Citrus Sinensis ID: 014109

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

MTKIFIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSFLFFHFIFIANYITFVFLHLIDFREKQSLLTI

cHHHHHHHHHHHHHHHccccccccEEEEEccccccccccHHHHHHHHHHHHHHHcccHHHHcccEEEEEEcEEEEEEEEccHHHHHHHHccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEccccccccccccccEEEEEEccccHHHHccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHcccEEEEccccccccccccccccccEEEEEccccccccccEEEEccccEEEEEEEEEEcccccccccccHHHHcccEEEEEEccEEEEEEEEEccccccccccc

ccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHcccHHHHHHHEEEEEccccccEEEEccHHHHHHHHHcccEEEEEccccEEEEEEccccHHHccccccccccccccccccccccHccccccEEEEEEccccccccccccccccccccccccEEEcccccccccHHcHHHHHHHHHHccHHHHccccccccccccccccccHHHHHHHHHHccccccccEccccccccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEEEccccccccccEcccccEEEEEEccccccccccEEEEccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

MTKIFIFFLFLLTLLASSAQKQKQVYIVHfggsdngeKALHEIQETHHSYLLSVKDNEEEARASHLYSYkhsingfsavltpdEAARLSELEEVVsvypshpekyslqttrswefVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVdngvwpesksfsdegmgpvpkswkgicqtgvaFNSSLCNKKIIGARYYLKGFEqlygplnateddrsprdmdghgthtastvagrrvpnasafggfaegtasggaplARLAIYKAcwatpkaskaagntcFEADMLAAIDDAIRDGVHVLSIsigtnqpfafnrdgiAIGALNAVKHNILVACsagnsgpapsslsnlapwlitvgagsldrdfvgpvvlgTGMEIIVSNFIIILFTVQCINIVITFSFLFFHFIFIANYITFVFLHLIDfrekqsllti

MTKIFIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVsvypshpekysLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGThtastvagrrvpNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSFLFFHFIFIANYITFVFLHLIDFREKQSLLTI

MTKififflflltllASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINivitfsflffhfifiANYITFVFLHLIDFREKQSLLTI

**KIFIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSV*********SHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPE***********VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPL*********************************FGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAG********LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSFLFFHFIFIANYITFVFLHLIDFR********

MTKIFIFFLFLLTLLASSAQKQKQVYIVHF***************THHSY***************LYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAK**************KARYGQDVIVGLVDNGVWPESKSFSD*GMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSFLFFHFIFIANYITFVFLHLIDFREKQSLL*I

MTKIFIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEV******H***GQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP*NA*EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFTVQCINIVITFSFLFFHFIFIANYITFVFLHLIDFREKQSLLTI

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii

SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo

SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		430	2.2.26 [Sep-21-2011]
O65351		757	Subtilisin-like protease	no	no	0.788	0.447	0.478	2e-86
O64495		775	Subtilisin-like protease	no	no	0.806	0.447	0.441	6e-72
Q39547		731	Cucumisin OS=Cucumis melo	N/A	no	0.732	0.430	0.407	5e-65
Q9LLL8		749	Xylem serine proteinase 1	no	no	0.737	0.423	0.414	2e-62
P11018		319	Major intracellular serin	yes	no	0.325	0.438	0.294	2e-05
P29141		806	Minor extracellular prote	no	no	0.574	0.306	0.25	0.0002
P72186		1398	Pyrolysin OS=Pyrococcus f	no	no	0.348	0.107	0.272	0.0002

>sp\|O65351\|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1	Back alignment and function desciption

 Score =  320 bits (819), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/370 (47%), Positives = 231/370 (62%), Gaps = 31/370 (8%)

Query: 5   FIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEK-ALHEIQETHHSYLLSVKDNEEEARA 63
           F   L L     SS+   +  YIVH   S       LH     + S L S+ D+ E    
Sbjct: 11  FFLLLCLGFCHVSSSSSDQGTYIVHMAKSQMPSSFDLH--SNWYDSSLRSISDSAE---- 64

Query: 64  SHLYSYKHSINGFSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAK 123
             LY+Y+++I+GFS  LT +EA  L     V+SV P H  +Y L TTR+  F+GLDE   
Sbjct: 65  -LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEH--RYELHTTRTPLFLGLDEHT- 120

Query: 124 QNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAF 183
                     DL  +A    DV+VG++D GVWPESKS+SDEG GP+P SWKG C+ G  F
Sbjct: 121 ---------ADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNF 171

Query: 184 NSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAF 243
            +SLCN+K+IGAR++ +G+E   GP++ +++ RSPRD DGHGTHT+ST AG  V  AS  
Sbjct: 172 TASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLL 231

Query: 244 GGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 303
            G+A GTA G AP AR+A+YK CW            CF +D+LAAID AI D V+VLS+S
Sbjct: 232 -GYASGTARGMAPRARVAVYKVCWL---------GGCFSSDILAAIDKAIADNVNVLSMS 281

Query: 304 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRD 363
           +G      + RDG+AIGA  A++  ILV+CSAGN+GP+ SSLSN+APW+ TVGAG+LDRD
Sbjct: 282 LGGGMS-DYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRD 340

Query: 364 FVGPVVLGTG 373
           F    +LG G
Sbjct: 341 FPALAILGNG 350

Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp\|O64495\|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1	Back alignment and function description

>sp\|Q39547\|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1	Back alignment and function description

>sp\|Q9LLL8\|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1	Back alignment and function description

>sp\|P11018\|ISP1_BACSU Major intracellular serine protease OS=Bacillus subtilis (strain 168) GN=isp PE=1 SV=2	Back alignment and function description

>sp\|P29141\|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1	Back alignment and function description

>sp\|P72186\|PLS_PYRFU Pyrolysin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pls PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		430
359483572		777	PREDICTED: subtilisin-like protease-like	0.823	0.455	0.714	1e-148
225462458		778	PREDICTED: subtilisin-like protease-like	0.823	0.455	0.711	1e-148
255562582		776	Xylem serine proteinase 1 precursor, put	0.825	0.457	0.706	1e-146
224116492		775	predicted protein [Populus trichocarpa]	0.823	0.456	0.705	1e-146
147784535		860	hypothetical protein VITISV_036029 [Viti	0.823	0.411	0.664	1e-144
15242456		791	subtilase family protein [Arabidopsis th	0.834	0.453	0.676	1e-142
297791157		791	subtilase family protein [Arabidopsis ly	0.834	0.453	0.665	1e-140
449434276		791	PREDICTED: subtilisin-like protease-like	0.830	0.451	0.618	1e-131
356546528		789	PREDICTED: subtilisin-like protease-like	0.834	0.455	0.628	1e-126
297740588		740	unnamed protein product [Vitis vinifera]	0.734	0.427	0.633	1e-124

>gi\|359483572\|ref\|XP_002269555.2\| PREDICTED: subtilisin-like protease-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 255/357 (71%), Positives = 301/357 (84%), Gaps = 3/357 (0%)

Query: 22  QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
           +++VYIV+FG   +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20  ERKVYIVYFG-EHSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78

Query: 82  PDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLD-EVAKQNWNHFNMGQDLLSKAR 140
           P E  +LSE++EVVSV+PS  +K++L TTRSWEFVGL+ E+ ++        ++LL KAR
Sbjct: 79  PHEVTKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKELGREQLKKQKKTRNLLEKAR 138

Query: 141 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 200
           YG  +IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLK
Sbjct: 139 YGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSHCNRKLIGARYYLK 198

Query: 201 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 260
           G+E   GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G +A GTASGGAPLARL
Sbjct: 199 GYESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSALG-YAPGTASGGAPLARL 257

Query: 261 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIG 320
           AIYK CW  P  +K  GNTC+E DMLAAIDDAI DGVHVLSISIGT+QPF + +DGIAIG
Sbjct: 258 AIYKVCWPIPGQTKVKGNTCYEEDMLAAIDDAIADGVHVLSISIGTSQPFTYAKDGIAIG 317

Query: 321 ALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 377
           AL+A K+NI+VACSAGNSGPAPS+LSN APW+ITVGA S+DR FV P+VLG GM+++
Sbjct: 318 ALHATKNNIVVACSAGNSGPAPSTLSNPAPWIITVGASSIDRAFVTPLVLGNGMKLM 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225462458\|ref\|XP_002269375.1\| PREDICTED: subtilisin-like protease-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255562582\|ref\|XP_002522297.1\| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi\|223538550\|gb\|EEF40155.1\| Xylem serine proteinase 1 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224116492\|ref\|XP_002317314.1\| predicted protein [Populus trichocarpa] gi\|222860379\|gb\|EEE97926.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147784535\|emb\|CAN61728.1\| hypothetical protein VITISV_036029 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|15242456\|ref\|NP_199378.1\| subtilase family protein [Arabidopsis thaliana] gi\|9758669\|dbj\|BAB09208.1\| subtilisin-like protease [Arabidopsis thaliana] gi\|26451161\|dbj\|BAC42684.1\| putative subtilisin-like protease [Arabidopsis thaliana] gi\|28973549\|gb\|AAO64099.1\| putative subtilisin [Arabidopsis thaliana] gi\|332007897\|gb\|AED95280.1\| subtilase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297791157\|ref\|XP_002863463.1\| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi\|297309298\|gb\|EFH39722.1\| subtilase family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449434276\|ref\|XP_004134922.1\| PREDICTED: subtilisin-like protease-like [Cucumis sativus] gi\|449525046\|ref\|XP_004169531.1\| PREDICTED: subtilisin-like protease-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356546528\|ref\|XP_003541678.1\| PREDICTED: subtilisin-like protease-like [Glycine max]	Back alignment and taxonomy information

>gi\|297740588\|emb\|CBI30770.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		430
TAIR\|locus:2171938		791	AT5G45650 "AT5G45650" [Arabido	0.834	0.453	0.676	2.7e-132
TAIR\|locus:2172018		754	AT5G45640 "AT5G45640" [Arabido	0.688	0.392	0.622	3.1e-99
UNIPROTKB\|Q0J050		769	Os09g0530800 "Os09g0530800 pro	0.774	0.433	0.469	2e-79
TAIR\|locus:2158187		757	ARA12 [Arabidopsis thaliana (t	0.669	0.380	0.524	2.3e-78
TAIR\|locus:2127666		775	AT4G10540 "AT4G10540" [Arabido	0.795	0.441	0.445	1.9e-76
TAIR\|locus:2037915		773	AT1G32950 "AT1G32950" [Arabido	0.793	0.441	0.428	3.1e-74
TAIR\|locus:2037935		777	SBT3.3 "AT1G32960" [Arabidopsi	0.788	0.436	0.430	5.1e-74
TAIR\|locus:2127696		765	AT4G10510 "AT4G10510" [Arabido	0.779	0.437	0.434	8.4e-74
TAIR\|locus:2119028		766	AT4G21650 "AT4G21650" [Arabido	0.832	0.467	0.413	1.4e-73
TAIR\|locus:2037895		774	SBT3.5 "AT1G32940" [Arabidopsi	0.795	0.441	0.434	4.6e-73

TAIR\|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 251/371 (67%), Positives = 299/371 (80%)

Query:    17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGF 76
             +S  ++KQVYIV+FG    G+KA HEI+E HHSYL SVK++EE+ARAS LYSYKHSINGF
Sbjct:    18 ASCAEEKQVYIVYFG-EHKGDKAFHEIEEHHHSYLQSVKESEEDARASLLYSYKHSINGF 76

Query:    77 SAVLTPDEAARLSELEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVA-------KQNW--N 127
             +A LTPD+A++L +L EVVSV+ SHP KY   TTRSWEFVGL+E         ++N   +
Sbjct:    77 AAELTPDQASKLEKLAEVVSVFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADD 136

Query:   128 HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSL 187
              F +G++ L KA++G  +IVG++D+GVWPESKSF+D+GMGPVPKSWKGICQTGVAFNSS 
Sbjct:   137 RFRVGRNFLKKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSH 196

Query:   188 CNKKIIGARYYLKGFEQLYGPLNAT--EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 245
             CN+KIIGARYY+KG+E+ YG  NAT  +D  SPRD DGHG+HTAST  GRRV  ASA GG
Sbjct:   197 CNRKIIGARYYVKGYERYYGAFNATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGG 256

Query:   246 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 305
             FA+G+ASGGAPLARLAIYKACWA P A K  GN C E DMLAAIDDAI DGVHV+SISIG
Sbjct:   257 FAKGSASGGAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIG 316

Query:   306 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 365
             T +PF F +DGIA+GAL+AVK NI+VA SAGNSGP P +LSNLAPW+ITVGA +LDR FV
Sbjct:   317 TTEPFPFTQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFV 376

Query:   366 GPVVLGTGMEI 376
             G +VLG G  I
Sbjct:   377 GGLVLGNGYTI 387

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

TAIR\|locus:2172018 AT5G45640 "AT5G45640" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127666 AT4G10540 "AT4G10540" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037915 AT1G32950 "AT1G32950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037935 SBT3.3 "AT1G32960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2127696 AT4G10510 "AT4G10510" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2119028 AT4G21650 "AT4G21650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037895 SBT3.5 "AT1G32940" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		430
cd04852		307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	1e-118
cd07474		295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	7e-23
cd00306		241	cd00306, Peptidases_S8_S53, Peptidase domain in th	4e-16
pfam05922		76	pfam05922, Inhibitor_I9, Peptidase inhibitor I9	5e-16
cd07487		264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	2e-15
cd07477		229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	2e-12
cd04848		267	cd04848, Peptidases_S8_Autotransporter_serine_prot	7e-12
cd07473		259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	4e-11
cd07489		312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	3e-10
pfam00082		277	pfam00082, Peptidase_S8, Subtilase family	4e-10
cd07490		254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	6e-10
cd07475		346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	1e-09
TIGR03921		350	TIGR03921, T7SS_mycosin, type VII secretion-associ	2e-07
cd04077		255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	2e-07
cd07481		264	cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep	3e-07
COG1404		508	COG1404, AprE, Subtilisin-like serine proteases [P	6e-07
cd07476		267	cd07476, Peptidases_S8_thiazoline_oxidase_subtilis	5e-06
cd07484		260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	8e-06
cd04842		293	cd04842, Peptidases_S8_Kp43_protease, Peptidase S8	1e-05
cd07498		242	cd07498, Peptidases_S8_15, Peptidase S8 family dom	1e-05
cd07482		294	cd07482, Peptidases_S8_Lantibiotic_specific_protea	1e-05
cd07493		261	cd07493, Peptidases_S8_9, Peptidase S8 family doma	3e-05
cd07480		297	cd07480, Peptidases_S8_12, Peptidase S8 family dom	3e-05
cd07478		455	cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam	2e-04
cd05562		275	cd05562, Peptidases_S53_like, Peptidase domain in	0.001
cd07479		255	cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa	0.002
cd04857		412	cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_	0.004

>gnl\|CDD\|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3	Back alignment and domain information

 Score =  347 bits (893), Expect = e-118
 Identities = 134/265 (50%), Positives = 162/265 (61%), Gaps = 20/265 (7%)

Query: 105 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDE 164
           Y L TTRS +F+GL             G  LL  A  G+ +I+G++D G+WPE  SF+D 
Sbjct: 1   YQLHTTRSPDFLGLPGA---------WGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADV 51

Query: 165 GMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 224
           G GP P +W G C TG  FN   CN K+IGARY+  G++  YG  N+  + RSPRD DGH
Sbjct: 52  GGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDA-YGGFNSDGEYRSPRDYDGH 110

Query: 225 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 284
           GTHTAST AG  V NAS  GGFA GTASG AP AR+A+YK CW            CF +D
Sbjct: 111 GTHTASTAAGNVVVNAS-VGGFAFGTASGVAPRARIAVYKVCW--------PDGGCFGSD 161

Query: 285 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 344
           +LAAID AI DGV V+S SIG   P     D IAI  L+AV+  I VA SAGNSGP  S+
Sbjct: 162 ILAAIDQAIADGVDVISYSIGGGSPD-PYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220

Query: 345 LSNLAPWLITVGAGSLDRDFVGPVV 369
           + N+APW+ TV A +L  D   P V
Sbjct: 221 VPNVAPWVTTVAASTLKPDIAAPGV 245

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl\|CDD\|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>gnl\|CDD\|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	Back alignment and domain information

>gnl\|CDD\|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9	Back alignment and domain information

>gnl\|CDD\|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1	Back alignment and domain information

>gnl\|CDD\|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	Back alignment and domain information

>gnl\|CDD\|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	Back alignment and domain information

>gnl\|CDD\|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>gnl\|CDD\|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>gnl\|CDD\|215701 pfam00082, Peptidase_S8, Subtilase family	Back alignment and domain information

>gnl\|CDD\|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6	Back alignment and domain information

>gnl\|CDD\|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>gnl\|CDD\|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	Back alignment and domain information

>gnl\|CDD\|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins	Back alignment and domain information

>gnl\|CDD\|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins	Back alignment and domain information

>gnl\|CDD\|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases	Back alignment and domain information

>gnl\|CDD\|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	Back alignment and domain information

>gnl\|CDD\|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases	Back alignment and domain information

>gnl\|CDD\|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15	Back alignment and domain information

>gnl\|CDD\|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases	Back alignment and domain information

>gnl\|CDD\|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9	Back alignment and domain information

>gnl\|CDD\|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12	Back alignment and domain information

>gnl\|CDD\|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins	Back alignment and domain information

>gnl\|CDD\|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family	Back alignment and domain information

>gnl\|CDD\|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins	Back alignment and domain information

>gnl\|CDD\|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		430
KOG1153		501	consensus Subtilisin-related protease/Vacuolar pro	100.0
cd04852		307	Peptidases_S8_3 Peptidase S8 family domain, unchar	100.0
PTZ00262		639	subtilisin-like protease; Provisional	100.0
cd07479		255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	100.0
cd07476		267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	100.0
cd07497		311	Peptidases_S8_14 Peptidase S8 family domain, uncha	100.0
cd07483		291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	100.0
cd07485		273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	100.0
cd07491		247	Peptidases_S8_7 Peptidase S8 family domain, unchar	100.0
cd07484		260	Peptidases_S8_Thermitase_like Peptidase S8 family	100.0
cd07475		346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	100.0
cd07496		285	Peptidases_S8_13 Peptidase S8 family domain, uncha	100.0
cd05561		239	Peptidases_S8_4 Peptidase S8 family domain, unchar	100.0
cd04077		255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	100.0
cd07487		264	Peptidases_S8_1 Peptidase S8 family domain, unchar	100.0
cd07481		264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	100.0
cd07493		261	Peptidases_S8_9 Peptidase S8 family domain, unchar	99.98
cd07489		312	Peptidases_S8_5 Peptidase S8 family domain, unchar	99.98
cd07498		242	Peptidases_S8_15 Peptidase S8 family domain, uncha	99.98
cd05562		275	Peptidases_S53_like Peptidase domain in the S53 fa	99.97
cd07490		254	Peptidases_S8_6 Peptidase S8 family domain, unchar	99.97
cd07477		229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	99.97
cd04843		277	Peptidases_S8_11 Peptidase S8 family domain, uncha	99.97
cd04842		293	Peptidases_S8_Kp43_protease Peptidase S8 family do	99.97
cd07482		294	Peptidases_S8_Lantibiotic_specific_protease Peptid	99.97
cd07478		455	Peptidases_S8_CspA-like Peptidase S8 family domain	99.97
cd07473		259	Peptidases_S8_Subtilisin_like Peptidase S8 family	99.97
cd04847		291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	99.97
cd04857		412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	99.97
cd07474		295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	99.97
cd07480		297	Peptidases_S8_12 Peptidase S8 family domain, uncha	99.96
cd04059		297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	99.96
cd07494		298	Peptidases_S8_10 Peptidase S8 family domain, uncha	99.96
cd07492		222	Peptidases_S8_8 Peptidase S8 family domain, unchar	99.95
cd04848		267	Peptidases_S8_Autotransporter_serine_protease_like	99.95
KOG4266		1033	consensus Subtilisin kexin isozyme-1/site 1 protea	99.94
PF00082		282	Peptidase_S8: Subtilase family This is family S8 i	99.93
cd00306		241	Peptidases_S8_S53 Peptidase domain in the S8 and S	99.9
cd07488		247	Peptidases_S8_2 Peptidase S8 family domain, unchar	99.86
COG1404		508	AprE Subtilisin-like serine proteases [Posttransla	99.81
KOG1114		1304	consensus Tripeptidyl peptidase II [Posttranslatio	99.79
KOG3526		629	consensus Subtilisin-like proprotein convertase [P	99.7
cd04056		361	Peptidases_S53 Peptidase domain in the S53 family.	99.2
PF05922		82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	98.97
KOG3525		431	consensus Subtilisin-like proprotein convertase [P	97.76
COG4934		1174	Predicted protease [Posttranslational modification	96.64
KOG1114		1304	consensus Tripeptidyl peptidase II [Posttranslatio	83.3

>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=1.8e-40  Score=324.07  Aligned_cols=292  Identities=18%  Similarity=0.266  Sum_probs=226.4

Q ss_pred             hhhccCCeEEEEEeCCCCCCCcchhhhHHhHHHHHHhhcchhhhhcc--c----------------eEEEee---eeeee
Q 014109           17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARA--S----------------HLYSYK---HSING   75 (430)
Q Consensus        17 ~~~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~----------------i~~~~~---~~~~g   75 (430)
                      ......+.+|||.|++..     .......|.+++++..+.......  .                +...|.   .++++
T Consensus        74 ~i~~~~~~~YiV~f~~~~-----~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~  148 (501)
T KOG1153|consen   74 AIEEALPSRYIVVFKPDA-----SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRG  148 (501)
T ss_pred             hhhcccccceEEEeCCCc-----cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhc
Confidence            334567899999999554     456667777777776543222100  0                222232   26788


Q ss_pred             EEEEeCHHHHHHhhcCcCeEEEEecCCccccccc-----CCCccccccchhhhccccccc-cchhhhcccCCCCccEEEE
Q 014109           76 FSAVLTPDEAARLSELEEVVSVYPSHPEKYSLQT-----TRSWEFVGLDEVAKQNWNHFN-MGQDLLSKARYGQDVIVGL  149 (430)
Q Consensus        76 ~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~-----~~~~~~~gl~~~~~~~~~~~~-~~~~~~~~~~~G~gV~VaV  149 (430)
                      +...++.+.+..++++|-++.++++.  .+....     .+....|+|.++.++....+. .....++ -..|+||+.+|
T Consensus       149 y~~~ft~~~v~~i~~~p~~~~ve~~~--~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv  225 (501)
T KOG1153|consen  149 YTGYFTGESVCSIRSDPLIKAVEKDS--VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYV  225 (501)
T ss_pred             cccccccceeeeeccCcceeeccccc--ccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEE
Confidence            99999999999999999999999998  665543     445567899888655522111 1112333 44899999999


Q ss_pred             eecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 014109          150 VDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTA  229 (430)
Q Consensus       150 IDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVA  229 (430)
                      +||||++.||||.++.      .| |.|..                                  ......|++|||||||
T Consensus       226 ~DTGVni~H~dFegRa------~w-Ga~i~----------------------------------~~~~~~D~nGHGTH~A  264 (501)
T KOG1153|consen  226 LDTGVNIEHPDFEGRA------IW-GATIP----------------------------------PKDGDEDCNGHGTHVA  264 (501)
T ss_pred             ecccccccccccccce------ec-ccccC----------------------------------CCCcccccCCCcceee
Confidence            9999999999998663      23 11110                                  0124568999999999


Q ss_pred             ccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHC---------CCcEE
Q 014109          230 STVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---------GVHVL  300 (430)
Q Consensus       230 Giiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~---------g~~VI  300 (430)
                      |+|++++               .|||.+++|+.+||++++|        +++.+++++++||+++.         +..|.
T Consensus       265 G~I~sKt---------------~GvAK~s~lvaVKVl~~dG--------sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~  321 (501)
T KOG1153|consen  265 GLIGSKT---------------FGVAKNSNLVAVKVLRSDG--------SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVA  321 (501)
T ss_pred             eeeeccc---------------cccccccceEEEEEeccCC--------cEeHHHHHhHHHHHHHHhhhhhcccCCCeEE
Confidence            9999984               6999999999999999998        89999999999999986         57999


Q ss_pred             EeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC-CCCCCEEEEeccccCCCcccceEeCCCcEEEec
Q 014109          301 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVS  379 (430)
Q Consensus       301 n~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-~~~~~vitVgA~~~~~~~~~~s~~g~~~~~~~S  379 (430)
                      |||+|+     ...-+++.|+++|.+.||.+++||||+..++|..+ ++++++|||||++..           +.++.||
T Consensus       322 NlSlGg-----~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-----------D~iA~FS  385 (501)
T KOG1153|consen  322 NLSLGG-----FRSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-----------DTIAFFS  385 (501)
T ss_pred             EEecCC-----cccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc-----------cchhhhc
Confidence            999999     34466788889999999999999999999988776 678999999999986           8899999


Q ss_pred             ccceeeeeeeecceEEeehHHHH
Q 014109          380 NFIIILFTVQCINIVITFSFLFF  402 (430)
Q Consensus       380 n~G~~~~~~~~~d~~~~~~~~~~  402 (430)
                      |||      .|||++|||.-+.+
T Consensus       386 N~G------~CVdiFAPGv~IlS  402 (501)
T KOG1153|consen  386 NWG------KCVDIFAPGVNILS  402 (501)
T ss_pred             Ccc------ceeeeecCchhhhh
Confidence            999      99999999976544

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3	Back alignment and domain information

>PTZ00262 subtilisin-like protease; Provisional	Back alignment and domain information

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins	Back alignment and domain information

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases	Back alignment and domain information

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14	Back alignment and domain information

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins	Back alignment and domain information

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin	Back alignment and domain information

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7	Back alignment and domain information

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins	Back alignment and domain information

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13	Back alignment and domain information

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4	Back alignment and domain information

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins	Back alignment and domain information

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1	Back alignment and domain information

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins	Back alignment and domain information

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9	Back alignment and domain information

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15	Back alignment and domain information

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family	Back alignment and domain information

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6	Back alignment and domain information

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins	Back alignment and domain information

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11	Back alignment and domain information

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases	Back alignment and domain information

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases	Back alignment and domain information

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins	Back alignment and domain information

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12	Back alignment and domain information

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases	Back alignment and domain information

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10	Back alignment and domain information

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8	Back alignment and domain information

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases	Back alignment and domain information

>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification	Back alignment and domain information

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families	Back alignment and domain information

>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2	Back alignment and domain information

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd04056 Peptidases_S53 Peptidase domain in the S53 family	Back alignment and domain information

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively	Back alignment and domain information

>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		430
3vta_A		621	Crystal Structure Of Cucumisin, A Subtilisin-Like E		2e-54
3i6s_A		649	Crystal Structure Of The Plant Subtilisin-Like Prot		2e-52
3afg_A		539	Crystal Structure Of Pron-Tk-Sp From Thermococcus K		8e-06

>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621

Back alignment and structure

Iteration: 1

Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/268 (42%), Positives = 156/268 (58%), Gaps = 32/268 (11%) Query: 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 168 TTRSW+F+G + +++ +++VG++D G+WPES SF DEG P Sbjct: 1 TTRSWDFLGFPLTVPR-------------RSQVESNIVVGVLDTGIWPESPSFDDEGFSP 47 Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228 P WKG C+T N+ CN+KIIGAR Y G G +N PRD +GHGTHT Sbjct: 48 PPPKWKGTCETS---NNFRCNRKIIGARSYHIGRPISPGDVNG------PRDTNGHGTHT 98 Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288 AST AG V A+ +G GTA GG PLAR+A YK CW + C + D+LAA Sbjct: 99 ASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCW---------NDGCSDTDILAA 148 Query: 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348 DDAI DGV ++S+S+G P + D IAIG+ +AV+ IL + SAGN GP + ++L Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208 Query: 349 APWLITVGAGSLDRDFVGPVVLGTGMEI 376 +PWL++V A ++DR FV V +G G Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSF 236

PyMOL of 3vta

>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649

Back alignment and structure

>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		430
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	5e-99
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	3e-97
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	2e-72
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	2e-19
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	3e-19
4aks_A		360	PATG, thiazoline oxidase/subtilisin-like protease;	3e-18
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	4e-18
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	1e-16
3t41_A		471	Epidermin leader peptide processing serine protea;	2e-16
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	2e-16
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	3e-16
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	3e-16
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	3e-15
2z2z_A		395	TK-subtilisin precursor; thermococcus kodakaraensi	3e-15
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	1e-14
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	2e-14
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	2e-14
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	7e-14
2z30_A		320	TK-subtilisin; thermococcus kodakaraensis, hydrola	6e-13
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	2e-12
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	8e-12
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	1e-09
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	2e-09
3lpc_A		340	APRB2; protease, subtilase, virulence factor, hydr	2e-09
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	3e-09
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	2e-08
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	3e-07
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	3e-07

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649	Back alignment and structure

 Score =  308 bits (790), Expect = 5e-99
 Identities = 112/268 (41%), Positives = 154/268 (57%), Gaps = 24/268 (8%)

Query: 109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 168
           TT + +F+ L+               L   +  GQDVIV ++D+G+WPES SF D+GM  
Sbjct: 1   TTHTSDFLKLNP-----------SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPE 49

Query: 169 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 228
           +PK WKGIC+ G  FN+S+CN+K+IGA Y+ KG       +N      S RD DGHGTH 
Sbjct: 50  IPKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVN--ITMNSARDTDGHGTHC 107

Query: 229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 288
           AS  AG      S F G+A GTA G AP ARLA+YK  +             F +D++AA
Sbjct: 108 ASITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSF---------NEGTFTSDLIAA 157

Query: 289 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 348
           +D A+ DGV ++SIS G      +  D I+I +  A+   +LV+ SAGN GP   SL+N 
Sbjct: 158 MDQAVADGVDMISISYGYRFIPLYE-DAISIASFGAMMKGVLVSASAGNRGPGIGSLNNG 216

Query: 349 APWLITVGAGSLDRDFVGPVVLGTGMEI 376
           +PW++ V +G  DR F G + LG G++I
Sbjct: 217 SPWILCVASGHTDRTFAGTLTLGNGLKI 244

PyMOL of 3i6s

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539	Back alignment and structure

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354	Back alignment and structure

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434	Back alignment and structure

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327	Back alignment and structure

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284	Back alignment and structure

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		430
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	100.0
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	100.0
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	100.0
2z2z_A		395	TK-subtilisin precursor; thermococcus kodakaraensi	100.0
3t41_A		471	Epidermin leader peptide processing serine protea;	100.0
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	100.0
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	100.0
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	100.0
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	100.0
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	100.0
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	100.0
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	100.0
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	100.0
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	100.0
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	100.0
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	100.0
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	100.0
4h6x_A		357	Thiazoline oxidase/subtilisin-like protease; hydro	100.0
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	100.0
3zxy_A		282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	100.0
2z30_A		320	TK-subtilisin; thermococcus kodakaraensis, hydrola	100.0
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	100.0
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	100.0
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	100.0
3lpc_A		340	APRB2; protease, subtilase, virulence factor, hydr	100.0
4h6w_A		306	N-terminal cyanobactin protease; hydrolase; 2.45A	100.0
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	100.0
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	100.0
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	99.98
1p8j_A		471	Furin precursor; prohormone convertase, SPC1, PACE	99.97
2id4_A		503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.97
2oxa_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.97
3hjr_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.96
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	99.95
1t1e_A		552	Kumamolisin; proenzyme, prosubtilase, activation m	99.64
1ga6_A		372	Serine-carboxyl proteinase; serine-carboxyl protei	99.38
2w2n_P		114	Proprotein convertase subtilisin/kexin type 9; hyd	98.98
3cnq_P		80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	98.86
2qtw_A		124	Proprotein convertase subtilisin/kexin type 9 Pro;	98.73
1v5i_B		76	POIA1, IA-1=serine proteinase inhibitor; protease-	98.73
2z30_B		65	TK-subtilisin; thermococcus kodakaraensis, hydrola	97.62
3edy_A		544	Tripeptidyl-peptidase 1; protease, TPP1, sedolisin	97.56
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	90.34

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

Probab=100.00  E-value=2.9e-46  Score=399.52  Aligned_cols=241  Identities=46%  Similarity=0.804  Sum_probs=211.4

Q ss_pred             cCCCccccccchhhhccccccccchhhhcccCCCCccEEEEeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCC
Q 014109          109 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLC  188 (430)
Q Consensus       109 ~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~gV~VaVIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~  188 (430)
                      |+++|+++||+..     .      .+|..+.+|+||+|||||||||++||+|.+.++++++..|+|.|+.|.+|+...|
T Consensus         1 Tt~s~~flgl~~~-----~------~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~c   69 (649)
T 3i6s_A            1 TTHTSDFLKLNPS-----S------GLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMC   69 (649)
T ss_dssp             CCSHHHHTTCCSS-----S------SHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSC
T ss_pred             CCCChHHcCCCCc-----h------hhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCcccccccc
Confidence            5688999999742     2      6899999999999999999999999999999999999999999999999999999


Q ss_pred             CceeeeeEecccccccccCCCCCCCCCCCCCCCCCCCccccccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccC
Q 014109          189 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA  268 (430)
Q Consensus       189 ~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThVAGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~  268 (430)
                      |+|++++++|..++....  .+...+..++.|..||||||||||||+..++.+.. |.+.|.+.||||+|+|+++|+++.
T Consensus        70 N~kiig~~~f~~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~-G~~~g~~~GvAP~A~l~~~kv~~~  146 (649)
T 3i6s_A           70 NRKLIGANYFNKGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSFN  146 (649)
T ss_dssp             CSSEEEEEECCHHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEET-TEEEEEECCSSTTCEEEEEECEET
T ss_pred             ccceeeeEeccCcccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCcccc-ccccCceeEECCCCEEEEEeccCC
Confidence            999999999987765432  22234456788999999999999999976666655 556677899999999999999997


Q ss_pred             CCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCCCCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCC
Q 014109          269 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL  348 (430)
Q Consensus       269 ~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~  348 (430)
                      .         .+..+++++||+||+++|++|||||||.. ...+..+++.+++++|.++||+||+||||+|+...++++.
T Consensus       147 ~---------g~~~~~i~~Ai~~A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~  216 (649)
T 3i6s_A          147 E---------GTFTSDLIAAMDQAVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNG  216 (649)
T ss_dssp             T---------EECHHHHHHHHHHHHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCC
T ss_pred             C---------CCCHHHHHHHHHHHHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCC
Confidence            6         58899999999999999999999999984 5667789999999999999999999999999998899999


Q ss_pred             CCCEEEEeccccCCCcccceEeCCC
Q 014109          349 APWLITVGAGSLDRDFVGPVVLGTG  373 (430)
Q Consensus       349 ~~~vitVgA~~~~~~~~~~s~~g~~  373 (430)
                      +|++|+|||++.++.+.++..+|++
T Consensus       217 ap~vitVgAst~dr~f~~~~~lgng  241 (649)
T 3i6s_A          217 SPWILCVASGHTDRTFAGTLTLGNG  241 (649)
T ss_dssp             CTTSEEEEEEECSCEEEEEEEETTS
T ss_pred             CCceEEEeeeecccceeeEEEeCCC
Confidence            9999999999999888776666554

PyMOL of 3i6s

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}	Back alignment and structure

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A	Back alignment and structure

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}	Back alignment and structure

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*	Back alignment and structure

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A	Back alignment and structure

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A	Back alignment and structure

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A	Back alignment and structure

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A	Back alignment and structure

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1	Back alignment and structure

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*	Back alignment and structure

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}	Back alignment and structure

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}	Back alignment and structure

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A	Back alignment and structure

>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*	Back alignment and structure

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P	Back alignment and structure

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B	Back alignment and structure

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P	Back alignment and structure

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A	Back alignment and structure

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B	Back alignment and structure

>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*	Back alignment and structure

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		430
d1v6ca_		435	c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud	7e-12
d1r6va_		671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	4e-07
d1to2e_		281	c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie	5e-04
d1dbia_		280	c.41.1.1 (A:) Thermostable serine protease {Bacill	5e-04
d1gcia_		269	c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId:	0.003

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score = 64.7 bits (156), Expect = 7e-12
 Identities = 37/258 (14%), Positives = 75/258 (29%), Gaps = 58/258 (22%)

Query: 126 WNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNS 185
           W    +G  +LS ++   +  + ++D+G        +                       
Sbjct: 6   WGQTFVGATVLSDSQ-AGNRTICIIDSGYDRSHNDLNA---------------------- 42

Query: 186 SLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 245
                 + G               + T +   P + + HGTH A T+A            
Sbjct: 43  ----NNVTGTNN------------SGTGNWYQPGNNNAHGTHVAGTIAAIA--------- 77

Query: 246 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 305
                  G  P     I+            + +     D       A     +V+++S+G
Sbjct: 78  -NNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGA-----NVVTMSLG 131

Query: 306 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 365
            +      R+ +         + +L+  +AGN+G +  S       +++V A   + D  
Sbjct: 132 GSGSTTTERNALN----THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA 187

Query: 366 GPVVLGTGMEIIVSNFII 383
                   +EI      I
Sbjct: 188 AFSQYTDQVEISGPGEAI 205

PyMOL of d1v6ca_

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671	Back information, alignment and structure

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281	Back information, alignment and structure

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280	Back information, alignment and structure

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		430
d1r6va_		671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	100.0
d1dbia_		280	Thermostable serine protease {Bacillus sp., AK.1 [	100.0
d1thma_		279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	100.0
d1gcia_		269	Subtilisin {Bacillus lentus [TaxId: 1467]}	100.0
d1to2e_		281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	100.0
d1v6ca_		435	Alkaline serine protease Apa1 {Pseudoalteromonas s	100.0
d1r0re_		274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	100.0
d2pwaa1		279	Proteinase K {Fungus (Tritirachium album), strain	99.97
d2ixta1		309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	99.96
d1wmda2		318	Alkaline serine protease kp-43, N-terminal domain	99.93
d1p8ja2		334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	99.92
d2id4a2		339	Kexin, N-terminal domain {Baker's yeast (Saccharom	99.9
d1t1ga_		357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	99.71
d1ga6a_		369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	99.68
d1scjb_		71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	98.83
d1v5ib1		72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	98.68

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=100.00  E-value=1.3e-37  Score=332.87  Aligned_cols=282  Identities=19%  Similarity=0.120  Sum_probs=187.1

Q ss_pred             CCeEEEEEeCCCCCCCcchhhhHHhHHHHHHhhcchhhhhccceEEEeeeeeeeEEEEeCHH----HHHH--hhcCcCeE
Q 014109           22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPD----EAAR--LSELEEVV   95 (430)
Q Consensus        22 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~----~~~~--L~~~p~V~   95 (430)
                      .+.+|||.||+..           ...++++++       ..++.+++.. ++.+.++++..    ..+.  +..+|+|+
T Consensus        30 ~~~~~iV~~k~~~-----------~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~   90 (671)
T d1r6va_          30 TEGKILVGYNDRS-----------EVDKIVKAV-------NGKVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIR   90 (671)
T ss_dssp             CTTEEEEEESSHH-----------HHHHHHHHH-------TCEEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEE
T ss_pred             CCCeEEEEECCcc-----------CHHHHHHhc-------CCEEEEEecc-cceEEEEcCchhHHHHHHHHHHhcCCCce
Confidence            4789999998743           112222222       1244555543 56666776542    2233  34589999


Q ss_pred             EEEecCCcccccccC----CCc-----------------------cccccchhhhccccccccchhhhcccCCCCccEEE
Q 014109           96 SVYPSHPEKYSLQTT----RSW-----------------------EFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVG  148 (430)
Q Consensus        96 ~v~~~~~~~~~~~~~----~~~-----------------------~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~gV~Va  148 (430)
                      +|||+.  ..++...    ..+                       ..|+++.+   ..      .++|....+|+||+||
T Consensus        91 ~vep~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i---~~------~~a~~~~~tG~gV~Va  159 (671)
T d1r6va_          91 YVEPSY--KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI---GV------TQQLWEEASGTNIIVA  159 (671)
T ss_dssp             EEECCB--CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT---TC------CHHHHHHCSCTTCEEE
T ss_pred             EECcce--eEeeccccccCCCccccccccccccccccCcCccccccCcChhhc---Cc------cHHHHhcCCCCCCEEE
Confidence            999987  4443211    000                       11333322   11      1343345789999999


Q ss_pred             EeecCCCCCCcCccCCCCCCCCCCcccccccCCcccccCCCceeeeeEecccccccccCCCCCCCCCCCCCCCCCCCccc
Q 014109          149 LVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT  228 (430)
Q Consensus       149 VIDTGid~~Hpdf~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGThV  228 (430)
                      |||||||++||||.++.                           +..+++..+...        ....++.|..||||||
T Consensus       160 ViDtGvd~~Hpdl~~~~---------------------------~~~~~~~~~~~~--------~~~~~~~d~~gHGT~V  204 (671)
T d1r6va_         160 VVDTGVDGTHPDLEGQV---------------------------IAGYRPAFDEEL--------PAGTDSSYGGSAGTHV  204 (671)
T ss_dssp             EEESCCBTTSGGGTTTB---------------------------CCEEEGGGTEEE--------CTTCBCCTTCSHHHHH
T ss_pred             EEcCCcCCCChhhcCCc---------------------------ccCccccccCCC--------CCCCcCcccCCCCccc
Confidence            99999999999997541                           122222221111        1123456788999999


Q ss_pred             cccccccccCCCCCCCCCCCCcceeccCCceEeEeeeccCCCccCccCCCCCCHHHHHHHHHHHHHCCCcEEEeccCCCC
Q 014109          229 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQ  308 (430)
Q Consensus       229 AGiiag~~~~~~~~~gg~~~g~~~GVAp~A~l~~~kv~~~~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~G~~~  308 (430)
                      ||||+|.         +++.+ +.||||+|+|+++|++++....+. .+ ....+.+++||+||+++|++|||||||+..
T Consensus       205 AGiiaa~---------~~~~g-~~GvAp~a~l~~~rv~~~~~~~~~-~g-~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~  272 (671)
T d1r6va_         205 AGTIAAK---------KDGKG-IVGVAPGAKIMPIVIFDDPALVGG-NG-YVGDDYVAAGIIWATDHGAKVMNHSWGGWG  272 (671)
T ss_dssp             HHHHHCC---------CSSSS-CCCSCTTSEEEEEESBCCHHHHCT-TS-BCCHHHHHHHHHHHHHTTCSEEEECEEBSC
T ss_pred             cceeeee---------ccccc-eeeecCcceEEEEEecccccccCC-CC-cccHHHHHHHHHHHHhCCCcEEeccccccc
Confidence            9999997         33333 579999999999999975210000 00 567788999999999999999999999832


Q ss_pred             CCCCcccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCCEEEEeccccCCCcccceEeCCCcEEEecccceeeee
Q 014109          309 PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIVSNFIIILFT  387 (430)
Q Consensus       309 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~~~vitVgA~~~~~~~~~~s~~g~~~~~~~Sn~G~~~~~  387 (430)
                          ....+..++++|.++|+++|+||||++.+.. .+++.+|++|+|||++..+..        ...+.|||||     
T Consensus       273 ----~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~~--------~~~a~fS~~g-----  335 (671)
T d1r6va_         273 ----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGGT--------FRVAGFSSRS-----  335 (671)
T ss_dssp             ----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETTE--------EEECSSSCCC-----
T ss_pred             ----CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCCc--------ceeeeccCCC-----
Confidence                3355667778999999999999999997653 456788999999999976321        2456788888     


Q ss_pred             eeecceEEeeh
Q 014109          388 VQCINIVITFS  398 (430)
Q Consensus       388 ~~~~d~~~~~~  398 (430)
                       +++|+.+||.
T Consensus       336 -~~~dv~APG~  345 (671)
T d1r6va_         336 -DGVSVGAPGV  345 (671)
T ss_dssp             -TTEEEEEECS
T ss_pred             -CCceEEecCC
Confidence             5666666654

PyMOL of d1r6va_

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}	Back information, alignment and structure

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}	Back information, alignment and structure

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}	Back information, alignment and structure

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}	Back information, alignment and structure

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}	Back information, alignment and structure

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}	Back information, alignment and structure

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}	Back information, alignment and structure

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}	Back information, alignment and structure

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}	Back information, alignment and structure

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}	Back information, alignment and structure

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}	Back information, alignment and structure

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}	Back information, alignment and structure