Citrus Sinensis ID: 014100
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 359488288 | 1340 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.946 | 0.303 | 0.364 | 2e-48 | |
| 224083436 | 758 | predicted protein [Populus trichocarpa] | 0.834 | 0.473 | 0.303 | 3e-41 | |
| 255542484 | 2460 | phosphoprotein phosphatase, putative [Ri | 0.844 | 0.147 | 0.314 | 5e-40 | |
| 147787802 | 1517 | hypothetical protein VITISV_005047 [Viti | 0.853 | 0.241 | 0.294 | 1e-37 | |
| 302143647 | 759 | unnamed protein product [Vitis vinifera] | 0.860 | 0.487 | 0.282 | 1e-37 | |
| 358344895 | 906 | Resistance protein RGC2, partial [Medica | 0.809 | 0.384 | 0.325 | 9e-37 | |
| 357439633 | 1039 | Rpp4 candidate [Medicago truncatula] gi| | 0.823 | 0.340 | 0.284 | 4e-35 | |
| 147826471 | 1271 | hypothetical protein VITISV_031250 [Viti | 0.830 | 0.280 | 0.284 | 1e-34 | |
| 255574526 | 1232 | Disease resistance protein RFL1, putativ | 0.672 | 0.234 | 0.296 | 7e-34 | |
| 255581680 | 1126 | Disease resistance protein RPS2, putativ | 0.802 | 0.306 | 0.304 | 4e-33 |
| >gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 232/442 (52%), Gaps = 35/442 (7%)
Query: 1 MTRCPNM-KTFSQG---IVSTPKLHEVQVKGELRRWE-GNLNSTIQKCYEEMIGFRDIKY 55
MTRC +M + QG I V + ELR +L I C+EE +
Sbjct: 847 MTRCKSMGEIVPQGRKEIKDGDDAVNVPLFPELRYLTLQDLPKLINFCFEENLMLSKPVS 906
Query: 56 LQLGHFPRL---QEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 112
G L E+W+GQ L +SF NLR L++ +C ++L P++L + L NL L+V
Sbjct: 907 TIAGRSTSLFNQAEVWNGQ-LSLSF-GNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLKV 964
Query: 113 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPE----- 167
NC+ LEE+ LE LN D H+G L PKL E+ L L+ IIE+ +
Sbjct: 965 ENCNQLEEIFDLEGLNVDGGHVG-LLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFPV 1023
Query: 168 -----LRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTD--QIQPLFDEK- 219
LR L+I D+ I +S++ EKLT + + Q++ L DE+
Sbjct: 1024 ESFCRLRVLSICEYRDILVVIPSSMLQRL---HTLEKLTVRSCGSVKEVVQLEGLVDEEN 1080
Query: 220 --VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL 277
A +LR LEL+ L ++++LWKEN F NL LKI +C L LV S NL
Sbjct: 1081 HFRALARLRELELNDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHNL 1140
Query: 278 ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGY 337
A+L++S C LIN+L ++SLV KI M+++++ + GE A + F +L
Sbjct: 1141 ASLDISYCCSLINLLPPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKLEE 1199
Query: 338 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGD 397
+ L LP+LTSFC G Y+L FP LE VVV +CP MKIFSQG++ P+L++V E G+
Sbjct: 1200 IELCVLPNLTSFCSGVYSLSFPVLERVVVEECPKMKIFSQGLLVTPRLDRV-----EVGN 1254
Query: 398 DEGCWEGNLNDTIKKLFNEMNS 419
++ W+ +LN TI LFN N+
Sbjct: 1255 NKEHWKDDLNTTIHLLFNTCNA 1276
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083436|ref|XP_002307026.1| predicted protein [Populus trichocarpa] gi|222856475|gb|EEE94022.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 210/432 (48%), Gaps = 73/432 (16%)
Query: 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNL 107
+GF +K L++ FP+L++ WH Q LP +FF+NL L VD+ L A+P+ L++ +N+L
Sbjct: 326 VGFDGVKRLKVSDFPQLKKRWHCQ-LPFNFFSNLTSLTVDEYCYSLDALPSTLLQFMNDL 384
Query: 108 RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMP 166
L+VRNCD LE V L+ L ++ + P L+EL L+ L L+ CN + I+E
Sbjct: 385 LELQVRNCDLLEGVFDLKGLGPEEGRV--WLPCLYELNLIGLSSLRHICNTDPQGILEFR 442
Query: 167 ELRYLAIENCPDMETF----ISNSVVH----VTTDNKEPEKLTSEENFFLTDQIQPLFDE 218
L +L + +C + ++ S+VH V + + E++ ++E + +
Sbjct: 443 NLNFLEVHDCSSLINIFTPSMALSLVHLQKIVIRNCDKMEEIITKERAGEEEAMN----- 497
Query: 219 KVAFPQLRYLELSRLHKVQHLW-------------------------------------- 240
K+ FP L+ + L L ++ +++
Sbjct: 498 KIIFPVLKVIILESLPELSNIYSGSGVLNLTSLEEICIDDCPNMKIFISSLVEEPEPNSV 557
Query: 241 ------KENDESNKAFANLIRLKISECSKLQKL---------VTPSWHLENLATLEVSKC 285
++ N F L+ K++ +L+KL VT + C
Sbjct: 558 GKGKEQRQGQGGNYNFTALLNYKVA-FPELKKLRVDWNTIMEVTQRGQFRTEFFCRLKSC 616
Query: 286 HGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345
GL+N+ T ST++SLV L ++ IA CK + ++ Q G+EA ++F +L YL L L +
Sbjct: 617 LGLLNLFTSSTAKSLVQLVKLTIAHCKKMTVVVARQGGDEADDEIIFSKLEYLELLDLQN 676
Query: 346 LTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGN 405
LTSFC NYA FPSL+ +VV +CP MK FS GV+ PKL V + W GN
Sbjct: 677 LTSFCFENYAFRFPSLKEMVVEECPNMKSFSPGVLSTPKLQGVHWKKYSKNTVH--WHGN 734
Query: 406 LNDTIKKLFNEM 417
L+ TI+ L+ EM
Sbjct: 735 LDITIQHLYTEM 746
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 210/429 (48%), Gaps = 66/429 (15%)
Query: 1 MTRCPNMKTFSQGIVSTPKLHEVQVKGELRRWE--GNLNSTIQKCYEEMIGFRDIKYLQL 58
+T CP M+ FS GI++ PKL +V + E +W G+LN+T Q+ Y EM+G +++LQL
Sbjct: 1516 VTACPRMEFFSHGIITAPKLEKVSLTKEGDKWRSVGDLNTTTQQLYREMVGLNGVQHLQL 1575
Query: 59 GHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118
FP L E WH Q LP FF NL+ LVVD+C+ S++P+NL+ LN L LEVRNCDSL
Sbjct: 1576 SEFPTLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLEVRNCDSL 1634
Query: 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR-----------FCNFTE-NIIEMP 166
+V E N D + G L P L + L+DLP+L+ F N T NI
Sbjct: 1635 AKVFDFEWSN-DYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTVLNIHNCS 1692
Query: 167 ELRYL---------------AIENCPDMETFIS---------NSVVHVTTDNKEPEKLTS 202
LRY+ + NC ++ I N ++ + E L S
Sbjct: 1693 SLRYIFNPIICMGLVQLQEVEVRNCALVQAIIREGLAKEEAPNEIIFPLLKSISLESLPS 1752
Query: 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 262
NFF I V P L+ + + + + A +I K+ E S
Sbjct: 1753 LINFFSGSGI-------VRCPSLKEITIVNCPATFTCTLLRESESNATDEIIETKV-EFS 1804
Query: 263 KLQKL------VTPSWH---------LENLATLEVSKCHGLINVLTLSTSESLVNLGRMK 307
+L+ L + WH +++LA+L V C L + L+ S ++LV+L +++
Sbjct: 1805 ELKILKLFSINIEKIWHAHQLEMYASIQHLASLTVDGCGHLKHALSSSMVQTLVHLKKLE 1864
Query: 308 IADCKMIEQIIQLQ-VGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 366
+ +C+M+E++I + EE+ ++ +L +L L LP L F N +EFP ++ + +
Sbjct: 1865 VCNCRMMEEVIATEGFEEESTSRMLLRQLEFLKLKDLPELAQFFTSNL-IEFPVMKELWL 1923
Query: 367 RQCPTMKIF 375
+ CP + F
Sbjct: 1924 QNCPKLVAF 1932
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 205/425 (48%), Gaps = 58/425 (13%)
Query: 45 EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL 104
+E + + L L P++++IW+ + F NL+ + +D+C ++ + PA+L+R L
Sbjct: 1021 KEGVTVTQLSQLILRSLPKVEKIWNEDPHGILNFQNLQSITIDECQSLKNLFPASLVRDL 1080
Query: 105 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE 164
L+ L V C +EE++ + N +FPK+ L L L +L+ F
Sbjct: 1081 VQLQELHVLCC-GIEEIVAKD--NGVDTQATFVFPKVTSLELSYLHQLRSFYPGAHPSW- 1136
Query: 165 MPELRYLAIENCPDMETFISNS--------------------------VVHVTTDNKEPE 198
P L+ L + C + F + + +T D+ +
Sbjct: 1137 WPSLKQLTVRECYKVNVFAFENPTFRQRHHEGNLDMPLSLLQPVEFPNLEELTLDHNKDT 1196
Query: 199 KLTSEENFFLTDQIQPL--FDEKVAFPQLRYLE----------LSRLHKV--------QH 238
++ E+ F D L D+ + F ++ LE L RL ++ H
Sbjct: 1197 EIWPEQ--FPVDSFPRLRVLDDVIQFKEVFQLEGLDNENQAKRLGRLREIWLCDLPELTH 1254
Query: 239 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298
LWKEN + +L L++ C +L LV S +NLATL+V C L ++++ S ++
Sbjct: 1255 LWKENSKPGLDLLSLKSLEVRNCVRLINLVPSSASFQNLATLDVQSCGSLRSLISPSVAK 1314
Query: 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEF 358
SLV L +KI M+E+++ + GE A + F +L ++ L CL +LTSF G Y F
Sbjct: 1315 SLVKLKTLKIGGSHMMEEVVANEEGEAADE-IAFCKLQHMALKCLSNLTSFSSGGYIFSF 1373
Query: 359 PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMN 418
PSLEH+V+++CP MKIFS G+V P+L ++K GDDE W+ +LN TI LF +
Sbjct: 1374 PSLEHMVLKKCPKMKIFSPGLVTTPRLERIKV-----GDDEWHWQDDLNTTIHNLFINKH 1428
Query: 419 SKEKI 423
+E I
Sbjct: 1429 DEETI 1433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/456 (28%), Positives = 211/456 (46%), Gaps = 86/456 (18%)
Query: 45 EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL 104
+E + + L L P++++IW+ + F NL+ + +D C ++ + PA+L++ L
Sbjct: 304 KEGVTVTQLSQLILRLLPKVEKIWNKDPHGILNFQNLKSIFIDKCQSLKNLFPASLVKDL 363
Query: 105 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE 164
L LE+R+C +EE++ + N + +FPK+ L L++L +L+ F + +
Sbjct: 364 VQLEKLELRSC-GIEEIVAKD--NEAETAAKFVFPKVTSLILVNLHQLRSFYP-GAHTSQ 419
Query: 165 MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ-PLFDEKV--- 220
P L+ L + C + F S + ++ + S + FL Q+ P +E +
Sbjct: 420 WPLLKELIVRACDKVNVFASETPTFQRRHHEGSFDMPSLQPLFLLQQVALPYLEELILND 479
Query: 221 --------------AFPQLRYLE---------------LSRLHKVQ-------------- 237
+FP+LRYL+ L R H ++
Sbjct: 480 NGNTEIWQEQFPMDSFPRLRYLKVYGYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIF 539
Query: 238 -----------------------------HLWKENDESNKAFANLIRLKISECSKLQKLV 268
HLWKEN +S +L L++ C L LV
Sbjct: 540 QLEGLDEENQAQRLGRLREIWLRDLPALTHLWKENSKSILDLQSLESLEVWNCDSLISLV 599
Query: 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 328
S +NL TL+V C L ++++ S ++SLV L ++KI M+E+++ + G EA
Sbjct: 600 PCSVSFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKLKIGGLHMMEEVVANE-GGEAVD 658
Query: 329 CVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKV 388
+ F +L ++ L CLP+LTSF G Y FPSLEH+VV +CP MKIFS +V PKL +V
Sbjct: 659 EIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSPSLVTTPKLERV 718
Query: 389 KPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKIE 424
E DDE W +LN TI LF + + ++E
Sbjct: 719 -----EVADDEWHWHNDLNTTIHNLFKKTHGNVEVE 749
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 190/362 (52%), Gaps = 14/362 (3%)
Query: 53 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 112
+K L+L + P+L+ +W F NL + V DC +++S P ++ R + L+ L V
Sbjct: 113 LKKLKLSNLPKLKHVWKEDPHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLV 172
Query: 113 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172
NC +EE++ EE E + +FP L + L +L KLK F ++ + L+ +
Sbjct: 173 SNC-GIEEIVVKEE--GPDEMVKFVFPHLTSIELDNLTKLKAFFVGVHSL-QCKSLKTIK 228
Query: 173 IENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232
+ CP +E F + + + + +++ + F+ ++ L + PQ R LEL +
Sbjct: 229 LFKCPRIELFKAEPLKLQESSKNVEQNISTYQPLFVFEE--ELLTSVESTPQFRELELLQ 286
Query: 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292
LHK++++ KE + + L + + +CS L KLV S + LEV+ C+GLIN++
Sbjct: 287 LHKLKYICKEGFQMDPFLHFLESIDVCQCSSLIKLVPSSVTFSYMTYLEVTNCNGLINLI 346
Query: 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352
T ST++SLV L MKI C +E I+ + E+ +VF L L L L L FC
Sbjct: 347 THSTAKSLVKLTTMKIEMCNWLEDIVNGK--EDETNEIVFCSLQTLELISLQRLIRFCSC 404
Query: 353 NYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKK 412
+ FP LE VVV++CP M++FS GV + L V+ D+E EG+LN TIKK
Sbjct: 405 PCPIMFPLLEVVVVKECPRMELFSLGVTNTTNLQNVQ------TDEENHREGDLNRTIKK 458
Query: 413 LF 414
+F
Sbjct: 459 MF 460
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/419 (28%), Positives = 200/419 (47%), Gaps = 65/419 (15%)
Query: 53 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 112
+K L+L + P+L+ +W F NL + V++CT+++S P + R + L+ L V
Sbjct: 109 LKKLKLSNVPKLKHVWKEDPHDTMRFQNLSEVSVEECTSLISIFPLTVARDMMQLQSLRV 168
Query: 113 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172
NC +EE++ EE E + +F L + L LPKLK F ++ + L+ +
Sbjct: 169 SNC-GIEEIVAKEE--GTNEIVNFVFSHLTFIRLELLPKLKAFFVGVHSL-QCKSLKTIY 224
Query: 173 IENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ---------------PLFD 217
+ CP +E F + H + + +++ + F+ ++ Q +
Sbjct: 225 LFGCPKIELF-KTELRHQESSRSDVLNISTYQPLFVIEESQYSGVQFNNVKHIDVCEFYT 283
Query: 218 EKVAFP----------------------------------------QLRYLELSRLHKVQ 237
E+ FP +L+ LEL +LH++Q
Sbjct: 284 EEATFPYWFLKNVPSLESLLVQWSLFTEIFQGEQLISTEKETQISPRLKQLELGQLHRLQ 343
Query: 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTS 297
++ KE + + + + ++ CS L KLV S L LEV+ C+GLIN++T ST+
Sbjct: 344 YICKEGFKMDPILHFIESINVNHCSSLIKLVPSSVTFTYLTYLEVTSCNGLINLITYSTA 403
Query: 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALE 357
+SLV L MKI C ++E I+ + E + + F L L L LP + FC +
Sbjct: 404 KSLVKLTTMKIKMCNLLEDIVNGKEDETKE--IEFCSLQSLELISLPRVCRFCSCPCPIT 461
Query: 358 FPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNE 416
FP LE VVV++CP M++ S GV + P L V+ E+ ++E WEG+LN ++KKLF++
Sbjct: 462 FPLLEVVVVKECPRMELLSLGVTNTPNLQIVQI---EESNEENHWEGDLNRSVKKLFDD 517
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147826471|emb|CAN72797.1| hypothetical protein VITISV_031250 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 123/432 (28%), Positives = 200/432 (46%), Gaps = 75/432 (17%)
Query: 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLR 108
F ++ L + + ++ +WH Q SF+ L+HL V C +L+ P ++ + L L
Sbjct: 842 AFPXLEXLHVENLDNVRALWHNQLSADSFYK-LKHLHVASCNKILNVFPLSVAKALVQLE 900
Query: 109 WLEVRNCDSLEEVLHLEELNADKEHIGPLF--PKLFELTLMDLPKLKRFCNFTENIIEMP 166
L + +C+ LE ++ E+ + D++ PLF PKL TL L +LKRF + P
Sbjct: 901 DLCILSCEXLEVIVVNEDEDEDEDETTPLFLFPKLTSFTLESLHQLKRFYS-GRFASRWP 959
Query: 167 ELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDE-------- 218
L+ L + NC +E + DNK + L F + + P +E
Sbjct: 960 LLKELKVCNCDKVEILFQEIGLEGELDNKIQQSL-----FLVEKEAFPNLEELRLTLKGX 1014
Query: 219 ---------KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS------K 263
+V+F +LR L +++ H + + N + NL RL++++C +
Sbjct: 1015 VEIWRGQFSRVSFSKLRVLNITKCHGILVVISSN--MVQILHNLERLEVTKCDSVNEVIQ 1072
Query: 264 LQKLVTPSWH---------------------------LENLATLEVSKCHGLINVLTLST 296
+++L + +H L++ TLE+ C LIN++TLS
Sbjct: 1073 VERLSSEEFHVDTLPRLTEIHLEDLPMLMHLSGLSRYLQSFETLEIVSCGSLINLVTLSM 1132
Query: 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356
++ LV L + I +C M+++I+ + E + F L L LDCLP+L SFC YA
Sbjct: 1133 AKRLVQLKTLIIKECHMVKEIVANEGDEPPNDEIDFTRLTRLELDCLPNLKSFCSARYAF 1192
Query: 357 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDD--------------EGCW 402
FPSLE + V CP MK F +GV+D P+L V+ + + D E CW
Sbjct: 1193 RFPSLEEISVAACPKMKFFCKGVLDTPRLKCVQTGDHSEVLDTPRLQCVQMGDLFFERCW 1252
Query: 403 EGNLNDTIKKLF 414
E +LN TI K+F
Sbjct: 1253 ESDLNTTIHKMF 1264
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 170/354 (48%), Gaps = 65/354 (18%)
Query: 65 QEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHL 124
+ IWHG+ ++L+ L+V++C + ++IR L LE+ NC+ +E ++
Sbjct: 934 ETIWHGELSTAC--SHLKSLIVENCRDWKYLFTLSMIRSFIRLEKLEICNCEFMEGIIRT 991
Query: 125 EELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF-I 183
EE + ++ I +FP+ L +L ++N D+ + I
Sbjct: 992 EEFSEEEGMIKLMFPR---------------------------LNFLKLKNLSDVSSLRI 1024
Query: 184 SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN 243
+ ++ P LR+LEL+RL+ ++++W N
Sbjct: 1025 GHGLIEC--------------------------------PSLRHLELNRLNDLKNIWSRN 1052
Query: 244 DESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 303
+ N+ LK+ C L L PS +NL LEV C +IN++T S + S+V L
Sbjct: 1053 IHFDPFLQNVEILKVQFCENLTNLAMPSASFQNLTCLEVLHCSKVINLVTSSVATSMVQL 1112
Query: 304 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 363
M I DC M+ I+ + E A G ++F +L L L L +LTSFCL FPSLE
Sbjct: 1113 VTMHIEDCDMLTGIVADEKDETA-GEIIFTKLKTLALVRLQNLTSFCLRGNTFNFPSLEE 1171
Query: 364 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEM 417
V V +CP +++FS G+ A KL +V E +D+ WEGNLN TI+++++EM
Sbjct: 1172 VTVAKCPKLRVFSPGITIASKLERV--LIEFPSEDKWRWEGNLNATIEQMYSEM 1223
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581680|ref|XP_002531643.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223528728|gb|EEF30739.1| Disease resistance protein RPS2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 195/420 (46%), Gaps = 75/420 (17%)
Query: 68 WHGQALPVSF-FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126
W G SF F NL+ L V C+ + ++ L L+ LEV++CD + E+++ E
Sbjct: 712 WQG-----SFDFKNLKILKVHSCSKLRYVFTPSMCLGLVQLQELEVKSCDVMAEIIN-EG 765
Query: 127 LNADKEHIGPLFPKLFELTLMDLPKLKRF-------------------------CNF--- 158
L ++ + LFP L + L LP+L F C F
Sbjct: 766 LAMEETNKEVLFPLLNSIILESLPRLINFSSGSSVVQCPSLKEIRIVDCPTAFTCTFLGE 825
Query: 159 -----TENIIE----MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF-- 207
T IIE P L L I N +++ S+ + + + K+ E
Sbjct: 826 AEANATHGIIEPEVVFPNLEELQILNMDNLKMIWSSQLQSDSFGKVKVLKMEQSEKLLKI 885
Query: 208 -----------LTDQI-------QPLFD--------EKVAFPQLRYLELSRLHKVQHLWK 241
L D I + +FD EKVA QLR L + L ++H+W
Sbjct: 886 YPSGMLRSLRNLEDLIIKKCSTLEVVFDLKEVTNIKEKVA-SQLRKLVMEDLPNLKHVWN 944
Query: 242 ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301
E+ +F L + +S+C L L S ++L TL++ KC+ L +++ ST++SL+
Sbjct: 945 EDRLGLVSFDKLSSVYVSQCDSLITLAPSSACFQSLTTLDLVKCNKLESLVASSTAKSLI 1004
Query: 302 NLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSL 361
L M I +C +++I+ + G+E ++F L L L CLPSL SFC + +FP L
Sbjct: 1005 QLTEMSIKECDGMKEILTNE-GDEPNEEIIFSRLRSLKLQCLPSLLSFCSSVHCFKFPFL 1063
Query: 362 EHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKE 421
V+VRQCP M++FS+G V PKL V+ E+ D E W GNLN TI++LF +M E
Sbjct: 1064 TQVIVRQCPKMQVFSRGSVITPKLQSVQQLTEDKTDKER-WSGNLNATIQQLFIDMVDDE 1122
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TAIR|locus:2171589 | 948 | AT5G47260 [Arabidopsis thalian | 0.267 | 0.121 | 0.264 | 0.00074 |
| TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 33/125 (26%), Positives = 62/125 (49%)
Query: 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311
N++ + I +Q+ + P + +N+ T+ + +C L ++ L + L G + +++C
Sbjct: 700 NILEITIDWRCTIQREIIPQF--QNIRTMTIHRCEYLRDLTWLLLAPCL---GELSVSEC 754
Query: 312 KMIEQIIQLQVGEEAKGCVV---FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368
+E++I G F+ L L LD LP L S L FP LE++V+R+
Sbjct: 755 PQMEEVISKDKAMAKLGNTSEQPFQNLTKLVLDGLPKLESIYWT--PLPFPVLEYLVIRR 812
Query: 369 CPTMK 373
CP ++
Sbjct: 813 CPELR 817
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 3e-06 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 38/286 (13%)
Query: 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAI 96
S ++K ++ + ++ + L L+EI P +S NL L + DC++++ +
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLVE-L 673
Query: 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156
P++ I+ LN L L++ C++LE + G L+ L L +LK F
Sbjct: 674 PSS-IQYLNKLEDLDMSRCENLEIL-----------PTGINLKSLYRLNLSGCSRLKSFP 721
Query: 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLF 216
+ + NI + +L AIE P S + + +N + L ++ L +++QPL
Sbjct: 722 DISTNISWL-DLDETAIEEFP--------SNLRL--ENLDELILCEMKSEKLWERVQPLT 770
Query: 217 D-EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275
+ P L L LS + + L S + L L+I C L+ L T +LE
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETLPT-GINLE 825
Query: 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM-IEQIIQL 320
+L +L++S C L +ST+ S +NL R I + IE+ L
Sbjct: 826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871
|
syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.86 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.85 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.84 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.69 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.69 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.6 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.58 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.5 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.43 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.39 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.38 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.36 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.36 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.29 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.14 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.14 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.09 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.02 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.84 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.84 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.79 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.76 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.65 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.57 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.48 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.44 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.35 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.32 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.29 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.18 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.14 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.06 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.06 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.05 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.02 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.93 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.9 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.67 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.63 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.61 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 97.49 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.48 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 97.28 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 97.27 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.06 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 97.02 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 96.97 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.92 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.81 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.54 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 96.09 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 95.83 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.66 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.64 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 95.18 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.13 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 95.12 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 94.49 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 93.97 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.91 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 93.83 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 92.63 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 92.24 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 90.94 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 90.86 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 89.75 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 89.66 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 88.9 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 88.75 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 86.07 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 84.52 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=231.64 Aligned_cols=300 Identities=19% Similarity=0.305 Sum_probs=202.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..++.+|... .+.+|++|++.++. +..+|.+. ..+++|+.|++++|.++..++. +..+++|++|++++|..
T Consensus 599 ~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~ 669 (1153)
T PLN03210 599 YPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSS 669 (1153)
T ss_pred CCCCCCCCcC-CccCCcEEECcCcc-cccccccc----ccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCC
Confidence 4455665554 56899999999875 88888877 7899999999999877776543 66789999999999988
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNK 195 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~ 195 (430)
+..+ |..+ ..+++|+.|++++|..++.+|.. ..+++|+.|++++|..+..+| +.+|++|+++++
T Consensus 670 L~~l---------p~si-~~L~~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 670 LVEL---------PSSI-QYLNKLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred cccc---------chhh-hccCCCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 8777 6665 88999999999999999988764 268999999999999888877 568999999998
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCc----hhhhhcccccEEeeccCcccccccCCc
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND----ESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~----~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
.+..+++ ...+++|++|.+.++... .++.... .....+++|+.|++++|+.+..+|..+
T Consensus 736 ~i~~lP~----------------~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 736 AIEEFPS----------------NLRLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred ccccccc----------------cccccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCccccChhh
Confidence 8665441 123556666666553211 1110000 000233567777777766666666666
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecC
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 351 (430)
..+++|+.|++++|..++.+|.. ..+++|+.|++++|..+..+.. ...+|+.|++.+. .++.++.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~-----------~~~nL~~L~Ls~n-~i~~iP~ 863 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD-----------ISTNISDLNLSRT-GIEEVPW 863 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc-----------cccccCEeECCCC-CCccChH
Confidence 66777777777777666666542 2466677777777766554421 0345556665552 4555543
Q ss_pred CCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 352 GNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
. ...+++|++|++.+|++++.+|.....+++|+.+++++|.
T Consensus 864 s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 864 W--IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred H--HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 2 2235666666666666666666555555666666665554
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=207.03 Aligned_cols=286 Identities=24% Similarity=0.370 Sum_probs=209.9
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
.+.+..++.+...+++|+.|+++++..+..++. ...+++|+.|++++|..+..++.. +..+++|+.|++++|.
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCE 692 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCC
Confidence 366788888889999999999999887775442 256899999999999888876543 7889999999999999
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEe
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTT 192 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l 192 (430)
.++.+ |..+ .+++|+.|++++|..+..+|. ...+|++|++.++. ++.+| .++|++|.+
T Consensus 693 ~L~~L---------p~~i--~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 693 NLEIL---------PTGI--NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELIL 754 (1153)
T ss_pred CcCcc---------CCcC--CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCc-cccccccccccccccccc
Confidence 88877 5543 689999999999988877653 24688999998875 56666 356777777
Q ss_pred cCCCCCcccCCCcceeccCccccCC-cCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFD-EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
.++....... . ...+.. ....+++|+.|++++++.+..++ ..+ ..+++|+.|++.+|..+..+|...
T Consensus 755 ~~~~~~~l~~--~------~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP-~si---~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 755 CEMKSEKLWE--R------VQPLTPLMTMLSPSLTRLFLSDIPSLVELP-SSI---QNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccchhhccc--c------ccccchhhhhccccchheeCCCCCCccccC-hhh---hCCCCCCEEECCCCCCcCeeCCCC
Confidence 6644222110 0 000000 01235789999999887777664 334 788899999999998888887665
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecC
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 351 (430)
.+++|+.|++++|..+..+|. ...+|++|++.++ .+++++ .....+++|+.|++.+|++++.++.
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP--------~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVP--------WWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred -CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccCh--------HHHhcCCCCCEEECCCCCCcCccCc
Confidence 788999999999988877653 2467888888764 444432 2334478888888888888888776
Q ss_pred CCcccCCCCccEEEeccCCCCcccc
Q 014100 352 GNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~l~ 376 (430)
.. ..+++|+.+++.+|..++.++
T Consensus 888 ~~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 888 NI--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cc--ccccCCCeeecCCCccccccc
Confidence 33 347888888888888876544
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-21 Score=208.07 Aligned_cols=310 Identities=16% Similarity=0.114 Sum_probs=157.4
Q ss_pred hhhhccc-CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccE
Q 014100 42 KCYEEMI-GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 42 ~l~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 120 (430)
.+|..+. .+++|++|+++++. +.. . .+...+++|++|++++| .+....|.. ++.+++|++|++++|.....
T Consensus 108 ~ip~~~~~~l~~L~~L~Ls~n~-l~~----~-~p~~~l~~L~~L~Ls~n-~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~ 179 (968)
T PLN00113 108 PIPDDIFTTSSSLRYLNLSNNN-FTG----S-IPRGSIPNLETLDLSNN-MLSGEIPND-IGSFSSLKVLDLGGNVLVGK 179 (968)
T ss_pred cCChHHhccCCCCCEEECcCCc-ccc----c-cCccccCCCCEEECcCC-cccccCChH-HhcCCCCCEEECccCccccc
Confidence 4554444 66777777777665 221 1 22245677777777776 333333433 66677777777777743323
Q ss_pred eeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCC
Q 014100 121 VLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNK 195 (430)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~ 195 (430)
+ |..+ ..+++|++|+++++.....+|.. +..+++|+.|++.+|.....+| .++|++|++++|
T Consensus 180 ~---------p~~~-~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 180 I---------PNSL-TNLTSLEFLTLASNQLVGQIPRE---LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred C---------Chhh-hhCcCCCeeeccCCCCcCcCChH---HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc
Confidence 3 3333 66777777777766544444433 5667777777777765433343 456777777777
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCC
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 275 (430)
.+.+..+ ...+.+++|+.|+++++ .+....+..+ ..+++|+.|++++|.....+|..+..++
T Consensus 247 ~l~~~~p--------------~~l~~l~~L~~L~L~~n-~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 247 NLTGPIP--------------SSLGNLKNLQYLFLYQN-KLSGPIPPSI---FSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred eeccccC--------------hhHhCCCCCCEEECcCC-eeeccCchhH---hhccCcCEEECcCCeeccCCChhHcCCC
Confidence 6443221 12333444555555443 2222222222 3444455555544433333333344444
Q ss_pred CCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccc----------------ccccCCcceeecccceee
Q 014100 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ----------------VGEEAKGCVVFEELGYLG 339 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~----------------~~~~~~~~~~~~~L~~L~ 339 (430)
+|+.|+++++.....++. .+..+++|+.|++.+|.....+...- .+..+......++|+.|+
T Consensus 309 ~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPV--ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCcEEECCCCccCCcCCh--hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 444444444332222221 12334444444444432211110000 000011112244555566
Q ss_pred cccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 340 LDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 340 l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+.++.-...++. ....+++|++|++.+|.....+|..+..+++|+.++++++.
T Consensus 387 l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 387 LFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence 555432223332 22347788888888876666677777778888888887754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-20 Score=203.38 Aligned_cols=351 Identities=13% Similarity=0.089 Sum_probs=178.1
Q ss_pred cccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeec
Q 014100 9 TFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDD 88 (430)
Q Consensus 9 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 88 (430)
..|..+..+++|+++.+.+.. -...+|..+..+++|++|+++++.-...++... ..+++|++|++++
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~---------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~ 245 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQ---------LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI----GGLTSLNHLDLVY 245 (968)
T ss_pred cCChhhhhCcCCCeeeccCCC---------CcCcCChHHcCcCCccEEECcCCccCCcCChhH----hcCCCCCEEECcC
Confidence 345556677888888874321 011244445555555555555544111111111 3445555555555
Q ss_pred CcCCCcCCchhHHhhcCCCCEEEEecCCCccEeec------------cc--cc-cCCcCCCcccccccceeecccccccc
Q 014100 89 CTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH------------LE--EL-NADKEHIGPLFPKLFELTLMDLPKLK 153 (430)
Q Consensus 89 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~------------~~--~~-~~~~~~~~~~l~~L~~L~l~~~~~l~ 153 (430)
| ++....|.. +.++++|++|++++|.....++. +. .+ ...|.. +..+++|+.|++.++....
T Consensus 246 n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 246 N-NLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred c-eeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCC
Confidence 4 222222222 44455555555554421111100 00 00 000222 2445555555555543333
Q ss_pred ccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccC--------CCcceecc-Cc-cccCCc
Q 014100 154 RFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTS--------EENFFLTD-QI-QPLFDE 218 (430)
Q Consensus 154 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~--------~~~l~~~~-~~-~~~~~~ 218 (430)
..+.. +..+++|+.|++.+|.....+| ..+|+.|++++|.+.+..+ ++.+.+.+ .. ......
T Consensus 323 ~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 323 KIPVA---LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCChh---HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 33222 4455666666666554333333 3456666666555432111 11111111 00 011122
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
.+.+++|+.|+++++ .++...+..+ ..+++|+.|+++++.....++.....+++|+.|++++|.....+|. ..
T Consensus 400 ~~~~~~L~~L~L~~n-~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~---~~ 472 (968)
T PLN00113 400 LGACRSLRRVRLQDN-SFSGELPSEF---TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---SF 472 (968)
T ss_pred HhCCCCCCEEECcCC-EeeeECChhH---hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc---cc
Confidence 344566666666664 3443333333 5666667777766654444444455666777777776654444443 12
Q ss_pred cccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCC
Q 014100 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 378 (430)
..++|+.|++++|.....+ +.....+++|+.|++++|.-...++. ....+++|++|++++|.....+|..
T Consensus 473 ~~~~L~~L~ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAV--------PRKLGSLSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred ccccceEEECcCCccCCcc--------ChhhhhhhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCChh
Confidence 3466777777766432221 12223477888889888744444544 2234889999999998777778888
Q ss_pred CcCCCCceEEecccCCC
Q 014100 379 VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 379 ~~~~~~L~~l~l~~~~~ 395 (430)
+..+++|+.++++++..
T Consensus 543 ~~~l~~L~~L~Ls~N~l 559 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQL 559 (968)
T ss_pred HhCcccCCEEECCCCcc
Confidence 88899999999988764
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-19 Score=171.92 Aligned_cols=258 Identities=21% Similarity=0.273 Sum_probs=145.5
Q ss_pred cccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeec
Q 014100 9 TFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDD 88 (430)
Q Consensus 9 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 88 (430)
+||+...-+..++-+++ ..+.+.++|+++..+.+|++|.+.++. +..+.-.. ..+|.||.+++..
T Consensus 23 ~FP~~v~qMt~~~WLkL----------nrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL----s~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKL----------NRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL----SDLPRLRSVIVRD 87 (1255)
T ss_pred cCchhHHHhhheeEEEe----------chhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh----ccchhhHHHhhhc
Confidence 45555555666777777 557788899999999999999988776 55444333 6788888888877
Q ss_pred CcCCCcC-CchhHHhhcCCCCEEEEecCCCccEeec--------------cccccCCcCCCcccccccceeecccccccc
Q 014100 89 CTNMLSA-IPANLIRCLNNLRWLEVRNCDSLEEVLH--------------LEELNADKEHIGPLFPKLFELTLMDLPKLK 153 (430)
Q Consensus 89 c~~l~~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~--------------~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 153 (430)
+ ++... .|.. +-++..|.+||+++| ++.+++. -..+..+|..++.++..|-.|++++ +.+.
T Consensus 88 N-~LKnsGiP~d-iF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe 163 (1255)
T KOG0444|consen 88 N-NLKNSGIPTD-IFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLE 163 (1255)
T ss_pred c-ccccCCCCch-hcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhh
Confidence 6 44432 2444 446788888888877 5555521 0112233444455555555555554 2444
Q ss_pred ccccCcccccCCCCccEEEEecCCC----ccccc-CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEE
Q 014100 154 RFCNFTENIIEMPELRYLAIENCPD----METFI-SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 154 ~~~~~~~~~~~l~~L~~L~l~~c~~----l~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
.+|+. +..+..|++|++++++- ++++| ..+|+.|++++..-+ ...+..++..+.+|..+
T Consensus 164 ~LPPQ---~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT-------------l~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 164 MLPPQ---IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT-------------LDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hcCHH---HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch-------------hhcCCCchhhhhhhhhc
Confidence 44444 44455555555555542 22333 334555555544411 11122344455667777
Q ss_pred ecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEE
Q 014100 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 229 ~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 308 (430)
+++. +++..++ +.+ ..+++|+.|++++ +.++++.-......+|++|.++. +.++.+|. .+..++.|+.|++
T Consensus 228 DlS~-N~Lp~vP-ecl---y~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 228 DLSE-NNLPIVP-ECL---YKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYA 298 (1255)
T ss_pred cccc-cCCCcch-HHH---hhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHh
Confidence 7765 4555553 333 5566777777766 35555544444555666666655 24555544 2344555665555
Q ss_pred cc
Q 014100 309 AD 310 (430)
Q Consensus 309 ~~ 310 (430)
.+
T Consensus 299 n~ 300 (1255)
T KOG0444|consen 299 NN 300 (1255)
T ss_pred cc
Confidence 43
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.8e-18 Score=161.25 Aligned_cols=334 Identities=15% Similarity=0.141 Sum_probs=202.3
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
+.++|||+.|.+ -.|.+.++|.......+|+.|++.++. +..+... ....++.||.||++.+ .+.
T Consensus 98 f~nl~nLq~v~l----------~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se---~L~~l~alrslDLSrN-~is 162 (873)
T KOG4194|consen 98 FYNLPNLQEVNL----------NKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSE---ELSALPALRSLDLSRN-LIS 162 (873)
T ss_pred HhcCCcceeeee----------ccchhhhcccccccccceeEEeeeccc-cccccHH---HHHhHhhhhhhhhhhc-hhh
Confidence 456777777777 457778888888888888888888765 4432211 1245788888888875 445
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.++... +..=.++++|++++| .++.+ ..+.+..|.+|..|.++++ .++.+|... ...+|+|+.|++
T Consensus 163 ~i~~~s-fp~~~ni~~L~La~N-~It~l---------~~~~F~~lnsL~tlkLsrN-rittLp~r~--Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 163 EIPKPS-FPAKVNIKKLNLASN-RITTL---------ETGHFDSLNSLLTLKLSRN-RITTLPQRS--FKRLPKLESLDL 228 (873)
T ss_pred cccCCC-CCCCCCceEEeeccc-ccccc---------ccccccccchheeeecccC-cccccCHHH--hhhcchhhhhhc
Confidence 443222 445567888888887 55555 3444567778888888763 566665442 345788888888
Q ss_pred ecCCCccc------ccCCcceEEEecCCCCCcccC-----CCcceecc----CccccC-CcCCCCCCCcEEecccCCCce
Q 014100 174 ENCPDMET------FISNSVVHVTTDNKEPEKLTS-----EENFFLTD----QIQPLF-DEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 174 ~~c~~l~~------~~~~~L~~L~l~~~~~~~~~~-----~~~l~~~~----~~~~~~-~~~~~~~~L~~L~L~~~~~l~ 237 (430)
.++. ++. -..++|+.|.+..|++..... +.+.+..+ ...++- ..+..+.+|+.|+++. +.+.
T Consensus 229 nrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~ 306 (873)
T KOG4194|consen 229 NRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQ 306 (873)
T ss_pred cccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhh
Confidence 7654 222 225677777777776543321 12222111 112221 1234466777777776 5666
Q ss_pred eecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchh
Q 014100 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.+..... ..+++|+.|+++. +.++.+++. +..+..|++|.+++. .+..+... .+..+.+|++|++... .+..
T Consensus 307 rih~d~W---sftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~-af~~lssL~~LdLr~N-~ls~ 379 (873)
T KOG4194|consen 307 RIHIDSW---SFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEG-AFVGLSSLHKLDLRSN-ELSW 379 (873)
T ss_pred eeecchh---hhcccceeEeccc-cccccCChhHHHHHHHhhhhccccc-chHHHHhh-HHHHhhhhhhhcCcCC-eEEE
Confidence 6666665 6667777777776 355555433 345667777777664 34444332 2445778888887663 3333
Q ss_pred hhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEeccc
Q 014100 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE 392 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 392 (430)
.+ +.-+.....+++|++|++.+ ++++.++.. .+..++.|++|++.+...-..-|..+.++ .|+++.+..
T Consensus 380 ~I----EDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 380 CI----EDAAVAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EE----ecchhhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 33 11112233488888899887 478877652 23458889999987765444444455555 788887733
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-17 Score=158.01 Aligned_cols=274 Identities=22% Similarity=0.269 Sum_probs=175.3
Q ss_pred hhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 42 KCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 42 ~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
.+|..+..+..|..|+++++. +.+++.+. ..-+++-.|+++++ ++.+ +|..++-++..|-.||+++| .+..+
T Consensus 94 GiP~diF~l~dLt~lDLShNq-L~EvP~~L----E~AKn~iVLNLS~N-~Iet-IPn~lfinLtDLLfLDLS~N-rLe~L 165 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQ-LREVPTNL----EYAKNSIVLNLSYN-NIET-IPNSLFINLTDLLFLDLSNN-RLEML 165 (1255)
T ss_pred CCCchhcccccceeeecchhh-hhhcchhh----hhhcCcEEEEcccC-cccc-CCchHHHhhHhHhhhccccc-hhhhc
Confidence 477778888888888888665 66666555 56677777888775 4444 45555667778888888876 56655
Q ss_pred eccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcc-ccc-----CCcceEEEecCC
Q 014100 122 LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME-TFI-----SNSVVHVTTDNK 195 (430)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~-----~~~L~~L~l~~~ 195 (430)
|..+ ..+..|++|.+++++-. .+ ....+..+.+|++|.+++...-- .+| ..+|..++++.|
T Consensus 166 ---------PPQ~-RRL~~LqtL~Ls~NPL~-hf--QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 166 ---------PPQI-RRLSMLQTLKLSNNPLN-HF--QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred ---------CHHH-HHHhhhhhhhcCCChhh-HH--HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 5555 77888888888886632 22 11115566677788887765433 333 235777777777
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCC
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 275 (430)
++..++ .-+-.+++|+.|.|++ +.++.+.-. . ..-.+|++|+++. +.++.+|..+..++
T Consensus 233 ~Lp~vP---------------ecly~l~~LrrLNLS~-N~iteL~~~-~---~~W~~lEtLNlSr-NQLt~LP~avcKL~ 291 (1255)
T KOG0444|consen 233 NLPIVP---------------ECLYKLRNLRRLNLSG-NKITELNMT-E---GEWENLETLNLSR-NQLTVLPDAVCKLT 291 (1255)
T ss_pred CCCcch---------------HHHhhhhhhheeccCc-Cceeeeecc-H---HHHhhhhhhcccc-chhccchHHHhhhH
Confidence 765544 1233467788888877 466665322 1 4446777777777 46777777777777
Q ss_pred CCCEEEEccCCCcc--ccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCC
Q 014100 276 NLATLEVSKCHGLI--NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN 353 (430)
Q Consensus 276 ~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 353 (430)
+|+.|.+... .++ -+|+ .++.+.+|+.+...+. .++- ++++..-+++|+.|.+. |+.+..+|...
T Consensus 292 kL~kLy~n~N-kL~FeGiPS--GIGKL~~Levf~aanN-~LEl--------VPEglcRC~kL~kL~L~-~NrLiTLPeaI 358 (1255)
T KOG0444|consen 292 KLTKLYANNN-KLTFEGIPS--GIGKLIQLEVFHAANN-KLEL--------VPEGLCRCVKLQKLKLD-HNRLITLPEAI 358 (1255)
T ss_pred HHHHHHhccC-cccccCCcc--chhhhhhhHHHHhhcc-cccc--------CchhhhhhHHHHHhccc-ccceeechhhh
Confidence 7777776543 333 3343 4666777777766553 3322 23344456777777775 35666777655
Q ss_pred cccCCCCccEEEeccCCCC
Q 014100 354 YALEFPSLEHVVVRQCPTM 372 (430)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l 372 (430)
+. ++.|+.|+++..+++
T Consensus 359 Hl--L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 359 HL--LPDLKVLDLRENPNL 375 (1255)
T ss_pred hh--cCCcceeeccCCcCc
Confidence 55 677777777777766
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-16 Score=150.63 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=177.8
Q ss_pred hhhhhhhhcccCC-CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 38 STIQKCYEEMIGF-RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
|.+.+++..-.+- .++++|+++++. +..+-.+. ...+.+|..|.++++ .++.+++. .++.+++|+.|++..|
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~---F~~lnsL~tlkLsrN-rittLp~r-~Fk~L~~L~~LdLnrN- 231 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGH---FDSLNSLLTLKLSRN-RITTLPQR-SFKRLPKLESLDLNRN- 231 (873)
T ss_pred chhhcccCCCCCCCCCceEEeecccc-cccccccc---ccccchheeeecccC-cccccCHH-Hhhhcchhhhhhcccc-
Confidence 4445554443332 456666666544 44332222 134456666666664 44554433 3666777777777665
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccc------ccCCcceEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET------FISNSVVHV 190 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~------~~~~~L~~L 190 (430)
.++.+ ....+..+++|+.|.+.++ ++..+-.+. .-.+.++++|+++.+. ++. +..++|+.|
T Consensus 232 ~iriv---------e~ltFqgL~Sl~nlklqrN-~I~kL~DG~--Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 232 RIRIV---------EGLTFQGLPSLQNLKLQRN-DISKLDDGA--FYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred ceeee---------hhhhhcCchhhhhhhhhhc-CcccccCcc--eeeecccceeecccch-hhhhhcccccccchhhhh
Confidence 44333 2223466777777777653 344332222 3457778888887654 222 225678888
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT- 269 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~- 269 (430)
+++.|.+..+- .+....+++|+.|+|+. +.++.+.++.+ ..+..|+.|.+++. .++.+.+
T Consensus 299 ~lS~NaI~rih--------------~d~WsftqkL~~LdLs~-N~i~~l~~~sf---~~L~~Le~LnLs~N-si~~l~e~ 359 (873)
T KOG4194|consen 299 DLSYNAIQRIH--------------IDSWSFTQKLKELDLSS-NRITRLDEGSF---RVLSQLEELNLSHN-SIDHLAEG 359 (873)
T ss_pred ccchhhhheee--------------cchhhhcccceeEeccc-cccccCChhHH---HHHHHhhhhccccc-chHHHHhh
Confidence 88888765433 12345678999999998 69999988888 88999999999984 5665543
Q ss_pred CcccCCCCCEEEEccCCC---ccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCC
Q 014100 270 PSWHLENLATLEVSKCHG---LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL 346 (430)
Q Consensus 270 ~~~~l~~L~~L~l~~c~~---l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 346 (430)
.+..+.+|++|+++...- +++... .+.++++|+.|.+.+ ++++.|... ....++.|++|++.+.+ +
T Consensus 360 af~~lssL~~LdLr~N~ls~~IEDaa~--~f~gl~~LrkL~l~g-Nqlk~I~kr-------Afsgl~~LE~LdL~~Na-i 428 (873)
T KOG4194|consen 360 AFVGLSSLHKLDLRSNELSWCIEDAAV--AFNGLPSLRKLRLTG-NQLKSIPKR-------AFSGLEALEHLDLGDNA-I 428 (873)
T ss_pred HHHHhhhhhhhcCcCCeEEEEEecchh--hhccchhhhheeecC-ceeeecchh-------hhccCcccceecCCCCc-c
Confidence 345778999999987431 233211 245699999999987 577777532 22338889999998754 5
Q ss_pred ceecCCCcccCCCCccEEEec------cCCCCccccCCC
Q 014100 347 TSFCLGNYALEFPSLEHVVVR------QCPTMKIFSQGV 379 (430)
Q Consensus 347 ~~~~~~~~~~~~~~L~~L~l~------~c~~l~~l~~~~ 379 (430)
.++-... +.++ .|++|.+. +| ++..++.|+
T Consensus 429 aSIq~nA-Fe~m-~Lk~Lv~nSssflCDC-ql~Wl~qWl 464 (873)
T KOG4194|consen 429 ASIQPNA-FEPM-ELKELVMNSSSFLCDC-QLKWLAQWL 464 (873)
T ss_pred eeecccc-cccc-hhhhhhhcccceEEec-cHHHHHHHH
Confidence 5554422 2223 78888764 34 455666664
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-16 Score=146.38 Aligned_cols=288 Identities=16% Similarity=0.184 Sum_probs=189.4
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
..||.|++++|........-.+...+||+++|.+.+|.++++..- .++...+++|+.|++..|..|++....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~--------~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL--------LSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH--------HHHHHhcchhhhhhhcccchhHHHHHH
Confidence 357888888886655544444577788888888888876654311 122456788888888888877766432
Q ss_pred cccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecc
Q 014100 159 TENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 231 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 231 (430)
.. ...+++|++++++.|+.++... +..++.+...||.-.+.- .+....+..+-+.++++.
T Consensus 210 ~l-a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le------------~l~~~~~~~~~i~~lnl~ 276 (483)
T KOG4341|consen 210 YL-AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE------------ALLKAAAYCLEILKLNLQ 276 (483)
T ss_pred HH-HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH------------HHHHHhccChHhhccchh
Confidence 22 4568888888888888766532 223555555555432211 011123456677788888
Q ss_pred cCCCceeecccCchhhhhcccccEEeeccCccccccc--CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEc
Q 014100 232 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 309 (430)
.|..+++.. .+.+...+..|+.|..++|...++.+ .-..+.++|+.+.+.+|..+.+........+++.|+.+++.
T Consensus 277 ~c~~lTD~~--~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 277 HCNQLTDED--LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhccccchH--HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 887777643 22233667889999999988876433 22336788999999999888877655566788899999998
Q ss_pred ccccchhhhcccccccCCcceeecccceeecccCCCCceecC---CCcccCCCCccEEEeccCCCCcccc-CCCcCCCCc
Q 014100 310 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKL 385 (430)
Q Consensus 310 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L 385 (430)
+|....+-. .......++.|+.|.+++|..+++-.. +........|+.+++++|+.++.-. .....+++|
T Consensus 355 ~~~~~~d~t------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L 428 (483)
T KOG4341|consen 355 ECGLITDGT------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL 428 (483)
T ss_pred ccceehhhh------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence 887665531 111234488899999998877766511 1122236678899999998887533 234567889
Q ss_pred eEEecccCCC
Q 014100 386 NKVKPTEEED 395 (430)
Q Consensus 386 ~~l~l~~~~~ 395 (430)
+.|++.+|+.
T Consensus 429 eri~l~~~q~ 438 (483)
T KOG4341|consen 429 ERIELIDCQD 438 (483)
T ss_pred ceeeeechhh
Confidence 9988877664
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-15 Score=141.04 Aligned_cols=313 Identities=18% Similarity=0.171 Sum_probs=212.6
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
..|+.|.+.+|..+.+-.... ....+|+++.|.+++|.++++..-.++.+.|++|+.|++..|..++...- .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L----k-- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL----K-- 209 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH----H--
Confidence 468999999998666433222 22578999999999998888766666788899999999999988765511 1
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCCCCcccCC
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~~ 203 (430)
.+...+++|++|+++.|+.++.-..... ..++..++++...+|.....-. ..-+.++++..|+....
T Consensus 210 --~la~gC~kL~~lNlSwc~qi~~~gv~~~-~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD--- 283 (483)
T KOG4341|consen 210 --YLAEGCRKLKYLNLSWCPQISGNGVQAL-QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD--- 283 (483)
T ss_pred --HHHHhhhhHHHhhhccCchhhcCcchHH-hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc---
Confidence 1236789999999999987765210100 2345567777777776554322 22344555556653221
Q ss_pred CcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccc--cCCcccCCCCCEEE
Q 014100 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL--VTPSWHLENLATLE 281 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~ 281 (430)
..++.-...+..|+.|+.++|.++++.....+. ..+.+|+.+.+.+|..+++. .....+.+.|+.++
T Consensus 284 ---------~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 284 ---------EDLWLIACGCHALQVLCYSSCTDITDEVLWALG--QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred ---------hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 112222345778999999999887776544442 66799999999999887743 22234778999999
Q ss_pred EccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCc
Q 014100 282 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSL 361 (430)
Q Consensus 282 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L 361 (430)
+.+|....+........+++.|+.|.+++|..+++.-.. ...........|+.+++.+||.+++-..+ ....++.|
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~---~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~L 428 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR---HLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNL 428 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh---hhhhccccccccceeeecCCCCchHHHHH-HHhhCccc
Confidence 999987766533345678999999999999888775111 01112234677999999999998775432 33458999
Q ss_pred cEEEeccCCCCccccCC--CcCCCCceEEeccc
Q 014100 362 EHVVVRQCPTMKIFSQG--VVDAPKLNKVKPTE 392 (430)
Q Consensus 362 ~~L~l~~c~~l~~l~~~--~~~~~~L~~l~l~~ 392 (430)
|++++.+|..++.-+.. ..++|+.+...+.+
T Consensus 429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 99999999887654332 34567777666533
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=131.18 Aligned_cols=254 Identities=18% Similarity=0.128 Sum_probs=145.4
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
.+-..|+++++. +..++... .++|+.|++.++ +++.++. ..++|++|++++| .+..+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l------~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsL--------- 257 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSL--------- 257 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcch------hcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcc---------
Confidence 446677877764 55544322 347888888876 5666433 2578888888887 66655
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccCCCccee
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|. ..++|+.|++.++ .+..++. .+.+|+.|++.+|. ++.+| +++|+.|++++|.+.+++.
T Consensus 258 P~----lp~sL~~L~Ls~N-~L~~Lp~------lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~------ 319 (788)
T PRK15387 258 PV----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPA------ 319 (788)
T ss_pred cC----cccccceeeccCC-chhhhhh------chhhcCEEECcCCc-cccccccccccceeECCCCccccCCC------
Confidence 22 2367788888775 3555532 23567778887764 55565 4678888888877665431
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCc
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 288 (430)
..++|+.|+++++ .++.++. ...+|+.|+++++ .+..+|.. .++|+.|+++++ .+
T Consensus 320 ------------lp~~L~~L~Ls~N-~L~~LP~-------lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L 374 (788)
T PRK15387 320 ------------LPSELCKLWAYNN-QLTSLPT-------LPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RL 374 (788)
T ss_pred ------------CcccccccccccC-ccccccc-------cccccceEecCCC-ccCCCCCC---Ccccceehhhcc-cc
Confidence 1235666666653 4544431 1235667777663 45555432 235566666543 34
Q ss_pred cccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 014100 289 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 289 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
..+|. ...+|+.|+++++ .+..+.. .+++|+.|+++++ .++.++.. ..+|+.|++++
T Consensus 375 ~~LP~-----l~~~L~~LdLs~N-~Lt~LP~-----------l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~ 431 (788)
T PRK15387 375 TSLPA-----LPSGLKELIVSGN-RLTSLPV-----------LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR 431 (788)
T ss_pred ccCcc-----cccccceEEecCC-cccCCCC-----------cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc
Confidence 44442 1245666666654 2333210 1345666666664 35555421 24566666655
Q ss_pred CCCCccccCCCcCCCCceEEecccCC
Q 014100 369 CPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 369 c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+ +++.+|..+..+++|+.+++++++
T Consensus 432 N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 N-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cccccChHHhhccCCCeEECCCCC
Confidence 3 455666666666667777766654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-14 Score=134.34 Aligned_cols=331 Identities=15% Similarity=0.139 Sum_probs=187.3
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|++++.+.+|+.|++..+. +..++ ....+..|+.+++..+ ..+..|.....++++|.+||+.+| +
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lP-----ef~gcs~L~Elh~g~N--~i~~lpae~~~~L~~l~vLDLRdN-k 263 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNK-IRFLP-----EFPGCSLLKELHVGEN--QIEMLPAEHLKHLNSLLVLDLRDN-K 263 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcc-cccCC-----CCCccHHHHHHHhccc--HHHhhHHHHhcccccceeeecccc-c
Confidence 5566777888888888888877665 44333 1246777888887763 344456666778888888888887 6
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CC---cceE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SN---SVVH 189 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~---~L~~ 189 (430)
++++ |.++ ..+.+|++|+++++ .++..|.. .+++ .|+.|.+.+++ ++.+- .. -|++
T Consensus 264 lke~---------Pde~-clLrsL~rLDlSNN-~is~Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 264 LKEV---------PDEI-CLLRSLERLDLSNN-DISSLPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY 327 (565)
T ss_pred cccC---------chHH-HHhhhhhhhcccCC-ccccCCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence 7777 6665 66777888888864 57777666 6677 77888777766 22111 10 1222
Q ss_pred EEe--cCCCCCcccCCCcceeccC-ccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeecc------
Q 014100 190 VTT--DNKEPEKLTSEENFFLTDQ-IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE------ 260 (430)
Q Consensus 190 L~l--~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~------ 260 (430)
|+= .+.++......+.-. .+ -...|...-...+.+.|++++ .+++.++.+.+.+. .-.-....+++.
T Consensus 328 Lrs~~~~dglS~se~~~e~~--~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~-~~~~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETA--MTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA-KSEIVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHhhccCCCCCCccccccc--CCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHh-hhcceEEEecccchHhhh
Confidence 211 000000000000000 00 011122222234566666666 35666655544321 111233333333
Q ss_pred -----------------CcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccccc
Q 014100 261 -----------------CSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVG 323 (430)
Q Consensus 261 -----------------c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 323 (430)
...++.+|..+..+++|..|++++ +-+.++|.. .+.+..|+.|+++.. ....++
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e--~~~lv~Lq~LnlS~N-rFr~lP----- 474 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEE--MGSLVRLQTLNLSFN-RFRMLP----- 474 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchh--hhhhhhhheeccccc-ccccch-----
Confidence 233334444556777888888865 346677764 456777888888764 222211
Q ss_pred ccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCCCCCccccc
Q 014100 324 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWE 403 (430)
Q Consensus 324 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 403 (430)
.-..-+-.++.+- ..-..+..++.. +...+.+|.+|++.+ ..+..+|...+++.+|++++++|++.....-..-
T Consensus 475 ---~~~y~lq~lEtll-as~nqi~~vd~~-~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 475 ---ECLYELQTLETLL-ASNNQIGSVDPS-GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred ---HHHhhHHHHHHHH-hccccccccChH-HhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccCCCHHHHh
Confidence 1100011222222 233456666653 344578899999965 5677899999999999999999988765555554
Q ss_pred CchHHHHHH
Q 014100 404 GNLNDTIKK 412 (430)
Q Consensus 404 ~~~~~~i~~ 412 (430)
+....+|-+
T Consensus 549 mkgT~aiL~ 557 (565)
T KOG0472|consen 549 MKGTAAILS 557 (565)
T ss_pred ccChHHHHH
Confidence 444444433
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.7e-14 Score=140.37 Aligned_cols=214 Identities=14% Similarity=0.137 Sum_probs=130.1
Q ss_pred CCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccC-------CCcceec------------------------
Q 014100 164 EMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTS-------EENFFLT------------------------ 209 (430)
Q Consensus 164 ~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~-------~~~l~~~------------------------ 209 (430)
.-++|+.|....|+-.+..+ +.++++++++.+.+...++ ++.+...
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 34566666666666544333 4577788777766443331 1111110
Q ss_pred cCccccCCcCCCCCCCcEEecccCCCceeecccCchhh----------------------hhcccccEEeeccCcccccc
Q 014100 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN----------------------KAFANLIRLKISECSKLQKL 267 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~----------------------~~l~~L~~L~l~~c~~l~~l 267 (430)
++..-+......+.+|++|+|.. +++.+++...+... ...+.|+.|.+.+...-...
T Consensus 297 nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 02233333445577888888877 46666554322111 22344455555554333344
Q ss_pred cCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCc
Q 014100 268 VTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT 347 (430)
Q Consensus 268 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 347 (430)
.+.+.++.+|+.|+++.. .+..+|.. ...++..|++|++++ ++++.+. +....+++|+.|..-+ +.+.
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~fpas-~~~kle~LeeL~LSG-NkL~~Lp--------~tva~~~~L~tL~ahs-N~l~ 443 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNSFPAS-KLRKLEELEELNLSG-NKLTTLP--------DTVANLGRLHTLRAHS-NQLL 443 (1081)
T ss_pred hhhhccccceeeeeeccc-ccccCCHH-HHhchHHhHHHhccc-chhhhhh--------HHHHhhhhhHHHhhcC-Ccee
Confidence 566778889999999874 46767654 357789999999988 4677765 1333477788777654 4577
Q ss_pred eecCCCcccCCCCccEEEeccCCCCccccCCCc-CCCCceEEecccCC
Q 014100 348 SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV-DAPKLNKVKPTEEE 394 (430)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~l~l~~~~ 394 (430)
.+|. ...++.|+.++++ |.++..+-.... ..|+|++++++|+.
T Consensus 444 ~fPe---~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFPE---LAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred echh---hhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 7772 2348999999995 667765433322 23899999999986
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-12 Score=130.14 Aligned_cols=245 Identities=17% Similarity=0.122 Sum_probs=169.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|..+. ++|+.|.+.++. ++.++ ...++|++|+++++ +++.+++. .++|+.|++++| .
T Consensus 211 ~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP-------~lp~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N-~ 273 (788)
T PRK15387 211 SGLTTLPDCLP--AHITTLVIPDNN-LTSLP-------ALPPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSN-P 273 (788)
T ss_pred CCCCcCCcchh--cCCCEEEccCCc-CCCCC-------CCCCCCcEEEecCC-ccCcccCc-----ccccceeeccCC-c
Confidence 45667777664 489999999765 66533 23589999999987 67765432 468999999988 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNK 195 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~ 195 (430)
+..+ |. .+++|+.|++.++ .++.+|. ..++|+.|+++++. ++.+| +.+|+.|++++|
T Consensus 274 L~~L---------p~----lp~~L~~L~Ls~N-~Lt~LP~------~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N 332 (788)
T PRK15387 274 LTHL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNN 332 (788)
T ss_pred hhhh---------hh----chhhcCEEECcCC-ccccccc------cccccceeECCCCc-cccCCCCcccccccccccC
Confidence 5555 22 2357888999885 5666643 24789999999874 66665 557888999888
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCC
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~ 275 (430)
.+.+++ ...++|+.|++++ ++++.++. ...+|+.|+++++ .+..+|.. ..
T Consensus 333 ~L~~LP------------------~lp~~Lq~LdLS~-N~Ls~LP~-------lp~~L~~L~Ls~N-~L~~LP~l---~~ 382 (788)
T PRK15387 333 QLTSLP------------------TLPSGLQELSVSD-NQLASLPT-------LPSELYKLWAYNN-RLTSLPAL---PS 382 (788)
T ss_pred cccccc------------------ccccccceEecCC-CccCCCCC-------CCcccceehhhcc-ccccCccc---cc
Confidence 876644 1235789999987 57777642 2357888888774 56666643 35
Q ss_pred CCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcc
Q 014100 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA 355 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 355 (430)
+|+.|+++++ .+..+|. ..++|+.|+++++. +..+.. .+.+|+.|++.++ .++.++.. .
T Consensus 383 ~L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~s--l 441 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPES--L 441 (788)
T ss_pred ccceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccChH--H
Confidence 7889999875 4665553 23678999998863 444421 1456788888774 67777753 3
Q ss_pred cCCCCccEEEeccCCC
Q 014100 356 LEFPSLEHVVVRQCPT 371 (430)
Q Consensus 356 ~~~~~L~~L~l~~c~~ 371 (430)
..+++|++|++++++.
T Consensus 442 ~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 442 IHLSSETTVNLEGNPL 457 (788)
T ss_pred hhccCCCeEECCCCCC
Confidence 4578899999988754
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-14 Score=133.07 Aligned_cols=157 Identities=17% Similarity=0.131 Sum_probs=123.4
Q ss_pred cCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccccccc
Q 014100 218 EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 218 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 297 (430)
+.+.+.++..+++.+ ++++..++..+ .++.|+.|+... +.++.+|+.++.+.+|..|++.+ +.+..+|. +
T Consensus 155 ~~~~~~~l~~l~~~~-n~l~~l~~~~i----~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe---f 224 (565)
T KOG0472|consen 155 DMVNLSKLSKLDLEG-NKLKALPENHI----AMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPE---F 224 (565)
T ss_pred HHHHHHHHHHhhccc-cchhhCCHHHH----HHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCC---C
Confidence 455667888888877 57777766543 488999999866 57889999999999999999977 46777775 6
Q ss_pred ccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccC
Q 014100 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 377 (430)
++|..|++|+++. +.++-+.. +....++++..|++.. ++++++|.+.+. +.+|++|++++ ..+..+|.
T Consensus 225 ~gcs~L~Elh~g~-N~i~~lpa-------e~~~~L~~l~vLDLRd-Nklke~Pde~cl--LrsL~rLDlSN-N~is~Lp~ 292 (565)
T KOG0472|consen 225 PGCSLLKELHVGE-NQIEMLPA-------EHLKHLNSLLVLDLRD-NKLKEVPDEICL--LRSLERLDLSN-NDISSLPY 292 (565)
T ss_pred CccHHHHHHHhcc-cHHHhhHH-------HHhcccccceeeeccc-cccccCchHHHH--hhhhhhhcccC-CccccCCc
Confidence 7899999999976 45554432 1344589999999998 589999987655 88999999987 47889999
Q ss_pred CCcCCCCceEEecccCCCCC
Q 014100 378 GVVDAPKLNKVKPTEEEDGD 397 (430)
Q Consensus 378 ~~~~~~~L~~l~l~~~~~~~ 397 (430)
..+++ .|+.+.+.|++...
T Consensus 293 sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ccccc-eeeehhhcCCchHH
Confidence 99888 89999998877543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.3e-11 Score=122.66 Aligned_cols=175 Identities=14% Similarity=0.153 Sum_probs=78.9
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
+|+.|+++++ ++..++. .+ ..+|++|++++| .+..+ |..+ .++|+.|+++++ .+..+|..
T Consensus 200 ~L~~L~Ls~N-~LtsLP~-~l---~~nL~~L~Ls~N-~LtsL---------P~~l---~~~L~~L~Ls~N-~L~~LP~~- 259 (754)
T PRK15370 200 QITTLILDNN-ELKSLPE-NL---QGNIKTLYANSN-QLTSI---------PATL---PDTIQEMELSIN-RITELPER- 259 (754)
T ss_pred CCcEEEecCC-CCCcCCh-hh---ccCCCEEECCCC-ccccC---------Chhh---hccccEEECcCC-ccCcCChh-
Confidence 4556666554 4444322 21 235666666655 34433 2221 234555555554 23344322
Q ss_pred ccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 160 ENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
+ ..+|+.|+++++ .++.+| +.+|+.|++++|.+..++ ....++|+.|++++ +.+
T Consensus 260 --l--~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP-----------------~~lp~sL~~L~Ls~-N~L 316 (754)
T PRK15370 260 --L--PSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLP-----------------AHLPSGITHLNVQS-NSL 316 (754)
T ss_pred --H--hCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCc-----------------ccchhhHHHHHhcC-Ccc
Confidence 1 135556665533 344443 335666666665544432 01123455555555 244
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
+.++. ...++|+.|.+.+| .++.+|..+ .++|+.|++++|. +..+|.. + .++|+.|++++|
T Consensus 317 t~LP~------~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~--l--p~~L~~LdLs~N 377 (754)
T PRK15370 317 TALPE------TLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQ-ITVLPET--L--PPTITTLDVSRN 377 (754)
T ss_pred ccCCc------cccccceeccccCC-ccccCChhh--cCcccEEECCCCC-CCcCChh--h--cCCcCEEECCCC
Confidence 44321 11245555555554 234444322 2456666665542 3333321 1 245666666554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=120.92 Aligned_cols=243 Identities=13% Similarity=0.108 Sum_probs=170.8
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+...|++++. .++.+|. . + .++|+.|++++| .+..+ |..+ +++|+.|+++++ .++.+|..
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-~-I--p~~L~~L~Ls~N-~LtsL---------P~~l---~~nL~~L~Ls~N-~LtsLP~~ 238 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-C-I--PEQITTLILDNN-ELKSL---------PENL---QGNIKTLYANSN-QLTSIPAT 238 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-c-c--ccCCcEEEecCC-CCCcC---------Chhh---ccCCCEEECCCC-ccccCChh
Confidence 46778999886 5676543 2 2 357999999988 67666 4433 368999999986 57777543
Q ss_pred cccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCC
Q 014100 159 TENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 235 (430)
+ .+.|+.|++++|. ++.+| +.+|+.|++++|.+..++ . ..+++|+.|+++++ +
T Consensus 239 ---l--~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~L~~LP---------------~--~l~~sL~~L~Ls~N-~ 294 (754)
T PRK15370 239 ---L--PDTIQEMELSINR-ITELPERLPSALQSLDLFHNKISCLP---------------E--NLPEELRYLSVYDN-S 294 (754)
T ss_pred ---h--hccccEEECcCCc-cCcCChhHhCCCCEEECcCCccCccc---------------c--ccCCCCcEEECCCC-c
Confidence 2 3579999999886 55666 568999999998877654 1 22358999999985 7
Q ss_pred ceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccch
Q 014100 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIE 315 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 315 (430)
++.++.. ..++|+.|+++++ .+..+|..+ .++|+.|++++|. ++.+|.. -.++|+.|++++|. +.
T Consensus 295 Lt~LP~~------lp~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-Lt~LP~~----l~~sL~~L~Ls~N~-L~ 359 (754)
T PRK15370 295 IRTLPAH------LPSGITHLNVQSN-SLTALPETL--PPGLKTLEAGENA-LTSLPAS----LPPELQVLDVSKNQ-IT 359 (754)
T ss_pred cccCccc------chhhHHHHHhcCC-ccccCCccc--cccceeccccCCc-cccCChh----hcCcccEEECCCCC-CC
Confidence 7776432 2257899999885 566666533 3689999998874 6666531 23799999999874 44
Q ss_pred hhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCC----cCCCCceEEecc
Q 014100 316 QIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV----VDAPKLNKVKPT 391 (430)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~----~~~~~L~~l~l~ 391 (430)
.+. . ...++|+.|++.+| .++.++... .+.|+.|+++++ +++.+|..+ ...+++..+.+.
T Consensus 360 ~LP--------~--~lp~~L~~LdLs~N-~Lt~LP~~l----~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 360 VLP--------E--TLPPTITTLDVSRN-ALTNLPENL----PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred cCC--------h--hhcCCcCEEECCCC-cCCCCCHhH----HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEee
Confidence 332 1 11468999999987 577776532 357999999886 566777654 234788899997
Q ss_pred cCCC
Q 014100 392 EEED 395 (430)
Q Consensus 392 ~~~~ 395 (430)
+++.
T Consensus 424 ~Npl 427 (754)
T PRK15370 424 YNPF 427 (754)
T ss_pred CCCc
Confidence 7653
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-10 Score=123.20 Aligned_cols=297 Identities=20% Similarity=0.275 Sum_probs=170.7
Q ss_pred cchhhhhhhhcccCCCCcceeecccccc-ceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEec
Q 014100 36 LNSTIQKCYEEMIGFRDIKYLQLGHFPR-LQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 36 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 114 (430)
.++.+..++... .+++|+.|-+.+... +..+..+ ....+|.|+.||+++|..+..+|.. ++.+-+|++|++++
T Consensus 531 ~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~---ff~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~ 604 (889)
T KOG4658|consen 531 MNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGE---FFRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSD 604 (889)
T ss_pred eccchhhccCCC-CCCccceEEEeecchhhhhcCHH---HHhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccC
Confidence 334555554443 334677777776542 2221111 1245778888888887776665433 67788888888877
Q ss_pred CCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC-Cccccc------CCcc
Q 014100 115 CDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFI------SNSV 187 (430)
Q Consensus 115 c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~~------~~~L 187 (430)
. .+..+ |.++ ++|.+|.+|++..+..+..++.. ...+++|++|.+..-. ..+..- ..+|
T Consensus 605 t-~I~~L---------P~~l-~~Lk~L~~Lnl~~~~~l~~~~~i---~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 605 T-GISHL---------PSGL-GNLKKLIYLNLEVTGRLESIPGI---LLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred C-Ccccc---------chHH-HHHHhhheeccccccccccccch---hhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 5 55555 6666 77778888888776655554322 4457788888776543 000000 2233
Q ss_pred eEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCc----EEecccCCCceeecccCchhhhhcccccEEeeccCcc
Q 014100 188 VHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR----YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 188 ~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
+.+.++..+. . +.......++|. .+.+.++.. ... ...+ ..+.+|+.|.+.+|..
T Consensus 671 ~~ls~~~~s~-~---------------~~e~l~~~~~L~~~~~~l~~~~~~~-~~~-~~~~---~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 671 ENLSITISSV-L---------------LLEDLLGMTRLRSLLQSLSIEGCSK-RTL-ISSL---GSLGNLEELSILDCGI 729 (889)
T ss_pred hhheeecchh-H---------------hHhhhhhhHHHHHHhHhhhhccccc-cee-eccc---ccccCcceEEEEcCCC
Confidence 3333322221 0 001111222222 233322221 221 2223 7778899999998876
Q ss_pred cccccCC-----ccc-CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccc--ccccCCcceeeccc
Q 014100 264 LQKLVTP-----SWH-LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ--VGEEAKGCVVFEEL 335 (430)
Q Consensus 264 l~~l~~~-----~~~-l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~~~~~~~~~L 335 (430)
.+..... ... ++++..+.+.+|...+++.+ ....++|+.|++..|..+++++... ..........+.++
T Consensus 730 ~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~ 806 (889)
T KOG4658|consen 730 SEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKL 806 (889)
T ss_pred chhhcccccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccc
Confidence 5422111 112 55777888888888877764 3456899999999999998887443 01111123446677
Q ss_pred ceee-cccCCCCceecCCCcccCCCCccEEEeccCCCCccccCC
Q 014100 336 GYLG-LDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 336 ~~L~-l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 378 (430)
+.+. +.+.+.+..+.... ..++.|+.+.+..||+++.+|..
T Consensus 807 ~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 807 EGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred ccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 7773 66666666665422 33677999999999999888765
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-11 Score=123.44 Aligned_cols=231 Identities=21% Similarity=0.292 Sum_probs=139.8
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+|++++++.. ++..+ | .++..+++|+.+++.+| .+..+ |..+ ....+|+.|.+..| .+..+|..
T Consensus 241 ~nl~~~dis~n-~l~~l-p-~wi~~~~nle~l~~n~N-~l~~l---------p~ri-~~~~~L~~l~~~~n-el~yip~~ 305 (1081)
T KOG0618|consen 241 LNLQYLDISHN-NLSNL-P-EWIGACANLEALNANHN-RLVAL---------PLRI-SRITSLVSLSAAYN-ELEYIPPF 305 (1081)
T ss_pred ccceeeecchh-hhhcc-h-HHHHhcccceEecccch-hHHhh---------HHHH-hhhhhHHHHHhhhh-hhhhCCCc
Confidence 47778888775 45554 4 55778888888888876 44444 3333 44556666666654 45555443
Q ss_pred cccccCCCCccEEEEecCCCcccccCC-------cceEEEecCCCCCcccCCC--------cceecc-C-ccccCCcCCC
Q 014100 159 TENIIEMPELRYLAIENCPDMETFISN-------SVVHVTTDNKEPEKLTSEE--------NFFLTD-Q-IQPLFDEKVA 221 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~~~-------~L~~L~l~~~~~~~~~~~~--------~l~~~~-~-~~~~~~~~~~ 221 (430)
...+..|++|++..+. +..+|.. ++..|..+.+.+...+... .|...+ . ....|..+-+
T Consensus 306 ---le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 306 ---LEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred ---ccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 4456667777776543 4444421 2333333333322222110 111111 1 1233444566
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~ 301 (430)
+++|+.|.|++ +.+..++...+ .++..|+.|.+++ ++++.+|..+..+..|++|...+ +.+..+|. ...++
T Consensus 382 ~~hLKVLhLsy-NrL~~fpas~~---~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe---~~~l~ 452 (1081)
T KOG0618|consen 382 FKHLKVLHLSY-NRLNSFPASKL---RKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPE---LAQLP 452 (1081)
T ss_pred ccceeeeeecc-cccccCCHHHH---hchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeechh---hhhcC
Confidence 77888888887 57887777666 7888888888888 47888887777778888876644 34566663 56788
Q ss_pred CccEEEEcccccchhhhcccccccCCcceeecccceeecccCCC
Q 014100 302 NLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 302 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
.|+.+|++ |+.+..+.... ....++|++|++++.+.
T Consensus 453 qL~~lDlS-~N~L~~~~l~~-------~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 453 QLKVLDLS-CNNLSEVTLPE-------ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cceEEecc-cchhhhhhhhh-------hCCCcccceeeccCCcc
Confidence 88888884 46666654221 01127888888888765
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-09 Score=111.56 Aligned_cols=284 Identities=18% Similarity=0.249 Sum_probs=169.6
Q ss_pred hhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 40 IQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 40 ~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
+..++.+ +..++.|+.|++++|..+.+++... +.+-+||+|+++++ .+..+ |.+ +++++.|.+|++..+..+
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I----~~Li~LryL~L~~t-~I~~L-P~~-l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI----GELVHLRYLDLSDT-GISHL-PSG-LGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHH----hhhhhhhcccccCC-Ccccc-chH-HHHHHhhheecccccccc
Confidence 5566544 5679999999999998888877776 78999999999987 56665 444 889999999999988766
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccc-cccccccCcccccCCCCccEEEEecCCCc--ccc-cCCc----ceEE
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLP-KLKRFCNFTENIIEMPELRYLAIENCPDM--ETF-ISNS----VVHV 190 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l--~~~-~~~~----L~~L 190 (430)
..+ .++...+++|++|.+..-. ..+.. ....+..+.+|+.+.+..+... ..+ .... .+.+
T Consensus 632 ~~~----------~~i~~~L~~Lr~L~l~~s~~~~~~~--~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 632 ESI----------PGILLELQSLRVLRLPRSALSNDKL--LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred ccc----------cchhhhcccccEEEeeccccccchh--hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhh
Confidence 554 2333568999999986522 11111 1111455667777777554430 111 1112 2233
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceee--cccCchhhhh-cccccEEeeccCcccccc
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL--WKENDESNKA-FANLIRLKISECSKLQKL 267 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~--~~~~~~~~~~-l~~L~~L~l~~c~~l~~l 267 (430)
.+.++.... .....+.+++|+.|.+.+|...+.. +...... .. ++++..+.+.+|.....+
T Consensus 700 ~~~~~~~~~---------------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~-~~~f~~l~~~~~~~~~~~r~l 763 (889)
T KOG4658|consen 700 SIEGCSKRT---------------LISSLGSLGNLEELSILDCGISEIVIEWEESLIV-LLCFPNLSKVSILNCHMLRDL 763 (889)
T ss_pred hhcccccce---------------eecccccccCcceEEEEcCCCchhhcccccccch-hhhHHHHHHHHhhcccccccc
Confidence 332322221 1134677889999999998553221 1111100 22 557777777777766654
Q ss_pred cCCcccCCCCCEEEEccCCCcccccccccccccc----------CccEE-EEcccccchhhhcccccccCCcceeecccc
Q 014100 268 VTPSWHLENLATLEVSKCHGLINVLTLSTSESLV----------NLGRM-KIADCKMIEQIIQLQVGEEAKGCVVFEELG 336 (430)
Q Consensus 268 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~----------~L~~L-~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 336 (430)
......++|+.|.+..|..+.++... ...+. .++.+ .+.+...+.++. .....++.|+
T Consensus 764 -~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~--------~~~l~~~~l~ 832 (889)
T KOG4658|consen 764 -TWLLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELILPFNKLEGLRMLCSLGGLPQLY--------WLPLSFLKLE 832 (889)
T ss_pred -chhhccCcccEEEEecccccccCCCH--HHHhhhcccEEecccccccceeeecCCCCceeE--------ecccCccchh
Confidence 23346689999999999888876432 22223 33333 232222222221 1112244566
Q ss_pred eeecccCCCCceecCCCcccCCCCccEEEeccC-CCCccccCC
Q 014100 337 YLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC-PTMKIFSQG 378 (430)
Q Consensus 337 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c-~~l~~l~~~ 378 (430)
.+.+..||++.. +|.+..+.+.+| .++...|..
T Consensus 833 ~~~ve~~p~l~~---------~P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 833 ELIVEECPKLGK---------LPLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred heehhcCccccc---------CccccccceeccccceeecCCc
Confidence 677777776543 456667777776 555555544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-10 Score=94.83 Aligned_cols=159 Identities=21% Similarity=0.220 Sum_probs=108.3
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.++..|.++.+ +++..+|. +..+.||++|++++| +++++ |.++ ..+++|+.|++. +..+...|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln~~nn-qie~l---------p~~i-ssl~klr~lnvg-mnrl~~lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLNLSNN-QIEEL---------PTSI-SSLPKLRILNVG-MNRLNILP 95 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc--HHHhhhhhhhhcccc-hhhhc---------Chhh-hhchhhhheecc-hhhhhcCc
Confidence 5677788888886 56666665 778999999999987 77777 7776 889999999986 56777777
Q ss_pred cCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
.+ .+.+|.|+.|++.++. +..-. +.+ ....+..|+-|++++ +.+
T Consensus 96 rg---fgs~p~levldltynn-l~e~~-------------lpg------------------nff~m~tlralyl~d-ndf 139 (264)
T KOG0617|consen 96 RG---FGSFPALEVLDLTYNN-LNENS-------------LPG------------------NFFYMTTLRALYLGD-NDF 139 (264)
T ss_pred cc---cCCCchhhhhhccccc-ccccc-------------CCc------------------chhHHHHHHHHHhcC-CCc
Confidence 77 8899999999998865 22110 000 112234566666666 456
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccc
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~ 292 (430)
+.+++.. ..+++|+.|.+.+. .+-++|..++.+..|++|+|.+. .++.+|
T Consensus 140 e~lp~dv----g~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgn-rl~vlp 189 (264)
T KOG0617|consen 140 EILPPDV----GKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGN-RLTVLP 189 (264)
T ss_pred ccCChhh----hhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccc-eeeecC
Confidence 6654432 66777777777663 45556666777777777777664 344443
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.2e-09 Score=104.08 Aligned_cols=93 Identities=17% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCCCccEEEeecCcCCCcCC---chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLK 153 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 153 (430)
.+.+|++|++++| .+.... ....+...++|++++++++.. .... .+....+.. +..+++|+.|+++++....
T Consensus 21 ~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~-~~~~--~~~~~~~~~-l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 21 KLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNET-GRIP--RGLQSLLQG-LTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccccc-CCcc--hHHHHHHHH-HHhcCceeEEEccCCCCCh
Confidence 3556778888776 332211 111244566677777776632 2100 000000111 2345677777777654322
Q ss_pred ccccCcccccCC---CCccEEEEecCC
Q 014100 154 RFCNFTENIIEM---PELRYLAIENCP 177 (430)
Q Consensus 154 ~~~~~~~~~~~l---~~L~~L~l~~c~ 177 (430)
..+.. +..+ ++|++|++++|.
T Consensus 96 ~~~~~---~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 96 DGCGV---LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred hHHHH---HHHHhccCcccEEEeeCCc
Confidence 22111 1122 336666666654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-09 Score=103.86 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=43.6
Q ss_pred CCCCcEEecccCCCceeecccCc-hhhhhcccccEEeeccCcccc-c---ccCCc-ccCCCCCEEEEccCCCccccc---
Q 014100 222 FPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKISECSKLQ-K---LVTPS-WHLENLATLEVSKCHGLINVL--- 292 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~-~---l~~~~-~~l~~L~~L~l~~c~~l~~~~--- 292 (430)
+++|+.|++++| .++......+ .....+++|+.|++++|..-. . +.... ...+.|+.|++.+|. +++..
T Consensus 192 ~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~ 269 (319)
T cd00116 192 NCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKD 269 (319)
T ss_pred CCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHH
Confidence 457777777765 3332221111 011445667777777764322 1 10000 023677888887764 32110
Q ss_pred cccccccccCccEEEEcccc
Q 014100 293 TLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~ 312 (430)
.......+++|++++++++.
T Consensus 270 l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 270 LAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHhcCCCccEEECCCCC
Confidence 00123345677888887754
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.8e-10 Score=91.14 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=88.8
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
.+.+..+|..+..+.+|+.|+++++. +++++... +++++|+.|.+.-+ .+.. .|-+ ++.+|-|++||+++|.
T Consensus 42 HNKl~~vppnia~l~nlevln~~nnq-ie~lp~~i----ssl~klr~lnvgmn-rl~~-lprg-fgs~p~levldltynn 113 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSI----SSLPKLRILNVGMN-RLNI-LPRG-FGSFPALEVLDLTYNN 113 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhcccch-hhhcChhh----hhchhhhheecchh-hhhc-Cccc-cCCCchhhhhhccccc
Confidence 35566777777778888888887543 66655444 67888888877643 3333 3444 6678888888888763
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVT 191 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~ 191 (430)
+.+-. .|..+ ..+..|+.|+++++ ..+-+|.. ++.+.+|+.|.+.++.-+ .+| .+.|++|+
T Consensus 114 -l~e~~-------lpgnf-f~m~tlralyl~dn-dfe~lp~d---vg~lt~lqil~lrdndll-~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 114 -LNENS-------LPGNF-FYMTTLRALYLGDN-DFEILPPD---VGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH 179 (264)
T ss_pred -ccccc-------CCcch-hHHHHHHHHHhcCC-CcccCChh---hhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence 32211 02322 44566777777764 34445544 677777777777776533 334 45677777
Q ss_pred ecCCCCCccc
Q 014100 192 TDNKEPEKLT 201 (430)
Q Consensus 192 l~~~~~~~~~ 201 (430)
+.||-+..++
T Consensus 180 iqgnrl~vlp 189 (264)
T KOG0617|consen 180 IQGNRLTVLP 189 (264)
T ss_pred cccceeeecC
Confidence 7777655443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-08 Score=95.48 Aligned_cols=204 Identities=17% Similarity=0.207 Sum_probs=123.1
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC--chhHHhhcCCCCEEEEecCCCccEeeccc
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 125 (430)
..+++|+...|.+++ +...... .-...|++++.|+++. ++...+ ...++..+|+|+.|+++.|. +....
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~--~~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~--- 188 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIE--EYSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFI--- 188 (505)
T ss_pred hhHHhhhheeecCcc-ccccchh--hhhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhccccccc-ccCCc---
Confidence 367888888888776 5532211 1125688999999987 444323 34467789999999999874 32221
Q ss_pred cccCCcCCCcccccccceeecccccc-ccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCc
Q 014100 126 ELNADKEHIGPLFPKLFELTLMDLPK-LKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 126 ~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~ 199 (430)
.......++.|+.|.+++|.. +.++-. ....||+|+.|.+..+..+.... +..|+.|++++|.+..
T Consensus 189 -----~s~~~~~l~~lK~L~l~~CGls~k~V~~---~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 189 -----SSNTTLLLSHLKQLVLNSCGLSWKDVQW---ILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred -----cccchhhhhhhheEEeccCCCCHHHHHH---HHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 111124578899999988852 222211 15678999999998875333222 4468888998888665
Q ss_pred ccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeeccc---CchhhhhcccccEEeeccCccccccc--CCcccC
Q 014100 200 LTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKE---NDESNKAFANLIRLKISECSKLQKLV--TPSWHL 274 (430)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l 274 (430)
... +.-.+.+|.|+.|.++.+ .+.++... +......+++|++|.+...+ +.+++ ..+..+
T Consensus 261 ~~~-------------~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 261 FDQ-------------GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTL 325 (505)
T ss_pred ccc-------------ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhcc
Confidence 431 123567888888888875 44444221 11112556788888887643 32221 223344
Q ss_pred CCCCEEEEc
Q 014100 275 ENLATLEVS 283 (430)
Q Consensus 275 ~~L~~L~l~ 283 (430)
++|+.|.+.
T Consensus 326 ~nlk~l~~~ 334 (505)
T KOG3207|consen 326 ENLKHLRIT 334 (505)
T ss_pred chhhhhhcc
Confidence 555665543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.7e-08 Score=93.55 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=66.6
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.++.+|+.+.+.+|+ +...+.......|++++.||+++| -+..... + ..+...||+|+.|+++.+. +...
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~---v----~~i~eqLp~Le~LNls~Nr-l~~~ 187 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNWFP---V----LKIAEQLPSLENLNLSSNR-LSNF 187 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhHHH---H----HHHHHhcccchhccccccc-ccCC
Confidence 468889999999874 443332245778999999999987 3322211 1 1235678999999998753 3222
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCC
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKE 196 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~ 196 (430)
. +......++.|+.|.+..|.- +.-. .|+++.|.+..|+
T Consensus 188 ~-~s~~~~~l~~lK~L~l~~CGl-s~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 188 I-SSNTTLLLSHLKQLVLNSCGL-SWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred c-cccchhhhhhhheEEeccCCC-CHHHHHHHHHhCCcHHHhhhhccc
Confidence 1 111144677888888888762 2111 4556666666554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-09 Score=94.86 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=83.0
Q ss_pred ccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCCCC-cccCCCcce
Q 014100 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPE-KLTSEENFF 207 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~-~~~~~~~l~ 207 (430)
..|.+|+.|++++..--..+... +..=.+|+.|+++.|.+++.+. +..|.+|+++.|... ....
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt----- 278 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNT---IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT----- 278 (419)
T ss_pred HHHHhhhhccccccccCcHHHHH---HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh-----
Confidence 44555666666554322222111 3344456666666666655544 445666666666522 1110
Q ss_pred eccCccccCCcCCCCCCCcEEecccCCCceeecccCchh-hhhcccccEEeeccCccccc-ccCCcccCCCCCEEEEccC
Q 014100 208 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDES-NKAFANLIRLKISECSKLQK-LVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c 285 (430)
-. -...-++|+.|.+++|.. .+....+.. ...+++|..|++++|..+.. ....+..|+.|++|.++.|
T Consensus 279 ------v~--V~hise~l~~LNlsG~rr--nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 279 ------VA--VAHISETLTQLNLSGYRR--NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred ------HH--HhhhchhhhhhhhhhhHh--hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 00 011235777777776632 111111111 16677788888877766652 2234557777888888888
Q ss_pred CCccccccccccccccCccEEEEcccc
Q 014100 286 HGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 286 ~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+-.-... .+.+.|.|.+|++.+|-
T Consensus 349 Y~i~p~~~~-~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 349 YDIIPETLL-ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCCChHHee-eeccCcceEEEEecccc
Confidence 654321111 24567888888888773
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-08 Score=89.75 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=103.5
Q ss_pred CCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCc
Q 014100 224 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 303 (430)
Q Consensus 224 ~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 303 (430)
+|+.|||+. ..++.- ....++..|..|+.|.+.+...-+.+-..+..-.+|+.|+++.|++++......+..+|..|
T Consensus 186 Rlq~lDLS~-s~it~s--tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVS--TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcch-hheeHH--HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 577777776 233331 12223366777888888775433333334445567888888888887766555556778888
Q ss_pred cEEEEcccccchhhhcccccccCC---------------------cceeecccceeecccCCCCceecCCCcccCCCCcc
Q 014100 304 GRMKIADCKMIEQIIQLQVGEEAK---------------------GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE 362 (430)
Q Consensus 304 ~~L~l~~c~~l~~~~~~~~~~~~~---------------------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~ 362 (430)
++|++++|...++++..-+..+.+ ....+|.|.+|+++.|..++.-+. ..+..|+.|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~ 341 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQ 341 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcchhe
Confidence 888888886555443111000000 012367788888888777765322 1234589999
Q ss_pred EEEeccCCCCcc-ccCCCcCCCCceEEecccCC
Q 014100 363 HVVVRQCPTMKI-FSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 363 ~L~l~~c~~l~~-l~~~~~~~~~L~~l~l~~~~ 394 (430)
+|.++.|..+-. .-.++...|+|.++++.|+-
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 999999976631 11345578999999998864
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.8e-07 Score=77.91 Aligned_cols=108 Identities=21% Similarity=0.307 Sum_probs=30.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
...++++|+++++. ++.+- .. ...+.+|+.|++++| .+..+.. +..+++|++|++++| .+.++
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L---~~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i------- 79 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NL---GATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSI------- 79 (175)
T ss_dssp ---------------------S-----TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S--------
T ss_pred cccccccccccccc-ccccc-ch---hhhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCcc-------
Confidence 33457777777765 55431 11 024677778888776 4554332 456777888888776 45444
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+.++...+|+|++|+++++ .+.++..- ..+..+++|+.|++.++|
T Consensus 80 --~~~l~~~lp~L~~L~L~~N-~I~~l~~l-~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 80 --SEGLDKNLPNLQELYLSNN-KISDLNEL-EPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp --CHHHHHH-TT--EEE-TTS----SCCCC-GGGGG-TT--EEE-TT-G
T ss_pred --ccchHHhCCcCCEEECcCC-cCCChHHh-HHHHcCCCcceeeccCCc
Confidence 1122235677888877763 34443221 115566777777776665
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-08 Score=99.13 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=33.9
Q ss_pred HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccc-cccccccc--cCcccccCCCCccEEEEecCC
Q 014100 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD-LPKLKRFC--NFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 101 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~l~~~~--~~~~~~~~l~~L~~L~l~~c~ 177 (430)
...+++|+.|.+.+|..+.... + ..+...++.|+.|++.+ +......+ ... ....+++|+.|++..|.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~----~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDS----L----DALALKCPNLEELDLSGCCLLITLSPLLLLL-LLSICRKLKSLDLSGCG 254 (482)
T ss_pred HhhCchhhHhhhcccccCChhh----H----HHHHhhCchhheecccCcccccccchhHhhh-hhhhcCCcCccchhhhh
Confidence 3345666666666665554320 0 11124556666666655 22221111 000 13345666666666665
Q ss_pred Cccc
Q 014100 178 DMET 181 (430)
Q Consensus 178 ~l~~ 181 (430)
.+++
T Consensus 255 ~isd 258 (482)
T KOG1947|consen 255 LVTD 258 (482)
T ss_pred ccCc
Confidence 4443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5e-08 Score=98.28 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=46.1
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC-CCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC-DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
+++|+.|.+.+|..+....-..+...+++|+.|++++| ....... .. ...+...+++|+.|++..+..+++..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~--~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LL--LLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hH--hhhhhhhcCCcCccchhhhhccCchh
Confidence 56666666666655554322233556666666666653 1111110 00 00112445666666666655444331
Q ss_pred cCcccccCCCCccEEEEecCCCcc
Q 014100 157 NFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~ 180 (430)
.... ...+++|++|.+.+|..++
T Consensus 261 l~~l-~~~c~~L~~L~l~~c~~lt 283 (482)
T KOG1947|consen 261 LSAL-ASRCPNLETLSLSNCSNLT 283 (482)
T ss_pred HHHH-HhhCCCcceEccCCCCccc
Confidence 1111 1236666666666666543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-06 Score=77.98 Aligned_cols=137 Identities=14% Similarity=0.126 Sum_probs=68.8
Q ss_pred CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcc
Q 014100 184 SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
+..++.|++++|.+..++ ...++|++|.+.+|++++.++. ...++|++|.+++|..
T Consensus 51 ~~~l~~L~Is~c~L~sLP------------------~LP~sLtsL~Lsnc~nLtsLP~------~LP~nLe~L~Ls~Cs~ 106 (426)
T PRK15386 51 ARASGRLYIKDCDIESLP------------------VLPNELTEITIENCNNLTTLPG------SIPEGLEKLTVCHCPE 106 (426)
T ss_pred hcCCCEEEeCCCCCcccC------------------CCCCCCcEEEccCCCCcccCCc------hhhhhhhheEccCccc
Confidence 456677777777544422 2234677777777777665532 1224677777777766
Q ss_pred cccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccC
Q 014100 264 LQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 264 l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
+..+|. +|+.|++.+ .....+.. --++|++|.+.+........ . ....+++|+.|.+.+|
T Consensus 107 L~sLP~------sLe~L~L~~-n~~~~L~~-----LPssLk~L~I~~~n~~~~~~------l--p~~LPsSLk~L~Is~c 166 (426)
T PRK15386 107 ISGLPE------SVRSLEIKG-SATDSIKN-----VPNGLTSLSINSYNPENQAR------I--DNLISPSLKTLSLTGC 166 (426)
T ss_pred cccccc------ccceEEeCC-CCCccccc-----CcchHhheeccccccccccc------c--ccccCCcccEEEecCC
Confidence 655543 355555542 22222211 01345666664322110000 0 0112467777888777
Q ss_pred CCCceecCCCcccCCCCccEEEeccC
Q 014100 344 PSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 344 ~~l~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
..+. ++.+. -.+|+.|.+..+
T Consensus 167 ~~i~-LP~~L----P~SLk~L~ls~n 187 (426)
T PRK15386 167 SNII-LPEKL----PESLQSITLHIE 187 (426)
T ss_pred Cccc-Ccccc----cccCcEEEeccc
Confidence 6442 22211 246777777553
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.4e-06 Score=57.88 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=30.7
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccc
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (430)
|+|++|++++| ++..+++ ..+.++++|++|++++| .+..+ +.+.+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N-~l~~i---------~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNN-NLTSI---------PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSS-SESEE---------ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCC-ccCcc---------CHHHHcCCCCCCEEeCcCC
Confidence 35555666555 4444433 22555666666666654 44444 3334455555666555554
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.2e-05 Score=74.34 Aligned_cols=38 Identities=24% Similarity=0.451 Sum_probs=19.1
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
+.+++.|++++| ++..++. + -++|++|.+++|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---L--P~sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---L--PNELTEITIENCNNLTTL 88 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---C--CCCCcEEEccCCCCcccC
Confidence 455566666655 4444321 1 124666666655555444
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-06 Score=72.03 Aligned_cols=121 Identities=21% Similarity=0.224 Sum_probs=49.6
Q ss_pred hhhhhhhhccc-CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 38 STIQKCYEEMI-GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
+.|+.+ +.+. .+.+|+.|+++++. ++.+. +. ..+++|+.|+++++ .+..+.+ .+...+++|++|.+++|
T Consensus 29 n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~-~l----~~L~~L~~L~L~~N-~I~~i~~-~l~~~lp~L~~L~L~~N- 98 (175)
T PF14580_consen 29 NQISTI-ENLGATLDKLEVLDLSNNQ-ITKLE-GL----PGLPRLKTLDLSNN-RISSISE-GLDKNLPNLQELYLSNN- 98 (175)
T ss_dssp --------S--TT-TT--EEE-TTS---S--T-T--------TT--EEE--SS----S-CH-HHHHH-TT--EEE-TTS-
T ss_pred cccccc-cchhhhhcCCCEEECCCCC-Ccccc-Cc----cChhhhhhcccCCC-CCCcccc-chHHhCCcCCEEECcCC-
Confidence 555555 4555 57899999999887 77542 33 57899999999987 5666433 33457999999999988
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
.+.++-. +. . ...+++|+.|++.++|-...--....-+..+|+|+.|+-...
T Consensus 99 ~I~~l~~---l~----~-L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 99 KISDLNE---LE----P-LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp ---SCCC---CG----G-GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cCCChHH---hH----H-HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 5554421 11 1 267899999999997743221111111456888888876543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-07 Score=86.91 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=54.1
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
.-..|+|..+ .++.+ |...++.+++|+.||+++| .+..| ....+..+++|.+|.+.+.+++++++.+.
T Consensus 68 ~tveirLdqN-~I~~i-P~~aF~~l~~LRrLdLS~N-~Is~I---------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSI-PPGAFKTLHRLRRLDLSKN-NISFI---------APDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cceEEEeccC-CcccC-Chhhccchhhhceeccccc-chhhc---------ChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 4456677664 45554 4455888888888888887 66666 34445778888888887777788776543
Q ss_pred ccccCCCCccEEEEec
Q 014100 160 ENIIEMPELRYLAIEN 175 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~ 175 (430)
...+.+|+.|.+.-
T Consensus 136 --F~gL~slqrLllNa 149 (498)
T KOG4237|consen 136 --FGGLSSLQRLLLNA 149 (498)
T ss_pred --hhhHHHHHHHhcCh
Confidence 44555666655543
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.4e-07 Score=83.02 Aligned_cols=248 Identities=18% Similarity=0.185 Sum_probs=143.8
Q ss_pred cchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEec
Q 014100 36 LNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 36 ~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 114 (430)
..|.|+.||+. ...+++|+.|+++++. ++.|-... ...+++|-.|.+.+..+++. .|...+.++..|+.|.+..
T Consensus 75 dqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~A---F~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 75 DQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDA---FKGLASLLSLVLYGNNKITD-LPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred ccCCcccCChhhccchhhhceecccccc-hhhcChHh---hhhhHhhhHHHhhcCCchhh-hhhhHhhhHHHHHHHhcCh
Confidence 34788899866 6688999999999776 66532222 13456677777777556776 4556688888888888876
Q ss_pred CCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----------
Q 014100 115 CDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----------- 183 (430)
Q Consensus 115 c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----------- 183 (430)
| .+..+ +...+..+++|..|.+.+. .+..++.+. ...+..++.+.+...+.+-+-.
T Consensus 150 n-~i~Ci---------r~~al~dL~~l~lLslyDn-~~q~i~~~t--f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 150 N-HINCI---------RQDALRDLPSLSLLSLYDN-KIQSICKGT--FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred h-hhcch---------hHHHHHHhhhcchhcccch-hhhhhcccc--ccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 6 44443 3334466777777777663 445554321 4455566666655444221110
Q ss_pred -----------CCcceEEEecC-------CCCCcccCCCcceeccCccccC--CcCCCCCCCcEEecccCCCceeecccC
Q 014100 184 -----------SNSVVHVTTDN-------KEPEKLTSEENFFLTDQIQPLF--DEKVAFPQLRYLELSRLHKVQHLWKEN 243 (430)
Q Consensus 184 -----------~~~L~~L~l~~-------~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~l~~~~~~~ 243 (430)
+..+.+-++.. |...+..+ ++.-.+.....- .-.+.+++|++|++++ +.++.+....
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s--~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~a 293 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS--RLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGA 293 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH--hhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhh
Confidence 00111111100 00000000 000000000000 0135678999999988 6888887777
Q ss_pred chhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccccCccEEEEcc
Q 014100 244 DESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 244 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 310 (430)
+ .....++.|.+... .+..+.. .+..+..|+.|++++. .++.+.+. .+..+.+|.+|.+-.
T Consensus 294 F---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~-aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 294 F---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPG-AFQTLFSLSTLNLLS 355 (498)
T ss_pred h---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecc-cccccceeeeeehcc
Confidence 7 88888999998874 5554433 3447788999999885 46555433 355677778877643
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.6e-06 Score=73.49 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=39.9
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
....|.++.|+++. +.+..+.. + ..+++|+.|++++. .++.+-.+-..+-+.+.|.+.+. .+.++. .++
T Consensus 303 vKL~Pkir~L~lS~-N~i~~v~n--L---a~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS---GL~ 371 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQ-NRIRTVQN--L---AELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQN-KIETLS---GLR 371 (490)
T ss_pred hhhccceeEEeccc-cceeeehh--h---hhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhh-hHhhhh---hhH
Confidence 34456666666665 34444322 2 55566666666652 33333222224445555555542 344433 244
Q ss_pred cccCccEEEEcc
Q 014100 299 SLVNLGRMKIAD 310 (430)
Q Consensus 299 ~l~~L~~L~l~~ 310 (430)
.+-+|..|++++
T Consensus 372 KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 372 KLYSLVNLDLSS 383 (490)
T ss_pred hhhhheeccccc
Confidence 555556666554
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.7e-05 Score=74.85 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=83.8
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhc-CCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCL-NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
++.++.|++.+. .+..+++. ...+ ++|++|+++++ .+..+ |..+ ..+++|+.|++..+ .+.+++
T Consensus 115 ~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l---------~~~~-~~l~~L~~L~l~~N-~l~~l~ 179 (394)
T COG4886 115 LTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSDN-KIESL---------PSPL-RNLPNLKNLDLSFN-DLSDLP 179 (394)
T ss_pred ccceeEEecCCc-ccccCccc--cccchhhccccccccc-chhhh---------hhhh-hccccccccccCCc-hhhhhh
Confidence 345555555543 34443332 2223 25666666555 33333 1121 45556666666553 344443
Q ss_pred cCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 231 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 231 (430)
.. ....+.|+.|+++++. ++.+| +..|+++.+++|...... .....+.++..+.+.
T Consensus 180 ~~---~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~---------------~~~~~~~~l~~l~l~ 240 (394)
T COG4886 180 KL---LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELL---------------SSLSNLKNLSGLELS 240 (394)
T ss_pred hh---hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecc---------------hhhhhcccccccccC
Confidence 32 2245556666665543 44444 223666666666422211 123445555555544
Q ss_pred cCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCc
Q 014100 232 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 288 (430)
+ +.+..+ +..+ ..++++++|+++++ .+..++. +..+.+++.|++++....
T Consensus 241 ~-n~~~~~-~~~~---~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 241 N-NKLEDL-PESI---GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred C-ceeeec-cchh---ccccccceeccccc-ccccccc-ccccCccCEEeccCcccc
Confidence 3 233332 2222 56666777777764 5555544 667777888877765433
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=50.41 Aligned_cols=58 Identities=28% Similarity=0.336 Sum_probs=29.6
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccC
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 285 (430)
|+|++|+++++ +++.++...+ ..+++|++|+++++ .+..+++ .+..+++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT---TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 34555666553 5555555544 55555555555543 3344432 2345555555555544
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=2.3e-05 Score=81.32 Aligned_cols=112 Identities=17% Similarity=0.280 Sum_probs=67.1
Q ss_pred CCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccC
Q 014100 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 129 (430)
-.+|++|++++...+..-|... ....+|+|+.|.+.+-. +....-..+..++|||..|||+++ ++..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-------- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK--IGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNL-------- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHH--HhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCc--------
Confidence 4668888888765555445332 11457888888887642 222112234667888888888876 45444
Q ss_pred CcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCC
Q 014100 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 130 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 178 (430)
.++ +.+.+|+.|.+.+++... ...-. .+..+.+|+.|+|++-..
T Consensus 189 --~GI-S~LknLq~L~mrnLe~e~-~~~l~-~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 189 --SGI-SRLKNLQVLSMRNLEFES-YQDLI-DLFNLKKLRVLDISRDKN 232 (699)
T ss_pred --HHH-hccccHHHHhccCCCCCc-hhhHH-HHhcccCCCeeecccccc
Confidence 222 667788888777654222 11111 156778888888876543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.49 E-value=6.4e-06 Score=80.34 Aligned_cols=116 Identities=22% Similarity=0.247 Sum_probs=74.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+.++|.+...|..|+.+.+..+. +..++... ..+..|.+|+++.+ .+.. .|.. +..|+ |++|.+++| +
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i----~~L~~lt~l~ls~N-qlS~-lp~~-lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNC-IRTIPEAI----CNLEALTFLDLSSN-QLSH-LPDG-LCDLP-LKVLIVSNN-K 154 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhcc-ceecchhh----hhhhHHHHhhhccc-hhhc-CChh-hhcCc-ceeEEEecC-c
Confidence 6777888888888888888877554 44333333 66777778888775 3343 3433 33444 788888876 6
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
++.+ |..+ +..+.|..|+.+.| .+..++.. ++.+.+|+.|.+.++.
T Consensus 155 l~~l---------p~~i-g~~~tl~~ld~s~n-ei~slpsq---l~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 155 LTSL---------PEEI-GLLPTLAHLDVSKN-EIQSLPSQ---LGYLTSLRDLNVRRNH 200 (722)
T ss_pred cccC---------Cccc-ccchhHHHhhhhhh-hhhhchHH---hhhHHHHHHHHHhhhh
Confidence 6666 6666 46677777777764 45555444 5666666666666544
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=8e-05 Score=73.17 Aligned_cols=178 Identities=20% Similarity=0.247 Sum_probs=114.5
Q ss_pred hhcccCCCCcceeeccccccceeeccCCCCCCCCC-CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEee
Q 014100 44 YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFF-NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL 122 (430)
Q Consensus 44 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 122 (430)
+..+..++.+..|++.+.. +.++.... ..+ ++|+.|++++. .+..++.. ++.+++|+.|++++| .+.++
T Consensus 109 ~~~~~~~~~l~~L~l~~n~-i~~i~~~~----~~~~~nL~~L~l~~N-~i~~l~~~--~~~l~~L~~L~l~~N-~l~~l- 178 (394)
T COG4886 109 ISELLELTNLTSLDLDNNN-ITDIPPLI----GLLKSNLKELDLSDN-KIESLPSP--LRNLPNLKNLDLSFN-DLSDL- 178 (394)
T ss_pred chhhhcccceeEEecCCcc-cccCcccc----ccchhhccccccccc-chhhhhhh--hhccccccccccCCc-hhhhh-
Confidence 3445566788888888665 55543333 445 38888888876 45544312 667888999999888 55555
Q ss_pred ccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCC
Q 014100 123 HLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPE 198 (430)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~ 198 (430)
|... ...++|+.|++++. .+.+++.. +.....|+++.+.++..+.... ...+..+.+.++.+.
T Consensus 179 --------~~~~-~~~~~L~~L~ls~N-~i~~l~~~---~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 179 --------PKLL-SNLSNLNNLDLSGN-KISDLPPE---IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred --------hhhh-hhhhhhhheeccCC-ccccCchh---hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee
Confidence 2221 26788888888874 56666543 2344558888888775333332 334555555555544
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccc
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ 265 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 265 (430)
... ...+.+++++.|++++ +.++++.. + ....+++.|++++.....
T Consensus 246 ~~~---------------~~~~~l~~l~~L~~s~-n~i~~i~~--~---~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 246 DLP---------------ESIGNLSNLETLDLSN-NQISSISS--L---GSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ecc---------------chhccccccceecccc-cccccccc--c---cccCccCEEeccCccccc
Confidence 321 2356677899999988 47888765 3 788899999998854433
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.28 E-value=1.5e-05 Score=77.92 Aligned_cols=138 Identities=16% Similarity=0.214 Sum_probs=95.4
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
.+.+.-+|+.+..+..|.+|+|+.+. ++.++.+. .+--|+.|.++++ +++.+++. ++..+.|..|+.+.|
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~l-----C~lpLkvli~sNN-kl~~lp~~--ig~~~tl~~ld~s~n- 176 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGL-----CDLPLKVLIVSNN-KLTSLPEE--IGLLPTLAHLDVSKN- 176 (722)
T ss_pred hccceecchhhhhhhHHHHhhhccch-hhcCChhh-----hcCcceeEEEecC-ccccCCcc--cccchhHHHhhhhhh-
Confidence 37788899999999999999998654 66544433 3456888988876 66765544 557888999999988
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVT 191 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~ 191 (430)
.+..+ |..+ ..+.+|+.|++..+ .+.++|.. .. .-.|..|+++ |.++..+| ...|++|.
T Consensus 177 ei~sl---------psql-~~l~slr~l~vrRn-~l~~lp~E---l~-~LpLi~lDfS-cNkis~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 177 EIQSL---------PSQL-GYLTSLRDLNVRRN-HLEDLPEE---LC-SLPLIRLDFS-CNKISYLPVDFRKMRHLQVLQ 240 (722)
T ss_pred hhhhc---------hHHh-hhHHHHHHHHHhhh-hhhhCCHH---Hh-CCceeeeecc-cCceeecchhhhhhhhheeee
Confidence 55555 4444 66777777777764 45555544 44 2236677776 55677777 45777888
Q ss_pred ecCCCCCcc
Q 014100 192 TDNKEPEKL 200 (430)
Q Consensus 192 l~~~~~~~~ 200 (430)
+++|++.+-
T Consensus 241 LenNPLqSP 249 (722)
T KOG0532|consen 241 LENNPLQSP 249 (722)
T ss_pred eccCCCCCC
Confidence 888876553
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00015 Score=67.01 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=58.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccce-ee--ccCCCCCCCCCCCccEEEeecCcCCCcCC----chh------HHhhc
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQ-EI--WHGQALPVSFFNNLRHLVVDDCTNMLSAI----PAN------LIRCL 104 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~-~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~------~~~~l 104 (430)
...+-+.+.+.++..+++++|+++. +. .. |.+. ...+-++|+..++++- ++..+ |.. .+.++
T Consensus 17 ed~~~v~~~~~~~~s~~~l~lsgnt-~G~EAa~~i~~--~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~ 91 (382)
T KOG1909|consen 17 EDEKDVEEELEPMDSLTKLDLSGNT-FGTEAARAIAK--VLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGC 91 (382)
T ss_pred hhhhhHHHHhcccCceEEEeccCCc-hhHHHHHHHHH--HHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcC
Confidence 4455666777888999999999876 32 10 1110 1134567888777762 23222 111 24467
Q ss_pred CCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccc
Q 014100 105 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 105 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (430)
++|++|++|+|---...+ .++.+ +...+..|++|.+.+|
T Consensus 92 ~~L~~ldLSDNA~G~~g~--~~l~~----ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGI--RGLEE----LLSSCTDLEELYLNNC 130 (382)
T ss_pred CceeEeeccccccCccch--HHHHH----HHHhccCHHHHhhhcC
Confidence 899999999884321110 01111 1345678899998887
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=6.1e-05 Score=68.05 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=44.1
Q ss_pred ccccEEeeccCcccc--cccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCc
Q 014100 251 ANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 328 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 328 (430)
+.+++++...|...- .+-.....||++..+.+..|+ ++..........+|.+-.|.++. .++.++-.. +.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasv------D~ 244 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV------DA 244 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHH------HH
Confidence 456666666664322 111122356667666666664 44443333344455555555543 233333211 13
Q ss_pred ceeecccceeecccCCCCcee
Q 014100 329 CVVFEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 329 ~~~~~~L~~L~l~~c~~l~~~ 349 (430)
...|+.|..|++.+.|-...+
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HcCCchhheeeccCCcccccc
Confidence 334666666666666654433
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00023 Score=74.00 Aligned_cols=34 Identities=38% Similarity=0.469 Sum_probs=15.3
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEec
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 114 (430)
+||||+.||++++ ++..+ ..++.++||++|.+.+
T Consensus 171 sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCC-CccCc---HHHhccccHHHHhccC
Confidence 4555555555554 33332 1144445555554443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.001 Score=69.13 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=68.1
Q ss_pred Ccceeeccccccce-eeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 52 DIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 52 ~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
.++.|+|+++. +. .++.. ...+++|+.|++++| .+....|.. +..+++|+.|++++|.-...+
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~----i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~i--------- 482 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPND----ISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNSFNGSI--------- 482 (623)
T ss_pred EEEEEECCCCC-ccccCCHH----HhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCCCCCCC---------
Confidence 36777777665 33 22222 256788888888887 455444443 677888888888887433333
Q ss_pred cCCCcccccccceeeccccccccccccCcccccC-CCCccEEEEecCCCcc
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE-MPELRYLAIENCPDME 180 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-l~~L~~L~l~~c~~l~ 180 (430)
|..+ ..+++|+.|+++++.....+|.. +.. ..++..+++.++..+-
T Consensus 483 P~~l-~~L~~L~~L~Ls~N~l~g~iP~~---l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 483 PESL-GQLTSLRILNLNGNSLSGRVPAA---LGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred chHH-hcCCCCCEEECcCCcccccCChH---HhhccccCceEEecCCcccc
Confidence 4444 67788888888877655555544 222 3456677777665443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00015 Score=65.69 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=8.3
Q ss_pred ccCCCCccEEEEecCC
Q 014100 162 IIEMPELRYLAIENCP 177 (430)
Q Consensus 162 ~~~l~~L~~L~l~~c~ 177 (430)
++++|.|+.+.+.+++
T Consensus 395 IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNP 410 (490)
T ss_pred cccccHHHHHhhcCCC
Confidence 4555555555555444
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0017 Score=67.44 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=57.3
Q ss_pred ccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc
Q 014100 81 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 160 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 160 (430)
++.|+++++ .+....|.. +..+++|+.|++++|.-...+ |..+ ..+++|+.|+++++.....+|..
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~i---------P~~~-~~l~~L~~LdLs~N~lsg~iP~~-- 485 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNI---------PPSL-GSITSLEVLDLSYNSFNGSIPES-- 485 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcC---------ChHH-hCCCCCCEEECCCCCCCCCCchH--
Confidence 677888876 455445544 677888889988887433333 4443 77888888888887544455544
Q ss_pred cccCCCCccEEEEecCCC
Q 014100 161 NIIEMPELRYLAIENCPD 178 (430)
Q Consensus 161 ~~~~l~~L~~L~l~~c~~ 178 (430)
+..+++|+.|++++|..
T Consensus 486 -l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 486 -LGQLTSLRILNLNGNSL 502 (623)
T ss_pred -HhcCCCCCEEECcCCcc
Confidence 67788888888887753
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0018 Score=41.55 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=25.6
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
++|++|+++++ .+..+++. +++|++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence 46788888876 56665442 667888888888887 45444
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0034 Score=57.06 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=33.0
Q ss_pred hhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 43 CYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 43 l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
+..-+..+|+|+.|+++.++ +....... + ....+|+.|.+.+. .+.-....+....+|.+++|.++.|
T Consensus 89 I~~ile~lP~l~~LNls~N~-L~s~I~~l--p-~p~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNS-LSSDIKSL--P-LPLKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HHHHHhcCccceEeeccCCc-CCCccccC--c-ccccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhccc
Confidence 33334566677777776443 44211111 1 23446667766654 2221112233555666666666655
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0012 Score=65.22 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=7.1
Q ss_pred ccCCCCcceeecccc
Q 014100 47 MIGFRDIKYLQLGHF 61 (430)
Q Consensus 47 l~~~~~L~~L~l~~~ 61 (430)
+..+.+|+.|++.++
T Consensus 91 l~~~~~l~~l~l~~n 105 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN 105 (414)
T ss_pred cccccceeeeecccc
Confidence 444445555554443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.00014 Score=73.36 Aligned_cols=58 Identities=24% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEcc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 284 (430)
..++.|++|||+. +.+..++--.. ..+. |+.|.+.+. .++.+ .++.++.+|+.|+++.
T Consensus 206 r~l~~LkhLDlsy-N~L~~vp~l~~---~gc~-L~~L~lrnN-~l~tL-~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSY-NCLRHVPQLSM---VGCK-LQLLNLRNN-ALTTL-RGIENLKSLYGLDLSY 263 (1096)
T ss_pred Hhccccccccccc-chhccccccch---hhhh-heeeeeccc-HHHhh-hhHHhhhhhhccchhH
Confidence 3455666666654 34444432221 2222 555555552 33333 2344555555555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.024 Score=48.86 Aligned_cols=107 Identities=24% Similarity=0.303 Sum_probs=54.5
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCc
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 131 (430)
+...++|+++. +.++ .....+++|..|.+.++ .++.+.|. +...+++|+.|.+.+| ++..+.+++.+
T Consensus 43 ~~d~iDLtdNd-l~~l-----~~lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl~pL---- 109 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL-----DNLPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNN-SIQELGDLDPL---- 109 (233)
T ss_pred ccceecccccc-hhhc-----ccCCCccccceEEecCC-cceeeccc-hhhhccccceEEecCc-chhhhhhcchh----
Confidence 45556666554 2221 11134666777777665 45554332 2445667777777766 45544332211
Q ss_pred CCCcccccccceeeccccccccccccCcccccCCCCccEEEEec
Q 014100 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 175 (430)
Q Consensus 132 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 175 (430)
..||+|++|.+-+++--..--....-+..+|+|++|+..+
T Consensus 110 ----a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 110 ----ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ----ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 4456777777766542211111111145566777776654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.012 Score=37.69 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=16.3
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecC
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC 89 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 89 (430)
+|++|+++++. ++++.... ..+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~-i~~l~~~l----~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITDLPPEL----SNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SSHGGHG----TTCTTSSEEEETSS
T ss_pred cceEEEccCCC-CcccCchH----hCCCCCCEEEecCC
Confidence 45666666554 44432212 45666666666655
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.0039 Score=61.64 Aligned_cols=105 Identities=14% Similarity=0.174 Sum_probs=72.2
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
...+.+|+.+.+ .++.+.++...+..+++|++|+++++. +.+++.. ..++.|+.|+++++ .+.
T Consensus 91 l~~~~~l~~l~l----------~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l-----~~l~~L~~L~l~~N-~i~ 153 (414)
T KOG0531|consen 91 LSKLKSLEALDL----------YDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGL-----STLTLLKELNLSGN-LIS 153 (414)
T ss_pred cccccceeeeec----------cccchhhcccchhhhhcchheeccccc-cccccch-----hhccchhhheeccC-cch
Confidence 344666777776 667788886657889999999999776 7764432 46777999999986 344
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcC-CCcccccccceeecccc
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE-HIGPLFPKLFELTLMDL 149 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~ 149 (430)
.+.. +..+.+|+.+++++|. +..+ +. . ...+.+++.+.+.++
T Consensus 154 ~~~~---~~~l~~L~~l~l~~n~-i~~i---------e~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 154 DISG---LESLKSLKLLDLSYNR-IVDI---------ENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hccC---CccchhhhcccCCcch-hhhh---------hhhh-hhhccchHHHhccCC
Confidence 4222 4458889999999883 4333 11 1 156778888888774
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.049 Score=47.03 Aligned_cols=84 Identities=17% Similarity=0.365 Sum_probs=55.3
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
..+...+++.++. +..+ +. +.++++|..|.+.+| .+..+ ...+...+|+|..|.+.++ ++..+..
T Consensus 41 ~d~~d~iDLtdNd-l~~l-~~--lp~l~rL~tLll~nN-rIt~I---------~p~L~~~~p~l~~L~LtnN-si~~l~d 105 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKL-DN--LPHLPRLHTLLLNNN-RITRI---------DPDLDTFLPNLKTLILTNN-SIQELGD 105 (233)
T ss_pred ccccceecccccc-hhhc-cc--CCCccccceEEecCC-cceee---------ccchhhhccccceEEecCc-chhhhhh
Confidence 4566778888763 3332 22 567889999999877 67776 4555577888999999874 3443321
Q ss_pred CcccccCCCCccEEEEecCC
Q 014100 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~ 177 (430)
- ..+..+|+|+.|.+-+++
T Consensus 106 l-~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 L-DPLASCPKLEYLTLLGNP 124 (233)
T ss_pred c-chhccCCccceeeecCCc
Confidence 1 115677788888777665
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.003 Score=54.28 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=18.0
Q ss_pred ccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 138 FPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 138 l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.++|+.|++++|+.+++. +...+..+++|+.|.+.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~--GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG--GLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred ccchheeeccCCCeechh--HHHHHHHhhhhHHHHhcCch
Confidence 345555555555555443 22224445555555554433
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.001 Score=67.30 Aligned_cols=90 Identities=18% Similarity=0.198 Sum_probs=54.4
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
|.+..+-.++.=++.|+.|+|+++. ++++- . ...+++|+.||++++ .+..++-.+ ..+|. |+.|++++| .
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk-~~~v~-~----Lr~l~~LkhLDlsyN-~L~~vp~l~-~~gc~-L~~L~lrnN-~ 243 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNK-FTKVD-N----LRRLPKLKHLDLSYN-CLRHVPQLS-MVGCK-LQLLNLRNN-A 243 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhh-hhhhH-H----HHhcccccccccccc-hhccccccc-hhhhh-heeeeeccc-H
Confidence 5666666666677888888888776 54422 1 256888888888875 455544433 22344 777887776 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccc
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (430)
++.+. ++ .++.+|+.|+++.
T Consensus 244 l~tL~----------gi-e~LksL~~LDlsy 263 (1096)
T KOG1859|consen 244 LTTLR----------GI-ENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhh----------hH-HhhhhhhccchhH
Confidence 44442 11 4555555555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.027 Score=50.49 Aligned_cols=15 Identities=20% Similarity=0.173 Sum_probs=8.0
Q ss_pred HhhcCCCCEEEEecC
Q 014100 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~c 115 (430)
+..+|+|++|++++|
T Consensus 87 ~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGN 101 (260)
T ss_pred hhhCCceeEEeecCC
Confidence 334455555555555
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.0081 Score=51.65 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=8.4
Q ss_pred ecccceeecccCCCCcee
Q 014100 332 FEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~ 349 (430)
.++|+.|++++|+.+++.
T Consensus 150 ~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDG 167 (221)
T ss_pred ccchheeeccCCCeechh
Confidence 344444444444444443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.0022 Score=57.73 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=58.4
Q ss_pred CCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccC
Q 014100 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 129 (430)
+.+.+.|++.+|. +.+|..+ ..++.|+.|.|+-+ ++.++.| +..|.+|++|.+..| .+.++ +.+..
T Consensus 18 l~~vkKLNcwg~~-L~DIsic-----~kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN-~I~sl---dEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISIC-----EKMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKN-CIESL---DELEY 83 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHH-----HhcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhc-ccccH---HHHHH
Confidence 4566777777776 6654333 36778888877764 4555444 556777888877766 33332 11111
Q ss_pred CcCCCcccccccceeeccccccccccccCcc--cccCCCCccEEEE
Q 014100 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTE--NIIEMPELRYLAI 173 (430)
Q Consensus 130 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~l~~L~~L~l 173 (430)
..++|+|+.|-|..++-...-..... -+..+|+|++|+=
T Consensus 84 -----LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 -----LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred -----HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 25667777777766543322111000 0234677776653
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.052 Score=50.63 Aligned_cols=148 Identities=18% Similarity=0.158 Sum_probs=72.1
Q ss_pred cccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCC---CCCCCCCCccEEEeecCcCC
Q 014100 16 STPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQA---LPVSFFNNLRHLVVDDCTNM 92 (430)
Q Consensus 16 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~---~~~~~~~~L~~L~l~~c~~l 92 (430)
+-|.||++.+.++-+ .+..-..+-..+...+.|+.+.+..+. +. +.+.. .....+++|+.|++.++. +
T Consensus 155 ~~~~Lrv~i~~rNrl-----en~ga~~~A~~~~~~~~leevr~~qN~-I~--~eG~~al~eal~~~~~LevLdl~DNt-f 225 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRL-----ENGGATALAEAFQSHPTLEEVRLSQNG-IR--PEGVTALAEALEHCPHLEVLDLRDNT-F 225 (382)
T ss_pred CCcceEEEEeecccc-----ccccHHHHHHHHHhccccceEEEeccc-cc--CchhHHHHHHHHhCCcceeeecccch-h
Confidence 446778777733211 111122233334455778888777554 33 11110 111467888888888752 3
Q ss_pred CcCCchh---HHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc-cCcccccCCCCc
Q 014100 93 LSAIPAN---LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC-NFTENIIEMPEL 168 (430)
Q Consensus 93 ~~~~~~~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~~l~~L 168 (430)
+...... .+..+++|++|++++| .+..- |....-..+....|+|+.|.+.++.--.+-. .....+...|.|
T Consensus 226 t~egs~~LakaL~s~~~L~El~l~dc-ll~~~----Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 226 TLEGSVALAKALSSWPHLRELNLGDC-LLENE----GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred hhHHHHHHHHHhcccchheeeccccc-ccccc----cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 3222211 2456677888888887 44333 1111111112346788888887753211100 000002335666
Q ss_pred cEEEEecCC
Q 014100 169 RYLAIENCP 177 (430)
Q Consensus 169 ~~L~l~~c~ 177 (430)
++|.+.+|.
T Consensus 301 ~kLnLngN~ 309 (382)
T KOG1909|consen 301 EKLNLNGNR 309 (382)
T ss_pred HHhcCCccc
Confidence 666666554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.016 Score=52.34 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=60.5
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.+.++|++.+| .+.+ .++..+++.|++|.++=| ++..+- . +..|.+|++|+|..+ .+.++-
T Consensus 17 dl~~vkKLNcwg~-~L~D---Isic~kMp~lEVLsLSvN-kIssL~----------p-l~rCtrLkElYLRkN-~I~sld 79 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDD---ISICEKMPLLEVLSLSVN-KISSLA----------P-LQRCTRLKELYLRKN-CIESLD 79 (388)
T ss_pred HHHHhhhhcccCC-CccH---HHHHHhcccceeEEeecc-ccccch----------h-HHHHHHHHHHHHHhc-ccccHH
Confidence 3667889999888 4554 355789999999999977 555541 1 378899999999863 333332
Q ss_pred cCcccccCCCCccEEEEecCCCccc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMET 181 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~ 181 (430)
.-.. +.++|+|+.|-+..++....
T Consensus 80 EL~Y-LknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 80 ELEY-LKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHH-HhcCchhhhHhhccCCcccc
Confidence 2111 66788999988877765443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=90.94 E-value=1.1 Score=35.80 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=4.9
Q ss_pred HhhcCCCCEEEEe
Q 014100 101 IRCLNNLRWLEVR 113 (430)
Q Consensus 101 ~~~l~~L~~L~l~ 113 (430)
+.++.+|+.+.+.
T Consensus 31 F~~~~~l~~i~~~ 43 (129)
T PF13306_consen 31 FSNCTSLKSINFP 43 (129)
T ss_dssp TTT-TT-SEEEES
T ss_pred ccccccccccccc
Confidence 3444444444443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.03 Score=45.30 Aligned_cols=82 Identities=17% Similarity=0.301 Sum_probs=45.8
Q ss_pred ccEEEeecCcCCCcCC-chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 81 LRHLVVDDCTNMLSAI-PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
+..++++.|+ +..+. ..+.+.+...|...++++| .++++ |..+...+|.++.|++++ +.+.++|..
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N-~fk~f---------p~kft~kf~t~t~lNl~~-neisdvPeE- 95 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDN-GFKKF---------PKKFTIKFPTATTLNLAN-NEISDVPEE- 95 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccc-hhhhC---------CHHHhhccchhhhhhcch-hhhhhchHH-
Confidence 3455666663 22222 1122334455666666666 45554 455556666777777765 356666554
Q ss_pred ccccCCCCccEEEEecCC
Q 014100 160 ENIIEMPELRYLAIENCP 177 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~ 177 (430)
...++.|+.|++..++
T Consensus 96 --~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 96 --LAAMPALRSLNLRFNP 111 (177)
T ss_pred --HhhhHHhhhcccccCc
Confidence 6667777777776655
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.26 Score=24.32 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=6.9
Q ss_pred CccEEEeccCCCCcccc
Q 014100 360 SLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 360 ~L~~L~l~~c~~l~~l~ 376 (430)
+|+.|++++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 55666666654 44443
|
... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.2 Score=45.06 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=18.8
Q ss_pred hhcccccEEeeccCcc--cccccCCcccCCCCCEEEEccCC
Q 014100 248 KAFANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~--l~~l~~~~~~l~~L~~L~l~~c~ 286 (430)
..+++|+++.+++... +.++ ..+..+.+|..|++..|+
T Consensus 88 e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCS 127 (260)
T ss_pred hhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCC
Confidence 4446666666665321 1222 223455556666666554
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.90 E-value=0.084 Score=47.71 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=40.6
Q ss_pred hhhhhhhhcccCCCCcceeeccccccce-----eeccCCCCCCCCCCCccEEEeecCcCCCcCC----chh------HHh
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQ-----EIWHGQALPVSFFNNLRHLVVDDCTNMLSAI----PAN------LIR 102 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~------~~~ 102 (430)
.+.+.+.+++..+..+..++++++. +. .++... .+-.+|+...+++- .++.. +.. .+-
T Consensus 17 eDvk~v~eel~~~d~~~evdLSGNt-igtEA~e~l~~~i----a~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLl 89 (388)
T COG5238 17 EDVKGVVEELEMMDELVEVDLSGNT-IGTEAMEELCNVI----ANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALL 89 (388)
T ss_pred chhhHHHHHHHhhcceeEEeccCCc-ccHHHHHHHHHHH----hhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHh
Confidence 4566677777778888888888876 32 111111 23445555555542 11111 111 245
Q ss_pred hcCCCCEEEEecCC
Q 014100 103 CLNNLRWLEVRNCD 116 (430)
Q Consensus 103 ~l~~L~~L~l~~c~ 116 (430)
+||+|+..++|+|.
T Consensus 90 kcp~l~~v~LSDNA 103 (388)
T COG5238 90 KCPRLQKVDLSDNA 103 (388)
T ss_pred cCCcceeeeccccc
Confidence 78888888888773
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=88.75 E-value=0.32 Score=25.79 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=11.4
Q ss_pred CccEEEeccCCCCccccCCC
Q 014100 360 SLEHVVVRQCPTMKIFSQGV 379 (430)
Q Consensus 360 ~L~~L~l~~c~~l~~l~~~~ 379 (430)
+|++|++++| .++.+|.++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSF 19 (22)
T ss_dssp TESEEEETSS-EESEEGTTT
T ss_pred CccEEECCCC-cCEeCChhh
Confidence 3566666666 555666553
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=86.07 E-value=0.46 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=12.2
Q ss_pred CCCccEEEeccCCCCcc
Q 014100 358 FPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 358 ~~~L~~L~l~~c~~l~~ 374 (430)
+++|++|++.+|+++++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46777777777777764
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=84.52 E-value=10 Score=30.05 Aligned_cols=13 Identities=15% Similarity=0.094 Sum_probs=4.5
Q ss_pred HhhcCCCCEEEEe
Q 014100 101 IRCLNNLRWLEVR 113 (430)
Q Consensus 101 ~~~l~~L~~L~l~ 113 (430)
+.++.+|+.+.+.
T Consensus 8 F~~~~~l~~i~~~ 20 (129)
T PF13306_consen 8 FYNCSNLESITFP 20 (129)
T ss_dssp TTT-TT--EEEET
T ss_pred HhCCCCCCEEEEC
Confidence 3344445544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-07
Identities = 61/339 (17%), Positives = 107/339 (31%), Gaps = 89/339 (26%)
Query: 31 RWEGNLNSTIQKCYEEMIG--FRDIKYLQLGHFPRLQEIWH-GQALPVSFFNNLRH---L 84
+ E S + + Y E + D + + RLQ QAL LR +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNV 153
Query: 85 VVDDCTNM---------LSAIPANLIRCLNNLR--WLEVRNCDSLEEVL-HLEEL--NAD 130
++D + L + ++C + + WL ++NC+S E VL L++L D
Sbjct: 154 LID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 131 KE-HIGPLFPKLFELTLMDL-PKLKRFCNFTENIIEMPELRYLAI----ENCPDMETFIS 184
+L + + +L+R + P L + +N F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL------LKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 185 NSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND 244
+ + +TT K+ +TD + +S H L D
Sbjct: 265 SCKILLTTRFKQ-----------VTDFLSA----------ATTTHISLDHHSMTL--TPD 301
Query: 245 ESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL-INVLTLSTSESLVNL 303
E + + Q L P EV + ++++ S + L
Sbjct: 302 EVKSLLLKYLDCRP------QDL--PR---------EVLTTNPRRLSIIAESIRDGLATW 344
Query: 304 GRMKIADCKMIEQIIQ--LQVGEEA------KGCVVFEE 334
K +C + II+ L V E A VF
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 45/270 (16%), Positives = 85/270 (31%), Gaps = 75/270 (27%)
Query: 25 VKGELRRWEG-------NLNSTIQKCYE--EMIGFRDIKYLQLGHFP--------RLQEI 67
++ L W+ L + I+ E +R + + +L FP L I
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLI 395
Query: 68 WHG--QALPVSFFNNL--RHLVVDDCTNMLSAIPA---NLIRCLNNLRWL--EVRNCDSL 118
W ++ + N L LV +IP+ L L N L + + ++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 119 EEVLHLEELNADKE------HIG------------PLFPKLFELTLMDLPKLKRFCNFTE 160
+ ++L HIG LF +F +D F E
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDF-------RFLE 504
Query: 161 NIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSE-ENFFL----------- 208
I + A + + + ++ ++ + E+L + +F
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 209 TDQIQ-PLFDEKVAFPQLRYLELSRLHKVQ 237
TD ++ L E A + E + +VQ
Sbjct: 565 TDLLRIALMAEDEAI----FEEAHK--QVQ 588
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 8e-07
Identities = 56/351 (15%), Positives = 107/351 (30%), Gaps = 57/351 (16%)
Query: 71 QALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD-------SLEEVL- 122
L + ++L L +D C+ + +++ ++ L + L E+
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189
Query: 123 ---HLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179
LE LN + PK E + L I+E+ A N +
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA-ANLEEF 248
Query: 180 ETFISNSVVHVTT---DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS----- 231
N + + + P KL ++ P+ Q+R L+L
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA--AQIRKLDLLYALLE 306
Query: 232 ---------RLHKVQHLWKEN---DESNKAFA----NLIRLKISECSKLQKLVTPSWHLE 275
+ ++ L N D + A L RL+I + Q + +
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366
Query: 276 NLATLEVSK-CHGLINVLTLS----TSESLVNLGRM-------KIADCKMIEQIIQLQ-- 321
+ +++ C L + + T+ESL ++G ++ E+I L
Sbjct: 367 QRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425
Query: 322 --VGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370
V GC L LT L P++ +++
Sbjct: 426 NGVRSLLIGCKKLRRF-AFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVG 474
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 41/347 (11%), Positives = 111/347 (31%), Gaps = 45/347 (12%)
Query: 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96
++K + ++ L G + +++ G ++ +S LR L + + A
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL--SGFWDAVPAY 280
Query: 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156
+ + L L + L + PKL L ++D +
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDL---------VKLLCQCPKLQRLWVLDYIEDAGLE 331
Query: 157 NFTENIIEMPELRYLAIENCPDME----TFISN-SVVHVTTDNKEPEKLTSEENFFLTDQ 211
+LR L + ++ +V V+ + E + +T+
Sbjct: 332 VLAST---CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNA 387
Query: 212 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271
L P + L + + + + F ++ C L++L S
Sbjct: 388 A--LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH----CKDLRRLSL-S 440
Query: 272 WHLENLATLEVSKCHGLINVLTLS----TSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327
L + + + +L+++ + + ++ C + ++ E +
Sbjct: 441 GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS----GCDSLRKL-------EIR 489
Query: 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 374
C ++ L ++ S + + ++ F + + + ++ P + +
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL-LGQKMPKLNV 535
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 49/337 (14%), Positives = 90/337 (26%), Gaps = 64/337 (18%)
Query: 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH-----------LEE 126
F N + LV+ C + A + NL+ L++R D + H L
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188
Query: 127 LN----------ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176
LN + E + P L L L L++ + P+L L
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR---APQLEELGTGGY 245
Query: 177 PDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS----- 231
S + V + + S + + ++ +L L LS
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS---VCSRLTTLNLSYATVQ 302
Query: 232 ---------RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282
+ K+Q LW + + L C L++L + +
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST----CKDLREL-----RVFPSEPFVM 353
Query: 283 SKCHGLINVLTLSTSESLVNLGRMKIADCKMI--EQIIQLQVGEEAKGCVVFEELGYLGL 340
L +S S L + C+ + +I + A+ +
Sbjct: 354 EPNVALTEQGLVSVSMGCPKL-ESVLYFCRQMTNAALITI-----ARNRPNMTRFRLCII 407
Query: 341 DCL------PSLTSFCLGNYALEFPSLEHVVVRQCPT 371
+ G L + + T
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT 444
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.89 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.88 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.88 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.88 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.87 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.87 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.87 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.87 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.87 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.87 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.87 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.87 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.86 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.86 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.86 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.86 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.85 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.85 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.85 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.85 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.84 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.84 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.84 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.84 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.84 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.82 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.82 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.82 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.81 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.81 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.81 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.81 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.8 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.8 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.79 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.79 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.78 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.78 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.78 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.77 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.76 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.76 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.75 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.75 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.74 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.74 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.73 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.73 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.72 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.72 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.71 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.71 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.7 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.69 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.69 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.69 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.68 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.68 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.67 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.66 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.66 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.66 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.65 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.63 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.63 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.63 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.62 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.62 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.62 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.62 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.6 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.54 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.53 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.52 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.52 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.51 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.51 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.5 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.5 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.5 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.49 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.49 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.46 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.45 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.44 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.43 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.43 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.37 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.36 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.35 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.32 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.3 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.29 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.27 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.25 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.25 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.23 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.22 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.2 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.2 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.14 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.1 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.09 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.09 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.07 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.07 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.01 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.0 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.0 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.99 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.98 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.95 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.95 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.93 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.92 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.91 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.89 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.85 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.77 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.76 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.76 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.69 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.69 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.68 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.68 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.66 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.63 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.59 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.59 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.57 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.55 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.49 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.41 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.36 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.32 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.32 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.31 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.28 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.28 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.21 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.09 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.0 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.95 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.9 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.87 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.82 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.75 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.63 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.56 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.86 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 96.3 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.08 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 95.84 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 95.64 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 95.31 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 85.0 |
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=191.24 Aligned_cols=299 Identities=16% Similarity=0.214 Sum_probs=213.5
Q ss_pred cccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcC
Q 014100 16 STPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSA 95 (430)
Q Consensus 16 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 95 (430)
.+++|+++.+.+ +.+..++ .+..+++|++|+++++. +..+.. ...+++|++|++++| .+...
T Consensus 42 ~l~~L~~L~l~~----------~~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~-----~~~l~~L~~L~L~~n-~i~~~ 103 (347)
T 4fmz_A 42 ELESITKLVVAG----------EKVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP-----LSNLVKLTNLYIGTN-KITDI 103 (347)
T ss_dssp HHTTCSEEECCS----------SCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCC
T ss_pred hcccccEEEEeC----------Cccccch-hhhhcCCccEEEccCCc-cccchh-----hhcCCcCCEEEccCC-cccCc
Confidence 477788888733 3334443 36678899999999875 554332 367899999999987 55553
Q ss_pred CchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEec
Q 014100 96 IPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 175 (430)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 175 (430)
+. +.++++|++|++++| .+..+ +. +..+++|+.|+++++..+..++. +..+++|++|++.+
T Consensus 104 -~~--~~~l~~L~~L~l~~n-~i~~~---------~~--~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~ 164 (347)
T 4fmz_A 104 -SA--LQNLTNLRELYLNED-NISDI---------SP--LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTE 164 (347)
T ss_dssp -GG--GTTCTTCSEEECTTS-CCCCC---------GG--GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCS
T ss_pred -hH--HcCCCcCCEEECcCC-cccCc---------hh--hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecC
Confidence 32 778999999999988 44444 22 36788999999998876665543 67888999999988
Q ss_pred CCCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcc
Q 014100 176 CPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 176 c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~ 251 (430)
|.. +..+ .++|++|++++|.+.+.. ....+++|+.|+++++ .++.... + ..++
T Consensus 165 ~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~----------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~~~ 221 (347)
T 4fmz_A 165 SKV-KDVTPIANLTDLYSLSLNYNQIEDIS----------------PLASLTSLHYFTAYVN-QITDITP--V---ANMT 221 (347)
T ss_dssp SCC-CCCGGGGGCTTCSEEECTTSCCCCCG----------------GGGGCTTCCEEECCSS-CCCCCGG--G---GGCT
T ss_pred CCc-CCchhhccCCCCCEEEccCCcccccc----------------cccCCCccceeecccC-CCCCCch--h---hcCC
Confidence 763 3332 568999999988876644 2456789999999885 5665433 3 7889
Q ss_pred cccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCccee
Q 014100 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVV 331 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 331 (430)
+|+.|++++| .+..+++ +..+++|+.|++++| .+..++ ....+++|++|++++| .+.++. ....
T Consensus 222 ~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~---------~~~~ 285 (347)
T 4fmz_A 222 RLNSLKIGNN-KITDLSP-LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSN-QISDIS---------VLNN 285 (347)
T ss_dssp TCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS-CCCCCG---------GGGG
T ss_pred cCCEEEccCC-ccCCCcc-hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCC-ccCCCh---------hhcC
Confidence 9999999987 4555544 678899999999887 455554 3577899999999887 344332 2234
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+++|+.|++.+|. ++..... ....+++|++|++++|+ ++.++. ...+++|++++++++.
T Consensus 286 l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 286 LSQLNSLFLNNNQ-LGNEDME-VIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSC-CCGGGHH-HHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CCCCCEEECcCCc-CCCcChh-HhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 7899999999874 4443321 23358999999999986 444433 5678999999997765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=188.04 Aligned_cols=305 Identities=16% Similarity=0.155 Sum_probs=217.0
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
..+++++.+.+ .++.++.+|.. +..+++|++|+++++. +..+.... ...+++|++|++++| .+.
T Consensus 42 ~~l~~l~~l~l----------~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~ 106 (390)
T 3o6n_A 42 ITLNNQKIVTF----------KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFN-AIR 106 (390)
T ss_dssp GGGCCCSEEEE----------ESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCC
T ss_pred cccCCceEEEe----------cCCchhhCChhHhcccccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCC-CCC
Confidence 45678888887 44566777766 4678999999999876 66544322 267899999999988 566
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
..++.. +.++++|++|++++| .+..+ |..++..+++|++|+++++. +..++.. .+..+++|++|++
T Consensus 107 ~~~~~~-~~~l~~L~~L~L~~n-~l~~l---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~l 172 (390)
T 3o6n_A 107 YLPPHV-FQNVPLLTVLVLERN-DLSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQL 172 (390)
T ss_dssp CCCTTT-TTTCTTCCEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTSSCTTCCEEEC
T ss_pred cCCHHH-hcCCCCCCEEECCCC-ccCcC---------CHHHhcCCCCCcEEECCCCc-cCccChh--hccCCCCCCEEEC
Confidence 655543 778999999999998 56555 56656788999999999864 4444322 1667899999999
Q ss_pred ecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhc
Q 014100 174 ENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAF 250 (430)
Q Consensus 174 ~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l 250 (430)
+++. ++.++ .++|+.|++++|.+.... ..++|+.|+++++ .++.++. ...
T Consensus 173 ~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~L~~L~l~~n-~l~~~~~------~~~ 225 (390)
T 3o6n_A 173 SSNR-LTHVDLSLIPSLFHANVSYNLLSTLA-------------------IPIAVEELDASHN-SINVVRG------PVN 225 (390)
T ss_dssp CSSC-CSBCCGGGCTTCSEEECCSSCCSEEE-------------------CCSSCSEEECCSS-CCCEEEC------CCC
T ss_pred CCCc-CCccccccccccceeecccccccccC-------------------CCCcceEEECCCC-eeeeccc------ccc
Confidence 9876 44444 568899999888765532 3468899999884 6666643 334
Q ss_pred ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcce
Q 014100 251 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV 330 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 330 (430)
++|+.|+++++. +... +.+..+++|+.|+++++. +..+... .+..+++|++|+++++. +..+. ....
T Consensus 226 ~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~--------~~~~ 292 (390)
T 3o6n_A 226 VELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNNR-LVALN--------LYGQ 292 (390)
T ss_dssp SSCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSSC-CCEEE--------CSSS
T ss_pred ccccEEECCCCC-Cccc-HHHcCCCCccEEECCCCc-CCCcChh-HccccccCCEEECCCCc-CcccC--------cccC
Confidence 789999998874 4443 456788899999998874 4444322 35678899999998863 44332 1223
Q ss_pred eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 331 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 331 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
.+++|+.|+++++ .++.++.. ...+++|++|++++|. ++.++ ...+++|+.+++++++
T Consensus 293 ~l~~L~~L~L~~n-~l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 293 PIPTLKVLDLSHN-HLLHVERN--QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCTTCCEEECCSS-CCCCCGGG--HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCCEEECCCC-cceecCcc--ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 4788999999887 56666652 3347899999998874 55555 4567899999997764
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.5e-22 Score=204.60 Aligned_cols=347 Identities=11% Similarity=0.085 Sum_probs=216.5
Q ss_pred ccccCCcccccceeeeEeecccc-------cccCcc-chhhhhhhhccc--CCCCcceeeccccccceeeccCCCCCCCC
Q 014100 8 KTFSQGIVSTPKLHEVQVKGELR-------RWEGNL-NSTIQKCYEEMI--GFRDIKYLQLGHFPRLQEIWHGQALPVSF 77 (430)
Q Consensus 8 ~~~~~~~~~~~~L~~~~~~~~~~-------~~~~~~-~~~~~~l~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 77 (430)
..+|..+..+++|+++.+.+... .|.... ......+|..+. .+++|++|+++++.-...++... ..
T Consensus 196 ~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~ 271 (636)
T 4eco_A 196 TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KA 271 (636)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TT
T ss_pred ccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH----hc
Confidence 34677788899999999965311 111100 111223888888 99999999999887444444333 67
Q ss_pred CCCccEEEeecCcCCCc-CCchhHHhhc------CCCCEEEEecCCCccEeeccccccCCcC--CCcccccccceeeccc
Q 014100 78 FNNLRHLVVDDCTNMLS-AIPANLIRCL------NNLRWLEVRNCDSLEEVLHLEELNADKE--HIGPLFPKLFELTLMD 148 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~-~~~~~~~~~l------~~L~~L~l~~c~~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~ 148 (430)
+++|++|++++|..+.. ..|.. +..+ ++|++|++++| .+..+ |. .+ ..+++|+.|++++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~i---------p~~~~l-~~l~~L~~L~L~~ 339 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTF---------PVETSL-QKMKKLGMLECLY 339 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSC---------CCHHHH-TTCTTCCEEECCS
T ss_pred CCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-cCCcc---------Cchhhh-ccCCCCCEEeCcC
Confidence 88999999998743554 33443 4444 88888888887 44444 33 22 5666777777766
Q ss_pred cccccccccCcccccCCCCccEEEEecCCCccccc-----CCc-ceEEEecCCCCCcccC------CCcceecc----Cc
Q 014100 149 LPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTDNKEPEKLTS------EENFFLTD----QI 212 (430)
Q Consensus 149 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~-L~~L~l~~~~~~~~~~------~~~l~~~~----~~ 212 (430)
+.....+| . +..+++|++|++++|. ++.+| .++ |++|++++|.+..++. +.++...+ ..
T Consensus 340 N~l~g~ip-~---~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 340 NQLEGKLP-A---FGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CCCEEECC-C---CEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CcCccchh-h---hCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC
Confidence 53222554 2 5556666666666654 33443 234 6666666666443331 01222211 00
Q ss_pred cc-cCCcCC-------CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCccc--------CCC
Q 014100 213 QP-LFDEKV-------AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH--------LEN 276 (430)
Q Consensus 213 ~~-~~~~~~-------~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------l~~ 276 (430)
.. ...... .+++|+.|+++++ .++.++...+ ..+++|+.|+++++. +..+|..... +++
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~---~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELF---STGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHH---HTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGG
T ss_pred CCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHH---ccCCCCCEEECCCCC-CCCcCHHHhccccccccccCC
Confidence 00 001122 4568999999884 6776654433 568899999999874 4477765432 228
Q ss_pred CCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC------CCceec
Q 014100 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP------SLTSFC 350 (430)
Q Consensus 277 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~~~ 350 (430)
|+.|+++++. +..++.......+++|++|+++++. +..+ +.....+++|+.|+++++. -...++
T Consensus 490 L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~i--------p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 490 LTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKF--------PTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp CCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSC--------CCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred ccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCc--------ChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 9999998874 5566643111378999999998864 3333 2233448899999996543 233444
Q ss_pred CCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 351 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 351 ~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
. ....+++|++|++++|.. +.+|..+. ++|+.+++++++.
T Consensus 560 ~--~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 560 E--GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp T--TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTT
T ss_pred H--HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCC
Confidence 4 334589999999998755 88888764 7999999988764
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-20 Score=189.14 Aligned_cols=242 Identities=17% Similarity=0.086 Sum_probs=117.1
Q ss_pred cccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCc-cc-----CC
Q 014100 135 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEK-LT-----SE 203 (430)
Q Consensus 135 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~-~~-----~~ 203 (430)
+..+++|++|+++++ .++.+|.. +..+++|++|++++|......+ .++|++|++++|.+.. .. .+
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hccccCCCEEeccCC-ccCCCChh---hcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 345566666666654 34445443 4556666666666654222111 3456666666665331 11 11
Q ss_pred Ccceecc----Ccccc---CCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCC
Q 014100 204 ENFFLTD----QIQPL---FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLE 275 (430)
Q Consensus 204 ~~l~~~~----~~~~~---~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~ 275 (430)
+++...+ ..... ....+.+++|+.|+++++ .+....+..+ ..+++|+.|+++++......++. +..++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF---KECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTT---TTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHh---cCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 1222111 00000 112344555666666553 4444444444 55566666666655333322222 44556
Q ss_pred CCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcc
Q 014100 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA 355 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 355 (430)
+|+.|++++|. +...+.. .+..+++|++|++++|......+ ........+++|+.|++++| .++.+... ..
T Consensus 426 ~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~ 496 (606)
T 3t6q_A 426 LLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGNHFPKGNI-----QKTNSLQTLGRLEILVLSFC-DLSSIDQH-AF 496 (606)
T ss_dssp TCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTCBCGGGEE-----CSSCGGGGCTTCCEEECTTS-CCCEECTT-TT
T ss_pred cCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCCCCCcccc-----ccchhhccCCCccEEECCCC-ccCccChh-hh
Confidence 66666666553 2222111 23456666666666653221111 00112233666777777765 44444321 22
Q ss_pred cCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 356 LEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 356 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
..+++|++|++++|......|..+..+++| +++++++.
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 346677777777665444445555666677 77776654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=206.17 Aligned_cols=61 Identities=11% Similarity=-0.024 Sum_probs=32.9
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
+++|+.|+++++.--..++. ....+++|++|+++++.....+|..+..+++|++++++++.
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 45555555555432223443 22235666666666655444566666666666666665543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=194.24 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=34.4
Q ss_pred hhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 38 STIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 38 ~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
+.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|++++| .+....|.. ++++++|++|++++|
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n 115 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDT---FQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQT 115 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTS
T ss_pred CccCcCChhHhccCccceEEECCCCc-cceeChhh---ccCccccCeeeCCCC-cccccChhh-hcccccccEeecccc
Confidence 333444 2345556666666666554 33221111 144556666666555 333333322 445555666666555
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=203.84 Aligned_cols=344 Identities=14% Similarity=0.085 Sum_probs=219.7
Q ss_pred ccCCcccccceeeeEeecccccc-------cCcc-chhhhhhhhccc--CCCCcceeeccccccceeeccCCCCCCCCCC
Q 014100 10 FSQGIVSTPKLHEVQVKGELRRW-------EGNL-NSTIQKCYEEMI--GFRDIKYLQLGHFPRLQEIWHGQALPVSFFN 79 (430)
Q Consensus 10 ~~~~~~~~~~L~~~~~~~~~~~~-------~~~~-~~~~~~l~~~l~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 79 (430)
+|..+..+++|+++.+.+....- .... +..-..+|..+. .+++|++|++++|.-...++... ..++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l----~~L~ 515 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL----YDLP 515 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG----GGCS
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH----hCCC
Confidence 67778889999999996532110 0000 011123788877 89999999999886444444333 6788
Q ss_pred CccEEEeecCcCCCc-CCchhHHhhc-------CCCCEEEEecCCCccEeeccccccCCcC--CCcccccccceeecccc
Q 014100 80 NLRHLVVDDCTNMLS-AIPANLIRCL-------NNLRWLEVRNCDSLEEVLHLEELNADKE--HIGPLFPKLFELTLMDL 149 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~-~~~~~~~~~l-------~~L~~L~l~~c~~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 149 (430)
+|+.|++++|..+.. ..|.. +..+ ++|++|++++| .+..+ |. .+ ..+++|+.|+++++
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N-~L~~i---------p~~~~l-~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYN-NLEEF---------PASASL-QKMVKLGLLDCVHN 583 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSS-CCCBC---------CCHHHH-TTCTTCCEEECTTS
T ss_pred CCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCC-cCCcc---------CChhhh-hcCCCCCEEECCCC
Confidence 889999988743554 23433 3344 48888888887 44444 44 33 67778888888775
Q ss_pred ccccccccCcccccCCCCccEEEEecCCCccccc-----CCc-ceEEEecCCCCCcccCC------Ccceecc----Cc-
Q 014100 150 PKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTDNKEPEKLTSE------ENFFLTD----QI- 212 (430)
Q Consensus 150 ~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~-L~~L~l~~~~~~~~~~~------~~l~~~~----~~- 212 (430)
. +..+| . +..+++|+.|++++|. ++.+| .++ |+.|++++|.+..++.. .++...+ ..
T Consensus 584 ~-l~~lp-~---~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 584 K-VRHLE-A---FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp C-CCBCC-C---CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred C-cccch-h---hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCC
Confidence 3 44555 2 6677778888887765 33444 234 77777777775543320 1122211 01
Q ss_pred ---cccCCcCC--CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCccc--------CCCCCE
Q 014100 213 ---QPLFDEKV--AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH--------LENLAT 279 (430)
Q Consensus 213 ---~~~~~~~~--~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~--------l~~L~~ 279 (430)
..+....+ ..++|+.|+++++ .++.++...+ ..+++|+.|+++++ .+..+|..... +++|+.
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred CccccchhhhccccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEECCCC-cCCccChHHhccccccccccCCccE
Confidence 11111122 2358999999885 6666544333 57789999999987 55577765443 238999
Q ss_pred EEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC------CCceecCCC
Q 014100 280 LEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP------SLTSFCLGN 353 (430)
Q Consensus 280 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~~~~~~ 353 (430)
|++++| .+..+|.......+++|+.|+++++. +..+ +.....+++|+.|++++++ -...++.
T Consensus 733 L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~l--------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-- 800 (876)
T 4ecn_A 733 IDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSF--------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-- 800 (876)
T ss_dssp EECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSC--------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--
T ss_pred EECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCcc--------chhhhcCCCCCEEECCCCCCcccccccccChH--
Confidence 999987 46666643111378999999998864 3333 2233458899999998743 2334443
Q ss_pred cccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 354 YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
....+++|++|++++|.. +.+|..+. ++|+.+++++++.
T Consensus 801 ~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 334589999999999855 88888864 6999999988763
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-20 Score=187.56 Aligned_cols=313 Identities=12% Similarity=0.186 Sum_probs=177.7
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
+..+++|+++.+ ..+.+..++. +..+++|++|+++++. +..+.. ...+++|++|++++| .+.
T Consensus 64 ~~~l~~L~~L~L----------s~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~L~~n-~l~ 125 (466)
T 1o6v_A 64 VEYLNNLTQINF----------SNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-----LANLTNLTGLTLFNN-QIT 125 (466)
T ss_dssp GGGCTTCCEEEC----------CSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCC
T ss_pred hhhhcCCCEEEC----------CCCccCCchh-hhccccCCEEECCCCc-cccChh-----hcCCCCCCEEECCCC-CCC
Confidence 334555666655 2233444443 5667777777777664 433221 256777777777776 455
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
..++ +.++++|++|++++| .+..+.. +..+++|+.|++.+ .+...+. +..+++|++|++
T Consensus 126 ~~~~---~~~l~~L~~L~l~~n-~l~~~~~-----------~~~l~~L~~L~l~~--~~~~~~~----~~~l~~L~~L~l 184 (466)
T 1o6v_A 126 DIDP---LKNLTNLNRLELSSN-TISDISA-----------LSGLTSLQQLSFGN--QVTDLKP----LANLTTLERLDI 184 (466)
T ss_dssp CCGG---GTTCTTCSEEEEEEE-EECCCGG-----------GTTCTTCSEEEEEE--SCCCCGG----GTTCTTCCEEEC
T ss_pred CChH---HcCCCCCCEEECCCC-ccCCChh-----------hccCCcccEeecCC--cccCchh----hccCCCCCEEEC
Confidence 5433 566777777777776 2333211 13444455554432 1111111 344555666666
Q ss_pred ecCCCccccc----CCcceEEEecCCCCCcccC------CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccC
Q 014100 174 ENCPDMETFI----SNSVVHVTTDNKEPEKLTS------EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN 243 (430)
Q Consensus 174 ~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 243 (430)
++|. ++.++ .++|++|++++|.+.+..+ ++.+.+.+....-......+++|+.|+++++ .++...+
T Consensus 185 ~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-- 260 (466)
T 1o6v_A 185 SSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP-- 260 (466)
T ss_dssp CSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--
T ss_pred cCCc-CCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh--
Confidence 5554 22222 3455555555555433321 1111111100000123455678888888875 5555432
Q ss_pred chhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccccc
Q 014100 244 DESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVG 323 (430)
Q Consensus 244 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 323 (430)
+ ..+++|+.|++++| .+..+++ +..+++|+.|++++|. +..++. +..+++|+.|++++|. +.++.
T Consensus 261 ~---~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~----- 325 (466)
T 1o6v_A 261 L---SGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDIS----- 325 (466)
T ss_dssp G---TTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCG-----
T ss_pred h---hcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCch-----
Confidence 3 67788888888876 3444444 5677888888888764 444443 4678888888888874 33332
Q ss_pred ccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 324 EEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 324 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
....+++|+.|++.+| .++.++ ....+++|++|++++|......| ...+++|+.+++.++.
T Consensus 326 ----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 326 ----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp ----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred ----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 1234788888888887 455553 23458889999998886544444 5678889999887764
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=207.12 Aligned_cols=336 Identities=13% Similarity=0.005 Sum_probs=199.8
Q ss_pred cccCCccc-ccceeeeEeecccccccCccchhhh-hhhhcccCCCCcceeeccccccce-eeccCCCCCCCCCCCccEEE
Q 014100 9 TFSQGIVS-TPKLHEVQVKGELRRWEGNLNSTIQ-KCYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 9 ~~~~~~~~-~~~L~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~ 85 (430)
..|..+.. +++|+++.+.+ +.+. .+|..+..+++|++|+++++. +. .++... ...+++|++|+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~----------n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~ip~~~---l~~l~~L~~L~ 349 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSG----------NHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDT---LLKMRGLKVLD 349 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCS----------SEEEECCCGGGGGCTTCCEEECCSSE-EEEECCHHH---HTTCTTCCEEE
T ss_pred ccCHHHHhhcCcCCEEECcC----------CcCCCccchHHhcCCCccEEECCCCc-ccCcCCHHH---HhcCCCCCEEe
Confidence 34555555 48999999833 3333 456677888999999999886 43 433221 25788999999
Q ss_pred eecCcCCCcCCchhHHhhcC-CCCEEEEecCCCccEeeccccccCCcCCC-cccccccceeeccccccccccccCccccc
Q 014100 86 VDDCTNMLSAIPANLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHI-GPLFPKLFELTLMDLPKLKRFCNFTENII 163 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 163 (430)
+++| .+....|.. +..++ +|++|++++|.-...+ |..+ ...+++|++|++.+|.....+|.. +.
T Consensus 350 Ls~n-~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~~---------~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~ 415 (768)
T 3rgz_A 350 LSFN-EFSGELPES-LTNLSASLLTLDLSSNNFSGPI---------LPNLCQNPKNTLQELYLQNNGFTGKIPPT---LS 415 (768)
T ss_dssp CCSS-EEEECCCTT-HHHHTTTCSEEECCSSEEEEEC---------CTTTTCSTTCCCCEEECCSSEEEEECCGG---GG
T ss_pred CcCC-ccCccccHH-HHhhhcCCcEEEccCCCcCCCc---------ChhhhhcccCCccEEECCCCccccccCHH---Hh
Confidence 9988 454334444 55566 8999999988432222 2222 112567788888776544344443 66
Q ss_pred CCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCcee
Q 014100 164 EMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 164 ~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 238 (430)
.+++|++|++++|......| .++|++|++++|.+.+..+ ...+.+++|+.|+++++ .++.
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--------------~~~~~l~~L~~L~L~~N-~l~~ 480 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP--------------QELMYVKTLETLILDFN-DLTG 480 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC--------------GGGGGCTTCCEEECCSS-CCCS
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC--------------HHHcCCCCceEEEecCC-cccC
Confidence 77777777777765332333 4567777777777554321 22345666777777664 4443
Q ss_pred ecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhh
Q 014100 239 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII 318 (430)
Q Consensus 239 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 318 (430)
..+..+ ..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|. .+..+++|+.|++++|.....+.
T Consensus 481 ~~p~~l---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 481 EIPSGL---SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCGGG---GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCC
T ss_pred cCCHHH---hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCC
Confidence 333434 5666677777776655556666666666777777766654334443 24556667777766654322211
Q ss_pred ccc--------------------------------------------------------------ccccCCcceeecccc
Q 014100 319 QLQ--------------------------------------------------------------VGEEAKGCVVFEELG 336 (430)
Q Consensus 319 ~~~--------------------------------------------------------------~~~~~~~~~~~~~L~ 336 (430)
..- .+..+.....+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 000 000011112246677
Q ss_pred eeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 337 YLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 337 ~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
.|+++++.--..++. ....+++|++|+++++.....+|..+..+++|+.++++++.
T Consensus 636 ~LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPK--EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EEECCSSCCBSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccccCCH--HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 777777643334544 22347778888887776555777777777788888876654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=198.49 Aligned_cols=324 Identities=13% Similarity=0.088 Sum_probs=217.7
Q ss_pred ccCCcc--cccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccce--eeccCCC--CCCCCCCCccE
Q 014100 10 FSQGIV--STPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQ--EIWHGQA--LPVSFFNNLRH 83 (430)
Q Consensus 10 ~~~~~~--~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~--~~~~~~~--~~~~~~~~L~~ 83 (430)
+|..+. .+++|+++.+.+. .-...+|..+..+++|++|+++++..++ .++.... .....+++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n---------~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNC---------PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECC---------TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred CchhhhhcccCCCCEEEecCC---------cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 777777 8999999999332 2234677888899999999999886344 2332220 00022489999
Q ss_pred EEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc-EeeccccccCCcCCCcccccccceeeccccccccccccCcccc
Q 014100 84 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENI 162 (430)
Q Consensus 84 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 162 (430)
|++++| .+..++....++++++|++|++++|. +. .+ | . +..+++|+.|+++++ .+..+|.. +
T Consensus 310 L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~i---------p-~-~~~l~~L~~L~L~~N-~l~~lp~~---l 372 (636)
T 4eco_A 310 IYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKL---------P-A-FGSEIKLASLNLAYN-QITEIPAN---F 372 (636)
T ss_dssp EECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEEC---------C-C-CEEEEEESEEECCSS-EEEECCTT---S
T ss_pred EECCCC-cCCccCchhhhccCCCCCEEeCcCCc-Cccch---------h-h-hCCCCCCCEEECCCC-ccccccHh---h
Confidence 999998 56665542348889999999999984 44 55 4 3 377788888888875 35566554 6
Q ss_pred cCCCC-ccEEEEecCCCccccc-------CCcceEEEecCCCCCccc------------CCCcceecc----CccccCCc
Q 014100 163 IEMPE-LRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLT------------SEENFFLTD----QIQPLFDE 218 (430)
Q Consensus 163 ~~l~~-L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~------------~~~~l~~~~----~~~~~~~~ 218 (430)
..+++ |++|+++++. ++.+| .++|+.|++++|.+.+.. ...++...+ ....+...
T Consensus 373 ~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 373 CGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp EEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred hhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence 67777 8888888776 44555 126888888888765422 112333221 11222222
Q ss_pred -CCCCCCCcEEecccCCCceeecccCchhh----hhcccccEEeeccCcccccccCCcc--cCCCCCEEEEccCCCcccc
Q 014100 219 -KVAFPQLRYLELSRLHKVQHLWKENDESN----KAFANLIRLKISECSKLQKLVTPSW--HLENLATLEVSKCHGLINV 291 (430)
Q Consensus 219 -~~~~~~L~~L~L~~~~~l~~~~~~~~~~~----~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~l~~c~~l~~~ 291 (430)
...+++|+.|+++++ .++.++...+... ..+++|+.|+++++ .++.+|..+. .+++|+.|+++++. +..+
T Consensus 452 ~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~i 528 (636)
T 4eco_A 452 LFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNS-FSKF 528 (636)
T ss_dssp HHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSC-CSSC
T ss_pred HHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCC-CCCc
Confidence 224789999999985 7777665544110 12339999999997 4558887776 89999999999875 5556
Q ss_pred ccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 014100 292 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 371 (430)
Q Consensus 292 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 371 (430)
|. .+..+++|+.|+++++..+..--. .+..+.....+++|+.|+++++. ++.++... +++|++|++++|+.
T Consensus 529 p~--~~~~l~~L~~L~Ls~N~~ls~N~l--~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~----~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 529 PT--QPLNSSTLKGFGIRNQRDAQGNRT--LREWPEGITLCPSLTQLQIGSND-IRKVNEKI----TPNISVLDIKDNPN 599 (636)
T ss_dssp CC--GGGGCSSCCEEECCSCBCTTCCBC--CCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC----CTTCCEEECCSCTT
T ss_pred Ch--hhhcCCCCCEEECCCCcccccCcc--cccChHHHhcCCCCCEEECCCCc-CCccCHhH----hCcCCEEECcCCCC
Confidence 54 356899999999976542111000 02233344558999999999974 58887643 48999999999865
Q ss_pred C
Q 014100 372 M 372 (430)
Q Consensus 372 l 372 (430)
.
T Consensus 600 ~ 600 (636)
T 4eco_A 600 I 600 (636)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=188.50 Aligned_cols=305 Identities=16% Similarity=0.157 Sum_probs=215.6
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+..+|..+ .+++++|+++++. +..+.... ...+++|++|++++| .+....+.. +.++++|++|++++| .
T Consensus 21 ~~l~~ip~~~--~~~l~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 21 KRFVAVPEGI--PTETRLLDLGKNR-IKTLNQDE---FASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp CCCSSCCSCC--CTTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred CCcCcCCCCC--CCCCcEEECCCCc-cceECHhH---ccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-c
Confidence 4455666654 3578899998776 66543221 257888999999887 566654443 778889999999887 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ |...+..+++|++|+++++. +..+... .+..+++|++|++.++. ++.++ .++|++|+
T Consensus 92 l~~~---------~~~~~~~l~~L~~L~Ls~n~-i~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 92 LKLI---------PLGVFTGLSNLTKLDISENK-IVILLDY--MFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CCSC---------CTTSSTTCTTCCEEECTTSC-CCEECTT--TTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEE
T ss_pred CCcc---------CcccccCCCCCCEEECCCCc-cccCChh--HccccccCCEEECCCCc-cceeChhhccCCCCCCEEE
Confidence 5555 55555788899999998764 4443221 15678889999998875 33332 46888999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
+++|.+.++.. .....+++|+.|+++++ .+..+....+ ..+++|+.|++++|..+..+++..
T Consensus 159 l~~n~l~~~~~--------------~~l~~l~~L~~L~l~~n-~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~ 220 (477)
T 2id5_A 159 LEKCNLTSIPT--------------EALSHLHGLIVLRLRHL-NINAIRDYSF---KRLYRLKVLEISHWPYLDTMTPNC 220 (477)
T ss_dssp EESCCCSSCCH--------------HHHTTCTTCCEEEEESC-CCCEECTTCS---CSCTTCCEEEEECCTTCCEECTTT
T ss_pred CCCCcCcccCh--------------hHhcccCCCcEEeCCCC-cCcEeChhhc---ccCcccceeeCCCCccccccCccc
Confidence 98888765441 12456789999999984 6777766666 788999999999998888888777
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecC
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 351 (430)
....+|+.|++++|. ++.++.. .+..+++|++|+++++. +..+.. .....+++|+.|++.++ .++.+..
T Consensus 221 ~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~ 289 (477)
T 2id5_A 221 LYGLNLTSLSITHCN-LTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGG-QLAVVEP 289 (477)
T ss_dssp TTTCCCSEEEEESSC-CCSCCHH-HHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSS-CCSEECT
T ss_pred ccCccccEEECcCCc-ccccCHH-HhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCC-ccceECH
Confidence 777799999998874 6665532 35678999999998864 443321 12233788999999886 5666643
Q ss_pred CCcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEecccCCC
Q 014100 352 GNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~~~~ 395 (430)
. ....+++|++|+++++ .++.++.. +..+++|+.+++.+++.
T Consensus 290 ~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 290 Y-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp T-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred H-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCCc
Confidence 2 2345889999999887 55566654 45778999999977653
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-20 Score=193.01 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=87.7
Q ss_pred CCCCCCcEEecccCCCceeecc-cCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccc-ccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN-VLTLSTS 297 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~ 297 (430)
..+++|+.|+++++ .+....+ ..+ ..+++|+.|++++|......|..+..+++|+.|++++|..... ++. .+
T Consensus 396 ~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~ 469 (606)
T 3vq2_A 396 MGLEELQHLDFQHS-TLKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--VF 469 (606)
T ss_dssp TTCTTCCEEECTTS-EEESTTTTTTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--CC
T ss_pred cCCCCCCeeECCCC-ccCCccChhhh---hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--hh
Confidence 33445555555543 3333222 222 4555666666665544444444455566666666665532221 221 24
Q ss_pred ccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccC
Q 014100 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 377 (430)
..+++|++|++++|. +..+. +.....+++|+.|+++++ .++.+... ....+++|++|++++|. ++.+|.
T Consensus 470 ~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~ 538 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQ-LEQIS-------WGVFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKG 538 (606)
T ss_dssp TTCTTCCEEECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEES
T ss_pred ccCCCCCEEECCCCc-CCccC-------hhhhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCH
Confidence 556666666666653 22221 112233677888888876 44444221 23347888888888874 667887
Q ss_pred CCcCCC-CceEEecccCCC
Q 014100 378 GVVDAP-KLNKVKPTEEED 395 (430)
Q Consensus 378 ~~~~~~-~L~~l~l~~~~~ 395 (430)
.+..++ +|+++++.+++.
T Consensus 539 ~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp CGGGSCTTCCEEECCSCCC
T ss_pred hHhhhcccCcEEEccCCCc
Confidence 776666 588888877654
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.7e-20 Score=190.54 Aligned_cols=63 Identities=13% Similarity=0.038 Sum_probs=43.2
Q ss_pred eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 331 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 331 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
.+++|+.|++++| .++.+... ....+++|++|++++|......|..+..+++|++++++++..
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred cCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 3677888888776 45555432 233478888888888755544566777788888888877653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-20 Score=191.83 Aligned_cols=300 Identities=16% Similarity=0.185 Sum_probs=166.8
Q ss_pred cccceeeeEeecccccccCccchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCc
Q 014100 16 STPKLHEVQVKGELRRWEGNLNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS 94 (430)
Q Consensus 16 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 94 (430)
.+.+++.+.+ .++.+..+|.. +..+++|++|+++++. +..+.... ...+++|++|++++| .+..
T Consensus 49 ~l~~l~~l~l----------~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~ 113 (597)
T 3oja_B 49 TLNNQKIVTF----------KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFN-AIRY 113 (597)
T ss_dssp GGCCCSEEEE----------SSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCC
T ss_pred cCCCceEEEe----------eCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHH---hcCCCCCCEEECCCC-cCCC
Confidence 3456666666 33556666655 4568889999998876 66544321 257888999999887 4666
Q ss_pred CCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEe
Q 014100 95 AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIE 174 (430)
Q Consensus 95 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 174 (430)
+++. .++++++|++|++++| .+..+ |..++..+++|++|+++++. +..++.. .+..+++|++|+++
T Consensus 114 ~~~~-~~~~l~~L~~L~L~~n-~l~~l---------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 114 LPPH-VFQNVPLLTVLVLERN-DLSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQLS 179 (597)
T ss_dssp CCTT-TTTTCTTCCEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTTTCTTCCEEECT
T ss_pred CCHH-HHcCCCCCCEEEeeCC-CCCCC---------CHHHhccCCCCCEEEeeCCc-CCCCChh--hhhcCCcCcEEECc
Confidence 5543 3678899999999888 55555 55555788888888888864 4444322 15678888888888
Q ss_pred cCCCccccc---CCcceEEEecCCCCCcccC---CCcceeccC-ccccCCcCCCCCCCcEEecccCCCceeecccCchhh
Q 014100 175 NCPDMETFI---SNSVVHVTTDNKEPEKLTS---EENFFLTDQ-IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN 247 (430)
Q Consensus 175 ~c~~l~~~~---~~~L~~L~l~~~~~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 247 (430)
+|. ++.++ .++|+.|++++|.+.++.. ++.+.+.+. ...+ . ....++|+.|+++++ .++.. ..+
T Consensus 180 ~N~-l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~-~-~~~~~~L~~L~L~~n-~l~~~--~~l--- 250 (597)
T 3oja_B 180 SNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-R-GPVNVELTILKLQHN-NLTDT--AWL--- 250 (597)
T ss_dssp TSC-CSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEE-E-CSCCSCCCEEECCSS-CCCCC--GGG---
T ss_pred CCC-CCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccc-c-cccCCCCCEEECCCC-CCCCC--hhh---
Confidence 875 44444 5677788887776554321 111111000 0000 0 112245555555553 33332 112
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
..+++|+.|+++++......|..+..+++|+.|+++++ .+..++. ....+++|+.|++++|. +..+. .
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N~-l~~i~--------~ 318 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVE--------R 318 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCG--------G
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCCC-CCccC--------c
Confidence 45555666666555333333444455556666666554 2333332 22345556666665542 22221 1
Q ss_pred cceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 014100 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
....+++|+.|++.++ .++.++.+ .+++|++|++++++
T Consensus 319 ~~~~l~~L~~L~L~~N-~l~~~~~~----~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 NQPQFDRLENLYLDHN-SIVTLKLS----THHTLKNLTLSHND 356 (597)
T ss_dssp GHHHHTTCSEEECCSS-CCCCCCCC----TTCCCSEEECCSSC
T ss_pred ccccCCCCCEEECCCC-CCCCcChh----hcCCCCEEEeeCCC
Confidence 1223555666666554 24444321 25556666665543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-20 Score=185.12 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=118.0
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccc--cccCCcccCCCCCEEEEccCCCccc-cccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLIN-VLTLST 296 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~ 296 (430)
..+++|++|+++++ .++...+..+ ..+++|+.|++++|.... .+|..+..+++|+.|+++++. +.. ++.. .
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~-~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFENC---GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKG-D 394 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGC-S
T ss_pred hhCCcccEEEeECC-ccChhhhhhh---ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccc-h
Confidence 57889999999985 6666445555 788999999999975443 455567789999999999875 444 5543 2
Q ss_pred cccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcccc
Q 014100 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 376 (430)
+..+++|++|++++|.....++. . ..++|+.|+++++ .++.++... ..+++|++|++++| .++.+|
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~--------~--l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFR--------C--LPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGG--------S--CCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCC
T ss_pred hccCccCCEEECcCCCCCcchhh--------h--hcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCccC
Confidence 46789999999999854333321 1 1279999999997 677777633 36999999999997 667888
Q ss_pred CC-CcCCCCceEEecccCCC
Q 014100 377 QG-VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 377 ~~-~~~~~~L~~l~l~~~~~ 395 (430)
.. +..+++|+++++++++.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCB
T ss_pred HHHhccCCcccEEECcCCCC
Confidence 87 67889999999977653
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-20 Score=181.88 Aligned_cols=332 Identities=13% Similarity=0.102 Sum_probs=198.9
Q ss_pred cceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++|+++.+ ..+.+..+ +..+..+++|++|+++++.-...+... ....+++|++|++++| .+....
T Consensus 30 ~~l~~L~L----------s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~---~~~~l~~L~~L~Ls~n-~l~~~~ 95 (455)
T 3v47_A 30 AHVNYVDL----------SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN---TFRGLSSLIILKLDYN-QFLQLE 95 (455)
T ss_dssp TTCCEEEC----------CSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT---TTTTCTTCCEEECTTC-TTCEEC
T ss_pred CccCEEEe----------cCCccCcCChhHhccCccccEEECcCCcccceECcc---cccccccCCEEeCCCC-ccCccC
Confidence 56777777 33444454 455677888888888877532232211 1256778888888876 455544
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+.. +.++++|++|++++|. +..... +...+..+++|++|+++++. +..+..... +..+++|++|+++++
T Consensus 96 ~~~-~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 96 TGA-FNGLANLEVLTLTQCN-LDGAVL-------SGNFFKPLTSLEMLVLRDNN-IKKIQPASF-FLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTT-TTTCTTCCEEECTTSC-CBTHHH-------HSSTTTTCTTCCEEECCSSB-CCSCCCCGG-GGGCTTCCEEECTTC
T ss_pred hhh-ccCcccCCEEeCCCCC-CCcccc-------CcccccCcccCCEEECCCCc-cCccCcccc-cCCCCcccEEeCCCC
Confidence 433 6678888888888773 322100 12223667788888887754 443322111 456778888888776
Q ss_pred CCccccc-------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeec---------
Q 014100 177 PDMETFI-------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW--------- 240 (430)
Q Consensus 177 ~~l~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--------- 240 (430)
......+ ..+++.|+++++.+........- .........+++|+.|+++++ .++...
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~------~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG------WEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIA 237 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT------HHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTT
T ss_pred cccccChhhhhccccccccccccccCcccccchhhcc------ccccccccccceeeeEecCCC-cccccchhhhhcccc
Confidence 5322211 24566777777665443210000 000001122345555555553 221111
Q ss_pred ----------------------------ccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccc
Q 014100 241 ----------------------------KENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292 (430)
Q Consensus 241 ----------------------------~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~ 292 (430)
...+.. ...++|+.|+++++......+..+..+++|+.|+++++. +..++
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~ 315 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKID 315 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEEC
T ss_pred ccceeeEeeccccccccccchhhhccCccccccc-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccC
Confidence 111100 123688999998876655566677889999999999875 55443
Q ss_pred cccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCC
Q 014100 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTM 372 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 372 (430)
.. .+..+++|++|++++|. +..+. +.....+++|+.|+++++ .++.+... ....+++|++|+++++ .+
T Consensus 316 ~~-~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l 383 (455)
T 3v47_A 316 DN-AFWGLTHLLKLNLSQNF-LGSID-------SRMFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QL 383 (455)
T ss_dssp TT-TTTTCTTCCEEECCSSC-CCEEC-------GGGGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CC
T ss_pred hh-HhcCcccCCEEECCCCc-cCCcC-------hhHhcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-cc
Confidence 32 35678999999999874 34332 112234889999999997 56666432 2345899999999986 56
Q ss_pred ccccCC-CcCCCCceEEecccCCC
Q 014100 373 KIFSQG-VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 373 ~~l~~~-~~~~~~L~~l~l~~~~~ 395 (430)
+.+|.. +..+++|+++++++++.
T Consensus 384 ~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 384 KSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCHhHhccCCcccEEEccCCCc
Confidence 667765 46889999999977653
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-20 Score=177.79 Aligned_cols=279 Identities=12% Similarity=0.159 Sum_probs=214.4
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccc
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 127 (430)
..+++|++|+++++. +..+. + ...+++|++|++++| .+...++ +.++++|++|++++| .+..+
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~-~----~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~------ 103 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQ-G----IEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDI------ 103 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCT-T----GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC------
T ss_pred hhcccccEEEEeCCc-cccch-h----hhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCc------
Confidence 367889999999876 55432 1 257999999999998 5666544 778999999999998 55544
Q ss_pred cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCcccCC
Q 014100 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 128 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~ 203 (430)
+ . +..+++|++|+++++. +..++. ...+++|++|++++|.....++ .++|++|++++|.+....
T Consensus 104 ---~-~-~~~l~~L~~L~l~~n~-i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-- 171 (347)
T 4fmz_A 104 ---S-A-LQNLTNLRELYLNEDN-ISDISP----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-- 171 (347)
T ss_dssp ---G-G-GTTCTTCSEEECTTSC-CCCCGG----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG--
T ss_pred ---h-H-HcCCCcCCEEECcCCc-ccCchh----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch--
Confidence 2 1 4788999999999864 555543 6789999999999998777665 578999999999876644
Q ss_pred CcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEc
Q 014100 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 283 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 283 (430)
....+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .+..+++ +..+++|+.|+++
T Consensus 172 --------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 172 --------------PIANLTDLYSLSLNYN-QIEDISP--L---ASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIG 229 (347)
T ss_dssp --------------GGGGCTTCSEEECTTS-CCCCCGG--G---GGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECC
T ss_pred --------------hhccCCCCCEEEccCC-ccccccc--c---cCCCccceeecccC-CCCCCch-hhcCCcCCEEEcc
Confidence 2467899999999986 6666543 3 88899999999997 4444443 6788999999999
Q ss_pred cCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccE
Q 014100 284 KCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 363 (430)
Q Consensus 284 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~ 363 (430)
+|. +..++. ...+++|++|++++|. +.++. ....+++|+.|++++| .+++++ ....+++|++
T Consensus 230 ~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~ 291 (347)
T 4fmz_A 230 NNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDIN---------AVKDLTKLKMLNVGSN-QISDIS---VLNNLSQLNS 291 (347)
T ss_dssp SSC-CCCCGG---GTTCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTCSE
T ss_pred CCc-cCCCcc---hhcCCCCCEEECCCCc-cCCCh---------hHhcCCCcCEEEccCC-ccCCCh---hhcCCCCCCE
Confidence 874 555543 5789999999999873 44331 2234889999999997 566664 2345899999
Q ss_pred EEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 364 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 364 L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
|++++|......+..+..+++|++++++++..
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 99999965555555567789999999988864
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-20 Score=186.22 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=87.1
Q ss_pred CCCCcEEecccCCCceeecc---cCchhhhhcccccEEeeccCccccccc---CCcccCCCCCEEEEccCCCcccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWK---ENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLTLS 295 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~~~~~~ 295 (430)
+++|+.|+++++ .+....+ ..+ ..+++|+.|++++| .++.++ ..+..+++|+.|++++| .++.+|.
T Consensus 333 l~~L~~L~Ls~N-~l~~~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-- 404 (549)
T 2z81_A 333 LKSLEFLDLSEN-LMVEEYLKNSACK---GAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD-- 404 (549)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHTCT---TSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--
T ss_pred CccccEEEccCC-ccccccccchhhh---hccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCCh--
Confidence 566667776664 3333211 112 44566666666665 333332 12445566666666655 3444443
Q ss_pred ccccccCccEEEEcccccchhhhcccc----------cccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEE
Q 014100 296 TSESLVNLGRMKIADCKMIEQIIQLQV----------GEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV 365 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~----------~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 365 (430)
.+..+++|++|++++|. +..+..... -........+++|+.|+++++ +++.++.. ..+++|++|+
T Consensus 405 ~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~ 479 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMK 479 (549)
T ss_dssp CCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEE
T ss_pred hhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEe
Confidence 23445556666655543 221110000 000000123778888888886 56677642 2378999999
Q ss_pred eccCCCCccccC-CCcCCCCceEEecccCC
Q 014100 366 VRQCPTMKIFSQ-GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 366 l~~c~~l~~l~~-~~~~~~~L~~l~l~~~~ 394 (430)
++++ .++.++. .+..+++|+.+++++++
T Consensus 480 Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 480 ISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 9887 4445544 46778999999997776
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=180.03 Aligned_cols=291 Identities=14% Similarity=0.148 Sum_probs=216.1
Q ss_pred ccccCC-cccccceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 8 KTFSQG-IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 8 ~~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
+.++.. +..+++|+++.+ .++.+..++. .+..+++|++|+++++. +..+... ....+++|++|+
T Consensus 58 ~~l~~~~~~~l~~L~~L~L----------~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~ 123 (390)
T 3o6n_A 58 RKLPAALLDSFRQVELLNL----------NDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH---VFQNVPLLTVLV 123 (390)
T ss_dssp SEECTHHHHHCCCCSEEEC----------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCTTCCEEE
T ss_pred hhCChhHhcccccCcEEEC----------CCCcccccChhhccCCCCcCEEECCCCC-CCcCCHH---HhcCCCCCCEEE
Confidence 344444 355889999998 3345556654 57789999999999886 5543322 126789999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
+++| .+..++ ...+.++++|++|++++| .+..+ +...+..+++|++|+++++ .++.++ ...+
T Consensus 124 L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~l 185 (390)
T 3o6n_A 124 LERN-DLSSLP-RGIFHNTPKLTTLSMSNN-NLERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLI 185 (390)
T ss_dssp CCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCBC---------CTTTTSSCTTCCEEECCSS-CCSBCC-----GGGC
T ss_pred CCCC-ccCcCC-HHHhcCCCCCcEEECCCC-ccCcc---------ChhhccCCCCCCEEECCCC-cCCccc-----cccc
Confidence 9998 566644 444678999999999998 45444 3333488999999999986 354442 6778
Q ss_pred CCccEEEEecCCCccccc-CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCc
Q 014100 166 PELRYLAIENCPDMETFI-SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND 244 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 244 (430)
++|+.|+++++. ++.++ +.++++|++++|.+.... ...+++|+.|+++++ .++.. ..+
T Consensus 186 ~~L~~L~l~~n~-l~~~~~~~~L~~L~l~~n~l~~~~-----------------~~~~~~L~~L~l~~n-~l~~~--~~l 244 (390)
T 3o6n_A 186 PSLFHANVSYNL-LSTLAIPIAVEELDASHNSINVVR-----------------GPVNVELTILKLQHN-NLTDT--AWL 244 (390)
T ss_dssp TTCSEEECCSSC-CSEEECCSSCSEEECCSSCCCEEE-----------------CCCCSSCCEEECCSS-CCCCC--GGG
T ss_pred cccceeeccccc-ccccCCCCcceEEECCCCeeeecc-----------------ccccccccEEECCCC-CCccc--HHH
Confidence 999999999875 55544 779999999999877654 244689999999985 66654 233
Q ss_pred hhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccc
Q 014100 245 ESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGE 324 (430)
Q Consensus 245 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 324 (430)
..+++|+.|+++++......|..+..+++|+.|+++++ .++.++. ....+++|++|++++|. +..+.
T Consensus 245 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n~-l~~~~------ 311 (390)
T 3o6n_A 245 ---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVE------ 311 (390)
T ss_dssp ---GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCG------
T ss_pred ---cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCCc-ceecC------
Confidence 88899999999998554444667778999999999986 4666654 24678999999999974 44432
Q ss_pred cCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCC
Q 014100 325 EAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT 371 (430)
Q Consensus 325 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 371 (430)
.....+++|+.|++.++ .++.++.. .+++|++|++++++-
T Consensus 312 --~~~~~l~~L~~L~L~~N-~i~~~~~~----~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 312 --RNQPQFDRLENLYLDHN-SIVTLKLS----THHTLKNLTLSHNDW 351 (390)
T ss_dssp --GGHHHHTTCSEEECCSS-CCCCCCCC----TTCCCSEEECCSSCE
T ss_pred --ccccccCcCCEEECCCC-ccceeCch----hhccCCEEEcCCCCc
Confidence 12334899999999987 46666543 389999999998753
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-20 Score=182.39 Aligned_cols=295 Identities=14% Similarity=0.089 Sum_probs=200.6
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
+..+++|+++.+. ++.+..+| .+..+++|++|+++++. +..++ ...+++|++|++++| .+.
T Consensus 38 ~~~l~~L~~L~Ls----------~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~------~~~l~~L~~L~Ls~N-~l~ 98 (457)
T 3bz5_A 38 EEQLATLTSLDCH----------NSSITDMT-GIEKLTGLTKLICTSNN-ITTLD------LSQNTNLTYLACDSN-KLT 98 (457)
T ss_dssp HHHHTTCCEEECC----------SSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC------CTTCTTCSEEECCSS-CCS
T ss_pred hhHcCCCCEEEcc----------CCCcccCh-hhcccCCCCEEEccCCc-CCeEc------cccCCCCCEEECcCC-CCc
Confidence 4457888988883 34445554 57789999999999886 66532 367899999999998 466
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.. + +.++++|++|++++| .+..+ + +..+++|++|+++++ .++.++ +..+++|++|++
T Consensus 99 ~~-~---~~~l~~L~~L~L~~N-~l~~l---------~---~~~l~~L~~L~l~~N-~l~~l~-----l~~l~~L~~L~l 155 (457)
T 3bz5_A 99 NL-D---VTPLTKLTYLNCDTN-KLTKL---------D---VSQNPLLTYLNCARN-TLTEID-----VSHNTQLTELDC 155 (457)
T ss_dssp CC-C---CTTCTTCCEEECCSS-CCSCC---------C---CTTCTTCCEEECTTS-CCSCCC-----CTTCTTCCEEEC
T ss_pred ee-e---cCCCCcCCEEECCCC-cCCee---------c---CCCCCcCCEEECCCC-ccceec-----cccCCcCCEEEC
Confidence 64 3 567999999999998 45444 2 377899999999886 355442 677899999999
Q ss_pred ecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhc
Q 014100 174 ENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAF 250 (430)
Q Consensus 174 ~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l 250 (430)
++|..+..++ .++|+.|++++|.+.++. .+.+++|+.|+++++ .++.+ .+ ..+
T Consensus 156 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-----------------l~~l~~L~~L~l~~N-~l~~~---~l---~~l 211 (457)
T 3bz5_A 156 HLNKKITKLDVTPQTQLTTLDCSFNKITELD-----------------VSQNKLLNRLNCDTN-NITKL---DL---NQN 211 (457)
T ss_dssp TTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-----------------CTTCTTCCEEECCSS-CCSCC---CC---TTC
T ss_pred CCCCcccccccccCCcCCEEECCCCccceec-----------------cccCCCCCEEECcCC-cCCee---cc---ccC
Confidence 9987666654 568999999999876643 456778888888874 56554 23 677
Q ss_pred ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEc----------ccccchhhhcc
Q 014100 251 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA----------DCKMIEQIIQL 320 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~----------~c~~l~~~~~~ 320 (430)
++|+.|+++++ .++.+| +..+++|+.|+++++. ++.++ ...+++|+.|+++ +|..+..+.
T Consensus 212 ~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-- 281 (457)
T 3bz5_A 212 IQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-- 281 (457)
T ss_dssp TTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred CCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence 88888888886 455565 5677888888888763 55444 2345555555443 333222221
Q ss_pred cccccCCcceeecccceeecccCCCCceecCCC------cccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 321 QVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN------YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 321 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~------~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
...+++|+.|++++|+.+..++... ....+++|++|+++++ +++.++ +..+++|+.++++++.
T Consensus 282 --------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 282 --------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp --------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred --------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence 1226788888888887665554311 1123566777777654 344443 5567888888887655
Q ss_pred C
Q 014100 395 D 395 (430)
Q Consensus 395 ~ 395 (430)
.
T Consensus 351 l 351 (457)
T 3bz5_A 351 I 351 (457)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-20 Score=194.47 Aligned_cols=321 Identities=13% Similarity=0.118 Sum_probs=199.8
Q ss_pred hhhhhhhcccCCCCcceeecccccccee------------------eccCCCCCCC--CCCCccEEEeecCcCCCcCCch
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQE------------------IWHGQALPVS--FFNNLRHLVVDDCTNMLSAIPA 98 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~ 98 (430)
.+..+|..+..+++|++|+++++. +.. ++... . .+++|++|++++|..... .|.
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~~L~~L~~L~Ls~N~l~~~-iP~ 509 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQ-LPD 509 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEESCTTCCS-CCG
T ss_pred cccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhh----hhccCCCCCEEECcCCCCCcc-ChH
Confidence 444488889999999999999887 554 33222 4 789999999999854444 443
Q ss_pred hHHhhcCCCCEEEEecCCCccE--eeccccccCCcCCC------cccccccceeecccccccccccc--CcccccCCCCc
Q 014100 99 NLIRCLNNLRWLEVRNCDSLEE--VLHLEELNADKEHI------GPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPEL 168 (430)
Q Consensus 99 ~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~------~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~l~~L 168 (430)
. +.++++|++|++++|..+.. + |..+ +..+++|+.|+++++. +..+|. . +..+++|
T Consensus 510 ~-l~~L~~L~~L~Ls~N~~lsg~~i---------P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~---l~~L~~L 575 (876)
T 4ecn_A 510 F-LYDLPELQSLNIACNRGISAAQL---------KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS---LQKMVKL 575 (876)
T ss_dssp G-GGGCSSCCEEECTTCTTSCHHHH---------HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH---HTTCTTC
T ss_pred H-HhCCCCCCEEECcCCCCcccccc---------hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh---hhcCCCC
Confidence 3 78999999999999963543 3 2221 2455699999999864 557765 4 7889999
Q ss_pred cEEEEecCCCccccc----CCcceEEEecCCCCCcccC----CCc-ceec---c-CccccCCcCCCC--CCCcEEecccC
Q 014100 169 RYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS----EEN-FFLT---D-QIQPLFDEKVAF--PQLRYLELSRL 233 (430)
Q Consensus 169 ~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~----~~~-l~~~---~-~~~~~~~~~~~~--~~L~~L~L~~~ 233 (430)
+.|++++|. ++.+| .++|+.|++++|.+..++. +.+ +..+ + ....+....... ++|+.|+++++
T Consensus 576 ~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 576 GLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSS
T ss_pred CEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCC
Confidence 999999986 44665 5689999999998764441 111 2211 1 111111111222 23566666553
Q ss_pred CCceeecccCchhhh--hcccccEEeeccCcccccccCCcc-cCCCCCEEEEccCCCccccccccc------cccccCcc
Q 014100 234 HKVQHLWKENDESNK--AFANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLST------SESLVNLG 304 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~------~~~l~~L~ 304 (430)
.+....+....... .+++|+.|++++| .+..+|..+. .+++|+.|+++++ .+..++...+ ..++++|+
T Consensus 655 -~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~ 731 (876)
T 4ecn_A 655 -KIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLT 731 (876)
T ss_dssp -CTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred -cCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCcc
Confidence 33221111000001 2346777777665 3335554433 5677777777765 3445543211 11234788
Q ss_pred EEEEcccccchhhhcccccccCCcce--eecccceeecccCCCCceecCCCcccCCCCccEEEecc------CCCCcccc
Q 014100 305 RMKIADCKMIEQIIQLQVGEEAKGCV--VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTMKIFS 376 (430)
Q Consensus 305 ~L~l~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~------c~~l~~l~ 376 (430)
.|++++| .+..+. .... .+++|+.|+++++ .++.++. ....+++|++|++++ |.....+|
T Consensus 732 ~L~Ls~N-~L~~lp--------~~l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 732 TIDLRFN-KLTSLS--------DDFRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp EEECCSS-CCCCCC--------GGGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred EEECCCC-CCccch--------HHhhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccCh
Confidence 8888776 333332 1222 4778888888875 4555654 234588888888865 44455677
Q ss_pred CCCcCCCCceEEecccCCC
Q 014100 377 QGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 377 ~~~~~~~~L~~l~l~~~~~ 395 (430)
..+..+++|+.|+++++..
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTGGGCSSCCEEECCSSCC
T ss_pred HHHhcCCCCCEEECCCCCC
Confidence 7777888888888888765
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=183.72 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=94.4
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-CCcccCCCCCEEEEccCCCcccccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 299 (430)
.+++|+.|+++++ .+..++.. + ..+++|++|++++|......+ ..+..+++|+.|++++|......+. .+..
T Consensus 371 ~~~~L~~L~l~~n-~l~~~~~~-~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~ 443 (570)
T 2z63_A 371 GTTSLKYLDLSFN-GVITMSSN-F---LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNG 443 (570)
T ss_dssp TCSCCCEEECCSC-SEEEEEEE-E---ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT--TTTT
T ss_pred ccCccCEEECCCC-cccccccc-c---cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh--hhhc
Confidence 3455555555553 34443332 3 555666666666653332222 2345667777777777643322222 3456
Q ss_pred ccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcccc-CC
Q 014100 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QG 378 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~ 378 (430)
+++|++|++++|...... .+.....+++|+.|++++| .++.+... ....+++|++|++++| .++.++ ..
T Consensus 444 l~~L~~L~l~~n~l~~~~-------~p~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~ 513 (570)
T 2z63_A 444 LSSLEVLKMAGNSFQENF-------LPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGI 513 (570)
T ss_dssp CTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CCcCcEEECcCCcCcccc-------chhhhhcccCCCEEECCCC-ccccCChh-hhhcccCCCEEeCCCC-cCCCCCHHH
Confidence 778888888776532111 1123334788999999987 46665332 2345899999999987 455555 44
Q ss_pred CcCCCCceEEecccCC
Q 014100 379 VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 379 ~~~~~~L~~l~l~~~~ 394 (430)
+..+++|+.+++++++
T Consensus 514 ~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hhcccCCcEEEecCCc
Confidence 6788999999997765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=179.62 Aligned_cols=311 Identities=13% Similarity=0.191 Sum_probs=212.2
Q ss_pred ccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
+++|+++.+ ..+.++.++ .+..+++|++|+++++. +..+.. ...+++|++|++++| .+...+
T Consensus 45 l~~l~~L~l----------~~~~i~~l~-~~~~l~~L~~L~Ls~n~-l~~~~~-----~~~l~~L~~L~l~~n-~l~~~~ 106 (466)
T 1o6v_A 45 LDQVTTLQA----------DRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITP-----LKNLTKLVDILMNNN-QIADIT 106 (466)
T ss_dssp HHTCCEEEC----------CSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCG
T ss_pred hccccEEec----------CCCCCccCc-chhhhcCCCEEECCCCc-cCCchh-----hhccccCCEEECCCC-ccccCh
Confidence 567888887 334445554 36779999999999886 665432 368999999999998 556544
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+ +.++++|++|++++| .+..+ +. +..+++|++|+++++. +..++. +..+++|+.|++.++
T Consensus 107 ~---~~~l~~L~~L~L~~n-~l~~~---------~~--~~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~~ 166 (466)
T 1o6v_A 107 P---LANLTNLTGLTLFNN-QITDI---------DP--LKNLTNLNRLELSSNT-ISDISA----LSGLTSLQQLSFGNQ 166 (466)
T ss_dssp G---GTTCTTCCEEECCSS-CCCCC---------GG--GTTCTTCSEEEEEEEE-ECCCGG----GTTCTTCSEEEEEES
T ss_pred h---hcCCCCCCEEECCCC-CCCCC---------hH--HcCCCCCCEEECCCCc-cCCChh----hccCCcccEeecCCc
Confidence 4 778999999999998 55554 22 4788999999999874 555542 778999999999753
Q ss_pred CCccccc----CCcceEEEecCCCCCcccC------CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchh
Q 014100 177 PDMETFI----SNSVVHVTTDNKEPEKLTS------EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDES 246 (430)
Q Consensus 177 ~~l~~~~----~~~L~~L~l~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~ 246 (430)
+...+ .++|++|++++|.+..... ++.+.+.+....-....+.+++|+.|+++++ .++.+. .+
T Consensus 167 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~--~l-- 239 (466)
T 1o6v_A 167 --VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG--TL-- 239 (466)
T ss_dssp --CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--GG--
T ss_pred --ccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCC-Ccccch--hh--
Confidence 33322 5789999999998665432 2222222111111112455778888888774 555542 22
Q ss_pred hhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccC
Q 014100 247 NKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 247 ~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|++++|. +..+++ +..+++|+.|++++|. +..++. ...+++|++|++++|. +.++.
T Consensus 240 -~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~-------- 303 (466)
T 1o6v_A 240 -ASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDIS-------- 303 (466)
T ss_dssp -GGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCG--------
T ss_pred -hcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCch--------
Confidence 677888888888864 344433 6677888888888764 444443 5678888888888864 33332
Q ss_pred CcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
....+++|+.|++++| .++++.. ...+++|++|++.+| .++.++ ....+++|+.+++.++..
T Consensus 304 -~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 304 -PISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI 365 (466)
T ss_dssp -GGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred -hhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence 1234788999999887 4555442 234899999999887 455553 455789999999988764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-19 Score=182.78 Aligned_cols=153 Identities=12% Similarity=0.128 Sum_probs=113.0
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccc---ccCCcccCCCCCEEEEccCCCccc-ccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK---LVTPSWHLENLATLEVSKCHGLIN-VLTLS 295 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~ 295 (430)
+.+++|+.|+++++ .++...+..+ ..+++|+.|+++++ .++. +|..+..+++|+.|+++++. +.. ++..
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~- 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGC---STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR- 422 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC-
T ss_pred cCCCCceEEECCCC-ccccchhhhh---cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChh-
Confidence 56788999999885 5665444555 77889999999886 4443 34456788899999998875 443 5443
Q ss_pred ccccccCccEEEEcccccchhhhcccccccCCcceee-cccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcc
Q 014100 296 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 374 (430)
....+++|++|+++++.-...++. .+ ++|+.|+++++ .++.++.+. ..+++|++|+++++ .++.
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKS 487 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCC
T ss_pred hhcCcccCCEEECCCCCCCcchhh-----------hhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCC
Confidence 356788999999988753222221 13 68999999987 788887644 36899999999886 5668
Q ss_pred ccCC-CcCCCCceEEecccCC
Q 014100 375 FSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 375 l~~~-~~~~~~L~~l~l~~~~ 394 (430)
+|.. +..+++|+.+++++++
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCC
T ss_pred CCHHHHhcCCCCCEEEecCCC
Confidence 8887 7789999999997775
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=186.24 Aligned_cols=278 Identities=16% Similarity=0.124 Sum_probs=199.6
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
..+++|+++.+ .++.+..++. .+..+++|++|+++++. +..+.... ...+++|++|++++| .+.
T Consensus 72 ~~l~~L~~L~L----------~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~ 136 (597)
T 3oja_B 72 DSFRQVELLNL----------NDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERN-DLS 136 (597)
T ss_dssp HHCCCCSEEEC----------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCC
T ss_pred ccCCCCcEEEC----------CCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH---HcCCCCCCEEEeeCC-CCC
Confidence 45788999998 3345556654 67889999999999886 65433221 267899999999998 567
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.+++ ..+.++++|++|++++| .+..+ +...+..+++|+.|+++++ .+..++ ...+++|+.|++
T Consensus 137 ~l~~-~~~~~l~~L~~L~Ls~N-~l~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~-----~~~l~~L~~L~l 199 (597)
T 3oja_B 137 SLPR-GIFHNTPKLTTLSMSNN-NLERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLIPSLFHANV 199 (597)
T ss_dssp CCCT-TTTTTCTTCCEEECCSS-CCCBC---------CTTTTTTCTTCCEEECTTS-CCSBCC-----GGGCTTCSEEEC
T ss_pred CCCH-HHhccCCCCCEEEeeCC-cCCCC---------ChhhhhcCCcCcEEECcCC-CCCCcC-----hhhhhhhhhhhc
Confidence 6544 44678999999999998 45544 3333488899999999986 354442 566788888888
Q ss_pred ecCCCccccc-CCcceEEEecCCCCCcccC-----CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhh
Q 014100 174 ENCPDMETFI-SNSVVHVTTDNKEPEKLTS-----EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN 247 (430)
Q Consensus 174 ~~c~~l~~~~-~~~L~~L~l~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~ 247 (430)
+++. ++.++ +.+|+.|++++|.+..+.. ++.+.+.+....-....+.+++|+.|+++++ .++...+..+
T Consensus 200 ~~n~-l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~--- 274 (597)
T 3oja_B 200 SYNL-LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF--- 274 (597)
T ss_dssp CSSC-CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGG---
T ss_pred ccCc-cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHh---
Confidence 8765 44443 6677888887777543321 2222222211111234567899999999995 7887766666
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
..+++|+.|+++++ .+..+|.....+++|+.|++++|. +..+|. .+..+++|+.|++++|. +..+.
T Consensus 275 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~~N~-l~~~~--------- 340 (597)
T 3oja_B 275 VKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHNS-IVTLK--------- 340 (597)
T ss_dssp TTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSSC-CCCCC---------
T ss_pred cCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECCCCC-CCCcC---------
Confidence 88999999999996 566788777789999999999875 556654 35779999999999975 33321
Q ss_pred cceeecccceeecccCC
Q 014100 328 GCVVFEELGYLGLDCLP 344 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~ 344 (430)
...+++|+.|++++++
T Consensus 341 -~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 341 -LSTHHTLKNLTLSHND 356 (597)
T ss_dssp -CCTTCCCSEEECCSSC
T ss_pred -hhhcCCCCEEEeeCCC
Confidence 2337899999999875
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-19 Score=175.83 Aligned_cols=301 Identities=16% Similarity=0.176 Sum_probs=210.6
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhh-hcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCY-EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ .++++.+.+ ..+.+..++ ..+..+++|++|+++++. +..+... ....+++|++|+
T Consensus 23 l~~ip~~~--~~~l~~L~L----------~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~---~~~~l~~L~~L~ 86 (477)
T 2id5_A 23 FVAVPEGI--PTETRLLDL----------GKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPG---AFNNLFNLRTLG 86 (477)
T ss_dssp CSSCCSCC--CTTCSEEEC----------CSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT---TTTTCTTCCEEE
T ss_pred cCcCCCCC--CCCCcEEEC----------CCCccceECHhHccCCCCCCEEECCCCc-cCEeChh---hhhCCccCCEEE
Confidence 33444433 246888887 335555654 467889999999999885 6654222 126789999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
++++ .+..+++ ..+.++++|++|++++| .+..+ +...+..+++|++|+++++. +..+... .+..+
T Consensus 87 L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l 151 (477)
T 2id5_A 87 LRSN-RLKLIPL-GVFTGLSNLTKLDISEN-KIVIL---------LDYMFQDLYNLKSLEVGDND-LVYISHR--AFSGL 151 (477)
T ss_dssp CCSS-CCCSCCT-TSSTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEEECCTT-CCEECTT--SSTTC
T ss_pred CCCC-cCCccCc-ccccCCCCCCEEECCCC-ccccC---------ChhHccccccCCEEECCCCc-cceeChh--hccCC
Confidence 9997 5666544 34778999999999998 55555 33335889999999999863 5444322 26788
Q ss_pred CCccEEEEecCCCccccc------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceee
Q 014100 166 PELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHL 239 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~ 239 (430)
++|++|++.+|. ++.++ .++|+.|++++|.+....+ .....+++|+.|++++++.+..+
T Consensus 152 ~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--------------~~~~~l~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 152 NSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRD--------------YSFKRLYRLKVLEISHWPYLDTM 216 (477)
T ss_dssp TTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECT--------------TCSCSCTTCCEEEEECCTTCCEE
T ss_pred CCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeCh--------------hhcccCcccceeeCCCCcccccc
Confidence 999999999985 55544 5789999999998766441 23456789999999988777777
Q ss_pred cccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhh
Q 014100 240 WKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQII 318 (430)
Q Consensus 240 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 318 (430)
+... ....+|++|++++| .++.+|. .+..+++|+.|+++++. +..++.. .+..+++|++|+++++. +..+.
T Consensus 217 ~~~~----~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~ 288 (477)
T 2id5_A 217 TPNC----LYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGS-MLHELLRLQEIQLVGGQ-LAVVE 288 (477)
T ss_dssp CTTT----TTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTT-SCTTCTTCCEEECCSSC-CSEEC
T ss_pred Cccc----ccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChh-hccccccCCEEECCCCc-cceEC
Confidence 5544 33458999999887 4555653 45678899999998865 5555432 35678899999998863 33332
Q ss_pred cccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCC
Q 014100 319 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 319 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
+.....+++|+.|+++++ .++.++.. .+..+++|++|++.+++
T Consensus 289 -------~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 289 -------PYAFRGLNYLRVLNVSGN-QLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp -------TTTBTTCTTCCEEECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred -------HHHhcCcccCCEEECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence 112233788999999886 56666542 22347888999887764
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-19 Score=180.82 Aligned_cols=343 Identities=15% Similarity=0.175 Sum_probs=182.4
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ +++|+++.+. .+.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|+
T Consensus 17 l~~ip~~~--~~~L~~L~Ls----------~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~ 80 (549)
T 2z81_A 17 FTSIPSGL--TAAMKSLDLS----------FNKITYIGHGDLRACANLQVLILKSSR-INTIEGDA---FYSLGSLEHLD 80 (549)
T ss_dssp CSSCCSCC--CTTCCEEECC----------SSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTT---TTTCTTCCEEE
T ss_pred cccccccC--CCCccEEECc----------CCccCccChhhhhcCCcccEEECCCCC-cCccChhh---ccccccCCEEE
Confidence 44445443 2678888883 3344444 3456777888888888775 55433221 25677888888
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
+++| .+...++. .++++++|++|++++|. +..+.. |.. +..+++|++|+++++..++.++... +..+
T Consensus 81 Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~-~~~l~~L~~L~L~~n~~~~~~~~~~--~~~l 147 (549)
T 2z81_A 81 LSDN-HLSSLSSS-WFGPLSSLKYLNLMGNP-YQTLGV-------TSL-FPNLTNLQTLRIGNVETFSEIRRID--FAGL 147 (549)
T ss_dssp CTTS-CCCSCCHH-HHTTCTTCCEEECTTCC-CSSSCS-------SCS-CTTCTTCCEEEEEESSSCCEECTTT--TTTC
T ss_pred CCCC-ccCccCHH-HhccCCCCcEEECCCCc-ccccch-------hhh-hhccCCccEEECCCCccccccCHhh--hhcc
Confidence 8876 45554443 36678888888888773 332100 122 2556666666666654444443211 4455
Q ss_pred CCccEEEEecCCCccccc-----------------------------CCcceEEEecCCCCCccc-----------CCCc
Q 014100 166 PELRYLAIENCPDMETFI-----------------------------SNSVVHVTTDNKEPEKLT-----------SEEN 205 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~-----------------------------~~~L~~L~l~~~~~~~~~-----------~~~~ 205 (430)
++|++|+++++..-...+ .++|++|++++|.+.+.. .++.
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 566666665544221111 346777777776654421 1111
Q ss_pred ceeccC------ccccC------------------------------CcCCCC---------------------------
Q 014100 206 FFLTDQ------IQPLF------------------------------DEKVAF--------------------------- 222 (430)
Q Consensus 206 l~~~~~------~~~~~------------------------------~~~~~~--------------------------- 222 (430)
+.+.+. ...+. .....+
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 111000 00000 000111
Q ss_pred --CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc---CCcccCCCCCEEEEccCCCcccccc-ccc
Q 014100 223 --PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLT-LST 296 (430)
Q Consensus 223 --~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~~~~-~~~ 296 (430)
++|+.|+++++ .++.++...+ ..+++|+.|+++++.....+| ..+..+++|+.|++++|. ++.++. ...
T Consensus 308 ~~~~L~~L~l~~n-~l~~ip~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 382 (549)
T 2z81_A 308 LLEKVKRITVENS-KVFLVPCSFS---QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEI 382 (549)
T ss_dssp HSTTCCEEEEESS-CCCCCCHHHH---HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHH
T ss_pred hcccceEEEeccC-ccccCCHHHH---hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhh
Confidence 23444444442 3333322211 457788888888775544442 235577888888888764 444432 123
Q ss_pred cccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCC----------------cccCCCC
Q 014100 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN----------------YALEFPS 360 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~----------------~~~~~~~ 360 (430)
+..+++|++|++++| .++.+. .....+++|+.|+++++. ++.++... ....+++
T Consensus 383 ~~~l~~L~~L~Ls~N-~l~~lp--------~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~ 452 (549)
T 2z81_A 383 LLTLKNLTSLDISRN-TFHPMP--------DSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPR 452 (549)
T ss_dssp GGGCTTCCEEECTTC-CCCCCC--------SCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTT
T ss_pred hhcCCCCCEEECCCC-CCccCC--------hhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCCh
Confidence 567888888888886 344332 122234556666665542 32222110 0013678
Q ss_pred ccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 361 LEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 361 L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
|++|++++| +++.+|.. ..+++|++++++++..
T Consensus 453 L~~L~Ls~N-~l~~ip~~-~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 453 LQELYISRN-KLKTLPDA-SLFPVLLVMKISRNQL 485 (549)
T ss_dssp CCEEECCSS-CCSSCCCG-GGCTTCCEEECCSSCC
T ss_pred hcEEECCCC-ccCcCCCc-ccCccCCEEecCCCcc
Confidence 888888776 55677763 4578888888877653
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-19 Score=176.86 Aligned_cols=278 Identities=17% Similarity=0.140 Sum_probs=195.2
Q ss_pred CcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCC
Q 014100 13 GIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNM 92 (430)
Q Consensus 13 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 92 (430)
++..+++|+++.+ ..+.+..++ +..+++|++|+++++. +..+. ...+++|++|++++| .+
T Consensus 59 ~l~~l~~L~~L~L----------s~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~------~~~l~~L~~L~L~~N-~l 118 (457)
T 3bz5_A 59 GIEKLTGLTKLIC----------TSNNITTLD--LSQNTNLTYLACDSNK-LTNLD------VTPLTKLTYLNCDTN-KL 118 (457)
T ss_dssp TGGGCTTCSEEEC----------CSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC------CTTCTTCCEEECCSS-CC
T ss_pred hhcccCCCCEEEc----------cCCcCCeEc--cccCCCCCEEECcCCC-Cceee------cCCCCcCCEEECCCC-cC
Confidence 5677899999999 334455554 7789999999999886 66532 367999999999998 56
Q ss_pred CcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEE
Q 014100 93 LSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172 (430)
Q Consensus 93 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 172 (430)
..+ + +..+++|++|++++| .+..+ + ...+++|++|+++++..++.++ +..+++|++|+
T Consensus 119 ~~l-~---~~~l~~L~~L~l~~N-~l~~l---------~---l~~l~~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~ 176 (457)
T 3bz5_A 119 TKL-D---VSQNPLLTYLNCARN-TLTEI---------D---VSHNTQLTELDCHLNKKITKLD-----VTPQTQLTTLD 176 (457)
T ss_dssp SCC-C---CTTCTTCCEEECTTS-CCSCC---------C---CTTCTTCCEEECTTCSCCCCCC-----CTTCTTCCEEE
T ss_pred Cee-c---CCCCCcCCEEECCCC-cccee---------c---cccCCcCCEEECCCCCcccccc-----cccCCcCCEEE
Confidence 664 3 568999999999998 45443 1 3678999999999987676652 67789999999
Q ss_pred EecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhh
Q 014100 173 IENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKA 249 (430)
Q Consensus 173 l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~ 249 (430)
+++|. ++.++ .++|+.|++++|.+.+.. .+.+++|+.|+++++ .++.++ + ..
T Consensus 177 ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~-----------------l~~l~~L~~L~Ls~N-~l~~ip---~---~~ 231 (457)
T 3bz5_A 177 CSFNK-ITELDVSQNKLLNRLNCDTNNITKLD-----------------LNQNIQLTFLDCSSN-KLTEID---V---TP 231 (457)
T ss_dssp CCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC-----------------CTTCTTCSEEECCSS-CCSCCC---C---TT
T ss_pred CCCCc-cceeccccCCCCCEEECcCCcCCeec-----------------cccCCCCCEEECcCC-cccccC---c---cc
Confidence 99875 55555 568999999999877643 567899999999985 677753 3 77
Q ss_pred cccccEEeeccCcccccccCCcccCCCC----------CEEEEccCCCccccccccccccccCccEEEEcccccchhhhc
Q 014100 250 FANLIRLKISECSKLQKLVTPSWHLENL----------ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~~~~l~~L----------~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
+++|+.|+++++ .++.++ ...+++| +.|++++|..+..++ ...+++|+.|++++|..+..+..
T Consensus 232 l~~L~~L~l~~N-~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 232 LTQLTYFDCSVN-PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CTTCSEEECCSS-CCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred cCCCCEEEeeCC-cCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc
Confidence 899999999987 455444 2344544 455555555555544 35689999999999987666542
Q ss_pred ccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 014100 320 LQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
....-..-.....++|+.|++.++ +++.++. ..+++|++|+++++
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~l----~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNT-ELTELDV----SHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTC-CCSCCCC----TTCTTCSEEECCSS
T ss_pred CCCcceEechhhcccCCEEECCCC-ccccccc----ccCCcCcEEECCCC
Confidence 100000000112345555555553 3444432 34888999998775
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=180.41 Aligned_cols=334 Identities=12% Similarity=0.092 Sum_probs=180.5
Q ss_pred cceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++++++.+ ..+.+..++. .+..+++|++|+++++. +..+.... ...+++|++|++++| .+..++
T Consensus 25 ~~l~~L~L----------s~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l~ 89 (680)
T 1ziw_A 25 TNITVLNL----------THNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPEL---CQKLPMLKVLNLQHN-ELSQLS 89 (680)
T ss_dssp TTCSEEEC----------CSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTH---HHHCTTCCEEECCSS-CCCCCC
T ss_pred CCCcEEEC----------CCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHH---HhcccCcCEEECCCC-ccCccC
Confidence 56888887 3344555554 36678888888888765 44322111 145788888888887 566654
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+. .+.++++|++|++++| .+..+ +...+..+++|++|+++++. +...+.. .+..+++|++|+++++
T Consensus 90 ~~-~~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 90 DK-TFAFCTNLTELHLMSN-SIQKI---------KNNPFVKQKNLITLDLSHNG-LSSTKLG--TQVQLENLQELLLSNN 155 (680)
T ss_dssp TT-TTTTCTTCSEEECCSS-CCCCC---------CSCTTTTCTTCCEEECCSSC-CSCCCCC--SSSCCTTCCEEECCSS
T ss_pred hh-hhccCCCCCEEECCCC-ccCcc---------ChhHccccCCCCEEECCCCc-ccccCch--hhcccccCCEEEccCC
Confidence 43 2667888888888887 44444 33334778888888888764 3333221 1557788888888876
Q ss_pred CCccccc--------CCcceEEEecCCCCCcccC-----CCcce------------------------------ecc-Cc
Q 014100 177 PDMETFI--------SNSVVHVTTDNKEPEKLTS-----EENFF------------------------------LTD-QI 212 (430)
Q Consensus 177 ~~l~~~~--------~~~L~~L~l~~~~~~~~~~-----~~~l~------------------------------~~~-~~ 212 (430)
. ++..+ .++|++|++++|.+.+..+ +.++. +.+ ..
T Consensus 156 ~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l 234 (680)
T 1ziw_A 156 K-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234 (680)
T ss_dssp C-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred c-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence 5 33322 3578888888876554331 11111 000 00
Q ss_pred ccc-CCcCCCC--CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcc
Q 014100 213 QPL-FDEKVAF--PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 213 ~~~-~~~~~~~--~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 289 (430)
... ......+ ++|+.|+++++ .++.+.+..+ ..+++|++|+++++......+..+..+++|+.|+++++..-.
T Consensus 235 ~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 235 STTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSF---AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp CEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTT---TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred cccChhHhhccCcCCCCEEECCCC-CcCccCcccc---cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence 000 0011122 34777777764 5565555555 666777777777764444444455666777777776532111
Q ss_pred -----cccc--ccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC------------------
Q 014100 290 -----NVLT--LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP------------------ 344 (430)
Q Consensus 290 -----~~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------------------ 344 (430)
.++. ...+..+++|++|+++++. +..+.. .....+++|+.|+++++.
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~ 382 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-------NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-------TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC
T ss_pred ccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-------hHhccccCCcEEECCCCchhhhhcchhhhcccccCc
Confidence 1110 0013456666777666543 222110 011124445555554432
Q ss_pred ---------CCceecCCCcccCCCCccEEEeccCCCCcccc-CCCcCCCCceEEecccCC
Q 014100 345 ---------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 345 ---------~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~l~l~~~~ 394 (430)
.++.+... ....+++|++|+++++.....+| ..+..+++|++++++++.
T Consensus 383 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 383 LHILNLTKNKISKIESD-AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441 (680)
T ss_dssp CCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS
T ss_pred CceEECCCCCCCeEChh-hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC
Confidence 23333221 12245667777776654433344 234456677777776654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-19 Score=182.72 Aligned_cols=347 Identities=16% Similarity=0.150 Sum_probs=204.8
Q ss_pred CcccccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcC
Q 014100 13 GIVSTPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTN 91 (430)
Q Consensus 13 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 91 (430)
.+..+++|+++.+.+ +.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|++++| .
T Consensus 44 ~~~~l~~L~~L~Ls~----------n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n-~ 108 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGF----------NTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKT---FAFCTNLTELHLMSN-S 108 (680)
T ss_dssp GGGGGTTCSEEECCS----------SCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-C
T ss_pred HHhCCCcCcEEECCC----------CccCccCHHHHhcccCcCEEECCCCc-cCccChhh---hccCCCCCEEECCCC-c
Confidence 356688899999833 333333 3345667888888888775 55443321 256788888888887 4
Q ss_pred CCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEE
Q 014100 92 MLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYL 171 (430)
Q Consensus 92 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L 171 (430)
+..+++.. +.++++|++|++++|. +... +...+..+++|++|+++++. ++.++........+++|++|
T Consensus 109 l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 109 IQKIKNNP-FVKQKNLITLDLSHNG-LSST---------KLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp CCCCCSCT-TTTCTTCCEEECCSSC-CSCC---------CCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEE
T ss_pred cCccChhH-ccccCCCCEEECCCCc-cccc---------CchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEE
Confidence 55554433 6678888888888873 3333 22223566777777776642 33332211112234566666
Q ss_pred EEecCCCccccc---------------------------------CCcceEEEecCCCCCcccC----------CCccee
Q 014100 172 AIENCPDMETFI---------------------------------SNSVVHVTTDNKEPEKLTS----------EENFFL 208 (430)
Q Consensus 172 ~l~~c~~l~~~~---------------------------------~~~L~~L~l~~~~~~~~~~----------~~~l~~ 208 (430)
++++|. ++.++ .++|+.|++++|.+.+..+ ++.+.+
T Consensus 177 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 177 ELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp ECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred ECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 666553 22221 1356666666665443221 222222
Q ss_pred cc-CccccC-CcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccc-----cccC----CcccCCCC
Q 014100 209 TD-QIQPLF-DEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ-----KLVT----PSWHLENL 277 (430)
Q Consensus 209 ~~-~~~~~~-~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~----~~~~l~~L 277 (430)
.+ ...... ...+.+++|+.|+++++ .++...+..+ ..+++|+.|+++++..-. .+|. .+..+++|
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSL---HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTT---TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred CCCCcCccCcccccCcccccEeeCCCC-ccCccChhhh---cCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 11 111111 23567899999999985 7777766666 888999999998753221 2221 45577888
Q ss_pred CEEEEccCCCccccccccccccccCccEEEEccccc-----------------chhhhccc--c-cccCCcceeecccce
Q 014100 278 ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM-----------------IEQIIQLQ--V-GEEAKGCVVFEELGY 337 (430)
Q Consensus 278 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~-----------------l~~~~~~~--~-~~~~~~~~~~~~L~~ 337 (430)
+.|+++++. +..++.. .+..+++|++|++++|.. ++.+.... . +..+.....+++|+.
T Consensus 332 ~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 332 EHLNMEDND-IPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp CEEECCSCC-BCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CEEECCCCc-cCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 999888764 4444322 345678888888876531 11000000 0 001112234788999
Q ss_pred eecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCC
Q 014100 338 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 338 L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
|++.++.-...++. .....+++|++|++++|......+..+..+++|+.+++.++.
T Consensus 410 L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 465 (680)
T 1ziw_A 410 LDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465 (680)
T ss_dssp EECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC
T ss_pred EeCCCCcCccccCc-ccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc
Confidence 99998743333432 233458999999999986544445567789999999998765
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-19 Score=173.95 Aligned_cols=312 Identities=14% Similarity=0.091 Sum_probs=206.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..++.+|. + .++|++|+++++. +..+... ....+++|++|++++|.....+++ ..+.++++|++|++++| .
T Consensus 20 ~~l~~lp~-l--~~~l~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~~-~~~~~l~~L~~L~Ls~n-~ 90 (455)
T 3v47_A 20 RGLHQVPE-L--PAHVNYVDLSLNS-IAELNET---SFSRLQDLQFLKVEQQTPGLVIRN-NTFRGLSSLIILKLDYN-Q 90 (455)
T ss_dssp SCCSSCCC-C--CTTCCEEECCSSC-CCEECTT---TTSSCTTCCEEECCCCSTTCEECT-TTTTTCTTCCEEECTTC-T
T ss_pred CCcccCCC-C--CCccCEEEecCCc-cCcCChh---HhccCccccEEECcCCcccceECc-ccccccccCCEEeCCCC-c
Confidence 44566665 2 2789999999886 6654222 226899999999999843334333 33788999999999998 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +...+..+++|++|+++++.-....+.. ..+..+++|++|++++|......| .++|++|+
T Consensus 91 l~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 91 FLQL---------ETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp TCEE---------CTTTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred cCcc---------ChhhccCcccCCEEeCCCCCCCccccCc-ccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 5555 2333488999999999997533222222 126678999999999987433322 46899999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCC--CCCCcEEecccCCCceeecccCchh-----hhhcccccEEeeccCccc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDES-----NKAFANLIRLKISECSKL 264 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~L~~L~L~~~~~l~~~~~~~~~~-----~~~l~~L~~L~l~~c~~l 264 (430)
+++|.+.+..+ ..... .++|+.|+++++ .+..+....+.. ...+++|+.|+++++...
T Consensus 161 L~~n~l~~~~~--------------~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 161 LTFNKVKSICE--------------EDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CTTCCBSCCCT--------------TTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred CCCCcccccCh--------------hhhhccccccccccccccC-cccccchhhccccccccccccceeeeEecCCCccc
Confidence 99998766441 11222 268899999885 555543332210 024577888888887433
Q ss_pred ccccCCc-------------------------------------c--cCCCCCEEEEccCCCccccccccccccccCccE
Q 014100 265 QKLVTPS-------------------------------------W--HLENLATLEVSKCHGLINVLTLSTSESLVNLGR 305 (430)
Q Consensus 265 ~~l~~~~-------------------------------------~--~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 305 (430)
...+..+ . ..++|+.|+++++. +...+.. .+..+++|++
T Consensus 226 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~ 303 (455)
T 3v47_A 226 ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS-VFSHFTDLEQ 303 (455)
T ss_dssp HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT-TTTTCTTCCE
T ss_pred ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchh-hcccCCCCCE
Confidence 2221110 0 12578888888765 3333222 3577899999
Q ss_pred EEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCc
Q 014100 306 MKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKL 385 (430)
Q Consensus 306 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L 385 (430)
|+++++. +..+. +.....+++|+.|+++++ .++.+... ....+++|++|++++|......|..+..+++|
T Consensus 304 L~Ls~n~-l~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 304 LTLAQNE-INKID-------DNAFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp EECTTSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EECCCCc-ccccC-------hhHhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccc
Confidence 9998874 33332 112233789999999987 56666432 23458999999999985544447778889999
Q ss_pred eEEecccCCC
Q 014100 386 NKVKPTEEED 395 (430)
Q Consensus 386 ~~l~l~~~~~ 395 (430)
++++++++..
T Consensus 374 ~~L~L~~N~l 383 (455)
T 3v47_A 374 KELALDTNQL 383 (455)
T ss_dssp CEEECCSSCC
T ss_pred cEEECCCCcc
Confidence 9999988654
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-18 Score=183.68 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=60.2
Q ss_pred cCCcccccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecC
Q 014100 11 SQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDC 89 (430)
Q Consensus 11 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c 89 (430)
+..+..+++|+++.+.+. ..+..+ +..+..+++|++|+++++. +..+... ....+++|++|++++|
T Consensus 41 ~~~~~~l~~L~~LdLs~n---------~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~---~~~~l~~L~~L~Ls~n 107 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQ---------YTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPD---AFQGLFHLFELRLYFC 107 (844)
T ss_dssp SSSCSSCCSCSEEEECTT---------CCCCEECTTTTSSCTTCCEEECTTCC-CCEECTT---SSCSCSSCCCEECTTC
T ss_pred hhHCcccccCeEEeCCCC---------CCccccCHHHhcCCCCCCEEECCCCc-CcccCHh---HccCCcccCEeeCcCC
Confidence 445666778888887332 112333 3445666677777776665 4433111 1145666666666665
Q ss_pred cCCCc-CCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccc
Q 014100 90 TNMLS-AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 90 ~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (430)
.+.. .+....++++++|++|++++|. +..+. +...+..+++|++|+++++
T Consensus 108 -~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~--------~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 108 -GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLY--------LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp -CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCC--------CCGGGGTCSSCCEEEEESS
T ss_pred -CCCcccccCccccccCCCCEEECCCCc-ccccc--------cchhHhhCCCCCEEECCCC
Confidence 3333 2222235566666666666663 22221 1112355666666666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-19 Score=167.03 Aligned_cols=206 Identities=16% Similarity=0.237 Sum_probs=114.2
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
...++++|+++++. +..++... ..+++|++|+++++ .+..++. . +.++++|++|++++| .+..+
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n-~l~~lp~-~-~~~l~~L~~L~Ls~n-~l~~l------- 142 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAA-GLMELPD-T-MQQFAGLETLTLARN-PLRAL------- 142 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESS-CCCCCCS-C-GGGGTTCSEEEEESC-CCCCC-------
T ss_pred cccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCC-CccchhH-H-HhccCCCCEEECCCC-ccccC-------
Confidence 35778888888765 55544433 56788888888877 4554433 2 667888888888887 44444
Q ss_pred CCcCCCcccccccceeeccccccccccccCccc------ccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN------IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~------~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~ 202 (430)
|..+ ..+++|++|++++|..++.+|..... +..+++|++|++++|. ++.+|
T Consensus 143 --p~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp------------------- 199 (328)
T 4fcg_A 143 --PASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLP------------------- 199 (328)
T ss_dssp --CGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCC-------------------
T ss_pred --cHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcch-------------------
Confidence 4443 67788888888887767666554210 2236777777777664 33333
Q ss_pred CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEE
Q 014100 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 282 (430)
...+.+++|+.|+++++ .++.++. .+ ..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus 200 --------------~~l~~l~~L~~L~L~~N-~l~~l~~-~l---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 200 --------------ASIANLQNLKSLKIRNS-PLSALGP-AI---HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp --------------GGGGGCTTCCEEEEESS-CCCCCCG-GG---GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred --------------HhhcCCCCCCEEEccCC-CCCcCch-hh---ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 11233444555555442 3333322 12 44445555555554444444444444555555555
Q ss_pred ccCCCccccccccccccccCccEEEEcccccc
Q 014100 283 SKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 283 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++|+....+|. .+..+++|++|++++|+.+
T Consensus 261 ~~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 261 KDCSNLLTLPL--DIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp TTCTTCCBCCT--TGGGCTTCCEEECTTCTTC
T ss_pred CCCCchhhcch--hhhcCCCCCEEeCCCCCch
Confidence 55444444433 1344455555555554433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=176.47 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=95.4
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccc-ccccccccCccEEEEcccccchhhhcccccccC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|++|+++++.....+|..+..+++|+.|++++|. +..++. ...+..+++|++|+++++.....+...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------ 393 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------ 393 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC------
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc------
Confidence 466888999998876555567777888999999998875 443321 113567889999999887532223210
Q ss_pred CcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCCC
Q 014100 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDG 396 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~ 396 (430)
....+++|+.|+++++.-...++... .++|++|++++| .++.+|.....+++|++++++++...
T Consensus 394 -~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 394 -DCSWTKSLLSLNMSSNILTDTIFRCL----PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp -SCCCCTTCCEEECCSSCCCGGGGGSC----CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred -hhccCccCCEEECcCCCCCcchhhhh----cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCC
Confidence 12336889999999875333333211 268999999987 66688988778999999999887543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-18 Score=172.93 Aligned_cols=326 Identities=18% Similarity=0.179 Sum_probs=215.4
Q ss_pred cccccceeeeEeecccccccCccchhhhh--hhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCc----cEEEee
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQK--CYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNL----RHLVVD 87 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~--l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L----~~L~l~ 87 (430)
+..+++|+++.+. ++.+.. +|..+..+++|++|+++++. +..+.... ...+.+| +.|+++
T Consensus 120 ~~~l~~L~~L~L~----------~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 120 IGHLKTLKELNVA----------HNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD---LRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTCTTCCEEECC----------SSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGG---GHHHHTCTTCCCEEECT
T ss_pred ccccccccEEecC----------CCccceecChhhhcccCCCCEEeCcCCc-cceecHHH---ccchhccchhhhhcccC
Confidence 6678899999983 344443 57778889999999999876 55432211 1234455 566776
Q ss_pred cCcCCCcCCchhHHhhcCCCCEEEEecCCCc------------------------------cEee---------------
Q 014100 88 DCTNMLSAIPANLIRCLNNLRWLEVRNCDSL------------------------------EEVL--------------- 122 (430)
Q Consensus 88 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l------------------------------~~~~--------------- 122 (430)
++ .+...++.. +..+ +|++|++++|... ..+.
T Consensus 186 ~n-~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 186 LN-PMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp TC-CCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CC-CceecCHHH-hccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 65 344433322 3322 5666666654110 0000
Q ss_pred ccc---cc-cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCC
Q 014100 123 HLE---EL-NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNK 195 (430)
Q Consensus 123 ~~~---~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~ 195 (430)
.+. .+ ...+.. +..+++|+.|++.++ .+..++.. ...+ +|++|++.+|. ++.+| .++|+.|++++|
T Consensus 263 ~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~-~l~~l~~~---~~~~-~L~~L~l~~n~-~~~l~~~~l~~L~~L~l~~n 335 (570)
T 2z63_A 263 RLAYLDYYLDDIIDL-FNCLTNVSSFSLVSV-TIERVKDF---SYNF-GWQHLELVNCK-FGQFPTLKLKSLKRLTFTSN 335 (570)
T ss_dssp EEEETTEEESCSTTT-TGGGTTCSEEEEESC-EECSCCBC---CSCC-CCSEEEEESCB-CSSCCBCBCSSCCEEEEESC
T ss_pred hhhcchhhhhhchhh-hcCcCcccEEEecCc-cchhhhhh---hccC-CccEEeeccCc-ccccCcccccccCEEeCcCC
Confidence 000 11 112233 478899999999986 45566654 5566 99999999986 44555 568999999998
Q ss_pred CCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeec--ccCchhhhhcccccEEeeccCcccccccCCccc
Q 014100 196 EPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW--KENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~--~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 273 (430)
...... ....+++|+.|+++++ .++... +..+ ..+++|++|++++|. +..+++.+..
T Consensus 336 ~~~~~~----------------~~~~~~~L~~L~l~~n-~l~~~~~~~~~~---~~~~~L~~L~l~~n~-l~~~~~~~~~ 394 (570)
T 2z63_A 336 KGGNAF----------------SEVDLPSLEFLDLSRN-GLSFKGCCSQSD---FGTTSLKYLDLSFNG-VITMSSNFLG 394 (570)
T ss_dssp BSCCBC----------------CCCBCTTCCEEECCSS-CCBEEEEEEHHH---HTCSCCCEEECCSCS-EEEEEEEEET
T ss_pred cccccc----------------ccccCCCCCEEeCcCC-ccCccccccccc---cccCccCEEECCCCc-cccccccccc
Confidence 865533 1267899999999985 566543 2233 778999999999974 5555555778
Q ss_pred CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCC-ceecCC
Q 014100 274 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLG 352 (430)
Q Consensus 274 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~ 352 (430)
+++|+.|++++|. +...+....+..+++|++|++++|...... +.....+++|+.|++.+|.-. ..++.
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~p~- 464 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------NGIFNGLSSLEVLKMAGNSFQENFLPD- 464 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEECS-
T ss_pred cCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccc--------hhhhhcCCcCcEEECcCCcCccccchh-
Confidence 9999999999875 443332223577899999999998532221 112233789999999997533 24553
Q ss_pred CcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 353 NYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
....+++|++|++++|......|..+..+++|++++++++..
T Consensus 465 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 465 -IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp -CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred -hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 334589999999999865544577788899999999988753
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.6e-18 Score=160.42 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=57.0
Q ss_pred hhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc
Q 014100 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 119 (430)
+..+|..+ .++|++|+++++. +..+.... ...+++|++|++++| .+....|.. +.++++|++|++++| .+.
T Consensus 43 l~~lp~~~--~~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~ 113 (330)
T 1xku_A 43 LEKVPKDL--PPDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINN-KISKISPGA-FAPLVKLERLYLSKN-QLK 113 (330)
T ss_dssp CCSCCCSC--CTTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSS-CCS
T ss_pred ccccCccC--CCCCeEEECCCCc-CCEeChhh---hccCCCCCEEECCCC-cCCeeCHHH-hcCCCCCCEEECCCC-cCC
Confidence 34444433 2466666666554 44332211 245666666666665 344443332 555666666666665 343
Q ss_pred EeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+ |..+ +++|++|+++++ .+..++.. ....+++|++|+++++.
T Consensus 114 ~l---------~~~~---~~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 114 EL---------PEKM---PKTLQELRVHEN-EITKVRKS--VFNGLNQMIVVELGTNP 156 (330)
T ss_dssp BC---------CSSC---CTTCCEEECCSS-CCCBBCHH--HHTTCTTCCEEECCSSC
T ss_pred cc---------Chhh---cccccEEECCCC-cccccCHh--HhcCCccccEEECCCCc
Confidence 33 2322 256666666654 23333211 13455666666666554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=164.02 Aligned_cols=223 Identities=21% Similarity=0.275 Sum_probs=166.0
Q ss_pred ccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
+++++++.+ .++.+..+|..+..+++|++|+++++. +..++... ..+++|++|++++| .+..+
T Consensus 80 ~~~l~~L~L----------~~n~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~----~~l~~L~~L~Ls~n-~l~~l- 142 (328)
T 4fcg_A 80 QPGRVALEL----------RSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM----QQFAGLETLTLARN-PLRAL- 142 (328)
T ss_dssp STTCCEEEE----------ESSCCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCG----GGGTTCSEEEEESC-CCCCC-
T ss_pred ccceeEEEc----------cCCCchhcChhhhhCCCCCEEECCCCC-ccchhHHH----hccCCCCEEECCCC-ccccC-
Confidence 467888888 445667888889999999999999886 65554433 68999999999998 56655
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCC--------cccccccceeeccccccccccccCcccccCCCCc
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHI--------GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPEL 168 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L 168 (430)
|.. +.++++|++|++++|..+..+ |..+ +..+++|++|+++++ .++.+|.. +..+++|
T Consensus 143 p~~-l~~l~~L~~L~L~~n~~~~~~---------p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~---l~~l~~L 208 (328)
T 4fcg_A 143 PAS-IASLNRLRELSIRACPELTEL---------PEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS---IANLQNL 208 (328)
T ss_dssp CGG-GGGCTTCCEEEEEEETTCCCC---------CSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG---GGGCTTC
T ss_pred cHH-HhcCcCCCEEECCCCCCcccc---------ChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh---hcCCCCC
Confidence 433 788999999999999777666 3333 245899999999986 56666654 7788899
Q ss_pred cEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhh
Q 014100 169 RYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNK 248 (430)
Q Consensus 169 ~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 248 (430)
++|++++|. ++.++ ...+.+++|+.|+++++.....+ +..+ .
T Consensus 209 ~~L~L~~N~-l~~l~---------------------------------~~l~~l~~L~~L~Ls~n~~~~~~-p~~~---~ 250 (328)
T 4fcg_A 209 KSLKIRNSP-LSALG---------------------------------PAIHHLPKLEELDLRGCTALRNY-PPIF---G 250 (328)
T ss_dssp CEEEEESSC-CCCCC---------------------------------GGGGGCTTCCEEECTTCTTCCBC-CCCT---T
T ss_pred CEEEccCCC-CCcCc---------------------------------hhhccCCCCCEEECcCCcchhhh-HHHh---c
Confidence 999998875 33222 12455677888888876544443 3444 6
Q ss_pred hcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcc
Q 014100 249 AFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 249 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 310 (430)
.+++|+.|++++|.....+|..+..+++|+.|++++|+....+|. .+..+++|+.+++..
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence 778888888888877777777777888888888888877777765 367778888887754
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=177.91 Aligned_cols=331 Identities=16% Similarity=0.129 Sum_probs=203.1
Q ss_pred ccceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSA 95 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 95 (430)
.++|+++.+ ..+.+..+ +..+..+++|++|+++++.....+.... ...+++|++|++++| .+...
T Consensus 23 p~~l~~LdL----------s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~---f~~L~~L~~L~Ls~N-~l~~~ 88 (844)
T 3j0a_A 23 LNTTERLLL----------SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA---FRNLPNLRILDLGSS-KIYFL 88 (844)
T ss_dssp CTTCCEEEE----------ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT---TSSCTTCCEEECTTC-CCCEE
T ss_pred CCCcCEEEC----------CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH---hcCCCCCCEEECCCC-cCccc
Confidence 467999998 33445555 4567899999999999986555542221 267899999999998 56665
Q ss_pred CchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEec
Q 014100 96 IPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIEN 175 (430)
Q Consensus 96 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~ 175 (430)
.|.. +.++++|++|++++|.-...++ +...+..+++|++|+++++. +........ +..+++|++|++++
T Consensus 89 ~p~~-~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 89 HPDA-FQGLFHLFELRLYFCGLSDAVL--------KDGYFRNLKALTRLDLSKNQ-IRSLYLHPS-FGKLNSLKSIDFSS 157 (844)
T ss_dssp CTTS-SCSCSSCCCEECTTCCCSSCCS--------TTCCCSSCSSCCEEEEESCC-CCCCCCCGG-GGTCSSCCEEEEES
T ss_pred CHhH-ccCCcccCEeeCcCCCCCcccc--------cCccccccCCCCEEECCCCc-ccccccchh-HhhCCCCCEEECCC
Confidence 5544 7889999999999984332221 22234789999999999864 444322111 67899999999998
Q ss_pred CCCccccc-------CCcceEEEecCCCCCcccC--------------CCcceeccC-----c-----------------
Q 014100 176 CPDMETFI-------SNSVVHVTTDNKEPEKLTS--------------EENFFLTDQ-----I----------------- 212 (430)
Q Consensus 176 c~~l~~~~-------~~~L~~L~l~~~~~~~~~~--------------~~~l~~~~~-----~----------------- 212 (430)
+..-...+ .++|+.|++++|.+.+..+ ++.+.+.+. .
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 75322111 1466666666665433211 111111100 0
Q ss_pred -------------------cccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCccc
Q 014100 213 -------------------QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 213 -------------------~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 273 (430)
...|.. ...++|+.|+++++ .+..+.+..+ ..+++|+.|+++++......+..+..
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~-l~~~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAG-LARSSVRHLDLSHG-FVFSLNSRVF---ETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTT-TTTSCCCEEECTTC-CCCEECSCCS---SSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred cccccccccccccccCCCChhhhhc-cccCCccEEECCCC-cccccChhhh---hcCCCCCEEECCCCcCCCCChHHhcC
Confidence 000000 01357888888874 6666666655 77788888888886444333455667
Q ss_pred CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCC
Q 014100 274 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN 353 (430)
Q Consensus 274 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 353 (430)
+++|+.|+++++. +..+... .+..+++|+.|+++++ .+..+. +.....+++|+.|+++++ .++.++.
T Consensus 313 l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~i~~~~-------~~~~~~l~~L~~L~Ls~N-~l~~i~~-- 379 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELYSS-NFYGLPKVAYIDLQKN-HIAIIQ-------DQTFKFLEKLQTLDLRDN-ALTTIHF-- 379 (844)
T ss_dssp CSSCCEEEEESCC-CSCCCSC-SCSSCTTCCEEECCSC-CCCCCC-------SSCSCSCCCCCEEEEETC-CSCCCSS--
T ss_pred CCCCCEEECCCCC-CCccCHH-HhcCCCCCCEEECCCC-CCCccC-------hhhhcCCCCCCEEECCCC-CCCcccC--
Confidence 8888888888764 4443222 3566788888888776 333332 112233677888888775 3444332
Q ss_pred cccCCCCccEEEeccCCCCccccCC----------------------CcCCCCceEEecccCCC
Q 014100 354 YALEFPSLEHVVVRQCPTMKIFSQG----------------------VVDAPKLNKVKPTEEED 395 (430)
Q Consensus 354 ~~~~~~~L~~L~l~~c~~l~~l~~~----------------------~~~~~~L~~l~l~~~~~ 395 (430)
+++|+.|.+.++. ++.+|.. ...+++|+.+++.++..
T Consensus 380 ----~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 380 ----IPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp ----CCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ----CCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 5566666665542 2233322 12567788888776653
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=170.18 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=96.2
Q ss_pred hhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccc-ccccccccCccEEEEcccccchhhhcccccccC
Q 014100 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|++|+++++.....+|..+..+++|+.|+++++ .++.++. ...+..+++|++|+++++.....+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~------- 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD------- 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-------
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-------
Confidence 45688999999887655556777788899999999886 4554432 11356789999999988753221221
Q ss_pred CcceeecccceeecccCCCCceecCCCcccCC-CCccEEEeccCCCCccccCCCcCCCCceEEecccCCCC
Q 014100 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDG 396 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~~ 396 (430)
.....+++|+.|+++++.--..++. .+ ++|++|++++| .++.+|.....+++|++++++++...
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred hhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCC
Confidence 1223478999999998753222332 13 69999999987 77789988889999999999887643
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-18 Score=160.84 Aligned_cols=151 Identities=12% Similarity=0.112 Sum_probs=75.2
Q ss_pred CCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCc
Q 014100 224 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 303 (430)
Q Consensus 224 ~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 303 (430)
+|+.|+++++ .++.++.. ..++|+.|+++++......+..+..+++|+.|+++++. +..++.. .+..+++|
T Consensus 173 ~L~~L~l~~n-~l~~l~~~------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L 243 (332)
T 2ft3_A 173 KLNYLRISEA-KLTGIPKD------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTL 243 (332)
T ss_dssp CCSCCBCCSS-BCSSCCSS------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTC
T ss_pred ccCEEECcCC-CCCccCcc------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChh-HhhCCCCC
Confidence 5666666653 44443221 12566666666643222222345556666666666543 3333321 23456666
Q ss_pred cEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcc-----cCCCCccEEEeccCCCC--cccc
Q 014100 304 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA-----LEFPSLEHVVVRQCPTM--KIFS 376 (430)
Q Consensus 304 ~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~-----~~~~~L~~L~l~~c~~l--~~l~ 376 (430)
++|+++++. +..+. .....+++|+.|++.++ .++.++..... ...++|+.|++.+++.. ...|
T Consensus 244 ~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 244 RELHLDNNK-LSRVP--------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp CEEECCSSC-CCBCC--------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred CEEECCCCc-CeecC--------hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 666666652 22221 12233566666666664 45554432111 11456777777776543 2333
Q ss_pred CCCcCCCCceEEecccC
Q 014100 377 QGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 377 ~~~~~~~~L~~l~l~~~ 393 (430)
..+..+++|+.+++.++
T Consensus 314 ~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGTTBCCSTTEEC---
T ss_pred ccccccchhhhhhcccc
Confidence 44455677777777554
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=157.82 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=138.9
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.++.+|..+ .++|++|+++++. +..+.... ...+++|++|++++| .+....+.. +.++++|++|++++| .+
T Consensus 44 ~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 44 GLKAVPKEI--SPDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CC
T ss_pred CccccCCCC--CCCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cC
Confidence 344555444 3566666666654 44332211 245666666666665 344443332 556666666666665 33
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcc--ccc----CCcceEEEe
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME--TFI----SNSVVHVTT 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~~~----~~~L~~L~l 192 (430)
..+ |..+ +++|++|+++++ .+..++... +..+++|++|++.++..-. ..+ ..+|++|++
T Consensus 115 ~~l---------~~~~---~~~L~~L~l~~n-~i~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l 179 (332)
T 2ft3_A 115 VEI---------PPNL---PSSLVELRIHDN-RIRKVPKGV--FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179 (332)
T ss_dssp CSC---------CSSC---CTTCCEEECCSS-CCCCCCSGG--GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred Ccc---------Cccc---cccCCEEECCCC-ccCccCHhH--hCCCccCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence 333 3332 156666666654 344343221 4456666666666654211 111 115666666
Q ss_pred cCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-CCc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPS 271 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~ 271 (430)
++|.+..++ ....++|+.|+++++ .++.+.+..+ ..+++|+.|+++++. +..++ ..+
T Consensus 180 ~~n~l~~l~-----------------~~~~~~L~~L~l~~n-~i~~~~~~~l---~~l~~L~~L~L~~N~-l~~~~~~~~ 237 (332)
T 2ft3_A 180 SEAKLTGIP-----------------KDLPETLNELHLDHN-KIQAIELEDL---LRYSKLYRLGLGHNQ-IRMIENGSL 237 (332)
T ss_dssp CSSBCSSCC-----------------SSSCSSCSCCBCCSS-CCCCCCTTSS---TTCTTCSCCBCCSSC-CCCCCTTGG
T ss_pred cCCCCCccC-----------------ccccCCCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCc-CCcCChhHh
Confidence 666555433 122356777777663 5555544444 566677777776653 33333 245
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCc-eec
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT-SFC 350 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~ 350 (430)
..+++|+.|+++++ .+..+|. .+..+++|++|+++++ .+..+....+... ......++|+.|++.+++... .+.
T Consensus 238 ~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~N~~~~~~~~ 312 (332)
T 2ft3_A 238 SFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTN-NITKVGVNDFCPV-GFGVKRAYYNGISLFNNPVPYWEVQ 312 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSS-CCCBCCTTSSSCS-SCCSSSCCBSEEECCSSSSCGGGSC
T ss_pred hCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCC-CCCccChhHcccc-ccccccccccceEeecCcccccccC
Confidence 56667777777665 3445543 2455667777777664 3333321100000 000114556667776655321 122
Q ss_pred CCCcccCCCCccEEEeccC
Q 014100 351 LGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 351 ~~~~~~~~~~L~~L~l~~c 369 (430)
. .....+++|+.+++.++
T Consensus 313 ~-~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 313 P-ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp G-GGGTTBCCSTTEEC---
T ss_pred c-ccccccchhhhhhcccc
Confidence 1 12233566666666554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=155.66 Aligned_cols=207 Identities=15% Similarity=0.147 Sum_probs=131.0
Q ss_pred hhhhhhhh-cccCCCCcceeeccccccceee-ccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 38 STIQKCYE-EMIGFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 38 ~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
+.+..++. .+..+++|++|+++++. +..+ +.. ...+++|++|+++++ .+..++.. + .++|++|++++|
T Consensus 62 n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~----~~~l~~L~~L~Ls~n-~l~~l~~~-~---~~~L~~L~l~~n 131 (330)
T 1xku_A 62 NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGA----FAPLVKLERLYLSKN-QLKELPEK-M---PKTLQELRVHEN 131 (330)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTT----TTTCTTCCEEECCSS-CCSBCCSS-C---CTTCCEEECCSS
T ss_pred CcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHH----hcCCCCCCEEECCCC-cCCccChh-h---cccccEEECCCC
Confidence 55666665 57789999999999876 5543 222 267899999999997 56664432 1 379999999998
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc---CCcceEEEe
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTT 192 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l 192 (430)
.+..+ +...+..+++|+.|+++++. +............+++|++|+++++. ++.+| .++|++|++
T Consensus 132 -~l~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 132 -EITKV---------RKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL 199 (330)
T ss_dssp -CCCBB---------CHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred -ccccc---------CHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEEC
Confidence 55544 33334788999999999864 33211111226778899999998875 44444 346666666
Q ss_pred cCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 272 (430)
++|.+.+..+ .....+++|+.|+++++ .++.+.+..+ ..+++|+.|++++| .+..+|..+.
T Consensus 200 ~~n~l~~~~~--------------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~lp~~l~ 260 (330)
T 1xku_A 200 DGNKITKVDA--------------ASLKGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLA 260 (330)
T ss_dssp TTSCCCEECT--------------GGGTTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTT
T ss_pred CCCcCCccCH--------------HHhcCCCCCCEEECCCC-cCceeChhhc---cCCCCCCEEECCCC-cCccCChhhc
Confidence 6666544321 12344566666666653 4555544444 55566666666664 3445555555
Q ss_pred cCCCCCEEEEccC
Q 014100 273 HLENLATLEVSKC 285 (430)
Q Consensus 273 ~l~~L~~L~l~~c 285 (430)
.+++|+.|+++++
T Consensus 261 ~l~~L~~L~l~~N 273 (330)
T 1xku_A 261 DHKYIQVVYLHNN 273 (330)
T ss_dssp TCSSCCEEECCSS
T ss_pred cCCCcCEEECCCC
Confidence 5566666666554
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-16 Score=163.93 Aligned_cols=134 Identities=19% Similarity=0.092 Sum_probs=84.4
Q ss_pred ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcce
Q 014100 251 ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCV 330 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 330 (430)
++++.++++.+......+.....+++|+.|+++++.....+... .+..+++|++|++++| .++.+.. ....
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N-~L~~l~~-------~~f~ 515 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQC-QLEQLSP-------TAFN 515 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECT-------TTTT
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCC-ccCCcCh-------HHHc
Confidence 34444444433222222334446677888888877655443322 3567888999999887 4444421 1223
Q ss_pred eecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCC-CCceEEecccCCC
Q 014100 331 VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA-PKLNKVKPTEEED 395 (430)
Q Consensus 331 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-~~L~~l~l~~~~~ 395 (430)
.+++|+.|+++++ +++.++.. ....+++|++|+++++......|..+..+ ++|+.+++++++.
T Consensus 516 ~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 516 SLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 3788999999986 67776542 23458899999998875444445556665 5899999977664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-17 Score=159.14 Aligned_cols=232 Identities=14% Similarity=0.136 Sum_probs=178.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..++.+|..+. ++++.|+++++. +..+.... ...+++|++|++++| .+..+.+. .+.++++|++|++++| .
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~i~~~-~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS---FKHLRHLEILQLSRN-HIRTIEIG-AFNGLANLNTLELFDN-R 123 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCC-CCEECTTT---TSSCSSCCEEECCSS-CCCEECGG-GGTTCSSCCEEECCSS-C
T ss_pred CCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH---hhCCCCCCEEECCCC-cCCccChh-hccCCccCCEEECCCC-c
Confidence 55677877653 789999999876 66554322 267899999999997 56665543 3788999999999998 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +...+..+++|++|+++++ .+..++... ...+++|++|++.+|..++.++ .++|++|+
T Consensus 124 l~~~---------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 124 LTTI---------PNGAFVYLSKLKELWLRNN-PIESIPSYA--FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSSC---------CTTTSCSCSSCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCee---------CHhHhhccccCceeeCCCC-cccccCHHH--hhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 6655 5555688999999999986 466664322 6778999999999988887766 46899999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
+++|.+..+. ....+++|+.|+++++ .++.+.+..+ ..+++|+.|+++++......+..+
T Consensus 192 L~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 192 LAMCNLREIP----------------NLTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CTTSCCSSCC----------------CCTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCcccc----------------ccCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCCceeEEChhhh
Confidence 9999877654 3567889999999985 8888877777 889999999999975443334567
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|+++++ .++.++.. .+..+++|+.|++++++
T Consensus 252 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 78999999999986 46666543 35678999999997654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-17 Score=160.18 Aligned_cols=232 Identities=14% Similarity=0.104 Sum_probs=177.2
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+..+|..+. +++++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 64 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~ 134 (452)
T 3zyi_A 64 RGLSEVPQGIP--SNTRYLNLMENN-IQMIQADT---FRHLHHLEVLQLGRN-SIRQIEVGA-FNGLASLNTLELFDN-W 134 (452)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred CCcCccCCCCC--CCccEEECcCCc-CceECHHH---cCCCCCCCEEECCCC-ccCCcChhh-ccCcccCCEEECCCC-c
Confidence 45667776553 689999999876 66543222 267899999999987 566655443 778999999999998 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +...+..+++|++|+++++ .+..++... ...+++|++|++.+|..++.++ .++|++|+
T Consensus 135 l~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 135 LTVI---------PSGAFEYLSKLRELWLRNN-PIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp CSBC---------CTTTSSSCTTCCEEECCSC-CCCEECTTT--TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred CCcc---------ChhhhcccCCCCEEECCCC-CcceeCHhH--HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 6655 5555688999999999986 466664432 6778999999999988887776 46899999
Q ss_pred ecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc
Q 014100 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 271 (430)
+++|.+.++. ....+++|+.|+++++ .++.+.+..+ ..+++|+.|+++++......+..+
T Consensus 203 L~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~ 262 (452)
T 3zyi_A 203 LGMCNIKDMP----------------NLTPLVGLEELEMSGN-HFPEIRPGSF---HGLSSLKKLWVMNSQVSLIERNAF 262 (452)
T ss_dssp CTTSCCSSCC----------------CCTTCTTCCEEECTTS-CCSEECGGGG---TTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCCcccccc----------------cccccccccEEECcCC-cCcccCcccc---cCccCCCEEEeCCCcCceECHHHh
Confidence 9999877654 3567889999999984 7888777766 888999999999975444445567
Q ss_pred ccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|+++++ .++.++.. .+..+++|+.|++++++
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 78899999999987 46666543 35678999999998754
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-16 Score=162.41 Aligned_cols=253 Identities=19% Similarity=0.134 Sum_probs=126.3
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCc
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 131 (430)
+++.|+++++. +..++... .++|++|++++| ++..+++ .+++|++|++++| .+..+ |
T Consensus 41 ~l~~L~ls~n~-L~~lp~~l------~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N-~l~~l---------p 97 (622)
T 3g06_A 41 GNAVLNVGESG-LTTLPDCL------PAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSL---------P 97 (622)
T ss_dssp CCCEEECCSSC-CSCCCSCC------CTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CCSCC---------C
T ss_pred CCcEEEecCCC-cCccChhh------CCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCC-cCCcC---------C
Confidence 46666666544 44333222 256666666665 3444333 3566666666665 34333 2
Q ss_pred CCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccCCCcceec
Q 014100 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 132 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
. .+++|++|+++++ .++.++. .+++|+.|++++|. ++.+| .++|++|++++|.+.++.
T Consensus 98 ~----~l~~L~~L~Ls~N-~l~~l~~------~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~-------- 157 (622)
T 3g06_A 98 V----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP-------- 157 (622)
T ss_dssp C----CCTTCCEEEECSC-CCCCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC--------
T ss_pred C----CCCCCCEEECcCC-cCCCCCC------CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcC--------
Confidence 2 3456666666654 3443321 34566666666553 44444 356666666666554432
Q ss_pred cCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcc
Q 014100 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 289 (430)
..+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+|. .+++|+.|++++| .++
T Consensus 158 ----------~~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l~ 214 (622)
T 3g06_A 158 ----------ALPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNN-RLT 214 (622)
T ss_dssp ----------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCS
T ss_pred ----------CccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCC-ccc
Confidence 12345566666552 444432 22355666666554 3333432 2345556665554 233
Q ss_pred ccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccC
Q 014100 290 NVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 290 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
.++. .+++|+.|+++++ .+..+. ..+++|+.|+++++ .++.++. .+++|++|++++|
T Consensus 215 ~l~~-----~~~~L~~L~Ls~N-~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 215 SLPA-----LPSGLKELIVSGN-RLTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN 271 (622)
T ss_dssp SCCC-----CCTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS
T ss_pred ccCC-----CCCCCCEEEccCC-ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC
Confidence 3331 2355666666554 232221 11455666666554 4444443 1455666666554
Q ss_pred CCCccccCCCcCCCCceEEecccCC
Q 014100 370 PTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 370 ~~l~~l~~~~~~~~~L~~l~l~~~~ 394 (430)
.++.+|..+..+++|+.+++++++
T Consensus 272 -~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 272 -QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred -CCCcCCHHHhhccccCEEEecCCC
Confidence 344555555555666666665543
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=158.23 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=104.7
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
++|++|+++++. +..+. ...++|++|++++| .+..+ |. +.++++|++|++++| .+..+
T Consensus 111 ~~L~~L~l~~n~-l~~l~-------~~~~~L~~L~L~~n-~l~~l-p~--~~~l~~L~~L~l~~N-~l~~l--------- 168 (454)
T 1jl5_A 111 QSLKSLLVDNNN-LKALS-------DLPPLLEYLGVSNN-QLEKL-PE--LQNSSFLKIIDVDNN-SLKKL--------- 168 (454)
T ss_dssp TTCCEEECCSSC-CSCCC-------SCCTTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSCC---------
T ss_pred CCCcEEECCCCc-cCccc-------CCCCCCCEEECcCC-CCCCC-cc--cCCCCCCCEEECCCC-cCccc---------
Confidence 567777776654 33211 11257888888877 45554 32 667888888888887 44444
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccCCCccee
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|.. .++|++|+++++ .++.++ . +..+++|++|++++|. ++.+| +.+|++|++++|.+..+.
T Consensus 169 p~~----~~~L~~L~L~~n-~l~~l~-~---~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp------- 231 (454)
T 1jl5_A 169 PDL----PPSLEFIAAGNN-QLEELP-E---LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP------- 231 (454)
T ss_dssp CCC----CTTCCEEECCSS-CCSSCC-C---CTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC-------
T ss_pred CCC----cccccEEECcCC-cCCcCc-c---ccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc-------
Confidence 222 257888888875 455554 2 6778888888888775 44444 457888888888765433
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccC
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 285 (430)
..+.+++|+.|+++++ .++.++ ..+++|+.|+++++. +..+|.. +++|+.|+++++
T Consensus 232 ---------~~~~l~~L~~L~l~~N-~l~~l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 232 ---------ELQNLPFLTTIYADNN-LLKTLP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp ---------CCTTCTTCCEEECCSS-CCSSCC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred ---------ccCCCCCCCEEECCCC-cCCccc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 2345666666666663 444432 122556666666542 3334332 245555555554
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=157.62 Aligned_cols=265 Identities=15% Similarity=0.101 Sum_probs=144.1
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|++|+++++ .+..++. .+++|++|++++| .+..+ + ...++|++|+++++ .++.+| .
T Consensus 91 ~~L~~L~l~~n-~l~~lp~-----~~~~L~~L~l~~n-~l~~l---------~----~~~~~L~~L~L~~n-~l~~lp-~ 148 (454)
T 1jl5_A 91 PHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKAL---------S----DLPPLLEYLGVSNN-QLEKLP-E 148 (454)
T ss_dssp TTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCC---------C----SCCTTCCEEECCSS-CCSSCC-C
T ss_pred CCCCEEEccCC-cCCcccc-----ccCCCcEEECCCC-ccCcc---------c----CCCCCCCEEECcCC-CCCCCc-c
Confidence 56677777665 4444322 1356777777666 33333 1 11257888888875 455555 2
Q ss_pred cccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccC---CCcceecc-CccccCCcCCCCCCCcEEeccc
Q 014100 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTS---EENFFLTD-QIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~---~~~l~~~~-~~~~~~~~~~~~~~L~~L~L~~ 232 (430)
+..+++|++|+++++. ++.+| +.+|++|++++|.+.++.. ++++...+ ....+-.-....++|+.|++++
T Consensus 149 ---~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 149 ---LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224 (454)
T ss_dssp ---CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred ---cCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC
Confidence 6778888888888774 55555 4578888888887665432 11111111 0000000001224666666666
Q ss_pred CCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+ .++.++ .+ ..+++|+.|+++++ .+..+|. .+++|+.|++++|. +..++. .+++|++|+++++.
T Consensus 225 n-~l~~lp--~~---~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 225 N-ILEELP--EL---QNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSENI 288 (454)
T ss_dssp S-CCSSCC--CC---TTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC
T ss_pred C-cCCccc--cc---CCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCc-ccccCc-----ccCcCCEEECcCCc
Confidence 4 444433 13 56666777777664 3444443 23567777776653 444432 23677777777653
Q ss_pred cchhhhccc-------c-cccCCcc-eeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCC
Q 014100 313 MIEQIIQLQ-------V-GEEAKGC-VVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAP 383 (430)
Q Consensus 313 ~l~~~~~~~-------~-~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~ 383 (430)
+..+.... . ...-... ...++|+.|+++++ .++.++. .+++|++|++++| .++.+|. .++
T Consensus 289 -l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~ 357 (454)
T 1jl5_A 289 -FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---LPQ 357 (454)
T ss_dssp -CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCT
T ss_pred -cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---hhh
Confidence 22211000 0 0000000 01246666776664 4554443 1578999999887 5667777 478
Q ss_pred CceEEecccCCCC
Q 014100 384 KLNKVKPTEEEDG 396 (430)
Q Consensus 384 ~L~~l~l~~~~~~ 396 (430)
+|++++++++...
T Consensus 358 ~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 358 NLKQLHVEYNPLR 370 (454)
T ss_dssp TCCEEECCSSCCS
T ss_pred hccEEECCCCCCC
Confidence 9999999887643
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=155.32 Aligned_cols=252 Identities=13% Similarity=0.108 Sum_probs=126.9
Q ss_pred CCcceeeccccccce---eeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc-Eeecccc
Q 014100 51 RDIKYLQLGHFPRLQ---EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEE 126 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~ 126 (430)
.++++|+++++. +. .++... ..+++|++|+++++.++....|.. +.++++|++|++++| .+. .+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~----- 117 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAI----- 117 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEEC-----
T ss_pred ceEEEEECCCCC-ccCCcccChhH----hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcC-----
Confidence 456666666554 32 222222 456666666666432444333333 556666666666666 333 22
Q ss_pred ccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcc
Q 014100 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENF 206 (430)
Q Consensus 127 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l 206 (430)
|..+ ..+++|++|+++++.-...++.. +..+++|++|++++|.....+|
T Consensus 118 ----p~~~-~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p----------------------- 166 (313)
T 1ogq_A 118 ----PDFL-SQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNRISGAIP----------------------- 166 (313)
T ss_dssp ----CGGG-GGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSCCEEECC-----------------------
T ss_pred ----CHHH-hCCCCCCEEeCCCCccCCcCChH---HhcCCCCCeEECcCCcccCcCC-----------------------
Confidence 2222 55666666666664322233322 4556666666665554211221
Q ss_pred eeccCccccCCcCCCCC-CCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccC
Q 014100 207 FLTDQIQPLFDEKVAFP-QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~-~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 285 (430)
...+.++ +|+.|+++++ .++...+..+ ..++ |+.|+++++......+..+..+++|+.|+++++
T Consensus 167 ----------~~l~~l~~~L~~L~L~~N-~l~~~~~~~~---~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 167 ----------DSYGSFSKLFTSMTISRN-RLTGKIPPTF---ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp ----------GGGGCCCTTCCEEECCSS-EEEEECCGGG---GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred ----------HHHhhhhhcCcEEECcCC-eeeccCChHH---hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 1223344 6666666663 4443333333 3443 666666665444444445556666666666665
Q ss_pred CCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEE
Q 014100 286 HGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV 365 (430)
Q Consensus 286 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~ 365 (430)
.--..++. ...+++|++|+++++.....+ +.....+++|+.|+++++.--..++.. ..+++|++++
T Consensus 232 ~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~~--------p~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~ 297 (313)
T 1ogq_A 232 SLAFDLGK---VGLSKNLNGLDLRNNRIYGTL--------PQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSA 297 (313)
T ss_dssp EECCBGGG---CCCCTTCCEEECCSSCCEECC--------CGGGGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGG
T ss_pred ceeeecCc---ccccCCCCEEECcCCcccCcC--------ChHHhcCcCCCEEECcCCcccccCCCC---ccccccChHH
Confidence 42222221 345566777777665321111 112233566777777665322234432 2366777777
Q ss_pred eccCCCCcc
Q 014100 366 VRQCPTMKI 374 (430)
Q Consensus 366 l~~c~~l~~ 374 (430)
+.+++.+..
T Consensus 298 l~~N~~lc~ 306 (313)
T 1ogq_A 298 YANNKCLCG 306 (313)
T ss_dssp TCSSSEEES
T ss_pred hcCCCCccC
Confidence 776665543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-16 Score=156.81 Aligned_cols=221 Identities=17% Similarity=0.201 Sum_probs=172.6
Q ss_pred cceeeeEeecccccccCccchhhhhhh-hcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCY-EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++++.+.+ .++.+..++ ..+..+++|++|+++++. +..+.... ...+++|++|++++| .+..++
T Consensus 64 ~~l~~L~L----------~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~ 128 (440)
T 3zyj_A 64 TNTRLLNL----------HENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGA---FNGLANLNTLELFDN-RLTTIP 128 (440)
T ss_dssp TTCSEEEC----------CSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGG---GTTCSSCCEEECCSS-CCSSCC
T ss_pred CCCcEEEc----------cCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhh---ccCCccCCEEECCCC-cCCeeC
Confidence 45777777 335555655 457889999999999886 66544322 257899999999998 677655
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+. .+.++++|++|++++| .+..+ +...+..+++|++|++.++..+..++... +..+++|++|++++|
T Consensus 129 ~~-~~~~l~~L~~L~L~~N-~i~~~---------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 129 NG-AFVYLSKLKELWLRNN-PIESI---------PSYAFNRIPSLRRLDLGELKRLSYISEGA--FEGLSNLRYLNLAMC 195 (440)
T ss_dssp TT-TSCSCSSCCEEECCSC-CCCEE---------CTTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCSSCCEEECTTS
T ss_pred Hh-HhhccccCceeeCCCC-ccccc---------CHHHhhhCcccCEeCCCCCCCcceeCcch--hhcccccCeecCCCC
Confidence 43 3778999999999998 56666 55556889999999999988888775432 677999999999998
Q ss_pred CCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccc
Q 014100 177 PDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN 252 (430)
Q Consensus 177 ~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~ 252 (430)
. ++.+| .++|+.|++++|.+.+..+ .....+++|+.|++++ +.++.+.+..+ ..+++
T Consensus 196 ~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~-n~l~~~~~~~~---~~l~~ 256 (440)
T 3zyj_A 196 N-LREIPNLTPLIKLDELDLSGNHLSAIRP--------------GSFQGLMHLQKLWMIQ-SQIQVIERNAF---DNLQS 256 (440)
T ss_dssp C-CSSCCCCTTCSSCCEEECTTSCCCEECT--------------TTTTTCTTCCEEECTT-CCCCEECTTSS---TTCTT
T ss_pred c-CccccccCCCcccCEEECCCCccCccCh--------------hhhccCccCCEEECCC-CceeEEChhhh---cCCCC
Confidence 5 56665 5689999999998776541 3356789999999998 48888877777 88999
Q ss_pred ccEEeeccCcccccccCC-cccCCCCCEEEEccCC
Q 014100 253 LIRLKISECSKLQKLVTP-SWHLENLATLEVSKCH 286 (430)
Q Consensus 253 L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 286 (430)
|+.|+++++ .++.+++. +..+++|+.|++++++
T Consensus 257 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 257 LVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 999999997 56666544 5678999999998865
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=161.38 Aligned_cols=257 Identities=17% Similarity=0.094 Sum_probs=192.5
Q ss_pred cceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCc
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 97 (430)
.++++|.+ .++.++.+|..+. ++|++|+++++. ++.++ ..+++|++|++++| .+..++.
T Consensus 40 ~~l~~L~l----------s~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp-------~~l~~L~~L~Ls~N-~l~~lp~ 98 (622)
T 3g06_A 40 NGNAVLNV----------GESGLTTLPDCLP--AHITTLVIPDNN-LTSLP-------ALPPELRTLEVSGN-QLTSLPV 98 (622)
T ss_dssp HCCCEEEC----------CSSCCSCCCSCCC--TTCSEEEECSCC-CSCCC-------CCCTTCCEEEECSC-CCSCCCC
T ss_pred CCCcEEEe----------cCCCcCccChhhC--CCCcEEEecCCC-CCCCC-------CcCCCCCEEEcCCC-cCCcCCC
Confidence 34777777 4456677877664 899999999886 66432 25789999999998 5666544
Q ss_pred hhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 98 ANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+++|++|++++| .+..+ |. .+++|+.|+++++ .++.++. .+++|++|++++|.
T Consensus 99 -----~l~~L~~L~Ls~N-~l~~l---------~~----~l~~L~~L~L~~N-~l~~lp~------~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 99 -----LPPGLLELSIFSN-PLTHL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ 152 (622)
T ss_dssp -----CCTTCCEEEECSC-CCCCC---------CC----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC
T ss_pred -----CCCCCCEEECcCC-cCCCC---------CC----CCCCcCEEECCCC-CCCcCCC------CCCCCCEEECcCCc
Confidence 5899999999998 55554 22 5689999999986 4666643 35899999999985
Q ss_pred Cccccc--CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccE
Q 014100 178 DMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR 255 (430)
Q Consensus 178 ~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~ 255 (430)
++.+| +.+|+.|++++|.+..+. ..+++|+.|+++++ .++.++ ..+++|+.
T Consensus 153 -l~~l~~~~~~L~~L~L~~N~l~~l~------------------~~~~~L~~L~Ls~N-~l~~l~-------~~~~~L~~ 205 (622)
T 3g06_A 153 -LASLPALPSELCKLWAYNNQLTSLP------------------MLPSGLQELSVSDN-QLASLP-------TLPSELYK 205 (622)
T ss_dssp -CSCCCCCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCE
T ss_pred -CCCcCCccCCCCEEECCCCCCCCCc------------------ccCCCCcEEECCCC-CCCCCC-------CccchhhE
Confidence 66665 678999999999877643 34689999999984 676654 23478999
Q ss_pred EeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeeccc
Q 014100 256 LKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEEL 335 (430)
Q Consensus 256 L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 335 (430)
|.+++| .+..+|. .+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+. . .+++|
T Consensus 206 L~L~~N-~l~~l~~---~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp--------~---~~~~L 263 (622)
T 3g06_A 206 LWAYNN-RLTSLPA---LPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLP--------M---LPSGL 263 (622)
T ss_dssp EECCSS-CCSSCCC---CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCC--------C---CCTTC
T ss_pred EECcCC-cccccCC---CCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCC--------c---ccccC
Confidence 999986 5666654 3578999999886 566665 45689999999886 455443 1 37889
Q ss_pred ceeecccCCCCceecCCCcccCCCCccEEEeccCCCCc
Q 014100 336 GYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 336 ~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
+.|++++| .++.++. ....+++|++|++++++...
T Consensus 264 ~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 264 LSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred cEEeCCCC-CCCcCCH--HHhhccccCEEEecCCCCCC
Confidence 99999986 6777765 34568999999999886543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-16 Score=156.36 Aligned_cols=221 Identities=18% Similarity=0.221 Sum_probs=173.0
Q ss_pred cceeeeEeecccccccCccchhhhhh-hhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKC-YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++|+++.+ .++.+..+ +..+..+++|++|+++++. +..+.... ...+++|++|+++++ .+..++
T Consensus 75 ~~l~~L~L----------~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~ 139 (452)
T 3zyi_A 75 SNTRYLNL----------MENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGA---FNGLASLNTLELFDN-WLTVIP 139 (452)
T ss_dssp TTCSEEEC----------CSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCSBCC
T ss_pred CCccEEEC----------cCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhh---ccCcccCCEEECCCC-cCCccC
Confidence 46788887 34555555 3557889999999999886 66544222 257899999999998 566654
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecC
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 176 (430)
+ ..+.++++|++|++++| .+..+ +...+..+++|++|+++++..++.++... ...+++|++|++++|
T Consensus 140 ~-~~~~~l~~L~~L~L~~N-~l~~~---------~~~~~~~l~~L~~L~l~~~~~l~~i~~~~--~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 140 S-GAFEYLSKLRELWLRNN-PIESI---------PSYAFNRVPSLMRLDLGELKKLEYISEGA--FEGLFNLKYLNLGMC 206 (452)
T ss_dssp T-TTSSSCTTCCEEECCSC-CCCEE---------CTTTTTTCTTCCEEECCCCTTCCEECTTT--TTTCTTCCEEECTTS
T ss_pred h-hhhcccCCCCEEECCCC-Cccee---------CHhHHhcCCcccEEeCCCCCCccccChhh--ccCCCCCCEEECCCC
Confidence 4 34778999999999998 56666 55556899999999999988888876432 678999999999998
Q ss_pred CCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccc
Q 014100 177 PDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN 252 (430)
Q Consensus 177 ~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~ 252 (430)
. ++.++ .++|++|++++|.+.+..+ .....+++|+.|+++++ .++.+.+..+ ..+++
T Consensus 207 ~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~ 267 (452)
T 3zyi_A 207 N-IKDMPNLTPLVGLEELEMSGNHFPEIRP--------------GSFHGLSSLKKLWVMNS-QVSLIERNAF---DGLAS 267 (452)
T ss_dssp C-CSSCCCCTTCTTCCEEECTTSCCSEECG--------------GGGTTCTTCCEEECTTS-CCCEECTTTT---TTCTT
T ss_pred c-ccccccccccccccEEECcCCcCcccCc--------------ccccCccCCCEEEeCCC-cCceECHHHh---cCCCC
Confidence 5 55555 5689999999999876541 23567899999999984 7888877777 88999
Q ss_pred ccEEeeccCcccccccCC-cccCCCCCEEEEccCC
Q 014100 253 LIRLKISECSKLQKLVTP-SWHLENLATLEVSKCH 286 (430)
Q Consensus 253 L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 286 (430)
|+.|+++++ .++.+++. +..+++|+.|++++++
T Consensus 268 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 268 LVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 999999997 56666644 5678999999999865
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.2e-17 Score=152.10 Aligned_cols=248 Identities=15% Similarity=0.125 Sum_probs=174.8
Q ss_pred CCccEEEeecCcCCCc--CCchhHHhhcCCCCEEEEecCCCcc-EeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 79 NNLRHLVVDDCTNMLS--AIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.+++.|+++++ .+.. ..|.. +.++++|++|+++++..+. .+ |..+ ..+++|++|+++++.-...+
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~---------p~~l-~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPI---------PPAI-AKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEESCC---------CGGG-GGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCcccccC---------ChhH-hcCCCCCEEECcCCeeCCcC
Confidence 68999999987 4554 33433 7789999999999633443 23 4444 78889999999886533345
Q ss_pred ccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCC
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 235 (430)
|.. +..+++|++|+++++.....+| ...+.+++|++|+++++ .
T Consensus 118 p~~---~~~l~~L~~L~Ls~N~l~~~~p---------------------------------~~~~~l~~L~~L~L~~N-~ 160 (313)
T 1ogq_A 118 PDF---LSQIKTLVTLDFSYNALSGTLP---------------------------------PSISSLPNLVGITFDGN-R 160 (313)
T ss_dssp CGG---GGGCTTCCEEECCSSEEESCCC---------------------------------GGGGGCTTCCEEECCSS-C
T ss_pred CHH---HhCCCCCCEEeCCCCccCCcCC---------------------------------hHHhcCCCCCeEECcCC-c
Confidence 443 6677888888887764211111 23466899999999985 6
Q ss_pred ceeecccCchhhhhcc-cccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccc
Q 014100 236 VQHLWKENDESNKAFA-NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++...+..+ ..++ +|+.|+++++.....+|..+..++ |+.|+++++. +...... .+..+++|+.|+++++...
T Consensus 161 l~~~~p~~l---~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 161 ISGAIPDSY---GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASV-LFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CEEECCGGG---GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGG-GCCTTSCCSEEECCSSEEC
T ss_pred ccCcCCHHH---hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCH-HHhcCCCCCEEECCCCcee
Confidence 774445555 6676 999999999866657777777776 9999999875 4433222 3578999999999987532
Q ss_pred hhhhcccccccCCcceeecccceeecccCCCCc-eecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccC
Q 014100 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT-SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~ 393 (430)
..+. ....+++|+.|+++++. ++ .++. ....+++|++|+++++.....+|.. ..+++|+.+++.++
T Consensus 235 ~~~~---------~~~~l~~L~~L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 235 FDLG---------KVGLSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CBGG---------GCCCCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred eecC---------cccccCCCCEEECcCCc-ccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 2221 12347899999999874 54 4554 3445899999999998665577776 67889999999776
Q ss_pred C
Q 014100 394 E 394 (430)
Q Consensus 394 ~ 394 (430)
+
T Consensus 302 ~ 302 (313)
T 1ogq_A 302 K 302 (313)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-16 Score=147.95 Aligned_cols=256 Identities=11% Similarity=0.097 Sum_probs=160.2
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|++|+++++ .+..+++.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .++.++.
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISNSD-LQRCVNLQALVLTSN-GINTI---------EEDSFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred cccCcEEECCCC-cCcccCHHH-hccCCCCCEEECCCC-ccCcc---------CHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence 456777777665 455443322 556677777777766 44444 2222356666777776654 3333322
Q ss_pred CcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCce
Q 014100 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 237 (430)
.. +..+++|++|+++++ .+..+.. ......+++|+.|+++++..++
T Consensus 118 ~~--~~~l~~L~~L~L~~n-------------------~l~~l~~-------------~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 118 SW--FKPLSSLTFLNLLGN-------------------PYKTLGE-------------TSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp HH--HTTCTTCSEEECTTC-------------------CCSSSCS-------------SCSCTTCTTCCEEEEEESSSCC
T ss_pred hH--hCCCccCCEEECCCC-------------------CCcccCc-------------hhhhccCCCCcEEECCCCcccc
Confidence 10 234555555555554 3332220 0124568899999999876678
Q ss_pred eecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhh
Q 014100 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 317 (430)
.+.+..+ ..+++|+.|+++++......|..+..+++|+.|+++++. +..++.. +...+++|++|+++++. +..+
T Consensus 164 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~~L~~L~L~~n~-l~~~ 237 (353)
T 2z80_A 164 KIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI-FVDVTSSVECLELRDTD-LDTF 237 (353)
T ss_dssp EECTTTT---TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH-HHHHTTTEEEEEEESCB-CTTC
T ss_pred ccCHHHc---cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh-hhhhcccccEEECCCCc-cccc
Confidence 8766666 788999999999986555556777889999999998875 5555432 34458899999998874 3332
Q ss_pred hcccccccCCcceeecccceeecccCCCCc-----eecCCCcccCCCCccEEEeccCCCCccccCCC-cCCCCceEEecc
Q 014100 318 IQLQVGEEAKGCVVFEELGYLGLDCLPSLT-----SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPT 391 (430)
Q Consensus 318 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~l~l~ 391 (430)
.... . ......+.++.+++.++. +. .++. ....+++|++|++++| .++.+|... ..+++|++++++
T Consensus 238 ~~~~---l-~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 238 HFSE---L-STGETNSLIKKFTFRNVK-ITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCC----------CCCCCCEEEEESCB-CCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cccc---c-ccccccchhhcccccccc-ccCcchhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 2100 0 011224556677776652 22 2332 2235899999999987 666888875 689999999997
Q ss_pred cCC
Q 014100 392 EEE 394 (430)
Q Consensus 392 ~~~ 394 (430)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 775
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=154.03 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=170.5
Q ss_pred chhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 37 NSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 37 ~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
++.++.+|..+. ++|++|+++++. +..+.... ...+++|++|+++++ .+....+.. +.++++|++|++++|
T Consensus 40 ~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n- 110 (353)
T 2z80_A 40 SGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSD---LQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN- 110 (353)
T ss_dssp STTCSSCCTTCC--TTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-
T ss_pred CCCccccccccc--ccCcEEECCCCc-CcccCHHH---hccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-
Confidence 356677777654 589999998776 66554322 267889999999887 566654433 677889999999887
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEE
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHV 190 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L 190 (430)
.+..+ +...+..+++|++|+++++ .++.++... ....+++|++|++++|..++.++ .++|++|
T Consensus 111 ~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 111 YLSNL---------SSSWFKPLSSLTFLNLLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCSSC---------CHHHHTTCTTCSEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred cCCcC---------CHhHhCCCccCCEEECCCC-CCcccCchh-hhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 45444 3333467889999999875 455554411 16678899999999886666554 4578889
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-C
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-T 269 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~ 269 (430)
++++|.+.+..+ ...+.+++|++|+++++ .++.++...+ ..+++|+.|+++++. ++.++ .
T Consensus 180 ~l~~n~l~~~~~--------------~~l~~l~~L~~L~l~~n-~l~~~~~~~~---~~~~~L~~L~L~~n~-l~~~~~~ 240 (353)
T 2z80_A 180 EIDASDLQSYEP--------------KSLKSIQNVSHLILHMK-QHILLLEIFV---DVTSSVECLELRDTD-LDTFHFS 240 (353)
T ss_dssp EEEETTCCEECT--------------TTTTTCSEEEEEEEECS-CSTTHHHHHH---HHTTTEEEEEEESCB-CTTCCCC
T ss_pred ECCCCCcCccCH--------------HHHhccccCCeecCCCC-ccccchhhhh---hhcccccEEECCCCc-ccccccc
Confidence 998888765431 23566788999999885 5555443322 567899999998874 33322 1
Q ss_pred C---cccCCCCCEEEEccCCCccc-----cccccccccccCccEEEEcccccchhhhcccccccCCc-ceeecccceeec
Q 014100 270 P---SWHLENLATLEVSKCHGLIN-----VLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG-CVVFEELGYLGL 340 (430)
Q Consensus 270 ~---~~~l~~L~~L~l~~c~~l~~-----~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~~L~~L~l 340 (430)
. ....+.++.+++.++. +.+ ++. .+..+++|++|+++++ .+..+. .. ...+++|+.|++
T Consensus 241 ~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~--------~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 241 ELSTGETNSLIKKFTFRNVK-ITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVP--------DGIFDRLTSLQKIWL 308 (353)
T ss_dssp ------CCCCCCEEEEESCB-CCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCC--------TTTTTTCTTCCEEEC
T ss_pred ccccccccchhhcccccccc-ccCcchhhhHH--HHhcccCCCEEECCCC-CCCccC--------HHHHhcCCCCCEEEe
Confidence 1 2245667888887753 222 221 3466888999999886 344432 11 133788899999
Q ss_pred ccCC
Q 014100 341 DCLP 344 (430)
Q Consensus 341 ~~c~ 344 (430)
.+++
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 8875
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-18 Score=177.90 Aligned_cols=253 Identities=19% Similarity=0.182 Sum_probs=140.2
Q ss_pred cccccceeeeEeeccc----c-----cccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEE
Q 014100 14 IVSTPKLHEVQVKGEL----R-----RWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHL 84 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~----~-----~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L 84 (430)
+.+||+|+++.+.+.. . .|.+.....+..+. ..+++|++|+++++. +.+..... ....+++|++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~---~~~~~L~~L~L~~~~-~~~~~~~~--l~~~~~~L~~L 135 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS---SSYTWLEEIRLKRMV-VTDDCLEL--IAKSFKNFKVL 135 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH--HHHHCTTCCEE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHH---HhCCCCCeEEeeCcE-EcHHHHHH--HHHhCCCCcEE
Confidence 4568999999998731 1 23333333344443 468899999999886 44211111 01258999999
Q ss_pred EeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccc-cccccccCccccc
Q 014100 85 VVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP-KLKRFCNFTENII 163 (430)
Q Consensus 85 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~~~ 163 (430)
++++|..+.......++.++++|++|++++|. +.... ...+.. +...+++|++|+++++. .+........ ..
T Consensus 136 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~-~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~l~~l-~~ 208 (594)
T 2p1m_B 136 VLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS-GHWLSH----FPDTYTSLVSLNISCLASEVSFSALERL-VT 208 (594)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC-GGGGGG----SCTTCCCCCEEECTTCCSCCCHHHHHHH-HH
T ss_pred eCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc-hHHHHH----HhhcCCcCcEEEecccCCcCCHHHHHHH-HH
Confidence 99999765543333446689999999999985 43321 111111 23467899999999875 1211100000 34
Q ss_pred CCCCccEEEEecCCCccccc-----CCcceEEEecCCCCC--------------cccCCCcce-ecc-CccccCCcCCCC
Q 014100 164 EMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPE--------------KLTSEENFF-LTD-QIQPLFDEKVAF 222 (430)
Q Consensus 164 ~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~--------------~~~~~~~l~-~~~-~~~~~~~~~~~~ 222 (430)
.+++|++|++.+|..++.++ .++|++|.++++... ....++.+. ..+ +...+......+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 57999999999987666654 568888887655310 001111110 000 000000111245
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEE
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 282 (430)
++|++|++++|. ++...... ....+++|++|++.+|..-..++.....+++|++|++
T Consensus 289 ~~L~~L~L~~~~-l~~~~l~~--~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 289 SRLTTLNLSYAT-VQSYDLVK--LLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp TTCCEEECTTCC-CCHHHHHH--HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCEEEccCCC-CCHHHHHH--HHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence 778888887764 44321110 1145677777777766211122222224566666666
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-17 Score=152.96 Aligned_cols=221 Identities=16% Similarity=0.181 Sum_probs=108.0
Q ss_pred chhhhhhhhcc-cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 37 NSTIQKCYEEM-IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 37 ~~~~~~l~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
.+.+...+..+ ..+++|++|+++++. +..+... ....+++|++|++++| .+...++ +..+++|++|++++|
T Consensus 19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~---~~~~l~~L~~L~Ls~n-~l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 19 DSSLKQALASLRQSAWNVKELDLSGNP-LSQISAA---DLAPFTKLELLNLSSN-VLYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp TTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHH---HHTTCTTCCEEECTTS-CCEEEEE---ETTCTTCCEEECCSS
T ss_pred ccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHH---HhhCCCcCCEEECCCC-cCCcchh---hhhcCCCCEEECcCC
Confidence 34455444433 345577777777764 4432211 1146777777777776 3444333 556777777777776
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceE
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVH 189 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~ 189 (430)
.+..+ ...++|++|+++++ .+..++ ...+++|++|+++++. ++.++ .++|++
T Consensus 91 -~l~~l--------------~~~~~L~~L~l~~n-~l~~~~-----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 91 -YVQEL--------------LVGPSIETLHAANN-NISRVS-----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp -EEEEE--------------EECTTCCEEECCSS-CCSEEE-----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEE
T ss_pred -ccccc--------------cCCCCcCEEECCCC-ccCCcC-----ccccCCCCEEECCCCC-CCCccchhhhccCCCCE
Confidence 44444 23367777777764 344332 2235666666666654 22222 234555
Q ss_pred EEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc
Q 014100 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV 268 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 268 (430)
|++++|.+.+... ... ..+++|+.|+++++ .++.++.. ..+++|+.|+++++ .++.++
T Consensus 149 L~Ls~N~l~~~~~--------------~~~~~~l~~L~~L~L~~N-~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~l~ 207 (317)
T 3o53_A 149 LDLKLNEIDTVNF--------------AELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMG 207 (317)
T ss_dssp EECTTSCCCEEEG--------------GGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSS-CCCEEC
T ss_pred EECCCCCCCcccH--------------HHHhhccCcCCEEECCCC-cCcccccc-----cccccCCEEECCCC-cCCcch
Confidence 5555554433220 001 12345555555542 34443211 22445555555543 333344
Q ss_pred CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 269 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
+.+..+++|+.|+++++ .++.++. .+..+++|+.|+++++
T Consensus 208 ~~~~~l~~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGN 247 (317)
T ss_dssp GGGGGGTTCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTC
T ss_pred hhhcccCcccEEECcCC-cccchhh--HhhcCCCCCEEEccCC
Confidence 44444455555555443 2333332 1234445555555443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-16 Score=143.90 Aligned_cols=215 Identities=16% Similarity=0.089 Sum_probs=125.7
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.++.+|..+ .++|++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++|..+
T Consensus 22 ~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 22 GLQAVPVGI--PAASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CCSSCCTTC--CTTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTC
T ss_pred CcccCCcCC--CCCceEEEeeCCc-CCccCHHH---cccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCc
Confidence 344555433 3567777777655 55433221 245677777777765 445443332 556777777777776444
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCC
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|+++++. +..++.. .+..+++|++|+++++. +.
T Consensus 94 ~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~-------------------l~ 142 (285)
T 1ozn_A 94 RSV---------DPATFHGLGRLHTLHLDRCG-LQELGPG--LFRGLAALQYLYLQDNA-------------------LQ 142 (285)
T ss_dssp CCC---------CTTTTTTCTTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECCSSC-------------------CC
T ss_pred ccc---------CHHHhcCCcCCCEEECCCCc-CCEECHh--HhhCCcCCCEEECCCCc-------------------cc
Confidence 444 22223566677777776653 3333211 13445556666555543 22
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCC
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLA 278 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~ 278 (430)
.... ...+.+++|+.|+++++ .++.++...+ ..+++|+.|+++++......|..+..+++|+
T Consensus 143 ~~~~--------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 204 (285)
T 1ozn_A 143 ALPD--------------DTFRDLGNLTHLFLHGN-RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204 (285)
T ss_dssp CCCT--------------TTTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ccCH--------------hHhccCCCccEEECCCC-cccccCHHHh---cCccccCEEECCCCcccccCHhHccCccccc
Confidence 2210 12355678888888874 6777665555 6778888888888654444456667778888
Q ss_pred EEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 279 TLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 279 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.|+++++. +..++.. .+..+++|++|++++++
T Consensus 205 ~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 205 TLYLFANN-LSALPTE-ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSC-CSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred EeeCCCCc-CCcCCHH-HcccCcccCEEeccCCC
Confidence 88887763 5544432 24567788888887754
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=155.73 Aligned_cols=241 Identities=13% Similarity=0.093 Sum_probs=135.7
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|++|++++| .+...++.. +.++++|++|++++| .+.... . +..+++|++|+++++. ++.+
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~~---------~--~~~l~~L~~L~Ls~n~-l~~l- 95 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETL---------D--LESLSTLRTLDLNNNY-VQEL- 95 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHHH-HTTCTTCCEEECTTS-CCEEEE---------E--ETTCTTCCEEECCSSE-EEEE-
T ss_pred cCCCCCEEECcCC-ccCcCCHHH-hhCCCcCCEEECCCC-cCCcch---------h--hhhcCCCCEEECcCCc-cccc-
Confidence 4678999999887 566654433 778899999999888 454442 1 3677888888888763 4443
Q ss_pred cCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccC
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 233 (430)
...++|++|++++|. ++.++ .++|++|++++|.+.+..+ ...+.+++|+.|+++++
T Consensus 96 ------~~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 96 ------LVGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp ------EECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGG--------------BCTGGGSSEEEEECTTS
T ss_pred ------cCCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccc--------------hhhhccCCCCEEECCCC
Confidence 234778888887765 33333 3456667776666554331 12334566677777663
Q ss_pred CCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccccc
Q 014100 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.++...+..+ ...+++|+.|+++++. ++.++.. ..+++|+.|+++++ .+..++.. +..+++|++|+++++ .
T Consensus 155 -~l~~~~~~~~--~~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~ 225 (317)
T 3o53_A 155 -EIDTVNFAEL--AASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-K 225 (317)
T ss_dssp -CCCEEEGGGG--GGGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-C
T ss_pred -CCCcccHHHH--hhccCcCCEEECCCCc-Ccccccc-cccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-c
Confidence 5555433322 0345666666666653 4444322 24666666666664 34444332 445666666666664 2
Q ss_pred chhhhcccccccCCcceeecccceeecccCCCC-ceecCCCcccCCCCccEEEeccCCCCc
Q 014100 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
+..+. .....+++|+.|++.+++-. ..++. ....+++|+.+++.++..++
T Consensus 226 l~~l~--------~~~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 226 LVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CCEEC--------TTCCCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHHHH
T ss_pred ccchh--------hHhhcCCCCCEEEccCCCccCcCHHH--HHhccccceEEECCCchhcc
Confidence 33221 11223556666666655432 11211 22235556666665554443
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-15 Score=155.68 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=95.0
Q ss_pred ceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCc
Q 014100 19 KLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 19 ~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 97 (430)
+++++.+ -.+.++.++. .+..+++|++|+++++. ++.+..+. ...+++|++|++++| .+..+++
T Consensus 53 ~~~~LdL----------s~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~---f~~L~~L~~L~Ls~N-~l~~l~~ 117 (635)
T 4g8a_A 53 STKNLDL----------SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGN-PIQSLAL 117 (635)
T ss_dssp TCCEEEC----------TTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCCEECG
T ss_pred CCCEEEe----------eCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhH---hcCCCCCCEEEccCC-cCCCCCH
Confidence 5777777 4466777774 47788999999999876 77655433 256889999999987 5776554
Q ss_pred hhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 98 ANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
..+.++++|++|++++| .+..+ +...+..+++|++|+++++. +..+..... ...+++|++|+++++.
T Consensus 118 -~~f~~L~~L~~L~Ls~N-~l~~l---------~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 118 -GAFSGLSSLQKLVAVET-NLASL---------ENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp -GGGTTCTTCCEEECTTS-CCCCS---------TTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred -HHhcCCCCCCEEECCCC-cCCCC---------ChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCcc
Confidence 34788999999999988 55555 45545888999999998863 443321111 6678899999998765
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-17 Score=171.23 Aligned_cols=355 Identities=12% Similarity=0.049 Sum_probs=192.7
Q ss_pred cccccceeeeEeeccc---------ccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCC-ccE
Q 014100 14 IVSTPKLHEVQVKGEL---------RRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNN-LRH 83 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~---------~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-L~~ 83 (430)
..++|+|+++.+.+.. ..|.+.....+..+ ...+++|++|+++++. +.+..... ....+++ |++
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~-i~~~~~~~--l~~~~~~~L~~ 142 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI---SNNLRQLKSVHFRRMI-VSDLDLDR--LAKARADDLET 142 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH---HHHCTTCCEEEEESCB-CCHHHHHH--HHHHHGGGCCE
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHH---HhhCCCCCeEEeeccE-ecHHHHHH--HHHhccccCcE
Confidence 4568999999997731 12333333333333 2368999999999885 44211000 0012555 999
Q ss_pred EEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccc----cccccCc
Q 014100 84 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKL----KRFCNFT 159 (430)
Q Consensus 84 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l----~~~~~~~ 159 (430)
|++++|..+.......+..++++|++|++++|. +.... .+++. .+...+++|++|+++++..- ..++..
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~-~~~l~----~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~- 215 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKD-GKWLH----ELAQHNTSLEVLNFYMTEFAKISPKDLETI- 215 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCC-SHHHH----HHHHHCCCCCEEECTTCCCSSCCHHHHHHH-
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcc-hhHHH----HHHhcCCCccEEEeeccCCCccCHHHHHHH-
Confidence 999998643322222345689999999999983 22110 00000 01246788888888765321 122111
Q ss_pred ccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCC-c-------cc---CCCcceecc-CccccCCcCCCC
Q 014100 160 ENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPE-K-------LT---SEENFFLTD-QIQPLFDEKVAF 222 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~-~-------~~---~~~~l~~~~-~~~~~~~~~~~~ 222 (430)
...+++|++|++.+|. +..++ .++|++|.+++.... . .. .++.+.+.+ ....+......+
T Consensus 216 --~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 292 (592)
T 3ogk_B 216 --ARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA 292 (592)
T ss_dssp --HHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred --HhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence 4567888888888875 33333 567888888653211 0 00 111111110 001111123345
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEcc----------CCCccccc
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK----------CHGLINVL 292 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~----------c~~l~~~~ 292 (430)
++|++|++++|. ++..... .....+++|+.|++.++..-..++.....+++|++|++++ |+.+++..
T Consensus 293 ~~L~~L~Ls~~~-l~~~~~~--~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 293 AQIRKLDLLYAL-LETEDHC--TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGCCEEEETTCC-CCHHHHH--HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred CCCcEEecCCCc-CCHHHHH--HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 677777777764 3332111 1115567777777764322223333334567788888874 66665443
Q ss_pred cccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeeccc---CCCCceecCC----CcccCCCCccEEE
Q 014100 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDC---LPSLTSFCLG----NYALEFPSLEHVV 365 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~---c~~l~~~~~~----~~~~~~~~L~~L~ 365 (430)
.......+++|++|++ .|..+.+..... ....+++|+.|++.+ |+.+++.+.. .....+++|++|+
T Consensus 370 ~~~l~~~~~~L~~L~l-~~~~l~~~~~~~------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 370 LIALAQGCQELEYMAV-YVSDITNESLES------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp HHHHHHHCTTCSEEEE-EESCCCHHHHHH------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhhCccCeEEEe-ecCCccHHHHHH------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 3223456788888888 445544332110 111267888888874 5566654221 0123488999999
Q ss_pred eccCCC-Ccc--ccCCCcCCCCceEEecccCC
Q 014100 366 VRQCPT-MKI--FSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 366 l~~c~~-l~~--l~~~~~~~~~L~~l~l~~~~ 394 (430)
+.+|.. ++. +......+++|+++++.++.
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 987753 221 11112347889999997665
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=143.10 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=79.0
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC--chhHHhhcCCCCEEEEecC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c 115 (430)
..++.+|..+ .++|++|+++++. +..++... ...+++|++|+++++ .+.... +.. +.++++|++|++++|
T Consensus 17 ~~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 17 KGLTSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLDLSFN 88 (306)
T ss_dssp SCCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEECCSC
T ss_pred CCcccCCCCC--CCCCCEEECCCCc-cCccCHhH---hhccccCCEEECCCC-ccCcccCcccc-cccccccCEEECCCC
Confidence 4456676654 3689999999876 65544322 257889999999887 444322 233 556899999999988
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+..+ |.. +..+++|++|+++++ .+..++... ....+++|++|++++|.
T Consensus 89 -~i~~l---------~~~-~~~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 89 -GVITM---------SSN-FLGLEQLEHLDFQHS-NLKQMSEFS-VFLSLRNLIYLDISHTH 137 (306)
T ss_dssp -SEEEE---------EEE-EETCTTCCEEECTTS-EEESSTTTT-TTTTCTTCCEEECTTSC
T ss_pred -ccccC---------hhh-cCCCCCCCEEECCCC-cccccccch-hhhhccCCCEEECCCCc
Confidence 45555 333 367889999999875 344443211 15677888888887765
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=145.82 Aligned_cols=236 Identities=16% Similarity=0.152 Sum_probs=140.5
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhhc-ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ .++|+++.+ .++.+..++.. +..+++|++|+++++. +..+.... .....+++|++|+
T Consensus 19 l~~ip~~~--~~~l~~L~L----------~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~~~~~~L~~L~ 84 (306)
T 2z66_A 19 LTSVPTGI--PSSATRLEL----------ESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCS-QSDFGTTSLKYLD 84 (306)
T ss_dssp CSSCCSCC--CTTCCEEEC----------CSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEE-HHHHSCSCCCEEE
T ss_pred cccCCCCC--CCCCCEEEC----------CCCccCccCHhHhhccccCCEEECCCCc-cCcccCcc-cccccccccCEEE
Confidence 44455443 357999988 44556677765 5789999999999876 55321000 1114589999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcC-CCcccccccceeeccccccccccccCcccccC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE-HIGPLFPKLFELTLMDLPKLKRFCNFTENIIE 164 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 164 (430)
+++| .+..+++. +.++++|++|++++| .+..+ +. ..+..+++|++|+++++. +...... .+..
T Consensus 85 Ls~n-~i~~l~~~--~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~ 148 (306)
T 2z66_A 85 LSFN-GVITMSSN--FLGLEQLEHLDFQHS-NLKQM---------SEFSVFLSLRNLIYLDISHTH-TRVAFNG--IFNG 148 (306)
T ss_dssp CCSC-SEEEEEEE--EETCTTCCEEECTTS-EEESS---------TTTTTTTTCTTCCEEECTTSC-CEECSTT--TTTT
T ss_pred CCCC-ccccChhh--cCCCCCCCEEECCCC-ccccc---------ccchhhhhccCCCEEECCCCc-CCccchh--hccc
Confidence 9998 45554433 668999999999998 44433 22 334788999999999874 3333221 1567
Q ss_pred CCCccEEEEecCCCcc-cccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccC
Q 014100 165 MPELRYLAIENCPDME-TFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN 243 (430)
Q Consensus 165 l~~L~~L~l~~c~~l~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 243 (430)
+++|++|+++++.... ..+ .....+++|+.|+++++ .++.+.+..
T Consensus 149 l~~L~~L~l~~n~l~~~~~~---------------------------------~~~~~l~~L~~L~Ls~n-~l~~~~~~~ 194 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLP---------------------------------DIFTELRNLTFLDLSQC-QLEQLSPTA 194 (306)
T ss_dssp CTTCCEEECTTCEEGGGEEC---------------------------------SCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred CcCCCEEECCCCccccccch---------------------------------hHHhhCcCCCEEECCCC-CcCCcCHHH
Confidence 8888888888775222 111 11334556666666653 455554444
Q ss_pred chhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccc-cCccEEEEcccc
Q 014100 244 DESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIADCK 312 (430)
Q Consensus 244 ~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~ 312 (430)
+ ..+++|+.|+++++. +..++. .+..+++|+.|+++++. +...... .+..+ ++|++|++++++
T Consensus 195 ~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 195 F---NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQ-ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp T---TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSS-SCCCCCTTCCEEECTTCC
T ss_pred h---cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHH-HHHhhhccCCEEEccCCC
Confidence 4 555666666666543 333322 34455666666666553 2222211 12334 366666665543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-18 Score=172.14 Aligned_cols=244 Identities=15% Similarity=0.071 Sum_probs=129.8
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCC----CccEEEeecC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFN----NLRHLVVDDC 89 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~L~~L~l~~c 89 (430)
+..+++|+++.+.+... .......++..+..+++|++|+++++. +.+..... ....++ +|++|++++|
T Consensus 24 ~~~~~~L~~L~L~~~~l-----~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~--l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGL-----TEARCKDISSALRVNPALAELNLRSNE-LGDVGVHC--VLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHHHTTCSEEEEESSCC-----CHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH--HHHTTCSTTCCCCEEECTTS
T ss_pred HhhcCCccEEEccCCCC-----CHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH--HHHHHhhCCCceeEEEccCC
Confidence 45578888888854321 223345677778888999999999876 54210000 001233 7999999988
Q ss_pred cCCCcCC---chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC--cccccC
Q 014100 90 TNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF--TENIIE 164 (430)
Q Consensus 90 ~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~ 164 (430)
.+.... ....+.++++|++|++++|. +.... .......+....++|++|++++|. ++..... ...+..
T Consensus 96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~ 168 (461)
T 1z7x_W 96 -CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAG----LQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRA 168 (461)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHH----HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHH----HHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhh
Confidence 444311 12236788999999999884 43220 110011111234578889888873 3322100 001445
Q ss_pred CCCccEEEEecCCCccccc-----------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccC
Q 014100 165 MPELRYLAIENCPDMETFI-----------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 165 l~~L~~L~l~~c~~l~~~~-----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 233 (430)
+++|++|++++|. ++... .++|++|++++|.+.... ...+......+++|++|+++++
T Consensus 169 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----------~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 169 KPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN----------CRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp CTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH----------HHHHHHHHHHCTTCCEEECCSS
T ss_pred CCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH----------HHHHHHHHHhCCCccEEeccCC
Confidence 7888888888876 43321 347888888888765421 0000011223456666666654
Q ss_pred CCceeecccCchh--hhhcccccEEeeccCccccc-----ccCCcccCCCCCEEEEccC
Q 014100 234 HKVQHLWKENDES--NKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 234 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c 285 (430)
.++......+.. ...+++|++|++++|. ++. ++..+..+++|+.|+++++
T Consensus 238 -~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 238 -KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp -BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred -cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 333321111000 0124556666666552 222 3333444555666666554
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=143.21 Aligned_cols=230 Identities=19% Similarity=0.194 Sum_probs=176.9
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++++|..+ .+++++|+++++. ++.++.+. ...+++|++|++++|..... .+...+.++++|+++.+.++..
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~---f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA---FSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTS---STTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEEEETT
T ss_pred CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHH---HcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcccCCc
Confidence 5667888766 4789999999876 88776543 25789999999999843343 4444477889988877776668
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccC-------CcceEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS-------NSVVHV 190 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-------~~L~~L 190 (430)
+..+ +.+.+..+++|++|+++++ .+..++... .....++..+++.++..++.++. ..++.|
T Consensus 92 l~~l---------~~~~f~~l~~L~~L~l~~n-~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 92 LLYI---------NPEAFQNLPNLQYLLISNT-GIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp CCEE---------CTTSBCCCTTCCEEEEEEE-CCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred cccc---------Cchhhhhcccccccccccc-ccccCCchh--hcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 8888 5566689999999999986 455554321 34456788899988887877662 368889
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP 270 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 270 (430)
++++|.+..+. .......+|++|.+.+++.++.++...+ ..+++|+.|+++++ .++.+|..
T Consensus 160 ~L~~N~i~~i~---------------~~~f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 160 WLNKNGIQEIH---------------NSAFNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp ECCSSCCCEEC---------------TTSSTTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSS
T ss_pred ccccccccCCC---------------hhhccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChh
Confidence 99999887655 2334456899999998889999887777 88999999999986 68888763
Q ss_pred cccCCCCCEEEEccCCCccccccccccccccCccEEEEcc
Q 014100 271 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 271 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 310 (430)
.+.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred --hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 478899999999999998885 57889999999864
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-17 Score=170.25 Aligned_cols=62 Identities=10% Similarity=0.119 Sum_probs=30.6
Q ss_pred ecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCcc-ccCCCcCCCCceEEecccCC
Q 014100 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI-FSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~~~~L~~l~l~~~~ 394 (430)
+++|+.|++++|. +++.........+++|++|++++|+.... +......+++|+++++++|.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 4556666666553 32221111112366777777777654211 11122345677777776664
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-15 Score=133.12 Aligned_cols=210 Identities=16% Similarity=0.128 Sum_probs=136.0
Q ss_pred hhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCcc
Q 014100 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 119 (430)
++.+|. + .++|++|+++++. ++.+.... ...+++|++|+++++..+..+++.. +.++++|++|++++|..+.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~ 94 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETH-LRTIPSHA---FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLT 94 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCC-CSEECTTT---TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCC
T ss_pred ccccCC-C--CCcccEEEEeCCc-ceEECHHH---ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCee
Confidence 556665 2 2378888888776 66554422 2567888888888874466655433 6778888888888855777
Q ss_pred EeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCcc---EEEEecCCCcccccCCcceEEEecCCC
Q 014100 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELR---YLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~---~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
.+ +...+..+++|++|+++++. ++.++. ...+++|+ +|++++++.++.+++.
T Consensus 95 ~i---------~~~~f~~l~~L~~L~l~~n~-l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~----------- 149 (239)
T 2xwt_C 95 YI---------DPDALKELPLLKFLGIFNTG-LKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN----------- 149 (239)
T ss_dssp EE---------CTTSEECCTTCCEEEEEEEC-CCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT-----------
T ss_pred Ec---------CHHHhCCCCCCCEEeCCCCC-Cccccc----cccccccccccEEECCCCcchhhcCcc-----------
Confidence 76 44445778888888888753 555543 34455555 7777766445444321
Q ss_pred CCcccCCCcceeccCccccCCcCCCCCCCc-EEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccC
Q 014100 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHL 274 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l 274 (430)
....+++|+ .|++++ +.++.++...+ .. ++|+.|+++++..++.+++ .+..+
T Consensus 150 ---------------------~~~~l~~L~~~L~l~~-n~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~~~~~~~l 203 (239)
T 2xwt_C 150 ---------------------AFQGLCNETLTLKLYN-NGFTSVQGYAF---NG-TKLDAVYLNKNKYLTVIDKDAFGGV 203 (239)
T ss_dssp ---------------------TTTTTBSSEEEEECCS-CCCCEECTTTT---TT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred ---------------------cccchhcceeEEEcCC-CCCcccCHhhc---CC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence 134567788 888877 36666655544 33 6788888888755666654 34566
Q ss_pred -CCCCEEEEccCCCccccccccccccccCccEEEEccccc
Q 014100 275 -ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 275 -~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
++|+.|+++++ .++.++. ..+++|+.|++.++..
T Consensus 204 ~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 204 YSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNTWT 238 (239)
T ss_dssp SBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC--
T ss_pred ccCCcEEECCCC-ccccCCh----hHhccCceeeccCccC
Confidence 78888888774 4566553 2577888888877653
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-15 Score=135.66 Aligned_cols=213 Identities=19% Similarity=0.190 Sum_probs=148.3
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEE
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLV 85 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 85 (430)
++.+|.++ .++|+++.+ .++.+..++. .+..+++|++|+++++. +..+... ....+++|++|+
T Consensus 23 l~~ip~~~--~~~l~~L~l----------~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~ 86 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFL----------HGNRISHVPAASFRACRNLTILWLHSNV-LARIDAA---AFTGLALLEQLD 86 (285)
T ss_dssp CSSCCTTC--CTTCSEEEC----------TTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTT---TTTTCTTCCEEE
T ss_pred cccCCcCC--CCCceEEEe----------eCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHh---hcCCccCCCEEe
Confidence 44444433 467888888 4455566663 47789999999999875 6654221 126789999999
Q ss_pred eecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCC
Q 014100 86 VDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEM 165 (430)
Q Consensus 86 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l 165 (430)
++++..+....+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .++.++... +..+
T Consensus 87 l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l 152 (285)
T 1ozn_A 87 LSDNAQLRSVDPAT-FHGLGRLHTLHLDRC-GLQEL---------GPGLFRGLAALQYLYLQDN-ALQALPDDT--FRDL 152 (285)
T ss_dssp CCSCTTCCCCCTTT-TTTCTTCCEEECTTS-CCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTTT--TTTC
T ss_pred CCCCCCccccCHHH-hcCCcCCCEEECCCC-cCCEE---------CHhHhhCCcCCCEEECCCC-cccccCHhH--hccC
Confidence 99985567654443 778999999999998 44444 3333578999999999986 455553321 4567
Q ss_pred CCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCch
Q 014100 166 PELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDE 245 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 245 (430)
++|++|+++++. ++.+++ .....+++|+.|+++++ .++...+..+
T Consensus 153 ~~L~~L~l~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~- 197 (285)
T 1ozn_A 153 GNLTHLFLHGNR-ISSVPE--------------------------------RAFRGLHSLDRLLLHQN-RVAHVHPHAF- 197 (285)
T ss_dssp TTCCEEECCSSC-CCEECT--------------------------------TTTTTCTTCCEEECCSS-CCCEECTTTT-
T ss_pred CCccEEECCCCc-ccccCH--------------------------------HHhcCccccCEEECCCC-cccccCHhHc-
Confidence 888888887764 333321 11345788888888884 6777766666
Q ss_pred hhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCC
Q 014100 246 SNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHG 287 (430)
Q Consensus 246 ~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~ 287 (430)
..+++|+.|+++++ .+..+++ .+..+++|+.|++++++.
T Consensus 198 --~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 198 --RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp --TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred --cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 77888999999886 4444443 366788899999988753
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-16 Score=153.32 Aligned_cols=215 Identities=15% Similarity=0.108 Sum_probs=128.6
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|++|++++| .+...++.. +.++++|++|++++| .+.... | +..+++|+.|+++++ .++.+
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~--------~---l~~l~~L~~L~Ls~N-~l~~l 95 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSN-VLYETL--------D---LESLSTLRTLDLNNN-YVQEL 95 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTS-CCEEEE--------E---CTTCTTCCEEECCSS-EEEEE
T ss_pred ccCCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCC-CCCCCc--------c---cccCCCCCEEEecCC-cCCCC
Confidence 35678999999987 566655544 788999999999988 455442 1 377889999999886 45544
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEeccc
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 232 (430)
+ ..++|++|++++|. ++.++ .++|+.|++++|.+.+..+ ...+.+++|+.|++++
T Consensus 96 ~-------~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~ 153 (487)
T 3oja_A 96 L-------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKL 153 (487)
T ss_dssp E-------ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGG--------------BCGGGGSSEEEEECTT
T ss_pred C-------CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCc--------------hhhcCCCCCCEEECCC
Confidence 2 33788888888775 33333 4466777777776555431 1234466777777766
Q ss_pred CCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+ .++...+..+. ..+++|+.|++++|. ++.++. ...+++|+.|+++++. +..++.. +..+++|+.|+++++.
T Consensus 154 N-~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 154 N-EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK 225 (487)
T ss_dssp S-CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC
T ss_pred C-CCCCcChHHHh--hhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCCc
Confidence 3 55554443330 255677777776653 444433 2246667777776653 4444332 4456666666666642
Q ss_pred cchhhhcccccccCCcceeecccceeecccCC
Q 014100 313 MIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 313 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
+..+. .....+++|+.|++.+++
T Consensus 226 -l~~lp--------~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 226 -LVLIE--------KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -CCEEC--------TTCCCCTTCCEEECTTCC
T ss_pred -Ccccc--------hhhccCCCCCEEEcCCCC
Confidence 22221 122235566666666553
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-15 Score=147.38 Aligned_cols=241 Identities=17% Similarity=0.149 Sum_probs=166.7
Q ss_pred eeeEeecccccccCccchhhhh-hhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchh
Q 014100 21 HEVQVKGELRRWEGNLNSTIQK-CYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPAN 99 (430)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 99 (430)
+.+.+.|..|....-....+.. +......+++|++|+++++. +..+... ....+++|++|++++| .+...++
T Consensus 3 ~~l~~ng~~~~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~-- 75 (487)
T 3oja_A 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAA---DLAPFTKLELLNLSSN-VLYETLD-- 75 (487)
T ss_dssp CEEEEETTEEEEESCCTTTHHHHHHTTSTTGGGCCEEECCSSC-CCCCCGG---GGTTCTTCCEEECTTS-CCEEEEE--
T ss_pred ceecCCCceeecccCchhhhHHHHHHhcccCCCccEEEeeCCc-CCCCCHH---HHhCCCCCCEEEeeCC-CCCCCcc--
Confidence 3455555444433322222222 22223345589999999876 6543321 1267899999999987 4555444
Q ss_pred HHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCc
Q 014100 100 LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179 (430)
Q Consensus 100 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l 179 (430)
+..+++|++|++++| .+..+ ...++|+.|+++++. +..++ ...+++|+.|++++|..-
T Consensus 76 -l~~l~~L~~L~Ls~N-~l~~l--------------~~~~~L~~L~L~~N~-l~~~~-----~~~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 76 -LESLSTLRTLDLNNN-YVQEL--------------LVGPSIETLHAANNN-ISRVS-----CSRGQGKKNIYLANNKIT 133 (487)
T ss_dssp -CTTCTTCCEEECCSS-EEEEE--------------EECTTCCEEECCSSC-CCCEE-----ECCCSSCEEEECCSSCCC
T ss_pred -cccCCCCCEEEecCC-cCCCC--------------CCCCCcCEEECcCCc-CCCCC-----ccccCCCCEEECCCCCCC
Confidence 668999999999998 56655 234899999999864 55443 234789999999988633
Q ss_pred cccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCceeecccCchhhhhcccc
Q 014100 180 ETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANL 253 (430)
Q Consensus 180 ~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L 253 (430)
...+ .++|+.|++++|.+.+..+ ... +.+++|+.|+++++ .++.++.. ..+++|
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------------~~l~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~L 193 (487)
T 3oja_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNF--------------AELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKL 193 (487)
T ss_dssp SGGGBCGGGGSSEEEEECTTSCCCEEEG--------------GGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTC
T ss_pred CCCchhhcCCCCCCEEECCCCCCCCcCh--------------HHHhhhCCcccEEecCCC-cccccccc-----ccCCCC
Confidence 3222 4689999999998776431 122 25789999999985 67776433 458899
Q ss_pred cEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccc
Q 014100 254 IRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 254 ~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
+.|+++++ .++.+|+.+..+++|+.|+++++. +..+|. .+..+++|+.|++++++..
T Consensus 194 ~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 194 KTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred CEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccccch--hhccCCCCCEEEcCCCCCc
Confidence 99999986 566777778889999999999864 666665 3567899999999887644
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-16 Score=164.32 Aligned_cols=329 Identities=12% Similarity=0.048 Sum_probs=179.7
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
...+++|+++.+.+.... ......++.....+++|++|++++|. +..+.... ..+++|++|+++.+....
T Consensus 188 ~~~~~~L~~L~L~~n~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~----~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFA-----KISPKDLETIARNCRSLVSVKVGDFE-ILELVGFF----KAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp HHHCCCCCEEECTTCCCS-----SCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHH----HHCTTCCEEEECBCCCCT
T ss_pred HhcCCCccEEEeeccCCC-----ccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHH----hhhhHHHhhccccccccc
Confidence 345788999988442211 01123444445667889999998875 43322222 467888888887532221
Q ss_pred cC-CchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEE
Q 014100 94 SA-IPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172 (430)
Q Consensus 94 ~~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~ 172 (430)
.. .....+..+++|+.|+++++. ...+ |. +...+++|++|++++|. +........ +..+++|++|+
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~-~~~l---------~~-~~~~~~~L~~L~Ls~~~-l~~~~~~~~-~~~~~~L~~L~ 324 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMG-PNEM---------PI-LFPFAAQIRKLDLLYAL-LETEDHCTL-IQKCPNLEVLE 324 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCC-TTTG---------GG-GGGGGGGCCEEEETTCC-CCHHHHHHH-HTTCTTCCEEE
T ss_pred chHHHHHHhhccccccccCccccc-hhHH---------HH-HHhhcCCCcEEecCCCc-CCHHHHHHH-HHhCcCCCEEe
Confidence 10 111124567788888877642 1111 22 23567788888888775 332211111 45678888888
Q ss_pred EecCCCccccc-----CCcceEEEecC----------CC-CCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 173 IENCPDMETFI-----SNSVVHVTTDN----------KE-PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 173 l~~c~~l~~~~-----~~~L~~L~l~~----------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
+.++-.-..++ +++|++|++++ +. +.... +......+++|++|++ .|+++
T Consensus 325 L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG-------------LIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH-------------HHHHHHHCTTCSEEEE-EESCC
T ss_pred ccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH-------------HHHHHhhCccCeEEEe-ecCCc
Confidence 87432111111 56788888874 33 22110 0001234678888888 44566
Q ss_pred eeecccCchhhhhcccccEEeecc---Cccccccc------CCcccCCCCCEEEEccCCC-ccccccccccccccCccEE
Q 014100 237 QHLWKENDESNKAFANLIRLKISE---CSKLQKLV------TPSWHLENLATLEVSKCHG-LINVLTLSTSESLVNLGRM 306 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~---c~~l~~l~------~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~l~~L~~L 306 (430)
+......+ ...+++|+.|++++ |..++..| ..+..+++|+.|+++.|.+ +.+.....+...+++|++|
T Consensus 391 ~~~~~~~l--~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L 468 (592)
T 3ogk_B 391 TNESLESI--GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468 (592)
T ss_dssp CHHHHHHH--HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEE
T ss_pred cHHHHHHH--HhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEe
Confidence 55332222 13477888888874 44555432 1244578888888877654 3332222233457888888
Q ss_pred EEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccC--CCcCCCC
Q 014100 307 KIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ--GVVDAPK 384 (430)
Q Consensus 307 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~~ 384 (430)
++++|. +.+.. .......+++|++|++++|+ +++.........+++|++|++++|. ++.... -...+|.
T Consensus 469 ~L~~n~-l~~~~------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 469 LLGYVG-ESDEG------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPY 539 (592)
T ss_dssp EECSCC-SSHHH------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTT
T ss_pred eccCCC-CCHHH------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCC
Confidence 888775 33211 00011236788888888886 5432111122347888888888886 433211 1234566
Q ss_pred ceEEec
Q 014100 385 LNKVKP 390 (430)
Q Consensus 385 L~~l~l 390 (430)
++...+
T Consensus 540 l~~~~~ 545 (592)
T 3ogk_B 540 WNIELI 545 (592)
T ss_dssp EEEEEE
T ss_pred cEEEEe
Confidence 655544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=131.22 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=96.5
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
+|++|+++++ .+..+++.. +.++++|++|++++|..+..+ +...+..+++|++|++++|..++.++...
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i---------~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHA-FSNLPNISRIYVSIDVTLQQL---------ESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TCCEEEEESC-CCSEECTTT-TTTCTTCCEEEEECCSSCCEE---------CTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cccEEEEeCC-cceEECHHH-ccCCCCCcEEeCCCCCCccee---------CHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 6777777765 455544322 556777777777776445555 33334566677777776644555554221
Q ss_pred ccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCc---EEecccCCCc
Q 014100 160 ENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR---YLELSRLHKV 236 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~---~L~L~~~~~l 236 (430)
...+++|++|+++++. ++.+ + ..+.+++|+ .|++++++.+
T Consensus 101 --f~~l~~L~~L~l~~n~-l~~l------------------p----------------~~~~l~~L~~L~~L~l~~N~~l 143 (239)
T 2xwt_C 101 --LKELPLLKFLGIFNTG-LKMF------------------P----------------DLTKVYSTDIFFILEITDNPYM 143 (239)
T ss_dssp --EECCTTCCEEEEEEEC-CCSC------------------C----------------CCTTCCBCCSEEEEEEESCTTC
T ss_pred --hCCCCCCCEEeCCCCC-Cccc------------------c----------------ccccccccccccEEECCCCcch
Confidence 3455666666665553 2211 1 123344554 7777775466
Q ss_pred eeecccCchhhhhccccc-EEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccc-cCccEEEEcc
Q 014100 237 QHLWKENDESNKAFANLI-RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIAD 310 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~ 310 (430)
+.++...+ ..+++|+ .|+++++ .++.+|......++|+.|+++++..++.++.. .+..+ ++|++|++++
T Consensus 144 ~~i~~~~~---~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 144 TSIPVNAF---QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CEECTTTT---TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTT
T ss_pred hhcCcccc---cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCC
Confidence 66665555 6667777 7777664 34455544333355666666655444444332 12334 4455555544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=137.51 Aligned_cols=226 Identities=15% Similarity=0.139 Sum_probs=135.5
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.+++++|+++++ ++..+++ ..+.++++|++|++++|...+.+ +.+.+..++++.++.+.++..+..++.
T Consensus 29 ~~~l~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~i~~~i---------~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVI---------EADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CTTCSEEEEESC-CCSEECT-TSSTTCTTCCEEEEECCTTCCEE---------CTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCCCEEEccCC-cCCCcCH-HHHcCCCCCCEEECcCCCCCCcc---------ChhHhhcchhhhhhhcccCCcccccCc
Confidence 356777777776 4565443 23667777777777777555555 444456667766655555556666643
Q ss_pred CcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCce
Q 014100 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 237 (430)
.. ...+++|++|++.++. ++.++.. ......++..|++.++..+.
T Consensus 98 ~~--f~~l~~L~~L~l~~n~-l~~~~~~--------------------------------~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 98 EA--FQNLPNLQYLLISNTG-IKHLPDV--------------------------------HKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp TS--BCCCTTCCEEEEEEEC-CSSCCCC--------------------------------TTCCBSSCEEEEEESCTTCC
T ss_pred hh--hhhccccccccccccc-cccCCch--------------------------------hhcccchhhhhhhccccccc
Confidence 31 4566777777776654 2222210 01223456666666666666
Q ss_pred eecccCchhhhhc-ccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchh
Q 014100 238 HLWKENDESNKAF-ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 238 ~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.++...+ ..+ ..++.|+++++ .++.+++......+|+.+.+.+++.++.++.. .+..+++|++|+++++ .++.
T Consensus 143 ~l~~~~f---~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 143 TIERNSF---VGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHS 216 (350)
T ss_dssp EECTTSS---TTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCC
T ss_pred cccccch---hhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCc
Confidence 6655544 333 35667777663 55666665555566777777777777776643 2456777777777765 4444
Q ss_pred hhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 014100 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
+.. ..+.+|+.|++.++.+++.++. ...+++|+.+++.+
T Consensus 217 lp~----------~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 LPS----------YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp CCS----------SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred cCh----------hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 431 1266777777777777777763 23477777777754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=127.54 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=61.9
Q ss_pred ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccc
Q 014100 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 126 (430)
+..++++++++++++. ++.++.+ -.++++.|+++++ .+....+. .+.++++|++|++++| .+..+.
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~------~~~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~---- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPD------LPKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDRA-ELTKLQ---- 71 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSC------CCTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTTS-CCCEEE----
T ss_pred ccccCCccEEECCCCC-CCcCCCC------CCCCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCCC-ccCccc----
Confidence 3456667777776544 5543322 2357777777776 34443332 3666777777777776 455541
Q ss_pred ccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 127 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.. ..+++|++|+++++ .+..++.. ...+++|++|+++++.
T Consensus 72 -----~~--~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N~ 111 (290)
T 1p9a_G 72 -----VD--GTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFNR 111 (290)
T ss_dssp -----CC--SCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSSC
T ss_pred -----CC--CCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCCc
Confidence 11 45677777777764 45555443 4556666666666654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-15 Score=144.09 Aligned_cols=234 Identities=14% Similarity=0.182 Sum_probs=126.4
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
++++.|+++++. +...+... ..+++|++|++++|. +........+.++++|++|++++|. +....
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~-------- 134 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI-------- 134 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH--------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH--------
Confidence 556666666544 33222221 345666666666653 3321112235566666666666663 22110
Q ss_pred cCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCccee
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+..+ ..+++|++|++++|..++. ++.. +..+++|++|++++|..++... +.
T Consensus 135 ~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~----------------~~------- 187 (336)
T 2ast_B 135 VNTL-AKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKH----------------VQ------- 187 (336)
T ss_dssp HHHH-TTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHH----------------HH-------
T ss_pred HHHH-hcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHH----------------HH-------
Confidence 1111 3456666666666544432 2111 3445566666665553333210 00
Q ss_pred ccCccccCCcCCCCC-CCcEEecccCC-Cceee-cccCchhhhhcccccEEeeccCcccc-cccCCcccCCCCCEEEEcc
Q 014100 209 TDQIQPLFDEKVAFP-QLRYLELSRLH-KVQHL-WKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~-~L~~L~L~~~~-~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~ 284 (430)
.....++ +|++|++++|. .+++. .+..+ ..+++|+.|++++|..++ ..+..+..+++|+.|++++
T Consensus 188 --------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 188 --------VAVAHVSETITQLNLSGYRKNLQKSDLSTLV---RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp --------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH---HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred --------HHHHhcccCCCEEEeCCCcccCCHHHHHHHH---hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 1134567 88888888864 34321 11122 677889999998887444 4455667888999999998
Q ss_pred CCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceee-cccceeecccCCCCceecC
Q 014100 285 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 285 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~ 351 (430)
|..+.+.... .+..+++|++|++++| +.+.. ...+ ..++.|++. ++.++....
T Consensus 257 ~~~~~~~~~~-~l~~~~~L~~L~l~~~--i~~~~----------~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 257 CYDIIPETLL-ELGEIPTLKTLQVFGI--VPDGT----------LQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp CTTCCGGGGG-GGGGCTTCCEEECTTS--SCTTC----------HHHHHHHSTTSEES-CCCSCCTTC
T ss_pred CCCCCHHHHH-HHhcCCCCCEEeccCc--cCHHH----------HHHHHhhCcceEEe-cccCccccC
Confidence 8755433221 2466899999999888 22211 0112 347777775 456665443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-13 Score=124.86 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=126.3
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.+.++|..+. ++|++|+++++. +..+... ....+++|++|++++| .+..+++.. +.++++|++|++++| .+
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l 88 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNP-LRHLGSY---SFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN-PI 88 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCC-CCEECTT---TTTTCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC-CC
T ss_pred CccccCCCCC--CCccEEECCCCc-ccccCHh---HhccccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCC-cc
Confidence 3455655442 468888887765 5544321 1256777888888776 455544322 567778888888777 45
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCC
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|++.++. +..++.. .+..+++|++|+++++. +.
T Consensus 89 ~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~-------------------l~ 137 (276)
T 2z62_A 89 QSL---------ALGAFSGLSSLQKLVAVETN-LASLENF--PIGHLKTLKELNVAHNL-------------------IQ 137 (276)
T ss_dssp CEE---------CTTTTTTCTTCCEEECTTSC-CCCSTTC--CCTTCTTCCEEECCSSC-------------------CC
T ss_pred Ccc---------ChhhhcCCccccEEECCCCC-ccccCch--hcccCCCCCEEECcCCc-------------------cc
Confidence 554 33334667777777777653 3333221 14456666666666554 22
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccccc----EEeeccCcccccccCCcccC
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI----RLKISECSKLQKLVTPSWHL 274 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l 274 (430)
+.. +....+.+++|+.|+++++ .++.+....+ ..+++|+ +|+++++ .+..+++.....
T Consensus 138 ~~~-------------l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~ 199 (276)
T 2z62_A 138 SFK-------------LPEYFSNLTNLEHLDLSSN-KIQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE 199 (276)
T ss_dssp CCC-------------CCGGGGGCTTCCEEECCSS-CCCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCS
T ss_pred eec-------------CchhhccCCCCCEEECCCC-CCCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCC
Confidence 110 0022455678888888874 6777665555 5555555 7777775 455565555555
Q ss_pred CCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
.+|+.|+++++. ++.++.. .+..+++|+.|+++++
T Consensus 200 ~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 200 IRLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECCSS
T ss_pred CcccEEECCCCc-eeecCHh-HhcccccccEEEccCC
Confidence 578888887764 5555442 2456777888887753
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=128.91 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=50.6
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
.+.+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .+..+++ +..+++|+.|++++|. +..++. +.
T Consensus 147 l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~---l~ 214 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNA-QVSDLTP--L---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVSP---LA 214 (308)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCGG---GT
T ss_pred ccCCCCccEEEccCC-cCCCChh--h---cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc-cCcccc---cc
Confidence 345667777777764 5555433 3 66677777777765 3444443 5567777777777653 444442 45
Q ss_pred cccCccEEEEcccc
Q 014100 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+++|+.|++++++
T Consensus 215 ~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 215 NTSNLFIVTLTNQT 228 (308)
T ss_dssp TCTTCCEEEEEEEE
T ss_pred CCCCCCEEEccCCe
Confidence 67777777777654
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-13 Score=122.76 Aligned_cols=84 Identities=23% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCcccccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 299 (430)
.+++|+.|+++++ .++.++...+ ..+++|+.|+++++ .+..+++ .+..+++|+.|+++++ .++.++.. .+..
T Consensus 131 ~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~ 203 (270)
T 2o6q_A 131 SLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEG-AFDS 203 (270)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTT
T ss_pred cCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHH-Hhcc
Confidence 4455555555553 4444443333 44555555555554 2333332 2344555666666554 34443322 2344
Q ss_pred ccCccEEEEccc
Q 014100 300 LVNLGRMKIADC 311 (430)
Q Consensus 300 l~~L~~L~l~~c 311 (430)
+++|+.|+++++
T Consensus 204 l~~L~~L~l~~N 215 (270)
T 2o6q_A 204 LEKLKMLQLQEN 215 (270)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCCEEEecCC
Confidence 556666666543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=128.51 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=135.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..+. +. ..+++|++|++++| .+...++ +.++++|++|++++|. +..+
T Consensus 39 ~l~~L~~L~l~~~~-i~~l~-~~----~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~------- 100 (308)
T 1h6u_A 39 DLDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV------- 100 (308)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC-------
T ss_pred HcCCcCEEEeeCCC-ccCch-hh----hccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc-------
Confidence 46788888888775 55432 22 56888888888887 5565444 6678888888888873 5444
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCcccCCC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE 204 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~ 204 (430)
+ . +..+++|++|+++++. ++.++. +..+++|++|++++|. ++.++ .++|++|++++|.+.+..
T Consensus 101 --~-~-~~~l~~L~~L~l~~n~-l~~~~~----l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~--- 167 (308)
T 1h6u_A 101 --S-A-IAGLQSIKTLDLTSTQ-ITDVTP----LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLT--- 167 (308)
T ss_dssp --G-G-GTTCTTCCEEECTTSC-CCCCGG----GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred --h-h-hcCCCCCCEEECCCCC-CCCchh----hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCCh---
Confidence 1 1 3677888888888763 555542 6778888888888875 44443 568888999888876644
Q ss_pred cceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEcc
Q 014100 205 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 284 (430)
....+++|+.|+++++ .++.+.+ + ..+++|+.|++++| .+..+++ +..+++|+.|++++
T Consensus 168 -------------~l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 168 -------------PLANLSKLTTLKADDN-KISDISP--L---ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN 226 (308)
T ss_dssp -------------GGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred -------------hhcCCCCCCEEECCCC-ccCcChh--h---cCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccC
Confidence 2567889999999985 6776543 3 78899999999997 4555553 67899999999998
Q ss_pred CC
Q 014100 285 CH 286 (430)
Q Consensus 285 c~ 286 (430)
++
T Consensus 227 N~ 228 (308)
T 1h6u_A 227 QT 228 (308)
T ss_dssp EE
T ss_pred Ce
Confidence 65
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-16 Score=156.75 Aligned_cols=343 Identities=14% Similarity=0.064 Sum_probs=199.5
Q ss_pred ccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeec-cCCCCCCCCCCCccEEEeecCcCCCcC
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIW-HGQALPVSFFNNLRHLVVDDCTNMLSA 95 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~~ 95 (430)
.++|+++.+.+... .+..... .+..+++|++|++++|. +.... ...+.....+++|++|+++++ .+...
T Consensus 2 ~~~l~~L~Ls~~~l-----~~~~~~~---~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~ 71 (461)
T 1z7x_W 2 SLDIQSLDIQCEEL-----SDARWAE---LLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDV 71 (461)
T ss_dssp CEEEEEEEEESCCC-----CHHHHHH---HHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHH
T ss_pred Cccceehhhhhccc-----CchhHHH---HHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChH
Confidence 36678888844321 1111222 24567889999999887 54210 000001145799999999987 45443
Q ss_pred CchhHHhhcC----CCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc---cccCCCCc
Q 014100 96 IPANLIRCLN----NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE---NIIEMPEL 168 (430)
Q Consensus 96 ~~~~~~~~l~----~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~~l~~L 168 (430)
.+..+...++ +|++|++++|. +... +....+.. +..+++|++|+++++. +++...... .....++|
T Consensus 72 ~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~----~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L 144 (461)
T 1z7x_W 72 GVHCVLQGLQTPSCKIQKLSLQNCC-LTGA----GCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRL 144 (461)
T ss_dssp HHHHHHHTTCSTTCCCCEEECTTSC-CBGG----GHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCC
T ss_pred HHHHHHHHHhhCCCceeEEEccCCC-CCHH----HHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcc
Confidence 3444455676 79999999984 4321 11111222 3678899999999875 433211100 01235689
Q ss_pred cEEEEecCCCcccc-----c-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCce
Q 014100 169 RYLAIENCPDMETF-----I-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 169 ~~L~l~~c~~l~~~-----~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~ 237 (430)
++|++++|. ++.. + .++|++|++++|.+..... ..+.... ...++|++|++++| .++
T Consensus 145 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~----------~~l~~~l~~~~~~L~~L~L~~n-~l~ 212 (461)
T 1z7x_W 145 EKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEAGV----------RVLCQGLKDSPCQLEALKLESC-GVT 212 (461)
T ss_dssp CEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH----------HHHHHHHHHSCCCCCEEECTTS-CCB
T ss_pred eEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH----------HHHHHHHhcCCCCceEEEccCC-CCc
Confidence 999999985 4432 1 4789999999988653210 0000001 13569999999986 555
Q ss_pred eecccCc-hhhhhcccccEEeeccCccccc----ccCC-cccCCCCCEEEEccCCCcccccc---ccccccccCccEEEE
Q 014100 238 HLWKEND-ESNKAFANLIRLKISECSKLQK----LVTP-SWHLENLATLEVSKCHGLINVLT---LSTSESLVNLGRMKI 308 (430)
Q Consensus 238 ~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~----l~~~-~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l 308 (430)
......+ .....+++|++|++++|..-.. +.+. ...+++|+.|++++| .++.... ...+..+++|++|++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEEC
Confidence 4211111 1125679999999999843221 2121 225789999999998 4554211 112456899999999
Q ss_pred cccccchhhhcccccccCCcc-eeecccceeecccCCCCceecC---CCcccCCCCccEEEeccCCCCccc-cC----CC
Q 014100 309 ADCKMIEQIIQLQVGEEAKGC-VVFEELGYLGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIF-SQ----GV 379 (430)
Q Consensus 309 ~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~~c~~l~~l-~~----~~ 379 (430)
+++. +.+..... ..... ...++|+.|++.+|. ++.... ......+++|++|++++| .++.. +. ..
T Consensus 292 s~n~-i~~~~~~~---l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 292 AGNE-LGDEGARL---LCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGL 365 (461)
T ss_dssp TTCC-CHHHHHHH---HHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHH
T ss_pred CCCC-CchHHHHH---HHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHH
Confidence 9874 43321100 00000 113689999999985 443211 012234789999999988 44432 11 11
Q ss_pred c-CCCCceEEecccCCC
Q 014100 380 V-DAPKLNKVKPTEEED 395 (430)
Q Consensus 380 ~-~~~~L~~l~l~~~~~ 395 (430)
. ..++|++++++++..
T Consensus 366 ~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDV 382 (461)
T ss_dssp TSTTCCCCEEECTTSCC
T ss_pred cCCCCceEEEECCCCCC
Confidence 1 267999999988753
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-15 Score=140.60 Aligned_cols=108 Identities=18% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-CCcccCCCCCEEEEccCCCccccccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
+.+++|++|+++++ .++.++.........+++|+.|+++++......| +....+++|+.|+++++. ++.+|.. +.
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~--~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG--LP 273 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS--CC
T ss_pred ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh--cc
Confidence 45667777777764 4543221111111345677777777754333232 233456677777777653 4555432 11
Q ss_pred cccCccEEEEcccccchhhhcccccccCCcceeecccceeecccC
Q 014100 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
++|++|+++++ .++.+. . ...+++|+.|++.+.
T Consensus 274 --~~L~~L~Ls~N-~l~~~p--------~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 274 --AKLSVLDLSYN-RLDRNP--------S-PDELPQVGNLSLKGN 306 (312)
T ss_dssp --SEEEEEECCSS-CCCSCC--------C-TTTSCEEEEEECTTC
T ss_pred --CCceEEECCCC-CCCCCh--------h-HhhCCCCCEEeccCC
Confidence 67777777765 333331 1 223677777777764
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-13 Score=123.62 Aligned_cols=189 Identities=20% Similarity=0.197 Sum_probs=106.7
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.+..+|..+. ++|++|+++++. +..+... ....+++|++|+++++ .+..+++ ..+.++++|++|++++| .+
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~---~~~~l~~L~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n-~l 97 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNK-LSSLPSK---AFHRLTKLRLLYLNDN-KLQTLPA-GIFKELKNLETLWVTDN-KL 97 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CSCCCTT---SSSSCTTCCEEECCSS-CCSCCCT-TTTSSCTTCCEEECCSS-CC
T ss_pred CCCccCCCCC--CCCCEEECcCCC-CCeeCHH---HhcCCCCCCEEECCCC-ccCeeCh-hhhcCCCCCCEEECCCC-cC
Confidence 3444444332 456666666554 4432211 1244566666666665 3444322 22455666666666665 33
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCC
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|+++++ .++.++... +..+++|++|++++ |.+.
T Consensus 98 ~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~-------------------n~l~ 146 (270)
T 2o6q_A 98 QAL---------PIGVFDQLVNLAELRLDRN-QLKSLPPRV--FDSLTKLTYLSLGY-------------------NELQ 146 (270)
T ss_dssp CCC---------CTTTTTTCSSCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCS-------------------SCCC
T ss_pred CcC---------CHhHcccccCCCEEECCCC-ccCeeCHHH--hCcCcCCCEEECCC-------------------CcCC
Confidence 333 3333455566666666653 233332211 23445555555554 4433
Q ss_pred cccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCC
Q 014100 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENL 277 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L 277 (430)
++.. .....+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .++.+++. +..+++|
T Consensus 147 ~~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 147 SLPK--------------GVFDKLTSLKELRLYNN-QLKRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKL 207 (270)
T ss_dssp CCCT--------------TTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ccCH--------------hHccCCcccceeEecCC-cCcEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCC
Confidence 3220 12356789999999884 6777766655 77889999999887 55566553 5678899
Q ss_pred CEEEEccCC
Q 014100 278 ATLEVSKCH 286 (430)
Q Consensus 278 ~~L~l~~c~ 286 (430)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999998865
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=124.17 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=135.4
Q ss_pred cceeeeEeecccccccCccchhhhhhhh-cccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCC
Q 014100 18 PKLHEVQVKGELRRWEGNLNSTIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96 (430)
Q Consensus 18 ~~L~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 96 (430)
++|+++.+ ..+.+..++. .+..+++|++|+++++. +..+.... ...+++|++|+++++ .+...+
T Consensus 28 ~~l~~L~l----------s~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~ 92 (276)
T 2z62_A 28 FSTKNLDL----------SFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGN-PIQSLA 92 (276)
T ss_dssp TTCCEEEC----------TTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCCEEC
T ss_pred CCccEEEC----------CCCcccccCHhHhccccCCcEEECCCCc-CCccCHHH---ccCCcCCCEEECCCC-ccCccC
Confidence 46999998 3455556654 57789999999999885 66544322 267899999999997 566655
Q ss_pred chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEe
Q 014100 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIE 174 (430)
Q Consensus 97 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~ 174 (430)
+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++. +.. ++.. +..+++|++|+++
T Consensus 93 ~~~-~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~---~~~l~~L~~L~Ls 157 (276)
T 2z62_A 93 LGA-FSGLSSLQKLVAVET-NLASL---------ENFPIGHLKTLKELNVAHNL-IQSFKLPEY---FSNLTNLEHLDLS 157 (276)
T ss_dssp TTT-TTTCTTCCEEECTTS-CCCCS---------TTCCCTTCTTCCEEECCSSC-CCCCCCCGG---GGGCTTCCEEECC
T ss_pred hhh-hcCCccccEEECCCC-Ccccc---------CchhcccCCCCCEEECcCCc-cceecCchh---hccCCCCCEEECC
Confidence 433 778999999999998 44444 23224788999999999864 444 2333 6778888888888
Q ss_pred cCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCc-EEecccCCCceeecccCchhhhhcccc
Q 014100 175 NCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANL 253 (430)
Q Consensus 175 ~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~~~~~~~~~~~~l~~L 253 (430)
+|. ++.+++..+ .....++.+. +|++++ +.++.++...+ ...+|
T Consensus 158 ~N~-l~~~~~~~~-----------------------------~~l~~L~~l~l~L~ls~-n~l~~~~~~~~----~~~~L 202 (276)
T 2z62_A 158 SNK-IQSIYCTDL-----------------------------RVLHQMPLLNLSLDLSL-NPMNFIQPGAF----KEIRL 202 (276)
T ss_dssp SSC-CCEECGGGG-----------------------------HHHHTCTTCCEEEECCS-SCCCEECTTSS----CSCCE
T ss_pred CCC-CCcCCHHHh-----------------------------hhhhhccccceeeecCC-CcccccCcccc----CCCcc
Confidence 875 333322111 1111222333 677776 46666655443 23478
Q ss_pred cEEeeccCcccccccCC-cccCCCCCEEEEccCC
Q 014100 254 IRLKISECSKLQKLVTP-SWHLENLATLEVSKCH 286 (430)
Q Consensus 254 ~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~ 286 (430)
+.|+++++. ++.+++. +..+++|+.|++++++
T Consensus 203 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 203 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 888888764 5566554 4578888888888754
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=126.41 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccC
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 285 (430)
+.+++|+.|+++++ .++.+++..+ ..+++|+.|++++|. +..+++ .+..+++|+.|+++++
T Consensus 154 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 154 DKLTNLTELDLSYN-QLQSLPEGVF---DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCccCCEEECCCC-CcCccCHHHh---cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 34556666666653 4554444333 455566666665543 333332 2345555666655554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.3e-13 Score=124.52 Aligned_cols=199 Identities=18% Similarity=0.166 Sum_probs=119.1
Q ss_pred CCCCccEEEeecCcCCCcCCchhH-HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccc-----cccceeeccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANL-IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-----PKLFELTLMDLP 150 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~ 150 (430)
.+++|++|++++| .+....|..+ +..+++|++|++++| .+..+ |..+ ..+ ++|++|+++++.
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~---------~~~~-~~l~~~~~~~L~~L~L~~N~ 160 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATR---------DAWL-AELQQWLKPGLKVLSIAQAH 160 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSS---------SSHH-HHHHTTCCTTCCEEEEESCS
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcch---------hHHH-HHHHHhhcCCCcEEEeeCCC
Confidence 4677777777776 3443334332 256777777777776 33332 1111 233 677777777653
Q ss_pred cccccccCcccccCCCCccEEEEecCCCccc---------ccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCC
Q 014100 151 KLKRFCNFTENIIEMPELRYLAIENCPDMET---------FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVA 221 (430)
Q Consensus 151 ~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 221 (430)
+..++.. .+..+++|++|+++++..... -..++|++|++++|.+.+...+. ......
T Consensus 161 -l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----------~~~~~~ 226 (312)
T 1wwl_A 161 -SLNFSCE--QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC-----------SALAAA 226 (312)
T ss_dssp -CCCCCTT--TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH-----------HHHHHT
T ss_pred -CccchHH--HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH-----------HHHHhc
Confidence 4444321 155677777777777663322 11456777777777765322000 001134
Q ss_pred CCCCcEEecccCCCceeecc-cCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
+++|+.|+++++ .++...+ ..+ ..+++|+.|+++++ .++.+|..+. ++|+.|+++++ .++.+|. ...+
T Consensus 227 l~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l 295 (312)
T 1wwl_A 227 RVQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDEL 295 (312)
T ss_dssp TCCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTS
T ss_pred CCCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh---HhhC
Confidence 678888888874 5665432 222 55688888888886 4557776554 78888888875 4666643 5678
Q ss_pred cCccEEEEcccc
Q 014100 301 VNLGRMKIADCK 312 (430)
Q Consensus 301 ~~L~~L~l~~c~ 312 (430)
++|++|++++++
T Consensus 296 ~~L~~L~L~~N~ 307 (312)
T 1wwl_A 296 PQVGNLSLKGNP 307 (312)
T ss_dssp CEEEEEECTTCT
T ss_pred CCCCEEeccCCC
Confidence 888888887753
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-14 Score=133.38 Aligned_cols=245 Identities=14% Similarity=0.090 Sum_probs=134.1
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhc--CCCCEEEEecCCCccEeecccccc
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL--NNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l--~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
..|..-++..+..+..-|.... ..-..++.++++++. +. + ..+..+ +++++|++++|. +...
T Consensus 22 ~~L~~~d~~~~~~vc~~W~~~~---~~~~~~~~l~l~~~~-~~---~-~~~~~~~~~~l~~L~l~~n~-l~~~------- 85 (336)
T 2ast_B 22 SCLCLPELLKVSGVCKRWYRLA---SDESLWQTLDLTGKN-LH---P-DVTGRLLSQGVIAFRCPRSF-MDQP------- 85 (336)
T ss_dssp TTSCHHHHHHTTSSCHHHHHHH---TCSTTSSEEECTTCB-CC---H-HHHHHHHHTTCSEEECTTCE-ECSC-------
T ss_pred HhCCHHHHHHHHHHHHHHHHHh---cCchhheeecccccc-CC---H-HHHHhhhhccceEEEcCCcc-cccc-------
Confidence 3343344445554444455441 112347788888752 22 2 235556 889999988873 3322
Q ss_pred CCcCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEecCCCccc-cc-----CCcceEEEecCCC-CCc
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMET-FI-----SNSVVHVTTDNKE-PEK 199 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~-----~~~L~~L~l~~~~-~~~ 199 (430)
+..+ ..+++|++|+++++. +.. ++.. ...+++|++|++++|. ++. .+ .++|++|++++|. +.+
T Consensus 86 --~~~~-~~~~~L~~L~L~~~~-l~~~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 86 --LAEH-FSPFRVQHMDLSNSV-IEVSTLHGI---LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp --CCSC-CCCBCCCEEECTTCE-ECHHHHHHH---HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred --chhh-ccCCCCCEEEccCCC-cCHHHHHHH---HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence 2222 567889999998875 332 3222 5678888888888875 332 21 4566666666662 332
Q ss_pred ccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeec-ccCchhhhhcc-cccEEeeccCc-cc--ccccCCcccC
Q 014100 200 LTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW-KENDESNKAFA-NLIRLKISECS-KL--QKLVTPSWHL 274 (430)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~-~~~~~~~~~l~-~L~~L~l~~c~-~l--~~l~~~~~~l 274 (430)
.. +......+++|++|++++|..++... +..+ ..++ +|++|++++|. .+ ..++..+..+
T Consensus 158 ~~-------------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~ 221 (336)
T 2ast_B 158 FA-------------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLSTLVRRC 221 (336)
T ss_dssp HH-------------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHH---HHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred HH-------------HHHHHhcCCCCCEEcCCCCCCcChHHHHHHH---HhcccCCCEEEeCCCcccCCHHHHHHHHhhC
Confidence 10 00113346677777777764555421 1112 5566 77777777764 23 2344444566
Q ss_pred CCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccC
Q 014100 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
++|+.|++++|..+++.... .+..+++|++|++++|..+.+... .....+++|+.|++.+|
T Consensus 222 ~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred CCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc
Confidence 77777777776644432211 245567777777777653322210 01122667777777766
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-12 Score=118.82 Aligned_cols=194 Identities=15% Similarity=0.074 Sum_probs=138.7
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++++.++++++ .+..+++. + .+++++|++++| .+..+ +...+..+++|+.|+++++ .++.+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~--~--~~~l~~L~L~~N-~l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPD--L--PKDTTILHLSEN-LLYTF---------SLATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSC--C--CTTCCEEECTTS-CCSEE---------EGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred cccCCccEEECCCC-CCCcCCCC--C--CCCCCEEEcCCC-cCCcc---------CHHHhhcCCCCCEEECCCC-ccCcc
Confidence 46889999999986 67775543 2 368999999998 56655 2333478899999999986 46666
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEec
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLEL 230 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L 230 (430)
+. ...+++|++|+++++. ++.+| .++|++|++++|.+.++.+ .....+++|+.|++
T Consensus 71 ~~----~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~--------------~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 71 QV----DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPL--------------GALRGLGELQELYL 131 (290)
T ss_dssp EC----CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCS--------------STTTTCTTCCEEEC
T ss_pred cC----CCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCH--------------HHHcCCCCCCEEEC
Confidence 44 3678999999999875 55555 4578888888888766441 22456778888888
Q ss_pred ccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc-ccCCCCCEEEEccCCCccccccccccccccCccEEEEc
Q 014100 231 SRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 309 (430)
+++ .++.++...+ ..+++|+.|+++++ .++.+|+.. ..+++|+.|+++++ .++.++.. +...++|+.|++.
T Consensus 132 ~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~--~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 132 KGN-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG--FFGSHLLPFAFLH 203 (290)
T ss_dssp TTS-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCCCSEEECC
T ss_pred CCC-CCCccChhhc---ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChh--hcccccCCeEEeC
Confidence 874 7777766655 67788888888875 556666543 56788888888775 46666542 4456678888887
Q ss_pred ccc
Q 014100 310 DCK 312 (430)
Q Consensus 310 ~c~ 312 (430)
+++
T Consensus 204 ~Np 206 (290)
T 1p9a_G 204 GNP 206 (290)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-14 Score=138.01 Aligned_cols=269 Identities=12% Similarity=0.071 Sum_probs=140.4
Q ss_pred ecccccccCccchhhhhhhhcccCCCCcceeeccccccceee-ccCCCCCCCCCCCccEEEeecC--cCCCcCCchhH--
Q 014100 26 KGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDC--TNMLSAIPANL-- 100 (430)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~~-- 100 (430)
.+..+.+.+-....+..++..+..+++|++|+++++. +... ....+.....+++|++|++++| ..+....|..+
T Consensus 7 ~~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~ 85 (386)
T 2ca6_A 7 EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85 (386)
T ss_dssp TTCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH
T ss_pred cCcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH
Confidence 3444455544557788888888889999999999885 4421 1000001256899999999987 23333334332
Q ss_pred ----HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc--cccCC---------
Q 014100 101 ----IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE--NIIEM--------- 165 (430)
Q Consensus 101 ----~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~~l--------- 165 (430)
+..+++|++|++++|. +... +....+.. +..+++|++|++++|. ++....... .+..+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~-l~~~----~~~~l~~~-l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~ 158 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNA-FGPT----AQEPLIDF-LSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNA 158 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCC-CCTT----THHHHHHH-HHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhCCcccEEECCCCc-CCHH----HHHHHHHH-HHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccC
Confidence 3678999999999884 3221 00111222 2567888888888764 322110000 01122
Q ss_pred CCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCcee-----ec
Q 014100 166 PELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH-----LW 240 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~-----~~ 240 (430)
++|++|++++|. ++... .. .+...+..+++|++|+++++ .++. +.
T Consensus 159 ~~L~~L~L~~n~-l~~~~----------------~~------------~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~ 208 (386)
T 2ca6_A 159 PPLRSIICGRNR-LENGS----------------MK------------EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLL 208 (386)
T ss_dssp CCCCEEECCSSC-CTGGG----------------HH------------HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHH
T ss_pred CCCcEEECCCCC-CCcHH----------------HH------------HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHH
Confidence 666666666654 21100 00 00011233456666666664 3431 11
Q ss_pred ccCchhhhhcccccEEeeccCccc----ccccCCcccCCCCCEEEEccCCCccccccc---ccc--ccccCccEEEEccc
Q 014100 241 KENDESNKAFANLIRLKISECSKL----QKLVTPSWHLENLATLEVSKCHGLINVLTL---STS--ESLVNLGRMKIADC 311 (430)
Q Consensus 241 ~~~~~~~~~l~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~--~~l~~L~~L~l~~c 311 (430)
+..+ ..+++|+.|++++|..- ..++..+..+++|+.|++++|. +...... ..+ ..+++|+.|++++|
T Consensus 209 ~~~l---~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 209 LEGL---AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp HTTG---GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred HHHh---hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 1122 45566666666665432 3444455566677777776654 3322100 011 22667777777665
Q ss_pred ccchh----hhcccccccCCcc-eeecccceeecccCC
Q 014100 312 KMIEQ----IIQLQVGEEAKGC-VVFEELGYLGLDCLP 344 (430)
Q Consensus 312 ~~l~~----~~~~~~~~~~~~~-~~~~~L~~L~l~~c~ 344 (430)
.--.. +. ... ..+++|+.|++.+++
T Consensus 285 ~i~~~g~~~l~--------~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 285 EIELDAVRTLK--------TVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCBHHHHHHHH--------HHHHHHCTTCCEEECTTSB
T ss_pred cCCHHHHHHHH--------HHHHhcCCCceEEEccCCc
Confidence 42221 21 111 125677777777653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.43 E-value=7.6e-13 Score=121.86 Aligned_cols=196 Identities=13% Similarity=0.151 Sum_probs=126.1
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccc
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 127 (430)
..+++|++|+++++. +..+ .+. ..+++|++|++++| .+... + .+..+++|++|++++| .+..+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~-~~l----~~l~~L~~L~l~~n-~l~~~-~--~l~~l~~L~~L~L~~n-~l~~~------ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV-QGI----QYLPNVRYLALGGN-KLHDI-S--ALKELTNLTYLILTGN-QLQSL------ 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECTTS-CCCCC-G--GGTTCTTCCEEECTTS-CCCCC------
T ss_pred ccccceeeeeeCCCC-cccc-ccc----ccCCCCcEEECCCC-CCCCc-h--hhcCCCCCCEEECCCC-ccCcc------
Confidence 346777888877665 4432 122 46778888888876 34442 3 2667788888888877 45444
Q ss_pred cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCccc
Q 014100 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLT 201 (430)
Q Consensus 128 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~ 201 (430)
+...+..+++|++|+++++. +..++... +..+++|++|++++|. ++.++ .++|+.|++++|.+.+..
T Consensus 101 ---~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 101 ---PNGVFDKLTNLKELVLVENQ-LQSLPDGV--FDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp ---CTTTTTTCTTCCEEECTTSC-CCCCCTTT--TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ---ChhHhcCCcCCCEEECCCCc-CCccCHHH--hccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccC
Confidence 34444677788888887753 44443321 4567788888887774 44443 357888888888766544
Q ss_pred CCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEE
Q 014100 202 SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLE 281 (430)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 281 (430)
+ ...+.+++|+.|+++++ .++.+++..+ ..+++|+.|++++++.. +.+++|+.|+
T Consensus 174 ~--------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N~~~-------~~~~~l~~l~ 228 (272)
T 3rfs_A 174 E--------------GVFDKLTQLKDLRLYQN-QLKSVPDGVF---DRLTSLQYIWLHDNPWD-------CTCPGIRYLS 228 (272)
T ss_dssp T--------------TTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSSCBC-------CCTTTTHHHH
T ss_pred H--------------HHhcCCccCCEEECCCC-cCCccCHHHH---hCCcCCCEEEccCCCcc-------ccCcHHHHHH
Confidence 1 12456789999999885 6777766555 77889999999887433 3455677776
Q ss_pred EccCCCccccc
Q 014100 282 VSKCHGLINVL 292 (430)
Q Consensus 282 l~~c~~l~~~~ 292 (430)
+..+.....+|
T Consensus 229 ~~~n~~~g~ip 239 (272)
T 3rfs_A 229 EWINKHSGVVR 239 (272)
T ss_dssp HHHHHTGGGBB
T ss_pred HHHHhCCCccc
Confidence 66544333333
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=116.27 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH 286 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 286 (430)
.+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .+..+++ .+..+++|+.|++++++
T Consensus 129 ~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 129 RLTKLKELRLNTN-QLQSIPAGAF---DKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCcccEEECcCC-cCCccCHHHc---CcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 3556666666553 5555544444 55566666666664 3333333 34556667777776653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.4e-12 Score=117.50 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCc---hhHHhhcCCCCEEEEecCCCccEeeccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIP---ANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 125 (430)
.+++|++|+++++. +....... .....+++|++|+++++. +....+ ...+..+++|++|++++| .+..+
T Consensus 89 ~~~~L~~L~l~~n~-l~~~~~~~-~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~---- 160 (310)
T 4glp_A 89 AYSRLKELTLEDLK-ITGTMPPL-PLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQA-HSPAF---- 160 (310)
T ss_dssp HHSCCCEEEEESCC-CBSCCCCC-SSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCC----
T ss_pred ccCceeEEEeeCCE-eccchhhh-hhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCC-Ccchh----
Confidence 34668888888775 33211111 000457788888888873 443222 111346788888888887 44444
Q ss_pred cccCCcCCCcccccccceeeccccccccc--cccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCC
Q 014100 126 ELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 126 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~ 203 (430)
+...+..+++|++|+++++...+. ++.... ...+++|++|++++|. ++.++. ..
T Consensus 161 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~---------------~~-- 216 (310)
T 4glp_A 161 -----SCEQVRAFPALTSLDLSDNPGLGERGLMAALC-PHKFPAIQNLALRNTG-METPTG---------------VC-- 216 (310)
T ss_dssp -----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC-TTSSCCCCSCBCCSSC-CCCHHH---------------HH--
T ss_pred -----hHHHhccCCCCCEEECCCCCCccchhhhHHHh-hhcCCCCCEEECCCCC-CCchHH---------------HH--
Confidence 333346778888888887643321 211111 3466777777777764 332210 00
Q ss_pred CcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEc
Q 014100 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 283 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 283 (430)
....+.+++|++|+++++ .++...+..+..+..+++|++|+++++ .++.+|..+. ++|+.|+++
T Consensus 217 ------------~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 217 ------------AALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp ------------HHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECC
T ss_pred ------------HHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECC
Confidence 000123455566666552 444442222211122256666666654 3445554432 566777776
Q ss_pred cCCCccccccccccccccCccEEEEccc
Q 014100 284 KCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 284 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
++. ++.++. ...+++|+.|+++++
T Consensus 281 ~N~-l~~~~~---~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 281 SNR-LNRAPQ---PDELPEVDNLTLDGN 304 (310)
T ss_dssp SCC-CCSCCC---TTSCCCCSCEECSST
T ss_pred CCc-CCCCch---hhhCCCccEEECcCC
Confidence 543 444432 345667777777664
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-11 Score=111.85 Aligned_cols=83 Identities=23% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .+..+++ .+..+++|+.|+++++ .+..++.. .+..+
T Consensus 106 l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l 178 (251)
T 3m19_A 106 LTQLDKLYLGGN-QLKSLPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRL 178 (251)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTC
T ss_pred cCCCCEEEcCCC-cCCCcChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHH-HHhCC
Confidence 344455555442 4444433333 44455555555553 3333333 2344555555555543 23333321 13344
Q ss_pred cCccEEEEccc
Q 014100 301 VNLGRMKIADC 311 (430)
Q Consensus 301 ~~L~~L~l~~c 311 (430)
++|+.|+++++
T Consensus 179 ~~L~~L~l~~N 189 (251)
T 3m19_A 179 GKLQTITLFGN 189 (251)
T ss_dssp TTCCEEECCSC
T ss_pred CCCCEEEeeCC
Confidence 55555555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-13 Score=133.16 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=148.6
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCC-------CCCCCC
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQAL-------PVSFFN 79 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~-------~~~~~~ 79 (430)
++.++..+..+++|+++.+.+... .......+...+..+++|++|+++++. +..+....+. ....++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTI-----GTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEE-----CHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGGSHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhcCCCccEEECCCCCC-----CHHHHHHHHHHHHhCCCccEEeCcccc-cCccccchhHHHHHHHHHHhhCC
Confidence 445556666788999999844311 113344566667889999999999874 2211111000 014689
Q ss_pred CccEEEeecCcCCCcCC---chhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccc---------cccceeecc
Q 014100 80 NLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF---------PKLFELTLM 147 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l---------~~L~~L~l~ 147 (430)
+|++|++++| .+.... ....+..+++|++|++++|. +.... ....+.. ...+ ++|++|+++
T Consensus 95 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~----~~~l~~~-l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 95 KLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQA----GAKIARA-LQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp TCCEEECCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHH----HHHHHHH-HHHHHHHHHHHTCCCCCEEECC
T ss_pred cccEEECCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHH----HHHHHHH-HHHHhhhhhcccCCCCcEEECC
Confidence 9999999998 455421 11236789999999999984 43220 0000011 1233 899999999
Q ss_pred cccccc--ccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCC-cCCCCCC
Q 014100 148 DLPKLK--RFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFD-EKVAFPQ 224 (430)
Q Consensus 148 ~~~~l~--~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 224 (430)
++. ++ .++.....+..+++|++|++++|. ++.... ..+.. ....+++
T Consensus 168 ~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~----------------------------~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 168 RNR-LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGI----------------------------EHLLLEGLAYCQE 217 (386)
T ss_dssp SSC-CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHH----------------------------HHHHHTTGGGCTT
T ss_pred CCC-CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHH----------------------------HHHHHHHhhcCCC
Confidence 874 33 222110114567888888888875 321000 00001 2345677
Q ss_pred CcEEecccCCCceee----cccCchhhhhcccccEEeeccCccccc----ccCCc--ccCCCCCEEEEccCCCccc----
Q 014100 225 LRYLELSRLHKVQHL----WKENDESNKAFANLIRLKISECSKLQK----LVTPS--WHLENLATLEVSKCHGLIN---- 290 (430)
Q Consensus 225 L~~L~L~~~~~l~~~----~~~~~~~~~~l~~L~~L~l~~c~~l~~----l~~~~--~~l~~L~~L~l~~c~~l~~---- 290 (430)
|+.|+++++ .++.. .+..+ ..+++|++|++++|..-.. ++..+ ..+++|+.|++++|. +..
T Consensus 218 L~~L~Ls~n-~l~~~g~~~l~~~l---~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~ 292 (386)
T 2ca6_A 218 LKVLDLQDN-TFTHLGSSALAIAL---KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVR 292 (386)
T ss_dssp CCEEECCSS-CCHHHHHHHHHHHG---GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHH
T ss_pred ccEEECcCC-CCCcHHHHHHHHHH---ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHH
Confidence 778887774 44311 11222 5667788888877753322 33333 237788888888765 443
Q ss_pred -cccccccccccCccEEEEcccc
Q 014100 291 -VLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 291 -~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.. +..++++|++|++++|+
T Consensus 293 ~l~~~-l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 293 TLKTV-IDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHH-HHHHCTTCCEEECTTSB
T ss_pred HHHHH-HHhcCCCceEEEccCCc
Confidence 3321 22457888888888765
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-12 Score=121.12 Aligned_cols=229 Identities=14% Similarity=0.059 Sum_probs=135.6
Q ss_pred CCccEEEeecCcCCCcCCchh--HHhhcCCCCEEEEecCCCccEeeccccccCCcCCCc-ccccccceeecccccccccc
Q 014100 79 NNLRHLVVDDCTNMLSAIPAN--LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIG-PLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l~~~ 155 (430)
..++.|.+.++. +....... -...+++|++|++++|.-.... |..++ ..+++|++|+++++.--...
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTM---------PPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCC---------CCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccch---------hhhhhhccCCCCCEEEeecccccchh
Confidence 345666666652 22110000 1223566888888777322222 22222 56677888887775422211
Q ss_pred ccC-cccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEE
Q 014100 156 CNF-TENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 156 ~~~-~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
+.. ......+++|++|++++|.. +..+ .++|++|++++|.+.+...+ ......+.+++|++|
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAHS-PAFSCEQVRAFPALTSLDLSDNPGLGERGL----------MAALCPHKFPAIQNL 202 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCSS-CCCCTTSCCCCTTCCEEECCSCTTCHHHHH----------HTTSCTTSSCCCCSC
T ss_pred hhhHHHHhhhccCCCEEEeeCCCc-chhhHHHhccCCCCCEEECCCCCCccchhh----------hHHHhhhcCCCCCEE
Confidence 100 00134577888888877763 3332 45788888888875431100 000113578899999
Q ss_pred ecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccC---CCCCEEEEccCCCccccccccccccccCccE
Q 014100 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL---ENLATLEVSKCHGLINVLTLSTSESLVNLGR 305 (430)
Q Consensus 229 ~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 305 (430)
+++++ .++.++.........+++|++|+++++..-...|+.+..+ ++|+.|+++++ .++.+|.. + .++|++
T Consensus 203 ~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~--~--~~~L~~ 276 (310)
T 4glp_A 203 ALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG--L--PAKLRV 276 (310)
T ss_dssp BCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC--C--CSCCSC
T ss_pred ECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh--h--cCCCCE
Confidence 99995 6765433211112577999999999976544446666665 69999999886 46676642 2 389999
Q ss_pred EEEcccccchhhhcccccccCCcceeecccceeecccCC
Q 014100 306 MKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 306 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
|+++++. ++.+. ....+++|+.|++.+.+
T Consensus 277 L~Ls~N~-l~~~~---------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 277 LDLSSNR-LNRAP---------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSCC-CCSCC---------CTTSCCCCSCEECSSTT
T ss_pred EECCCCc-CCCCc---------hhhhCCCccEEECcCCC
Confidence 9998864 44432 12237899999999864
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=113.47 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=92.3
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|+.|++++| .+..++. +..+++|++|++++| .+..+ +. +..+++|+.|+++++ .++.++
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~---------~~--l~~l~~L~~L~l~~n-~l~~~~ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------KP--LANLKNLGWLFLDEN-KVKDLS 106 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------GG--GTTCTTCCEEECCSS-CCCCGG
T ss_pred hcCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCC---------cc--cccCCCCCEEECCCC-cCCCCh
Confidence 4666777777766 3444322 556777777777766 34333 12 256667777777664 344433
Q ss_pred cCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
. +..+++|++|++++|. ++.++ ....+++|+.|+++++ .+
T Consensus 107 ~----l~~l~~L~~L~L~~n~-i~~~~----------------------------------~l~~l~~L~~L~l~~n-~l 146 (291)
T 1h6t_A 107 S----LKDLKKLKSLSLEHNG-ISDIN----------------------------------GLVHLPQLESLYLGNN-KI 146 (291)
T ss_dssp G----GTTCTTCCEEECTTSC-CCCCG----------------------------------GGGGCTTCCEEECCSS-CC
T ss_pred h----hccCCCCCEEECCCCc-CCCCh----------------------------------hhcCCCCCCEEEccCC-cC
Confidence 2 4556666666666553 22211 1234556666666653 44
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccc
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+.+ ..+ ..+++|+.|++++| .+..+++ +..+++|+.|+++++ .++.++. +..+++|+.|++++++
T Consensus 147 ~~~--~~l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 147 TDI--TVL---SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCC--GGG---GGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred Ccc--hhh---ccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 443 122 55666666666665 3344433 556666666666665 3444432 4556677777776653
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-11 Score=111.38 Aligned_cols=170 Identities=17% Similarity=0.234 Sum_probs=121.2
Q ss_pred HhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcc
Q 014100 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 101 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 180 (430)
...+++|++|++++| .+..+ + + +..+++|++|+++++ .++.++. +..+++|++|++++|. ++
T Consensus 42 ~~~l~~L~~L~l~~~-~i~~~---------~-~-~~~l~~L~~L~L~~n-~l~~~~~----l~~l~~L~~L~l~~n~-l~ 103 (291)
T 1h6t_A 42 QNELNSIDQIIANNS-DIKSV---------Q-G-IQYLPNVTKLFLNGN-KLTDIKP----LANLKNLGWLFLDENK-VK 103 (291)
T ss_dssp HHHHHTCCEEECTTS-CCCCC---------T-T-GGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CC
T ss_pred hhhcCcccEEEccCC-CcccC---------h-h-HhcCCCCCEEEccCC-ccCCCcc----cccCCCCCEEECCCCc-CC
Confidence 446888999999887 45444 2 2 367788888888875 3544432 5566777777776654 22
Q ss_pred cccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeecc
Q 014100 181 TFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE 260 (430)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 260 (430)
+. ...+.+++|+.|+++++ .++.+ ..+ ..+++|+.|++++
T Consensus 104 ------------------~~----------------~~l~~l~~L~~L~L~~n-~i~~~--~~l---~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 104 ------------------DL----------------SSLKDLKKLKSLSLEHN-GISDI--NGL---VHLPQLESLYLGN 143 (291)
T ss_dssp ------------------CG----------------GGGTTCTTCCEEECTTS-CCCCC--GGG---GGCTTCCEEECCS
T ss_pred ------------------CC----------------hhhccCCCCCEEECCCC-cCCCC--hhh---cCCCCCCEEEccC
Confidence 21 12567889999999985 66665 233 7889999999999
Q ss_pred CcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeec
Q 014100 261 CSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGL 340 (430)
Q Consensus 261 c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 340 (430)
| .+..+ +.+..+++|+.|++++| .+..++. +..+++|+.|+++++ .+.++. ....+++|+.|++
T Consensus 144 n-~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~---------~l~~l~~L~~L~l 207 (291)
T 1h6t_A 144 N-KITDI-TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLR---------ALAGLKNLDVLEL 207 (291)
T ss_dssp S-CCCCC-GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCG---------GGTTCTTCSEEEE
T ss_pred C-cCCcc-hhhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCCh---------hhccCCCCCEEEC
Confidence 7 45555 46778999999999987 4666543 678999999999987 444432 2334889999999
Q ss_pred ccCC
Q 014100 341 DCLP 344 (430)
Q Consensus 341 ~~c~ 344 (430)
.+++
T Consensus 208 ~~n~ 211 (291)
T 1h6t_A 208 FSQE 211 (291)
T ss_dssp EEEE
T ss_pred cCCc
Confidence 9863
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=104.49 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=38.5
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
.+++|+.|+++++ .++...+..+ ..+++|+.|++++|..++.++ .+..+++|+.|++++|. +.+++ .+..+
T Consensus 110 ~l~~L~~L~Ls~n-~i~~~~~~~l---~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~---~l~~l 180 (197)
T 4ezg_A 110 GLTSLTLLDISHS-AHDDSILTKI---NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR---GIEDF 180 (197)
T ss_dssp TCTTCCEEECCSS-BCBGGGHHHH---TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT---TGGGC
T ss_pred CCCCCCEEEecCC-ccCcHhHHHH---hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH---HhccC
Confidence 3445555555543 3332222222 444555555555554344443 34455556666665543 33333 13445
Q ss_pred cCccEEEEccc
Q 014100 301 VNLGRMKIADC 311 (430)
Q Consensus 301 ~~L~~L~l~~c 311 (430)
++|+.|++++.
T Consensus 181 ~~L~~L~l~~N 191 (197)
T 4ezg_A 181 PKLNQLYAFSQ 191 (197)
T ss_dssp SSCCEEEECBC
T ss_pred CCCCEEEeeCc
Confidence 56666666543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-12 Score=125.36 Aligned_cols=67 Identities=10% Similarity=-0.040 Sum_probs=37.8
Q ss_pred ccCCCCcceeeccccccceeeccCC-CCCCCCCC-CccEEEeecCcCCCcCCchhHHhhc-----CCCCEEEEecCC
Q 014100 47 MIGFRDIKYLQLGHFPRLQEIWHGQ-ALPVSFFN-NLRHLVVDDCTNMLSAIPANLIRCL-----NNLRWLEVRNCD 116 (430)
Q Consensus 47 l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~c~ 116 (430)
+...++|++|+++++. +....... ......++ +|++|++++| .+....+.. +..+ ++|++|++++|.
T Consensus 18 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC
T ss_pred HhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc
Confidence 3344458888888776 54322100 00013456 7888888877 455544433 3333 778888888773
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-11 Score=104.94 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=79.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..++ +. ..+++|++|++++| .+... +. +..+++|++|++++| .+....
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~-~~--l~~l~~L~~L~l~~n-~l~~~~------ 104 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNY-NP--ISGLSNLERLRIMGK-DVTSDK------ 104 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCC-GG--GTTCTTCCEEEEECT-TCBGGG------
T ss_pred hcCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcc-hh--hhcCCCCCEEEeECC-ccCccc------
Confidence 34566666666554 44332 22 45666666666665 33332 21 555666666666665 232210
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCccee
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+.. +..+++|++|+++++.-....+.. +..+++|++|++++|..++.++
T Consensus 105 --~~~-l~~l~~L~~L~Ls~n~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~------------------------- 153 (197)
T 4ezg_A 105 --IPN-LSGLTSLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIM------------------------- 153 (197)
T ss_dssp --SCC-CTTCTTCCEEECCSSBCBGGGHHH---HTTCSSCCEEECCSCTBCCCCG-------------------------
T ss_pred --Chh-hcCCCCCCEEEecCCccCcHhHHH---HhhCCCCCEEEccCCCCccccH-------------------------
Confidence 122 255666666666664322112211 4455666666666654333322
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
....+++|+.|+++++ .++.+. .+ ..+++|+.|+++++
T Consensus 154 ---------~l~~l~~L~~L~l~~n-~i~~~~--~l---~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 154 ---------PLKTLPELKSLNIQFD-GVHDYR--GI---EDFPKLNQLYAFSQ 191 (197)
T ss_dssp ---------GGGGCSSCCEEECTTB-CCCCCT--TG---GGCSSCCEEEECBC
T ss_pred ---------hhcCCCCCCEEECCCC-CCcChH--Hh---ccCCCCCEEEeeCc
Confidence 2345667777777764 566654 23 66677777777664
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.1e-11 Score=122.37 Aligned_cols=123 Identities=15% Similarity=0.313 Sum_probs=69.9
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+++|+.|+++++. +..+. . ...+++|+.|++++| .+..+++ +..+++|+.|++++| .+..+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~----l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-G----IQYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDL------- 102 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-T----GGGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC-------
T ss_pred cCCCCCEEECcCCC-CCCCh-H----HccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCC-------
Confidence 45667777777665 44332 1 245777777777776 4555433 556777777777776 44333
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCc
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~ 199 (430)
+ . +..+++|+.|+++++. +..++. +..+++|+.|++++|. ++.++ .++|+.|++++|.+.+
T Consensus 103 --~-~-l~~l~~L~~L~Ls~N~-l~~l~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 103 --S-S-LKDLKKLKSLSLEHNG-ISDING----LVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp --T-T-STTCTTCCEEECTTSC-CCCCGG----GGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred --h-h-hccCCCCCEEEecCCC-CCCCcc----ccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCC
Confidence 1 2 2566777777777653 444321 5566777777776654 22222 3344444444444433
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.20 E-value=7.3e-11 Score=120.50 Aligned_cols=165 Identities=18% Similarity=0.219 Sum_probs=108.2
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|++++| .+..++. +..+++|+.|++++| .+..+ +. +..+++|+.|+++++ .+..+
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~~---l~~l~~L~~L~Ls~N-~l~~~---------~~--l~~l~~L~~L~Ls~N-~l~~l 102 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------KP--LTNLKNLGWLFLDEN-KIKDL 102 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCTT---GGGCTTCCEEECTTS-CCCCC---------GG--GGGCTTCCEEECCSS-CCCCC
T ss_pred hcCCCCCEEECcCC-CCCCChH---HccCCCCCEEEeeCC-CCCCC---------hh--hccCCCCCEEECcCC-CCCCC
Confidence 46889999999987 4665432 678999999999998 45544 22 378899999999986 45555
Q ss_pred ccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecc
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 231 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 231 (430)
+. +..+++|+.|++++|. ++.++ .++|+.|++++|.+.++. .+..+++|+.|+|+
T Consensus 103 ~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~----------------~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 103 SS----LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDIT----------------VLSRLTKLDTLSLE 161 (605)
T ss_dssp TT----STTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCCG----------------GGGSCTTCSEEECC
T ss_pred hh----hccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCch----------------hhcccCCCCEEECc
Confidence 42 7788899999998876 33333 456666666666654432 23455666666666
Q ss_pred cCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCC
Q 014100 232 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~ 286 (430)
++ .+..+.+ + ..+++|+.|++++| .+..++ .+..+++|+.|++++|+
T Consensus 162 ~N-~l~~~~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 162 DN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEE
T ss_pred CC-cCCCchh--h---ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCc
Confidence 64 4554433 2 55666666666665 334442 34556666666666553
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=116.46 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=73.9
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
.+|+.|+++++. +..++. .-+++|++|++++| .+..++ ..+++|++|++++| .+..+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp~------~l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N-~l~~i--------- 115 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLPD------NLPPQITVLEITQN-ALISLP-----ELPASLEYLDACDN-RLSTL--------- 115 (571)
T ss_dssp TTCSEEECCSSC-CSCCCS------CCCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCC---------
T ss_pred CCccEEEeCCCC-CCccCH------hHcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCC-CCCCc---------
Confidence 378899998775 554332 23578999999887 566544 24788999999888 55544
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCc
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~ 199 (430)
|. + .. +|+.|+++++ .++.+|. .+++|+.|++++|. ++.+| +++|++|++++|.+.+
T Consensus 116 p~-l-~~--~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 116 PE-L-PA--SLKHLDVDNN-QLTMLPE------LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CC-C-CT--TCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSC
T ss_pred ch-h-hc--CCCEEECCCC-cCCCCCC------cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCC
Confidence 33 2 22 8888888875 4554532 46777777777765 44444 3456666666665544
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-12 Score=120.89 Aligned_cols=239 Identities=11% Similarity=0.004 Sum_probs=115.3
Q ss_pred CCccEEEeecCcCCCcCCch---hHHhhcC-CCCEEEEecCCCccEeeccccccCCcCCCccc-----ccccceeecccc
Q 014100 79 NNLRHLVVDDCTNMLSAIPA---NLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPL-----FPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~---~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~-----l~~L~~L~l~~~ 149 (430)
++|++|++++| .+....+. ..+.+++ +|++|++++| .+..... .. +.. +++|++|+++++
T Consensus 22 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~--------~~-l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 22 HGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNS--------DE-LVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCH--------HH-HHHHHHTSCTTCCEEECCSS
T ss_pred CCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHH--------HH-HHHHHhccCCCccEEECcCC
Confidence 44777777776 35554431 2245566 6777777776 3332210 00 112 266777777765
Q ss_pred ccccccccCcc--cccCC-CCccEEEEecCCCccccc-----------CCcceEEEecCCCCCcccCCCcceeccCcccc
Q 014100 150 PKLKRFCNFTE--NIIEM-PELRYLAIENCPDMETFI-----------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPL 215 (430)
Q Consensus 150 ~~l~~~~~~~~--~~~~l-~~L~~L~l~~c~~l~~~~-----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 215 (430)
. ++....... .+..+ ++|++|++++|. ++..+ +.+|++|++++|.+.... ...+
T Consensus 91 ~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~----------~~~l 158 (362)
T 3goz_A 91 F-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS----------SDEL 158 (362)
T ss_dssp C-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC----------HHHH
T ss_pred c-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH----------HHHH
Confidence 3 332211100 01223 677777777665 34333 246777777777654311 0000
Q ss_pred CCcCCCCC-CCcEEecccCCCceeecccCch-hhhhc-ccccEEeeccCccccc-----ccCCccc-CCCCCEEEEccCC
Q 014100 216 FDEKVAFP-QLRYLELSRLHKVQHLWKENDE-SNKAF-ANLIRLKISECSKLQK-----LVTPSWH-LENLATLEVSKCH 286 (430)
Q Consensus 216 ~~~~~~~~-~L~~L~L~~~~~l~~~~~~~~~-~~~~l-~~L~~L~l~~c~~l~~-----l~~~~~~-l~~L~~L~l~~c~ 286 (430)
.......+ +|++|+++++ .++......+. ....+ ++|+.|++++|. ++. ++..+.. .++|+.|+++++.
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 01112233 7777777774 55544332221 01233 477777777764 332 3333333 3477777777753
Q ss_pred Ccccccc---ccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC
Q 014100 287 GLINVLT---LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 287 ~l~~~~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
+.+.+. ......+++|+.|++++|. +.++..............+++|+.|++++++
T Consensus 237 -l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 237 -LHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -CCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -CCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 443322 1123556778888887764 1111000001111122235667777777653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-10 Score=98.15 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=39.5
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
++|++|+++++. +..+.... ...+++|++|+++++ .+..+++ ..+..+++|++|++++| .+..+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~--------- 91 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGV---FDELTSLTQLYLGGN-KLQSLPN-GVFNKLTSLTYLNLSTN-QLQSL--------- 91 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCC---------
T ss_pred CCCcEEEcCCCc-cCcCChhh---hcccccCcEEECCCC-ccCccCh-hhcCCCCCcCEEECCCC-cCCcc---------
Confidence 456666666553 33222111 134556666666654 3444322 22445566666666655 33333
Q ss_pred cCCCcccccccceeecccc
Q 014100 131 KEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~ 149 (430)
+...+..+++|++|+++++
T Consensus 92 ~~~~~~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTN 110 (208)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHhHhcCccCCCEEEcCCC
Confidence 2333345555555555543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=105.61 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=87.5
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+.++..++++++. +.++. .. ..+++|++|++++| .+..++ . +..+++|++|++++| .+..+
T Consensus 17 ~l~~l~~l~l~~~~-i~~~~-~~----~~l~~L~~L~l~~n-~i~~l~-~--l~~l~~L~~L~L~~N-~i~~~------- 78 (263)
T 1xeu_A 17 GLANAVKQNLGKQS-VTDLV-SQ----KELSGVQNFNGDNS-NIQSLA-G--MQFFTNLKELHLSHN-QISDL------- 78 (263)
T ss_dssp HHHHHHHHHHTCSC-TTSEE-CH----HHHTTCSEEECTTS-CCCCCT-T--GGGCTTCCEEECCSS-CCCCC-------
T ss_pred HHHHHHHHHhcCCC-ccccc-ch----hhcCcCcEEECcCC-Ccccch-H--HhhCCCCCEEECCCC-ccCCC-------
Confidence 45556666666544 44332 11 45677777777776 455543 1 556777777777776 44444
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCccee
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+. +..+++|+.|+++++ .++.++. ... ++|+.|++++| .+.+..
T Consensus 79 --~~--l~~l~~L~~L~L~~N-~l~~l~~----~~~-~~L~~L~L~~N-------------------~l~~~~------- 122 (263)
T 1xeu_A 79 --SP--LKDLTKLEELSVNRN-RLKNLNG----IPS-ACLSRLFLDNN-------------------ELRDTD------- 122 (263)
T ss_dssp --GG--GTTCSSCCEEECCSS-CCSCCTT----CCC-SSCCEEECCSS-------------------CCSBSG-------
T ss_pred --hh--hccCCCCCEEECCCC-ccCCcCc----ccc-CcccEEEccCC-------------------ccCCCh-------
Confidence 22 356677777777764 3443322 111 44444444443 322211
Q ss_pred ccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccC
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 285 (430)
....+++|+.|+++++ .++.++ .+ ..+++|+.|+++++ .+..+ ..+..+++|+.|+++++
T Consensus 123 ---------~l~~l~~L~~L~Ls~N-~i~~~~--~l---~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 123 ---------SLIHLKNLEILSIRNN-KLKSIV--ML---GFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp ---------GGTTCTTCCEEECTTS-CCCBCG--GG---GGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred ---------hhcCcccccEEECCCC-cCCCCh--HH---ccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence 2345566666666663 455442 22 55566666666654 23333 33445555555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=105.62 Aligned_cols=154 Identities=17% Similarity=0.254 Sum_probs=104.7
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..++ .+..+++|++|+++++. +..+. +. ..+++|++|++++| .+...++ +.++++|++|++++| .
T Consensus 29 ~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~ 96 (263)
T 1xeu_A 29 QSVTDLV-SQKELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-R 96 (263)
T ss_dssp SCTTSEE-CHHHHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-C
T ss_pred CCccccc-chhhcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-c
Confidence 3344444 45678999999999885 66543 22 67899999999998 5676544 778999999999998 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEP 197 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~ 197 (430)
+..+ +.. .. ++|+.|+++++ .++.++. +..+++|+.|+++++. ++.++
T Consensus 97 l~~l---------~~~--~~-~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~Ls~N~-i~~~~-------------- 144 (263)
T 1xeu_A 97 LKNL---------NGI--PS-ACLSRLFLDNN-ELRDTDS----LIHLKNLEILSIRNNK-LKSIV-------------- 144 (263)
T ss_dssp CSCC---------TTC--CC-SSCCEEECCSS-CCSBSGG----GTTCTTCCEEECTTSC-CCBCG--------------
T ss_pred cCCc---------Ccc--cc-CcccEEEccCC-ccCCChh----hcCcccccEEECCCCc-CCCCh--------------
Confidence 5554 222 22 89999999986 4655532 6778888888888765 33322
Q ss_pred CcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 198 EKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
..+.+++|+.|+++++ .++.+ ..+ ..+++|+.|+++++
T Consensus 145 --------------------~l~~l~~L~~L~L~~N-~i~~~--~~l---~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 145 --------------------MLGFLSKLEVLDLHGN-EITNT--GGL---TRLKKVNWIDLTGQ 182 (263)
T ss_dssp --------------------GGGGCTTCCEEECTTS-CCCBC--TTS---TTCCCCCEEEEEEE
T ss_pred --------------------HHccCCCCCEEECCCC-cCcch--HHh---ccCCCCCEEeCCCC
Confidence 1344566666666663 45544 223 56666777777664
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=96.93 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=29.8
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccc-cCCcccCCCCCEEEEccCC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~ 286 (430)
.+++|++|++++ +.++.+.+..+ ..+++|+.|+++++. ++.+ |..+..+++|+.|++++++
T Consensus 103 ~l~~L~~L~Ls~-N~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRS-NRITCVGNDSF---IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTT-SCCCCBCTTSS---TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCCEEECCC-CcCCeECHhHc---CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 344555555554 24444444434 445555555555542 2322 3344455666666665543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.07 E-value=7e-10 Score=112.15 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=123.1
Q ss_pred ceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCch
Q 014100 19 KLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPA 98 (430)
Q Consensus 19 ~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 98 (430)
+|+.|.+ .++.+..+|..+ +++|++|+++++. +..++ ..+++|++|++++| .+..++.
T Consensus 60 ~L~~L~L----------s~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip-------~~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 60 QFSELQL----------NRLNLSSLPDNL--PPQITVLEITQNA-LISLP-------ELPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TCSEEEC----------CSSCCSCCCSCC--CTTCSEEECCSSC-CSCCC-------CCCTTCCEEECCSS-CCSCCCC-
T ss_pred CccEEEe----------CCCCCCccCHhH--cCCCCEEECcCCC-Ccccc-------cccCCCCEEEccCC-CCCCcch-
Confidence 6778887 334556677665 4899999999886 66433 45899999999998 6776544
Q ss_pred hHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCC
Q 014100 99 NLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 99 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 178 (430)
+.+ +|++|++++| .+..+ |. .+++|+.|+++++ .++.++. .+++|++|++++|.
T Consensus 118 --l~~--~L~~L~Ls~N-~l~~l---------p~----~l~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~- 171 (571)
T 3cvr_A 118 --LPA--SLKHLDVDNN-QLTML---------PE----LPALLEYINADNN-QLTMLPE------LPTSLEVLSVRNNQ- 171 (571)
T ss_dssp --CCT--TCCEEECCSS-CCSCC---------CC----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-
T ss_pred --hhc--CCCEEECCCC-cCCCC---------CC----cCccccEEeCCCC-ccCcCCC------cCCCcCEEECCCCC-
Confidence 322 9999999998 55555 33 5789999999986 4665543 57899999999986
Q ss_pred ccccc--CCcceEEEecCCCCCcccCCCcceeccCccccCCcC-CCCCCCcEEecccCCCceeecccCchhhhhcccccE
Q 014100 179 METFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR 255 (430)
Q Consensus 179 l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~ 255 (430)
++.+| .++|+.|++++|.+..++. +...+ ...+.|+.|++++ +.++.++.. + ..+++|+.
T Consensus 172 L~~lp~l~~~L~~L~Ls~N~L~~lp~------------~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~-l---~~l~~L~~ 234 (571)
T 3cvr_A 172 LTFLPELPESLEALDVSTNLLESLPA------------VPVRNHHSEETEIFFRCRE-NRITHIPEN-I---LSLDPTCT 234 (571)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSSCCC------------CC--------CCEEEECCS-SCCCCCCGG-G---GGSCTTEE
T ss_pred CCCcchhhCCCCEEECcCCCCCchhh------------HHHhhhcccccceEEecCC-CcceecCHH-H---hcCCCCCE
Confidence 55454 3678888888887665441 00000 0112237777776 366655432 2 44677777
Q ss_pred EeeccCcccccccC
Q 014100 256 LKISECSKLQKLVT 269 (430)
Q Consensus 256 L~l~~c~~l~~l~~ 269 (430)
|+++++.....+|.
T Consensus 235 L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 235 IILEDNPLSSRIRE 248 (571)
T ss_dssp EECCSSSCCHHHHH
T ss_pred EEeeCCcCCCcCHH
Confidence 77777654444443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=103.54 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=101.7
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCC-CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVS-FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
+.++.+|..+ .+.++.|+++++. +..+.... .. .+++|++|+++++ .+..+++.. +.++++|++|++++|
T Consensus 28 ~~l~~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~---~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 28 QQLPNVPQSL--PSYTALLDLSHNN-LSRLRAEW---TPTRLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSN- 98 (361)
T ss_dssp SCCSSCCSSC--CTTCSEEECCSSC-CCEECTTS---SSSCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-
T ss_pred CCcCccCccC--CCCCCEEECCCCC-CCccChhh---hhhcccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCC-
Confidence 4556676654 3458888888765 66554433 12 6788888888876 566654433 667888888888887
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCC
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
.+..+ +...+..+++|+.|+++++. +..+... .+..+++|+.|+++++. ++.++.
T Consensus 99 ~l~~~---------~~~~~~~l~~L~~L~L~~N~-i~~~~~~--~~~~l~~L~~L~L~~N~-l~~l~~------------ 153 (361)
T 2xot_A 99 HLHTL---------DEFLFSDLQALEVLLLYNNH-IVVVDRN--AFEDMAQLQKLYLSQNQ-ISRFPV------------ 153 (361)
T ss_dssp CCCEE---------CTTTTTTCTTCCEEECCSSC-CCEECTT--TTTTCTTCCEEECCSSC-CCSCCG------------
T ss_pred cCCcC---------CHHHhCCCcCCCEEECCCCc-ccEECHH--HhCCcccCCEEECCCCc-CCeeCH------------
Confidence 56666 44445777888888888753 4444221 14556677777766654 332221
Q ss_pred CCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhccc--ccEEeeccC
Q 014100 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFAN--LIRLKISEC 261 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~--L~~L~l~~c 261 (430)
..|.....+++|+.|++++ +.++.++...+ ..++. ++.|++.++
T Consensus 154 -----------------~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~---~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 154 -----------------ELIKDGNKLPKLMLLDLSS-NKLKKLPLTDL---QKLPAWVKNGLYLHNN 199 (361)
T ss_dssp -----------------GGTC----CTTCCEEECCS-SCCCCCCHHHH---HHSCHHHHTTEECCSS
T ss_pred -----------------HHhcCcccCCcCCEEECCC-CCCCccCHHHh---hhccHhhcceEEecCC
Confidence 1112224567788888877 46666554433 44554 366777654
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-09 Score=96.01 Aligned_cols=119 Identities=15% Similarity=0.157 Sum_probs=79.5
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+|..+. ++|++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~---~~~l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGA---FSPYKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSC-CCEECTTS---STTCTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCSS-C
T ss_pred CCcCcCCCccC--cCCCEEECCCCc-CCCcCHhH---hhCCCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCCC-c
Confidence 45566766553 688888888775 66544322 256788888888887 466554443 777888888888887 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ |..++..+++|+.|+++++ .+..++.. .+..+++|+.|+++++.
T Consensus 92 l~~l---------~~~~f~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 92 ITEL---------PKSLFEGLFSLQLLLLNAN-KINCLRVD--AFQDLHNLNLLSLYDNK 139 (220)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred CCcc---------CHhHccCCCCCCEEECCCC-CCCEeCHH--HcCCCCCCCEEECCCCc
Confidence 5555 5565677888888888875 45544322 14566777777776654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=96.80 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=75.2
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|..+. ++|++|+++++. +..+... ....+++|++|+++++ .+..+++ ..+.++++|++|++++| .
T Consensus 29 ~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 29 KRHASVPAGIP--TNAQILYLHDNQ-ITKLEPG---VFDSLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTT---TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-C
T ss_pred CCcCccCCCCC--CCCCEEEcCCCc-cCccCHH---HhhCccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCCC-c
Confidence 44566665543 778888888765 5533211 1256778888888876 4555433 33567888888888877 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|+.|+++++ .+..+|.. +..+++|+.|+++++.
T Consensus 100 l~~l---------~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 100 LTVL---------PSAVFDRLVHLKELFMCCN-KLTELPRG---IERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSS-CCCSCCTT---GGGCTTCSEEECCSSC
T ss_pred CCcc---------ChhHhCcchhhCeEeccCC-cccccCcc---cccCCCCCEEECCCCc
Confidence 5555 4444567788888888774 45566544 5667777777776653
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-09 Score=92.43 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=30.7
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCCEEEEccC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKC 285 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c 285 (430)
.+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .++.+++. +..+++|+.|+++++
T Consensus 98 ~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 98 KLTQLKELALNTN-QLQSLPDGVF---DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CccCCCEEEcCCC-cCcccCHhHh---ccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence 3455555555552 4444443333 45555666666554 33333332 345666666666655
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-09 Score=93.90 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=29.4
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCH 286 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~ 286 (430)
.+++|+.|++++ +.++.++ ..+ ..+++|+.|+++++ .+..+++ .+..+++|+.|++.+++
T Consensus 110 ~l~~L~~L~Ls~-N~l~~lp-~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 RLVHLKELFMCC-NKLTELP-RGI---ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TCTTCCEEECCS-SCCCSCC-TTG---GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cchhhCeEeccC-CcccccC-ccc---ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 344555555554 2444332 222 45555555555553 3344432 24455666666666543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.5e-09 Score=91.12 Aligned_cols=60 Identities=22% Similarity=0.265 Sum_probs=32.2
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccC
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 285 (430)
.+++|+.|++++ +.++.+.+..+ ..+++|+.|+++++ .++.+++ .+..+++|+.|+++++
T Consensus 102 ~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 102 GLFSLQLLLLNA-NKINCLRVDAF---QDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCC-CCCCEeCHHHc---CCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 455666666665 35555544444 55566666666654 3333332 2445566666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=5e-11 Score=120.95 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=109.9
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeec--------cCC-CCCCCCCCCccEEE
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIW--------HGQ-ALPVSFFNNLRHLV 85 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~--------~~~-~~~~~~~~~L~~L~ 85 (430)
...++|+.+.+ -.+.+..+|.++..+++|+.|+++++..+.... .+. +.....+++|+.|+
T Consensus 346 ~~~~~L~~L~L----------s~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCEL----------SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCC----------CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccC----------ChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCc
Confidence 34555666665 457788999999999999999986553111000 000 00013345555555
Q ss_pred -eecCcCCCcCCchh----HHhh--cCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 86 -VDDCTNMLSAIPAN----LIRC--LNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 86 -l~~c~~l~~~~~~~----~~~~--l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++.+ .+..+.... .+.. ..+|++|++++| .+..+ |. +..+++|+.|+++++ .++.+|..
T Consensus 416 ~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~l---------p~--~~~l~~L~~L~Ls~N-~l~~lp~~ 481 (567)
T 1dce_A 416 PMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVL---------CH--LEQLLLVTHLDLSHN-RLRALPPA 481 (567)
T ss_dssp GGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSC---------CC--GGGGTTCCEEECCSS-CCCCCCGG
T ss_pred chhhc-ccchhhhhhhhcccccccCccCceEEEecCC-CCCCC---------cC--ccccccCcEeecCcc-cccccchh
Confidence 2221 111111000 0111 124666777666 44444 32 356666777777664 34455443
Q ss_pred cccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCcee
Q 014100 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 159 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 238 (430)
+..+++|+.|+++++. +.+++ ..+.+++|+.|++++ +.++.
T Consensus 482 ---~~~l~~L~~L~Ls~N~-------------------l~~lp----------------~l~~l~~L~~L~Ls~-N~l~~ 522 (567)
T 1dce_A 482 ---LAALRCLEVLQASDNA-------------------LENVD----------------GVANLPRLQELLLCN-NRLQQ 522 (567)
T ss_dssp ---GGGCTTCCEEECCSSC-------------------CCCCG----------------GGTTCSSCCEEECCS-SCCCS
T ss_pred ---hhcCCCCCEEECCCCC-------------------CCCCc----------------ccCCCCCCcEEECCC-CCCCC
Confidence 5566666666666543 33211 245677888888887 46766
Q ss_pred ec-ccCchhhhhcccccEEeeccCcccccccCCcc----cCCCCCEEE
Q 014100 239 LW-KENDESNKAFANLIRLKISECSKLQKLVTPSW----HLENLATLE 281 (430)
Q Consensus 239 ~~-~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----~l~~L~~L~ 281 (430)
+. +..+ ..+++|+.|+++++ .++.+|+... .+++|+.|+
T Consensus 523 ~~~p~~l---~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 523 SAAIQPL---VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSTTGGG---GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCcHHH---hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 64 4555 77888888888886 4555544332 367787775
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=96.48 Aligned_cols=86 Identities=17% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCC-EEEEccCCCcccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLA-TLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~ 299 (430)
+++|+++++.++ +++.++...+ ..+.+|+.+++.+. +..++.. +..+++|+ .+.+.. .++.+... .+.+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~-aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG-AFMG 295 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTT-TTTT
T ss_pred cCCCeEEECCCC-CcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchh-hhhC
Confidence 678999999873 6888887777 88889999998773 6666543 45778888 888876 56666544 3567
Q ss_pred ccCccEEEEcccccchhh
Q 014100 300 LVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~ 317 (430)
|++|+.+++.. +.++.+
T Consensus 296 c~~L~~l~l~~-n~i~~I 312 (329)
T 3sb4_A 296 CDNLRYVLATG-DKITTL 312 (329)
T ss_dssp CTTEEEEEECS-SCCCEE
T ss_pred CccCCEEEeCC-CccCcc
Confidence 88899998854 244444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-11 Score=122.93 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=42.5
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
.+.+++|+.|+++++ .++.++ ..+ ..+++|+.|+++++ .++.+| .+..+++|+.|+++++ .++.+.....+.
T Consensus 459 ~~~l~~L~~L~Ls~N-~l~~lp-~~~---~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~ 530 (567)
T 1dce_A 459 LEQLLLVTHLDLSHN-RLRALP-PAL---AALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV 530 (567)
T ss_dssp GGGGTTCCEEECCSS-CCCCCC-GGG---GGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred ccccccCcEeecCcc-cccccc-hhh---hcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHh
Confidence 344556666666653 455442 233 55566666666654 344444 4555566666666554 233331011244
Q ss_pred cccCccEEEEccc
Q 014100 299 SLVNLGRMKIADC 311 (430)
Q Consensus 299 ~l~~L~~L~l~~c 311 (430)
.+++|+.|+++++
T Consensus 531 ~l~~L~~L~L~~N 543 (567)
T 1dce_A 531 SCPRLVLLNLQGN 543 (567)
T ss_dssp GCTTCCEEECTTS
T ss_pred cCCCCCEEEecCC
Confidence 5555555555554
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=91.75 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=54.1
Q ss_pred hhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe
Q 014100 42 KCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 42 ~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 121 (430)
.+|..+..+++|++|+++++. +..+ .. ...+++|++|++++| .+...++. .+..+++|++|++++| .+..+
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~-l~~~-~~----~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~ 110 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVG-LISV-SN----LPKLPKLKKLELSEN-RIFGGLDM-LAEKLPNLTHLNLSGN-KLKDI 110 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSC-CCCC-SS----CCCCSSCCEEEEESC-CCCSCCCH-HHHHCTTCCEEECBSS-SCCSS
T ss_pred hHHHHHHhCCCCCEEeCcCCC-CCCh-hh----hccCCCCCEEECcCC-cCchHHHH-HHhhCCCCCEEeccCC-ccCcc
Confidence 344444555566666666554 4432 11 134556666666655 33332222 2444666666666655 33332
Q ss_pred eccccccCCcCCCcccccccceeeccccccccccccC-cccccCCCCccEEEEecCC
Q 014100 122 LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF-TENIIEMPELRYLAIENCP 177 (430)
Q Consensus 122 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~l~~L~~L~l~~c~ 177 (430)
.. +.. +..+++|+.|+++++. +..++.. ...+..+++|++|++.+|.
T Consensus 111 ~~-------~~~-l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 111 ST-------LEP-LKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GG-------GGG-GSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hh-------HHH-HhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 10 011 2445556666665542 3333220 0013445555555555554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=97.93 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=38.9
Q ss_pred CCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCc----ccCCCCCEEEEccCCCccccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS----WHLENLATLEVSKCHGLINVLTLST 296 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~ 296 (430)
.+++|+.|+|++ +.++.+.+..+ ..+++|+.|+++++ .+..+|... ..+++|+.|+++++ .++.++.. .
T Consensus 110 ~l~~L~~L~L~~-N~i~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~ 182 (361)
T 2xot_A 110 DLQALEVLLLYN-NHIVVVDRNAF---EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-D 182 (361)
T ss_dssp TCTTCCEEECCS-SCCCEECTTTT---TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-H
T ss_pred CCcCCCEEECCC-CcccEECHHHh---CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-H
Confidence 345555555555 24554444444 55555555555553 344444332 34566666666553 34444321 1
Q ss_pred cccccC--ccEEEEcc
Q 014100 297 SESLVN--LGRMKIAD 310 (430)
Q Consensus 297 ~~~l~~--L~~L~l~~ 310 (430)
+..++. |+.|++.+
T Consensus 183 ~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHN 198 (361)
T ss_dssp HHHSCHHHHTTEECCS
T ss_pred hhhccHhhcceEEecC
Confidence 233333 35566554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-08 Score=88.34 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=21.3
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
..+++|+.|++++ +.++.+.+..+ ..+++|+.|+++++
T Consensus 126 ~~l~~L~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~N 163 (220)
T 2v70_A 126 IGLSSVRLLSLYD-NQITTVAPGAF---DTLHSLSTLNLLAN 163 (220)
T ss_dssp TTCTTCSEEECTT-SCCCCBCTTTT---TTCTTCCEEECCSC
T ss_pred CCCccCCEEECCC-CcCCEECHHHh---cCCCCCCEEEecCc
Confidence 3455666666665 35555544444 55566666666554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-09 Score=88.45 Aligned_cols=130 Identities=18% Similarity=0.251 Sum_probs=80.3
Q ss_pred ccceeeeEeecccccccCccchhhh--hhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCc
Q 014100 17 TPKLHEVQVKGELRRWEGNLNSTIQ--KCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS 94 (430)
Q Consensus 17 ~~~L~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 94 (430)
.++|+.+.+ .++.+. .+|..+..+++|++|+++++. +..+ .. ...+++|++|++++| .+..
T Consensus 16 ~~~l~~L~l----------~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~----~~~l~~L~~L~Ls~n-~i~~ 78 (149)
T 2je0_A 16 PSDVKELVL----------DNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-AN----LPKLNKLKKLELSDN-RVSG 78 (149)
T ss_dssp GGGCSEEEC----------TTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TT----CCCCTTCCEEECCSS-CCCS
T ss_pred CccCeEEEc----------cCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hh----hhcCCCCCEEECCCC-cccc
Confidence 466777777 223344 566666778888888888775 5543 22 256788888888877 4555
Q ss_pred CCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC-cccccCCCCccEEEE
Q 014100 95 AIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF-TENIIEMPELRYLAI 173 (430)
Q Consensus 95 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~l~~L~~L~l 173 (430)
..|. .+.++++|++|++++| .+..+.. +.. +..+++|++|+++++ .+..++.. ...+..+++|+.|++
T Consensus 79 ~~~~-~~~~l~~L~~L~ls~N-~i~~~~~-------~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 79 GLEV-LAEKCPNLTHLNLSGN-KIKDLST-------IEP-LKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTHH-HHHHCTTCCEEECTTS-CCCSHHH-------HGG-GGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hHHH-HhhhCCCCCEEECCCC-cCCChHH-------HHH-HhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 3333 3666888888888887 3443310 122 367788888888876 34444330 011556777777765
Q ss_pred e
Q 014100 174 E 174 (430)
Q Consensus 174 ~ 174 (430)
+
T Consensus 148 ~ 148 (149)
T 2je0_A 148 Y 148 (149)
T ss_dssp B
T ss_pred C
Confidence 4
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-08 Score=87.07 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=77.7
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+|..+. .+|++|+++++. +..+.... ....+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 18 ~~l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~ 89 (192)
T 1w8a_A 18 RGLKEIPRDIP--LHTTELLLNDNE-LGRISSDG--LFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-K 89 (192)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSCC-CCSBCCSC--SGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-C
T ss_pred CCcCcCccCCC--CCCCEEECCCCc-CCccCCcc--ccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-c
Confidence 45566776553 388888888775 55433210 1256788888888887 566654443 677888888888887 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|++|+++++. +..+... .+..+++|++|++.+++
T Consensus 90 l~~~---------~~~~~~~l~~L~~L~L~~N~-l~~~~~~--~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEI---------SNKMFLGLHQLKTLNLYDNQ-ISCVMPG--SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEE---------CSSSSTTCTTCCEEECCSSC-CCEECTT--SSTTCTTCCEEECTTCC
T ss_pred CCcc---------CHHHhcCCCCCCEEECCCCc-CCeeCHH--HhhcCCCCCEEEeCCCC
Confidence 6665 34434777888888888753 4444221 15567777777776655
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.3e-08 Score=91.33 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=61.3
Q ss_pred CCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccc-eeecccCCCCceecCC
Q 014100 274 LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG-YLGLDCLPSLTSFCLG 352 (430)
Q Consensus 274 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~~~~~ 352 (430)
+++|+.+++.++ .++.++... +.++.+|+++++.+. ++.+... ....+++|+ .+.+.+ +++.++..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEchh
Confidence 567777777754 366665542 456777888777652 3333210 112256677 777765 67777653
Q ss_pred CcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEe
Q 014100 353 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVK 389 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~ 389 (430)
.+..|++|+.+++.+ ..++.++.. +..+++|+.|.
T Consensus 292 -aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 292 -AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred -hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 234678888888754 356566553 55677887765
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=85.88 Aligned_cols=12 Identities=17% Similarity=0.113 Sum_probs=7.3
Q ss_pred CCCccEEEeccC
Q 014100 358 FPSLEHVVVRQC 369 (430)
Q Consensus 358 ~~~L~~L~l~~c 369 (430)
+++|++|++.+|
T Consensus 146 l~~L~~L~l~~n 157 (168)
T 2ell_A 146 LPQLTYLDGYDR 157 (168)
T ss_dssp CSSCCEETTEET
T ss_pred CccCcEecCCCC
Confidence 566666666555
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-08 Score=85.96 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=70.6
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+|..+ .++|++|+++++. +..++... ..+++|++|+++++ .+..+++. .+.++++|++|++++| .
T Consensus 20 ~~l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~----~~l~~L~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 20 KGLKVLPKGI--PRDVTELYLDGNQ-FTLVPKEL----SNYKHLTLIDLSNN-RISTLSNQ-SFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp SCCSSCCSCC--CTTCCEEECCSSC-CCSCCGGG----GGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-C
T ss_pred CCCCcCCCCC--CCCCCEEECCCCc-CchhHHHh----hcccCCCEEECCCC-cCCEeCHh-HccCCCCCCEEECCCC-c
Confidence 4455666554 3577777777665 55443222 56777777777776 45554433 2667777777777776 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|+.|+++++ .++.++... ...+++|+.|++.+++
T Consensus 90 l~~i---------~~~~f~~l~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCI---------PPRTFDGLKSLRLLSLHGN-DISVVPEGA--FNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBC---------CTTTTTTCTTCCEEECCSS-CCCBCCTTT--TTTCTTCCEEECCSSC
T ss_pred cCEe---------CHHHhCCCCCCCEEECCCC-CCCeeChhh--hhcCccccEEEeCCCC
Confidence 5544 3333466777777777764 455554321 3456666666666554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-08 Score=105.50 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=78.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+...+..+..+++|+.|+++++. +..++... ..+++|++|+|++| .+..++ .. +.++++|++|++++| .
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~l~~L~~L~Ls~N-~l~~lp-~~-~~~l~~L~~L~Ls~N-~ 281 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANI----FKYDFLTRLYLNGN-SLTELP-AE-IKNLSNLRVLDLSHN-R 281 (727)
T ss_dssp -----------CCCCCCEEECTTSC-CSCCCGGG----GGCCSCSCCBCTTS-CCSCCC-GG-GGGGTTCCEEECTTS-C
T ss_pred cceecChhhhccCCCCcEEECCCCC-CCCCChhh----cCCCCCCEEEeeCC-cCcccC-hh-hhCCCCCCEEeCcCC-c
Confidence 3344455667778888888888776 55544444 56788888888887 566543 33 677888888888887 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 178 (430)
+..+ |..+ ..+++|++|+|+++ .++.+|.. +..+++|++|+++++..
T Consensus 282 l~~l---------p~~~-~~l~~L~~L~L~~N-~l~~lp~~---~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 282 LTSL---------PAEL-GSCFQLKYFYFFDN-MVTTLPWE---FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSSC---------CSSG-GGGTTCSEEECCSS-CCCCCCSS---TTSCTTCCCEECTTSCC
T ss_pred CCcc---------Chhh-cCCCCCCEEECCCC-CCCccChh---hhcCCCccEEeCCCCcc
Confidence 5555 5554 77888888888876 56677655 77788888888888763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-08 Score=82.89 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=40.8
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 299 (430)
..+++|+.|+++++ .++.+ ..+ ..+++|++|+++++.....+|.....+++|+.|+++++. ++.++....+..
T Consensus 39 ~~l~~L~~L~l~~n-~l~~~--~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~ 111 (149)
T 2je0_A 39 DEFEELEFLSTINV-GLTSI--ANL---PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKK 111 (149)
T ss_dssp TTCTTCCEEECTTS-CCCCC--TTC---CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGG
T ss_pred hhcCCCcEEECcCC-CCCCc--hhh---hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhh
Confidence 34556666666553 44443 222 455556666665543322243333345556666665543 333321112344
Q ss_pred ccCccEEEEccc
Q 014100 300 LVNLGRMKIADC 311 (430)
Q Consensus 300 l~~L~~L~l~~c 311 (430)
+++|++|++++|
T Consensus 112 l~~L~~L~l~~N 123 (149)
T 2je0_A 112 LENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEeCcCC
Confidence 555555555554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.68 E-value=5.4e-08 Score=82.94 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=54.1
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC--CcccCCCCCEEEEccCCCccccccc--
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT--PSWHLENLATLEVSKCHGLINVLTL-- 294 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~~~~-- 294 (430)
.+.+++|+.|+++++ .++.+++..+ ..+++|+.|+++++ .+..+|. .+..+++|+.|++++++ +..++..
T Consensus 60 l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~ 133 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRL 133 (176)
T ss_dssp CCCCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHH
T ss_pred cccCCCCCEEECCCC-cccccCcchh---hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHH
Confidence 455677777777773 6666654433 66777777777775 3455554 45567777777777654 3333321
Q ss_pred cccccccCccEEEEcccc
Q 014100 295 STSESLVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c~ 312 (430)
..+..+++|+.|+++++.
T Consensus 134 ~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHCTTCSEETTEECC
T ss_pred HHHHHCCccceeCCCcCC
Confidence 014556777777776654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-08 Score=85.94 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=51.6
Q ss_pred CcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCc
Q 014100 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 131 (430)
+|++|+++++. +..+ ... ..+++|++|++++| .+..+++ ..+..+++|++|++++| .+..+ |
T Consensus 43 ~L~~L~Ls~N~-l~~~-~~l----~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~---------~ 104 (176)
T 1a9n_A 43 QFDAIDFSDNE-IRKL-DGF----PLLRRLKTLLVNNN-RICRIGE-GLDQALPDLTELILTNN-SLVEL---------G 104 (176)
T ss_dssp CCSEEECCSSC-CCEE-CCC----CCCSSCCEEECCSS-CCCEECS-CHHHHCTTCCEEECCSC-CCCCG---------G
T ss_pred CCCEEECCCCC-CCcc-ccc----ccCCCCCEEECCCC-cccccCc-chhhcCCCCCEEECCCC-cCCcc---------h
Confidence 66666666554 4443 111 45566666666665 3444332 22455666666666665 33333 1
Q ss_pred C-CCcccccccceeeccccccccccccCc-ccccCCCCccEEEEecCC
Q 014100 132 E-HIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMPELRYLAIENCP 177 (430)
Q Consensus 132 ~-~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~l~~L~~L~l~~c~ 177 (430)
. ..+..+++|+.|++++++ +..++... ..+..+++|+.|+++++.
T Consensus 105 ~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 105 DLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp GGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 1 112455666666666543 33332210 003445555555555543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-08 Score=84.23 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=87.8
Q ss_pred cccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEe
Q 014100 7 MKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVV 86 (430)
Q Consensus 7 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l 86 (430)
++.+|.++ .++|+++.+ .++.+..+|..+..+++|++|+++++. ++.+.... ...+++|++|++
T Consensus 22 l~~ip~~~--~~~l~~L~L----------~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~---f~~l~~L~~L~L 85 (193)
T 2wfh_A 22 LKVLPKGI--PRDVTELYL----------DGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQS---FSNMTQLLTLIL 85 (193)
T ss_dssp CSSCCSCC--CTTCCEEEC----------CSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEEC
T ss_pred CCcCCCCC--CCCCCEEEC----------CCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhH---ccCCCCCCEEEC
Confidence 34445443 357888888 446667788888899999999999876 66543222 267899999999
Q ss_pred ecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccc
Q 014100 87 DDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 87 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (430)
+++ .+..+++.. +.++++|++|++++| .+..+ +...+..+++|+.|++.+++
T Consensus 86 s~N-~l~~i~~~~-f~~l~~L~~L~L~~N-~l~~~---------~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYN-RLRCIPPRT-FDGLKSLRLLSLHGN-DISVV---------PEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTT-TTTCTTCCEEECCSS-CCCBC---------CTTTTTTCTTCCEEECCSSC
T ss_pred CCC-ccCEeCHHH-hCCCCCCCEEECCCC-CCCee---------ChhhhhcCccccEEEeCCCC
Confidence 997 577765543 788999999999998 56665 55556889999999999864
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.2e-08 Score=81.50 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=74.5
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.+..+|..+ .++|++|+++++. +..+.... ...+++|++|+++++ .+..+++ ..+..+++|++|++++| .
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N-~ 87 (177)
T 2o6r_A 17 KGLTSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYLHEN-K 87 (177)
T ss_dssp SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-C
T ss_pred CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHH---hcCcccccEEECCCC-cceEeCh-hHccCCCccCEEECCCC-C
Confidence 4455566443 3678888888765 55332211 245778888888876 5565443 33567888888888877 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ +...+..+++|++|+++++ .++.++... ...+++|++|++.+++
T Consensus 88 l~~~---------~~~~~~~l~~L~~L~l~~N-~l~~~~~~~--~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSL---------PNGVFDKLTQLKELALDTN-QLKSVPDGI--FDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSS-CCSCCCTTT--TTTCTTCCEEECCSSC
T ss_pred cccc---------CHHHhhCCcccCEEECcCC-cceEeCHHH--hcCCcccCEEEecCCC
Confidence 5544 4444467788888888775 455554431 3456777777776665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-07 Score=81.00 Aligned_cols=103 Identities=18% Similarity=0.164 Sum_probs=66.6
Q ss_pred ceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCC
Q 014100 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 133 (430)
++++++++. +..++.. -.++|++|+++++ .+..+++...+..+++|++|++++| .+..+ +..
T Consensus 11 ~~l~~s~~~-l~~ip~~------~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~---------~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRD------IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGI---------EPN 72 (192)
T ss_dssp TEEECTTSC-CSSCCSC------CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCB---------CTT
T ss_pred CEEEcCCCC-cCcCccC------CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCc---------CHh
Confidence 567777654 5544332 2448888888887 5666555444678888999999887 45444 233
Q ss_pred CcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 134 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+..+++|++|+++++ .++.++... +..+++|++|+++++.
T Consensus 73 ~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 73 AFEGASHIQELQLGEN-KIKEISNKM--FLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp TTTTCTTCCEEECCSC-CCCEECSSS--STTCTTCCEEECCSSC
T ss_pred HcCCcccCCEEECCCC-cCCccCHHH--hcCCCCCCEEECCCCc
Confidence 3477888888888875 455553321 4556777777777654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.59 E-value=6.6e-06 Score=79.57 Aligned_cols=224 Identities=12% Similarity=0.126 Sum_probs=110.2
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+......-.+|+.+.+.+. ++.+.... ..-.+|+.+.+.. ++..+... .+.+|++|+.+++.++ .
T Consensus 122 ~~i~~I~~~aF~~~~L~~i~l~~~--i~~I~~~a----F~~~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~n-~ 191 (401)
T 4fdw_A 122 NSVKSIPKDAFRNSQIAKVVLNEG--LKSIGDMA----FFNSTVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSKT-K 191 (401)
T ss_dssp TTCCEECTTTTTTCCCSEEECCTT--CCEECTTT----TTTCCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTTS-C
T ss_pred CccCEehHhhcccCCccEEEeCCC--ccEECHHh----cCCCCceEEEeCC--CccEehHH-HhhCcccCCeeecCCC-c
Confidence 334444444333346777776532 55443333 1113577777764 45554332 3667777777777654 4
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-----CCcceEEEe
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTT 192 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l 192 (430)
+..+ +...+. +.+|+.+.+.+ .++.+... ....+++|+.+.+.. .++.++ ..+|+.+.+
T Consensus 192 l~~I---------~~~aF~-~~~L~~l~lp~--~l~~I~~~--aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~l 255 (401)
T 4fdw_A 192 ITKL---------PASTFV-YAGIEEVLLPV--TLKEIGSQ--AFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKL 255 (401)
T ss_dssp CSEE---------CTTTTT-TCCCSEEECCT--TCCEECTT--TTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEE
T ss_pred ceEe---------chhhEe-ecccCEEEeCC--chheehhh--HhhCCCCCCEEecCC--CccCccccccccCCccEEEe
Confidence 5555 344333 45666666653 24444222 134556666666643 233333 234555555
Q ss_pred cCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCC----CceeecccCchhhhhcccccEEeeccCccccccc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH----KVQHLWKENDESNKAFANLIRLKISECSKLQKLV 268 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~----~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 268 (430)
.++ +..+.. .....+++|+.+.+.+.. .+..+....+ ..|++|+.+.+.+ .+..+.
T Consensus 256 p~~-i~~I~~--------------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF---~~c~~L~~l~l~~--~i~~I~ 315 (401)
T 4fdw_A 256 PNG-VTNIAS--------------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL---EGCPKLARFEIPE--SIRILG 315 (401)
T ss_dssp ETT-CCEECT--------------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTT---TTCTTCCEECCCT--TCCEEC
T ss_pred CCC-ccEECh--------------hHhhCCCCCCEEEeCCccccCCcccEECHHHh---hCCccCCeEEeCC--ceEEEh
Confidence 322 221110 112345666666665421 1123444545 6666666666653 344443
Q ss_pred C-CcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 269 T-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 269 ~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
. .+..+++|+.+.+.. .++.+.... +.++ +|+.+++.+.
T Consensus 316 ~~aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred hhhhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 2 233556666666643 344444332 3345 6666666553
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-09 Score=94.01 Aligned_cols=151 Identities=15% Similarity=0.143 Sum_probs=92.9
Q ss_pred CCCCCCcccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCC
Q 014100 1 MTRCPNMKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNN 80 (430)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 80 (430)
|++++.++.-.+.+...+++..+.+.+ ....|. .+.++.+|..+..+++|++|+++++. +..+. .. ..+++
T Consensus 1 m~~~~~~~~~~~~~~~~~~l~~l~l~~--~~l~~~-~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~----~~l~~ 71 (198)
T 1ds9_A 1 MAKATTIKDAIRIFEERKSVVATEAEK--VELHGM-IPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMEN 71 (198)
T ss_dssp CCCCSCHHHHHHHHHHTTCCCCTTCSE--EECCBC-CTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CH----HHHTT
T ss_pred CcchhHHHHHHHHHHhcccccCcchhe--eEeccc-cCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-cc----ccCCC
Confidence 455555544433333344444444322 111222 24566777778888899999998775 55433 22 56788
Q ss_pred ccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcc
Q 014100 81 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 160 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 160 (430)
|++|++++| .+..++. .+..+++|++|++++| .+..+ | . +..+++|+.|+++++ .+..++.. .
T Consensus 72 L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N-~l~~l---------~-~-~~~l~~L~~L~l~~N-~i~~~~~~-~ 134 (198)
T 1ds9_A 72 LRILSLGRN-LIKKIEN--LDAVADTLEELWISYN-QIASL---------S-G-IEKLVNLRVLYMSNN-KITNWGEI-D 134 (198)
T ss_dssp CCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEE-ECCCH---------H-H-HHHHHHSSEEEESEE-ECCCHHHH-H
T ss_pred CCEEECCCC-Ccccccc--hhhcCCcCCEEECcCC-cCCcC---------C-c-cccCCCCCEEECCCC-cCCchhHH-H
Confidence 999999887 4565443 2666788999999888 45444 2 2 367788888888875 34443321 1
Q ss_pred cccCCCCccEEEEecCC
Q 014100 161 NIIEMPELRYLAIENCP 177 (430)
Q Consensus 161 ~~~~l~~L~~L~l~~c~ 177 (430)
.+..+++|++|++.+|+
T Consensus 135 ~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 135 KLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHTTTTTCSEEEECSCH
T ss_pred HHhcCCCCCEEEecCCc
Confidence 15667888888887765
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.8e-06 Score=81.26 Aligned_cols=256 Identities=10% Similarity=0.051 Sum_probs=167.9
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+..++.+.+.+ .++.+.... . .. .+|+.+.+.. ++..+.... +.++ +|+.+.+.+ .+..+
T Consensus 111 ~~~~l~~i~ip~--~i~~I~~~a-F--~~-~~L~~i~l~~--~i~~I~~~a-F~~~-~L~~i~lp~--~l~~I------- 171 (401)
T 4fdw_A 111 ILKGYNEIILPN--SVKSIPKDA-F--RN-SQIAKVVLNE--GLKSIGDMA-FFNS-TVQEIVFPS--TLEQL------- 171 (401)
T ss_dssp ECSSCSEEECCT--TCCEECTTT-T--TT-CCCSEEECCT--TCCEECTTT-TTTC-CCCEEECCT--TCCEE-------
T ss_pred ecCCccEEEECC--ccCEehHhh-c--cc-CCccEEEeCC--CccEECHHh-cCCC-CceEEEeCC--CccEe-------
Confidence 347788888774 366555444 1 22 4799999876 567655443 5554 799999985 67777
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCcccC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~ 202 (430)
+...+..+++|+.+++.++ .+..++.. ...+.+|+.+.+.. .++.++ +.+|+.+.+.++ +..+.
T Consensus 172 --~~~aF~~c~~L~~l~l~~n-~l~~I~~~---aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~- 241 (401)
T 4fdw_A 172 --KEDIFYYCYNLKKADLSKT-KITKLPAS---TFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIG- 241 (401)
T ss_dssp --CSSTTTTCTTCCEEECTTS-CCSEECTT---TTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEEC-
T ss_pred --hHHHhhCcccCCeeecCCC-cceEechh---hEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCcc-
Confidence 5666789999999999863 56777655 33368999999964 355555 567888888764 22222
Q ss_pred CCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccc----cccc-CCcccCCCC
Q 014100 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKL----QKLV-TPSWHLENL 277 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l----~~l~-~~~~~l~~L 277 (430)
...|. -.+|+.+.+. ++++.+....+ ..+++|+.+.+.+.... ..++ ..+..+++|
T Consensus 242 ----------~~aF~----~~~L~~i~lp--~~i~~I~~~aF---~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L 302 (401)
T 4fdw_A 242 ----------QEAFR----ESGITTVKLP--NGVTNIASRAF---YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL 302 (401)
T ss_dssp ----------TTTTT----TCCCSEEEEE--TTCCEECTTTT---TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC
T ss_pred ----------ccccc----cCCccEEEeC--CCccEEChhHh---hCCCCCCEEEeCCccccCCcccEECHHHhhCCccC
Confidence 11122 2689999995 47888888877 89999999999874321 1343 345578899
Q ss_pred CEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccC
Q 014100 278 ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALE 357 (430)
Q Consensus 278 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 357 (430)
+.+.+.. .++.+... .+.+|.+|+.+++.. .++.+-. . ....+ +|+.+.+.+. .+..+..+. +..
T Consensus 303 ~~l~l~~--~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~---~----aF~~~-~L~~l~l~~n-~~~~l~~~~-F~~ 367 (401)
T 4fdw_A 303 ARFEIPE--SIRILGQG-LLGGNRKVTQLTIPA--NVTQINF---S----AFNNT-GIKEVKVEGT-TPPQVFEKV-WYG 367 (401)
T ss_dssp CEECCCT--TCCEECTT-TTTTCCSCCEEEECT--TCCEECT---T----SSSSS-CCCEEEECCS-SCCBCCCSS-CCC
T ss_pred CeEEeCC--ceEEEhhh-hhcCCCCccEEEECc--cccEEcH---H----hCCCC-CCCEEEEcCC-CCccccccc-ccC
Confidence 9999973 57777654 356789999999954 2443321 0 11225 8999999875 444544322 222
Q ss_pred CC-CccEEEec
Q 014100 358 FP-SLEHVVVR 367 (430)
Q Consensus 358 ~~-~L~~L~l~ 367 (430)
++ .++.|.+.
T Consensus 368 ~~~~l~~l~vp 378 (401)
T 4fdw_A 368 FPDDITVIRVP 378 (401)
T ss_dssp SCTTCCEEEEC
T ss_pred CCCCccEEEeC
Confidence 43 45666653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.8e-08 Score=100.46 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=83.0
Q ss_pred ccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccce-eeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 15 VSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 15 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
.+.+.++++++ ..+.+...+..+....+|..+.+....... .+.... .....+++|+.|+++++ .+.
T Consensus 170 ~s~~~~~~l~L----------~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~-~~~~~l~~L~~L~Ls~n-~l~ 237 (727)
T 4b8c_D 170 VSTPLTPKIEL----------FANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPK-DSKYDDQLWHALDLSNL-QIF 237 (727)
T ss_dssp ---------------------------------------------------------------CCCCCCEEECTTS-CCS
T ss_pred ecCCccceEEe----------eCCCCCcchhhHhhcCccCcccccCccccccceecCh-hhhccCCCCcEEECCCC-CCC
Confidence 33456677776 334555566566566666666655432111 001000 11256789999999997 466
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAI 173 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 173 (430)
.+++. +.++++|++|++++| .+..+ |..+ ..+++|+.|+|+++ .++.+|.. +..+++|++|++
T Consensus 238 ~l~~~--~~~l~~L~~L~Ls~N-~l~~l---------p~~~-~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~L 300 (727)
T 4b8c_D 238 NISAN--IFKYDFLTRLYLNGN-SLTEL---------PAEI-KNLSNLRVLDLSHN-RLTSLPAE---LGSCFQLKYFYF 300 (727)
T ss_dssp CCCGG--GGGCCSCSCCBCTTS-CCSCC---------CGGG-GGGTTCCEEECTTS-CCSSCCSS---GGGGTTCSEEEC
T ss_pred CCChh--hcCCCCCCEEEeeCC-cCccc---------Chhh-hCCCCCCEEeCcCC-cCCccChh---hcCCCCCCEEEC
Confidence 54443 448999999999998 55555 5554 88999999999986 46677665 788999999999
Q ss_pred ecCCCccccc-----CCcceEEEecCCCCCccc
Q 014100 174 ENCPDMETFI-----SNSVVHVTTDNKEPEKLT 201 (430)
Q Consensus 174 ~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~ 201 (430)
++|. ++.+| .++|+.|++++|.+.+..
T Consensus 301 ~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~ 332 (727)
T 4b8c_D 301 FDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQF 332 (727)
T ss_dssp CSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred CCCC-CCccChhhhcCCCccEEeCCCCccCCCC
Confidence 9885 56666 458899999999876543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-06 Score=74.64 Aligned_cols=86 Identities=24% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCC-cccCCCCCEEEEccCCCccccccccccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
+.+++|++|+++++ .++.+++..+ ..+++|+.|+++++ .++.+++. +..+++|+.|+++++ .++.++.. .+.
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~ 121 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVF---DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFD 121 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTT
T ss_pred cCcccccEEECCCC-cceEeChhHc---cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-Hhc
Confidence 45667777777763 5666554444 56677777777765 34444433 456677777777665 34544432 234
Q ss_pred cccCccEEEEcccc
Q 014100 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+++|++|++++++
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 56677777776653
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-07 Score=80.38 Aligned_cols=65 Identities=9% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhh----cCCCCEEEEecCCCccE
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRC----LNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~ 120 (430)
.+|++|++++|. +++. +. .....+++|++|++++|..+++..-.. +.. +++|++|+|++|..+++
T Consensus 61 ~~L~~LDLs~~~-Itd~--GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI--GF-DHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGG--GG-GGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHH--HH-HHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCH
Confidence 346666666555 4421 11 111345555555555555444322111 222 23455555555554433
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=74.27 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=14.8
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
++|++|+++++ .+..+++.. +.++++|++|++++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCC
Confidence 44444444443 333332221 334444555555444
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.5e-09 Score=91.57 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=96.4
Q ss_pred CCCcccccCCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccE
Q 014100 4 CPNMKTFSQGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRH 83 (430)
Q Consensus 4 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~ 83 (430)
.|.++.++..+..+++|+++.+ .++.+..+| .+..+++|++|+++++. +..++... ..+++|++
T Consensus 34 ~~~l~~l~~~~~~l~~L~~L~l----------s~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~----~~~~~L~~ 97 (198)
T 1ds9_A 34 IPPIEKMDATLSTLKACKHLAL----------STNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLD----AVADTLEE 97 (198)
T ss_dssp CTTCCCCHHHHHHTTTCSEEEC----------SEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHH----HHHHHCSE
T ss_pred cCcHhhhhHHHhcCCCCCEEEC----------CCCCCcccc-ccccCCCCCEEECCCCC-cccccchh----hcCCcCCE
Confidence 3556666777888999999998 345555666 77788999999999886 55433222 45689999
Q ss_pred EEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC-----
Q 014100 84 LVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF----- 158 (430)
Q Consensus 84 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~----- 158 (430)
|++++| .+..+ + .+.++++|++|++++| .+..+.. ......+++|++|++.+++-....+..
T Consensus 98 L~L~~N-~l~~l-~--~~~~l~~L~~L~l~~N-~i~~~~~--------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 98 LWISYN-QIASL-S--GIEKLVNLRVLYMSNN-KITNWGE--------IDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp EEEEEE-ECCCH-H--HHHHHHHSSEEEESEE-ECCCHHH--------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred EECcCC-cCCcC-C--ccccCCCCCEEECCCC-cCCchhH--------HHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 999998 56653 3 2778999999999998 4444311 011367899999999987533222110
Q ss_pred --cccccCCCCccEEE
Q 014100 159 --TENIIEMPELRYLA 172 (430)
Q Consensus 159 --~~~~~~l~~L~~L~ 172 (430)
...+..+++|+.|+
T Consensus 165 ~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHHCSSCSEEC
T ss_pred HHHHHHHhCCCcEEEC
Confidence 01145678888886
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.5e-06 Score=73.72 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=15.6
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
.+++|++|+++++ .+..+++ ..+.++++|++|++++|
T Consensus 55 ~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 55 HLVNLQQLYFNSN-KLTAIPT-GVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCcCCCEEECCCC-CCCccCh-hHhCCcchhhEEECCCC
Confidence 3444444444444 3333222 12334444444444444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.31 E-value=8.4e-07 Score=75.02 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=73.1
Q ss_pred cchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 36 LNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 36 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
.++.++.+|..+ .++|++|+++++. +..+... ....+++|++|+++++ .+..+++ ..+.++++|++|++++|
T Consensus 17 s~n~l~~ip~~~--~~~l~~L~L~~N~-i~~~~~~---~~~~l~~L~~L~Ls~N-~l~~l~~-~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 17 SGKSLASVPTGI--PTTTQVLYLYDNQ-ITKLEPG---VFDRLTQLTRLDLDNN-QLTVLPA-GVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTSCCSSCCSCC--CTTCSEEECCSSC-CCCCCTT---TTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCcCccCccC--CCCCcEEEcCCCc-CCccChh---hhcCcccCCEEECCCC-CcCccCh-hhccCCCCCCEEECCCC
Confidence 335677788766 4899999999876 6654222 1267899999999997 5776554 44678999999999998
Q ss_pred CCccEeeccccccCCcCCCcccccccceeeccccc
Q 014100 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (430)
.+..+ +...+..+++|+.|++++++
T Consensus 89 -~l~~~---------~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 -QLKSI---------PRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp -CCCCC---------CTTTTTTCTTCCEEECCSSC
T ss_pred -ccCEe---------CHHHhcCCCCCCEEEeCCCC
Confidence 66666 55555788999999998864
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-06 Score=74.40 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=77.0
Q ss_pred ceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCC
Q 014100 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 133 (430)
+.++++++. +..++.+ -.++|++|+++++ .+..+++.. +.++++|++|++++| .+..+ |..
T Consensus 15 ~~l~~~~n~-l~~iP~~------~~~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~i---------~~~ 75 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAG------IPTDKQRLWLNNN-QITKLEPGV-FDHLVNLQQLYFNSN-KLTAI---------PTG 75 (174)
T ss_dssp SEEECCSSC-CSSCCSC------CCTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCC---------CTT
T ss_pred cEEEeCCCC-CCccCCC------cCCCCcEEEeCCC-CccccCHHH-hcCCcCCCEEECCCC-CCCcc---------Chh
Confidence 567777654 5544432 2488999999987 566655543 778999999999998 67666 666
Q ss_pred CcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 134 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
++..+++|+.|+++++ .++.++... +..+++|+.|++.+++
T Consensus 76 ~~~~l~~L~~L~L~~N-~l~~l~~~~--~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 76 VFDKLTQLTQLDLNDN-HLKSIPRGA--FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTT--TTTCTTCSEEECCSSC
T ss_pred HhCCcchhhEEECCCC-ccceeCHHH--hccccCCCEEEeCCCC
Confidence 6688999999999985 566665432 5679999999999886
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.28 E-value=5.5e-07 Score=75.89 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=16.6
Q ss_pred ccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCc
Q 014100 334 ELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 334 ~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
+|++|++++|+++++-... ....+++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCC
Confidence 3444444444444442221 11124455555555554444
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00013 Score=70.19 Aligned_cols=284 Identities=12% Similarity=0.050 Sum_probs=134.3
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEe-------
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV------- 121 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~------- 121 (430)
.+.+|+.+.+.. .++.+.... ...+.+|+.+++.. ++..+.. ..+.++.+|+.+.+... +..+
T Consensus 69 ~c~~L~~i~lp~--~i~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~-~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 69 GCRKVTEIKIPS--TVREIGEFA---FENCSKLEIINIPD--SVKMIGR-CTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TCTTEEEEECCT--TCCEECTTT---TTTCTTCCEECCCT--TCCEECT-TTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred CCCCceEEEeCC--CccCcchhH---hhCCCCCcEEEeCC--CceEccc-hhhcccccchhhcccCc--eeeecceeeec
Confidence 567777777753 255443332 14567788887764 3444332 33666777776655421 2111
Q ss_pred ------eccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceE
Q 014100 122 ------LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVH 189 (430)
Q Consensus 122 ------~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~ 189 (430)
........+....+..+++|+.+.+.+ .+..+... ....+.+|+.+.+... ++.++ +..|+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~--~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHNG--LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLEN 212 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTT--TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCB
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCC--ccceeccc--cccCCCCceEEEcCCC--ceEeCchhhccccccce
Confidence 111122222344457778888888864 23333222 1445677777776432 33332 334444
Q ss_pred EEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccccc-
Q 014100 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV- 268 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~- 268 (430)
+.+.++... +. .......+|+.+.+.. .++.+....+ ..+..++.+.+... ...+.
T Consensus 213 i~~~~~~~~-i~---------------~~~~~~~~l~~i~ip~--~~~~i~~~~f---~~~~~l~~~~~~~~--~~~i~~ 269 (394)
T 4fs7_A 213 MEFPNSLYY-LG---------------DFALSKTGVKNIIIPD--SFTELGKSVF---YGCTDLESISIQNN--KLRIGG 269 (394)
T ss_dssp CCCCTTCCE-EC---------------TTTTTTCCCCEEEECT--TCCEECSSTT---TTCSSCCEEEECCT--TCEECS
T ss_pred eecCCCceE-ee---------------hhhcccCCCceEEECC--Cceecccccc---cccccceeEEcCCC--cceeec
Confidence 444332210 00 1112345677776643 4455554544 66667777766542 22222
Q ss_pred CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCce
Q 014100 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS 348 (430)
Q Consensus 269 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 348 (430)
.....+..++.+..... .++.. ....+.+|+.+.+.+ .++.+-.. ....+.+|+.+.+. .+++.
T Consensus 270 ~~F~~~~~l~~~~~~~~----~i~~~-~F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp--~~v~~ 333 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSV----IVPEK-TFYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLVSIDLP--YLVEE 333 (394)
T ss_dssp CTTTTCTTCCEEEECSS----EECTT-TTTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCCEECCC--TTCCE
T ss_pred cccccccccceeccCce----eeccc-ccccccccccccccc--ccceechh-------hhcCCCCCCEEEeC--CcccE
Confidence 12234455555544321 11111 234456666666532 12222100 01114556655553 23555
Q ss_pred ecCCCcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEec
Q 014100 349 FCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKP 390 (430)
Q Consensus 349 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l 390 (430)
+... .+..|.+|+.+.+.. .++.++.. +..+++|+.+.+
T Consensus 334 I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 334 IGKR-SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ECTT-TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred EhHH-hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 5432 223456666666643 24444433 345566666665
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.09 E-value=5.2e-06 Score=78.60 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.+..+|. +..+++|++|+|++++.+..+.... ...+++|+.|+|+++ .+..+++.. +.++++|++|+|++| .+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l 92 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKS-GLRFVAPDA-FHFTPRLSRLNLSFN-AL 92 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSS-CCCEECTTG-GGSCSCCCEEECCSS-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhH---hccccCCCEEECCCC-ccceeCHHH-hcCCcCCCEEeCCCC-cc
Confidence 5677888 8889999999998745577665332 257899999999987 677765543 778999999999988 56
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccc
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 150 (430)
..+ |..++..++ |+.|++.+++
T Consensus 93 ~~~---------~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESL---------SWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp SCC---------CSTTTCSCC-CCEEECCSSC
T ss_pred cee---------CHHHcccCC-ceEEEeeCCC
Confidence 655 455445555 8888887743
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.8e-06 Score=79.93 Aligned_cols=194 Identities=16% Similarity=0.188 Sum_probs=99.8
Q ss_pred ceeeeEeecccccccC-ccchhhhhhhhcccCCCCcceeecccccc--ceeeccCC---CCCCCCCCCccEEEeecCcCC
Q 014100 19 KLHEVQVKGELRRWEG-NLNSTIQKCYEEMIGFRDIKYLQLGHFPR--LQEIWHGQ---ALPVSFFNNLRHLVVDDCTNM 92 (430)
Q Consensus 19 ~L~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~L~~L~l~~~~~--l~~~~~~~---~~~~~~~~~L~~L~l~~c~~l 92 (430)
+++.+.+ ..|.+.| .....+..+...+..|++|+.|.+.+... ..-.|... ......+|+|+.|.+++|..+
T Consensus 108 ~v~~L~l--g~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 108 SLKQITI--GXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GCSEEEE--CCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred hcceEEE--cccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3444444 2344443 12134556666666777888887765321 00012111 000135678888888776322
Q ss_pred CcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccc-------ccccccCcccccCC
Q 014100 93 LSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPK-------LKRFCNFTENIIEM 165 (430)
Q Consensus 93 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------l~~~~~~~~~~~~l 165 (430)
.+++ + .+++|++|++..|. +..- ++..+ ....+|+|++|+|..... +..+... .....+
T Consensus 186 -~l~~---~-~~~~L~~L~L~~~~-l~~~----~l~~l---~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~ 251 (362)
T 2ra8_A 186 -SIGK---K-PRPNLKSLEIISGG-LPDS----VVEDI---LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRF 251 (362)
T ss_dssp -BCCS---C-BCTTCSEEEEECSB-CCHH----HHHHH---HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTC
T ss_pred -eecc---c-cCCCCcEEEEecCC-CChH----HHHHH---HHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCC
Confidence 2222 2 26788888887663 3211 00000 012567888887742111 1111111 002357
Q ss_pred CCccEEEEecCCCcccc-------c-CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCce
Q 014100 166 PELRYLAIENCPDMETF-------I-SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 166 ~~L~~L~l~~c~~l~~~-------~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 237 (430)
|+|+.|.+.+|...... + .++|+.|+++.|.+.... ...+...+..+++|+.|+++.| .++
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G----------~~~L~~~L~~l~~L~~L~L~~n-~i~ 320 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG----------ARLLLDHVDKIKHLKFINMKYN-YLS 320 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH----------HHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH----------HHHHHhhcccCCcceEEECCCC-cCC
Confidence 88888888877643211 1 457888888877655421 0011122345789999999876 677
Q ss_pred ee
Q 014100 238 HL 239 (430)
Q Consensus 238 ~~ 239 (430)
+.
T Consensus 321 d~ 322 (362)
T 2ra8_A 321 DE 322 (362)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.95 E-value=9.8e-06 Score=77.09 Aligned_cols=174 Identities=17% Similarity=0.189 Sum_probs=90.1
Q ss_pred CCCCCccEEEeecCcC----C---CcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccc
Q 014100 76 SFFNNLRHLVVDDCTN----M---LSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~----l---~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (430)
..+++|+.|.+.+... + .......++..+|+|+.|.+++|..+. + +. + ..++|++|++..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l---------~~-~--~~~~L~~L~L~~ 202 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I---------GK-K--PRPNLKSLEIIS 202 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C---------CS-C--BCTTCSEEEEEC
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e---------cc-c--cCCCCcEEEEec
Confidence 3577888887754210 0 000112346677888888888763321 1 11 1 267788888765
Q ss_pred cccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEE
Q 014100 149 LPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 149 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
+. +............+|+|+.|+++.+..... . +..+.. ....+. .+.+|+|+.|
T Consensus 203 ~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~----------~~~~~~------------l~~~l~-~~~~p~Lr~L 257 (362)
T 2ra8_A 203 GG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYG-F----------DGDMNV------------FRPLFS-KDRFPNLKWL 257 (362)
T ss_dssp SB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGT-C----------CSCGGG------------TGGGSC-TTTCTTCCEE
T ss_pred CC-CChHHHHHHHHccCCCCcEEEEeccccccc-c----------chhHHH------------HHHHHh-cCCCCCcCEE
Confidence 43 222111100012577777777753211000 0 000000 000111 2457899999
Q ss_pred ecccCCCceeecccCchhhhhcccccEEeeccCccccc-----ccCCcccCCCCCEEEEccCCCccc
Q 014100 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLIN 290 (430)
Q Consensus 229 ~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~ 290 (430)
.+.+| .+.......+.....+++|++|+++.+ .++. ++..+..+++|+.|+++.|. +.+
T Consensus 258 ~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d 321 (362)
T 2ra8_A 258 GIVDA-EEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSD 321 (362)
T ss_dssp EEESC-TTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCH
T ss_pred eCCCC-CCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCH
Confidence 99886 333221111111135789999999765 4443 44455678999999998774 443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=73.98 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=65.0
Q ss_pred eeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCC
Q 014100 55 YLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHI 134 (430)
Q Consensus 55 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 134 (430)
.++.++.+++..++. . ..+.+|+.|+|+++..+..+++.. +.++++|++|++++| .+..+ +...
T Consensus 12 ~v~~~~~n~l~~ip~-l----~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~---------~~~~ 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-L----PGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFV---------APDA 75 (347)
T ss_dssp CEECCSSCCCTTTTT-S----CSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEE---------CTTG
T ss_pred EEEcCCCCCCCccCC-C----CCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCC-cccee---------CHHH
Confidence 345555433554443 3 567788888887633666655433 677888888888887 57666 4444
Q ss_pred cccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 135 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 135 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+++|+.|+|+++ .+..++.. ......|+.|++.+++
T Consensus 76 ~~~l~~L~~L~l~~N-~l~~~~~~---~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 76 FHFTPRLSRLNLSFN-ALESLSWK---TVQGLSLQELVLSGNP 114 (347)
T ss_dssp GGSCSCCCEEECCSS-CCSCCCST---TTCSCCCCEEECCSSC
T ss_pred hcCCcCCCEEeCCCC-ccceeCHH---HcccCCceEEEeeCCC
Confidence 577888888888874 56666543 2222237777776654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00081 Score=64.64 Aligned_cols=59 Identities=7% Similarity=-0.043 Sum_probs=41.9
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 148 (430)
..+.+|+.+.+.. ++..+.. ..+.+|.+|+.+++.+ .++.+ +...+..+++|+.+.+..
T Consensus 68 ~~c~~L~~i~lp~--~i~~I~~-~aF~~c~~L~~i~lp~--~l~~I---------~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREIGE-FAFENCSKLEIINIPD--SVKMI---------GRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTCTTEEEEECCT--TCCEECT-TTTTTCTTCCEECCCT--TCCEE---------CTTTTTTCTTCCCCCCCT
T ss_pred hCCCCceEEEeCC--CccCcch-hHhhCCCCCcEEEeCC--CceEc---------cchhhcccccchhhcccC
Confidence 4567899999874 5666544 4488899999999975 36666 455567777887776653
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=3.8e-07 Score=87.44 Aligned_cols=42 Identities=12% Similarity=-0.071 Sum_probs=25.4
Q ss_pred CCCCCCcEEecccCCCceeecccCch-hhhhcccccEEeeccCc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECS 262 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~ 262 (430)
...++|+.|++++| .+++.....+. .....++|++|++++|.
T Consensus 208 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 208 DRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp GGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 34567888888775 66654433221 11455778888888764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.75 E-value=2.4e-06 Score=81.86 Aligned_cols=70 Identities=13% Similarity=-0.027 Sum_probs=43.2
Q ss_pred CCCCCCcEEecccCCCceeecccCch-hhhhcccccEEeeccCcccc----cccCCcccCCCCCEEEEccCCCcccc
Q 014100 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINV 291 (430)
Q Consensus 220 ~~~~~L~~L~L~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~~c~~l~~~ 291 (430)
...++|++|+|+++ .+++.....+. .....++|+.|++++|..-. .+...+...++|++|++++|. +.+.
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 45678899998885 55543211110 11556789999999875322 233334456889999998874 5443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.011 Score=56.65 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=32.9
Q ss_pred CceeecccCchhhhhcccccEEeeccCccccccc-CCcccCCCCCEEEEccCCCccccccccccccccCccEEEEc
Q 014100 235 KVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 309 (430)
.++.+....+ ..+..|+.+.+... ...+. .....+++|+.+.+. ..++.++.. .+.+|.+|+.+++.
T Consensus 252 ~v~~i~~~aF---~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~-aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 252 GVARIETHAF---DSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPES-VFAGCISLKSIDIP 319 (394)
T ss_dssp TEEEECTTTT---TTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTT-TTTTCTTCCEEECC
T ss_pred cceEccccee---eecccccEEecccc--cceecCcccccccccccccCC--CcccccCce-eecCCCCcCEEEeC
Confidence 3445444444 56666666666431 22222 123345666666664 234444433 23456666666663
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.018 Score=55.12 Aligned_cols=104 Identities=11% Similarity=0.118 Sum_probs=59.5
Q ss_pred cCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCC
Q 014100 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 352 (430)
.+.+|+.+.+.. .+..+... ...++..|+.+.+.. .++.+... ....+.+|+.+.+-. +++.+...
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~-aF~~c~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~I~~~ 328 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTG-AFMNCPALQDIEFSS--RITELPES-------VFAGCISLKSIDIPE--GITQILDD 328 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTT-------TTTTCTTCCEEECCT--TCCEECTT
T ss_pred ecccccEEeccc--ccceecCc-ccccccccccccCCC--cccccCce-------eecCCCCcCEEEeCC--cccEehHh
Confidence 445566666543 22333222 234567777777642 22222100 112266788887753 57777653
Q ss_pred CcccCCCCccEEEeccCCCCccccCC-CcCCCCceEEecccC
Q 014100 353 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEE 393 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~l~l~~~ 393 (430)
.+..|.+|+.+.+-. .++.++.. +..+.+|+.+++.+.
T Consensus 329 -aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 329 -AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp -TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred -HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 234688999999953 45555543 457899999998654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.32 Score=45.87 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=61.2
Q ss_pred CCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccc
Q 014100 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l 300 (430)
+.+|+.+.+.. .++.+....+ ..+..|+.+.+.. .++.+.. ....+.+|+.+.+.. .++.++.. ...++
T Consensus 216 ~~~l~~i~~~~--~~~~i~~~~f---~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c 285 (379)
T 4h09_A 216 GKNLKKITITS--GVTTLGDGAF---YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGC 285 (379)
T ss_dssp CSSCSEEECCT--TCCEECTTTT---TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTC
T ss_pred ccccceeeecc--ceeEEccccc---cCCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccc-ccccc
Confidence 45566666543 4555554444 5666677766643 2333322 233456677766643 34444332 23556
Q ss_pred cCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEec
Q 014100 301 VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR 367 (430)
Q Consensus 301 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~ 367 (430)
.+|+.+.+.+. .++.+-.. ....+.+|+.+.+- .+++.+... .+..|++|+.+.+.
T Consensus 286 ~~L~~i~l~~~-~i~~I~~~-------aF~~c~~L~~i~lp--~~l~~I~~~-aF~~C~~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNS-AIETLEPR-------VFMDCVKLSSVTLP--TALKTIQVY-AFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEEECCT-TCCEECTT-------TTTTCTTCCEEECC--TTCCEECTT-TTTTCTTCCCCCCC
T ss_pred ccccccccccc-ccceehhh-------hhcCCCCCCEEEcC--ccccEEHHH-HhhCCCCCCEEEEC
Confidence 77777766432 22222100 11114566666653 235555442 22345666666653
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0011 Score=56.52 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=68.0
Q ss_pred hhhcccCCCCcceeecccccccee-----eccCCCCCCCCCCCccEEEeecCcCCCcCCc---hhHHhhcCCCCEEEEec
Q 014100 43 CYEEMIGFRDIKYLQLGHFPRLQE-----IWHGQALPVSFFNNLRHLVVDDCTNMLSAIP---ANLIRCLNNLRWLEVRN 114 (430)
Q Consensus 43 l~~~l~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~ 114 (430)
+...+...++|++|+++++..+.+ +.... ...++|++|++++| .+..... ...+...++|++|++++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L----~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL----KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH----TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH----HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 444466788999999998833552 11111 34678999999987 3443221 11245668899999998
Q ss_pred CCCccEeeccccccCCcCCCcccccccceeec--cccccccccccC--cccccCCCCccEEEEecCC
Q 014100 115 CDSLEEVLHLEELNADKEHIGPLFPKLFELTL--MDLPKLKRFCNF--TENIIEMPELRYLAIENCP 177 (430)
Q Consensus 115 c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l--~~~~~l~~~~~~--~~~~~~l~~L~~L~l~~c~ 177 (430)
| .+... |...+...+ ...+.|++|++ .++ .+++.... ...+...++|++|++++|.
T Consensus 103 N-~i~~~----g~~~l~~~L-~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 N-FISGS----GILALVEAL-QSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp S-CCCHH----HHHHHHHGG-GGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred C-cCCHH----HHHHHHHHH-HhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 8 44332 111111122 44567888888 443 33332100 0003344667777766654
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.24 Score=46.76 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=77.2
Q ss_pred ccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCcccCCCcceec
Q 014100 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
..+.+|+.+.+.. .+..+... ....+..|+.+.+... ++.++ +.+++.+.+.+. +..+.
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~~--~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~-------- 278 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGDG--AFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVP-------- 278 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECTT--TTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEEC--------
T ss_pred ccccccceeeecc--ceeEEccc--cccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecc--------
Confidence 3445566666543 23333211 1456778888888542 44443 456777777543 22111
Q ss_pred cCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCc
Q 014100 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l 288 (430)
......+++|+.+.+.+ +.++.+....+ ..|.+|+.+.+.. .++.+.. .+.++.+|+.+.+.. .+
T Consensus 279 ------~~aF~~c~~L~~i~l~~-~~i~~I~~~aF---~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~--~v 344 (379)
T 4h09_A 279 ------YLLCSGCSNLTKVVMDN-SAIETLEPRVF---MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK--SI 344 (379)
T ss_dssp ------TTTTTTCTTCCEEEECC-TTCCEECTTTT---TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT--TC
T ss_pred ------ccccccccccccccccc-cccceehhhhh---cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC--cc
Confidence 01234578999999976 46888877777 8899999999964 3555543 345677888877743 34
Q ss_pred cccc
Q 014100 289 INVL 292 (430)
Q Consensus 289 ~~~~ 292 (430)
+.+.
T Consensus 345 ~~I~ 348 (379)
T 4h09_A 345 TLIE 348 (379)
T ss_dssp CEEC
T ss_pred CEEc
Confidence 4443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0076 Score=54.30 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=21.5
Q ss_pred CCCCccEEEeecCcCCCcCCch-hHHhhcCCCCEEEEecC
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPA-NLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~c 115 (430)
.+++|+.|+|+++ .+..+.+. ..+..+++|+.|++++|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 3566666666665 34443221 23456667777777666
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0034 Score=56.65 Aligned_cols=66 Identities=18% Similarity=0.072 Sum_probs=44.6
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+++|+.|+|+++. +..+.... .....+++|+.|+|+++ .+.+......+..+ +|++|++++|+-
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~-~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGT-THHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCC-CCCCccch-hHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcC
Confidence 468999999999886 65432111 01136999999999987 55554232223334 899999999864
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0036 Score=53.17 Aligned_cols=60 Identities=17% Similarity=0.050 Sum_probs=28.6
Q ss_pred ccccEEeeccCcccc----cccCCcccCCCCCEEEE--ccCCCccccccc---cccccccCccEEEEccc
Q 014100 251 ANLIRLKISECSKLQ----KLVTPSWHLENLATLEV--SKCHGLINVLTL---STSESLVNLGRMKIADC 311 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l--~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c 311 (430)
++|++|++++|..-. .+...+...++|++|++ +++ .+.+-... ..+...+.|++|++++|
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 455555555543211 12233444556777777 333 34332111 12233467777777665
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=1.5 Score=34.24 Aligned_cols=35 Identities=14% Similarity=0.023 Sum_probs=20.0
Q ss_pred CCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 223 ~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
++|+.|+|++ +.++.++...+ ..+++|+.|+|.+.
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLL---DALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTG---GGCTTCCEEECCSS
T ss_pred cCCCEEECCC-CcCCccChhhh---hhccccCEEEecCC
Confidence 4566666666 45666555544 55555555555543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.68 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.6 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.59 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.58 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.55 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.49 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.48 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.48 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.45 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.41 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.41 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.36 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.34 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.32 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.28 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.27 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.27 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.25 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.24 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.84 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.81 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.69 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.69 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.56 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.54 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.5 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.34 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.28 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.26 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.22 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.21 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.09 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 96.15 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 96.06 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.3 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.06 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 92.43 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 91.25 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 89.95 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=1.6e-16 Score=151.40 Aligned_cols=297 Identities=13% Similarity=0.177 Sum_probs=162.1
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
+.++.+ +++..+++|++|+++++. +++++. ...+++|++|++++| .+..+.+ +.++++|+.|+++++ .
T Consensus 54 ~~I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~~-----l~~L~~L~~L~L~~n-~i~~i~~---l~~l~~L~~L~~~~~-~ 121 (384)
T d2omza2 54 LGIKSI-DGVEYLNNLTQINFSNNQ-LTDITP-----LKNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-Q 121 (384)
T ss_dssp SCCCCC-TTGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-C
T ss_pred CCCCCc-cccccCCCCCEEeCcCCc-CCCCcc-----ccCCccccccccccc-ccccccc---ccccccccccccccc-c
Confidence 334444 456677788888888764 665431 256778888888777 3444333 557778888887765 3
Q ss_pred ccEeecccccc-------------CCcCCCcccccccceeeccccccccc---------------cccCcccccCCCCcc
Q 014100 118 LEEVLHLEELN-------------ADKEHIGPLFPKLFELTLMDLPKLKR---------------FCNFTENIIEMPELR 169 (430)
Q Consensus 118 l~~~~~~~~~~-------------~~~~~~~~~l~~L~~L~l~~~~~l~~---------------~~~~~~~~~~l~~L~ 169 (430)
+..+....... .................... ..+.. ..........+++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (384)
T d2omza2 122 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLE 200 (384)
T ss_dssp CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-chhhhhccccccccccccccccccccccccccccc
Confidence 33221111000 00000000000000000000 00000 000001134456677
Q ss_pred EEEEecCCCccccc----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCch
Q 014100 170 YLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDE 245 (430)
Q Consensus 170 ~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~ 245 (430)
.+.+.++. ++.++ .++|++|++++|.+.... ....+++|+.|++.++ .++.+.+ +
T Consensus 201 ~l~l~~n~-i~~~~~~~~~~~L~~L~l~~n~l~~~~----------------~l~~l~~L~~L~l~~n-~l~~~~~--~- 259 (384)
T d2omza2 201 SLIATNNQ-ISDITPLGILTNLDELSLNGNQLKDIG----------------TLASLTNLTDLDLANN-QISNLAP--L- 259 (384)
T ss_dssp EEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCG----------------GGGGCTTCSEEECCSS-CCCCCGG--G-
T ss_pred eeeccCCc-cCCCCcccccCCCCEEECCCCCCCCcc----------------hhhcccccchhccccC-ccCCCCc--c-
Confidence 77776654 23222 456777777777655432 2445677888887775 4555432 2
Q ss_pred hhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhccccccc
Q 014100 246 SNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEE 325 (430)
Q Consensus 246 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 325 (430)
..+++|+.|+++++. +..++ .+..++.++.+.+..+. +..+. ....+++++.|+++++ .++++.
T Consensus 260 --~~~~~L~~L~l~~~~-l~~~~-~~~~~~~l~~l~~~~n~-l~~~~---~~~~~~~l~~L~ls~n-~l~~l~------- 323 (384)
T d2omza2 260 --SGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELNENQ-LEDIS---PISNLKNLTYLTLYFN-NISDIS------- 323 (384)
T ss_dssp --TTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CSCCG---GGGGCTTCSEEECCSS-CCSCCG-------
T ss_pred --cccccCCEeeccCcc-cCCCC-ccccccccccccccccc-ccccc---ccchhcccCeEECCCC-CCCCCc-------
Confidence 666778888877653 34443 24566777777776653 33333 2456778888888775 444442
Q ss_pred CCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEeccc
Q 014100 326 AKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE 392 (430)
Q Consensus 326 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~ 392 (430)
....+++|++|++.+| .+++++. ...+++|++|++++| +++.++. +..+++|+.+++++
T Consensus 324 --~l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~ 382 (384)
T d2omza2 324 --PVSSLTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLND 382 (384)
T ss_dssp --GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCC
T ss_pred --ccccCCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCC
Confidence 1233788888888887 5666642 334788888888766 5666553 55678888888854
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.68 E-value=1.8e-15 Score=143.97 Aligned_cols=287 Identities=14% Similarity=0.228 Sum_probs=194.6
Q ss_pred CCcccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcC
Q 014100 12 QGIVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTN 91 (430)
Q Consensus 12 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~ 91 (430)
.|+..+++|++|.+ .++.++.++ .+..+++|++|+++++. +..+. +...+++|+.|+++++ .
T Consensus 60 ~gl~~L~nL~~L~L----------s~N~l~~l~-~l~~L~~L~~L~L~~n~-i~~i~-----~l~~l~~L~~L~~~~~-~ 121 (384)
T d2omza2 60 DGVEYLNNLTQINF----------SNNQLTDIT-PLKNLTKLVDILMNNNQ-IADIT-----PLANLTNLTGLTLFNN-Q 121 (384)
T ss_dssp TTGGGCTTCCEEEC----------CSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSS-C
T ss_pred cccccCCCCCEEeC----------cCCcCCCCc-cccCCcccccccccccc-ccccc-----cccccccccccccccc-c
Confidence 46667888888888 345566665 37889999999999887 55432 2368999999999876 3
Q ss_pred CCcCCchhHHhhcCCCCEEEEecCCCccEeec---------------------c-----------ccccCCcCCCccccc
Q 014100 92 MLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH---------------------L-----------EELNADKEHIGPLFP 139 (430)
Q Consensus 92 l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---------------------~-----------~~~~~~~~~~~~~l~ 139 (430)
...... ......+.......+. +..... + .............++
T Consensus 122 ~~~~~~---~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (384)
T d2omza2 122 ITDIDP---LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197 (384)
T ss_dssp CCCCGG---GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred cccccc---cccccccccccccccc-ccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence 444322 2344556666554431 111000 0 000000011235677
Q ss_pred ccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc----CCcceEEEecCCCCCcccCCCcceeccCcccc
Q 014100 140 KLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPL 215 (430)
Q Consensus 140 ~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~ 215 (430)
+++.+.++++ .+..++. ...+++|++|++.++. ++.++ .++++.+++++|.+.+..
T Consensus 198 ~~~~l~l~~n-~i~~~~~----~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~-------------- 257 (384)
T d2omza2 198 NLESLIATNN-QISDITP----LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLA-------------- 257 (384)
T ss_dssp TCSEEECCSS-CCCCCGG----GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCG--------------
T ss_pred ccceeeccCC-ccCCCCc----ccccCCCCEEECCCCC-CCCcchhhcccccchhccccCccCCCC--------------
Confidence 8888888875 3444432 4567899999999885 55554 578999999999877654
Q ss_pred CCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCcccccccc
Q 014100 216 FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLS 295 (430)
Q Consensus 216 ~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 295 (430)
..+.+++|+.|+++++ .++.+.+ + ..++.++.+.+..+. ++.+ ..+..+++++.|+++++ .+.+++.
T Consensus 258 --~~~~~~~L~~L~l~~~-~l~~~~~--~---~~~~~l~~l~~~~n~-l~~~-~~~~~~~~l~~L~ls~n-~l~~l~~-- 324 (384)
T d2omza2 258 --PLSGLTKLTELKLGAN-QISNISP--L---AGLTALTNLELNENQ-LEDI-SPISNLKNLTYLTLYFN-NISDISP-- 324 (384)
T ss_dssp --GGTTCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSSC-CSCC-GGGGGCTTCSEEECCSS-CCSCCGG--
T ss_pred --cccccccCCEeeccCc-ccCCCCc--c---ccccccccccccccc-cccc-cccchhcccCeEECCCC-CCCCCcc--
Confidence 2567889999999875 5555432 2 677889999998764 4444 34668899999999887 4666643
Q ss_pred ccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEecc
Q 014100 296 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
+..+++|++|++++| .++++. ....+++|+.|+++++ .++++.. ...+++|++|++++
T Consensus 325 -l~~l~~L~~L~L~~n-~l~~l~---------~l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~ 382 (384)
T d2omza2 325 -VSSLTKLQRLFFANN-KVSDVS---------SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLND 382 (384)
T ss_dssp -GGGCTTCCEEECCSS-CCCCCG---------GGGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCC
T ss_pred -cccCCCCCEEECCCC-CCCCCh---------hHcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCC
Confidence 577999999999998 555542 1233889999999876 6777653 34589999999975
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.60 E-value=3e-14 Score=131.26 Aligned_cols=256 Identities=16% Similarity=0.138 Sum_probs=166.2
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..++.+|..+ .+++++|+++++. ++.++... ...+++|++|++++|. +..+.+.. +.++++|++|++++| .
T Consensus 20 ~~L~~lP~~l--~~~l~~L~Ls~N~-i~~l~~~~---f~~l~~L~~L~l~~n~-~~~i~~~~-f~~l~~L~~L~l~~n-~ 90 (305)
T d1xkua_ 20 LGLEKVPKDL--PPDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINNK-ISKISPGA-FAPLVKLERLYLSKN-Q 90 (305)
T ss_dssp SCCCSCCCSC--CTTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSS-C
T ss_pred CCCCccCCCC--CCCCCEEECcCCc-CCCcChhH---hhcccccccccccccc-ccccchhh-hhCCCccCEecccCC-c
Confidence 4567777765 3689999999875 77665432 2568899999999884 55554433 778999999999998 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-------CCcceEE
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHV 190 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L 190 (430)
++.+ |.. ..+.++.|.+.++ .+..++... ......+..+.+..+....... .++|+.+
T Consensus 91 l~~l---------~~~---~~~~l~~L~~~~n-~l~~l~~~~--~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l 155 (305)
T d1xkua_ 91 LKEL---------PEK---MPKTLQELRVHEN-EITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155 (305)
T ss_dssp CSBC---------CSS---CCTTCCEEECCSS-CCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred cCcC---------ccc---hhhhhhhhhcccc-chhhhhhhh--hhccccccccccccccccccCCCccccccccccCcc
Confidence 6655 332 3456777777653 333332211 2345566666665544222111 3567888
Q ss_pred EecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccc-cC
Q 014100 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKL-VT 269 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~ 269 (430)
++++|.+..+. ...+++|+.|++.++ ......+..+ ..++.++.|.++++ .+..+ +.
T Consensus 156 ~l~~n~l~~l~-----------------~~~~~~L~~L~l~~n-~~~~~~~~~~---~~~~~l~~L~~s~n-~l~~~~~~ 213 (305)
T d1xkua_ 156 RIADTNITTIP-----------------QGLPPSLTELHLDGN-KITKVDAASL---KGLNNLAKLGLSFN-SISAVDNG 213 (305)
T ss_dssp ECCSSCCCSCC-----------------SSCCTTCSEEECTTS-CCCEECTGGG---TTCTTCCEEECCSS-CCCEECTT
T ss_pred ccccCCccccC-----------------cccCCccCEEECCCC-cCCCCChhHh---hccccccccccccc-cccccccc
Confidence 88888765543 244678899998875 4455445555 77788889988886 44444 34
Q ss_pred CcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCC
Q 014100 270 PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 270 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
.+..+++|++|+++++ .++.++. .+..+++|++|+++++ +++.+....+.. .......++|+.|.+.+++
T Consensus 214 ~~~~l~~L~~L~L~~N-~L~~lp~--~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~-~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 214 SLANTPHLRELHLNNN-KLVKVPG--GLADHKYIQVVYLHNN-NISAIGSNDFCP-PGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCT--TTTTCSSCCEEECCSS-CCCCCCTTSSSC-SSCCTTSCCCSEEECCSSS
T ss_pred cccccccceeeecccc-ccccccc--ccccccCCCEEECCCC-ccCccChhhccC-cchhcccCCCCEEECCCCc
Confidence 5667888999999887 5777654 3567889999999885 566553111000 0112236778899998875
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.59 E-value=4.4e-14 Score=130.14 Aligned_cols=243 Identities=14% Similarity=0.099 Sum_probs=157.2
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.+++++|+++++ .+..+++.. +.++++|++|++++|. +..+ +...+..+++|+.|++.++ .++.++.
T Consensus 30 ~~~l~~L~Ls~N-~i~~l~~~~-f~~l~~L~~L~l~~n~-~~~i---------~~~~f~~l~~L~~L~l~~n-~l~~l~~ 96 (305)
T d1xkua_ 30 PPDTALLDLQNN-KITEIKDGD-FKNLKNLHTLILINNK-ISKI---------SPGAFAPLVKLERLYLSKN-QLKELPE 96 (305)
T ss_dssp CTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSSC-CCCB---------CTTTTTTCTTCCEEECCSS-CCSBCCS
T ss_pred CCCCCEEECcCC-cCCCcChhH-hhcccccccccccccc-cccc---------chhhhhCCCccCEecccCC-ccCcCcc
Confidence 467889999887 567665433 7788899999998884 4344 3333478888999998876 4666653
Q ss_pred CcccccCCCCccEEEEecCCCccccc------CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecc
Q 014100 158 FTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS 231 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~ 231 (430)
. ..+.++.|.+.++. +..++ ......+....+....... .......+++|+.+++.
T Consensus 97 ~-----~~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~------------~~~~~~~l~~L~~l~l~ 158 (305)
T d1xkua_ 97 K-----MPKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGI------------ENGAFQGMKKLSYIRIA 158 (305)
T ss_dssp S-----CCTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGB------------CTTGGGGCTTCCEEECC
T ss_pred c-----hhhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCC------------CccccccccccCccccc
Confidence 2 34677888877654 33333 3345556665554322110 01123456788888888
Q ss_pred cCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 232 RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
++ ++..++. ..+++|+.|++.++......+..+..++.++.|+++++ .+..++.. .+.++++|++|+++++
T Consensus 159 ~n-~l~~l~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~-~~~~l~~L~~L~L~~N 229 (305)
T d1xkua_ 159 DT-NITTIPQ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNG-SLANTPHLRELHLNNN 229 (305)
T ss_dssp SS-CCCSCCS------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTT-TGGGSTTCCEEECCSS
T ss_pred cC-CccccCc------ccCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccc-cccccccceeeecccc
Confidence 75 4555432 34578889998887666665566677788888888876 45655443 4567888999999887
Q ss_pred ccchhhhcccccccCCcceeecccceeecccCCCCceecCCC-----cccCCCCccEEEeccCC
Q 014100 312 KMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN-----YALEFPSLEHVVVRQCP 370 (430)
Q Consensus 312 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-----~~~~~~~L~~L~l~~c~ 370 (430)
.++.+. .....+++|+.|+++++ +++.++... .....++|+.|++.+++
T Consensus 230 -~L~~lp--------~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 230 -KLVKVP--------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp -CCSSCC--------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred -cccccc--------cccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 455442 12333788899999885 577664322 11235678888888765
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.58 E-value=9.1e-15 Score=135.35 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=70.4
Q ss_pred CCcceeeccccccce---eeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccc
Q 014100 51 RDIKYLQLGHFPRLQ---EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 127 (430)
.++++|+++++. +. .++... ..+++|++|++++|.++....|.. +.++++|++|++++| .+..+
T Consensus 50 ~~v~~L~L~~~~-l~g~~~lp~~l----~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N-~l~~~------ 116 (313)
T d1ogqa_ 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGA------ 116 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEE------
T ss_pred EEEEEEECCCCC-CCCCCCCChHH----hcCccccccccccccccccccccc-cccccccchhhhccc-ccccc------
Confidence 467888888764 32 233333 678888888888765665434444 677888888888887 44444
Q ss_pred cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCC
Q 014100 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 128 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~ 178 (430)
+...+..+++|+.+++..+.....+|.. +..++.|+.+++.++..
T Consensus 117 ---~~~~~~~~~~L~~l~l~~N~~~~~~p~~---l~~l~~L~~l~l~~n~l 161 (313)
T d1ogqa_ 117 ---IPDFLSQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNRI 161 (313)
T ss_dssp ---CCGGGGGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSCC
T ss_pred ---ccccccchhhhcccccccccccccCchh---hccCcccceeecccccc
Confidence 2333466777888888776555555444 66777777777776653
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.55 E-value=4.5e-15 Score=137.43 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=86.3
Q ss_pred hhhhcccCCCCcceeeccccccce-eeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccE
Q 014100 42 KCYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 42 ~l~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 120 (430)
.+|.++..+++|++|++++++++. .++... .++++|++|+++++ ++....+.. +..+.+|+++++++|.....
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i----~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~~~L~~l~l~~N~~~~~ 140 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSSEEESC
T ss_pred CCChHHhcCcccccccccccccccccccccc----ccccccchhhhccc-ccccccccc-ccchhhhccccccccccccc
Confidence 578899999999999999876665 444434 78999999999998 566655543 77899999999999865444
Q ss_pred eeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCc-cEEEEecC
Q 014100 121 VLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPEL-RYLAIENC 176 (430)
Q Consensus 121 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L-~~L~l~~c 176 (430)
+ |..+ ..+++|+.++++++.....+|.. ...+..+ +.+.+.++
T Consensus 141 ~---------p~~l-~~l~~L~~l~l~~n~l~~~ip~~---~~~l~~l~~~l~~~~n 184 (313)
T d1ogqa_ 141 L---------PPSI-SSLPNLVGITFDGNRISGAIPDS---YGSFSKLFTSMTISRN 184 (313)
T ss_dssp C---------CGGG-GGCTTCCEEECCSSCCEEECCGG---GGCCCTTCCEEECCSS
T ss_pred C---------chhh-ccCcccceeeccccccccccccc---cccccccccccccccc
Confidence 4 4454 78899999999987655555544 5556665 55666554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.4e-15 Score=138.89 Aligned_cols=191 Identities=16% Similarity=0.157 Sum_probs=119.3
Q ss_pred CCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccc
Q 014100 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 155 (430)
....+|++|++++| .+.......++.++++|++|++++|. +.+. . +.. ...+++|++|++++|..+++.
T Consensus 43 ~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~----~----~~~-l~~~~~L~~L~Ls~c~~itd~ 111 (284)
T d2astb2 43 FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDP----I----VNT-LAKNSNLVRLNLSGCSGFSEF 111 (284)
T ss_dssp CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB-CCHH----H----HHH-HTTCTTCSEEECTTCBSCCHH
T ss_pred ccCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccC-CCcH----H----HHH-HhcCCCCcCcccccccccccc
Confidence 35568999999987 34433334457889999999999984 3221 0 111 256789999999998877654
Q ss_pred ccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCC-
Q 014100 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH- 234 (430)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~- 234 (430)
..... ...+++|++|++++|..+++..... .....+++|+.|++++|.
T Consensus 112 ~l~~l-~~~~~~L~~L~ls~c~~~~~~~~~~------------------------------~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 112 ALQTL-LSSCSRLDELNLSWCFDFTEKHVQV------------------------------AVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp HHHHH-HHHCTTCCEEECCCCTTCCHHHHHH------------------------------HHHHSCTTCCEEECCSCGG
T ss_pred ccchh-hHHHHhccccccccccccccccchh------------------------------hhcccccccchhhhccccc
Confidence 21111 3468899999999887665321000 001224567777777653
Q ss_pred CceeecccCchhhhhcccccEEeeccCcccc-cccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 235 KVQHLWKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
.+++..... ....+++|++|++++|..++ .....+..+++|++|++++|..+++.... .+..+++|+.|++.+|
T Consensus 161 ~i~~~~l~~--l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 161 NLQKSDLST--LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GSCHHHHHH--HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred ccccccccc--cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence 233221111 11556777888877776665 23344567778888888888777654332 2456788888888777
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.6e-13 Score=120.39 Aligned_cols=198 Identities=17% Similarity=0.116 Sum_probs=112.9
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
++++|+++++ ++..+++.. +.++++|++|+++++ .+..+ +......++.++.+.+.....+..++...
T Consensus 33 ~~~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~ls~n-~l~~i---------~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 100 (284)
T d1ozna_ 33 ASQRIFLHGN-RISHVPAAS-FRACRNLTILWLHSN-VLARI---------DAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (284)
T ss_dssp TCSEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CCCEEECcCC-cCCCCCHHH-hhccccccccccccc-ccccc---------ccccccccccccccccccccccccccchh
Confidence 4555555554 344433322 455555666666554 34444 22223444555555554444444442221
Q ss_pred ccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCC
Q 014100 160 ENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH 234 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 234 (430)
...+++|++|++.++......+ ...|+.+++++|.+..+.+ .....+++|+.|+++++
T Consensus 101 --~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--------------~~f~~~~~L~~L~l~~N- 163 (284)
T d1ozna_ 101 --FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--------------DTFRDLGNLTHLFLHGN- 163 (284)
T ss_dssp --TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------TTTTTCTTCCEEECCSS-
T ss_pred --hcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh--------------hHhccccchhhcccccC-
Confidence 3445556666665554211111 3355666666666554431 12345678888888874
Q ss_pred CceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 235 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
+++.+++..+ ..+++|+.+.+.++....-.|..+..+++|++|+++++. +..++.. .+..+++|++|++++.
T Consensus 164 ~l~~l~~~~f---~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~-~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 164 RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTE-ALAPLRALQYLRLNDN 235 (284)
T ss_dssp CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHH-HHTTCTTCCEEECCSS
T ss_pred cccccchhhh---ccccccchhhhhhccccccChhHhhhhhhcccccccccc-ccccccc-ccccccccCEEEecCC
Confidence 7787777666 778888888888865444445667778888888887754 4444432 3566788888888763
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.48 E-value=9.2e-14 Score=122.29 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=98.4
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.+|+.|++.+| ++.++.+ +..+++|++|++++| .+..+. . +..+++|+.+++.++. +++++
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~ls~n-~i~~~~----------~-l~~l~~l~~l~~~~n~-~~~i~ 101 (227)
T d1h6ua2 39 DLDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDN-QITDLA----------P-LKNLTKITELELSGNP-LKNVS 101 (227)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCCG----------G-GTTCCSCCEEECCSCC-CSCCG
T ss_pred HcCCcCEEECCCC-CCCcchh---HhcCCCCcEeecCCc-eeeccc----------c-cccccccccccccccc-ccccc
Confidence 4567777777766 4554322 556777777777776 333331 1 2566677777776642 33332
Q ss_pred cCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccC
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~ 233 (430)
. +..+++|+.+.+.+|......+ .+.+..+.++++.+.... .....++|+.|.+.++
T Consensus 102 ~----l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~~L~~L~l~~n 161 (227)
T d1h6ua2 102 A----IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS----------------PLAGLTNLQYLSIGNA 161 (227)
T ss_dssp G----GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG----------------GGGGCTTCCEEECCSS
T ss_pred c----ccccccccccccccccccccchhccccchhhhhchhhhhchhh----------------hhcccccccccccccc
Confidence 1 4556677777776655322111 334445555444433221 1234556666666654
Q ss_pred CCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEc
Q 014100 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 309 (430)
.+.... .+ ..+++|+.|++++| .++++++ +..+++|++|++++| .++.++. +..+++|+.|+++
T Consensus 162 -~~~~~~--~l---~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~ls 225 (227)
T d1h6ua2 162 -QVSDLT--PL---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLT 225 (227)
T ss_dssp -CCCCCG--GG---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEE
T ss_pred -ccccch--hh---cccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEee
Confidence 333321 12 55566666666665 4444432 455666666666665 3555542 4556666666664
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=6.7e-13 Score=119.61 Aligned_cols=169 Identities=15% Similarity=0.094 Sum_probs=79.1
Q ss_pred CccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCc
Q 014100 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
++++|+++++ .+..+++ ..+.++++|++|++++| .+..+ +. +..+++|++|+++++ .+...+..
T Consensus 32 ~l~~L~Ls~N-~i~~l~~-~~f~~l~~L~~L~L~~N-~l~~l---------~~--~~~l~~L~~L~Ls~N-~l~~~~~~- 95 (266)
T d1p9ag_ 32 DTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRA-ELTKL---------QV--DGTLPVLGTLDLSHN-QLQSLPLL- 95 (266)
T ss_dssp TCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTS-CCCEE---------EC--CSCCTTCCEEECCSS-CCSSCCCC-
T ss_pred CCCEEECcCC-cCCCcCH-HHhhccccccccccccc-ccccc---------cc--ccccccccccccccc-cccccccc-
Confidence 4555555554 3443322 22445555666666555 44444 11 134555566665553 23333222
Q ss_pred ccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCC
Q 014100 160 ENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH 234 (430)
Q Consensus 160 ~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 234 (430)
...+++|+.|+++++......+ ..+++.|.+++|.+..+.+ .....+++++.+++++ +
T Consensus 96 --~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~--------------~~~~~l~~l~~l~l~~-N 158 (266)
T d1p9ag_ 96 --GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP--------------GLLTPTPKLEKLSLAN-N 158 (266)
T ss_dssp --TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--------------TTTTTCTTCCEEECTT-S
T ss_pred --cccccccccccccccccceeeccccccccccccccccccccceecc--------------ccccccccchhccccc-c
Confidence 3445555555555543221111 2234444444444333220 1122345566666655 3
Q ss_pred CceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccC
Q 014100 235 KVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 285 (430)
+++.+++..+ ..+++|++|+++++ .++.+|..+..+++|+.|++++.
T Consensus 159 ~l~~~~~~~~---~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 159 NLTELPAGLL---NGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN 205 (266)
T ss_dssp CCSCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred cccccCcccc---ccccccceeecccC-CCcccChhHCCCCCCCEEEecCC
Confidence 5555544444 55556666666554 34455555555555565555543
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.5e-14 Score=131.98 Aligned_cols=218 Identities=16% Similarity=0.116 Sum_probs=128.8
Q ss_pred ccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccc
Q 014100 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 126 (430)
.....+|++|+++++. +...... .....+++|++|++++| .+...... .+.++++|++|++++|..+++. +
T Consensus 42 ~~~~~~L~~LdLs~~~-i~~~~l~--~l~~~c~~L~~L~L~~~-~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd~----~ 112 (284)
T d2astb2 42 HFSPFRVQHMDLSNSV-IEVSTLH--GILSQCSKLQNLSLEGL-RLSDPIVN-TLAKNSNLVRLNLSGCSGFSEF----A 112 (284)
T ss_dssp CCCCBCCCEEECTTCE-ECHHHHH--HHHTTBCCCSEEECTTC-BCCHHHHH-HHTTCTTCSEEECTTCBSCCHH----H
T ss_pred hccCCCCCEEECCCCc-cCHHHHH--HHHHhCCCccccccccc-CCCcHHHH-HHhcCCCCcCcccccccccccc----c
Confidence 3455688999998875 3311100 01256889999999988 34432222 3667889999999998776532 1
Q ss_pred ccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC-CcccccCCcceEEEecCCCCCcccCCCc
Q 014100 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFISNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 127 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~~~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
+. .+...+++|++|++++|..+++..........+++|+.|++.+|. .+++....
T Consensus 113 l~----~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~-------------------- 168 (284)
T d2astb2 113 LQ----TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-------------------- 168 (284)
T ss_dssp HH----HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--------------------
T ss_pred cc----hhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccc--------------------
Confidence 11 113567899999999887665431111102335789999998874 23221100
Q ss_pred ceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCccccc-ccCCcccCCCCCEEEEcc
Q 014100 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-LVTPSWHLENLATLEVSK 284 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~ 284 (430)
.-...+|+|++|++++|..+++.....+ ..+++|++|++++|..+++ ....+..+++|+.|++.+
T Consensus 169 -----------~l~~~~~~L~~L~L~~~~~itd~~~~~l---~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~ 234 (284)
T d2astb2 169 -----------TLVRRCPNLVHLDLSDSVMLKNDCFQEF---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234 (284)
T ss_dssp -----------HHHHHCTTCSEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred -----------ccccccccccccccccccCCCchhhhhh---cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence 0123467788888877766665444444 6677888888888776653 223455678888888887
Q ss_pred CCCccccccccccccccCccEEEEcccccchhh
Q 014100 285 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 285 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 317 (430)
| +.+-........+|+|+ + +|..+..+
T Consensus 235 ~--~~d~~l~~l~~~lp~L~---i-~~~~ls~~ 261 (284)
T d2astb2 235 I--VPDGTLQLLKEALPHLQ---I-NCSHFTTI 261 (284)
T ss_dssp S--SCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred C--CCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence 7 22221111234456655 3 45555544
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=1.6e-12 Score=114.14 Aligned_cols=186 Identities=16% Similarity=0.191 Sum_probs=137.0
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccc
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 127 (430)
..+.+|++|++.++. ++.+ .+. ..+++|++|++++| .+....+ +.++++|+++++++| .++.+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~l-~~l----~~l~~L~~L~ls~n-~i~~~~~---l~~l~~l~~l~~~~n-~~~~i------ 100 (227)
T d1h6ua2 38 ADLDGITTLSAFGTG-VTTI-EGV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGN-PLKNV------ 100 (227)
T ss_dssp HHHHTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSC-CCSCC------
T ss_pred HHcCCcCEEECCCCC-CCcc-hhH----hcCCCCcEeecCCc-eeecccc---ccccccccccccccc-ccccc------
Confidence 346789999999886 6653 333 67999999999987 4555434 678999999999987 44444
Q ss_pred cCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc---CCcceEEEecCCCCCcccCCC
Q 014100 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEE 204 (430)
Q Consensus 128 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~ 204 (430)
.+ +..+++|+.+++.++... .... ....+.++.+.+.++......+ .++|++|++++|.+....
T Consensus 101 ----~~-l~~l~~L~~l~l~~~~~~-~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--- 167 (227)
T d1h6ua2 101 ----SA-IAGLQSIKTLDLTSTQIT-DVTP----LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--- 167 (227)
T ss_dssp ----GG-GTTCTTCCEEECTTSCCC-CCGG----GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---
T ss_pred ----cc-cccccccccccccccccc-ccch----hccccchhhhhchhhhhchhhhhccccccccccccccccccch---
Confidence 12 267789999999876432 2211 4567888888887775433222 668999999988765533
Q ss_pred cceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEcc
Q 014100 205 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 284 (430)
..+.+++|+.|+++++ .++++.+ + ..+++|++|++++| .++.+++ +..+++|+.|++++
T Consensus 168 -------------~l~~l~~L~~L~Ls~n-~l~~l~~--l---~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 168 -------------PLANLSKLTTLKADDN-KISDISP--L---ASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp -------------GGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred -------------hhcccccceecccCCC-ccCCChh--h---cCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence 2567899999999985 7777532 3 78899999999998 6777764 67899999999863
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=1.9e-12 Score=117.70 Aligned_cols=209 Identities=14% Similarity=0.091 Sum_probs=148.8
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.++.+|..+. +++++|+++++. ++.++... ...+++|++|+++++ .+..+.+. .+..+..++.+.+..+..+
T Consensus 22 ~L~~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~---f~~l~~L~~L~ls~n-~l~~i~~~-~~~~~~~~~~l~~~~~~~~ 93 (284)
T d1ozna_ 22 GLQAVPVGIP--AASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAA-AFTGLALLEQLDLSDNAQL 93 (284)
T ss_dssp CCSSCCTTCC--TTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSCTTC
T ss_pred CCCccCCCCC--CCCCEEECcCCc-CCCCCHHH---hhccccccccccccc-cccccccc-ccccccccccccccccccc
Confidence 3566766543 578899999875 77665432 256788999999876 55554433 3667888888888777677
Q ss_pred cEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc------CCcceEEEe
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTT 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~------~~~L~~L~l 192 (430)
..+ +...+..+++|++|++.++. +..++.. ....+++|+.+++.++. ++.++ .+.|+.|++
T Consensus 94 ~~l---------~~~~~~~l~~L~~L~l~~n~-~~~~~~~--~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l 160 (284)
T d1ozna_ 94 RSV---------DPATFHGLGRLHTLHLDRCG-LQELGPG--LFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFL 160 (284)
T ss_dssp CCC---------CTTTTTTCTTCCEEECTTSC-CCCCCTT--TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred ccc---------cchhhcccccCCEEecCCcc-ccccccc--ccchhcccchhhhcccc-ccccChhHhccccchhhccc
Confidence 665 44445788899999998764 3333221 15567888999998765 55554 357889999
Q ss_pred cCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcc
Q 014100 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~ 272 (430)
++|.+..+.+ .....+++|+.++++++ .++.+.+..+ ..+++|++|+++++......+..+.
T Consensus 161 ~~N~l~~l~~--------------~~f~~l~~L~~l~l~~N-~l~~i~~~~f---~~l~~L~~L~l~~N~i~~~~~~~~~ 222 (284)
T d1ozna_ 161 HGNRISSVPE--------------RAFRGLHSLDRLLLHQN-RVAHVHPHAF---RDLGRLMTLYLFANNLSALPTEALA 222 (284)
T ss_dssp CSSCCCEECT--------------TTTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ccCcccccch--------------hhhccccccchhhhhhc-cccccChhHh---hhhhhcccccccccccccccccccc
Confidence 9988766541 22356789999999984 7778777777 8899999999999754443334567
Q ss_pred cCCCCCEEEEccCC
Q 014100 273 HLENLATLEVSKCH 286 (430)
Q Consensus 273 ~l~~L~~L~l~~c~ 286 (430)
.+++|+.|++++.+
T Consensus 223 ~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 223 PLRALQYLRLNDNP 236 (284)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccccCEEEecCCC
Confidence 88999999998754
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3e-12 Score=115.20 Aligned_cols=191 Identities=15% Similarity=0.080 Sum_probs=136.2
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
...+.+++.++. +++.+|+ . + -++|++|++++| .+..+ +.+.+..+++|++|+++++ .++.++.
T Consensus 9 ~~~~~~v~C~~~-~L~~iP~-~-l--p~~l~~L~Ls~N-~i~~l---------~~~~f~~l~~L~~L~L~~N-~l~~l~~ 72 (266)
T d1p9ag_ 9 VASHLEVNCDKR-NLTALPP-D-L--PKDTTILHLSEN-LLYTF---------SLATLMPYTRLTQLNLDRA-ELTKLQV 72 (266)
T ss_dssp STTCCEEECTTS-CCSSCCS-C-C--CTTCCEEECTTS-CCSEE---------EGGGGTTCTTCCEEECTTS-CCCEEEC
T ss_pred cCCCeEEEccCC-CCCeeCc-C-c--CcCCCEEECcCC-cCCCc---------CHHHhhccccccccccccc-ccccccc
Confidence 445555666654 5777543 2 2 258999999998 67777 4444588999999999986 5777654
Q ss_pred CcccccCCCCccEEEEecCCCccccc-----CCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEeccc
Q 014100 158 FTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 232 (430)
...+++|++|+++++. ++..+ .++|+.|+++++...++.. .....+++++.|++.+
T Consensus 73 ----~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------~~~~~l~~l~~L~l~~ 133 (266)
T d1p9ag_ 73 ----DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPL--------------GALRGLGELQELYLKG 133 (266)
T ss_dssp ----CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCS--------------STTTTCTTCCEEECTT
T ss_pred ----cccccccccccccccc-ccccccccccccccccccccccccceeec--------------cccccccccccccccc
Confidence 4678999999999875 44433 4578888888887655431 2234567888888887
Q ss_pred CCCceeecccCchhhhhcccccEEeeccCcccccccC-CcccCCCCCEEEEccCCCccccccccccccccCccEEEEccc
Q 014100 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 311 (430)
+ .++.++...+ ..+++++.++++++ .++.+++ .+..+++|++|+++++. ++.+|.. +..+++|+.|++++.
T Consensus 134 n-~l~~l~~~~~---~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~--~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 134 N-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTIPKG--FFGSHLLPFAFLHGN 205 (266)
T ss_dssp S-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTT--TTTTCCCSEEECCSC
T ss_pred c-ccceeccccc---cccccchhcccccc-cccccCccccccccccceeecccCC-CcccChh--HCCCCCCCEEEecCC
Confidence 4 7777766655 67788888988886 4555554 35678888999988764 7777653 456788888888764
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.36 E-value=3e-11 Score=112.45 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=39.9
Q ss_pred ccCccEEEEcccccchhhhcccccccCCcceeecccceeecccCCCCceecCCCcccCCCCccEEEeccCCCCccccCCC
Q 014100 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 379 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 379 (430)
+++|++|++++| .+.++. ..+++|+.|++.++ ++++++. . .++|++|++++|+ ++.+|..
T Consensus 283 ~~~L~~L~Ls~N-~l~~lp-----------~~~~~L~~L~L~~N-~L~~l~~-~----~~~L~~L~L~~N~-L~~lp~~- 342 (353)
T d1jl5a_ 283 PPSLEELNVSNN-KLIELP-----------ALPPRLERLIASFN-HLAEVPE-L----PQNLKQLHVEYNP-LREFPDI- 342 (353)
T ss_dssp CTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC-C----CTTCCEEECCSSC-CSSCCCC-
T ss_pred CCCCCEEECCCC-ccCccc-----------cccCCCCEEECCCC-cCCcccc-c----cCCCCEEECcCCc-CCCCCcc-
Confidence 466777777665 333332 11567777777654 4666553 1 4567777777664 6666653
Q ss_pred cCCCCceEEec
Q 014100 380 VDAPKLNKVKP 390 (430)
Q Consensus 380 ~~~~~L~~l~l 390 (430)
+.+|+.+.+
T Consensus 343 --~~~L~~L~~ 351 (353)
T d1jl5a_ 343 --PESVEDLRM 351 (353)
T ss_dssp --CTTCCEEEC
T ss_pred --ccccCeeEC
Confidence 345666655
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.3e-11 Score=109.21 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=51.1
Q ss_pred hhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCc
Q 014100 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 118 (430)
.++.+|..+ ++++++|+++++. ++.++... ...+++|++|+++++..... .+...+.++++++++.+..+..+
T Consensus 19 ~l~~iP~~l--~~~l~~L~Ls~n~-i~~l~~~~---f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~~~~~n~l 91 (242)
T d1xwdc1 19 KVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA---FSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNL 91 (242)
T ss_dssp SCSSCCSCS--CSCCSEEEEESCC-CCEECTTT---TTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEEEECCTTC
T ss_pred CCCCcCCCC--CCCCCEEECcCCc-CCccChhH---hhccchhhhhhhccccccce-eeccccccccccccccccccccc
Confidence 344555544 2466677776654 55444322 13466677777766533222 22222455666666666665555
Q ss_pred cEeeccccccCCcCCCcccccccceeecccc
Q 014100 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 149 (430)
... +...+..+++|+.|++.++
T Consensus 92 ~~~---------~~~~~~~l~~L~~l~l~~~ 113 (242)
T d1xwdc1 92 LYI---------NPEAFQNLPNLQYLLISNT 113 (242)
T ss_dssp CEE---------CTTSEECCTTCCEEEEESC
T ss_pred ccc---------ccccccccccccccccchh
Confidence 554 3333456666666666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.2e-11 Score=105.77 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=53.6
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
++++++|+++++ .+..+++. .+.++++|++|++++|.....+ +...+..+++++++.+..+..+...+.
T Consensus 28 ~~~l~~L~Ls~n-~i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i---------~~~~f~~l~~l~~l~~~~~n~l~~~~~ 96 (242)
T d1xwdc1 28 PRNAIELRFVLT-KLRVIQKG-AFSGFGDLEKIEISQNDVLEVI---------EADVFSNLPKLHEIRIEKANNLLYINP 96 (242)
T ss_dssp CSCCSEEEEESC-CCCEECTT-TTTTCTTCCEEEEESCTTCCEE---------CSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred CCCCCEEECcCC-cCCccChh-Hhhccchhhhhhhcccccccee---------ecccccccccccccccccccccccccc
Confidence 357777888776 45554432 2567777888888777555444 344446667777777666555554432
Q ss_pred CcccccCCCCccEEEEecCC
Q 014100 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~ 177 (430)
. ....+++|+.+.+.++.
T Consensus 97 ~--~~~~l~~L~~l~l~~~~ 114 (242)
T d1xwdc1 97 E--AFQNLPNLQYLLISNTG 114 (242)
T ss_dssp T--SEECCTTCCEEEEESCC
T ss_pred c--cccccccccccccchhh
Confidence 2 14566777777776653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.28 E-value=1.9e-11 Score=105.84 Aligned_cols=166 Identities=21% Similarity=0.271 Sum_probs=107.9
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.+|++|++++| .+..+.+ +..+++|++|++++| .+..+ + . ...+++|+.|+++++ .+++++
T Consensus 44 ~L~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~L~~n-~i~~l---------~-~-~~~l~~L~~L~l~~n-~i~~l~ 106 (210)
T d1h6ta2 44 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------K-P-LANLKNLGWLFLDEN-KVKDLS 106 (210)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------G-G-GTTCTTCCEEECCSS-CCCCGG
T ss_pred HhcCccEEECcCC-CCCCchh---HhhCCCCCEEeCCCc-cccCc---------c-c-cccCccccccccccc-cccccc
Confidence 4678899999887 5555433 567899999999988 55544 1 1 256788889998875 466554
Q ss_pred cCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
. ...+++|+.|++.+|.. ..+ .....++.++.+++.++ .+
T Consensus 107 ~----l~~l~~L~~L~l~~~~~-~~~----------------------------------~~l~~l~~l~~l~~~~n-~l 146 (210)
T d1h6ta2 107 S----LKDLKKLKSLSLEHNGI-SDI----------------------------------NGLVHLPQLESLYLGNN-KI 146 (210)
T ss_dssp G----GTTCTTCCEEECTTSCC-CCC----------------------------------GGGGGCTTCCEEECCSS-CC
T ss_pred c----ccccccccccccccccc-ccc----------------------------------ccccccccccccccccc-cc
Confidence 2 56678888888877652 111 12345567777777663 44
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcc
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 310 (430)
++... . ..+++|+.++++++ .+..++ .+..+++|+.|++++| .+++++. +.++++|++|++++
T Consensus 147 ~~~~~--~---~~l~~L~~l~l~~n-~l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 147 TDITV--L---SRLTKLDTLSLEDN-QISDIV-PLAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFS 209 (210)
T ss_dssp CCCGG--G---GGCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEE
T ss_pred ccccc--c---cccccccccccccc-cccccc-cccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEccC
Confidence 44321 2 56677777777776 344443 2556777888888776 4666653 46677788877753
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.27 E-value=2e-11 Score=105.66 Aligned_cols=164 Identities=18% Similarity=0.296 Sum_probs=111.0
Q ss_pred CCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccC
Q 014100 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 129 (430)
+.+|++|+++++. +..+ .+. ..+++|++|++++| .++.+.+ +..+++|++|++++| .+..+
T Consensus 45 L~~L~~L~l~~~~-i~~l-~~l----~~l~~L~~L~L~~n-~i~~l~~---~~~l~~L~~L~l~~n-~i~~l-------- 105 (210)
T d1h6ta2 45 LNSIDQIIANNSD-IKSV-QGI----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDL-------- 105 (210)
T ss_dssp HHTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCG--------
T ss_pred hcCccEEECcCCC-CCCc-hhH----hhCCCCCEEeCCCc-cccCccc---cccCccccccccccc-ccccc--------
Confidence 5679999999876 5542 233 67999999999998 5666543 568999999999998 56554
Q ss_pred CcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceec
Q 014100 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 130 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
+ . ...+++|+.|++.++. ...++. ...++.++.+.+.++. ++..+
T Consensus 106 -~-~-l~~l~~L~~L~l~~~~-~~~~~~----l~~l~~l~~l~~~~n~-l~~~~-------------------------- 150 (210)
T d1h6ta2 106 -S-S-LKDLKKLKSLSLEHNG-ISDING----LVHLPQLESLYLGNNK-ITDIT-------------------------- 150 (210)
T ss_dssp -G-G-GTTCTTCCEEECTTSC-CCCCGG----GGGCTTCCEEECCSSC-CCCCG--------------------------
T ss_pred -c-c-cccccccccccccccc-cccccc----cccccccccccccccc-ccccc--------------------------
Confidence 2 2 3678999999999874 333322 6677888888887764 33221
Q ss_pred cCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEc
Q 014100 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVS 283 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 283 (430)
....+++|+.++++++ .++.+.+ + ..+++|+.|++++| .+++++ .+..+++|+.|+++
T Consensus 151 --------~~~~l~~L~~l~l~~n-~l~~i~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 151 --------VLSRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp --------GGGGCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred --------cccccccccccccccc-ccccccc--c---cCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence 1234566777777664 4554422 2 56677777777765 455554 35667777777765
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.27 E-value=2.6e-11 Score=103.97 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=95.6
Q ss_pred CCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccc
Q 014100 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.++++++|++++| .+.++.. ++.+++|++|++++| .+..+ +. +..+++|++|+++++. +..++
T Consensus 38 ~l~~l~~L~l~~~-~i~~l~~---l~~l~nL~~L~Ls~N-~l~~~---------~~--l~~l~~L~~L~l~~n~-~~~~~ 100 (199)
T d2omxa2 38 DLDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNN-QLTDI---------TP--LKNLTKLVDILMNNNQ-IADIT 100 (199)
T ss_dssp HHTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------GG--GTTCTTCCEEECCSSC-CCCCG
T ss_pred HhcCCCEEECCCC-CCCCccc---cccCCCcCcCccccc-cccCc---------cc--ccCCcccccccccccc-ccccc
Confidence 4677777887776 4554322 556778888888877 45444 11 2567778888877653 33332
Q ss_pred cCcccccCCCCccEEEEecCCCcccccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCc
Q 014100 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 236 (430)
. +..+++|+.|++.+|..... .....+++|+.|+++++ .+
T Consensus 101 ~----l~~l~~L~~L~l~~~~~~~~-----------------------------------~~~~~l~~L~~L~l~~n-~l 140 (199)
T d2omxa2 101 P----LANLTNLTGLTLFNNQITDI-----------------------------------DPLKNLTNLNRLELSSN-TI 140 (199)
T ss_dssp G----GTTCTTCSEEECCSSCCCCC-----------------------------------GGGTTCTTCSEEECCSS-CC
T ss_pred c----cccccccccccccccccccc-----------------------------------cccchhhhhHHhhhhhh-hh
Confidence 2 55667777777766553221 11344566777777664 34
Q ss_pred eeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEE
Q 014100 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRM 306 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 306 (430)
..+. .+ ..+++|+.|++.+| .++.++ .+..+++|+.|+++++ .+++++. +..+++|++|
T Consensus 141 ~~~~--~l---~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L 199 (199)
T d2omxa2 141 SDIS--AL---SGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDISV---LAKLTNLESL 199 (199)
T ss_dssp CCCG--GG---TTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred cccc--cc---cccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence 4331 22 55667777777665 344443 3556777777777776 3666542 4556666664
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.25 E-value=3e-10 Score=105.45 Aligned_cols=270 Identities=16% Similarity=0.139 Sum_probs=138.5
Q ss_pred CCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCC
Q 014100 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 130 (430)
.++++|+++++. ++.++ ...++|++|+++++ +++.++. .+.+|++|++++| .+..+
T Consensus 38 ~~l~~LdLs~~~-L~~lp-------~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~l~~n-~l~~l--------- 93 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSSLP-------ELPPHLESLVASCN-SLTELPE-----LPQSLKSLLVDNN-NLKAL--------- 93 (353)
T ss_dssp HTCSEEECTTSC-CSCCC-------SCCTTCSEEECCSS-CCSSCCC-----CCTTCCEEECCSS-CCSCC---------
T ss_pred cCCCEEEeCCCC-CCCCC-------CCCCCCCEEECCCC-CCccccc-----chhhhhhhhhhhc-ccchh---------
Confidence 467788888765 55432 23567888888765 5666432 2467888888876 44433
Q ss_pred cCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc--CCcceEEEecCCCCCcccCCCccee
Q 014100 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+ .-.+.|++|+++++ .+..++. ...+++|+.|++.++.. +..+ ...+..+.+..+......
T Consensus 94 ~----~lp~~L~~L~L~~n-~l~~lp~----~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~------- 156 (353)
T d1jl5a_ 94 S----DLPPLLEYLGVSNN-QLEKLPE----LQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEELP------- 156 (353)
T ss_dssp C----SCCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCC-------
T ss_pred h----hhcccccccccccc-ccccccc----hhhhccceeeccccccc-cccccccccccchhhccccccccc-------
Confidence 1 11145888888765 4665553 45677888888877653 3222 345555555544432211
Q ss_pred ccCccccCCcCCCCCCCcEEecccCC-------------------CceeecccCchhhhhcccccEEeeccCcccccccC
Q 014100 209 TDQIQPLFDEKVAFPQLRYLELSRLH-------------------KVQHLWKENDESNKAFANLIRLKISECSKLQKLVT 269 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~L~~~~-------------------~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 269 (430)
..+.++.++.+.+.++. .+..++ .. ..++.|+.+.++++. ...++.
T Consensus 157 ---------~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~--~~---~~l~~L~~l~l~~n~-~~~~~~ 221 (353)
T d1jl5a_ 157 ---------ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP--EL---QNLPFLTTIYADNNL-LKTLPD 221 (353)
T ss_dssp ---------CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC--CC---TTCTTCCEEECCSSC-CSSCCS
T ss_pred ---------cccccccceecccccccccccccccccccccccccccccccc--cc---ccccccccccccccc-cccccc
Confidence 12223333444333321 111111 11 444555666555532 222221
Q ss_pred CcccCCCCCEEEEccCCCccccccccccccccCccEEEEcc--cccchhhhccc------ccccCCcceeecccceeecc
Q 014100 270 PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD--CKMIEQIIQLQ------VGEEAKGCVVFEELGYLGLD 341 (430)
Q Consensus 270 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~--c~~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~ 341 (430)
...++..+.+..+.. ...+ ...+.+...++.. +..+....... ..........+++|++|+++
T Consensus 222 ---~~~~l~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls 292 (353)
T d1jl5a_ 222 ---LPPSLEALNVRDNYL-TDLP-----ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVS 292 (353)
T ss_dssp ---CCTTCCEEECCSSCC-SCCC-----CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECC
T ss_pred ---ccccccccccccccc-cccc-----cccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECC
Confidence 223344444433221 1111 1112222222211 01111110000 00000111236889999999
Q ss_pred cCCCCceecCCCcccCCCCccEEEeccCCCCccccCCCcCCCCceEEecccCCC
Q 014100 342 CLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 342 ~c~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~L~~l~l~~~~~ 395 (430)
+| +++.++. .+++|++|++++| +++.+|.. +++|+++++++++.
T Consensus 293 ~N-~l~~lp~-----~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~L 336 (353)
T d1jl5a_ 293 NN-KLIELPA-----LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNPL 336 (353)
T ss_dssp SS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSCC
T ss_pred CC-ccCcccc-----ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCcC
Confidence 87 5777763 2689999999876 67788753 56899999988764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.24 E-value=5e-11 Score=102.14 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=114.3
Q ss_pred hhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccc
Q 014100 102 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET 181 (430)
Q Consensus 102 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 181 (430)
..++++++|++++| .+.++ .++ ..+++|++|+++++ .+++++. +..+++|++|++.+|.. ..
T Consensus 37 ~~l~~l~~L~l~~~-~i~~l----------~~l-~~l~nL~~L~Ls~N-~l~~~~~----l~~l~~L~~L~l~~n~~-~~ 98 (199)
T d2omxa2 37 TDLDQVTTLQADRL-GIKSI----------DGV-EYLNNLTQINFSNN-QLTDITP----LKNLTKLVDILMNNNQI-AD 98 (199)
T ss_dssp HHHTTCCEEECTTS-CCCCC----------TTG-GGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSCC-CC
T ss_pred HHhcCCCEEECCCC-CCCCc----------ccc-ccCCCcCcCccccc-cccCccc----ccCCccccccccccccc-cc
Confidence 45788999999987 45444 222 67889999999886 4665543 66778888888877642 11
Q ss_pred ccCCcceEEEecCCCCCcccCCCcceeccCccccCCcCCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccC
Q 014100 182 FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 182 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
+ .....++.|+.|+++++. .... ..+ ..+++|+.|+++++
T Consensus 99 ~----------------------------------~~l~~l~~L~~L~l~~~~-~~~~--~~~---~~l~~L~~L~l~~n 138 (199)
T d2omxa2 99 I----------------------------------TPLANLTNLTGLTLFNNQ-ITDI--DPL---KNLTNLNRLELSSN 138 (199)
T ss_dssp C----------------------------------GGGTTCTTCSEEECCSSC-CCCC--GGG---TTCTTCSEEECCSS
T ss_pred c----------------------------------cccccccccccccccccc-cccc--ccc---chhhhhHHhhhhhh
Confidence 1 124568899999998863 3332 223 77899999999987
Q ss_pred cccccccCCcccCCCCCEEEEccCCCccccccccccccccCccEEEEcccccchhhhcccccccCCcceeeccccee
Q 014100 262 SKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYL 338 (430)
Q Consensus 262 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 338 (430)
. +..++ .+..+++|+.|++.+| .+++++. +..+++|++|+++++ .++++. ....+++|+.|
T Consensus 139 ~-l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~---l~~l~~L~~L~ls~N-~i~~i~---------~l~~L~~L~~L 199 (199)
T d2omxa2 139 T-ISDIS-ALSGLTSLQQLNFSSN-QVTDLKP---LANLTTLERLDISSN-KVSDIS---------VLAKLTNLESL 199 (199)
T ss_dssp C-CCCCG-GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG---------GGGGCTTCSEE
T ss_pred h-hcccc-cccccccccccccccc-cccCCcc---ccCCCCCCEEECCCC-CCCCCc---------cccCCCCCCcC
Confidence 4 55553 4678899999999886 4666653 578999999999997 466542 12236677654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.4e-09 Score=88.03 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
...++++|+++++. +..++... ..+++|+.|+++++ .+.++.. +..+++|++|++++| .+..+
T Consensus 16 n~~~lr~L~L~~n~-I~~i~~~~----~~l~~L~~L~Ls~N-~i~~l~~---~~~l~~L~~L~ls~N-~i~~l------- 78 (162)
T d1a9na_ 16 NAVRDRELDLRGYK-IPVIENLG----ATLDQFDAIDFSDN-EIRKLDG---FPLLRRLKTLLVNNN-RICRI------- 78 (162)
T ss_dssp CTTSCEEEECTTSC-CCSCCCGG----GGTTCCSEEECCSS-CCCEECC---CCCCSSCCEEECCSS-CCCEE-------
T ss_pred CcCcCcEEECCCCC-CCccCccc----cccccCCEEECCCC-CCCccCC---cccCcchhhhhcccc-cccCC-------
Confidence 44556666666554 44332211 34556666666665 3444321 345566666666665 34444
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+.+++..+++|+.|+++++ .+.+++.- ..+..+++|++|++.+|+
T Consensus 79 --~~~~~~~l~~L~~L~L~~N-~i~~~~~l-~~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 79 --GEGLDQALPDLTELILTNN-SLVELGDL-DPLASLKSLTYLCILRNP 123 (162)
T ss_dssp --CSCHHHHCTTCCEEECCSC-CCCCGGGG-GGGGGCTTCCEEECCSSG
T ss_pred --Cccccccccccccceeccc-cccccccc-cccccccccchhhcCCCc
Confidence 3333345566666666554 23333211 113445555555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=1.7e-09 Score=88.96 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=94.5
Q ss_pred cccccceeeeEeecccccccCccchhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCC
Q 014100 14 IVSTPKLHEVQVKGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNML 93 (430)
Q Consensus 14 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 93 (430)
+.+..+|+.+.+ ..+.++.++.....+++|++|+++++. ++.+ .+. ..+++|++|++++| .+.
T Consensus 14 ~~n~~~lr~L~L----------~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l-~~~----~~l~~L~~L~ls~N-~i~ 76 (162)
T d1a9na_ 14 YTNAVRDRELDL----------RGYKIPVIENLGATLDQFDAIDFSDNE-IRKL-DGF----PLLRRLKTLLVNNN-RIC 76 (162)
T ss_dssp EECTTSCEEEEC----------TTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE-CCC----CCCSSCCEEECCSS-CCC
T ss_pred ccCcCcCcEEEC----------CCCCCCccCccccccccCCEEECCCCC-CCcc-CCc----ccCcchhhhhcccc-ccc
Confidence 456678899998 445666675545678999999999986 7765 233 67999999999998 567
Q ss_pred cCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC-cccccCCCCccEEE
Q 014100 94 SAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF-TENIIEMPELRYLA 172 (430)
Q Consensus 94 ~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~l~~L~~L~ 172 (430)
.+++ ..+..+++|++|++++| .+..+.. + .....+++|++|++++++ +...+.. ...+..+|+|+.|+
T Consensus 77 ~l~~-~~~~~l~~L~~L~L~~N-~i~~~~~---l-----~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 77 RIGE-GLDQALPDLTELILTNN-SLVELGD---L-----DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EECS-CHHHHCTTCCEEECCSC-CCCCGGG---G-----GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred CCCc-cccccccccccceeccc-ccccccc---c-----cccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence 6544 34678999999999998 5544411 1 113678999999999975 4444321 01156788898886
Q ss_pred Ee
Q 014100 173 IE 174 (430)
Q Consensus 173 l~ 174 (430)
-.
T Consensus 146 ~~ 147 (162)
T d1a9na_ 146 FQ 147 (162)
T ss_dssp TE
T ss_pred CC
Confidence 43
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=3.8e-08 Score=76.78 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=6.4
Q ss_pred hhcCCCCEEEEecC
Q 014100 102 RCLNNLRWLEVRNC 115 (430)
Q Consensus 102 ~~l~~L~~L~l~~c 115 (430)
.++++|++|++++|
T Consensus 17 ~~l~~L~~L~ls~N 30 (124)
T d1dcea3 17 EQLLLVTHLDLSHN 30 (124)
T ss_dssp GGGTTCCEEECCSS
T ss_pred ccCCCCCEEECCCC
Confidence 34444444444444
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.69 E-value=2.2e-08 Score=84.64 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=85.3
Q ss_pred hhhhhhhhcccCCCCcceeecccccccee-eccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQE-IWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 116 (430)
+.++.+|..+ .+++++|+++++. +.. +... ....+++|+.|+++++ .+...++. .+..+++|++|++++|
T Consensus 18 ~~L~~iP~~l--p~~l~~L~Ls~N~-i~~~~~~~---~f~~l~~L~~L~L~~N-~i~~~~~~-~~~~~~~L~~L~Ls~N- 88 (192)
T d1w8aa_ 18 RGLKEIPRDI--PLHTTELLLNDNE-LGRISSDG---LFGRLPHLVKLELKRN-QLTGIEPN-AFEGASHIQELQLGEN- 88 (192)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSCC-CCSBCCSC---SGGGCTTCCEEECCSS-CCCCBCTT-TTTTCTTCCEEECCSC-
T ss_pred CCcCccCCCC--CCCCCEEEeCCCC-Cccccccc---ccCCCceEeeeecccc-cccccccc-ccccccccceeeeccc-
Confidence 5566777766 3789999999876 542 2111 1246789999999887 45554443 3778899999999988
Q ss_pred CccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
.+..+ +...+..+++|++|+++++ .++.++.+. ...+++|++|++.+++
T Consensus 89 ~l~~l---------~~~~F~~l~~L~~L~L~~N-~l~~i~~~~--f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 89 KIKEI---------SNKMFLGLHQLKTLNLYDN-QISCVMPGS--FEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEE---------CSSSSTTCTTCCEEECCSS-CCCEECTTS--STTCTTCCEEECTTCC
T ss_pred ccccc---------CHHHHhCCCcccccccCCc-cccccCHHH--hcCCcccccccccccc
Confidence 77777 5666788999999999885 577775542 4567788888777665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.56 E-value=1.5e-07 Score=79.34 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=61.0
Q ss_pred CCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeecccccccccccc
Q 014100 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.+++++|+++++ .+....+...+.++++|++|++++| .+..+ +.+.+..+++|++|+++++ .+..++.
T Consensus 28 p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~---------~~~~~~~~~~L~~L~Ls~N-~l~~l~~ 95 (192)
T d1w8aa_ 28 PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGI---------EPNAFEGASHIQELQLGEN-KIKEISN 95 (192)
T ss_dssp CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCB---------CTTTTTTCTTCCEEECCSC-CCCEECS
T ss_pred CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccc-ccccc---------cccccccccccceeeeccc-cccccCH
Confidence 367888888886 4554444444778888888888887 44444 3444577888888888875 5666654
Q ss_pred CcccccCCCCccEEEEecCCCcccc
Q 014100 158 FTENIIEMPELRYLAIENCPDMETF 182 (430)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~c~~l~~~ 182 (430)
.. ...+++|++|+++++. ++.+
T Consensus 96 ~~--F~~l~~L~~L~L~~N~-l~~i 117 (192)
T d1w8aa_ 96 KM--FLGLHQLKTLNLYDNQ-ISCV 117 (192)
T ss_dssp SS--STTCTTCCEEECCSSC-CCEE
T ss_pred HH--HhCCCcccccccCCcc-cccc
Confidence 42 4567777777777764 4443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=1.6e-07 Score=73.06 Aligned_cols=85 Identities=18% Similarity=0.108 Sum_probs=55.3
Q ss_pred CCCCCCCcEEecccCCCceeecccCchhhhhcccccEEeeccCcccccccCCcccCCCCCEEEEccCCCccccccccccc
Q 014100 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 298 (430)
.+.+++|++|++++ +.++.++. .+ ..+++|+.|+++++ .++.++ .+..+++|+.|+++++ .+..++....+.
T Consensus 16 l~~l~~L~~L~ls~-N~l~~lp~-~~---~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~ 87 (124)
T d1dcea3 16 LEQLLLVTHLDLSH-NRLRALPP-AL---AALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLV 87 (124)
T ss_dssp GGGGTTCCEEECCS-SCCCCCCG-GG---GGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGG
T ss_pred cccCCCCCEEECCC-CccCcchh-hh---hhhhcccccccccc-cccccC-ccccccccCeEECCCC-ccCCCCCchhhc
Confidence 45667788888876 46776643 34 66777888888774 555554 3667777888887764 355554322355
Q ss_pred cccCccEEEEccc
Q 014100 299 SLVNLGRMKIADC 311 (430)
Q Consensus 299 ~l~~L~~L~l~~c 311 (430)
.+++|+.|++++.
T Consensus 88 ~~~~L~~L~l~~N 100 (124)
T d1dcea3 88 SCPRLVLLNLQGN 100 (124)
T ss_dssp GCTTCCEEECTTS
T ss_pred CCCCCCEEECCCC
Confidence 6777777777664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.50 E-value=5e-10 Score=95.56 Aligned_cols=117 Identities=16% Similarity=0.148 Sum_probs=82.3
Q ss_pred hhhhhhhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+.+++..+..+++|++|+++++. ++++. +. ..+++|++|++++| .+..+++. ...+++|++|++++| .
T Consensus 35 ~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l----~~l~~L~~L~Ls~N-~i~~i~~~--~~~~~~L~~L~l~~N-~ 104 (198)
T d1m9la_ 35 PPIEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMENLRILSLGRN-LIKKIENL--DAVADTLEELWISYN-Q 104 (198)
T ss_dssp TTCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CH----HHHTTCCEEECCEE-EECSCSSH--HHHHHHCCEEECSEE-E
T ss_pred CchhhhhhHHhcccccceeECcccC-CCCcc-cc----cCCccccChhhccc-cccccccc--ccccccccccccccc-c
Confidence 3455667778888999999999775 66542 22 56889999999987 46665432 445678999999988 5
Q ss_pred ccEeeccccccCCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+..+ + . +..+++|+.|+++++ .+++++.- ..+..+++|+.|++++++
T Consensus 105 i~~l---------~-~-~~~l~~L~~L~L~~N-~i~~~~~~-~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 105 IASL---------S-G-IEKLVNLRVLYMSNN-KITNWGEI-DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CCCH---------H-H-HHHHHHSSEEEESEE-ECCCHHHH-HHHTTTTTCSEEEECSSH
T ss_pred cccc---------c-c-ccccccccccccccc-hhcccccc-ccccCCCccceeecCCCc
Confidence 5544 1 1 267789999999875 35444321 116778999999998876
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=1.2e-08 Score=97.66 Aligned_cols=186 Identities=16% Similarity=0.054 Sum_probs=100.6
Q ss_pred CCCCCcEEecccCCCceeecc-cCchhhhhcccccEEeeccCcccc----cccCCc-ccCCCCCEEEEccCCCccccccc
Q 014100 221 AFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQ----KLVTPS-WHLENLATLEVSKCHGLINVLTL 294 (430)
Q Consensus 221 ~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~----~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~ 294 (430)
....++.++++++ .+..... .........+.++.++++++..-. .+...+ .....|+.+.+++|. +......
T Consensus 253 ~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~ 330 (460)
T d1z7xw1 253 PSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS 330 (460)
T ss_dssp TTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc-hhhhhhh
Confidence 4568888888876 3322211 111112556788888888764321 111111 134578999998875 3322111
Q ss_pred ---cccccccCccEEEEcccccchhhhcccccccCCcc-eeecccceeecccCCCCceecC---CCcccCCCCccEEEec
Q 014100 295 ---STSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC-VVFEELGYLGLDCLPSLTSFCL---GNYALEFPSLEHVVVR 367 (430)
Q Consensus 295 ---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~~~L~~L~l~ 367 (430)
......++|++|+++++. +.+.... ..+... ...+.|++|++++| .+++... ......+++|++|+++
T Consensus 331 ~l~~~~~~~~~L~~L~Ls~N~-i~~~g~~---~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls 405 (460)
T d1z7xw1 331 HFSSVLAQNRFLLELQISNNR-LEDAGVR---ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLS 405 (460)
T ss_dssp HHHHHHHHCSSCCEEECCSSB-CHHHHHH---HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred hcccccccccchhhhheeeec-ccCcccc---hhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECC
Confidence 123455789999998864 4432100 000011 12456999999998 5654211 1122347899999998
Q ss_pred cCCCCcc-----ccCCCc-CCCCceEEecccCCCCCCcccccCchHHHHHHHHHHhhccc
Q 014100 368 QCPTMKI-----FSQGVV-DAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKE 421 (430)
Q Consensus 368 ~c~~l~~-----l~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 421 (430)
++ .++. +...+. ...+|+.+.+.++. |.....+.+..+......++
T Consensus 406 ~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~-------~~~~~~~~l~~l~~~~~~l~ 457 (460)
T d1z7xw1 406 NN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY-------WSEEMEDRLQALEKDKPSLR 457 (460)
T ss_dssp SS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC-------CCHHHHHHHHHHHHHCTTSE
T ss_pred CC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC-------CCHHHHHHHHHHHHhCCCCE
Confidence 86 4432 111121 33479999985543 33444556666666555544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.28 E-value=1.2e-07 Score=87.60 Aligned_cols=88 Identities=9% Similarity=0.063 Sum_probs=52.6
Q ss_pred cccccccCccchhhhhhhhcccCCCCcceeeccccccceee-ccCCCCCCCCCCCccEEEeecCcC--CCcCCch-----
Q 014100 27 GELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTN--MLSAIPA----- 98 (430)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c~~--l~~~~~~----- 98 (430)
|+.+..+......++.+...+.....|++|+++++. +.+. +..........++|+.|+++++.. .....+.
T Consensus 7 ~~~L~l~~~~~e~~~~l~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l 85 (344)
T d2ca6a1 7 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 85 (344)
T ss_dssp TCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHH
Confidence 333333444556678888888889999999999874 4310 000000124678999999987631 1111111
Q ss_pred -hHHhhcCCCCEEEEecC
Q 014100 99 -NLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 99 -~~~~~l~~L~~L~l~~c 115 (430)
..+..+++|++|++++|
T Consensus 86 ~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 86 LQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp HHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCccccccccc
Confidence 12445788888888887
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=1.6e-06 Score=70.07 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=27.8
Q ss_pred hhhcccCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecC
Q 014100 43 CYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 43 l~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 115 (430)
+|..+..+++|++|++.+++.++.+.... ...+++|+.|+++++ ++..+.+. .+.++++|++|++++|
T Consensus 23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~---f~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N 90 (156)
T d2ifga3 23 SLHHLPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN 90 (156)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS
T ss_pred CcccccCccccCeeecCCCccccccCchh---hccccccCcceeecc-ccCCcccc-cccccccccceeccCC
Confidence 33344444444454444443344332221 123444444444443 33333222 2344444444444444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.6e-06 Score=70.13 Aligned_cols=109 Identities=18% Similarity=0.122 Sum_probs=79.9
Q ss_pred CCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeecccccc
Q 014100 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 128 (430)
.+...+.++..+.. +.++.... ..+++|++|++.+...+..+.+.. +.++++|++|++++| .+..+
T Consensus 6 ~c~~~~~l~c~~~~-~~~~p~~l----~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i------- 71 (156)
T d2ifga3 6 CPHGSSGLRCTRDG-ALDSLHHL----PGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFV------- 71 (156)
T ss_dssp CCSSSSCEECCSSC-CCTTTTTS----CSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEE-------
T ss_pred CcCCCCeEEecCCC-CccCcccc----cCccccCeeecCCCccccccCchh-hccccccCcceeecc-ccCCc-------
Confidence 34445566666544 33333333 567899999998776677765544 788999999999998 78887
Q ss_pred CCcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCC
Q 014100 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 129 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 177 (430)
+...+..+++|++|+++++ .++.++.+ .....+|+.|++++++
T Consensus 72 --~~~~f~~l~~L~~L~Ls~N-~l~~l~~~---~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 72 --APDAFHFTPRLSRLNLSFN-ALESLSWK---TVQGLSLQELVLSGNP 114 (156)
T ss_dssp --CTTGGGSCSCCCEEECCSS-CCSCCCST---TTCSCCCCEEECCSSC
T ss_pred --ccccccccccccceeccCC-CCcccChh---hhccccccccccCCCc
Confidence 5566688999999999985 57777765 4445579999999876
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.21 E-value=2.3e-08 Score=84.92 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=85.7
Q ss_pred CCcceeecccc-ccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccC
Q 014100 51 RDIKYLQLGHF-PRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 51 ~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 129 (430)
..++.+++.+. +.++.+.... ..+++|++|+++++ ++..+.+ +.++++|++|++++| .+..+
T Consensus 23 ~~~~~~~l~~~~~~i~~l~~sl----~~L~~L~~L~Ls~n-~I~~i~~---l~~l~~L~~L~Ls~N-~i~~i-------- 85 (198)
T d1m9la_ 23 TEAEKVELHGMIPPIEKMDATL----STLKACKHLALSTN-NIEKISS---LSGMENLRILSLGRN-LIKKI-------- 85 (198)
T ss_dssp TTCSCEECCBCCTTCCCCHHHH----HHTTTCCEEECSEE-EESCCCC---HHHHTTCCEEECCEE-EECSC--------
T ss_pred cccceeeeecccCchhhhhhHH----hcccccceeECccc-CCCCccc---ccCCccccChhhccc-ccccc--------
Confidence 34555666532 3344333222 56899999999987 5666533 678999999999998 45444
Q ss_pred CcCCCcccccccceeeccccccccccccCcccccCCCCccEEEEecCCCccccc-------CCcceEEEecCCCCCc
Q 014100 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 130 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~ 199 (430)
+ .+...+++|+.|++.++ .++.++. +..+++|+.|+++++. ++.++ .++|++|++++|++..
T Consensus 86 -~-~~~~~~~~L~~L~l~~N-~i~~l~~----~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~ 154 (198)
T d1m9la_ 86 -E-NLDAVADTLEELWISYN-QIASLSG----IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp -S-SHHHHHHHCCEEECSEE-ECCCHHH----HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred -c-ccccccccccccccccc-ccccccc----ccccccccccccccch-hccccccccccCCCccceeecCCCcccc
Confidence 2 22245678999999886 5666532 6778999999999875 33322 5789999999997543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.09 E-value=5.8e-07 Score=82.86 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=40.8
Q ss_pred ecccceeecccCCCCce-----ecCCCcccCCCCccEEEeccCCCCcc-----ccCCCc-CCCCceEEecccCCCCCCcc
Q 014100 332 FEELGYLGLDCLPSLTS-----FCLGNYALEFPSLEHVVVRQCPTMKI-----FSQGVV-DAPKLNKVKPTEEEDGDDEG 400 (430)
Q Consensus 332 ~~~L~~L~l~~c~~l~~-----~~~~~~~~~~~~L~~L~l~~c~~l~~-----l~~~~~-~~~~L~~l~l~~~~~~~~~~ 400 (430)
.+.|++|.+++|. +.+ +.........+.|++|+++++. ++. +...+. ..++|+++++.|+..
T Consensus 242 ~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~----- 314 (344)
T d2ca6a1 242 WPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF----- 314 (344)
T ss_dssp CTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS-----
T ss_pred cccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC-----
Confidence 5566666666653 322 1110001124678888887764 432 222221 467899999966543
Q ss_pred cccCchHHHHHHHHHHh
Q 014100 401 CWEGNLNDTIKKLFNEM 417 (430)
Q Consensus 401 ~~~~~~~~~i~~~~~~~ 417 (430)
.-+....+.++.++...
T Consensus 315 ~~~~~~~~~l~~~~~~~ 331 (344)
T d2ca6a1 315 SEEDDVVDEIREVFSTR 331 (344)
T ss_dssp CTTSHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHc
Confidence 22333445566555543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.15 E-value=0.00051 Score=55.14 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=6.9
Q ss_pred HhhcCCCCEEEEecC
Q 014100 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~c 115 (430)
+..+++|+.|++++|
T Consensus 87 ~~~l~~L~~L~Ls~N 101 (162)
T d1koha1 87 VQKAPNLKILNLSGN 101 (162)
T ss_dssp HHHSTTCCCCCCTTS
T ss_pred HhhCCcccccccccC
Confidence 334444444444444
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0011 Score=61.90 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=65.9
Q ss_pred CCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCCccEeeccccccCCcCCCcccccccceeeccccccccccccC
Q 014100 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|++|++++ .+++...-..++..++++++|++++| .+... +...++.. ...+++|++|+++++ .+++....
T Consensus 2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~----~~~~l~~~-L~~~~~L~~LdLs~N-~i~~~~~~ 73 (460)
T d1z7xw1 2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC-GLTEA----RCKDISSA-LRVNPALAELNLRSN-ELGDVGVH 73 (460)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS-CCCHH----HHHHHHHH-HHTCTTCCEEECTTC-CCHHHHHH
T ss_pred CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCC-CCCHH----HHHHHHHH-HhcCCCCCEEECcCC-cCChHHHH
Confidence 3678888864 35655333445777888888888888 34321 11111111 256678888888875 34332100
Q ss_pred cc--cc-cCCCCccEEEEecCCCccccc----------CCcceEEEecCCCCC
Q 014100 159 TE--NI-IEMPELRYLAIENCPDMETFI----------SNSVVHVTTDNKEPE 198 (430)
Q Consensus 159 ~~--~~-~~l~~L~~L~l~~c~~l~~~~----------~~~L~~L~l~~~~~~ 198 (430)
.. .. ....+|++|++++|. +++.. .++|++|++++|.+.
T Consensus 74 ~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 74 CVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp HHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence 00 01 123579999999986 54322 457889999888754
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.30 E-value=0.001 Score=53.30 Aligned_cols=66 Identities=17% Similarity=-0.003 Sum_probs=46.2
Q ss_pred cCCCCcceeeccccccceeeccCCCCCCCCCCCccEEEeecCcCCCcCCchhHHhhcCCCCEEEEecCCC
Q 014100 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 48 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 117 (430)
..+++|++|+++++. ++.+.... .....+++|+.|+++++ .+.++.+...+ +..+|++|++++|+-
T Consensus 62 ~~~~~L~~L~Ls~N~-i~~l~~~~-~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~Npl 127 (162)
T d1koha1 62 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGNSL 127 (162)
T ss_dssp HHCTTCCCCCCCSSC-CCCCSGGG-THHHHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTSTT
T ss_pred HhCCCCCEeeCCCcc-ccCCchhH-HHHhhCCcccccccccC-ccccchhhhhh-hccccceeecCCCCc
Confidence 468999999999886 66532111 11146899999999997 56665554434 455799999999854
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.06 E-value=0.025 Score=44.95 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=10.0
Q ss_pred hhcCCCCEEEEecCCCc
Q 014100 102 RCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 102 ~~l~~L~~L~l~~c~~l 118 (430)
.+.++|++|+++++..+
T Consensus 12 ~n~~~L~~L~L~~~~~i 28 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRV 28 (167)
T ss_dssp TTCSSCCEEECTTCCSS
T ss_pred hCCCCCcEEEeCCCCCC
Confidence 34566777777655433
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.43 E-value=0.025 Score=44.97 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=29.5
Q ss_pred CCCcceeeccccccceee-ccCCCCCCCCCCCccEEEeecCcCCCcCC---chhHHhhcCCCCEEEEecC
Q 014100 50 FRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 50 ~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l~~c 115 (430)
.++|++|+++++..+.+- +..........++|++|++++| .+.... -...+...+.|++|++++|
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n 82 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 82 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh
Confidence 466666776655434310 0000000123455666666665 233211 1112444566666666666
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=91.25 E-value=0.031 Score=44.20 Aligned_cols=66 Identities=11% Similarity=0.129 Sum_probs=33.4
Q ss_pred CCCCcceeeccccccceee-ccCCCCCCCCCCCccEEEeecCcCCCcCCch---hHHhhcCCCCEEEEecC
Q 014100 49 GFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPA---NLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 49 ~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---~~~~~l~~L~~L~l~~c 115 (430)
..++|++|+++++..+.+- +..........++|++|++++| .+...... ..+...++++.+++++|
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc
Confidence 4577777777765545410 0000000134567777777776 33321111 12445666777777665
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=89.95 E-value=0.031 Score=44.26 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=28.9
Q ss_pred hcccccEEeeccCcccc----cccCCcccCCCCCEEEEccCC-Cccccccc---cccccccCccEEEEccc
Q 014100 249 AFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCH-GLINVLTL---STSESLVNLGRMKIADC 311 (430)
Q Consensus 249 ~l~~L~~L~l~~c~~l~----~l~~~~~~l~~L~~L~l~~c~-~l~~~~~~---~~~~~l~~L~~L~l~~c 311 (430)
..++++.+++++|..-. .+...+...++|+.+++..+. .+.+-... ..+...++|+.|++...
T Consensus 72 ~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 72 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred hcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 34555555555543221 122333445666666665432 23221100 12335667777777543
|