_pred             HHCCCHHHHHHHHhcCCCCCcCcCCCCC--------CHHHHHHHcCCHHHH
Confidence            99999999887765  666666554433        788888888766554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1.5e-24  Score=205.00  Aligned_cols=109  Identities=26%  Similarity=0.233  Sum_probs=101.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.||||+|+..|+.+++++|++ +..                                 +|.+|..|.||||+|+..|+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~---------------------------------~~~~d~~g~t~L~~A~~~g~   89 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRD---------------------------------VDAVDENGRTALLFVAGLGS   89 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCC---------------------------------TTCBCTTSCBHHHHHHHHTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCC---------------------------------CCCcCCCCCCHHHHHHHCCC
Confidence            68999999999999999999997 443                                 78889999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccc-ccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH
Q 014068          109 FDCVQLLLDLHANVSAVT-FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM  181 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d-~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~  181 (431)
                      .++|++|+++|++++..+ ..          |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus        90 ~~~v~~Ll~~ga~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           90 DKCVRLLAEAGADLDHRDMRG----------GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSS----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            999999999999999888 44          9999999999999999999999999999999999999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=6.6e-25  Score=206.43  Aligned_cols=141  Identities=23%  Similarity=0.250  Sum_probs=128.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..|. .|+||||+|+..|+.+++++|+++++.                         
T Consensus        42 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~-------------------------   95 (239)
T 1ycs_B           42 LDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVN-------------------------   95 (239)
T ss_dssp             HHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            578999999999999999999999997 999999999999999999999987665                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHH--HhcCCHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVL  158 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~A--a~~g~~eivklL  158 (431)
                              ++.+|..|.||||+|+..|+.++|++|+++|++++..+..         .+.||||+|  +..|+.+++++|
T Consensus        96 --------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~---------~~~t~l~~a~~~~~g~~~~~~~L  158 (239)
T 1ycs_B           96 --------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS---------DMQTAADKCEEMEEGYTQCSQFL  158 (239)
T ss_dssp             --------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS---------SCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             --------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC---------CCcchHHHHHHhhhccHHHHHHH
Confidence                    8889999999999999999999999999999999999876         244999999  889999999999


Q ss_pred             HHCCCCCccc---------CCCCCcHHHHHHHhCc
Q 014068          159 LSRGASRMSL---------NCNGWLPLDVARMWGR  184 (431)
Q Consensus       159 L~~GAdin~~---------d~~G~TpLh~Aa~~g~  184 (431)
                      +++|++++..         +..+.+++++|...|.
T Consensus       159 l~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          159 YGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            9999998876         5668888888877775

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=1.5e-23  Score=194.32  Aligned_cols=125  Identities=29%  Similarity=0.255  Sum_probs=112.5

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .|.||||+|+..|+.++|++|++.+..                                 ++.+|..|.||||+|+..|+
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~  118 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVG---------------------------------VNGLDKAGSTALYWACHGGH  118 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccCcHHHHHHHHhCCCC---------------------------------ccccCCCCCCHHHHHHHcCC
Confidence            678999999999999999999987654                                 78889999999999999999


Q ss_pred             HHHHHHHHHC-CCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHH
Q 014068          109 FDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL  187 (431)
Q Consensus       109 ~e~VklLL~~-Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v  187 (431)
                      .++|++|+++ |++++..+..          |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.++
T Consensus       119 ~~~v~~Ll~~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  188 (222)
T 3ehr_A          119 KDIVEMLFTQPNIELNQQNKL----------GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL  188 (222)
T ss_dssp             HHHHHHHTTSTTCCCCCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHH
T ss_pred             HHHHHHHHcCCCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHH
Confidence            9999999999 9999999976          9999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCC
Q 014068          188 EPLLAPSSD  196 (431)
Q Consensus       188 ~~LL~~~a~  196 (431)
                      +++|.....
T Consensus       189 l~~l~~~~~  197 (222)
T 3ehr_A          189 LKKKQGTDA  197 (222)
T ss_dssp             HC-------
T ss_pred             HHHHhccch
Confidence            876665443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=1.7e-23  Score=190.33  Aligned_cols=146  Identities=15%  Similarity=0.066  Sum_probs=120.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccC-CCCchHHHHHHHcC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNG  107 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g  107 (431)
                      .++++||.|++.|+.+.++.++..+                                   ++.++ ..|.||||+|+.+|
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~-----------------------------------~~~~~~~~g~T~Lh~A~~~~   49 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKG-----------------------------------YEDKESVLKSNILYDVLRNN   49 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHS-----------------------------------SSCHHHHHTTTHHHHHTTCS
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcC-----------------------------------cccccccCCCCHHHHHHHcC
Confidence            3578999999999999999988542                                   23333 56999999999999


Q ss_pred             CH----HHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCC------HHHHHHHHHCCCCCcccCCCCC-cHH
Q 014068          108 YF----DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN------LKCCQVLLSRGASRMSLNCNGW-LPL  176 (431)
Q Consensus       108 ~~----e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~------~eivklLL~~GAdin~~d~~G~-TpL  176 (431)
                      +.    ++|++||++|+++|.++..          |+||||+|+..|+      .+++++|+++|+++|.+|..|+ |||
T Consensus        50 ~~~~~~~iv~~Ll~~Gadvn~~d~~----------g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpL  119 (186)
T 3t8k_A           50 NDEARYKISMFLINKGADIKSRTKE----------GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF  119 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCCSSCCCTT----------CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTT
T ss_pred             CcchHHHHHHHHHHCCCCCCCCCCC----------CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHH
Confidence            85    5999999999999999976          9999999999887      6899999999999999999999 999


Q ss_pred             HHHHHhC-----cHHHHHHhc--CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccc
Q 014068          177 DVARMWG-----RHWLEPLLA--PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS  227 (431)
Q Consensus       177 h~Aa~~g-----~~~v~~LL~--~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~  227 (431)
                      |+|+..+     +.+++++|+  .+++++..+..+.        |++++|.+.|..++
T Consensus       120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~--------TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL--------TALEFVKRCQKPIA  169 (186)
T ss_dssp             GGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSC--------CHHHHHHTTTCHHH
T ss_pred             HHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCC--------CHHHHHHHcCCHHH
Confidence            9999954     345766555  5888877765544        78888887665443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.88  E-value=1.8e-23  Score=193.67  Aligned_cols=129  Identities=26%  Similarity=0.303  Sum_probs=106.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhc-CCCCCCCCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |+||..|+.++|++|++.|++++..|. .|+||||+|+..|+.++|++|++. ++.                        
T Consensus        78 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~g~~------------------------  132 (222)
T 3ehr_A           78 HEAAKRGNLSWLRECLDNRVGVNGLDK-AGSTALYWACHGGHKDIVEMLFTQPNIE------------------------  132 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHTTSTTCC------------------------
T ss_pred             ccccccCcHHHHHHHHhCCCCccccCC-CCCCHHHHHHHcCCHHHHHHHHcCCCCC------------------------
Confidence            678999999999999999999999997 999999999999999999999976 543                        


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                               ++.+|..|.||||+|+..|+.++|++|+++|++++.++..          |.||||+|+..|+.++++.|+
T Consensus       133 ---------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~~l~~l~  193 (222)
T 3ehr_A          133 ---------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE----------KKLAFDMATNAACASLLKKKQ  193 (222)
T ss_dssp             ---------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT----------SCCHHHHCCSHHHHHHHC---
T ss_pred             ---------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----------CCCHHHHhcchhHHHHHHHHh
Confidence                     7889999999999999999999999999999999999976          999999999999999999999


Q ss_pred             HCCCCCcccCCCCC
Q 014068          160 SRGASRMSLNCNGW  173 (431)
Q Consensus       160 ~~GAdin~~d~~G~  173 (431)
                      +.|++.+..|..|+
T Consensus       194 ~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          194 GTDAVRTLSNAEDY  207 (222)
T ss_dssp             --------------
T ss_pred             ccchhhhccchhhh
Confidence            99999888776553

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.9e-22  Score=196.98  Aligned_cols=141  Identities=23%  Similarity=0.149  Sum_probs=102.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhc---CChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR---GDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~---~~~~~~~   77 (431)
                      |.|+..|+++.|++|++.|+        +-..+               +  .....+..+.+++++|+..   +....++
T Consensus       156 ~~A~~~g~~~~v~~ll~~g~--------d~~~~---------------~--~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~  210 (301)
T 2b0o_E          156 WTAICNRDLLSVLEAFANGQ--------DFGQP---------------L--PGPDAQAPEELVLHLAVKVANQASLPLVD  210 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC--------CTTSC---------------E--ECSSSCSCEECHHHHHHHTCCTTTHHHHH
T ss_pred             hhhhhccCHHHHHHHHhcCC--------ccccc---------------C--CCcccCCCCccHHHHHHHhcccCcHHHHH
Confidence            35778888888888887653        12110               0  0011344555666666654   5666666


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++..+   ..+|.+|..|.||||+|+..|+.++|++||++|++++.+|..          |.||||+|+..|+.+++++
T Consensus       211 ~Ll~~g---advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~----------G~TpL~~A~~~~~~~iv~~  277 (301)
T 2b0o_E          211 FIIQNG---GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----------GETALDIARKKHHKECEEL  277 (301)
T ss_dssp             HHHHHS---SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTT----------SCCHHHHHHHHTCHHHHHH
T ss_pred             HHHhcC---CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHH
Confidence            666653   358889999999999999999999999999999999999976          9999999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcH
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRH  185 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~  185 (431)
                      |+++|++      .|.||||+|+.+|+.
T Consensus       278 Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          278 LEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHH------TTSSCCC--------
T ss_pred             HHHhcCC------CCCChhHHHHhcCCc
Confidence            9999886      588999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=4.9e-23  Score=176.29  Aligned_cols=120  Identities=28%  Similarity=0.284  Sum_probs=107.8

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++++..                         
T Consensus        15 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------------   68 (137)
T 3c5r_A           15 HIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPLHEACNHGHLKVVELLLQHKAL-------------------------   68 (137)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCc-------------------------
Confidence            679999999999999999999999997 999999999999999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++.+|..|.||||+|+..|+.+++++|+++|++++.++..          |.||||+|+..+..+++++|.+
T Consensus        69 --------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           69 --------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF----------GLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             --------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCGGGGCCCHHHHHHHSCC--
T ss_pred             --------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHhhccHHHHHhhccc
Confidence                    7788889999999999999999999999999999999976          9999999999999999998887


Q ss_pred             CCCC
Q 014068          161 RGAS  164 (431)
Q Consensus       161 ~GAd  164 (431)
                      .+..
T Consensus       131 ~~~s  134 (137)
T 3c5r_A          131 NESS  134 (137)
T ss_dssp             ----
T ss_pred             cccC
Confidence            7654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=5e-22  Score=199.46  Aligned_cols=123  Identities=24%  Similarity=0.189  Sum_probs=107.7

Q ss_pred             CCchHHHHHHHh-CCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccC--CCCchHHHHHHH
Q 014068           29 SGRTALHFAAVN-GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA--DGGITALHMAAL  105 (431)
Q Consensus        29 ~G~TpLh~Aa~~-G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d--~~G~TpLh~Aa~  105 (431)
                      .+.|+||+|+.. |+.+++++|++++++                                 +|..+  ..|.||||+|+.
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gad---------------------------------vn~~~~~~~g~TpLh~Aa~  244 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGAD---------------------------------VNWVNGGQDNATPLIQATA  244 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCC---------------------------------TTCCCTTTTCCCHHHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCC---------------------------------CCccccccCCCCHHHHHHH
Confidence            678899999998 999999999987765                                 66666  788999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcH
Q 014068          106 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  185 (431)
Q Consensus       106 ~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~  185 (431)
                      .|+.++|++||++|++++..|..          |+||||+|+..|+.++|++||++|++++.+|.+|+||||+|+..|+.
T Consensus       245 ~g~~~iv~~LL~~Gadvn~~d~~----------G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~  314 (368)
T 3jue_A          245 ANSLLACEFLLQNGANVNQADSA----------GRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA  314 (368)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCH
Confidence            99999999999999999988866          89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 014068          186 WLEPLLAPS  194 (431)
Q Consensus       186 ~v~~LL~~~  194 (431)
                      +++++|+..
T Consensus       315 ~iv~lLl~~  323 (368)
T 3jue_A          315 DIVTLLRLA  323 (368)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            988777643

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=2.2e-22  Score=169.15  Aligned_cols=106  Identities=25%  Similarity=0.321  Sum_probs=98.4

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.+..                         
T Consensus        12 ~~A~~~~~~~~v~~ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~-------------------------   65 (123)
T 3aaa_C           12 MWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGAD-------------------------   65 (123)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTSCCT-TSSCHHHHHHHTTCHHHHHHHHTTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcCccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            579999999999999999999999997 999999999999999999999987664                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  150 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g  150 (431)
                              ++.+|..|.||||+|+..|+.++|++|+++|++++.++..          |.||||+|...+
T Consensus        66 --------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~  117 (123)
T 3aaa_C           66 --------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD----------GLTAFEATDNQA  117 (123)
T ss_dssp             --------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHCCCHH
T ss_pred             --------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHhCCHH
Confidence                    7889999999999999999999999999999999999976          999999995433

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.86  E-value=2e-24  Score=217.53  Aligned_cols=144  Identities=15%  Similarity=0.088  Sum_probs=73.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCC---cccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC-----CCCCCcchhhHhhhcCC
Q 014068            1 MQACRYGHWEVVQTLLLFRCNV---TRADYLSGRTALHFAAVNGHVRCIRLVVADFVP-----SVPFEVMNTQIEGDRGD   72 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi---~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~-----~~~~~~~~l~~a~~~~~   72 (431)
                      |+||..|+.++|++|+++|+..   +..+. .|.||||+|+..|+.++|++|++++++     ....+.++++.|+..++
T Consensus        97 h~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~-~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~  175 (376)
T 2aja_A           97 FVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH  175 (376)
T ss_dssp             HHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCcHHHHHHhcc-CCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCC
Confidence            4556666666666666665521   11222 455666666666666666666665531     11112455555555555


Q ss_pred             hhhHHhhhhhhhhhhhhcc--cCCCCchHHHHHH-HcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhc
Q 014068           73 GSSVKSKCDQSALSKFVNK--AADGGITALHMAA-LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        73 ~~~~~~~~~~~~~~~~in~--~d~~G~TpLh~Aa-~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                      .++++.++..+.   .++.  .|..|.||||+|+ .+|+.++|++|++.|+     +            |.||||+|+..
T Consensus       176 ~eiv~~Ll~~ga---~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----~------------~~taL~~Aa~~  235 (376)
T 2aja_A          176 LHVLNRLCELAP---TEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-----M------------LAYAEIHEFEY  235 (376)
T ss_dssp             HHHHHHHHHSCG---GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-----H------------HHHHHHCTTTT
T ss_pred             HHHHHHHHHcCC---ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-----c------------cchHHHHHHHC
Confidence            555555544432   1222  4444555555555 5555555555555442     1            44555555555


Q ss_pred             CCHHHHHHHHHCCCCC
Q 014068          150 GNLKCCQVLLSRGASR  165 (431)
Q Consensus       150 g~~eivklLL~~GAdi  165 (431)
                      |+.+++++|+++|+++
T Consensus       236 g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          236 GEKYVNPFIARHVNRL  251 (376)
T ss_dssp             TTTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCccc
Confidence            5555555555555444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.8e-21  Score=155.60  Aligned_cols=93  Identities=44%  Similarity=0.663  Sum_probs=86.9

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      +|+||||+|+..|+.+++++|++++..                                 ++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~n~~d~~g~t~L~~A~~~~~   47 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------------------------------VNAKDKNGRTPLHLAARNGH   47 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CcccCCCCCCHHHHHHHcCC
Confidence            489999999999999999999987665                                 78899999999999999999


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCC
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  164 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAd  164 (431)
                      .+++++|+++|++++.+|..          |.||||+|+..|+.+++++|+++||+
T Consensus        48 ~~~v~~Ll~~ga~~~~~d~~----------g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           48 LEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999976          99999999999999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=9.8e-22  Score=197.31  Aligned_cols=117  Identities=23%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             CCchHHHHHHHc-CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCC
Q 014068           95 GGITALHMAALN-GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW  173 (431)
Q Consensus        95 ~G~TpLh~Aa~~-g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~  173 (431)
                      .+.|+||+|+.. |+.++|++||++|++++..+..        ..|.||||+|+..|+.++|++|+++|+++|.+|..|+
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~--------~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~  269 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGG--------QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGR  269 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTT--------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccc--------cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            455666666666 6666666666666666665521        1266666666666666666666666666666666666


Q ss_pred             cHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccc
Q 014068          174 LPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS  227 (431)
Q Consensus       174 TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~  227 (431)
                      ||||+|+..|+.+++++|+ .+++++..+..+.        |++++|...|..++
T Consensus       270 TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~--------TpL~~A~~~g~~~i  316 (368)
T 3jue_A          270 GPLHHATILGHTGLACLFLKRGADLGARDSEGR--------DPLTIAMETANADI  316 (368)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC--------CHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCC--------CHHHHHHHCCCHHH
Confidence            6666666666666654443 3455444433322        55555555555433

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=2.5e-21  Score=186.95  Aligned_cols=130  Identities=26%  Similarity=0.244  Sum_probs=114.1

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHc---
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN---  106 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~---  106 (431)
                      ..++|+.|+..|+.+.++.|++.+......                           ..++..|..|.||||+|+..   
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~---------------------------~~l~~~~~~g~t~Lh~A~~~~~~  182 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEK---------------------------IPLANGHEPDETALHLAVRSVDR  182 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSB---------------------------CCCSSCSSTTCBHHHHHHHHCCT
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhh---------------------------ccccccccCCCCcchHHHHhccc
Confidence            357899999999999999999876541100                           01566688899999999999   


Q ss_pred             CCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHH
Q 014068          107 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW  186 (431)
Q Consensus       107 g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~  186 (431)
                      |+.++|++|+++|+++|..|..          |+||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.+
T Consensus       183 ~~~~~v~~Ll~~ga~in~~d~~----------g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~  252 (278)
T 1dcq_A          183 TSLHIVDFLVQNSGNLDKQTGK----------GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH  252 (278)
T ss_dssp             TTHHHHHHHHHHCSCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             chHHHHHHHHHCCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHH
Confidence            8999999999999999999976          999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 014068          187 LEPLLAPSSD  196 (431)
Q Consensus       187 v~~LL~~~a~  196 (431)
                      ++++|.+...
T Consensus       253 ~v~~Ll~~ga  262 (278)
T 1dcq_A          253 CEELLTQALS  262 (278)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHcCC
Confidence            9888866543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.85  E-value=1.1e-21  Score=162.70  Aligned_cols=108  Identities=32%  Similarity=0.393  Sum_probs=95.4

Q ss_pred             cCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHH
Q 014068           25 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA  104 (431)
Q Consensus        25 ~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa  104 (431)
                      +|. +|+||||+|+..|+.+++++|++++..                                 ++.+|..|.||||+|+
T Consensus         5 ~d~-~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~   50 (115)
T 2l6b_A            5 GSK-DGNTPLHNAAKNGHAEEVKKLLSKGAD---------------------------------VNARSKDGNTPLHLAA   50 (115)
T ss_dssp             CSC-SSCCHHHHHHHHTCHHHHHHHTTTTCC---------------------------------SSCCCSSSCCTTHHHH
T ss_pred             cCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHH
Confidence            455 899999999999999999999977554                                 7788889999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHH
Q 014068          105 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL  176 (431)
Q Consensus       105 ~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpL  176 (431)
                      ..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|+++|.++..|.||-
T Consensus        51 ~~~~~~~~~~Ll~~g~~~~~~d~~----------g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           51 KNGHAEIVKLLLAKGADVNARSKD----------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTTCHHHHHHHTTTTCCTTCCCTT----------CCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HcCcHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999999999988866          99999999999999999999999999999999998874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=2.6e-21  Score=186.78  Aligned_cols=120  Identities=23%  Similarity=0.291  Sum_probs=111.0

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcc------cCCCCCchHHHHHHHh---CCHHHHHHHHhcCCCCCCCCcchhhHhhhcCC
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTR------ADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD   72 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~------~d~~~G~TpLh~Aa~~---G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~   72 (431)
                      .|+..|+.+.++.|++.|++++.      .+. .|+||||+|+..   |+.+++++|+++++.                 
T Consensus       136 ~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~-~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-----------------  197 (278)
T 1dcq_A          136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGN-----------------  197 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----------------
T ss_pred             hHhhhcccHHHHHHHHhhcchhhhcccccccc-CCCCcchHHHHhcccchHHHHHHHHHCCCC-----------------
Confidence            57889999999999999999553      355 899999999999   999999999988765                 


Q ss_pred             hhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCH
Q 014068           73 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  152 (431)
Q Consensus        73 ~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~  152 (431)
                                      +|.+|..|.||||+|+..|+.++|++||++|++++.+|..          |.||||+|+..|+.
T Consensus       198 ----------------in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~----------g~tpL~~A~~~~~~  251 (278)
T 1dcq_A          198 ----------------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES----------GETPLDIAKRLKHE  251 (278)
T ss_dssp             ----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCH
T ss_pred             ----------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC----------CCCHHHHHHHcCCH
Confidence                            8899999999999999999999999999999999999976          99999999999999


Q ss_pred             HHHHHHHHCCCCC
Q 014068          153 KCCQVLLSRGASR  165 (431)
Q Consensus       153 eivklLL~~GAdi  165 (431)
                      +++++|+++|++.
T Consensus       252 ~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          252 HCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=5.2e-21  Score=152.90  Aligned_cols=90  Identities=40%  Similarity=0.537  Sum_probs=84.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCc
Q 014068           95 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL  174 (431)
Q Consensus        95 ~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~T  174 (431)
                      +|.||||+|+..|+.+++++|+++|++++.++..          |+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t   70 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT   70 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            4899999999999999999999999999999976          999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCcHHHHHHhcCC
Q 014068          175 PLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       175 pLh~Aa~~g~~~v~~LL~~~  194 (431)
                      |||+|+..|+.+++++|.+.
T Consensus        71 ~l~~A~~~~~~~~~~~Ll~~   90 (93)
T 1n0q_A           71 PLHLAARNGHLEVVKLLLEA   90 (93)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHc
Confidence            99999999999998877653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.85  E-value=9.2e-23  Score=205.38  Aligned_cols=163  Identities=13%  Similarity=0.129  Sum_probs=122.0

Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCC------CCCCCCcchhhHhhhcCChhhHHhh
Q 014068            6 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV------PSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         6 ~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~------~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      .++.+++++|+++|+        +++||||+|+..|+.++|++|++++.      ..+..+.++++.|+..|+.++++.+
T Consensus        76 ~~~~~~~~~l~~~g~--------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~L  147 (376)
T 2aja_A           76 RNAKQLWSDAHKKGI--------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL  147 (376)
T ss_dssp             TTCTTHHHHHHHHTC--------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC--------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHH
Confidence            355666677776654        45699999999999999999999887      3444566788888888888888888


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCc--ccccCCCccccCCCCCcHHHHHH-hcCCHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA--VTFHYGTSMDLIGAGSTPLHFAA-CGGNLKCCQ  156 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~--~d~~~~~~~~~~~~G~TpLh~Aa-~~g~~eivk  156 (431)
                      +..+.-....+..+.+ .||||+|+..|+.++|++|+++|++++.  .+..          |.||||+|+ ..|+.++|+
T Consensus       148 l~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~----------g~TpL~~Aa~~~G~~eiv~  216 (376)
T 2aja_A          148 CELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE----------NYYAFRWAAVGRGHHNVIN  216 (376)
T ss_dssp             HHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH----------HHHHHHHHHSTTCCHHHHH
T ss_pred             HhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCC----------CCCHHHHHHHHCCCHHHHH
Confidence            7765311111222222 7888888888888888888888888776  6655          888888888 888888888


Q ss_pred             HHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       157 lLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      +|+++|++       |.||||+|+.+|+.+++++|...
T Consensus       217 ~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~  247 (376)
T 2aja_A          217 FLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARH  247 (376)
T ss_dssp             HHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhc
Confidence            88887742       77888888888888887777653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=4.8e-21  Score=172.45  Aligned_cols=132  Identities=29%  Similarity=0.310  Sum_probs=120.0

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|++ |++++..|. .|+||||+|+..|+.+++++|++.++.                         
T Consensus        49 ~~A~~~g~~~~v~~Ll~-~~~~~~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~-------------------------  101 (183)
T 3deo_A           49 WTAARKADEQALSQLLE-DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGAD-------------------------  101 (183)
T ss_dssp             HHHHHTTCHHHHHHHTT-TSCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHh-cCCCCCcCC-CCCCHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Confidence            57899999999999999 999999997 999999999999999999999988765                         


Q ss_pred             hhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                              ++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..          |.||||+|+..++.       
T Consensus       102 --------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~A~~~~~~-------  156 (183)
T 3deo_A          102 --------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER----------GLTALELAREILKT-------  156 (183)
T ss_dssp             --------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT----------SCCHHHHHHHHHHT-------
T ss_pred             --------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCC----------CCCHHHHHHHhccC-------
Confidence                    67777 88999999999999999999999999999999976          99999999874432       


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                                ..+.++|++|+..|+.+++++|...
T Consensus       157 ----------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ----------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ----------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ----------cccccHHHHHHHcCHHHHHHHHHHh
Confidence                      4568999999999999999998754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.83  E-value=2.6e-21  Score=182.69  Aligned_cols=131  Identities=29%  Similarity=0.317  Sum_probs=119.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+|+..|+.++|++|++ |++++..|. .|+||||+|+..|+.++|++|+++++.                         
T Consensus        50 ~~A~~~g~~~~v~~Ll~-~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~-------------------------  102 (244)
T 3ui2_A           50 WTAARKADEQALSQLLE-DRDVDAVDE-NGRTALLFVAGLGSDKCVRLLAEAGAD-------------------------  102 (244)
T ss_dssp             HHHHTTTCHHHHHHTTT-TCCTTCBCT-TSCBHHHHHHHHTCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHc-CCCCCCcCC-CCCCHHHHHHHCCCHHHHHHHHHcCCC-------------------------
Confidence            67999999999999999 999999997 999999999999999999999988765                         


Q ss_pred             hhhhhhhhhcccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                              ++.++ ..|.||||+|+..|+.++|++|+++|++++.++..          |.||||+|+..++        
T Consensus       103 --------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------g~t~l~~A~~~~~--------  156 (244)
T 3ui2_A          103 --------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER----------GLTALELAREILK--------  156 (244)
T ss_dssp             --------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHHT--------
T ss_pred             --------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCcHHHHHHHHHh--------
Confidence                    77777 78999999999999999999999999999999976          9999999986322        


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcC
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  193 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~  193 (431)
                               +..+.||||+|+..|+.+++++|..
T Consensus       157 ---------~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          157 ---------TTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             ---------TCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------ccCCCCHHHHHHHcChHHHHHHHHH
Confidence                     2578899999999999999988875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.7e-19  Score=147.76  Aligned_cols=94  Identities=31%  Similarity=0.308  Sum_probs=86.1

Q ss_pred             hcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCccc
Q 014068           89 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  168 (431)
Q Consensus        89 in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~  168 (431)
                      ....|.+|.||||+|+..|+.+++++|+++|++++..|..          |.||||+|+..|+.+++++|+++|++++.+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~   86 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAGADVXAQ   86 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            5677889999999999999999999999999999999866          999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          169 NCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       169 d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                      |..|+||||+|+..|+.+++++|.
T Consensus        87 d~~g~tpl~~A~~~~~~~~~~~L~  110 (110)
T 2zgd_A           87 DKFGKTAFDISIDNGNEDLAEILQ  110 (110)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHhC
Confidence            999999999999999999999874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.78  E-value=2.3e-19  Score=148.61  Aligned_cols=101  Identities=34%  Similarity=0.407  Sum_probs=92.3

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCC
Q 014068           91 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC  170 (431)
Q Consensus        91 ~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~  170 (431)
                      .+|.+|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~   73 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD----------GNTPLHLAAKNGHAEIVKLLLAKGADVNARSK   73 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSS----------SCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCC
Confidence            56889999999999999999999999999999999866          99999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCC
Q 014068          171 NGWLPLDVARMWGRHWLEPLLA-PSSDAVMPR  201 (431)
Q Consensus       171 ~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~  201 (431)
                      .|+||||+|+..++.+++++|. .+++++...
T Consensus        74 ~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           74 DGNTPEHLAKKNGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             TCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC
Confidence            9999999999999999976665 466665543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=7.8e-18  Score=138.92  Aligned_cols=92  Identities=29%  Similarity=0.355  Sum_probs=83.0

Q ss_pred             cccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHH
Q 014068           23 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM  102 (431)
Q Consensus        23 ~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~  102 (431)
                      ...+. +|.||||+|+..|+.+++++|++++..                                 ++.+|..|.||||+
T Consensus        18 ~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------i~~~d~~g~tpLh~   63 (110)
T 2zgd_A           18 SHMGS-DLGKKLLEAARAGQDDEVRILMANGAD---------------------------------VAAKDKNGSTPLHL   63 (110)
T ss_dssp             ----C-CHHHHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHH
T ss_pred             cccCC-ccchHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHH
Confidence            34554 899999999999999999999987654                                 78889999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHH
Q 014068          103 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  158 (431)
Q Consensus       103 Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklL  158 (431)
                      |+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|
T Consensus        64 A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           64 AARNGHLEVVKLLLEAGADVXAQDKF----------GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccC----------CCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999976          99999999999999999987

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.63  E-value=9.3e-06  Score=59.87  Aligned_cols=53  Identities=28%  Similarity=0.574  Sum_probs=42.4

Q ss_pred             CCCchhhhhhccccchhcc--CCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceec
Q 014068          233 DDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  297 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~--~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l  297 (431)
                      .....|.+|++.....+..  +|||. +|..|+..+-...            ..||+||+.|.+++++
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i   61 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN------------KPCPVCRQPIQMIVLT   61 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT------------CCCTTTCCCCCEEEEE
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC------------CcCCCcCcchhceEee
Confidence            3446799999999888876  99999 6999998775321            2599999999988764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.54  E-value=2.4e-05  Score=58.37  Aligned_cols=52  Identities=31%  Similarity=0.749  Sum_probs=43.5

Q ss_pred             CCCCchhhhhhccccchhccCCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      ..+...|.+|++....++..+|||. +|..|+...                ..||+||..|..++++-.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----------------QQCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----------------SSCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----------------CCCCCCCcchhceEEeec
Confidence            3445679999999999999999999 799998732                259999999999887754

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.49  E-value=1.5e-05  Score=58.49  Aligned_cols=51  Identities=25%  Similarity=0.547  Sum_probs=40.5

Q ss_pred             Cchhhhhhccccchhcc--CCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceec
Q 014068          235 ADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  297 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~--~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l  297 (431)
                      ...|.+|++.....+..  +|||. +|..|+..+-...            ..||+||..|.+++++
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~------------~~CPiCR~~i~~~i~i   60 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG------------ASCPICKKEIQLVIKV   60 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT------------CBCTTTCCBCCEEEEE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC------------CcCCCcCchhhceEEE
Confidence            46799999988766555  99999 7999998775321            2599999999988775

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.18  E-value=7.1e-05  Score=57.52  Aligned_cols=48  Identities=29%  Similarity=0.596  Sum_probs=40.9

Q ss_pred             chhhhhhccccchhccCCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          236 DTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      ..|.+|++....++..+|||. +|..|+..+                ..||+||..|.+++++--
T Consensus        19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i~~   67 (79)
T 2yho_A           19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL----------------QSCPVCRSRVEHVQHVYL   67 (79)
T ss_dssp             TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----------------SBCTTTCCBCCEEEECBC
T ss_pred             CEeEEeCcccCcEEEECCCCHHHHHHHHHhc----------------CcCCCCCchhhCeEEEEe
Confidence            469999999999999999999 799998643                169999999999977643

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.17  E-value=5.8e-05  Score=57.17  Aligned_cols=46  Identities=28%  Similarity=0.678  Sum_probs=39.5

Q ss_pred             chhhhhhccccchhccCCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceec
Q 014068          236 DTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  297 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l  297 (431)
                      ..|.+|++........+|||. +|..|+..+                ..||+||..|.+.+++
T Consensus        25 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   71 (74)
T 4ic3_A           25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI   71 (74)
T ss_dssp             TBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----------------SBCTTTCCBCSEEEEC
T ss_pred             CCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----------------ccCCCcCcCccCcEEE
Confidence            469999999999889999999 899998654                3599999999987764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.14  E-value=0.00024  Score=54.04  Aligned_cols=57  Identities=25%  Similarity=0.503  Sum_probs=41.4

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ......|.+|++........+|||.+|..|+..+-....     ....+...||+||..+..
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~-----~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV-----TSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS-----SSCCCCCCCSSSCCCCCS
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc-----cCCCCCCcCCCCCCcCCH
Confidence            344567999999887777789999999999976643221     112345789999988764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.13  E-value=9.7e-05  Score=56.02  Aligned_cols=46  Identities=28%  Similarity=0.678  Sum_probs=38.4

Q ss_pred             chhhhhhccccchhccCCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceec
Q 014068          236 DTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  297 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l  297 (431)
                      ..|.+|++.....+..+|||. +|..|+...                ..||+||..|...+++
T Consensus        26 ~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   72 (75)
T 2ecg_A           26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI   72 (75)
T ss_dssp             HSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----------------SBCTTTCCBCCCCCBC
T ss_pred             CCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----------------CCCccCCceecCcEEE
Confidence            459999999999999999999 899998532                3599999999876554

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.05  E-value=0.0004  Score=53.28  Aligned_cols=55  Identities=27%  Similarity=0.606  Sum_probs=41.3

Q ss_pred             CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          233 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .....|.+|++........+|||.+|..|+..+-....      ...+...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR------NTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB------CTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc------CCCCCCCCCCCCCcCCH
Confidence            34567999999887777789999999999988755432      12234679999988764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.00023  Score=53.47  Aligned_cols=57  Identities=26%  Similarity=0.610  Sum_probs=41.8

Q ss_pred             CCCCchhhhhhccccc---hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCC
Q 014068          232 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  300 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~---va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~  300 (431)
                      ......|.||++....   +...+|||.+|..|+..+-...            ..||+||..|..+.+++++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~~~   71 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR------------KVCPLCNMPVLQLAQLSGP   71 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC------------SBCTTTCCBCSSCCSCCCS
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC------------CcCCCcCcccccccccCCC
Confidence            3445679999988533   3444899999999988775432            1599999999888777653

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.79  E-value=0.00048  Score=51.48  Aligned_cols=52  Identities=25%  Similarity=0.696  Sum_probs=39.9

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ......|.+|++........+|||.+|..|+..+-...         .+...||+||..|.
T Consensus        17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS---------CGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSS---------CSCCCCSSSCCCCC
T ss_pred             CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcC---------CCCCCCCCCCCcCC
Confidence            34456799999988877777999999999999885311         23357999998865

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.73  E-value=0.00035  Score=59.41  Aligned_cols=46  Identities=30%  Similarity=0.691  Sum_probs=37.6

Q ss_pred             hhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          237 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       237 ~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      .|.+|++..-.....+|||.+|..|+..+-...            ..||+||..|.+.
T Consensus        55 ~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           55 QCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK------------IECPICRKDIKSK  100 (138)
T ss_dssp             BCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC------------SBCTTTCCBCCCE
T ss_pred             CCcccCcccCCceECCCCCCccHHHHHHHHHcC------------CcCCCCCCcCCCC
Confidence            599999998888888999999999998774321            2499999988654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.72  E-value=0.0008  Score=50.26  Aligned_cols=52  Identities=17%  Similarity=0.393  Sum_probs=39.0

Q ss_pred             CCCCchhhhhhccccchhc-cCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccce
Q 014068          232 SDDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  295 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~-~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~  295 (431)
                      ......|.+|++....... .+|||.+|..|+..+-...            ..||+||..|..-.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------------NRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------------SSCTTTCCCCCSSC
T ss_pred             cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------------CcCCCcCcccCccc
Confidence            3445679999998876555 4999999999998775431            35999998876543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.65  E-value=0.0004  Score=51.82  Aligned_cols=48  Identities=27%  Similarity=0.618  Sum_probs=38.5

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ....|.||++........+|||.+|..|+..+-...            ..||+||..|..
T Consensus        14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~   61 (71)
T 2d8t_A           14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG------------KRCALCRQEIPE   61 (71)
T ss_dssp             SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS------------SBCSSSCCBCCH
T ss_pred             CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC------------CcCcCcCchhCH
Confidence            446799999998887788999999999998764321            369999998863

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=96.62  E-value=0.00075  Score=49.86  Aligned_cols=52  Identities=29%  Similarity=0.520  Sum_probs=37.9

Q ss_pred             CCCCchhhhhhccc---cchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccce
Q 014068          232 SDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  295 (431)
Q Consensus       232 ~~~~~~C~vcle~~---~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~  295 (431)
                      ......|.||++..   ..+...+|||.+|..|+..+-...            ..||+||..|....
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN------------KKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC------------CCCcCcCccccCcC
Confidence            34456799998764   446678899999999998775442            14999999887543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=96.62  E-value=0.00041  Score=48.73  Aligned_cols=47  Identities=28%  Similarity=0.543  Sum_probs=35.7

Q ss_pred             CCchhhhhhccccc----hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          234 DADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       234 ~~~~C~vcle~~~~----va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ....|.||++....    +...+|||.+|..|+..+-...            ..||+||..|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------------YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------------CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------------CcCCCCCCcCC
Confidence            44679999987644    7788899999888887764432            35999998765

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.61  E-value=0.001  Score=50.89  Aligned_cols=55  Identities=25%  Similarity=0.596  Sum_probs=39.9

Q ss_pred             CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          233 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .....|.+|++........+|||.+|..|+..+-.....      ..+...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML------DKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH------TTSCCCCTTTCCSSCS
T ss_pred             cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc------CCCCCcCCCCCCccCH
Confidence            445679999998877777899999998888776443110      1124579999988764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.59  E-value=0.00071  Score=49.76  Aligned_cols=49  Identities=22%  Similarity=0.650  Sum_probs=37.4

Q ss_pred             CCCCchhhhhhccccch-------hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          232 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~v-------a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ......|.||++.....       ...+|||.+|..|+..+-...            ..||+||..|.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~   67 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKIN   67 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC------------SSCTTTCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC------------CCCCCCCCccC
Confidence            34556799999986554       778999999999998775432            25999998875

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.57  E-value=0.00043  Score=51.01  Aligned_cols=53  Identities=30%  Similarity=0.625  Sum_probs=39.9

Q ss_pred             CCchhhhhhccccc-hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecC
Q 014068          234 DADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  298 (431)
Q Consensus       234 ~~~~C~vcle~~~~-va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~  298 (431)
                      ....|.+|++.... +...+|||.+|..|+..+-...            ..||+||..+..+.+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEECCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------------CcCcCCChhhHhhhhcc
Confidence            34679999998766 4778999999888887764322            25999999998765443

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.55  E-value=0.0013  Score=50.85  Aligned_cols=52  Identities=21%  Similarity=0.554  Sum_probs=39.0

Q ss_pred             CCCCchhhhhhccccc----hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          232 SDDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~----va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ......|.+|++....    ....+|||.+|..|+..+-...         .+...||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---------INGVRCPFCSKITR   67 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---------SSCBCCTTTCCCBC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---------CCCcCCCCCCCccc
Confidence            3445679999998776    6777999999999998875443         12357999998753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=96.53  E-value=0.00061  Score=47.88  Aligned_cols=48  Identities=33%  Similarity=0.650  Sum_probs=34.6

Q ss_pred             CCCchhhhhhccccc---hhccC-CChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          233 DDADTCAVCLERACT---VAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       233 ~~~~~C~vcle~~~~---va~~~-CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .+...|.+|++....   +...+ |||.+|..|+..+-..            ...||+||..|.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------------~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS------------HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT------------CCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc------------CCcCcCCCCEeE
Confidence            345679999988655   45554 9999999999877422            125999998763

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.50  E-value=0.00059  Score=50.61  Aligned_cols=51  Identities=22%  Similarity=0.640  Sum_probs=39.8

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccce
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  295 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~  295 (431)
                      ......|.+|++.... ...+|||.+|..|+..+-.            ....||+||..|....
T Consensus        12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~------------~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD------------RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC------------CCSSCHHHHHCTTCCC
T ss_pred             CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH------------CcCcCCCcCCcccCCC
Confidence            3445679999999888 8889999999999987632            1346999998887543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.44  E-value=0.0016  Score=47.58  Aligned_cols=49  Identities=31%  Similarity=0.682  Sum_probs=38.2

Q ss_pred             CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          233 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .....|.+|++..-.....+|||.+|..|+..+-..           +...||+||..|.
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-----------SSPKCTACQESIV   61 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-----------SSCCCTTTCCCCC
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-----------CcCCCCCCCcCCC
Confidence            445679999998877777899999999999888531           1235999998865

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=96.41  E-value=0.00074  Score=50.07  Aligned_cols=49  Identities=22%  Similarity=0.650  Sum_probs=37.5

Q ss_pred             CCCCchhhhhhccccch-------hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          232 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~v-------a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ..+...|.+|++.....       ...+|||.+|..|+..+-...            ..||+||..+.
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~   62 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKIN   62 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------------CCCCCCCCccC
Confidence            34456799999886554       788999999999998775432            25999998875

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.37  E-value=0.00085  Score=54.51  Aligned_cols=49  Identities=33%  Similarity=0.743  Sum_probs=38.0

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ..|.+|++........+|||.+|..|+..+-...         .+...||+||..+..
T Consensus        22 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQK---------KGPSQCPLCKNDITK   70 (112)
T ss_dssp             TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSS---------SSSCCCTTTSCCCCT
T ss_pred             CCCcccChhhcCeEECCCCCHHHHHHHHHHHHhC---------CCCCCCcCCCCcCCH
Confidence            3589999988777778999999999998875432         123569999988764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=96.30  E-value=0.002  Score=50.44  Aligned_cols=50  Identities=20%  Similarity=0.478  Sum_probs=38.1

Q ss_pred             CCCchhhhhhccccchhccC-CChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          233 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~~-CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ...-.|.+|++..-.....+ |||.+|..|+..+-....          ...||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~----------~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD----------EHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT----------TCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC----------CCcCcCCCCcCC
Confidence            34456999999887777778 999999999987754321          246999998864

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.25  E-value=0.00082  Score=50.95  Aligned_cols=55  Identities=22%  Similarity=0.482  Sum_probs=38.9

Q ss_pred             CCCchhhhhhcccc---chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          233 DDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       233 ~~~~~C~vcle~~~---~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      .....|.||++...   .+...+|||.+|..|+..+-...            ..||+||..|..-...+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------------DSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------------CSCTTTCCCCCCSCSCCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------------CcCcCcCCccCCcccCCC
Confidence            34567999987653   34556899999999988774321            259999999876554444

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=96.20  E-value=0.0028  Score=48.36  Aligned_cols=50  Identities=22%  Similarity=0.505  Sum_probs=35.3

Q ss_pred             CCCchhhhhhcccc--chhccC--CChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          233 DDADTCAVCLERAC--TVAAEG--CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       233 ~~~~~C~vcle~~~--~va~~~--CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .+...|.||++...  .++..+  |||.+|..|+...-..           +...||.||..+..
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----------~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----------ENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----------SCSBCTTTCCBCSS
T ss_pred             ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----------CCCCCCCCCCccCC
Confidence            34457999999542  234444  9999999999877422           12469999988764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=96.18  E-value=0.0012  Score=51.74  Aligned_cols=48  Identities=19%  Similarity=0.456  Sum_probs=36.1

Q ss_pred             CCCchhhhhhccccc---hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          233 DDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       233 ~~~~~C~vcle~~~~---va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .....|.||++....   +...+|||.+|..|+..+-...            ..||+||..|.
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~------------~~CP~Cr~~~~   88 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS------------GTCPVCRCMFP   88 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT------------CBCTTTCCBSS
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC------------CcCcCcCccCC
Confidence            345679999987655   6667899999999998875321            25999998764

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=96.15  E-value=0.0011  Score=48.01  Aligned_cols=47  Identities=23%  Similarity=0.660  Sum_probs=35.6

Q ss_pred             Cchhhhhhccccch-------hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          235 ADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       235 ~~~C~vcle~~~~v-------a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ...|.+|++.....       ...+|||.+|..|+..+-...            ..||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   56 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   56 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC------------SBCTTTCCBCTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC------------CCCCCCCccCCc
Confidence            35688898876543       678999999999998775432            259999988763

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.13  E-value=0.0015  Score=49.85  Aligned_cols=47  Identities=23%  Similarity=0.472  Sum_probs=38.0

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ....|.+|++........+|||.+|..|+..+-...            ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT------------PRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC------------SBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC------------CcCCCcCcccc
Confidence            345699999988877788999999999998875431            35999999876

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=96.08  E-value=0.0016  Score=54.07  Aligned_cols=47  Identities=23%  Similarity=0.533  Sum_probs=37.1

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ..|.+|++........+|||.+|..|+..+-..           ....||+||..+..
T Consensus        53 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           53 FQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-----------QVFSCPACRYDLGR   99 (124)
T ss_dssp             TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-----------TCCBCTTTCCBCCT
T ss_pred             CCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-----------CcCCCCCCCccCCC
Confidence            458999998877777899999999999877541           12369999988765

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=96.02  E-value=0.0016  Score=52.09  Aligned_cols=47  Identities=21%  Similarity=0.557  Sum_probs=37.6

Q ss_pred             Cchhhhhhccccchhc-cCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          235 ADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       235 ~~~C~vcle~~~~va~-~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ...|.+|++..-.... .+|||.+|..|+..+-....           ..||+||..+.
T Consensus        22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----------~~CP~Cr~~~~   69 (100)
T 3lrq_A           22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----------AQCPHCRAPLQ   69 (100)
T ss_dssp             HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----------SBCTTTCCBCC
T ss_pred             CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----------CCCCCCCCcCC
Confidence            3459999998877777 99999999999988765431           35999998874

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=96.02  E-value=0.0021  Score=63.74  Aligned_cols=54  Identities=26%  Similarity=0.551  Sum_probs=43.1

Q ss_pred             CchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          235 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      ...|.+|++........+|||.+|..|+...-..           ....||+||..|.....+.-
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-----------~~~~CP~CR~~i~~~~~i~v  385 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-----------EGQGCPFCRCEIKGTEPIVV  385 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-----------TCSBCTTTCCBCCEEEECSC
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-----------CCCCCCCCCCccCCceeEec
Confidence            3579999999999999999999999999877542           11359999999987655443

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.97  E-value=0.0013  Score=49.42  Aligned_cols=48  Identities=25%  Similarity=0.580  Sum_probs=35.1

Q ss_pred             CCCchhhhhhccccc---hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          233 DDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       233 ~~~~~C~vcle~~~~---va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .....|.||++....   +...+|||.+|..|+..+-...            ..||+||..|.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------------~~CP~Cr~~~~   71 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN------------RTCPICRADSG   71 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC------------SSCTTTCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC------------CcCcCcCCcCC
Confidence            345679999976443   4677899999888887764332            25999998865

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.97  E-value=0.00053  Score=48.76  Aligned_cols=44  Identities=25%  Similarity=0.545  Sum_probs=34.3

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ....|.+|++........+|||.+|..|+..               ....||+||..+.
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---------------~~~~CP~Cr~~~~   48 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSS
T ss_pred             cCCCceEeCCccCCeEEcCCCCcccHHHHcc---------------CCCCCCcCCcEee
Confidence            3456889999888888889999998887653               2357999998754

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=95.88  E-value=0.0016  Score=49.28  Aligned_cols=58  Identities=12%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCCCc
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  302 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~~~  302 (431)
                      ..-.|.+|++..-.....+|||.+|..|+..+-..           +...||+||..+..-...|+..+
T Consensus         7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-----------~~~~CP~C~~~~~~~~l~~n~~l   64 (78)
T 1t1h_A            7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-----------GHKTCPKSQETLLHAGLTPNYVL   64 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-----------TCCBCTTTCCBCSSCCCEECTTT
T ss_pred             ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-----------CcCCCCCCcCCCChhhCccCHHH
Confidence            34568899988777677799999999999887532           13469999988765444444433

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=95.79  E-value=0.0025  Score=55.04  Aligned_cols=48  Identities=25%  Similarity=0.587  Sum_probs=38.2

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      ..|.+|++........+|||.+|..|+..+-...           ...||+||..+..-
T Consensus        79 ~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           79 FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-----------VFSCPACRHDLGQN  126 (150)
T ss_dssp             TBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCTT
T ss_pred             CEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-----------CCcCCCCCccCCCC
Confidence            4599999988887778999999999998886431           23599999887654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=95.74  E-value=0.0017  Score=48.85  Aligned_cols=49  Identities=20%  Similarity=0.478  Sum_probs=37.3

Q ss_pred             CCchhhhhhccccchhccC-CChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          234 DADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~-CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ....|.+|++..-.....+ |||.+|..|+..+-...          +...||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~   63 (74)
T 2yur_A           14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDV   63 (74)
T ss_dssp             GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS----------SSSCCSSSCCSSC
T ss_pred             CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc----------CCCcCCCCCCcCC
Confidence            3456999999887777788 99999988888775442          1246999998644

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=95.72  E-value=0.0026  Score=46.33  Aligned_cols=46  Identities=24%  Similarity=0.538  Sum_probs=32.5

Q ss_pred             chhhhhhc-cccch----hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          236 DTCAVCLE-RACTV----AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       236 ~~C~vcle-~~~~v----a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ..|.+|++ .....    ...+|||.+|..|+..+-...           ...||+||..+.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~   54 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------AGNCPECGTPLR   54 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------SSSCTTTCCCCS
T ss_pred             CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-----------CCcCCCCCCccc
Confidence            45888888 22221    457999999999998874321           246999998875

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=95.61  E-value=0.0031  Score=50.11  Aligned_cols=46  Identities=24%  Similarity=0.561  Sum_probs=35.7

Q ss_pred             chhhhhhccccchhcc-CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          236 DTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       236 ~~C~vcle~~~~va~~-~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ..|.+|++........ +|||.+|..|+..+-...            ..||+||..+..
T Consensus        23 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~   69 (99)
T 2y43_A           23 LRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK------------TQCPTCCVTVTE   69 (99)
T ss_dssp             TBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC------------CBCTTTCCBCCG
T ss_pred             CCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC------------CCCCCCCCcCCh
Confidence            4589999887666555 899999999998875421            369999988764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=95.60  E-value=0.0047  Score=51.33  Aligned_cols=72  Identities=21%  Similarity=0.452  Sum_probs=48.1

Q ss_pred             CCCchhhhhhccccch-------hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCCCcccC
Q 014068          233 DDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDI  305 (431)
Q Consensus       233 ~~~~~C~vcle~~~~v-------a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~~~~~~  305 (431)
                      .+...|.||++..-..       ...+|||.+|..|+..+-...            ..||+||..+..-.      +..+
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~------l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINHKR------YHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC------------SBCTTTCCBCTTTC------EEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC------------CCCCCCCCcCcccc------cccc
Confidence            3456799999886554       788999999999998875332            26999998765322      2112


Q ss_pred             CCCCcccccccccCCCC
Q 014068          306 KQPLSLGLCTPCMLHTR  322 (431)
Q Consensus       306 ~~~~~~~~~~~~~~~~~  322 (431)
                      ..+-....|+.|.....
T Consensus        67 ~i~~~~~~C~iC~~~~~   83 (133)
T 4ap4_A           67 YIGSGTVSCPICMDGYS   83 (133)
T ss_dssp             BCSSSSCBCTTTCCBHH
T ss_pred             ccCCCCCCCCCCCCccc
Confidence            22334455888875543

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=95.60  E-value=0.0046  Score=50.38  Aligned_cols=52  Identities=25%  Similarity=0.639  Sum_probs=36.7

Q ss_pred             Cchhhhhhccccc------------------hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          235 ADTCAVCLERACT------------------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       235 ~~~C~vcle~~~~------------------va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .+.|.||++....                  +...+|||.+|..|+..+-...+       ......||+||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~-------~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN-------KDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC-------CSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc-------CCCCCcCCCCCCccCC
Confidence            3679999988532                  33788999999999988754332       1123469999987653

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=95.47  E-value=0.0014  Score=64.47  Aligned_cols=48  Identities=33%  Similarity=0.706  Sum_probs=40.9

Q ss_pred             CchhhhhhccccchhccCCChH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecC
Q 014068          235 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  298 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~~CgH~-~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~  298 (431)
                      ...|.+|++........+|||. +|..|+..+                ..||+||..|.+.+++.
T Consensus       295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----------------~~CP~CR~~i~~~~~i~  343 (345)
T 3t6p_A          295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----------------RKCPICRGIIKGTVRTF  343 (345)
T ss_dssp             TCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----------------SBCTTTCCBCCEEEECC
T ss_pred             CCCCCccCCcCCceEEcCCCChhHhHHHHhcC----------------CcCCCCCCCccCeEEee
Confidence            3579999999999999999999 899888643                35999999999988764

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=95.37  E-value=0.0022  Score=52.51  Aligned_cols=47  Identities=30%  Similarity=0.706  Sum_probs=37.1

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ..|.+|++........+|||.+|..|+..+-..           +...||+||..+..
T Consensus        16 ~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-----------ASLCCPFCRRRVSS   62 (115)
T ss_dssp             HBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-----------TTSBCTTTCCBCHH
T ss_pred             CCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-----------CcCCCCCCCcccCc
Confidence            459999998877777799999999999755321           12569999999875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=95.20  E-value=0.0046  Score=49.95  Aligned_cols=47  Identities=21%  Similarity=0.518  Sum_probs=36.9

Q ss_pred             Cchhhhhhccccchhcc-CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          235 ADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~-~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      ...|.+|++..-..... +|||.+|..|+..+-...            ..||.||..+..
T Consensus        15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~   62 (108)
T 2ckl_A           15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------------KYCPICDVQVHK   62 (108)
T ss_dssp             GTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------------SBCTTTCCBSCS
T ss_pred             cCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------------CcCcCCCccccc
Confidence            45699999987766665 999999999998875331            369999988764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=95.14  E-value=0.0049  Score=53.80  Aligned_cols=48  Identities=27%  Similarity=0.686  Sum_probs=37.1

Q ss_pred             chhhhhhccccchhcc-CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          236 DTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       236 ~~C~vcle~~~~va~~-~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      ..|.+|++..-..... +|||.+|..|+..+-...           ...||+||..|...
T Consensus        55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-----------NKECPTCRKKLVSK  103 (165)
T ss_dssp             HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCCSG
T ss_pred             CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-----------cCCCCCCCCcCCCc
Confidence            4699999987776555 999999999998885421           24699999988643

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=95.06  E-value=0.0071  Score=49.73  Aligned_cols=58  Identities=17%  Similarity=0.446  Sum_probs=42.1

Q ss_pred             CCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          231 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       231 ~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      .....-.|.+|++........+|||.+|..|+..+-...+           ..||+||..|..-...|.
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~~   71 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFPD   71 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-----------CCCCCCCCCcCHHhcccC
Confidence            3444567999999887777789999999999987754432           159999988775433333

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.66  E-value=0.0084  Score=45.85  Aligned_cols=46  Identities=33%  Similarity=0.671  Sum_probs=31.5

Q ss_pred             Cchhhhhhccccc---------------hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          235 ADTCAVCLERACT---------------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       235 ~~~C~vcle~~~~---------------va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .+.|.||++....               +....|||.++..|+...-...            ..||+||..+.
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~CR~~~~   75 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN------------NRCPLCQQDWV   75 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC------------CBCTTTCCBCC
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC------------CCCCCcCCCcc
Confidence            4557777765432               2344699999999998874332            15999998754

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.65  E-value=0.019  Score=40.28  Aligned_cols=47  Identities=28%  Similarity=0.653  Sum_probs=35.3

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccc
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  287 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~C  287 (431)
                      ......|.+|++........+|||.+|..|+..+-...         .....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL---------ERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS---------CCSCCCSCC
T ss_pred             cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc---------CCCCCCCCC
Confidence            34456799999988877788999999999999884321         123469988

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.52  E-value=0.015  Score=41.81  Aligned_cols=47  Identities=28%  Similarity=0.742  Sum_probs=35.4

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccc
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  287 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~C  287 (431)
                      ......|.||++........+|||.+|..|+..+-...         .+...||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS---------CGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHC---------SSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcC---------CCCCcCcCC
Confidence            34456799999988877778999999999998886431         122469988

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=94.34  E-value=0.012  Score=48.12  Aligned_cols=48  Identities=23%  Similarity=0.508  Sum_probs=37.7

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      ..|.+|++........+|||.+|..|+..+-...           ...||+||..+..-
T Consensus        24 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           24 ISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPT   71 (116)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGG
T ss_pred             CCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-----------cCcCCCCCCCCCHh
Confidence            4589999988777778999999999998775442           13599999987653

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=93.94  E-value=0.0051  Score=50.54  Aligned_cols=43  Identities=23%  Similarity=0.542  Sum_probs=34.3

Q ss_pred             chhhhhhccccchhcc-CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          236 DTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       236 ~~C~vcle~~~~va~~-~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      -.|.+|++..-..... +|||.+|..|+..+-.              ..||+||..+.
T Consensus        23 ~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------------~~CP~Cr~~~~   66 (117)
T 1jm7_B           23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------------TGCPVCYTPAW   66 (117)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------------TBCSSSCCBCS
T ss_pred             CCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------------CCCcCCCCcCc
Confidence            4588999888777777 9999999999876632              35999998874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=93.37  E-value=0.011  Score=50.40  Aligned_cols=49  Identities=20%  Similarity=0.430  Sum_probs=38.1

Q ss_pred             CCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 014068          232 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  291 (431)
Q Consensus       232 ~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I  291 (431)
                      ....-.|.+|++.........|||.+|..|+..+-...           ...||+||.+|
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-----------~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG-----------PQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS-----------CEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC-----------CCCCCCCCCcc
Confidence            34456799999987777778999999999999875321           13599999876

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=92.60  E-value=0.026  Score=46.67  Aligned_cols=49  Identities=22%  Similarity=0.646  Sum_probs=36.9

Q ss_pred             CCCchhhhhhccccch-------hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          233 DDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       233 ~~~~~C~vcle~~~~v-------a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .....|.+|++..-..       ...+|||.+|..|+..+-...            ..||+||..|..
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~  125 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH  125 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC------------SBCTTTCCBCCG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC------------CCCCCCCCcCCh
Confidence            3456699999876553       677999999999988775432            259999988763

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=92.02  E-value=0.036  Score=44.72  Aligned_cols=46  Identities=30%  Similarity=0.510  Sum_probs=32.4

Q ss_pred             CCchhhhhhcccc------------------chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 014068          234 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  291 (431)
Q Consensus       234 ~~~~C~vcle~~~------------------~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I  291 (431)
                      ..+.|.||++...                  .+...+|+|.++..|+...-...            ..||+||...
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC------------SBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC------------CcCcCCCCcc
Confidence            3466888876532                  24557899999888888874332            2599999873

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=91.83  E-value=0.049  Score=47.52  Aligned_cols=53  Identities=17%  Similarity=0.440  Sum_probs=40.0

Q ss_pred             CCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccc
Q 014068          231 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  294 (431)
Q Consensus       231 ~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~  294 (431)
                      .....-.|.+|++........+|||.+|..|+..+-....           ..||.||..|..-
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLEN   66 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-----------CCCCCCccCcchh
Confidence            3444567999999877767789999999999988754321           1599999887653

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=91.21  E-value=0.043  Score=45.11  Aligned_cols=46  Identities=30%  Similarity=0.510  Sum_probs=0.9

Q ss_pred             CCchhhhhhcccc------------------chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 014068          234 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  291 (431)
Q Consensus       234 ~~~~C~vcle~~~------------------~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I  291 (431)
                      ..+.|.||++...                  .+...+|+|.++..|+...-...            ..||+||.+.
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~------------~~CP~Cr~~~  110 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREW  110 (117)
T ss_dssp             CC--------------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC------------CcCCCCCCee
Confidence            3478999987643                  23445899999999987764332            2599999873

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=90.19  E-value=0.037  Score=43.35  Aligned_cols=53  Identities=21%  Similarity=0.473  Sum_probs=34.9

Q ss_pred             CCchhhhhhccccc---hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcc--cccc
Q 014068          234 DADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG  290 (431)
Q Consensus       234 ~~~~C~vcle~~~~---va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~--Cr~~  290 (431)
                      ..-.|.||++....   +...+|||.+|..|+...-.... ..   +....+.||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i-~~---g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLI-KE---GLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHH-HH---CSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHh-hc---CCcccccCccccCCCC
Confidence            34569999987433   23348999999999987754321 11   1123478999  9976

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=90.09  E-value=0.061  Score=41.41  Aligned_cols=56  Identities=9%  Similarity=-0.131  Sum_probs=40.7

Q ss_pred             CCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCC
Q 014068          233 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  300 (431)
Q Consensus       233 ~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~  300 (431)
                      ...-.|.+|++-.-..+..+|||.+|-.|+...-...            ..||+||..+..-..+|..
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~~~l~pn~   67 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS------------PTDPFNRQMLTESMLEPVP   67 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCGGGCEECH
T ss_pred             chheECcccCchhcCCeECCCCCEECHHHHHHHHhcC------------CCCCCCcCCCChHhcchHH
Confidence            3445688999888887778899999888887775431            2599999887654444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=89.75  E-value=0.034  Score=52.18  Aligned_cols=58  Identities=9%  Similarity=-0.074  Sum_probs=42.7

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCCCc
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  302 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~~~  302 (431)
                      ..-.|.+|++-.-..+..+|||.+|-.|+...-....           ..||+||..+..-..+|+..+
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~-----------~~cP~~~~~~~~~~l~~n~~l  264 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-----------HFNPVTRSPLTQEQLIPNLAM  264 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-----------SSCTTTCCCCCGGGCEECHHH
T ss_pred             cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC-----------CCCcCCCCCCchhcCcccHHH
Confidence            3456899999988888899999998888877643311           139999998876555565444

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=88.03  E-value=0.054  Score=43.16  Aligned_cols=54  Identities=11%  Similarity=-0.116  Sum_probs=40.1

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCC
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  299 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~  299 (431)
                      ..-.|.+|++-.-..+..+|||.+|-.|+..+=..            ...||+||..+..-..+|.
T Consensus        28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~------------~~~cP~~~~~l~~~~L~pn   81 (100)
T 2kre_A           28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN------------SPTDPFNRQTLTESMLEPV   81 (100)
T ss_dssp             TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS------------CSBCSSSCCBCCTTSSEEC
T ss_pred             HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc------------CCCCCCCCCCCChhhceEC
Confidence            44568999998888888889999999998877432            1359999988765444444

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=86.74  E-value=0.097  Score=41.47  Aligned_cols=55  Identities=9%  Similarity=-0.041  Sum_probs=40.8

Q ss_pred             CCchhhhhhccccchhccCCC-hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCC
Q 014068          234 DADTCAVCLERACTVAAEGCR-HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  300 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~Cg-H~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~  300 (431)
                      ..-.|.+|++-.-..+..+|| |.+|-.|+..+=..            ...||+||..+..-..+|..
T Consensus        21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~------------~~~cP~~~~~l~~~~L~pn~   76 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS------------DQTDPFNRSPLTMDQIRPNT   76 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT------------SCBCTTTCSBCCTTTSEECH
T ss_pred             HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh------------CCCCCCCCCCCChhhceEcH
Confidence            345689999988888888999 99999998877432            12599999887654444543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.21  E-value=0.22  Score=37.81  Aligned_cols=56  Identities=21%  Similarity=0.436  Sum_probs=31.8

Q ss_pred             CCCCchhhhhhccc--cchhccCCC-----hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceec
Q 014068          232 SDDADTCAVCLERA--CTVAAEGCR-----HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  297 (431)
Q Consensus       232 ~~~~~~C~vcle~~--~~va~~~Cg-----H~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l  297 (431)
                      ....+.|.||++..  -.....+|+     |.+...|+..+-...+          ...||+||..+.--.++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~----------~~~CplCr~~~~~~~~~   74 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD----------TRCCELCKYEFIMETKL   74 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC----------CSBCSSSCCBCCCCCCS
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC----------CCCCCCCCCeeecCccc
Confidence            34557899999653  122346775     7774444443322211          13599999887644433

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=80.94  E-value=0.21  Score=44.08  Aligned_cols=58  Identities=10%  Similarity=-0.039  Sum_probs=42.3

Q ss_pred             CCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCCCc
Q 014068          234 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  302 (431)
Q Consensus       234 ~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~~~  302 (431)
                      ..-.|.+|++-.-..+..+|||.+|-.|+...-...       +   . .||+||..+..-..+|+..+
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~-------~---~-tcP~t~~~l~~~~L~pN~~L  162 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-------G---H-FDPVTRSPLTQDQLIPNLAM  162 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-------C---S-BCTTTCCBCCGGGCEECHHH
T ss_pred             HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC-------C---C-CCCCCcCCCChhhCcchHHH
Confidence            445688999888777788999999888888775432       1   1 49999988776555565444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	431
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-15
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	7e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-05

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.3 bits (228), Expect = 5e-21
 Identities = 50/191 (26%), Positives = 72/191 (37%), Gaps = 11/191 (5%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A R GH EV + LL  +  V        +T LH AA  GH   ++L++ +        
Sbjct: 38  HMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          V++                 G T LH+AA  G     +LLL+  A
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 156

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 180
           + +A   +          G TPLH A    NL   ++LL RG S  S   NG+ PL +A 
Sbjct: 157 HPNAAGKN----------GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 206

Query: 181 MWGRHWLEPLL 191
              +  +   L
Sbjct: 207 KQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 2e-17
 Identities = 49/207 (23%), Positives = 72/207 (34%), Gaps = 57/207 (27%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   GH  +V+ LL    +   ++     T LH AA  GH    + +           
Sbjct: 5   HVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYL----------- 52

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          +++K         VN  A    T LH AA  G+ + V+LLL+ +A
Sbjct: 53  ---------------LQNKAK-------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 90

Query: 121 NVSAVTFHYGTSMD-----------------------LIGAGSTPLHFAACGGNLKCCQV 157
           N +  T    T +                        +   G TPLH AA  G ++  ++
Sbjct: 91  NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 150

Query: 158 LLSRGASRMSLNCNGWLPLDVARMWGR 184
           LL R A   +   NG  PL VA     
Sbjct: 151 LLERDAHPNAAGKNGLTPLHVAVHHNN 177

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 3e-17
 Identities = 46/226 (20%), Positives = 77/226 (34%), Gaps = 34/226 (15%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A  + + ++V+ LL    +     + +G T LH AA    V   R ++     +    
Sbjct: 170 HVAVHHNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAES 228

Query: 61  VMNT---QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
           V       +    G    V     +       N     G+T LH+ A  G+     +L+ 
Sbjct: 229 VQGVTPLHLAAQEGHAEMVALLLSKQ---ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 118 LHANVSAVTFHYGTSMDLIGA-----------------------GSTPLHFAACGGNLKC 154
               V A T    T + +                          G +PLH AA  G+   
Sbjct: 286 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 345

Query: 155 CQVLLSRGASRMSLNCNGWLPLDVARMWGRH----WLEPLLAPSSD 196
             +LL  GAS   ++ +G  PL +A+  G       L+ +   +S 
Sbjct: 346 VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF 391

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 6e-17
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 97  ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 156
           +T LH+A+  G+   V+ LL   A+ +                 TPLH AA  G+ +  +
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVK----------VETPLHMAARAGHTEVAK 50

Query: 157 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
            LL   A   +   +   PL  A   G   +  LL
Sbjct: 51  YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 3e-15
 Identities = 34/155 (21%), Positives = 51/155 (32%), Gaps = 43/155 (27%)

Query: 32  TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 91
           T LH A+  GH+  ++ ++                          +            N 
Sbjct: 2   TPLHVASFMGHLPIVKNLL--------------------------QRGAS-------PNV 28

Query: 92  AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 151
           +     T LHMAA  G+ +  + LL   A V+A                TPLH AA  G+
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD----------DQTPLHCAARIGH 78

Query: 152 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
               ++LL   A+       G  PL +A   G   
Sbjct: 79  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 113

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 34/126 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A  YG+ ++V+ LL  + +V       G + LH AA  GH   + L++          
Sbjct: 302 HVASHYGNIKLVKFLLQHQADVNAKTK-LGYSPLHQAAQQGHTDIVTLLL---------- 350

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           K+           N+ +  G T L +A   GY     +L  +  
Sbjct: 351 ----------------KNGAS-------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 387

Query: 121 NVSAVT 126
             S V 
Sbjct: 388 ETSFVL 393

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 5e-20
 Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 1/187 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A +    ++VQ LL    NV   +   G T LH A        + L++      V  +
Sbjct: 10  IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK 69

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                         SVK      +    VN+    G TA   AA+ G    ++ L    A
Sbjct: 70  KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVA 179
           NV+           L   G+T L  AA  G+++  ++LL   GA   + +  G   L  A
Sbjct: 130 NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189

Query: 180 RMWGRHW 186
            +     
Sbjct: 190 LLSSDDS 196

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 1e-15
 Identities = 41/179 (22%), Positives = 60/179 (33%), Gaps = 25/179 (13%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADY---------LSGRTALHFAAVNGHVRCIRLVVA 51
           M+A  YG  + ++ L     NV                G TAL  AA  GHV  +++++ 
Sbjct: 110 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

Query: 52  DF---VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK--FVNKAADGGITALHMAALN 106
           +    V +      N  I        S         L     VN   + G T L +A   
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

Query: 107 GYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 164
            +   VQ LL+     ++               G T L  A      K  ++L  RGAS
Sbjct: 230 KHLGLVQRLLEQEHIEINDTDSD----------GKTALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 6e-10
 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 92  AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 151
           AA      L  A  N   D VQ LL+  ANV+      G          TPLH A     
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW---------TPLHNAVQMSR 51

Query: 152 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
               ++LL  GA  +    NG  P  +A + G   
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 17/124 (13%), Positives = 33/124 (26%), Gaps = 33/124 (26%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           + +       +   LL    +V       G+T L  A    H+  ++ ++          
Sbjct: 191 LSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLE--------- 240

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           +   +       +N     G TAL +A         +LL    A
Sbjct: 241 ----------------QEHIE-------INDTDSDGKTALLLAVELKLKKIAELLCKRGA 277

Query: 121 NVSA 124
           +   
Sbjct: 278 STDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 42/159 (26%)

Query: 28  LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 87
           +     L  A  N  V  ++ ++                      G++V  + +      
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLE--------------------GGANVNFQEE------ 36

Query: 88  FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
                 +GG T LH A      D V+LLL   A+      +  T              AA
Sbjct: 37  ------EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF----------LLAA 80

Query: 148 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
             G++K  ++ LS+GA     +  G+     A ++G+  
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 8e-18
 Identities = 49/214 (22%), Positives = 75/214 (35%), Gaps = 25/214 (11%)

Query: 2   QACRYGHWEVVQTLLL-FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
                G  E ++  +L  +   TR D    RTALH+A   GH   +  ++   VP    +
Sbjct: 9   NLAYSGKLEELKESILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 67

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                           +           VN     G T LH AA     +   +LL+  A
Sbjct: 68  DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA 127

Query: 121 NVSAVTFHYGTSMDLIGA-----------------------GSTPLHFAACGGNLKCCQV 157
           N  A   +  T+M    A                       G+TPLH A     ++  ++
Sbjct: 128 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 187

Query: 158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           L+S+GAS    N     PL VA+      L+ ++
Sbjct: 188 LVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 33/160 (20%), Positives = 51/160 (31%), Gaps = 14/160 (8%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPF 59
             A   G  E+V+ LL     V   +  +G T LH+AA          L+     P    
Sbjct: 75  HIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 133

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
               T +      G+ +K            N     G T LH+A      +  +LL+   
Sbjct: 134 HYEATAMHRAAAKGN-LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 192

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 159
           A++                  TPL  A  GG     + ++
Sbjct: 193 ASIYIENKE----------EKTPLQVAK-GGLGLILKRMV 221

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 73.0 bits (178), Expect = 7e-15
 Identities = 23/185 (12%), Positives = 38/185 (20%), Gaps = 42/185 (22%)

Query: 10  EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 69
              +       +  +            AA+ G    +  +                    
Sbjct: 71  HYNRNAKQLWSDAHKKGI-KSEVICFVAAITGCSSALDTLC------------------- 110

Query: 70  RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHY 129
                 + S          V         A  +AA NG+   +  L +L           
Sbjct: 111 ----LLLTSDEI-------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 159

Query: 130 GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA---SRMSLNCNGWLPLDVARMWGRHW 186
                           AA  G+L     L        + M    N +     A   G H 
Sbjct: 160 E--------NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN 211

Query: 187 LEPLL 191
           +   L
Sbjct: 212 VINFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.5 bits (161), Expect = 1e-12
 Identities = 23/162 (14%), Positives = 40/162 (24%), Gaps = 27/162 (16%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR--LVVADFVPSVP 58
             A   GH  V+  LL     +          A       G            + +  + 
Sbjct: 202 WAAVGRGHHNVINFLLDCPVML--------AYAEIHEFEYGEKYVNPFIARHVNRLKEMH 253

Query: 59  FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                +  +G                ++K         +  L         D ++ LL +
Sbjct: 254 DAFKLSNPDGV------------FDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSI 301

Query: 119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
               +           + G  +  L  A   GN   C +LLS
Sbjct: 302 PGIKALAPTA-----TIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.5 bits (156), Expect = 5e-12
 Identities = 21/159 (13%), Positives = 34/159 (21%), Gaps = 17/159 (10%)

Query: 88  FVNKAADGGITALHMAALNGYFD---CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 144
             +K          +AA+ G       + LLL     V  +                   
Sbjct: 82  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE----------NYQAFR 131

Query: 145 FAACGGNLKCCQVLLSRGASRMSLNCN--GWLPL-DVARMWGRHWLEPLL-APSSDAVMP 200
            AA  G+L     L     + +        +      A     H L  L     ++A   
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 191

Query: 201 RFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCA 239
               + Y                 L         A+   
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 230

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.4 bits (153), Expect = 1e-11
 Identities = 28/237 (11%), Positives = 54/237 (22%), Gaps = 53/237 (22%)

Query: 1   MQACRYGHWEVVQT---LLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFV 54
             A   G    + T   LL     V          A   AA NGH+  +  +       +
Sbjct: 95  FVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEI 153

Query: 55  PSVPFEVMNT--QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 112
            ++         ++  + G    +   C+ +         A+        A   G+ + +
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 113 QLLLDLHANVS------------AVTFHYGTSMDLIGAGSTPLHFAACG----------- 149
             LLD    ++             V       ++ +         +              
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 273

Query: 150 ----------------GNLKCCQVLLSRGASRMSLNCN-----GWLPLDVARMWGRH 185
                             L   + LLS    +               L +A   G  
Sbjct: 274 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 55.3 bits (132), Expect = 4e-09
 Identities = 16/120 (13%), Positives = 27/120 (22%), Gaps = 10/120 (8%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           +    YG   V   +                 A   +  +G      LV         + 
Sbjct: 228 IHEFEYGEKYVNPFIA-----RHVNRLKEMHDAFKLSNPDGV---FDLVTKSECLQGFYM 279

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG--GITALHMAALNGYFDCVQLLLDL 118
           + N     D      ++       +      A         L +A   G      LLL +
Sbjct: 280 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 33/200 (16%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
                  + E+V+ L+    N    D   G + L  A  + +           +  +   
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVNNYDSG-TFEALLDYLYPC 169

Query: 61  VMNT------------QIEGDRGDGSSVKSKCDQ------SALSKFVNKAADGGITALHM 102
           ++                 G  G  ++ K   D          ++ +    +   +  + 
Sbjct: 170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 229

Query: 103 AALNGYFDCVQLLLDLH---ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 159
                    ++ L         ++A   +          G T L+ AA  GN+     LL
Sbjct: 230 KNGERKDSILENLDLKWIIANMLNAQDSN----------GDTCLNIAARLGNISIVDALL 279

Query: 160 SRGASRMSLNCNGWLPLDVA 179
             GA     N +G  P+D  
Sbjct: 280 DYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 74  SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 133
                    +  S   ++         H++  +   +      +   N++     +G   
Sbjct: 51  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--- 107

Query: 134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
                 +TPLH+     NL+  + L+  G++R+  +  G   L  A     ++
Sbjct: 108 ------NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 154

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 38
             A R G+  +V  LL +  +   A+  SG   + F A
Sbjct: 264 NIAARLGNISIVDALLDYGADPFIANK-SGLRPVDFGA 300

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.8 bits (164), Expect = 2e-13
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 88  FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
              + A  G TALH+AA  GY + ++LL+    +V+   +           G TPLH AA
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAA 240

Query: 148 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA 192
             G  + C++L+       ++N  G    DVA      +LE L  
Sbjct: 241 HWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.3 bits (142), Expect = 2e-10
 Identities = 39/201 (19%), Positives = 66/201 (32%), Gaps = 18/201 (8%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           + AC  G  E V  LL    ++  A+   G TALH A ++ +V  ++ +V +       +
Sbjct: 45  LAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                          +       +    V      G T L +A      + +Q  ++   
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 121 NVSAVTFHYGTSMDLIGA-----------------GSTPLHFAACGGNLKCCQVLLSRGA 163
                       + L  A                 G T LH AA  G  +  ++L+    
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 164 SRMSLNCNGWLPLDVARMWGR 184
                + +GW PL  A  WG+
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGK 244

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 91  KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 150
           K           A  +G  + V  LL+  A+++               G T LH A    
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD----------GLTALHQACIDD 84

Query: 151 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           N+   + L+  GA+    +  GW+PL  A   G   +   L
Sbjct: 85  NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 12/69 (17%), Positives = 20/69 (28%)

Query: 139 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV 198
                  A   G+ +    LL RGA     N +G   L  A +     +   L  +   +
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 199 MPRFHPSNY 207
               +    
Sbjct: 100 NQPDNEGWI 108

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVN 40
             A  +G  E  + L+   C++   +   G+TA   A  +
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNK-VGQTAFDVADED 275

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 24/118 (20%), Positives = 38/118 (32%), Gaps = 38/118 (32%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G+ EV++ L+  R +V       G T LH AA  G     R++           
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRIL----------- 251

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 118
                          V++ CD       +      G TA  +A  +     +  L +L
Sbjct: 252 ---------------VENLCD-------MEAVNKVGQTAFDVADED----ILGYLEEL 283

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 4e-12
 Identities = 37/225 (16%), Positives = 57/225 (25%), Gaps = 40/225 (17%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLS--GRTALHFAAVNGHVRCIRLVVADFVPSVP 58
             A  + H   +  LL F       D  +  G+TALH AA+ G    +  + A     + 
Sbjct: 14  HLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73

Query: 59  FEVMNTQIEGD--------------RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 104
            E                       +   S  +   D                 A   + 
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 105 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG------------------------AGS 140
            N   +      D    + A  +   T + +                           G 
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR 193

Query: 141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
           TPLH A         ++LL  GA   +    G  PL  A +    
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 2e-11
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G TALH+A ++ +   +  LL   A    +             G T LH AA  G     
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-------GQTALHLAAILGEASTV 61

Query: 156 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 191
           + L + GA  +     G   L +A     H    +L
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 5e-10
 Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 24/177 (13%)

Query: 1   MQACRYGHWEVVQTLLLFRCN---------VTRADYLSGRTALHFAAVNGHVRCIRLVVA 51
             ACR         LL  R +         +T++   +  T+   AAV+           
Sbjct: 83  HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142

Query: 52  DFV-----PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 106
                           +T +        +   +  + A +         G T LH+A   
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 107 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 163
                ++LLL   A+ +A  +           G TPL  A    N    ++L + GA
Sbjct: 203 QAASVLELLLKAGADPTARMYG----------GRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 4e-08
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 40/146 (27%)

Query: 30  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 89
           G TALH A ++ H   +  ++                                SA  +++
Sbjct: 9   GDTALHLAVIHQHEPFLDFLL------------------------------GFSAGHEYL 38

Query: 90  NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           +   D G TALH+AA+ G    V+ L    A V        T++          H A   
Sbjct: 39  DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL----------HLACRV 88

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLP 175
               C  VLL    S      + +L 
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLT 114

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 40/200 (20%), Positives = 66/200 (33%), Gaps = 24/200 (12%)

Query: 10  EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPFEVMNTQIEG 68
           +V+  LL     +      +G T+LH AA        + L+ A    +       T +  
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 69  DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 128
                +    +      +  +N     G T L +AA       V+ L+   A+++A    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNS 122

Query: 129 YGTSMDLIGAG-----------------------STPLHFAACGGNLKCCQVLLSRGASR 165
             T++    A                         TPL  AA  G+ +  + LL   A+R
Sbjct: 123 GKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR 182

Query: 166 MSLNCNGWLPLDVARMWGRH 185
              +    LP DVA     H
Sbjct: 183 EITDHMDRLPRDVASERLHH 202

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 26/191 (13%), Positives = 41/191 (21%), Gaps = 43/191 (22%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A R+   +  + LL    +    D           A +       L+           
Sbjct: 28  HLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARM 87

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF----------- 109
              T         +      D       +N A + G TALH AA                
Sbjct: 88  HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA 147

Query: 110 ----------------------DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 147
                                 +  + LLD  AN                    P   A+
Sbjct: 148 NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHM----------DRLPRDVAS 197

Query: 148 CGGNLKCCQVL 158
              +    ++L
Sbjct: 198 ERLHHDIVRLL 208

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 7e-09
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G T + +AA  G  + V  L+   A+V AV               T    A    +    
Sbjct: 221 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT----------DHTARQLAQANNHHNIV 270

Query: 156 QVLL 159
            +  
Sbjct: 271 DIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 89  VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 148
            +     G TALH AA       V+ L+    +        G          TP+  AA 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK---------TPIMLAAQ 230

Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
            G ++    L+ +GAS  +++        +A+    H
Sbjct: 231 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH 267

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.8 bits (112), Expect = 9e-07
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRL 48
           M A + G  EVV  L+    +V   D  +  TA   A  N H   + +
Sbjct: 226 MLAAQEGRIEVVMYLIQQGASVEAVDA-TDHTARQLAQANNHHNIVDI 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 20/172 (11%)

Query: 98  TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
             LH  A  G +   + +     N+                  T LH+ A   + +  + 
Sbjct: 4   IKLHTEA-AGSYAITEPITRESVNIIDPRH-----------NRTVLHWIASNSSAEKSED 51

Query: 158 LL--------SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLS 209
           L+        + GA   +++C+   PL +A +  R  L   L  +               
Sbjct: 52  LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 111

Query: 210 LPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRC 261
               +  +      +L+ST    D  +     +     VA    R ++    
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 163

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 14/116 (12%), Positives = 32/116 (27%), Gaps = 33/116 (28%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A +  +  +V+ L+  + +        G+T +  AA  G +  +  ++          
Sbjct: 192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI---------- 241

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 116
                           +           V        TA  +A  N + + V +  
Sbjct: 242 ----------------QQGAS-------VEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 7  GHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 54
          G + + + +   R +V   D    RT LH+ A N        ++    
Sbjct: 12 GSYAITEPIT--RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 4/113 (3%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKC 154
             T LH  A N   +  + L+   A         G  ++ +    +TPL  A      + 
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECI---AAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 155 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNY 207
              L+  GA     N +    L  A       +   +  S+            
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 142

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 9e-09
 Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 30/209 (14%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA-----DFVP 55
            QAC    +  VQ LL  + ++       GR  LH++           +++     +   
Sbjct: 5   HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 64

Query: 56  SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 115
                               V        L   +NK  + G+T LH+A    +F+  Q L
Sbjct: 65  YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL 124

Query: 116 LD---------------LHANVSAVTFHYGTSMDLIG---------AGSTPLHFAACGGN 151
           ++               LH   S  +      +  +G          G TPL  A   G+
Sbjct: 125 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 184

Query: 152 LKCCQVLLSR-GASRMSLNCNGWLPLDVA 179
                +L+ + GA    ++  G    DVA
Sbjct: 185 GDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 98  TALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 156
             LH A +   F  VQ LL    + +                G  PLH++      +   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQD----------GRIPLHWSVSFQAHEITS 51

Query: 157 VLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
            LLS+  +    +           +     
Sbjct: 52  FLLSKMENVNLDDYPDDSGWTPFHIACSVG 81

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 14/77 (18%)

Query: 88  FVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFA 146
            VN     G T L  A   G+ D   LL++ + A    V             G+     A
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK----------GAKAEDVA 213

Query: 147 ACGGNLKCCQVLLSRGA 163
               N +  +  L+   
Sbjct: 214 L---NEQVKKFFLNNVV 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 9e-09
 Identities = 45/216 (20%), Positives = 70/216 (32%), Gaps = 33/216 (15%)

Query: 1   MQACRYGHWEVVQTLLLFR----CNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS 56
             A   G+   V  L+         +   +    +T LH A +      +RL+V      
Sbjct: 8   HIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 57  VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG----GITALHMAALNGYFDCV 112
           +  +           +  S          +       +     G+TALH+A      + V
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 126

Query: 113 QLLLDLHANVSAVTFHYGTSMDLIGA------------------------GSTPLHFAAC 148
           QLLL+  A++ AV    G S  +                           GS+ LH A+ 
Sbjct: 127 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 186

Query: 149 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 184
            G L   + L+  GA     NC+   PL VAR    
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 94  DGGITALHMAALNGYFDCVQLLLDLH----ANVSAVTFHYGTSMDLIGAGSTPLHFAACG 149
           + G T LH+A + G    V  L++L       +                  TPLH A   
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL----------RQTPLHLAVIT 50

Query: 150 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 185
                 ++L++ GAS M+L+ +G     +A      
Sbjct: 51  TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 86

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 139 GSTPLHFAACGGNLKCCQVLLS----RGASRMSLNCNGWLPLDVARMWGRHW 186
           G TPLH A   GNL     L++     G      N     PL +A +     
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 54

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 154
           G +ALH A+  G    V+ L+   A+ S    H            TPL  A     +  
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCH----------NDTPLMVARSRRVIDI 225

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 7e-08
 Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 8/136 (5%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLS-----GRTALHFAAVN---GHVRCIRLVVAD 52
            +A +      +        ++T    L+       TALH A  +     +  +  +V +
Sbjct: 11  CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN 70

Query: 53  FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 112
                      +          + +           +  A + G T L +A    +  C 
Sbjct: 71  SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 130

Query: 113 QLLLDLHANVSAVTFH 128
           +LL    +       H
Sbjct: 131 ELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 26/173 (15%), Positives = 46/173 (26%), Gaps = 53/173 (30%)

Query: 25  ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 84
           AD  +   +L  A     +  +    AD                    G  +  K     
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYAD--------------------GVDLTEKIP--- 37

Query: 85  LSKFVNKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA--- 138
               +    +   TALH+A  +        V  L+    N+   T    T++        
Sbjct: 38  ----LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 93

Query: 139 --------------------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 171
                               G TPL  A    +  C ++L    + R + + +
Sbjct: 94  AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 9/99 (9%)

Query: 93  ADGG--ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA--- 147
           AD    + +L  A        +        +++                 T LH A    
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEP----DETALHLAVRSV 56

Query: 148 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
              +L     L+    +       G   L    +     
Sbjct: 57  DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 95

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 4e-07
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 20/201 (9%)

Query: 1   MQACRYGHWEVVQTLLLF----RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS 56
             A  +    +   ++         +   +    +T LH A +         ++      
Sbjct: 7   HLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDP 65

Query: 57  VPFEVMNTQIEGDRGDGSSVK------SKCDQSALSKFVNKAADGGITALHMAALNGYFD 110
              +           +   +         C    L   +      G T LH+A+++GY  
Sbjct: 66  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 125

Query: 111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 170
            V+LL+ L A+V+A     G          T LH A    N     +LL  GA    +  
Sbjct: 126 IVELLVSLGADVNAQEPCNG---------RTALHLAVDLQNPDLVSLLLKCGADVNRVTY 176

Query: 171 NGWLPLDVARMWGRHWLEPLL 191
            G+ P  +        ++  L
Sbjct: 177 QGYSPYQLTWGRPSTRIQQQL 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 5e-05
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 96  GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 155
           G TALH+A      D V LLL   A+V+ VT+           G +P        + +  
Sbjct: 145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQ 194

Query: 156 QVLLSRGASRMSLN 169
           Q L       + + 
Sbjct: 195 QQLGQLTLENLQML 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 96  GITALHMAALNGYFDC----VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 151
           G + LH+A ++         ++ +    A ++                 TPLH A     
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL----------QQTPLHLAVITNQ 51

Query: 152 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 186
            +  + LL  G      +  G  PL +A   G   
Sbjct: 52  PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA 86

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 12/158 (7%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           ++A R G  + V+ L+      T      G + LH AA  GH     +++   V      
Sbjct: 7   LEAARAGQDDEVRILMANGAPFTTDWL--GTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
            ++                         VN      +TALH A  + + + V+LL+   A
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 158
           +V   +              T    +   GN    ++L
Sbjct: 125 DVHTQSKF----------CKTAFDISIDNGNEDLAEIL 152

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-06
 Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 7/132 (5%)

Query: 32  TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 91
             L  +++ G    ++ ++ +                +       +           VN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 92  AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 151
           A   G T LH AA        + L++  A V A+T+            +         G 
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ-------TAADKCEEMEEGY 115

Query: 152 LKCCQVLLSRGA 163
            +C Q L     
Sbjct: 116 TQCSQFLYGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 9e-06
 Identities = 14/124 (11%), Positives = 32/124 (25%), Gaps = 2/124 (1%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
           + +   G +++VQ ++    + +  +        +            LV      +    
Sbjct: 6   LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 65

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA--LHMAALNGYFDCVQLLLDL 118
              T +       +    K    + +           TA         GY  C Q L  +
Sbjct: 66  DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 125

Query: 119 HANV 122
              +
Sbjct: 126 QEKM 129

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 7e-06
 Identities = 27/162 (16%), Positives = 45/162 (27%), Gaps = 11/162 (6%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G  E + +LL    NV   +   GRTAL    +       RL++    P +   
Sbjct: 6   ASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMKLGNPEIARRLLLRGANPDLKDR 64

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 120
                I      G     +      +    +  +G +     A          L+    +
Sbjct: 65  TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 124

Query: 121 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 162
           NV                G T    A   G  +   ++ + G
Sbjct: 125 NVGHRNHK----------GDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 14/89 (15%), Positives = 28/89 (31%)

Query: 98  TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 157
             L  AA  G  + +  LL  + NV+A      T++ ++  G+  +              
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 158 LLSRGASRMSLNCNGWLPLDVARMWGRHW 186
             +  A        G+L      +  +  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQAD 91

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 6e-05
 Identities = 29/161 (18%), Positives = 46/161 (28%), Gaps = 14/161 (8%)

Query: 1   MQACRYGHWEVVQTLLL-FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF 59
             A   G  + V+ LL     +    +   G+TAL           + L+     P+V  
Sbjct: 7   SGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMMFGSTAIALELLKQGASPNVQD 65

Query: 60  EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 119
               + +      G     K         VN     G   +H+A   G+   V  L    
Sbjct: 66  TSGTSPVHDAARTGFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-E 123

Query: 120 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 160
           +++                G TPL  A   G      +L  
Sbjct: 124 SDLHRRDAR----------GLTPLELALQRGAQDLVDILQG 154

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 7e-05
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 1/117 (0%)

Query: 1   MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 60
             A   G  E V+ LL    N   A    GR  +    +        L++    P+    
Sbjct: 8   ATAAARGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCADP 66

Query: 61  VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 117
              T+   D      + +          ++     G   + +A   G+ D  + L  
Sbjct: 67  ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	431
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.85
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.84
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.82
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.82
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.06
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	96.43
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	96.34
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	96.29
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	96.16
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	95.94
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	95.78
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	95.77
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	93.41
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	92.94
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	92.92
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	92.8
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	91.46
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	90.12
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	84.73

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.4e-31  Score=247.61  Aligned_cols=187  Identities=22%  Similarity=0.197  Sum_probs=161.2

Q ss_pred             CEeeccCCHHHHHHHHHcCCC---CcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChh
Q 014068            1 MQACRYGHWEVVQTLLLFRCN---VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGS   74 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gad---i~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~   74 (431)
                      |+||.+|+.++|++||++|++   ++..+. .|.||||+|+..|+.+++++|+++++.   .+..+.+++++++..+..+
T Consensus        14 h~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~-~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~   92 (255)
T d1oy3d_          14 HLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT   92 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTSGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCcCC-CCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchH
Confidence            789999999999999999988   555666 899999999999999999999998764   3566889999999988887


Q ss_pred             hHHhhhhhhh--------------------------------------------hhhhhcccCCCCchHHHHHHHcCCHH
Q 014068           75 SVKSKCDQSA--------------------------------------------LSKFVNKAADGGITALHMAALNGYFD  110 (431)
Q Consensus        75 ~~~~~~~~~~--------------------------------------------~~~~in~~d~~G~TpLh~Aa~~g~~e  110 (431)
                      .+..++....                                            ....++.+|..|.||||+|+..|+.+
T Consensus        93 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~  172 (255)
T d1oy3d_          93 CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAE  172 (255)
T ss_dssp             HHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccc
Confidence            7766543210                                            01125778889999999999999999


Q ss_pred             HHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHH
Q 014068          111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL  190 (431)
Q Consensus       111 ~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~L  190 (431)
                      +|++|++++++.+..+..         .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus       173 ~v~~Ll~~~~~~~~~~~~---------~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         173 MVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (255)
T ss_dssp             HHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             cccchhcccccccccccc---------cccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999875533         49999999999999999999999999999999999999999999999999888


Q ss_pred             hcCCCCC
Q 014068          191 LAPSSDA  197 (431)
Q Consensus       191 L~~~a~~  197 (431)
                      |.+.+..
T Consensus       244 Ll~~Ga~  250 (255)
T d1oy3d_         244 LRAHGAP  250 (255)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            8775443

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=234.56  Aligned_cols=196  Identities=28%  Similarity=0.282  Sum_probs=168.6

Q ss_pred             EeeccCCHHHHHHHHH-cCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            2 QACRYGHWEVVQTLLL-FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~-~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      .+|..|+.+.|+.+|+ .+.+++.+|. .|+||||+|+..|+.+++++|+..+..   ......+..+.+...+..+.+.
T Consensus         9 ~~a~~G~~~~v~~~l~~~~~~~~~~D~-~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (223)
T d1uoha_           9 NLAYSGKLEELKESILADKSLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVK   87 (223)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhCCCcCcCcCC-CCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhH
Confidence            4688999999977775 4678888887 999999999999999999999985543   3445667888888889988888


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++...   ..++.+|.+|.||||+|+.+|+.+++++|+++|++++..+..          |.||||+|+..++.+++++
T Consensus        88 ~Ll~~~---~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~----------~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          88 ALLGKG---AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY----------EATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             HHHHTT---CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHH
T ss_pred             HHhccC---ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCC----------CCccchhhhhcCCcchhhh
Confidence            777654   357899999999999999999999999999999999998866          9999999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCCCCCCchhhhhHHHHH
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHPSNYLSLPLLSVLNVA  219 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~~~~~~~~l~t~l~~A  219 (431)
                      |++.|++++.+|.+|+||||+|+..|+.+++++| ..+++++..+..+.        |++++|
T Consensus       155 L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~--------tpl~~A  209 (223)
T d1uoha_         155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEK--------TPLQVA  209 (223)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC--------CHHHHC
T ss_pred             hccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCC--------CHHHHH
Confidence            9999999999999999999999999999997655 46777776554433        667766

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-27  Score=226.56  Aligned_cols=224  Identities=21%  Similarity=0.114  Sum_probs=162.8

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCC---CCc----------------
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP---FEV----------------   61 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~---~~~----------------   61 (431)
                      |.|++.|++++|++||++|+++|.++...|+||||+|+..|+.+++++|++.+.....   ...                
T Consensus        10 ~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (285)
T d1wdya_          10 IKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK   89 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccc
Confidence            5799999999999999999999988876899999999999999999999976553221   122                


Q ss_pred             -----------------chhhHhhhcCChhhHHhhhhhhh-------hhhhhcccCCCCchHHHHHHHcCCHHHHHHHHH
Q 014068           62 -----------------MNTQIEGDRGDGSSVKSKCDQSA-------LSKFVNKAADGGITALHMAALNGYFDCVQLLLD  117 (431)
Q Consensus        62 -----------------~~l~~a~~~~~~~~~~~~~~~~~-------~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~  117 (431)
                                       +.++.++..+........+....       ........+..|.||||+|+.+|+.+++++|++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  169 (285)
T d1wdya_          90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHh
Confidence                             23333333333333322222110       111233445578999999999999999999996


Q ss_pred             C-CCCCCcccccCCCccccCCCCCcHHHHHHh----cCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          118 L-HANVSAVTFHYGTSMDLIGAGSTPLHFAAC----GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       118 ~-Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~----~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                      + |++++..+..          |.++++.+..    .+..+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus       170 ~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         170 EMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             TSCCCTTCCCTT----------SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCcccccCC----------CCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            5 8899888865          7777776544    33456899999999999999999999999999999999987775


Q ss_pred             C--CCCCCCCCCCCCCCCchhhhhHHHHHHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCC
Q 014068          193 P--SSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNN  270 (431)
Q Consensus       193 ~--~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n  270 (431)
                      .  +.+++..+..+.        |+|++|.+                              . ||..++++|++.||++|
T Consensus       240 ~~~g~din~~d~~G~--------TpL~~A~~------------------------------~-~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         240 EQEHIEINDTDSDGK--------TALLLAVE------------------------------L-KLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HSSSCCTTCCCTTSC--------CHHHHHHH------------------------------T-TCHHHHHHHHHHSSCSC
T ss_pred             HcCCCCCcCCCCCCC--------CHHHHHHH------------------------------c-CCHHHHHHHHHCCCCCC
Confidence            3  445444322222        45555554                              3 67778999999999998


Q ss_pred             CCC
Q 014068          271 IPS  273 (431)
Q Consensus       271 ~~~  273 (431)
                      ..+
T Consensus       281 ~~d  283 (285)
T d1wdya_         281 CGD  283 (285)
T ss_dssp             CSS
T ss_pred             ccc
Confidence            765

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-28  Score=241.02  Aligned_cols=272  Identities=22%  Similarity=0.194  Sum_probs=208.7

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+||..|+.++|++||++|++++..|. .|+||||+|+..|+.++|++|+++|++.   +..+.+++++++..+....+.
T Consensus         5 ~~Aa~~g~~~~v~~Ll~~g~~in~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~   83 (408)
T d1n11a_           5 HVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK   83 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCSSS-CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            789999999999999999999999997 9999999999999999999999988754   456778999988888877765


Q ss_pred             hhhhhh---------------------------------------------------------------hhhhhhcccCC
Q 014068           78 SKCDQS---------------------------------------------------------------ALSKFVNKAAD   94 (431)
Q Consensus        78 ~~~~~~---------------------------------------------------------------~~~~~in~~d~   94 (431)
                      .++...                                                               .....++..+.
T Consensus        84 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~  163 (408)
T d1n11a_          84 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK  163 (408)
T ss_dssp             HHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             HHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCC
Confidence            543210                                                               00112566777


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcccc-----------------------CCCCCcHHHHHHhcCC
Q 014068           95 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL-----------------------IGAGSTPLHFAACGGN  151 (431)
Q Consensus        95 ~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~-----------------------~~~G~TpLh~Aa~~g~  151 (431)
                      +|.+|||+|+..|+.+++++|+++|++++..+....++++.                       ...|.||||+|+..++
T Consensus       164 ~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~  243 (408)
T d1n11a_         164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  243 (408)
T ss_dssp             SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCc
Confidence            89999999999999999999999999998776554333221                       1468899999999999


Q ss_pred             HHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccccc
Q 014068          152 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTS  230 (431)
Q Consensus       152 ~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~a  230 (431)
                      .++++++++.+.+++..|..|.|||+.|+..++.+++++|. .+++++......        .++++++...+....+..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~--------~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG--------YTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSC--------CCHHHHHHHSSCSHHHHH
T ss_pred             HhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccc--------cccchhhcccCcceeeee
Confidence            99999999999999999999999999999999999976665 466655443322        266777777765543321


Q ss_pred             ---CCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q 014068          231 ---SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSI  282 (431)
Q Consensus       231 ---~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~  282 (431)
                         .....+.-..--.+++..|+.. |+..+++.|++.||+++..+..+.+|.+.
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~-g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~  369 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQ-GHTDIVTLLLKNGASPNEVSSDGTTPLAI  369 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCCCSSSCCHHHH
T ss_pred             eccccccccccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence               0000000011124677888887 89999999999999999888777766544

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=2e-28  Score=221.72  Aligned_cols=173  Identities=25%  Similarity=0.213  Sum_probs=142.0

Q ss_pred             HHHHHHHHHcCCCCccc-CCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHHhhhhh--
Q 014068            9 WEVVQTLLLFRCNVTRA-DYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQ--   82 (431)
Q Consensus         9 ~evVk~LL~~gadi~~~-d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~~~~~~--   82 (431)
                      .|+|++||++|+|++.. |. +|.||||+||+.|+.+++++|++.+...   +..+.+..+.+...............  
T Consensus         2 ~~~v~~Ll~~g~din~~~d~-~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDK-TGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCC-CCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            58999999999999874 65 8999999999999999999999977643   33344555555444433322211111  


Q ss_pred             -----------------------------hhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcc
Q 014068           83 -----------------------------SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM  133 (431)
Q Consensus        83 -----------------------------~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~  133 (431)
                                                   ......++.++..|.|||++|+.+|..+++++|++.+++++..|..     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~-----  155 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK-----  155 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-----
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccc-----
Confidence                                         0112235778889999999999999999999999999999998876     


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       134 ~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                           |.||||+|+..|+.++|++||++|+|++.+|..|+||||+|+++|+.+|++||.
T Consensus       156 -----g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL~  209 (209)
T d1ot8a_         156 -----DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD  209 (209)
T ss_dssp             -----CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             -----cccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhcC
Confidence                 999999999999999999999999999999999999999999999999999984

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=1.3e-28  Score=231.95  Aligned_cols=182  Identities=18%  Similarity=0.163  Sum_probs=153.8

Q ss_pred             CEeeccCCHHHHHHH--------HHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhh
Q 014068            1 MQACRYGHWEVVQTL--------LLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGD   69 (431)
Q Consensus         1 H~Aa~~G~~evVk~L--------L~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~   69 (431)
                      |+||.+|+.++|++|        +++|+|+|.+|. +|+||||+|+..|+.++|++|+++|++.   +..+.++++.+..
T Consensus        38 h~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~-~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~  116 (277)
T d2fo1e1          38 HWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA  116 (277)
T ss_dssp             HHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC-CCCeeeccccccccccccccccccccccccccccccccccchhh
Confidence            789999999999877        567999999997 9999999999999999999999987754   4467888888888


Q ss_pred             cCChhhHHhhhhhhhhh--------------------------------------------hhhcccCCCCchHHHHHHH
Q 014068           70 RGDGSSVKSKCDQSALS--------------------------------------------KFVNKAADGGITALHMAAL  105 (431)
Q Consensus        70 ~~~~~~~~~~~~~~~~~--------------------------------------------~~in~~d~~G~TpLh~Aa~  105 (431)
                      .+.......+.......                                            ...+..+..|.||||+++.
T Consensus       117 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~  196 (277)
T d2fo1e1         117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ  196 (277)
T ss_dssp             TTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS
T ss_pred             hcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccc
Confidence            77766554443322110                                            0134455679999999999


Q ss_pred             cCCHHHHHHHH-HCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCc
Q 014068          106 NGYFDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR  184 (431)
Q Consensus       106 ~g~~e~VklLL-~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~  184 (431)
                      .++.+++++++ ..+.+++..|..          |+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|++.|+
T Consensus       197 ~~~~~~~~~~l~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         197 VSNMPIVKYLVGEKGSNKDKQDED----------GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  266 (277)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             cccccccccccccccccccccCCC----------CCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC
Confidence            99999999755 678888888866          9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 014068          185 HWLEPLLAP  193 (431)
Q Consensus       185 ~~v~~LL~~  193 (431)
                      .+++++|.+
T Consensus       267 ~~iv~lL~~  275 (277)
T d2fo1e1         267 HNIVDIFDR  275 (277)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999999874

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=4e-28  Score=230.97  Aligned_cols=199  Identities=22%  Similarity=0.238  Sum_probs=160.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+||..|+.++|++||++|+|+|..|. +|+||||+|+..|+.++|++|++++...   ...+.++++.++..+..+.+.
T Consensus        45 ~~A~~~G~~~~v~~Ll~~Gadvn~~d~-~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~  123 (291)
T d1s70b_          45 LAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE  123 (291)
T ss_dssp             HHHHHHTCHHHHHHHHHHCCCTTCBCT-TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCccCC-CCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhh
Confidence            468999999999999999999999997 9999999999999999999999877643   345677889999999888888


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCccccc----------------CCCccccCCCCC
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFH----------------YGTSMDLIGAGS  140 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~-Gadvn~~d~~----------------~~~~~~~~~~G~  140 (431)
                      .++....   ..+..|..|.+++++|+..++.+.++.|+.. +.++......                ..........|.
T Consensus       124 ~l~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  200 (291)
T d1s70b_         124 YLISQGA---HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGG  200 (291)
T ss_dssp             HHHHTTC---CTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCC
T ss_pred             cccccCc---ccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCC
Confidence            7776543   3566788899999999999999999988854 3333211100                000111124599


Q ss_pred             cHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCCC
Q 014068          141 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFH  203 (431)
Q Consensus       141 TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~~  203 (431)
                      ||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+ .|++++..+..
T Consensus       201 t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~  264 (291)
T d1s70b_         201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKV  264 (291)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence            9999999999999999999999999999999999999999999999986665 56777665433

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-27  Score=219.23  Aligned_cols=179  Identities=23%  Similarity=0.266  Sum_probs=164.2

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+||..|+.+++++|++.+.+....+. .+.+++++|+..|+.+++++|++++..   .+..+.+++++++..+..+.++
T Consensus        42 h~Aa~~g~~e~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~  120 (223)
T d1uoha_          42 HWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV  120 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCT-TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHhhhhcccccccccccccccccc-cccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHH
Confidence            789999999999999999999888887 899999999999999999999987654   4566789999999999999999


Q ss_pred             hhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHH
Q 014068           78 SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  157 (431)
Q Consensus        78 ~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivkl  157 (431)
                      .++..+   ..++.++..|.||||+|+..++.+++++|++.|.+++..|..          |+||||+|+..|+.++|++
T Consensus       121 ~Ll~~g---~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~----------g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         121 MLLEGG---ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE----------GNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHHTT---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------CCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHCC---CCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCC----------CCceeccccccCcHHHHHH
Confidence            887654   347889999999999999999999999999999999999976          9999999999999999999


Q ss_pred             HHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          158 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       158 LL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      |+++|+|++.+|.+|+||||+|. .|+.+|+++|++|
T Consensus       188 LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~~  223 (223)
T d1uoha_         188 LVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVEG  223 (223)
T ss_dssp             HHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHCC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccCC
Confidence            99999999999999999999984 7899999888765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=208.40  Aligned_cols=148  Identities=22%  Similarity=0.270  Sum_probs=136.2

Q ss_pred             CEeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhh
Q 014068            1 MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSK   79 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~   79 (431)
                      |.||..|++++|++||+. +++++..|. .|+||||+|+ .|+.+++++|++++..                        
T Consensus         7 ~~Aa~~g~~~~vk~lL~~~~~~~n~~d~-~g~t~L~~A~-~~~~~~v~~Ll~~~~~------------------------   60 (156)
T d1bd8a_           7 SGAAARGDVQEVRRLLHRELVHPDALNR-FGKTALQVMM-FGSTAIALELLKQGAS------------------------   60 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCCTTCCCT-TSCCHHHHSC-TTCHHHHHHHHHTTCC------------------------
T ss_pred             HHHHHcCCHHHHHHHHHhCCCCCCccCC-CCCccccccc-cccccccccccccccc------------------------
Confidence            468999999999999986 789999997 9999999987 5899999999987554                        


Q ss_pred             hhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           80 CDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        80 ~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                               ++..+..|.+||++|+..++.+++++++++|++++.++..          |.||||+|+..|+.+++++|+
T Consensus        61 ---------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~----------~~t~L~~A~~~~~~~i~~~L~  121 (156)
T d1bd8a_          61 ---------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT----------GALPIHLAVQEGHTAVVSFLA  121 (156)
T ss_dssp             ---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHHTCHHHHHHHH
T ss_pred             ---------ccccccccccccccccccccccccccccccccccccccCC----------CCeeecccccccccccccccc
Confidence                     6777888999999999999999999999999999998866          999999999999999999887


Q ss_pred             HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          160 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       160 ~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                       .|++++.+|.+|+||||+|+.+|+.+++++|.++
T Consensus       122 -~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         122 -AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             -TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             -ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence             7899999999999999999999999999999764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.4e-27  Score=217.66  Aligned_cols=190  Identities=25%  Similarity=0.267  Sum_probs=162.8

Q ss_pred             CEeeccCCHHHHHHHHHc-CCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC------CCCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHWEVVQTLLLF-RCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP------SVPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~-gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~------~~~~~~~~l~~a~~~~~~   73 (431)
                      |+||+.|+.++|+.||+. +.+++.+|. +|+||||+|+..|+.+++++|+++++.      .+..+.++++++...+..
T Consensus         5 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~   83 (229)
T d1ixva_           5 HQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL   83 (229)
T ss_dssp             HHHHHHTCHHHHHHHHHHCGGGTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCC-CCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccc
Confidence            789999999999999985 578888887 999999999999999999999998764      344567888888888887


Q ss_pred             hhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHH
Q 014068           74 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK  153 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~e  153 (431)
                      +.+........ .......+..+.|+|+.++..++.+++++|++.|.+.+..+..          |+||||+|+..|+.+
T Consensus        84 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------g~t~l~~a~~~~~~~  152 (229)
T d1ixva_          84 EVVKSLYDRPL-KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF----------NQIPLHRAASVGSLK  152 (229)
T ss_dssp             HHHHHHHSSSS-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHHTCHH
T ss_pred             ccccccccccc-cccccccccccccccccccccchhhhhhhhhhhcccccccCCC----------CCCccchhhhccccc
Confidence            77766554432 2234556778999999999999999999999999999988866          999999999999999


Q ss_pred             HHHHHHHCC-CCCcccCCCCCcHHHHHHHhCcHHHHHHhc-C-CCCCCCCCC
Q 014068          154 CCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLA-P-SSDAVMPRF  202 (431)
Q Consensus       154 ivklLL~~G-Adin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~-~a~~~~~~~  202 (431)
                      ++++|+++| .+++.+|.+|+||||+|+.+|+.+++++|. + +++++..+.
T Consensus       153 ~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~  204 (229)
T d1ixva_         153 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  204 (229)
T ss_dssp             HHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCT
T ss_pred             ccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCC
Confidence            999999997 688999999999999999999999988766 3 677766543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-27  Score=207.27  Aligned_cols=149  Identities=29%  Similarity=0.387  Sum_probs=139.3

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+||..|++++|++|+++|+|++..|. .|+||||+|+ .|+.+++++|+++++.                         
T Consensus         6 h~Aa~~g~~~~v~~Ll~~g~d~n~~d~-~g~TpL~~A~-~~~~ei~~~Ll~~~a~-------------------------   58 (156)
T d1ihba_           6 ASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQVMK-LGNPEIARRLLLRGAN-------------------------   58 (156)
T ss_dssp             HHHHHHTCHHHHHHHTTSCCCTTCCCT-TSCCHHHHCC-SSCHHHHHHHHHTTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcCccCC-cccccccccc-cccccccccccccccc-------------------------
Confidence            789999999999999999999999998 9999999886 7999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ++..+..|.++|+.++..++.+.+++|++.+.+++..+..          |.+|||+|+..++.+++++|++
T Consensus        59 --------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~l~~a~~~~~~~~~~~Ll~  120 (156)
T d1ihba_          59 --------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE----------GNLPLHLAAKEGHLRVVEFLVK  120 (156)
T ss_dssp             --------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------cccccccCcccccccccccccccccccccccccccccccc----------cccccccccccccccccccccc
Confidence                    6788889999999999999999999999999999998866          9999999999999999999999


Q ss_pred             CCC-CCcccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          161 RGA-SRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       161 ~GA-din~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      +|+ +++.+|.+|+||||+|++.++.+++++|.+.
T Consensus       121 ~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_         121 HTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            986 8899999999999999999999999988654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.5e-27  Score=203.56  Aligned_cols=147  Identities=27%  Similarity=0.311  Sum_probs=133.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |.||+.|+.++|++||++|++++ .+. .|+||||+|+..++.++++.++.....                         
T Consensus         7 ~~Aa~~g~~~~v~~LL~~ga~~~-~~~-~g~t~L~~a~~~~~~~~~~~~~~~~~~-------------------------   59 (153)
T d1awcb_           7 LEAARAGQDDEVRILMANGAPFT-TDW-LGTSPLHLAAQYGHFSTTEVLLRAGVS-------------------------   59 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCCC-CCT-TCCCHHHHHHHHTCHHHHHHHHTTTCC-------------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCcc-ccc-CCCcccccccccccccccccccccccc-------------------------
Confidence            46899999999999999999987 565 899999999999999999999864332                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  160 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~  160 (431)
                              ....+..+.++++.++...+.+++++|+.+|++++.++.+          |+||||+|+..|+.++|++|++
T Consensus        60 --------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------g~T~L~~A~~~g~~~iv~~ll~  121 (153)
T d1awcb_          60 --------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWATEHNHQEVVELLIK  121 (153)
T ss_dssp             --------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------ccccccccccccccccccccceeeecccccCCcccccccc----------CchHHHhhhhcchhheeeeccc
Confidence                    3445566789999999999999999999999999998876          9999999999999999999999


Q ss_pred             CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc
Q 014068          161 RGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  192 (431)
Q Consensus       161 ~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~  192 (431)
                      +|++++.+|.+|+||||+|+.+|+.+++++|.
T Consensus       122 ~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_         122 YGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             cccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            99999999999999999999999999999884

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.4e-27  Score=211.29  Aligned_cols=177  Identities=24%  Similarity=0.241  Sum_probs=129.9

Q ss_pred             CEeeccCCHHHHHHHHH----cCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC---CCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHWEVVQTLLL----FRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~----~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~---~~~~~~l~~a~~~~~~   73 (431)
                      |+||.+|++++|++|++    .|++++..|. .|+||||+|+..|+.+++++|+++++..+   ..+......+......
T Consensus         8 h~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~-~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~   86 (228)
T d1k1aa_           8 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP   86 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCccCC-CCCccceehhcccccccccccccccccccccccccccccccccccccc
Confidence            78999999999999885    7999999997 99999999999999999999999877543   3445566666665555


Q ss_pred             hhHHhhhhhhhhh-----------------------------------hhhcccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 014068           74 SSVKSKCDQSALS-----------------------------------KFVNKAADGGITALHMAALNGYFDCVQLLLDL  118 (431)
Q Consensus        74 ~~~~~~~~~~~~~-----------------------------------~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~  118 (431)
                      ..+..........                                   .........|.++|+.|+..+..+++++++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~  166 (228)
T d1k1aa_          87 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH  166 (228)
T ss_dssp             HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh
Confidence            4443332211100                                   01223334577777777777777777777777


Q ss_pred             CCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          119 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       119 Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      |.+++..+..          |.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+++|+.+|+
T Consensus       167 ~~~~~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         167 GANVNAQMYS----------GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             TCCTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             cccccccccc----------CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcccc
Confidence            7777777655          77777777777777777777777777777777777777777777777665

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-27  Score=220.02  Aligned_cols=185  Identities=20%  Similarity=0.194  Sum_probs=155.3

Q ss_pred             CEeeccCCH----HHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---CCCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHW----EVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~----evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---~~~~~~~~l~~a~~~~~~   73 (431)
                      |+|+.+|+.    +++++|+..|+++|.+|. +|+||||+|+..|+.+++++|++.++.   .+..+.++++.+...+..
T Consensus         7 h~A~~~g~~~~~~~li~~~~~~~~~in~~d~-~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~   85 (221)
T d1iknd_           7 HLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL   85 (221)
T ss_dssp             HHHHHTTCSSSSSCCCC-----CCCCCCCCT-TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCcccCCC-CCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            788999986    455566678999999998 999999999999999999999987764   356678899999999998


Q ss_pred             hhHHhhhhhhhh---hhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC
Q 014068           74 SSVKSKCDQSAL---SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  150 (431)
Q Consensus        74 ~~~~~~~~~~~~---~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g  150 (431)
                      ..+..++.....   ....+.....|.||||.|+..|+.+++++|+..|+.++..+..         .|.||||+|+..|
T Consensus        86 ~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~---------~G~T~L~~A~~~g  156 (221)
T d1iknd_          86 ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC---------NGRTALHLAVDLQ  156 (221)
T ss_dssp             HHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTT
T ss_pred             cccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccccccccc---------CCCCccccccccc
Confidence            888777654322   2224455567899999999999999999999999999887643         3999999999999


Q ss_pred             CHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhcCCC
Q 014068          151 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  195 (431)
Q Consensus       151 ~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~~~a  195 (431)
                      +.+++++|+++|+|++.+|.+|+||||+|+..++.+++++|.+..
T Consensus       157 ~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~  201 (221)
T d1iknd_         157 NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  201 (221)
T ss_dssp             CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             cHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999988876653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=8.6e-26  Score=210.50  Aligned_cols=202  Identities=20%  Similarity=0.167  Sum_probs=143.2

Q ss_pred             ccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC------CCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCc
Q 014068           24 RADYLSGRTALHFAAVNGHVRCIRLVVADFVP------SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI   97 (431)
Q Consensus        24 ~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~------~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~   97 (431)
                      ..+. +|.||||+||..|+.+++++|+++++.      .+..+.+++++|+..+..+.++.++..+   ..++.+|.+|.
T Consensus         4 ~i~~-~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g---a~i~~~d~~g~   79 (255)
T d1oy3d_           4 YVTE-DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG---AGVLVAERGGH   79 (255)
T ss_dssp             CCCT-TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCTTSC
T ss_pred             cCCc-CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccc---ccccccccccc
Confidence            3454 899999999999999999999987653      3456678888888888888887776553   34777888888


Q ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCcccccCC------------------------------------Cccc-cCCCCC
Q 014068           98 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYG------------------------------------TSMD-LIGAGS  140 (431)
Q Consensus        98 TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~------------------------------------~~~~-~~~~G~  140 (431)
                      ||||+|+..|+.+++++|++.+...........                                    ..++ ....|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            888888888888888888877654433211000                                    0000 014578


Q ss_pred             cHHHHHHhcCCHHHHHHHHHCCCCCccc-CCCCCcHHHHHHHhCcHHHHHHhcC-CCCCCCCCCCCCCCCchhhhhHHHH
Q 014068          141 TPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVLNV  218 (431)
Q Consensus       141 TpLh~Aa~~g~~eivklLL~~GAdin~~-d~~G~TpLh~Aa~~g~~~v~~LL~~-~a~~~~~~~~~~~~~~~~l~t~l~~  218 (431)
                      ||||+|+..|+.+++++|+++|++.+.. +..|.||||+|+..|+.+++++|.+ +++++..+..+.        |++++
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~--------t~L~~  231 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGR--------TPLGS  231 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC--------CHHHH
T ss_pred             ccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCC--------CHHHH
Confidence            8888888888888888888888887754 5678888888888888888765544 455544332221        44555


Q ss_pred             HHHcCCccccccCCCCCchhhhhhccccchhccCCChHHHHHHHHHhhhc
Q 014068          219 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCST  268 (431)
Q Consensus       219 A~~~G~~~~~~a~~~~~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~  268 (431)
                      |..                              . +|..+++.|++.||+
T Consensus       232 A~~------------------------------~-~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         232 ALL------------------------------R-PNPILARLLRAHGAP  250 (255)
T ss_dssp             HHT------------------------------S-SCHHHHHHHHHTTCC
T ss_pred             HHH------------------------------C-CCHHHHHHHHHcCCC
Confidence            443                              3 667788999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-26  Score=191.03  Aligned_cols=124  Identities=24%  Similarity=0.215  Sum_probs=113.8

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCC
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  108 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  108 (431)
                      .+.++||+|+..|+.++|++|+++|++                                 +|.+|..|.||||+|+ .|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad---------------------------------~n~~~~~g~t~l~~a~-~g~   47 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN---------------------------------PNAPNSYGRRPIQVMM-MGS   47 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC---------------------------------TTCCCSSSCCTTTSSC-TTC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc---------------------------------cccccccccccccccc-ccc
Confidence            467899999999999999999988765                                 7888999999999775 799


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .++|++|+++|++++..+..         .+.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|+.+++
T Consensus        48 ~~~v~~Ll~~ga~~~~~~~~---------~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v  118 (125)
T d1bi7b_          48 ARVAELLLLHGAEPNCADPA---------TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA  118 (125)
T ss_dssp             HHHHHHHHTTTCCCCCCCTT---------TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccc---------ccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999998865         245799999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCC
Q 014068          189 PLLAPSS  195 (431)
Q Consensus       189 ~LL~~~a  195 (431)
                      ++|+..+
T Consensus       119 ~~Llsaa  125 (125)
T d1bi7b_         119 RYLRAAA  125 (125)
T ss_dssp             HHHSSCC
T ss_pred             HHHHhcC
Confidence            9998754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-24  Score=216.05  Aligned_cols=205  Identities=24%  Similarity=0.275  Sum_probs=157.6

Q ss_pred             EeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCc-----------------
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEV-----------------   61 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~-----------------   61 (431)
                      +|+..|+.++|++|+++|++++..+. +|.+|||+|+..|+.+++++|+.++...   +..+.                 
T Consensus       138 ~a~~~~~~~~v~~ll~~~~~~~~~~~-~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~  216 (408)
T d1n11a_         138 VAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS  216 (408)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCS-SCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCC-cCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhh
Confidence            35667788888888888888887776 7888888888888888888888765532   22233                 


Q ss_pred             ----------------chhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcc
Q 014068           62 ----------------MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV  125 (431)
Q Consensus        62 ----------------~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~  125 (431)
                                      ++++.++..+....+......   ...++..+..|.|||+.|+..++.+++++|+++|++++..
T Consensus       217 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~  293 (408)
T d1n11a_         217 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK---QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT  293 (408)
T ss_dssp             HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCC
T ss_pred             hhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcc---ccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccc
Confidence                            344444444444444443332   2235677888999999999999999999999999999988


Q ss_pred             cccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh-cCCCCCCCCCCCC
Q 014068          126 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-APSSDAVMPRFHP  204 (431)
Q Consensus       126 d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL-~~~a~~~~~~~~~  204 (431)
                      +..          +.||||+|+..++.+++++|+++|+++|.+|.+|+||||+|+++|+.+++++| ..|++++..+..+
T Consensus       294 ~~~----------~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G  363 (408)
T d1n11a_         294 TRM----------GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  363 (408)
T ss_dssp             CSS----------CCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             ccc----------ccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            866          89999999999999999999999999999999999999999999999986554 5677777665544


Q ss_pred             CCCCchhhhhHHHHHHHcCCcccc
Q 014068          205 SNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       205 ~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      .        |++++|.+.|+.+++
T Consensus       364 ~--------t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         364 T--------TPLAIAKRLGYISVT  379 (408)
T ss_dssp             C--------CHHHHHHHTTCHHHH
T ss_pred             C--------CHHHHHHHcCCHHHH
Confidence            4        788888887765543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=1.6e-25  Score=212.82  Aligned_cols=170  Identities=25%  Similarity=0.313  Sum_probs=144.1

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCChhhHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVK   77 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~~~~~   77 (431)
                      |+|+..|+.++|++|+++|++....+. .+.||||+|+..|+.+++++|++++...   +..+.++++++...+....+.
T Consensus        78 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~-~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  156 (291)
T d1s70b_          78 HQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ  156 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHH
T ss_pred             HHHHhcCCceeeeeecccccccccccc-cccccccccccccccchhhcccccCcccccccccCccccccccccccchhcc
Confidence            679999999999999999999988887 8999999999999999999999877643   455667777766665555554


Q ss_pred             hhhhhhhh------------------------hhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcc
Q 014068           78 SKCDQSAL------------------------SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM  133 (431)
Q Consensus        78 ~~~~~~~~------------------------~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~  133 (431)
                      .++.....                        .......+..|.||||+|+..|+.+++++|++.|++++..+..     
T Consensus       157 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~-----  231 (291)
T d1s70b_         157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD-----  231 (291)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT-----
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccC-----
Confidence            44432110                        0113445678999999999999999999999999999998876     


Q ss_pred             ccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHH
Q 014068          134 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM  181 (431)
Q Consensus       134 ~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~  181 (431)
                           |+||||+|+..|+.++|++|+++|||++.+|..|+||||+|++
T Consensus       232 -----g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         232 -----GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             -----CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             -----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                 9999999999999999999999999999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=4.2e-26  Score=214.52  Aligned_cols=211  Identities=17%  Similarity=0.112  Sum_probs=148.1

Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHh--------cCC---CCCCCCcchhhHhhhcCChh
Q 014068            6 YGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------DFV---PSVPFEVMNTQIEGDRGDGS   74 (431)
Q Consensus         6 ~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~--------~~~---~~~~~~~~~l~~a~~~~~~~   74 (431)
                      .|+.++++.|.+.++++...  .+|+||||+||..|+.++|++|+.        .|+   ..+..+.+++++|+..+..+
T Consensus        11 ~~~~~~~~~l~~~~~n~~~~--~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~   88 (277)
T d2fo1e1          11 AGSYAITEPITRESVNIIDP--RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR   88 (277)
T ss_dssp             HSSSCCCSCCSTTTTTTCCC--SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCCHHHHHHHHhcCCCcCCC--CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccc
Confidence            57777788888877776433  369999999999999999998874        233   23456667777777777766


Q ss_pred             hHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCC---CCCCcccccCCCcc------------------
Q 014068           75 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH---ANVSAVTFHYGTSM------------------  133 (431)
Q Consensus        75 ~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~G---advn~~d~~~~~~~------------------  133 (431)
                      .++.++..+   ..++.+|.+|.|||++|+..++.+++++++..+   ..++..+....+..                  
T Consensus        89 iv~~Ll~~G---ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (277)
T d2fo1e1          89 LVAYLMKAG---ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL  165 (277)
T ss_dssp             HHHHHHHTT---CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHH
T ss_pred             ccccccccc---cccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccc
Confidence            666665543   235666667777777777777777666665442   12222221110000                  


Q ss_pred             ----------------ccCCCCCcHHHHHHhcCCHHHHHHHH-HCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCC
Q 014068          134 ----------------DLIGAGSTPLHFAACGGNLKCCQVLL-SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSS  195 (431)
Q Consensus       134 ----------------~~~~~G~TpLh~Aa~~g~~eivklLL-~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a  195 (431)
                                      .....|.||||+++..++.+++++++ ..+.+++.+|..|+||||+|+..|+.+++++|. .++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~ga  245 (277)
T d2fo1e1         166 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA  245 (277)
T ss_dssp             HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcC
Confidence                            00045899999999999999998755 678999999999999999999999999976654 566


Q ss_pred             CCCCCCCCCCCCCchhhhhHHHHHHHcCCccccc
Q 014068          196 DAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTT  229 (431)
Q Consensus       196 ~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~~  229 (431)
                      +++..+..+.        |++++|...|..+++.
T Consensus       246 din~~d~~G~--------T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         246 SVEAVDATDH--------TARQLAQANNHHNIVD  271 (277)
T ss_dssp             CSSCCCSSSC--------CHHHHHHHTTCHHHHH
T ss_pred             CCCCcCCCCC--------CHHHHHHHcCCHHHHH
Confidence            7666544433        7899999988766553

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1e-24  Score=199.89  Aligned_cols=179  Identities=21%  Similarity=0.143  Sum_probs=150.6

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccC--CCCCchHHHHHHHhCCHHHHHHHHhcCCC-----CCCCCcchhhHhhhcCCh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRAD--YLSGRTALHFAAVNGHVRCIRLVVADFVP-----SVPFEVMNTQIEGDRGDG   73 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d--~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~-----~~~~~~~~l~~a~~~~~~   73 (431)
                      |+|+..|+.++|++||++|++++..+  ...|.||+|+|+..+..++++.++..+..     .+..+.++++.++..+..
T Consensus        39 ~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  118 (229)
T d1ixva_          39 HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWF  118 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence            68999999999999999999987432  23799999999999999999999875543     344566778888888888


Q ss_pred             hhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCcccccCCCccccCCCCCcHHHHHHhcCCH
Q 014068           74 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  152 (431)
Q Consensus        74 ~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~G-advn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~  152 (431)
                      .....++....   ..+.+|..|.||||+|+..|+.+++++|++.| .+++.+|..          |+||||+|+..|+.
T Consensus       119 ~~~~~l~~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~----------g~TpLh~A~~~~~~  185 (229)
T d1ixva_         119 EVSQFLIENGA---SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHG  185 (229)
T ss_dssp             HHHHHHHHTTC---CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTT----------SCCHHHHHHHTTCH
T ss_pred             hhhhhhhhhcc---cccccCCCCCCccchhhhcccccccccccccccccccccccc----------cCCchhhhcccccH
Confidence            77776655433   36778889999999999999999999999987 678888866          99999999999999


Q ss_pred             HHHHHHHH-CCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCC
Q 014068          153 KCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSS  195 (431)
Q Consensus       153 eivklLL~-~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a  195 (431)
                      ++|++|++ .|++++.+|.+|+||||+|+.   .+++++|. +|+
T Consensus       186 ~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~  227 (229)
T d1ixva_         186 DAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVV  227 (229)
T ss_dssp             HHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCC
Confidence            99999997 599999999999999999984   46766665 444

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.2e-25  Score=187.41  Aligned_cols=107  Identities=30%  Similarity=0.423  Sum_probs=101.9

Q ss_pred             chHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHH
Q 014068           31 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  110 (431)
Q Consensus        31 ~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  110 (431)
                      .|||+||++.|+.++|++|++++++                                 ++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d---------------------------------~n~~~~~g~t~lh~A~~~~~~~   49 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQLE   49 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC---------------------------------CCCCSSSSCCTTHHHHHHSTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc---------------------------------cccccccccccccccccccccc
Confidence            4899999999999999999988765                                 7889999999999999999999


Q ss_pred             HHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q 014068          111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  180 (431)
Q Consensus       111 ~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa  180 (431)
                      ++++|+++|++++.+|..          |+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|.
T Consensus        50 ~~~~ll~~g~din~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          50 ILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHSSCTTTCCSSS----------CSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccccceeeecccc----------cccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999876          999999999999999999999999999999999999999983

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=5.5e-26  Score=223.91  Aligned_cols=194  Identities=17%  Similarity=0.072  Sum_probs=153.2

Q ss_pred             CEeeccCCHHHHHH---HHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCC-----CCCcchhhHhhhcCC
Q 014068            1 MQACRYGHWEVVQT---LLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV-----PFEVMNTQIEGDRGD   72 (431)
Q Consensus         1 H~Aa~~G~~evVk~---LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~-----~~~~~~l~~a~~~~~   72 (431)
                      |+||++|+.+++++   |++.|++++..+. .|+||||+||++||.++|++|++.++..+     ..+.+++|+|+..|+
T Consensus        95 ~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~-~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~  173 (346)
T d2ajaa1          95 FVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH  173 (346)
T ss_dssp             HHHHHHCCHHHHHHHTTC--CCSSCC--CH-HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHhCCCcccccCC-CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhh
Confidence            57999999887776   7899999999997 99999999999999999999999887643     347789999999999


Q ss_pred             hhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCcc-------------------
Q 014068           73 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM-------------------  133 (431)
Q Consensus        73 ~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~-------------------  133 (431)
                      .++++.++..+......+..+.+|.||||.|+.+|+.++|++|++.|++++..+.......                   
T Consensus       174 ~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (346)
T d2ajaa1         174 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH  253 (346)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHH
Confidence            9999999887665555666667788999999999999999999999987654332111000                   


Q ss_pred             ------------ccC--------CCCCcHHHHHHhcCCHHHHHHHHHCCCC-----CcccCCCCCcHHHHHHHhCcHHHH
Q 014068          134 ------------DLI--------GAGSTPLHFAACGGNLKCCQVLLSRGAS-----RMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       134 ------------~~~--------~~G~TpLh~Aa~~g~~eivklLL~~GAd-----in~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                                  ++.        ..+.++|+.|+..|+.+++++|++.++.     .+..+.+|+||||+|++.|+.+++
T Consensus       254 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v  333 (346)
T d2ajaa1         254 DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC  333 (346)
T ss_dssp             TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHH
T ss_pred             HHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHH
Confidence                        000        0124789999999999999999998764     334456899999999999999999


Q ss_pred             HHhcCCC
Q 014068          189 PLLAPSS  195 (431)
Q Consensus       189 ~LL~~~a  195 (431)
                      ++|+.-+
T Consensus       334 ~lLL~~p  340 (346)
T d2ajaa1         334 ALLLSIP  340 (346)
T ss_dssp             HHHTTSH
T ss_pred             HHHhCCC
Confidence            9998643

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-24  Score=182.51  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=105.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |+||..|++++|++|+++|++++..+. .|.||||+|+ .|+.+++++|+++++.                         
T Consensus         8 ~~Aa~~G~~~~v~~Ll~~gad~n~~~~-~g~t~l~~a~-~g~~~~v~~Ll~~ga~-------------------------   60 (125)
T d1bi7b_           8 ATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMM-MGSARVAELLLLHGAE-------------------------   60 (125)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCS-SSCCTTTSSC-TTCHHHHHHHHTTTCC-------------------------
T ss_pred             HHHHHCCCHHHHHHHHHcCCccccccc-cccccccccc-cccccccccccccccc-------------------------
Confidence            679999999999999999999999997 9999999775 7999999999987665                         


Q ss_pred             hhhhhhhhhcccCCCCc-hHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGI-TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~-TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                              ++.++..|. ||||+|+..|+.++|++|+++|++++.+|..          |+||||+|+.+|+.+++++|+
T Consensus        61 --------~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          61 --------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW----------GRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             --------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT----------CCCHHHHHHHHTCHHHHHHHS
T ss_pred             --------cccccccccccccccccccccccccccccccccccccccCC----------CCCHHHHHHHcCCHHHHHHHH
Confidence                    677777665 6999999999999999999999999999976          999999999999999999997


Q ss_pred             H
Q 014068          160 S  160 (431)
Q Consensus       160 ~  160 (431)
                      +
T Consensus       123 s  123 (125)
T d1bi7b_         123 A  123 (125)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=188.78  Aligned_cols=159  Identities=26%  Similarity=0.269  Sum_probs=119.1

Q ss_pred             CCchHHHHHHHhCCHHHHHHHHh----cCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHH
Q 014068           29 SGRTALHFAAVNGHVRCIRLVVA----DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA  104 (431)
Q Consensus        29 ~G~TpLh~Aa~~G~~eiv~~LL~----~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa  104 (431)
                      +|+||||+||..|+.+++++|++    .++                                 .+|.+|..|+||||+|+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~---------------------------------~in~~d~~g~TpL~~A~   48 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGR---------------------------------ELDIYNNLRQTPLHLAV   48 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTC---------------------------------CSCCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCC---------------------------------CCCccCCCCCccceehh
Confidence            79999999999999999999985    222                                 25666666777777777


Q ss_pred             HcCCHHHHHHHHHCCCCCCcccccCCCccc--------------------------------------------------
Q 014068          105 LNGYFDCVQLLLDLHANVSAVTFHYGTSMD--------------------------------------------------  134 (431)
Q Consensus       105 ~~g~~e~VklLL~~Gadvn~~d~~~~~~~~--------------------------------------------------  134 (431)
                      ..|+.++|++|+++|++++..+..+...+.                                                  
T Consensus        49 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  128 (228)
T d1k1aa_          49 ITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQL  128 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhh
Confidence            777777777777766666554432211110                                                  


Q ss_pred             -----------cCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHhc-CCCCCCCCCC
Q 014068          135 -----------LIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRF  202 (431)
Q Consensus       135 -----------~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL~-~~a~~~~~~~  202 (431)
                                 ....|.++|++|+..+...++++++++|.+++.+|..|.||||+|+..|+.+++++|. .+++++..+.
T Consensus       129 l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~  208 (228)
T d1k1aa_         129 LLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  208 (228)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence                       0146899999999999999999999999999999999999999999999999876554 5667776554


Q ss_pred             CCCCCCchhhhhHHHHHHHcCCcccc
Q 014068          203 HPSNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       203 ~~~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      .+.        |+|++|.+.|..+++
T Consensus       209 ~G~--------TpL~~A~~~~~~div  226 (228)
T d1k1aa_         209 HND--------TPLMVARSRRVIDIL  226 (228)
T ss_dssp             TSC--------CTTTTCSSHHHHHHH
T ss_pred             CCC--------CHHHHHHhCCCcccc
Confidence            433        566677666655443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1e-23  Score=178.45  Aligned_cols=120  Identities=26%  Similarity=0.332  Sum_probs=109.4

Q ss_pred             chHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHH
Q 014068           31 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  110 (431)
Q Consensus        31 ~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  110 (431)
                      .++||.|+..|+.++|++|++++++                                 +|.+|.+|+||||+|+..|+.+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d---------------------------------~n~~d~~g~t~Lh~A~~~~~~~   48 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDD---------------------------------PSLPNDEGITALHNAVCAGHTE   48 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSS---------------------------------CCCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cccccccccccccccccccccc
Confidence            3789999999999999999988765                                 8899999999999999999999


Q ss_pred             HHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCC-CCCcHHHHH--HHhCcHHH
Q 014068          111 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDVA--RMWGRHWL  187 (431)
Q Consensus       111 ~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~-~G~TpLh~A--a~~g~~~v  187 (431)
                      ++++|+++|++++..|.+          |+||||+|+..|+.++|++|+++|++++.++. .|+||++++  ...|+.++
T Consensus        49 ~~~~ll~~g~~~~~~d~~----------g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~ei  118 (130)
T d1ycsb1          49 IVKFLVQFGVNVNAADSD----------GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQC  118 (130)
T ss_dssp             HHHHHHHHTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCH
T ss_pred             cccccccccccccccccc----------CcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHH
Confidence            999999999999999977          99999999999999999999999999998874 688988776  56788999


Q ss_pred             HHHhcC
Q 014068          188 EPLLAP  193 (431)
Q Consensus       188 ~~LL~~  193 (431)
                      +++|..
T Consensus       119 v~~L~~  124 (130)
T d1ycsb1         119 SQFLYG  124 (130)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988853

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.8e-24  Score=179.60  Aligned_cols=119  Identities=27%  Similarity=0.323  Sum_probs=107.5

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      |.||..|+.++|++|+++|+|++.+|. +|+||||+|+..|+.+++++|++.+.+                         
T Consensus         6 ~~A~~~G~~~~v~~Ll~~g~d~n~~d~-~g~t~Lh~A~~~~~~~~~~~ll~~g~~-------------------------   59 (130)
T d1ycsb1           6 LDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGHTEIVKFLVQFGVN-------------------------   59 (130)
T ss_dssp             HHHHHHTCHHHHHHHTSTTSSCCCCCT-TSCCHHHHHHHHTCHHHHHHHHHHTCC-------------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccc-ccccccccccccccccccccccccccc-------------------------
Confidence            468999999999999999999999998 999999999999999999999987654                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHH--HhcCCHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVL  158 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~A--a~~g~~eivklL  158 (431)
                              ++.+|.+|+||||+|+.+|+.++|++|+++|++++..+..         .|.||++++  +..|+.+++++|
T Consensus        60 --------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~---------~~~~~~~~~~a~~~g~~eiv~~L  122 (130)
T d1ycsb1          60 --------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS---------DMQTAADKCEEMEEGYTQCSQFL  122 (130)
T ss_dssp             --------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS---------SCCCHHHHCCSSSTTCCCHHHHH
T ss_pred             --------cccccccCcccccccchhhHHHHHHHHHHcCCCcccccCC---------CCCCHHHHHHHHHcChHHHHHHH
Confidence                    7889999999999999999999999999999999987754         378887765  678999999999


Q ss_pred             HHCC
Q 014068          159 LSRG  162 (431)
Q Consensus       159 L~~G  162 (431)
                      ++.+
T Consensus       123 ~~~~  126 (130)
T d1ycsb1         123 YGVQ  126 (130)
T ss_dssp             HHHH
T ss_pred             HhHH
Confidence            8753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.5e-23  Score=176.92  Aligned_cols=146  Identities=25%  Similarity=0.218  Sum_probs=129.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHH
Q 014068           32 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  111 (431)
Q Consensus        32 TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  111 (431)
                      +.||.||..|+.++|++||+++..                                .++.+|..|.||||+|+ .|+.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~--------------------------------~~n~~d~~g~t~L~~A~-~~~~~~   50 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELV--------------------------------HPDALNRFGKTALQVMM-FGSTAI   50 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCC--------------------------------CTTCCCTTSCCHHHHSC-TTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCC--------------------------------CCCccCCCCCccccccc-cccccc
Confidence            459999999999999999975321                                27888999999999987 589999


Q ss_pred             HHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh
Q 014068          112 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  191 (431)
Q Consensus       112 VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL  191 (431)
                      |++||+++++++..+..          |.+||++|+..++.+++++++++|++++.+|..|+||||+|+..|+.+++++|
T Consensus        51 v~~Ll~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L  120 (156)
T d1bd8a_          51 ALELLKQGASPNVQDTS----------GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL  120 (156)
T ss_dssp             HHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccc----------cccccccccccccccccccccccccccccccCCCCeeeccccccccccccccc
Confidence            99999999999998866          99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccc
Q 014068          192 APSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       192 ~~~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      ..+++++..+..+.        |++++|...|..+++
T Consensus       121 ~~~~~~~~~d~~G~--------TpL~~A~~~g~~~iv  149 (156)
T d1bd8a_         121 AAESDLHRRDARGL--------TPLELALQRGAQDLV  149 (156)
T ss_dssp             HTTSCTTCCCTTSC--------CHHHHHHHSCCHHHH
T ss_pred             cccccccccCCCCC--------CHHHHHHHcCCHHHH
Confidence            99888776654433        889999998876554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-22  Score=175.14  Aligned_cols=144  Identities=25%  Similarity=0.171  Sum_probs=124.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHH
Q 014068           32 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  111 (431)
Q Consensus        32 TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  111 (431)
                      +|||+||..|+.++|++|+++|++                                 ++.+|.+|.||||+|+ .|+.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d---------------------------------~n~~d~~g~TpL~~A~-~~~~ei   48 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN---------------------------------VNAQNGFGRTALQVMK-LGNPEI   48 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC---------------------------------TTCCCTTSCCHHHHCC-SSCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------------------------cCccCCcccccccccc-cccccc
Confidence            899999999999999999998775                                 7889999999999886 799999


Q ss_pred             HHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHHHh
Q 014068          112 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  191 (431)
Q Consensus       112 VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~LL  191 (431)
                      +++|+++|++++..+..          |.++|+.++..++.+++++|++++.+++..|..|.+|||+|+..++.+++++|
T Consensus        49 ~~~Ll~~~a~~~~~~~~----------~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  118 (156)
T d1ihba_          49 ARRLLLRGANPDLKDRT----------GFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL  118 (156)
T ss_dssp             HHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccccccc----------Ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999998876          99999999999999999999999999999999999999999999999998776


Q ss_pred             cCCCC--CCCCCCCCCCCCchhhhhHHHHHHHcCCccc
Q 014068          192 APSSD--AVMPRFHPSNYLSLPLLSVLNVARECGLLSS  227 (431)
Q Consensus       192 ~~~a~--~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~  227 (431)
                      .....  .+..+..        +.|++++|...|..++
T Consensus       119 l~~~~~~~~~~d~~--------g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_         119 VKHTASNVGHRNHK--------GDTACDLARLYGRNEV  148 (156)
T ss_dssp             HHHSCCCTTCCCTT--------SCCHHHHHHHTTCHHH
T ss_pred             cccccccccccCCC--------CCCHHHHHHHcCCHHH
Confidence            54433  3332222        2377888887665543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.9e-24  Score=179.97  Aligned_cols=111  Identities=27%  Similarity=0.345  Sum_probs=100.9

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhh
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC   80 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~   80 (431)
                      ++|+++|+.++|++|+++|++++..+. .|+||||+|+..|+.+++++|++.+..                         
T Consensus         7 ~~A~~~g~~~~v~~Ll~~g~d~n~~~~-~g~t~lh~A~~~~~~~~~~~ll~~g~d-------------------------   60 (118)
T d1myoa_           7 MWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGAD-------------------------   60 (118)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCCCCSS-SSCCTTHHHHHHSTTTHHHHHHHSSCT-------------------------
T ss_pred             HHHHHCCCHHHHHHHHHhhhccccccc-cccccccccccccccccccccccccce-------------------------
Confidence            479999999999999999999999997 999999999999999999999988664                         


Q ss_pred             hhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 014068           81 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL  159 (431)
Q Consensus        81 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL  159 (431)
                              ++.+|..|.||||+|+.+|+.++|++|+++|++++.+|.+          |.||||+|..    +.++.||
T Consensus        61 --------in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~----------G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_          61 --------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD----------GLTALEATDN----QAIKALL  117 (118)
T ss_dssp             --------TTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSS----------TCCCCCTCSS----TTTGGGG
T ss_pred             --------eeecccccccchhhhhhcCchhhhhhhhcccccceeeCCC----------CCCHHHHHhH----HHHHHhc
Confidence                    7889999999999999999999999999999999999977          9999999833    3455444

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.9e-23  Score=198.99  Aligned_cols=152  Identities=18%  Similarity=0.148  Sum_probs=113.8

Q ss_pred             HHcCCCCccc-CCCCCchHHHHHHHhCCHHHHHHHHhcCCCC---CCCCcchhhHhhhcCCh---hhHHhhhhhhhhhhh
Q 014068           16 LLFRCNVTRA-DYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDG---SSVKSKCDQSALSKF   88 (431)
Q Consensus        16 L~~gadi~~~-d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~~---~~~~~~~l~~a~~~~~~---~~~~~~~~~~~~~~~   88 (431)
                      ...++++|.. |. +|+||||+||..|+.++|++|++.|+..   +..+.++++.|+..++.   ..+..++.  .+...
T Consensus        93 ~~~~~dvn~~~D~-~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~--~l~~~  169 (301)
T d1sw6a_          93 PNTQLNLNIPVDE-HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD--YLYPC  169 (301)
T ss_dssp             TTSCCCSCSCCST-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH--HHGGG
T ss_pred             CccCCCcCcCcCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHH--HHhhh
Confidence            3457888866 65 8999999999999999999999988754   45588999999876542   11111111  11233


Q ss_pred             hcccCCCCchHHHHHHHcCC----HH--------HHHHHHHCCCC-----------------------------------
Q 014068           89 VNKAADGGITALHMAALNGY----FD--------CVQLLLDLHAN-----------------------------------  121 (431)
Q Consensus        89 in~~d~~G~TpLh~Aa~~g~----~e--------~VklLL~~Gad-----------------------------------  121 (431)
                      ++.+|..|+||||+|+..+.    ..        ++++++..+..                                   
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  249 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh
Confidence            67788899999999886554    22        33445554433                                   


Q ss_pred             --CCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHH
Q 014068          122 --VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  180 (431)
Q Consensus       122 --vn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa  180 (431)
                        +|.+|.          .|+||||+|++.|+.++|++|+++||+++.+|..|+|||++|+
T Consensus       250 ~~in~~D~----------~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         250 NMLNAQDS----------NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HTTTCCCT----------TSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCccCCCC----------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence              344443          4999999999999999999999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=184.15  Aligned_cols=189  Identities=22%  Similarity=0.159  Sum_probs=150.7

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCC--------------------------------CCCchHHHHHHHhCCHHHHHH
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADY--------------------------------LSGRTALHFAAVNGHVRCIRL   48 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~--------------------------------~~G~TpLh~Aa~~G~~eiv~~   48 (431)
                      |+|+..|+.+++++|++.+......+.                                ..|.|+|++|+..|+..+++.
T Consensus        44 ~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  123 (285)
T d1wdya_          44 HNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF  123 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhh
Confidence            578999999999999998776644433                                245566777777777776666


Q ss_pred             HHhcCCC-------------CCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcC----CHHH
Q 014068           49 VVADFVP-------------SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG----YFDC  111 (431)
Q Consensus        49 LL~~~~~-------------~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g----~~e~  111 (431)
                      ++.....             ....+.++++.|+..+..+.+..++...  ...++..+..|.++++.+...+    ..++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i  201 (285)
T d1wdya_         124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM--GADVNACDNMGRNALIHALLSSDDSDVEAI  201 (285)
T ss_dssp             HHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS--CCCTTCCCTTSCCHHHHHHHCSCTTTHHHH
T ss_pred             hhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhcc--CCCcccccCCCCcccccccccccchHHHHH
Confidence            6643221             2233567899999999999988887643  3357888999998888766543    4579


Q ss_pred             HHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHC-CCCCcccCCCCCcHHHHHHHhCcHHHHHH
Q 014068          112 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPL  190 (431)
Q Consensus       112 VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~-GAdin~~d~~G~TpLh~Aa~~g~~~v~~L  190 (431)
                      +++|+++|++++.++..          |.||||+|+..|+.++|++||++ |++++.+|.+|.||||+|+++|+.+++++
T Consensus       202 ~~~Li~~ga~~n~~~~~----------g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~  271 (285)
T d1wdya_         202 THLLLDHGADVNVRGER----------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             HHHHHHTTCCSSCCCTT----------SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHCCCCCCccCCC----------CCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999998866          99999999999999999999985 99999999999999999999999999765


Q ss_pred             h-cCCCCCCCCC
Q 014068          191 L-APSSDAVMPR  201 (431)
Q Consensus       191 L-~~~a~~~~~~  201 (431)
                      | ..|++++..+
T Consensus       272 Ll~~GAd~n~~d  283 (285)
T d1wdya_         272 LCKRGASTDCGD  283 (285)
T ss_dssp             HHHHSSCSCCSS
T ss_pred             HHHCCCCCCccc
Confidence            5 5678877653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.3e-21  Score=170.51  Aligned_cols=128  Identities=27%  Similarity=0.265  Sum_probs=108.8

Q ss_pred             hHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHc---CC
Q 014068           32 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN---GY  108 (431)
Q Consensus        32 TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~---g~  108 (431)
                      ..|..|++.++...+..++.++.+...                           .......+..|.||||+|+..   |+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~---------------------------~~~~~~~~~~g~t~Lh~A~~~~~~~~   60 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTE---------------------------KIPLANGHEPDETALHLAVRSVDRTS   60 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTS---------------------------BCCCSSCSSTTCBHHHHHHHHCCTTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCC---------------------------CCCcccCCCCCCchHHHHHHhcCCCC
Confidence            345678899999999988877654211                           011344566799999999974   67


Q ss_pred             HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHH
Q 014068          109 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       109 ~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                      .++|++|+++|++++.+|..          |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|++.|+.+++
T Consensus        61 ~~iv~~Ll~~gadin~~d~~----------g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~  130 (154)
T d1dcqa1          61 LHIVDFLVQNSGNLDKQTGK----------GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE  130 (154)
T ss_dssp             HHHHHHHHHHCSCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCChhhhhhh----------hccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHH
Confidence            89999999999999999976          99999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCC
Q 014068          189 PLLAPSSD  196 (431)
Q Consensus       189 ~LL~~~a~  196 (431)
                      ++|.+...
T Consensus       131 ~~L~~~~~  138 (154)
T d1dcqa1         131 ELLTQALS  138 (154)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhCC
Confidence            88876443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=7.8e-22  Score=171.99  Aligned_cols=120  Identities=23%  Similarity=0.289  Sum_probs=108.2

Q ss_pred             EeeccCCHHHHHHHHHcCCCCccc------CCCCCchHHHHHHHh---CCHHHHHHHHhcCCCCCCCCcchhhHhhhcCC
Q 014068            2 QACRYGHWEVVQTLLLFRCNVTRA------DYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD   72 (431)
Q Consensus         2 ~Aa~~G~~evVk~LL~~gadi~~~------d~~~G~TpLh~Aa~~---G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~   72 (431)
                      .|++.+++..|..++..|+|++..      +. .|+||||+|++.   |+.++|++|+++++.                 
T Consensus        12 ~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-----------------   73 (154)
T d1dcqa1          12 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHE-PDETALHLAVRSVDRTSLHIVDFLVQNSGN-----------------   73 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSS-TTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-----------------
T ss_pred             HHHHhCCHHHHHHHHHcCCCcCCCCCcccCCC-CCCchHHHHHHhcCCCCHHHHHHHHHcCCC-----------------
Confidence            467899999999999999987754      43 799999999984   788999999987765                 


Q ss_pred             hhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCH
Q 014068           73 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  152 (431)
Q Consensus        73 ~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~  152 (431)
                                      +|.+|..|.||||+|+..|+.++|++|+++|++++.+|..          |.||||+|++.|+.
T Consensus        74 ----------------in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~----------g~tpL~~A~~~~~~  127 (154)
T d1dcqa1          74 ----------------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES----------GETPLDIAKRLKHE  127 (154)
T ss_dssp             ----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCH
T ss_pred             ----------------hhhhhhhhccccccccccccccccccccccCccccccCCC----------CCCHHHHHHHcCCH
Confidence                            8899999999999999999999999999999999999976          99999999999999


Q ss_pred             HHHHHHHHCCCCC
Q 014068          153 KCCQVLLSRGASR  165 (431)
Q Consensus       153 eivklLL~~GAdi  165 (431)
                      +++++|++.++..
T Consensus       128 ~i~~~L~~~~~~~  140 (154)
T d1dcqa1         128 HCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCC
Confidence            9999999986643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.8e-21  Score=165.98  Aligned_cols=147  Identities=24%  Similarity=0.238  Sum_probs=127.4

Q ss_pred             CchHHHHHHHhCCHHHHHHHHhcCCCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCH
Q 014068           30 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  109 (431)
Q Consensus        30 G~TpLh~Aa~~G~~eiv~~LL~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  109 (431)
                      ..||||.||+.|+.++|++||+++++                                 ++ .|..|.||||+|+..++.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~---------------------------------~~-~~~~g~t~L~~a~~~~~~   47 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAP---------------------------------FT-TDWLGTSPLHLAAQYGHF   47 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCC---------------------------------CC-CCTTCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCC---------------------------------cc-cccCCCcccccccccccc
Confidence            35999999999999999999988764                                 33 578899999999999999


Q ss_pred             HHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHCCCCCcccCCCCCcHHHHHHHhCcHHHHH
Q 014068          110 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  189 (431)
Q Consensus       110 e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklLL~~GAdin~~d~~G~TpLh~Aa~~g~~~v~~  189 (431)
                      ++++.++.........+..          +.+++++++...+.+++++|+.+|++++.+|.+|+||||+|+..|+.++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~  117 (153)
T d1awcb_          48 STTEVLLRAGVSRDARTKV----------DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE  117 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccc----------cccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheee
Confidence            9999999888777766654          889999999999999999999999999999999999999999999999977


Q ss_pred             HhcC-CCCCCCCCCCCCCCCchhhhhHHHHHHHcCCcccc
Q 014068          190 LLAP-SSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSST  228 (431)
Q Consensus       190 LL~~-~a~~~~~~~~~~~~~~~~l~t~l~~A~~~G~~~~~  228 (431)
                      +|.+ +++++..+..+.        |++++|.+.|..+++
T Consensus       118 ~ll~~gad~~~~d~~g~--------Tpl~~A~~~g~~eiv  149 (153)
T d1awcb_         118 LLIKYGADVHTQSKFCK--------TAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHTTCCTTCCCTTSC--------CHHHHHHHTTCHHHH
T ss_pred             eccccccCCcccCCCCC--------CHHHHHHHcCCHHHH
Confidence            6654 566666554433        899999999887654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=4.8e-23  Score=202.65  Aligned_cols=149  Identities=17%  Similarity=0.122  Sum_probs=118.7

Q ss_pred             eccCCHHHHHHHHHcCCCCc-----------ccCCCCCchHHHHHHHhCCHHHHHH---HHhcCCCCCCCCcchhhHhhh
Q 014068            4 CRYGHWEVVQTLLLFRCNVT-----------RADYLSGRTALHFAAVNGHVRCIRL---VVADFVPSVPFEVMNTQIEGD   69 (431)
Q Consensus         4 a~~G~~evVk~LL~~gadi~-----------~~d~~~G~TpLh~Aa~~G~~eiv~~---LL~~~~~~~~~~~~~l~~a~~   69 (431)
                      ...+..++.++|...+++++           .++. .|.||||+|+++||.+++++   |++.++.              
T Consensus        54 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~--------------  118 (346)
T d2ajaa1          54 GTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGI-KSEVICFVAAITGCSSALDTLCLLLTSDEI--------------  118 (346)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTC-CHHHHHHHHHHHCCHHHHHHHTTC--CCSS--------------
T ss_pred             hhccHHHHHHHHHHcchhhccchhhhhhHHHhccC-CCCcHHHHHHHhCCHHHHHHHHHHHhCCCc--------------
Confidence            34455667777766654433           4454 89999999999999988876   4555443              


Q ss_pred             cCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhc
Q 014068           70 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG  149 (431)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~  149 (431)
                                         +|.+|.+|+||||+||.+||.++|++|+++|++++..+..        ..|.||||+|+.+
T Consensus       119 -------------------in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~--------~~g~t~L~~Aa~~  171 (346)
T d2ajaa1         119 -------------------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ--------AENYHAFRLAAEN  171 (346)
T ss_dssp             -------------------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS--------HHHHHHHHHHHHT
T ss_pred             -------------------ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc--------cCCCChhHHHHHH
Confidence                               8889999999999999999999999999999999887642        1389999999999


Q ss_pred             CCHHHHHHHHHCCCCCc---ccCCCCCcHHHHHHHhCcHHHHHHhcCC
Q 014068          150 GNLKCCQVLLSRGASRM---SLNCNGWLPLDVARMWGRHWLEPLLAPS  194 (431)
Q Consensus       150 g~~eivklLL~~GAdin---~~d~~G~TpLh~Aa~~g~~~v~~LL~~~  194 (431)
                      |+.++|++|+++|++..   ..+.+|.||++.|+.+|+.+++++|.+.
T Consensus       172 g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         172 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             TCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred             hhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC
Confidence            99999999999998763   4456778899999999999999888764

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=177.75  Aligned_cols=150  Identities=24%  Similarity=0.214  Sum_probs=130.8

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC---------CCCCCcchhhHhhhcC
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP---------SVPFEVMNTQIEGDRG   71 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~---------~~~~~~~~l~~a~~~~   71 (431)
                      |+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..         ....+.++++.++..+
T Consensus        44 h~A~~~~~~~iv~~L~~~g~d~~~~d~-~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~  122 (221)
T d1iknd_          44 HLAVITNQPEIAEALLGAGCDPELRDF-RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG  122 (221)
T ss_dssp             HHHHHTTCHHHHHCCCSCCCCSCCCCT-TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcC
Confidence            689999999999999999999999997 999999999999999999999975442         2333568899999988


Q ss_pred             ChhhHHhhhhhhhhhhhhccc-CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcC
Q 014068           72 DGSSVKSKCDQSALSKFVNKA-ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  150 (431)
Q Consensus        72 ~~~~~~~~~~~~~~~~~in~~-d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g  150 (431)
                      ....+..+.....   .++.. +.+|.||||+|+..|+.++|++|+++|+|++.++.+          |+||||+|+..+
T Consensus       123 ~~~~~~~l~~~~~---~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~----------G~tpl~~A~~~~  189 (221)
T d1iknd_         123 YLGIVELLVSLGA---DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRP  189 (221)
T ss_dssp             CHHHHHHHHHHTC---CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTT----------CCCGGGGCTTSS
T ss_pred             ChhheeeecccCc---ccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCC----------CCCHHHHHHHCC
Confidence            8888877655432   34444 467999999999999999999999999999999977          999999999999


Q ss_pred             CHHHHHHHHHCCCC
Q 014068          151 NLKCCQVLLSRGAS  164 (431)
Q Consensus       151 ~~eivklLL~~GAd  164 (431)
                      +.+++++|++.+.+
T Consensus       190 ~~~~~~~l~~~~~~  203 (221)
T d1iknd_         190 STRIQQQLGQLTLE  203 (221)
T ss_dssp             CHHHHHHHHTTSCG
T ss_pred             CHHHHHHHHHcCCc
Confidence            99999999998765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=3.5e-20  Score=166.79  Aligned_cols=144  Identities=19%  Similarity=0.175  Sum_probs=122.2

Q ss_pred             CEeeccCCHHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHh-----------------------------
Q 014068            1 MQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVA-----------------------------   51 (431)
Q Consensus         1 H~Aa~~G~~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~-----------------------------   51 (431)
                      |+||++|+.++|++|+++|++++..+. .+.+++++++..++.........                             
T Consensus        28 ~~A~~~g~~e~v~~Ll~~g~~~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (209)
T d1ot8a_          28 HLAARFARADAAKRLLDAGADANSQDN-TGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMV  106 (209)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHH
T ss_pred             HHHHHcCCHHHHHHHHhhccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence            789999999999999999999999987 89999999998888776665552                             


Q ss_pred             -----cC---CCCCCCCcchhhHhhhcCChhhHHhhhhhhhhhhhhcccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 014068           52 -----DF---VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS  123 (431)
Q Consensus        52 -----~~---~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~VklLL~~Gadvn  123 (431)
                           .+   ...+..+.++++.++..+....+..++....   .++..|..|.||||+|+..|+.++|++||++|++++
T Consensus       107 ~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~---~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n  183 (209)
T d1ot8a_         107 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHA---NRDAQDDKDETPLFLAAREGSYEASKALLDNFANRE  183 (209)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC---CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccc---cccccccccccccchhccccHHHHHHHHHHCCCCCC
Confidence                 11   1234556678888888887777766655433   478899999999999999999999999999999999


Q ss_pred             cccccCCCccccCCCCCcHHHHHHhcCCHHHHHHH
Q 014068          124 AVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  158 (431)
Q Consensus       124 ~~d~~~~~~~~~~~~G~TpLh~Aa~~g~~eivklL  158 (431)
                      ..|..          |.||||+|+++|+.++|++|
T Consensus       184 ~~d~~----------g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         184 ITDHM----------DRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred             CcCCC----------CCCHHHHHHHcCCHHHHhhc
Confidence            99876          99999999999999999987

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=2.1e-20  Score=179.65  Aligned_cols=181  Identities=12%  Similarity=-0.059  Sum_probs=96.0

Q ss_pred             HHHHHHHHHcCCCCcccCCCCCchHHHHHHHhCCHHHHHHHHhcCCC----CCCCCcchhhHhhhcCChhhHHhhhhhhh
Q 014068            9 WEVVQTLLLFRCNVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP----SVPFEVMNTQIEGDRGDGSSVKSKCDQSA   84 (431)
Q Consensus         9 ~evVk~LL~~gadi~~~d~~~G~TpLh~Aa~~G~~eiv~~LL~~~~~----~~~~~~~~l~~a~~~~~~~~~~~~~~~~~   84 (431)
                      .+....+...+.+.+...........+.+......++...+...+..    .+..+.+++|+|+..++.++++.++..+ 
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g-  130 (301)
T d1sw6a_          52 QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-  130 (301)
T ss_dssp             ----------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-
T ss_pred             hhhhhhhcccccccccccccccchhHHHHHHHHHHHHHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-
Confidence            34555555555555544332333444444443323333333222221    2456777788888777777777776543 


Q ss_pred             hhhhhcccCCCCchHHHHHHHcCC-------HHHHHHHHHCCCCCCcccccCCCccccCCCCCcHHHHHHhcCC----HH
Q 014068           85 LSKFVNKAADGGITALHMAALNGY-------FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LK  153 (431)
Q Consensus        85 ~~~~in~~d~~G~TpLh~Aa~~g~-------~e~VklLL~~Gadvn~~d~~~~~~~~~~~~G~TpLh~Aa~~g~----~e  153 (431)
                        ..++.+|..|+||||+|+..++       .+++++|.   ..++..|..          |+||||+|+..+.    ..
T Consensus       131 --ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~----------g~t~lh~~~~~~~~~~~~~  195 (301)
T d1sw6a_         131 --SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSM----------NRTILHHIIITSGMTGCSA  195 (301)
T ss_dssp             --CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTT----------CCCHHHHHHHHHTSTTCHH
T ss_pred             --CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccc----------cCCHHHHHHHHhCccccHH
Confidence              3467777778888888877654       23344433   234444544          8888888775443    22


Q ss_pred             --------HHHHHHHCCCC-------------------------------------CcccCCCCCcHHHHHHHhCcHHHH
Q 014068          154 --------CCQVLLSRGAS-------------------------------------RMSLNCNGWLPLDVARMWGRHWLE  188 (431)
Q Consensus       154 --------ivklLL~~GAd-------------------------------------in~~d~~G~TpLh~Aa~~g~~~v~  188 (431)
                              ++.++++.+..                                     +|.+|.+|+||||+|++.|+.+++
T Consensus       196 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv  275 (301)
T d1sw6a_         196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV  275 (301)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHH
Confidence                    33444444332                                     688999999999999999999997


Q ss_pred             HHh-cCCCCCCCCCCCCC
Q 014068          189 PLL-APSSDAVMPRFHPS  205 (431)
Q Consensus       189 ~LL-~~~a~~~~~~~~~~  205 (431)
                      ++| ..++++++.+..+.
T Consensus       276 ~~Ll~~GAd~~~~n~~G~  293 (301)
T d1sw6a_         276 DALLDYGADPFIANKSGL  293 (301)
T ss_dssp             HHHHHTTCCTTCCCTTSC
T ss_pred             HHHHHCCCCCCCCCCCCC
Confidence            655 55788888765544

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3.9e-05  Score=57.17  Aligned_cols=53  Identities=26%  Similarity=0.592  Sum_probs=42.2

Q ss_pred             CchhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecC
Q 014068          235 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  298 (431)
Q Consensus       235 ~~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~  298 (431)
                      ...|.+|++..-.....+|||.+|..|+..+-...           ...||+||..|.+...+.
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~-----------~~~CP~Cr~~i~~~~~i~   75 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-----------GQGCPFCRCEIKGTEPIV   75 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTT-----------CCSCTTTCCCCCCCCCSS
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHC-----------cCcCCCCCcCccCCceee
Confidence            35699999999999999999999999998774321           124999999998776553

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.06  E-value=4.9e-05  Score=54.88  Aligned_cols=49  Identities=33%  Similarity=0.730  Sum_probs=37.8

Q ss_pred             Cchhhhhhccccc-hhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccce
Q 014068          235 ADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  295 (431)
Q Consensus       235 ~~~C~vcle~~~~-va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~  295 (431)
                      .+.|.||++.... +...+|||.+|.+|+..+-...+            .||+||.+|..+.
T Consensus         5 ~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~------------~CP~CR~~i~~~~   54 (68)
T d1chca_           5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP------------TCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC------------STTTTCCCCCCEE
T ss_pred             CCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCC------------cCCCCCcchHhhc
Confidence            4679999998754 45689999999999987754421            4999999987654

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00036  Score=54.36  Aligned_cols=47  Identities=34%  Similarity=0.812  Sum_probs=35.5

Q ss_pred             hhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          237 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       237 ~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .|.+|++..-.....+|||.+|..|+..+-....         +...||+||..+.
T Consensus        23 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          23 ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK---------GPSQCPLCKNDIT   69 (103)
T ss_dssp             SCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS---------SSCCCTTTSCCCC
T ss_pred             CCCccCchhCCeEEcCCCCchhhHHHHHHHHHCC---------CCCcCcCCCCcCC
Confidence            4889998877777788999999999987754321         1135999998764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.34  E-value=0.00042  Score=47.52  Aligned_cols=47  Identities=32%  Similarity=0.676  Sum_probs=34.0

Q ss_pred             CCchhhhhhccccc---h-hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          234 DADTCAVCLERACT---V-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       234 ~~~~C~vcle~~~~---v-a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      +...|.||++..-.   + ....|||.++..|+..+=...+            .||+||..|+
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~------------~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS------------TCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC------------SCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC------------cCCCCCCEeE
Confidence            34569999987542   2 3457999999999988753321            4999998874

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.00057  Score=48.54  Aligned_cols=47  Identities=23%  Similarity=0.534  Sum_probs=33.9

Q ss_pred             Cchhhhhhccc-----cchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          235 ADTCAVCLERA-----CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       235 ~~~C~vcle~~-----~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      ...|.||++..     ..+...+|||.+|..|+..+-...+           ..||+||..|.
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----------~~CP~CR~~i~   54 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA-----------GNCPECGTPLR   54 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS-----------SSCTTTCCCCS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc-----------CCCCCCCcCcc
Confidence            35688998742     3345678999999999998854321           14999998764

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0006  Score=51.26  Aligned_cols=46  Identities=24%  Similarity=0.574  Sum_probs=36.6

Q ss_pred             hhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          237 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       237 ~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .|.+|++..-..+..+|||.+|-.|+.+.-....           ..||.||.++..
T Consensus        25 ~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~-----------~~CP~Cr~p~~~   70 (86)
T d1rmda2          25 SCQICEHILADPVETSCKHLFCRICILRCLKVMG-----------SYCPSCRYPCFP   70 (86)
T ss_dssp             BCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-----------SBCTTTCCBCCG
T ss_pred             CCccCCcchhcceecCCCChhhHHHHHHHHhhCC-----------CcCcccCCCCCh
Confidence            5999999998889999999999999987642211           249999987653

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.001  Score=52.51  Aligned_cols=50  Identities=26%  Similarity=0.675  Sum_probs=35.0

Q ss_pred             Cchhhhhhcccc------------------chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 014068          235 ADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  291 (431)
Q Consensus       235 ~~~C~vcle~~~------------------~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I  291 (431)
                      .+.|.||++...                  .+...+|||.+|.+|+..+-...+.       .+.+.||+||..+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~-------~~~~~CP~CR~~~   92 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIY   92 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCc-------CCCCccccccchh
Confidence            356999987642                  2456789999999999877544321       2346799999654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.00029  Score=48.60  Aligned_cols=42  Identities=26%  Similarity=0.582  Sum_probs=33.4

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      -.|.+|++........+|||.+|..|+..               ....||+||+.|.
T Consensus         7 l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~---------------~~~~CP~Cr~~~~   48 (56)
T d1bora_           7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWP   48 (56)
T ss_dssp             SSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSS
T ss_pred             CCCcccCcccCCCEEecCCCHHhHHHHHc---------------CCCcCcCCCCccc
Confidence            36899999988888899999999999731               1235999998865

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0016  Score=43.90  Aligned_cols=44  Identities=25%  Similarity=0.567  Sum_probs=30.7

Q ss_pred             hhhhhcccc----chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          238 CAVCLERAC----TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       238 C~vcle~~~----~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      |.||++..-    .+...+|||.+|..|+..+-...+           ..||+||+++.
T Consensus         3 CpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~-----------~~CP~CR~~~~   50 (52)
T d1ur6b_           3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-----------GLCPACRKPYP   50 (52)
T ss_dssp             ETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSC-----------CBCTTTCCBCS
T ss_pred             CcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcC-----------CCCCccCCcCC
Confidence            678887532    233458999999999988743221           25999998764

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.41  E-value=0.008  Score=43.77  Aligned_cols=57  Identities=12%  Similarity=0.128  Sum_probs=42.8

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCCCcc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVK  303 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~~~~  303 (431)
                      -.|.+|++..-......|||.+|..|+..+-....           ..||.|+..+..-..+|+..++
T Consensus         9 l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~-----------~~cP~~~~~l~~~~l~pN~~L~   65 (78)
T d1t1ha_           9 FRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH-----------KTCPKSQETLLHAGLTPNYVLK   65 (78)
T ss_dssp             SSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTC-----------CBCTTTCCBCSSCCCEECTTTH
T ss_pred             CCCcCcCchhhCceEccCCCcchHHHHHHHHHHCC-----------CCCCcccccCCcccccchHHHH
Confidence            45889998887777789999999999987642211           2499999988776666766554

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.94  E-value=0.0078  Score=40.96  Aligned_cols=45  Identities=9%  Similarity=0.019  Sum_probs=33.8

Q ss_pred             hhhhhhccccchhcc-CCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccccc
Q 014068          237 TCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  293 (431)
Q Consensus       237 ~C~vcle~~~~va~~-~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~  293 (431)
                      .|.+|++..-..+.. .|||.+|.+|+.++=....            .||+||+.+..
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~------------~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------------NDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------------BCTTTCCBCCG
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc------------CCCccCCcCCH
Confidence            477888877665554 6999999999888765532            49999987664

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.011  Score=44.10  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=25.6

Q ss_pred             chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          247 TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       247 ~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .+...+|||.++..|+...=...+            .||+||++-+
T Consensus        51 ~~~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHAFHFHCISRWLKTRQ------------VCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCEEEHHHHHHHHTTCS------------BCSSSCSBCC
T ss_pred             CeEEccccCcccHHHHHHHHHHCC------------cCCCCCCccc
Confidence            456778999999999988854322            4999998743

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.0023  Score=48.93  Aligned_cols=42  Identities=24%  Similarity=0.589  Sum_probs=31.0

Q ss_pred             hhhhhhccccchh-ccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccc
Q 014068          237 TCAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  292 (431)
Q Consensus       237 ~C~vcle~~~~va-~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~  292 (431)
                      .|.+|++..-... ..+|||.+|..|+..+-.              ..||.||..+.
T Consensus        24 ~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------------~~CP~Cr~~~~   66 (97)
T d1jm7b_          24 RCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------------TGCPVCYTPAW   66 (97)
T ss_dssp             SCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------------TBCSSSCCBCS
T ss_pred             CCccCCchhhcCceeCCCCCchhHHHHHHHHh--------------ccccccCCcCc
Confidence            5889998775544 458999999999865521              13999997764

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.46  E-value=0.008  Score=44.01  Aligned_cols=56  Identities=7%  Similarity=-0.092  Sum_probs=39.7

Q ss_pred             chhhhhhccccchhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccceecCCCCc
Q 014068          236 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  302 (431)
Q Consensus       236 ~~C~vcle~~~~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I~~~~~l~~~~~  302 (431)
                      -.|.+|++-.-.....+|||.+|..|+...=....           ..||+||..+..-...|+..+
T Consensus         8 l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~-----------~~cP~c~~~l~~~~l~pN~~L   63 (80)
T d2c2la2           8 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-----------HFNPVTRSPLTQEQLIPNLAM   63 (80)
T ss_dssp             TBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-----------SSCTTTCCCCCGGGCEECHHH
T ss_pred             ccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCC-----------ccCCCccccccccccccHHHH
Confidence            35888888877777889999998888877532211           249999998775555555433

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=90.12  E-value=0.046  Score=37.34  Aligned_cols=48  Identities=17%  Similarity=0.351  Sum_probs=30.9

Q ss_pred             CCchhhhhhccccch-----hccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCccccccc
Q 014068          234 DADTCAVCLERACTV-----AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  291 (431)
Q Consensus       234 ~~~~C~vcle~~~~v-----a~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr~~I  291 (431)
                      +...|.||++..-..     ...+|+|.++..||...-....          ...||+||..+
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~----------~~~CP~Cr~~~   57 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR----------NTACQICGVVY   57 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT----------CSBCTTTCCBC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCC----------CCCCcccCCee
Confidence            456799999865433     3445568887778777643321          12599999764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.044  Score=40.96  Aligned_cols=52  Identities=21%  Similarity=0.459  Sum_probs=33.7

Q ss_pred             CCCchhhhhhcccc---chhccCCChHHHHHHHHHhhhcCCCCCCCCCCCCCCCCcccc
Q 014068          233 DDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  288 (431)
Q Consensus       233 ~~~~~C~vcle~~~---~va~~~CgH~~C~~cll~~ga~~n~~~~~~~~p~~~~CP~Cr  288 (431)
                      ++...|.||++...   .+....|||.+|..|+...-... +.+   +.-..+.||.|.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~-i~~---~~~~~i~CP~~~   57 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL-IKE---GLETAISCPDAA   57 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHH-HHH---CSCCCEECSCTT
T ss_pred             CCCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHH-Hhc---CCccccCCcCCC
Confidence            45567999998753   24556899999999998765432 111   112246799854