Citrus Sinensis ID: 014130

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MGNEGLALTTTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGMATFPGEDAADEVVAGDDVGTERNAGERMRVEQDSQSINKEPLNINELPKDAQNDLLDCKRERTDGCPSLCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAETATMMATNSATTAAISALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKAA
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccHHcccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEEcEEcccccccccccccEEEEEccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccEccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEEEEEcccccccccHccccccccEEEEEccccccccccccccccccccEEEEcccccEEEccccEEEEEEEEEEEEccccccccccEEEEEEEEcccHHcccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHcccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgneglalttttpatpatpaaakkntaalapgfrfhptdEELVSYYLKRkvynrpfrfnaigevdiyknepwdladfswmktrdqewyffspldkkyvngarmnratrkgywkatgkdreIRRESQLIGMKKTlvfhsgrapdgqrtnwVMHEYRLVEEEFeqlgpglaSYVLCRVFhknnigppngnryapfveeewddgmatfpgedaadevvagddvgternagermrveqdsqsinkeplninelpkdAQNDLldckrertdgcpslcvlntqaplpllqykrrrqndsgsnrsngsdnssgagqdpsssttttAETATMMATNSATTAAISALLEFSLmesiepretscvptaapfeandfdsqmppDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKAA
Flexible Loop (DISEMBL)
mgneglalttttpatpatpAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFnaigevdiyknepWDLADFSWMKTRDQEWYffspldkkyvngarmnratrkgywkatgkdreirresqligmkktlvfhsgrapdgqrtNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGMATFPGEDAADevvagddvgternagermrveqdsqsinkeplninelpkdAQNDLLDCKRERTdgcpslcvlntqaplpllqykrrrqndsgsnrsngsdnssgagqdpssSTTTTAETATMMATNSATTAAISALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRidfltrenedlkrknkaa
Low Complexity Region (SEG)
MGNEGlalttttpatpatpaaakkntaalapGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGMATFPgedaadevvagddvgteRNAGERMRVEQDSQSINKEPLNINELPKDAQNDLLDCKRERTDGCPSLCVLNTQAPLPLLQYKrrrqndsgsnrsngsdnssgagqdPsssttttaetatmmatnsattaaisaLLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKAA
Disordered region (IsUnstruct)
****************************LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGM**************************************************************TDGCPSLCVLNTQAPLPLL**************************************************AISALLEFSLM*****************************CAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLT*************
Disordered Region (DISOPRED)
*******************************GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVE***********SYVLCRVFH******************************************************************************************************************************************************************************************************LIK**KN***************LMSAQAMINILHSRIDFLTRENE*********
Disordered Region (DISEMBL)
*********TTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGMATFPGEDAADEVVAGDDVGTERN************SINKEPLNINELPKDAQNDLLDCKRERTDGCPSLCVLNTQAPLPLLQYKRRR******************************ETATMMATNSATTAAISALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTREN**********
Disordered Region (DISPRO)
****************************LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNN***************************************************************************************PSL****TQAPLPL************************************************TTAAISALLEFSLMESIE*******PTAAPFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNEGLALTTTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGMATFPGEDAADEVVAGDDVGTERNAGERMRVEQDSQSINKEPLNINELPKDAQNDLLDCKRERTDGCPSLCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAETATMMATNSATTAAISALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLxxxxxxxxxxxxxxxxxxxxxLMSAQAMxxxxxxxxxxxxxxxxxxxxxNKAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	430	2.2.26 [Sep-21-2011]
Q84K00	567	NAC domain-containing pro	no	no	0.453	0.343	0.634	2e-72
Q7GCL7	489	NAC domain-containing pro	no	no	0.374	0.329	0.527	9e-47
Q9FLJ2	336	NAC domain-containing pro	no	no	0.353	0.452	0.582	2e-46
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.362	0.457	0.535	1e-44
Q9FWX2	395	NAC domain-containing pro	no	no	0.351	0.382	0.532	4e-44
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.355	0.501	0.535	2e-43
Q93VY3	297	NAC domain-containing pro	no	no	0.353	0.511	0.5	1e-41
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.351	0.402	0.553	4e-41
Q5CD17	396	NAC domain-containing pro	no	no	0.344	0.373	0.517	6e-41
Q9MA17	371	Protein SOMBRERO OS=Arabi	no	no	0.376	0.436	0.508	2e-40

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score =  273 bits (697), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 154/197 (78%), Gaps = 2/197 (1%)

Query: 22  AKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMK 81
            + +  +LAPGFRFHPTDEELV YYLKRKV N+PF+F+AI   DIYK+EPWDL D S +K
Sbjct: 2   GRGSVTSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLK 61

Query: 82  TRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRA 141
           +RD EWYFFS LDKKY NG++ NRAT KGYWK TGKDREIR  S+++GMKKTLV+H GRA
Sbjct: 62  SRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRA 121

Query: 142 PDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRY-APFVEEEW-D 199
           P G+RTNWVMHEYRL +E+ ++ G    +YVLCR+F K+  GP NG +Y AP++EEEW +
Sbjct: 122 PRGERTNWVMHEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWEE 181

Query: 200 DGMATFPGEDAADEVVA 216
           DGM   P +DA  E +A
Sbjct: 182 DGMTYVPAQDAFSEGLA 198

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score =  188 bits (477), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 85/161 (52%), Positives = 110/161 (68%)

Query: 28  ALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEW 87
            L PGF FHP D EL+S+YLK+K++ +   +  I EVDIYK+EPWDL     + T+D +W
Sbjct: 8   VLPPGFGFHPKDTELISHYLKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCDVPTQDNKW 67

Query: 88  YFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRT 147
           +FF+  D+KY NG+R NRAT  GYWK+TGKDR I+   Q IG KKTLVFH GR P G+RT
Sbjct: 68  HFFAARDRKYPNGSRSNRATVAGYWKSTGKDRAIKMGKQTIGTKKTLVFHEGRPPTGRRT 127

Query: 148 NWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGN 188
            W+MHEY + E E +       +YVLCR+  +N+  P NGN
Sbjct: 128 EWIMHEYYIDERECQACPDMKDAYVLCRITKRNDWIPGNGN 168

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/158 (58%), Positives = 111/158 (70%), Gaps = 6/158 (3%)

Query: 29  LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWM-KTRDQEW 87
           L PGFRFHPTDEEL+++YL +KV +  F   AIGEVD+ K+EPW+L    WM K  ++EW
Sbjct: 16  LPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELP---WMAKMGEKEW 72

Query: 88  YFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRT 147
           YFF   D+KY  G R NRAT  GYWKATGKD+EI R   L+GMKKTLVF+ GRAP GQ+T
Sbjct: 73  YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQKT 132

Query: 148 NWVMHEYRLVEEEFEQLGPGLAS--YVLCRVFHKNNIG 183
           NWVMHEYRL  +      P  A   +V+CRVF K+  G
Sbjct: 133 NWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGG 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 27  AALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQ- 85
             + PGFRFHPTDEEL+ YYLK+K+  + F    I EVD+ K EPWDL +   + +  Q 
Sbjct: 7   GGVPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQN 66

Query: 86  EWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQ 145
           EWYFFS  D+KY  G+R NRAT  G+WKATG+D+ IR   + IGM+KTLVF+ GRAP GQ
Sbjct: 67  EWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQ 126

Query: 146 RTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNI 182
           +T+W+MHEYRL + +  Q  P    +V+CRVF K N+
Sbjct: 127 KTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMKKNL 163

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  179 bits (454), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 109/154 (70%), Gaps = 3/154 (1%)

Query: 27  AALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQ- 85
           + + PGFRFHPTDEELV YYL++KV ++    + I ++D+YK EPWDL +   +   +Q 
Sbjct: 5   SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQS 64

Query: 86  EWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQ 145
           +WYFFS  DKKY  G R NRAT+ G+WKATG+D+ I     LIGM+KTLVF+ GRAP+GQ
Sbjct: 65  DWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQ 124

Query: 146 RTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHK 179
           +++W+MHEYRL  E  E   P    +V+CRVF K
Sbjct: 125 KSDWIMHEYRL--ETDENGTPQEEGWVVCRVFKK 156

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/157 (53%), Positives = 108/157 (68%), Gaps = 4/157 (2%)

Query: 27  AALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQ- 85
             + PGFRFHPTDEEL+ YYLK+K+    F    I EVD+ K EPWDL D   + +  Q 
Sbjct: 6   GGVPPGFRFHPTDEELLHYYLKKKISYEKFEMEVIKEVDLNKIEPWDLQDRCKIGSTPQN 65

Query: 86  EWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQ 145
           EWYFFS  D+KY  G+R NRAT  G+WKATG+D+ IR   + IGM+KTLVF+ GRAP GQ
Sbjct: 66  EWYFFSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQ 125

Query: 146 RTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNI 182
           +T+W+MHEYR+ + E +   P    +V+CRVF K N+
Sbjct: 126 KTDWIMHEYRIEDTEDD---PCEDGWVVCRVFKKKNL 159

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score =  171 bits (433), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 2/154 (1%)

Query: 28  ALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEW 87
           +L PGFRF+PTDEEL+  YL RKV    F    IG++D+YK +PWDL   +     ++EW
Sbjct: 13  SLPPGFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDIDLYKFDPWDLPSKALFG--EKEW 70

Query: 88  YFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRT 147
           YFFSP D+KY NG+R NR    GYWKATG D+ I  + + +G+KK LVF++G+AP G +T
Sbjct: 71  YFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFYAGKAPKGTKT 130

Query: 148 NWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNN 181
           NW+MHEYRL+E         L  +VLCR++ K +
Sbjct: 131 NWIMHEYRLIEHSRSHGSSKLDDWVLCRIYKKTS 164

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  169 bits (427), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 108/159 (67%), Gaps = 8/159 (5%)

Query: 29  LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWY 88
           L PGFRFHPTDEEL+++YL RKV +  F   AI EVD+ K EPW L   +  K  ++EWY
Sbjct: 17  LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRA--KMGEKEWY 74

Query: 89  FFSPLDKKYVNGARMNRATRKGYWKATGKDREI--RRESQLIGMKKTLVFHSGRAPDGQR 146
           FFS  D+KY  G R NRAT  GYWKATGKDREI   +   L+GMKKTLVF+ GRAP G++
Sbjct: 75  FFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEK 134

Query: 147 TNWVMHEYRLVEEEFEQLGPGLAS---YVLCRVFHKNNI 182
           +NWVMHEYRL E +F       +S   +V+ RVF K  +
Sbjct: 135 SNWVMHEYRL-EGKFSYHFISRSSKDEWVISRVFQKTTL 172

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  168 bits (426), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 89/172 (51%), Positives = 106/172 (61%), Gaps = 24/172 (13%)

Query: 29  LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWY 88
           L PGFRFHPTD E++  YL +K+ N  F    IGEVD+ K EPWDL   S  K  ++EWY
Sbjct: 19  LPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLP--SKAKMGEKEWY 76

Query: 89  FFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRE----------------SQLIGMKK 132
           FFS  D KY  G R NRAT++GYWKATGKDREI R+                 QL+GMKK
Sbjct: 77  FFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKK 136

Query: 133 TLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLA-----SYVLCRVFHK 179
           TLVF+ GRAP G +TNWVMHE+RL         P L       +V+C+VFHK
Sbjct: 137 TLVFYMGRAPKGTKTNWVMHEFRL-HANLHNHHPNLRLNPKDEWVVCKVFHK 187

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MA17|SMB_ARATH Protein SOMBRERO OS=Arabidopsis thaliana GN=SMB PE=1 SV=1

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/167 (50%), Positives = 111/167 (66%), Gaps = 5/167 (2%)

Query: 17  ATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLAD 76
           ++   A     ++ PGFRFHPT+EEL+ YYLK+KV   P   + I EVD+ K EPW+L +
Sbjct: 5   SSSTVAGGGQLSVPPGFRFHPTEEELLYYYLKKKVSYEPIDLDVIREVDLNKLEPWELKE 64

Query: 77  FSWMKTRDQ-EWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIR-RESQLIGMKKTL 134
              + +  Q EWYFFS  DKKY  G R NRAT  G+WKATG+D+ I    S+ IG++KTL
Sbjct: 65  KCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKSIHLNSSKKIGLRKTL 124

Query: 135 VFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNN 181
           VF++GRAP GQ+T W+MHEYRL + E E    G   +V+CRVF K N
Sbjct: 125 VFYTGRAPHGQKTEWIMHEYRLDDSENEIQEDG---WVVCRVFKKKN 168

Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
224109864	440	NAC domain protein, IPR003441 [Populus t	0.967	0.945	0.688	1e-154
356576366	465	PREDICTED: uncharacterized protein LOC10	0.925	0.855	0.555	1e-120
356535507	465	PREDICTED: uncharacterized protein LOC10	0.916	0.847	0.540	1e-118
42572353	446	NAC domain containing protein 50 [Arabid	0.932	0.899	0.544	1e-115
449449379	450	PREDICTED: uncharacterized protein LOC10	0.981	0.937	0.515	1e-115
255583756	389	hypothetical protein RCOM_0351490 [Ricin	0.802	0.886	0.591	1e-115
18398891	447	NAC domain containing protein 50 [Arabid	0.932	0.897	0.543	1e-114
297829586	454	ANAC050 [Arabidopsis lyrata subsp. lyrat	0.972	0.920	0.529	1e-114
297829588	451	ANAC051/ANAC052 [Arabidopsis lyrata subs	0.944	0.900	0.527	1e-113
30681347	451	NAC domain containing protein 52 [Arabid	0.932	0.889	0.524	1e-111

>gi|224109864|ref|XP_002315336.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|118483306|gb|ABK93555.1| unknown [Populus trichocarpa] gi|222864376|gb|EEF01507.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 299/434 (68%), Positives = 332/434 (76%), Gaps = 18/434 (4%)

Query: 6   LALTTTTPAT----PATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAI 61
           LALTT  P        TP + K  T ALAPGFRFHPTDEELV YYLKRKV N+PFRFNAI
Sbjct: 14  LALTTPAPPASAPAKTTPVSTK--TTALAPGFRFHPTDEELVIYYLKRKVSNKPFRFNAI 71

Query: 62  GEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREI 121
            EVDIYKNEPWDLAD S +K+RDQEWYFFSPLDKKY NGARMNRAT KGYWKATGKDREI
Sbjct: 72  SEVDIYKNEPWDLADKSRLKSRDQEWYFFSPLDKKYGNGARMNRATGKGYWKATGKDREI 131

Query: 122 RRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGP-GLASYVLCRVFHKN 180
           RRE QL+ MKKTLVFHSGRAP G RTNWVMHEYRL++EE E+ G   + SYVLCRVFHKN
Sbjct: 132 RRECQLLAMKKTLVFHSGRAPGGLRTNWVMHEYRLIDEELERTGAMQIDSYVLCRVFHKN 191

Query: 181 NIGPPNGNRYAPFVEEEWDD-GMATFPGEDAADEVVAGDDVGTERNAGERMRVEQDSQSI 239
           NIGPP GNRYAPF+EEEWDD G A  PGEDAADEVV   D G     GE  R EQDS SI
Sbjct: 192 NIGPPTGNRYAPFIEEEWDDRGAALIPGEDAADEVVVTYDTG-----GEMHRTEQDSHSI 246

Query: 240 NKEPLNINELPKDAQNDLLDCKRERTDGCPSLCVLNTQAPLPLLQYKRRRQ-NDSGSNRS 298
           NK PL I E+P D+QN L  CK E  + CP LCVLNT+AP PLLQYKRR+  N++GSNRS
Sbjct: 247 NKSPLGITEVPGDSQNALPVCKTESVEDCPPLCVLNTEAPFPLLQYKRRKHNNETGSNRS 306

Query: 299 NGSDNSSGAGQDPSSSTTTTAETA---TMMATNSATTAAISALLEFSLMESIEPRETSCV 355
           NGS+NS+   QDP SSTTTTA T     MMAT SATT AISALLEFSLME +EP+E   V
Sbjct: 307 NGSENSTRTSQDPCSSTTTTAATTSAEMMMATTSATTTAISALLEFSLMEPLEPKENPRV 366

Query: 356 PTAAPFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDF 415
           P  A  +A   DS M P C K I +L++++R++ VER TLKL++MSA AMINIL SR+DF
Sbjct: 367 PPPA-LDAASLDSSMSPSCRKFINDLQSEIRKISVERETLKLEMMSAHAMINILQSRVDF 425

Query: 416 LTRENEDLKRKNKA 429
           L +ENEDLKR   A
Sbjct: 426 LNKENEDLKRSVHA 439

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576366|ref|XP_003556303.1| PREDICTED: uncharacterized protein LOC100808783 [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/427 (55%), Positives = 288/427 (67%), Gaps = 29/427 (6%)

Query: 28  ALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEW 87
           +LAPGFRFHPTDEELV YYLKRKV  + FRF+AI EVDIY++EPWDLAD S +KTRDQEW
Sbjct: 33  SLAPGFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEW 92

Query: 88  YFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRT 147
           YFFS LDKKY NG RMNRAT KGYWKATG DR +R + + +G+KKTLVFHSGRAPDG+RT
Sbjct: 93  YFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVRHDQRTVGLKKTLVFHSGRAPDGKRT 152

Query: 148 NWVMHEYRLVEEEFEQLGPGLA----SYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGMA 203
           NWVMHEYRLVEEE E+ G G      +YVLCRVFHKNNIGPPNG RYAPF+EEEWDD   
Sbjct: 153 NWVMHEYRLVEEELERAGTGSCQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDASG 212

Query: 204 TFPGEDAADEVVAGDDVGTERNAG-----ERMRVEQDSQSINKEPLNINELPKDAQNDLL 258
             PG D  D          E N G      R  V QD+QS NK P ++N+LP + QN L 
Sbjct: 213 MVPGADHVDNRSFAHQPRVEGNGGVLCAEGRNGVVQDTQSFNKAPFDVNKLPIETQNLLA 272

Query: 259 DCKRERTDGCPS-------------LCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSS 305
            CKRE     PS                  T  P P  Q  +RR+++  SN SN S +S 
Sbjct: 273 VCKRESMAEYPSPEKDDNNCKHMDDYPSPQTDNPKPFSQIYKRRRHNLNSNNSNVSGDSV 332

Query: 306 GAGQDPSSSTTTTAETATM------MATNSATTAA-ISALLEFSLMESIEPRETSCVPTA 358
              QDP SST TTA TA         ATN+A     +SAL+EFSL+ES+E ++      A
Sbjct: 333 RTSQDPCSSTITTAATALPTATVAGTATNTAPKKHFLSALVEFSLLESLESKDNLASIKA 392

Query: 359 APFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTR 418
             F+  + +S MPP CAK IK+++++++++ VE+ T++ ++MSAQAMINIL SRID L++
Sbjct: 393 PDFDTENLESSMPPSCAKFIKQMQSEMQKLSVEKETIRFEMMSAQAMINILQSRIDVLSK 452

Query: 419 ENEDLKR 425
           ENEDLKR
Sbjct: 453 ENEDLKR 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535507|ref|XP_003536286.1| PREDICTED: uncharacterized protein LOC100782028 [Glycine max]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/424 (54%), Positives = 282/424 (66%), Gaps = 30/424 (7%)

Query: 32  GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
           GFRFHPTDEELV YYLKRKV  + FRF+AI EVDIY++EPWDLAD S +KTRDQEWYFFS
Sbjct: 36  GFRFHPTDEELVIYYLKRKVSGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFS 95

Query: 92  PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
            LDKKY NG RMNRAT KGYWKATG DR +R + + +G+KKTLVFHSGRAPDG+RTNWVM
Sbjct: 96  ALDKKYGNGGRMNRATSKGYWKATGNDRPVRHDQRTVGLKKTLVFHSGRAPDGKRTNWVM 155

Query: 152 HEYRLVEEEFEQLGPGLA----SYVLCRVFHKNNIGPPNGNRYAPFVEEEWDDGMATFPG 207
           HEYRLVEEE E+ G G +    +YVLCRVFHKNNIGPPNG RYAPF+EEEWDD     PG
Sbjct: 156 HEYRLVEEELERAGSGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDASGMVPG 215

Query: 208 EDAADEVVAGDDVGTERNAG-----ERMRVEQDSQSINKEPLNINELPKDAQNDLLDCKR 262
            D  D          E  +G      R    QD+QS NK P ++N+LP + QN L  CKR
Sbjct: 216 ADPGDNRSFAHQPHVEGKSGVLCAEGRNGALQDTQSFNKAPFDVNKLPIETQNLLAVCKR 275

Query: 263 ERTDGCPS-------------LCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQ 309
           E     PS                  T  P P  Q  +RR+++  SN S+ S +S    Q
Sbjct: 276 ESMAEYPSPEKDDNNCKHMDDYPSPQTDNPKPFSQIYKRRRHNLNSNNSHVSGDSIRTSQ 335

Query: 310 DPSSSTTTTAETATMMATNSATTAA--------ISALLEFSLMESIEPRETSCVPTAAPF 361
           DP SST TTA TA      +A TA         +SAL+EFSL+ES+E +++        F
Sbjct: 336 DPCSSTITTAATALPTTNAAAGTATNTAPKKHFLSALVEFSLLESLESKDSLASIKTPDF 395

Query: 362 EANDFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENE 421
           +  + +S MPP CAK IKE+K++++++ VE+ T++ ++MS QAMINIL SR+D L++ENE
Sbjct: 396 DVENLESSMPPSCAKFIKEMKSEMQKLSVEKETMRFEMMSTQAMINILQSRVDVLSKENE 455

Query: 422 DLKR 425
           DLKR
Sbjct: 456 DLKR 459

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572353|ref|NP_974272.1| NAC domain containing protein 50 [Arabidopsis thaliana] gi|332641392|gb|AEE74913.1| NAC domain containing protein 50 [Arabidopsis thaliana]

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 257/472 (54%), Positives = 309/472 (65%), Gaps = 71/472 (15%)

Query: 1   MGNEGLALTTTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNA 60
           MG E LA+ ++ P+  AT  +   +  +LAPGFRFHPTDEELVSYYLKRKV  +P RF+A
Sbjct: 1   MGRESLAVVSSPPS--ATAPSTAVSATSLAPGFRFHPTDEELVSYYLKRKVLGKPVRFDA 58

Query: 61  IGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDRE 120
           IGEVDIYK+EPWDLA FS +KTRDQEWYFFS LDKKY NGARMNRAT KGYWKATGKDRE
Sbjct: 59  IGEVDIYKHEPWDLAVFSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDRE 118

Query: 121 IRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKN 180
           IRR+ QL+GMKKTLVFHSGRAPDG RTNWVMHEYRLVE E E  G  L +YVLCRVFHKN
Sbjct: 119 IRRDIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETETNGSLLDAYVLCRVFHKN 178

Query: 181 NIGPPNGNRYAPFVEEEW-DDGMATFPGEDAADEVVAGDDVGTERNAGERMRVEQDSQSI 239
           NIGPP+GNRYAPF+EEEW D G A  PG D    V A      + N   +M  +Q+  S 
Sbjct: 179 NIGPPSGNRYAPFMEEEWADGGGALIPGIDVRVRVEAL----PQANGNNQM--DQEMHSA 232

Query: 240 NKEPLNINELPKDA----------------------------QNDLLDCKRERTDG---C 268
           +K+ +NINELP+DA                            + D    KRE  +     
Sbjct: 233 SKDLININELPRDATPMDIEPNQQNHHESAFKPQESNNHSGYEEDEDTLKREHAEEDERP 292

Query: 269 PSLCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAETATMM--- 325
           PSLC+LN +APLPLLQYKRRRQN+S +N S  +       QD  SST TT +  T +   
Sbjct: 293 PSLCILNKEAPLPLLQYKRRRQNESNNNSSRNT-------QDHCSSTITTVDNTTTLISS 345

Query: 326 ATNSATTAAISALLEFSLM------ESIEPRETS-CVPTAAPFEANDFDSQMPPDCAKLI 378
           +  +AT  AISALLEFSLM      E+ +  ETS   P A+P E               +
Sbjct: 346 SAAAATNTAISALLEFSLMGISDKKENQQKEETSPPSPIASPEEK--------------V 391

Query: 379 KELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKAA 430
            +L+ +V ++ VER T KL++MSA+AMI+IL SRID L +ENE+LK+KN + 
Sbjct: 392 NDLQKEVHQMSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKKNASG 443

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449379|ref|XP_004142442.1| PREDICTED: uncharacterized protein LOC101210923 [Cucumis sativus] gi|449523587|ref|XP_004168805.1| PREDICTED: uncharacterized LOC101210923 [Cucumis sativus]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/448 (51%), Positives = 294/448 (65%), Gaps = 26/448 (5%)

Query: 1   MGNEGLALTT-TTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFN 59
           MG+E L L+T   P  P           ALAPGFRFHPTDEELV YYLKRKV  + FRFN
Sbjct: 1   MGSETLTLSTPLPPTKPIAAPPPAAAPTALAPGFRFHPTDEELVIYYLKRKVCGKSFRFN 60

Query: 60  AIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDR 119
           AI EVDIYK+EPWDLA  S +K+RDQE+YFFS LDKKY NGARMNRAT +GYWKATG DR
Sbjct: 61  AISEVDIYKSEPWDLAGKSRLKSRDQEYYFFSVLDKKYGNGARMNRATSQGYWKATGNDR 120

Query: 120 EIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLAS----YVLCR 175
            +R +S+ +G+KKTLVFHSGRAPDG+RTNWVMHEYRLV+EE E+ G G  S    YVLCR
Sbjct: 121 PVRHDSRNVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELEKAGAGTGSSQDAYVLCR 180

Query: 176 VFHKNNIGPPNGNRYAPFVEEEWDD-GMATFPGEDAADEVVAGDDVGTERNA-------- 226
           VFHK+NIGPPNG+RYAPF+EEEWDD G    PGE+ AD  +A  D  +ERN+        
Sbjct: 181 VFHKSNIGPPNGHRYAPFIEEEWDDAGSVLIPGEEIADGKIASHDAQSERNSNSVCAAEG 240

Query: 227 ------GERMRVEQD-SQSINKEPLNINELPKDAQNDLLDCKRERTDGCPSLCVLNTQAP 279
                 GE     QD +  INK+P+  N+ P+ + N L  CK E+ +      ++    P
Sbjct: 241 SNDGACGEGKDGMQDKAHFINKDPVISNDPPRSSHNFLFVCKSEKLEDYTPPSIIANPKP 300

Query: 280 LPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAETATMMATNSATTAA---IS 336
            PL++YKRRRQ+D  S  S GS+NSS + ++PS S T  A    +  T+  T      +S
Sbjct: 301 FPLMKYKRRRQSDLTSELSKGSENSSMSNEEPSLSETAIASQTDITTTSVTTPTTKNFLS 360

Query: 337 ALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLIKELKNQVREVVVERATLK 396
            L+E+SL+ES EP++          E +D  S + P   K I++L++++ +  +ER TLK
Sbjct: 361 TLVEYSLLESAEPKDAPA--PPPALETSDLSSSVHPSILKFIQDLQHEIHKTSMERETLK 418

Query: 397 LDLMSAQAMINILHSRIDFLTRENEDLK 424
            +L+SA+AMI+IL SRI  L +E  DLK
Sbjct: 419 FELLSARAMISILQSRIVVLNKEINDLK 446

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583756|ref|XP_002532631.1| hypothetical protein RCOM_0351490 [Ricinus communis] gi|223527651|gb|EEF29762.1| hypothetical protein RCOM_0351490 [Ricinus communis]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/421 (59%), Positives = 281/421 (66%), Gaps = 76/421 (18%)

Query: 19  PAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFS 78
           PA A K T ALAPGFRFHPTDEELVSYYLKRKV N+P RFNAI EVDIYKNEPW+LA   
Sbjct: 25  PAGAVK-TTALAPGFRFHPTDEELVSYYLKRKVSNKPVRFNAISEVDIYKNEPWELA--- 80

Query: 79  WMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHS 138
                                                              MKKTLVFHS
Sbjct: 81  --------------------------------------------------AMKKTLVFHS 90

Query: 139 GRAPDGQRTNWVMHEYRLVEEEFEQLGP-GLASYVLCRVFHKNNIGPPNGNRYAPFVEEE 197
           GRAP GQRTNWVMHEYRLVEEE ++LG     SYVLCRVFHKNNIGPPNGNRYAPF+EEE
Sbjct: 91  GRAPGGQRTNWVMHEYRLVEEELDRLGALHTDSYVLCRVFHKNNIGPPNGNRYAPFLEEE 150

Query: 198 WDDG-MATFPGEDAADEVVAGDDVGTERNAGERMRVEQDSQSINKEPLNINELPKDAQ-- 254
           WDDG  A  PGEDAADEVV G D  TE N     RVEQD+ SI ++PLNINELPKD+Q  
Sbjct: 151 WDDGETALVPGEDAADEVVVGHD-NTEMN-----RVEQDNHSIRRDPLNINELPKDSQTV 204

Query: 255 -----NDLLDCKRERTDGCPSLCVLNTQAPLPLLQYKRRRQNDSG-SNRSNGSDNSSGAG 308
                +DL  CK ER D CP  CVLNT+A  PLLQYKRR+ ND   SNRSN S+NS+   
Sbjct: 205 DEFRRHDLPVCKTERMDDCPP-CVLNTEASFPLLQYKRRKHNDEMVSNRSNASENSTRTT 263

Query: 309 QDPS----SSTTTTAETATMMATNSATTAAISALLEFSLMESIEPRETSCVPTAAPFEAN 364
           QDP     S+  TT  T T M T +ATT A+SALLEFSLMESIEP+E+  VPT   F++ 
Sbjct: 264 QDPCSSTTSTGATTTTTDTTMTTATATTTAVSALLEFSLMESIEPKESPRVPTLK-FDSF 322

Query: 365 DFDSQMPPDCAKLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLK 424
             DS +PP C K I +L++++ ++ VER TLKL++MSAQAMINIL SRIDFL +ENEDLK
Sbjct: 323 GLDSTVPPSCMKFINDLQSEIHKISVERETLKLEMMSAQAMINILQSRIDFLNKENEDLK 382

Query: 425 R 425
           R
Sbjct: 383 R 383

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398891|ref|NP_566374.1| NAC domain containing protein 50 [Arabidopsis thaliana] gi|12322797|gb|AAG51394.1|AC011560_26 unknown protein; 82947-80576 [Arabidopsis thaliana] gi|8567777|gb|AAF76349.1| unknown protein [Arabidopsis thaliana] gi|16604701|gb|AAL24143.1| unknown protein [Arabidopsis thaliana] gi|20258971|gb|AAM14201.1| unknown protein [Arabidopsis thaliana] gi|332641391|gb|AEE74912.1| NAC domain containing protein 50 [Arabidopsis thaliana]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 257/473 (54%), Positives = 309/473 (65%), Gaps = 72/473 (15%)

Query: 1   MGNEGLALTTTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNA 60
           MG E LA+ ++ P+  AT  +   +  +LAPGFRFHPTDEELVSYYLKRKV  +P RF+A
Sbjct: 1   MGRESLAVVSSPPS--ATAPSTAVSATSLAPGFRFHPTDEELVSYYLKRKVLGKPVRFDA 58

Query: 61  IGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDRE 120
           IGEVDIYK+EPWDLA FS +KTRDQEWYFFS LDKKY NGARMNRAT KGYWKATGKDRE
Sbjct: 59  IGEVDIYKHEPWDLAVFSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDRE 118

Query: 121 IRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLA-SYVLCRVFHK 179
           IRR+ QL+GMKKTLVFHSGRAPDG RTNWVMHEYRLVE E E  G  L  +YVLCRVFHK
Sbjct: 119 IRRDIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETETNGSLLQDAYVLCRVFHK 178

Query: 180 NNIGPPNGNRYAPFVEEEW-DDGMATFPGEDAADEVVAGDDVGTERNAGERMRVEQDSQS 238
           NNIGPP+GNRYAPF+EEEW D G A  PG D    V A      + N   +M  +Q+  S
Sbjct: 179 NNIGPPSGNRYAPFMEEEWADGGGALIPGIDVRVRVEAL----PQANGNNQM--DQEMHS 232

Query: 239 INKEPLNINELPKDA----------------------------QNDLLDCKRERTDG--- 267
            +K+ +NINELP+DA                            + D    KRE  +    
Sbjct: 233 ASKDLININELPRDATPMDIEPNQQNHHESAFKPQESNNHSGYEEDEDTLKREHAEEDER 292

Query: 268 CPSLCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAETATMM-- 325
            PSLC+LN +APLPLLQYKRRRQN+S +N S  +       QD  SST TT +  T +  
Sbjct: 293 PPSLCILNKEAPLPLLQYKRRRQNESNNNSSRNT-------QDHCSSTITTVDNTTTLIS 345

Query: 326 -ATNSATTAAISALLEFSLM------ESIEPRETS-CVPTAAPFEANDFDSQMPPDCAKL 377
            +  +AT  AISALLEFSLM      E+ +  ETS   P A+P E               
Sbjct: 346 SSAAAATNTAISALLEFSLMGISDKKENQQKEETSPPSPIASPEEK-------------- 391

Query: 378 IKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKAA 430
           + +L+ +V ++ VER T KL++MSA+AMI+IL SRID L +ENE+LK+KN + 
Sbjct: 392 VNDLQKEVHQMSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKKNASG 444

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829586|ref|XP_002882675.1| ANAC050 [Arabidopsis lyrata subsp. lyrata] gi|297328515|gb|EFH58934.1| ANAC050 [Arabidopsis lyrata subsp. lyrata]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/463 (52%), Positives = 303/463 (65%), Gaps = 45/463 (9%)

Query: 1   MGNEGLALTTTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNA 60
           MG E LA+ ++ P+  AT  +   +  +LAPGFRFHPTDEELVSYYLKRKV  +P RF+A
Sbjct: 1   MGRESLAVVSSPPS--ATAPSTAVSATSLAPGFRFHPTDEELVSYYLKRKVLGKPVRFDA 58

Query: 61  IGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDRE 120
           IGEVDIYK+EPWDLA FS +KTRDQEWYFFS LDKKY NGARMNRAT KGYWKATGKDRE
Sbjct: 59  IGEVDIYKHEPWDLAVFSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDRE 118

Query: 121 IRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLA-SYVLCRVFHK 179
           IRR+ QL+GMKKTLVFHSGRAPDG RTNWVMHEYRLVE E E  G  L  +YVLCRVFHK
Sbjct: 119 IRRDIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETETNGSLLQDAYVLCRVFHK 178

Query: 180 NNIGPPNGNRYAPFVEEEW-DDGMATFPGEDAADEVVAGDDVGTERNAGERMRVEQDSQS 238
           NNIGPP+GNRYAPF+EEEW D G A  PG D    V A      + N   +M  +Q+  S
Sbjct: 179 NNIGPPSGNRYAPFMEEEWADGGGALIPGIDVRVRVEAL----PQANGNNQM--DQEIHS 232

Query: 239 INKEPLNINELPKDA----------------------------QNDLLDCKRERTDG--- 267
            +K+ +NINELP+DA                            + D    KRE  +    
Sbjct: 233 TSKDLININELPRDATPMDIEPNQQNHHESAFKPQENNNHSGYEEDEETLKREHAEEDER 292

Query: 268 CPSLCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAETATMMAT 327
            P L +LN +APLPLLQYKRRRQN+S +N S  + +   +     ++   T    +  + 
Sbjct: 293 PPPLSILNKEAPLPLLQYKRRRQNESNNNSSRSTQDHCSSST--ITTVDNTTTLISSSSA 350

Query: 328 NSATTAAISALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLIKELKNQVRE 387
            +AT  AISALLEFSLM   E +E    P +   EA+       P+  + + +L+ ++ +
Sbjct: 351 AAATNTAISALLEFSLMGISEKKENQQQPLSPHKEASPPSPIASPE--EKVDDLQKEIHQ 408

Query: 388 VVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKNKAA 430
           + VER T KL++MSA+AMI+IL SRID L +ENE+LK+KN + 
Sbjct: 409 MSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKKNASG 451

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829588|ref|XP_002882676.1| ANAC051/ANAC052 [Arabidopsis lyrata subsp. lyrata] gi|297328516|gb|EFH58935.1| ANAC051/ANAC052 [Arabidopsis lyrata subsp. lyrata]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/468 (52%), Positives = 304/468 (64%), Gaps = 62/468 (13%)

Query: 1   MGNEGLALTTTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNA 60
           MG E LA+ T  P+  A          +LAPGFRFHPTDEELVSYYLKRKV  +P RF+A
Sbjct: 1   MGRESLAVVTAPPSATAP--GTATAATSLAPGFRFHPTDEELVSYYLKRKVLGKPVRFDA 58

Query: 61  IGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDRE 120
           IGEVDIYK+EPWDLA FS +KTRDQEWYF+S LDKKY NGARMNRAT +GYWKATGKDRE
Sbjct: 59  IGEVDIYKHEPWDLAVFSRLKTRDQEWYFYSALDKKYGNGARMNRATNRGYWKATGKDRE 118

Query: 121 IRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLA-SYVLCRVFHK 179
           IRR+ QL+GMKKTLVFHSGRAPDG RTNWVMHEYRLVE E E+ G  +  +YVLCRVFHK
Sbjct: 119 IRRDIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETEKNGNLVQDAYVLCRVFHK 178

Query: 180 NNIGPPNGNRYAPFVEEEW-DDGMATFPGEDAA-----DEVVAGDDVGTERNAGERMRVE 233
           NNIGPP+GNRYAPF+EEEW DD  A  PG D         V  G++           +++
Sbjct: 179 NNIGPPSGNRYAPFMEEEWADDAGALIPGIDVKLRLEPPPVANGNN-----------QMD 227

Query: 234 QDSQSINKEPLNINELPKDA-------------QNDL---------------LDCKRERT 265
           Q+ QS +K  +NINE P++              +N+L                  KRE T
Sbjct: 228 QEIQSGSKSLININEPPRETAPMDIEPNQQNHHENELKPQEHNNNNNYDENEETLKREHT 287

Query: 266 D----GCPSLCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAET 321
           +      P +CVLN +APLPLLQYKRRRQN+S +N S  +       QD  SSTTTT + 
Sbjct: 288 EEDERPAPPVCVLNKEAPLPLLQYKRRRQNESNNNSSRNT-------QDHCSSTTTTVDN 340

Query: 322 ATMMATNSA--TTAAISALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCAKLIK 379
            T + ++SA  T  AISALLEFSLM   + +E    P     E +   + +     K + 
Sbjct: 341 TTTLISSSAAATNTAISALLEFSLMGISDKKEKPQQPLRPHKEPSPPQTPLASPEEK-VN 399

Query: 380 ELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427
           +L+ ++ ++ VER T KL++MSA+AMI+IL SRID L +ENE+LK+ N
Sbjct: 400 DLQKEIHQMSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKNN 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30681347|ref|NP_850554.1| NAC domain containing protein 52 [Arabidopsis thaliana] gi|12322794|gb|AAG51391.1|AC011560_23 unknown protein; 79282-76749 [Arabidopsis thaliana] gi|8567778|gb|AAF76350.1| unknown protein [Arabidopsis thaliana] gi|332641395|gb|AEE74916.1| NAC domain containing protein 52 [Arabidopsis thaliana]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/473 (52%), Positives = 305/473 (64%), Gaps = 72/473 (15%)

Query: 1   MGNEGLALTTTTPATPATPAAAKKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNA 60
           MG E +A+ T  P+  A P  A   T+ LAPGFRFHPTDEELVSYYLKRKV  +P RF+A
Sbjct: 1   MGRESVAVVTAPPSATA-PGTASVATS-LAPGFRFHPTDEELVSYYLKRKVLGQPVRFDA 58

Query: 61  IGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDRE 120
           IGEVDIYK+EPWDLA FS +KTRDQEWYF+S LDKKY NGARMNRAT +GYWKATGKDRE
Sbjct: 59  IGEVDIYKHEPWDLAVFSRLKTRDQEWYFYSALDKKYGNGARMNRATNRGYWKATGKDRE 118

Query: 121 IRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLA-SYVLCRVFHK 179
           IRR+  L+GMKKTLVFHSGRAPDG RTNWVMHEYRLVE E E+ G  +  +YVLCRVFHK
Sbjct: 119 IRRDILLLGMKKTLVFHSGRAPDGLRTNWVMHEYRLVEYETEKNGNLVQDAYVLCRVFHK 178

Query: 180 NNIGPPNGNRYAPFVEEEW-DDGMATFPGEDAA-----DEVVAGDDVGTERNAGERMRVE 233
           NNIGPP+GNRYAPF+EEEW DD  A  PG D         V  G+D           +++
Sbjct: 179 NNIGPPSGNRYAPFMEEEWADDEGALIPGIDVKLRLEPPPVANGND-----------QMD 227

Query: 234 QDSQSINKEPLNINELPKDA-------------QNDL---------------LDCKRERT 265
           Q+ QS +K  +NINE P++              +NDL                  KRE+ 
Sbjct: 228 QEIQSASKSLININEPPRETAPLDIESDQQNHHENDLKPEEHNNNNNYDENEETLKREQM 287

Query: 266 D----GCPSLCVLNTQAPLPLLQYKRRRQNDSGSNRSNGSDNSSGAGQDPSSSTTTTAET 321
           +        +CVLN +APLPLLQYKRRRQ++S +N S  +       QD  SSTTTT + 
Sbjct: 288 EEEERPPRPVCVLNKEAPLPLLQYKRRRQSESNNNSSRNT-------QDHCSSTTTTVDN 340

Query: 322 ATMMATNSA--TTAAISALLEFSLMESIEPRETSCVPTAAPFEANDFDSQMPPDCA---- 375
            T + ++SA  T  AISALLEFSLM   + +E    P     E       +PP       
Sbjct: 341 TTTLISSSAAATNTAISALLEFSLMGISDKKEKPQQPLRPHKEP------LPPQTPLASP 394

Query: 376 -KLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLKRKN 427
            + + +L+ ++ ++ VER T KL++MSA+AMI+IL SRID L +ENE+LK+ N
Sbjct: 395 EEKVNDLQKEIHQMSVERETFKLEMMSAEAMISILQSRIDALRQENEELKKNN 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2075855	526	NAC050 "NAC domain containing	0.290	0.237	0.833	1.6e-99
TAIR|locus:2075835	451	NAC052 "NAC domain containing	0.5	0.476	0.681	1.6e-94
TAIR|locus:2184342	567	NAC2 "NAC domain containing pr	0.406	0.308	0.666	1.4e-64
TAIR|locus:2075815	549	NAC053 "AT3G10500" [Arabidopsi	0.406	0.318	0.640	2.3e-62
TAIR|locus:2179944	395	NAC077 "NAC domain containing	0.351	0.382	0.519	2.9e-53
TAIR|locus:2037925	528	NAC13 "NAC domain protein 13"	0.388	0.316	0.568	1.2e-49
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.351	0.613	0.615	3.2e-49
TAIR|locus:2009096	557	NAC017 "NAC domain containing	0.393	0.303	0.552	4.1e-49
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.376	0.538	0.578	1.8e-48
TAIR|locus:2114678	469	NAC062 "NAC domain containing	0.351	0.321	0.552	6e-48

TAIR|locus:2075855 NAC050 "NAC domain containing protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 1.6e-99, Sum P(4) = 1.6e-99
 Identities = 105/126 (83%), Positives = 111/126 (88%)

Query:    77 FSWMKTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVF 136
             FS +KTRDQEWYFFS LDKKY NGARMNRAT KGYWKATGKDREIRR+ QL+GMKKTLVF
Sbjct:   108 FSKLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIRRDIQLLGMKKTLVF 167

Query:   137 HSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLA-SYVLCRVFHKNNIGPPNGNRYAPFVE 195
             HSGRAPDG RTNWVMHEYRLVE E E  G  L  +YVLCRVFHKNNIGPP+GNRYAPF+E
Sbjct:   168 HSGRAPDGLRTNWVMHEYRLVEYETETNGSLLQDAYVLCRVFHKNNIGPPSGNRYAPFME 227

Query:   196 EEWDDG 201
             EEW DG
Sbjct:   228 EEWADG 233

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2075835 NAC052 "NAC domain containing protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 771 (276.5 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
 Identities = 152/223 (68%), Positives = 173/223 (77%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             GFRFHPTDEELVSYYLKRKV  +P RF+AIGEVDIYK+EPWDLA FS +KTRDQEWYF+S
Sbjct:    30 GFRFHPTDEELVSYYLKRKVLGQPVRFDAIGEVDIYKHEPWDLAVFSRLKTRDQEWYFYS 89

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
              LDKKY NGARMNRAT +GYWKATGKDREIRR+  L+GMKKTLVFHSGRAPDG RTNWVM
Sbjct:    90 ALDKKYGNGARMNRATNRGYWKATGKDREIRRDILLLGMKKTLVFHSGRAPDGLRTNWVM 149

Query:   152 HEYRLVEEEFEQLGPGLA-SYVLCRVFHKNNIGPPNGNRYAPFVEEEW-DDGMATFPXXX 209
             HEYRLVE E E+ G  +  +YVLCRVFHKNNIGPP+GNRYAPF+EEEW DD  A  P   
Sbjct:   150 HEYRLVEYETEKNGNLVQDAYVLCRVFHKNNIGPPSGNRYAPFMEEEWADDEGALIPGID 209

Query:   210 XXXXXXXXXXXXXXRNAGERMRVEQDSQSINKEPLNINELPKD 252
                            N  ++M  +Q+ QS +K  +NINE P++
Sbjct:   210 VKLRLEPPPVA----NGNDQM--DQEIQSASKSLININEPPRE 246

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2184342 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 118/177 (66%), Positives = 142/177 (80%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             GFRFHPTDEELV YYLKRKV N+PF+F+AI   DIYK+EPWDL D S +K+RD EWYFFS
Sbjct:    12 GFRFHPTDEELVRYYLKRKVCNKPFKFDAISVTDIYKSEPWDLPDKSKLKSRDLEWYFFS 71

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
              LDKKY NG++ NRAT KGYWK TGKDREIR  S+++GMKKTLV+H GRAP G+RTNWVM
Sbjct:    72 MLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGERTNWVM 131

Query:   152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRY-APFVEEEWD-DGMATFP 206
             HEYRL +E+ ++ G    +YVLCR+F K+  GP NG +Y AP++EEEW+ DGM   P
Sbjct:   132 HEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGPKNGEQYGAPYLEEEWEEDGMTYVP 188

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0009962 "regulation of flavonoid biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2075815 NAC053 "AT3G10500" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 114/178 (64%), Positives = 140/178 (78%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             GFRFHPTDEELV YYLKRK+ N+PF+F+AI   D+YK+EPWDL D S +K+RD EWYFFS
Sbjct:    12 GFRFHPTDEELVRYYLKRKICNKPFKFDAISVTDVYKSEPWDLPDKSRLKSRDLEWYFFS 71

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
              LDKKY NG++ NRAT  GYWK TGKDREI   S+++GMKKTLV+H GRAP G+RTNWVM
Sbjct:    72 MLDKKYRNGSKTNRATEMGYWKTTGKDREILNGSKVVGMKKTLVYHKGRAPRGERTNWVM 131

Query:   152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRY-APFVEEEWD--DGMATFP 206
             HEYRLV+++ ++ G    ++VLCR+F K+  GP NG +Y APFVEEEW+  D M   P
Sbjct:   132 HEYRLVDQDLDKTGVHQDAFVLCRIFQKSGSGPKNGEQYGAPFVEEEWEEEDDMTFVP 189

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009819 "drought recovery" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2179944 NAC077 "NAC domain containing protein 77" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 2.9e-53, Sum P(3) = 2.9e-53
 Identities = 95/183 (51%), Positives = 120/183 (65%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLA----------DFSW-M 80
             GFRFHP+DEEL+SYYLK+KV  +P R++ IGEVDI K EPWDLA          DF + +
Sbjct:    31 GFRFHPSDEELISYYLKKKVQGKPMRYDEIGEVDICKLEPWDLAVIIFLCFLALDFRYVL 90

Query:    81 KTRDQEWYFFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQ---LIGMKKTLVFH 137
             KTRD+EW+FFS LDKK   G  M+RAT++GYWK TG D +IR+       IG  KTLVFH
Sbjct:    91 KTRDKEWFFFSALDKKTRTGTSMSRATKQGYWKVTGTDGKIRQGGDGKVTIGTMKTLVFH 150

Query:   138 SGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEE 197
              GR+P+G  T+WVM+EY L + +      G+          +NN     G+RYAPF+EEE
Sbjct:   151 RGRSPNGLGTDWVMNEYHLAKND-----EGVP---------QNN----TGSRYAPFLEEE 192

Query:   198 WDD 200
             WDD
Sbjct:   193 WDD 195

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2037925 NAC13 "NAC domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 99/174 (56%), Positives = 129/174 (74%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             GFRFHPTDEELV YYLKRK+  +  R  AIGE D+YK +P +L + +  KTRD++W+FFS
Sbjct:    13 GFRFHPTDEELVVYYLKRKIRRKKLRVEAIGETDVYKFDPEELPEKALYKTRDRQWFFFS 72

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
               D+K+  G+R +RAT +GYWKATGKDR I  +S+ +G KKTLVFH GRAP+G+RTNWVM
Sbjct:    73 LRDRKH--GSRSSRATERGYWKATGKDRVIHCDSRPVGEKKTLVFHRGRAPNGERTNWVM 130

Query:   152 HEYRLVEEEFEQLGPGLA--SYVLCRVFHKNNIGPPNGNRY-APFVEEEW--DD 200
             HEY L +EE ++ G      +YVL +++ K+  GP NG +Y APF+EEEW  DD
Sbjct:   131 HEYTLHKEELKRCGGEDVKDAYVLYKIYKKSGSGPKNGEQYGAPFIEEEWAEDD 184

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010114 "response to red light" evidence=IEP

GO:0010224 "response to UV-B" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 93/151 (61%), Positives = 114/151 (75%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             GFRFHPTDEELV+YYLKRK+  +    + I EVD+YK EPWDLA+ S++ +RD EWYFF 
Sbjct:     9 GFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWDLAEKSFLPSRDPEWYFFG 68

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
             P D+KY NG R NRATR GYWK+TGKDR +  +S+ IGMKKTLV++ GRAP G RT+WVM
Sbjct:    69 PRDRKYPNGFRTNRATRGGYWKSTGKDRRVTSQSRAIGMKKTLVYYKGRAPQGIRTDWVM 128

Query:   152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNNI 182
             HEYRL +++ +       SY LCRVF KN I
Sbjct:   129 HEYRLDDKDCDDPSSLQDSYALCRVFKKNGI 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2009096 NAC017 "NAC domain containing protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 94/170 (55%), Positives = 119/170 (70%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             GFRFHPTDEELV YYLKRK+  +  R N IG VD+YK +P +L   S +KT D++W++F+
Sbjct:    19 GFRFHPTDEELVMYYLKRKICRKRLRVNVIGVVDVYKMDPEELPGQSMLKTGDRQWFYFT 78

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
             P  +KY N AR NR T  GYWKATGKDR I   S+ +G+KKTLVF+ GRAP G+RT+WVM
Sbjct:    79 PRSRKYPNAARSNRGTENGYWKATGKDRVIEYNSRSVGLKKTLVFYRGRAPSGERTDWVM 138

Query:   152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRY-APFVEEEWDD 200
             HEY + E+E  +       Y L ++F K+  GP NG +Y APF EEEW D
Sbjct:   139 HEYTMDEDELGRCKNPQEYYALYKLFKKSGAGPKNGEQYGAPFQEEEWVD 188

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 96/166 (57%), Positives = 109/166 (65%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             GFRFHPTDEELV+YYL RKV  +      I EVD+YK EPWDL + S++   D EWYF+S
Sbjct:     9 GFRFHPTDEELVAYYLDRKVNGQAIELEIIPEVDLYKCEPWDLPEKSFLPGNDMEWYFYS 68

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
               DKKY NG+R NRATR GYWKATGKDR +  +   +GMKKTLV++ GRAP G RTNWVM
Sbjct:    69 TRDKKYPNGSRTNRATRAGYWKATGKDRTVESKKMKMGMKKTLVYYRGRAPHGLRTNWVM 128

Query:   152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGPPNGNRYAPFVEEE 197
             HEYRL       L     SY LCRVF K NI  P         EEE
Sbjct:   129 HEYRLTHAPSSSLKE---SYALCRVF-KKNIQIPKRKGEEEEAEEE 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2114678 NAC062 "NAC domain containing protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
 Identities = 84/152 (55%), Positives = 112/152 (73%)

Query:    32 GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
             G RF PTDEEL+ YYL+RK+        AI E+DI K EPWDL DFS +KT+D EW +F 
Sbjct:    16 GLRFRPTDEELIRYYLRRKINGHDDDVKAIREIDICKWEPWDLPDFSVIKTKDSEWLYFC 75

Query:    92 PLDKKYVNGARMNRATRKGYWKATGKDREIRR-ESQLIGMKKTLVFHSGRAPDGQRTNWV 150
             PLD+KY +G+R NRAT  GYWKATGKDR+I+  ++ +IG+K+TLVFH+GRAP G RTNW+
Sbjct:    76 PLDRKYPSGSRQNRATVAGYWKATGKDRKIKSGKTNIIGVKRTLVFHAGRAPRGTRTNWI 135

Query:   151 MHEYRLVEEEFEQLGPGLASYVLCRVFHKNNI 182
             +HEYR  E++     PG + +V+C++F K  +
Sbjct:   136 IHEYRATEDDLSGTNPGQSPFVICKLFKKEEL 167

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0070417 "cellular response to cold" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	430
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	6e-77

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  234 bits (600), Expect = 6e-77
 Identities = 85/130 (65%), Positives = 100/130 (76%), Gaps = 3/130 (2%)

Query: 29  LAPGFRFHPTDEELVSYYLKRKVYNRPFR-FNAIGEVDIYKNEPWDLADFSWMKTRDQEW 87
           L PGFRFHPTDEELV YYLKRKV  +P    + I EVDIYK EPWDL D    K  D+EW
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPD-GKAKGGDREW 59

Query: 88  YFFSPLDKKYVNGARMNRATRKGYWKATGKDREIR-RESQLIGMKKTLVFHSGRAPDGQR 146
           YFFSP D+KY NG+R NRAT  GYWKATGKD+ +  +  +++GMKKTLVF+ GRAP G++
Sbjct: 60  YFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 147 TNWVMHEYRL 156
           T+WVMHEYRL
Sbjct: 120 TDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.73

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=4.5e-42  Score=299.92  Aligned_cols=127  Identities=55%  Similarity=1.071  Sum_probs=96.9

Q ss_pred             CCCCceeCCChHHHHHHHHhhhhcCCCCCC-CceeeccCCCCCCccccccccccCCCCceeeccCCcccccCCCcccccc
Q 014130           29 LAPGFRFHPTDEELVSYYLKRKVYNRPFRF-NAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGARMNRAT  107 (430)
Q Consensus        29 LPPGfRF~PTDEELV~~YL~rKi~G~plp~-~~I~evDVY~~ePWdLp~~~~~k~~d~eWYFFs~r~kK~~~G~R~nRat  107 (430)
                      |||||||+|||+|||.+||++|+.|.+++. .+|+++|||.+|||+|+..  .+.++.+||||+++++++.+|.|.+|++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~--~~~~~~~~yFF~~~~~~~~~~~r~~R~~   78 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAK--FKGGDEEWYFFSPRKKKYPNGGRPNRVT   78 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHH--SSS-SSEEEEEEE----------S-EEE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhh--ccCCCceEEEEEecccccCCcccccccc
Confidence            899999999999999999999999998887 7899999999999999942  2346779999999999999999999999


Q ss_pred             cccEEeecCcceeecc-CCeEeeeEEEEEeecCCCCCCCccCeEEEEEEeC
Q 014130          108 RKGYWKATGKDREIRR-ESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLV  157 (430)
Q Consensus       108 ggG~WKatGk~k~I~~-~g~vVG~KKtLvFy~grap~G~KT~WvMhEYrL~  157 (430)
                      ++|+||.+|+.++|.. +|.+||+|++|+||.++.+.+.+|+|+||||+|.
T Consensus        79 ~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   79 GGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             TTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             cceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            9999999999999987 8999999999999998888889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.73  E-value=2.8  Score=39.57  Aligned_cols=48  Identities=27%  Similarity=0.405  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130          377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLK  424 (430)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (430)
                      -|.+|+.+|.+..---|.|+-|++.-+.-.|.++.++..|.+||.+|-
T Consensus       131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv  178 (194)
T PF08614_consen  131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV  178 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666667777777789999999999999999999999999999973

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	430
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		5e-39
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		6e-39
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-36

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  158 bits (400), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 32  GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
           GFRF+PTDEEL+  YL RK     F    I E+D+YK +PW L + +     ++EWYFFS
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 80
Query: 92  PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
           P D+KY NG+R NR    GYWKATG D+ I  E Q +G+KK LVF+ G+AP G +TNW+M
Sbjct: 81  PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIM 140
Query: 152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNN 181
           HEYRL+E         L  +VLCR++ K +
Sbjct: 141 HEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 170

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  158 bits (399), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 32  GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
           GFRF+PTDEEL+  YL RK     F    I E+D+YK +PW L + +     ++EWYFFS
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 77
Query: 92  PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
           P D+KY NG+R NR    GYWKATG D+ I  E Q +G+KK LVF+ G+AP G +TNW+M
Sbjct: 78  PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIM 137
Query: 152 HEYRLVEEEFEQLGPGLASYVLCRVFHKNN 181
           HEYRL+E         L  +VLCR++ K +
Sbjct: 138 HEYRLIEPSRRNGSTKLDDWVLCRIYKKQS 167

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/155 (48%), Positives = 101/155 (65%), Gaps = 7/155 (4%)
Query: 32  GFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFS 91
           GFRFHPTD+ELV +YL RK   +      I EVD+YK +PWDL + +    R  EWYFF+
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR--EWYFFT 75
Query: 92  PLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVM 151
           P D+KY NG+R NRA   GYWKATG D+ +    + +G+KK LVF++G+AP G +T+W+M
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIM 135
Query: 152 HEYRLVEEEFEQLGPGLAS-----YVLCRVFHKNN 181
           HEYRL +      G    S     +VLCR+++K N
Sbjct: 136 HEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	430
1ut7_A	171	No apical meristem protein; transcription regulati	2e-96
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	4e-93

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  285 bits (731), Expect = 2e-96
 Identities = 77/156 (49%), Positives = 100/156 (64%), Gaps = 2/156 (1%)

Query: 29  LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWY 88
           L PGFRF+PTDEEL+  YL RK     F    I E+D+YK +PW L + +     ++EWY
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWY 74

Query: 89  FFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTN 148
           FFSP D+KY NG+R NR    GYWKATG D+ I  E Q +G+KK LVF+ G+AP G +TN
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTN 134

Query: 149 WVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNIGP 184
           W+MHEYRL+E         L  +VLCR++ K +   
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  277 bits (710), Expect = 4e-93
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 7/161 (4%)

Query: 29  LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWY 88
           L PGFRFHPTD+ELV +YL RK   +      I EVD+YK +PWDL + +      +EWY
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWY 72

Query: 89  FFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTN 148
           FF+P D+KY NG+R NRA   GYWKATG D+ +    + +G+KK LVF++G+AP G +T+
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTD 132

Query: 149 WVMHEYRLVEEE-----FEQLGPGLASYVLCRVFHKNNIGP 184
           W+MHEYRL +        ++    L  +VLCR+++K N   
Sbjct: 133 WIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	93.33
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	91.56
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.23
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	86.13
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	83.27
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	81.56

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.6e-54  Score=399.21  Aligned_cols=157  Identities=48%  Similarity=0.943  Sum_probs=136.4

Q ss_pred             ccCCCCCCCCceeCCChHHHHHHHHhhhhcCCCCCCCceeeccCCCCCCccccccccccCCCCceeeccCCcccccCCCc
Q 014130           23 KKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGAR  102 (430)
Q Consensus        23 A~~~~~LPPGfRF~PTDEELV~~YL~rKi~G~plp~~~I~evDVY~~ePWdLp~~~~~k~~d~eWYFFs~r~kK~~~G~R  102 (430)
                      +...+.|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+.  .++.+|||||++++||++|.|
T Consensus         9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R   86 (174)
T 3ulx_A            9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSR   86 (174)
T ss_dssp             CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CC
T ss_pred             cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhc--cCCceEEEEeccccccCCCCC
Confidence            455689999999999999999999999999999999999999999999999998764  356799999999999999999


Q ss_pred             ccccccccEEeecCcceeeccCCeEeeeEEEEEeecCCCCCCCccCeEEEEEEeCcchhhc----cCC-CCCCeeEEEEe
Q 014130          103 MNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQ----LGP-GLASYVLCRVF  177 (430)
Q Consensus       103 ~nRatggG~WKatGk~k~I~~~g~vVG~KKtLvFy~grap~G~KT~WvMhEYrL~~~~~~~----~g~-~~de~VLCRIf  177 (430)
                      .+|++++||||++|++++|..+|.+||+||+|+||.|++++|.||+|+||||+|.+.....    .+. ..++|||||||
T Consensus        87 ~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf  166 (174)
T 3ulx_A           87 PNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLY  166 (174)
T ss_dssp             SCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEE
T ss_pred             ceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEE
Confidence            9999999999999999999988999999999999999999999999999999999864321    121 26899999999


Q ss_pred             eeCC
Q 014130          178 HKNN  181 (430)
Q Consensus       178 ~K~~  181 (430)
                      +|++
T Consensus       167 ~K~~  170 (174)
T 3ulx_A          167 NKKN  170 (174)
T ss_dssp             ESCC
T ss_pred             EcCC
Confidence            9885

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.8e-54  Score=397.75  Aligned_cols=158  Identities=49%  Similarity=0.902  Sum_probs=132.5

Q ss_pred             ccCCCCCCCCceeCCChHHHHHHHHhhhhcCCCCCCCceeeccCCCCCCccccccccccCCCCceeeccCCcccccCCCc
Q 014130           23 KKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGAR  102 (430)
Q Consensus        23 A~~~~~LPPGfRF~PTDEELV~~YL~rKi~G~plp~~~I~evDVY~~ePWdLp~~~~~k~~d~eWYFFs~r~kK~~~G~R  102 (430)
                      +..+..|||||||||||||||.|||++|+.|.+++..+|+++|||++|||+||+.+  ..++.+||||+++++||++|.|
T Consensus        11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~--~~g~~ewyFFs~r~~k~~~g~R   88 (171)
T 1ut7_A           11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSR   88 (171)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------
T ss_pred             cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchh--hcCCccEEEEeccccccCCCCc
Confidence            34568999999999999999999999999999999999999999999999999875  3457899999999999999999


Q ss_pred             ccccccccEEeecCcceeeccCCeEeeeEEEEEeecCCCCCCCccCeEEEEEEeCcchhhccCCCCCCeeEEEEeeeCCC
Q 014130          103 MNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKNNI  182 (430)
Q Consensus       103 ~nRatggG~WKatGk~k~I~~~g~vVG~KKtLvFy~grap~G~KT~WvMhEYrL~~~~~~~~g~~~de~VLCRIf~K~~~  182 (430)
                      ++|++++||||++|++++|..++.+||+||+|+||.|++++|.||+|+||||+|............++|||||||+|++.
T Consensus        89 ~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             ccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            99999999999999999999889999999999999999999999999999999997642211123789999999999864

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=93.33  E-value=0.16  Score=43.59  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHH----HHHHHhhhhhhhhhhcHHHHHhhh
Q 014130          374 CAKLIKELKNQVREVVVERATLKLDLMSAQA----MINILHSRIDFLTRENEDLKRKNK  428 (430)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  428 (430)
                      |.|-+.+|+..+..+..|.|.+|--.++++.    .||.||--|+.|...++.|+..+|
T Consensus         1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iR   59 (111)
T 2v66_B            1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR   59 (111)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999986    588899999999988888887766

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=91.56  E-value=0.32  Score=35.10  Aligned_cols=46  Identities=28%  Similarity=0.398  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHH
Q 014130          377 LIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENED  422 (430)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (430)
                      ++..|++|+..+.-|.||||..-.--..+|..|+-.|.-|++++|+
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkkiee   49 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIEE   49 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence            5778999999999999999999998889998888888888777653

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.23  E-value=1.5  Score=40.81  Aligned_cols=55  Identities=16%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhhHHHH----HHHHhhhhhhhhhhcHHHHHhhh
Q 014130          374 CAKLIKELKNQVREVVVERATLKLDLMSAQAM----INILHSRIDFLTRENEDLKRKNK  428 (430)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  428 (430)
                      +.|-+.+|+..+..+..|.+.+|.....++..    ||.||..|..|+..++.|+..+|
T Consensus        54 ~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir  112 (189)
T 2v71_A           54 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR  112 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778899999999999999999988888777    99999988888888888877665

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=86.13  E-value=0.83  Score=36.87  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=32.9

Q ss_pred             HHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhh
Q 014130          379 KELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRE  419 (430)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (430)
                      +||=..|.+++.|+|.|+.|+-+-+..+.-++.||..|..|
T Consensus        33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeE   73 (77)
T 2w83_C           33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEE   73 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57777999999999999999999999999999999988754

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=83.27  E-value=3  Score=35.21  Aligned_cols=53  Identities=23%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhh----------------------HHHHHHHHhhhhhhhhhhcHHHHHhhhc
Q 014130          376 KLIKELKNQVREVVVERATLKLDLMS----------------------AQAMINILHSRIDFLTRENEDLKRKNKA  429 (430)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (430)
                      +-|+.|+.|..++-=|.+.|+.++++                      +.|. .-.+.-|+.|..|+|.||..|+.
T Consensus        19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~-~~~~~~~e~Lq~E~erLr~~v~~   93 (100)
T 1go4_E           19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVAR-QRLREDHSQLQAECERLRGLLRA   93 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHH-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555555555555556666655                      2222 23577889999999999999875

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=81.56  E-value=1.8  Score=34.18  Aligned_cols=42  Identities=21%  Similarity=0.194  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHhhhHHHHHHHHhhhhhhhhhhcHHHH
Q 014130          376 KLIKELKNQVREVVVERATLKLDLMSAQAMINILHSRIDFLTRENEDLK  424 (430)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (430)
                      +.|.+||.+|.++..+.+.       +.+.+..|...|+.|..||+.||
T Consensus        29 ~~i~~LE~~v~~le~~~~~-------l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           29 DHLKALETQVVTLKELHSS-------TTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHcC
Confidence            4899999998877655544       45667788888888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	430
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	6e-69

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  214 bits (545), Expect = 6e-69
 Identities = 77/151 (50%), Positives = 99/151 (65%), Gaps = 2/151 (1%)

Query: 29  LAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWY 88
           L PGFRF+PTDEEL+  YL RK     F    I E+D+YK +PW L + +     ++EWY
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWY 74

Query: 89  FFSPLDKKYVNGARMNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTN 148
           FFSP D+KY NG+R NR    GYWKATG D+ I  E Q +G+KK LVF+ G+AP G +TN
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTN 134

Query: 149 WVMHEYRLVEEEFEQLGPGLASYVLCRVFHK 179
           W+MHEYRL+E         L  +VLCR++ K
Sbjct: 135 WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	430
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=7.2e-52  Score=374.93  Aligned_cols=156  Identities=49%  Similarity=0.915  Sum_probs=131.4

Q ss_pred             ccCCCCCCCCceeCCChHHHHHHHHhhhhcCCCCCCCceeeccCCCCCCccccccccccCCCCceeeccCCcccccCCCc
Q 014130           23 KKNTAALAPGFRFHPTDEELVSYYLKRKVYNRPFRFNAIGEVDIYKNEPWDLADFSWMKTRDQEWYFFSPLDKKYVNGAR  102 (430)
Q Consensus        23 A~~~~~LPPGfRF~PTDEELV~~YL~rKi~G~plp~~~I~evDVY~~ePWdLp~~~~~k~~d~eWYFFs~r~kK~~~G~R  102 (430)
                      ...++.|||||||+|||||||.|||++|+.|.|++..+|+++|||++|||+||+.+  ..++++||||+++.+++++|.|
T Consensus        11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~--~~~~~~wyFft~~~~k~~~g~r   88 (166)
T d1ut7a_          11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSR   88 (166)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------
T ss_pred             ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchh--ccCcceEEEEeeeccccCCCCc
Confidence            34568999999999999999999999999999999999999999999999999764  3457789999999999999999


Q ss_pred             ccccccccEEeecCcceeeccCCeEeeeEEEEEeecCCCCCCCccCeEEEEEEeCcchhhccCCCCCCeeEEEEeeeC
Q 014130          103 MNRATRKGYWKATGKDREIRRESQLIGMKKTLVFHSGRAPDGQRTNWVMHEYRLVEEEFEQLGPGLASYVLCRVFHKN  180 (430)
Q Consensus       103 ~nRatggG~WKatGk~k~I~~~g~vVG~KKtLvFy~grap~G~KT~WvMhEYrL~~~~~~~~g~~~de~VLCRIf~K~  180 (430)
                      .+|++++|+||.+|+++.|..+|.+||+||+|+||.++.+++.+|+|+||||+|.+..........++|||||||+|.
T Consensus        89 ~~R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          89 PNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cccccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999976543333347899999999874