Citrus Sinensis ID: 014133
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| A8G827 | 498 | Guanosine-5'-triphosphate | yes | no | 0.855 | 0.738 | 0.283 | 5e-32 | |
| B2VG72 | 494 | Guanosine-5'-triphosphate | yes | no | 0.832 | 0.724 | 0.281 | 7e-31 | |
| C6DHF6 | 498 | Guanosine-5'-triphosphate | yes | no | 0.858 | 0.740 | 0.271 | 6e-30 | |
| B1JQ12 | 498 | Guanosine-5'-triphosphate | yes | no | 0.844 | 0.728 | 0.282 | 1e-29 | |
| Q66G20 | 498 | Guanosine-5'-triphosphate | yes | no | 0.844 | 0.728 | 0.282 | 1e-29 | |
| A4TRC9 | 498 | Guanosine-5'-triphosphate | yes | no | 0.844 | 0.728 | 0.282 | 1e-29 | |
| A9R8H6 | 498 | Guanosine-5'-triphosphate | yes | no | 0.844 | 0.728 | 0.282 | 1e-29 | |
| Q74R94 | 498 | Guanosine-5'-triphosphate | yes | no | 0.844 | 0.728 | 0.282 | 1e-29 | |
| B2K045 | 498 | Guanosine-5'-triphosphate | yes | no | 0.844 | 0.728 | 0.282 | 1e-29 | |
| A7FD46 | 498 | Guanosine-5'-triphosphate | yes | no | 0.844 | 0.728 | 0.282 | 1e-29 |
| >sp|A8G827|GPPA_SERP5 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Serratia proteamaculans (strain 568) GN=gppA PE=3 SV=1 | Back alignment and function desciption |
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Score = 139 bits (350), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 209/424 (49%), Gaps = 56/424 (13%)
Query: 13 TLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESL 72
L+A+ID+G++SF +L++R G T+ +K+ V L L + +S ++ R + L
Sbjct: 6 ALYAAIDLGSNSFHMLVVREV-AGSIQTLARIKRKVRLAAGLDQNNLLSHEAMQRGWQCL 64
Query: 73 LMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYM 132
+F + +Q +I R R VATA +R A N DEF++ + +G + V++GE+EA+ +Y
Sbjct: 65 KLFSERLQ--DIPRAQIRVVATATLRLASNADEFLQTAEQILGCPIQVISGEEEARLIYH 122
Query: 133 GVLQFLPVFD-RLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKF----GTCSG 187
GV D RLV VDIGGGSTE V G + S+++G V+ E+F
Sbjct: 123 GVAHTTGGPDQRLV--VDIGGGSTELVTGTGAQAAQLYSLSMGCVTWLERFFSDRNLGQE 180
Query: 188 NFEEVLK-MREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS-GYDRDFVDN 245
NFE + RE VR + ++++ G++V VG+SGT++A+++ +V+ G D
Sbjct: 181 NFERAEQAAREMVRPI------APQLRQHGWQVCVGASGTVQALQEIMVAQGMDE----- 229
Query: 246 VGDFGGCKRDWRLSRGELKGIVER-LCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEI 304
R++ +L+ + +R + C G++E + E R+ +G +L I
Sbjct: 230 -----------RITLSKLRQLKQRAIQC---GKLEELEIEGLTLERALVFPSGLSILLAI 275
Query: 305 FELLGIEEMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGA 364
F+ LGIE M ++G L EG+V L + + R R++ L R+
Sbjct: 276 FQELGIESMMLAGGALREGLVYGML-----HLPVEQDIRSRTIRNLQRRY---------- 320
Query: 365 QCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQS 424
+ + E + + ++ QV + + E L +ACL+H IG K + +
Sbjct: 321 ---LLDTEQAERVSQLAANFSQQVSNEWQLDARCRELLHSACLIHEIGLSVDFKQAPQHA 377
Query: 425 CHII 428
++I
Sbjct: 378 AYLI 381
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Conversion of pppGpp to ppGpp. Guanosine pentaphosphate (pppGpp) is a cytoplasmic signaling molecule which together with ppGpp controls the "stringent response", an adaptive process that allows bacteria to respond to amino acid starvation, resulting in the coordinated regulation of numerous cellular activities. Serratia proteamaculans (strain 568) (taxid: 399741) EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 4EC: 0 |
| >sp|B2VG72|GPPA_ERWT9 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|C6DHF6|GPPA_PECCP Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|B1JQ12|GPPA_YERPY Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q66G20|GPPA_YERPS Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|A4TRC9|GPPA_YERPP Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Yersinia pestis (strain Pestoides F) GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|A9R8H6|GPPA_YERPG Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q74R94|GPPA_YERPE Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Yersinia pestis GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|B2K045|GPPA_YERPB Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gppA PE=3 SV=1 | Back alignment and function description |
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| >sp|A7FD46|GPPA_YERP3 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gppA PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 225450640 | 572 | PREDICTED: exopolyphosphatase [Vitis vin | 0.958 | 0.720 | 0.598 | 1e-138 | |
| 147856441 | 545 | hypothetical protein VITISV_019566 [Viti | 0.958 | 0.755 | 0.595 | 1e-137 | |
| 255542850 | 615 | Guanosine-5'-triphosphate,3'-diphosphate | 0.944 | 0.660 | 0.594 | 1e-133 | |
| 224123694 | 495 | predicted protein [Populus trichocarpa] | 0.948 | 0.824 | 0.614 | 1e-132 | |
| 3249102 | 568 | Similar to exopolyphosphatase gb|1653871 | 0.958 | 0.725 | 0.593 | 1e-129 | |
| 334182412 | 600 | uncharacterized protein [Arabidopsis tha | 0.958 | 0.686 | 0.593 | 1e-128 | |
| 170792412 | 422 | Ppx-GppA phosphatase protein [Eutrema sa | 0.962 | 0.981 | 0.579 | 1e-128 | |
| 297849216 | 1014 | pentatricopeptide repeat-containing prot | 0.930 | 0.394 | 0.566 | 1e-121 | |
| 170792416 | 520 | Ppx-GppA phosphatase protein (exopolypho | 0.927 | 0.767 | 0.550 | 1e-119 | |
| 170792414 | 564 | Ppx-GppA phosphatase protein (exopolypho | 0.937 | 0.714 | 0.492 | 1e-105 |
| >gi|225450640|ref|XP_002278296.1| PREDICTED: exopolyphosphatase [Vitis vinifera] gi|296089751|emb|CBI39570.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/423 (59%), Positives = 323/423 (76%), Gaps = 11/423 (2%)
Query: 11 PQTLFASIDMGTSSFKLLIIRAYPN-GKFLTIDTLKQPVILGRDLSSSCSISTQSQARSV 69
P LFASIDMGT+SFKLL ++ P+ GKFL + LK+PV+LGR +S+ + + SQ R++
Sbjct: 13 PTNLFASIDMGTNSFKLLTVQFNPSTGKFLHLHRLKEPVVLGRQAASA-AAAVDSQLRAI 71
Query: 70 ESLLMFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKF 129
E+L FR+ +Q+H I R R VATAAVR A N+ EF+ VR++VGFEV+VL+GE+EA+
Sbjct: 72 EALKEFRNFLQNHEIHRH--RTVATAAVREAGNQAEFLRRVRDEVGFEVEVLSGEEEARL 129
Query: 130 VYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNF 189
+Y+G LQFLP++++ L +DIGGGSTEF++G++GK +F SV LGHV+L++KF N
Sbjct: 130 IYLGALQFLPIYEKTALVIDIGGGSTEFLLGQKGKAIFGTSVKLGHVNLTQKFV----NH 185
Query: 190 EEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDF 249
E+L+MR ++R ++ + G+VEK+K GFE+AVGSSGT+++IEKA+ SG+ R+ V N G
Sbjct: 186 NEILQMRSHIRSILRQCGIVEKIKHHGFEIAVGSSGTVQSIEKAIFSGFSRNVVSNDGAL 245
Query: 250 -GGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELL 308
G RDWR SR EL+ +VERLC GG +ER RR+RFFKRRSEFIVAGAVLLDEIF +L
Sbjct: 246 CGDLGRDWRFSREELRILVERLCGGGGEAIERARRDRFFKRRSEFIVAGAVLLDEIFAML 305
Query: 309 GIEEMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCAS 368
IEEMEVSGY LGEGVVA+ L +V D YD NANARW SVVRLA RF KK++ +QCA+
Sbjct: 306 DIEEMEVSGYALGEGVVAEMLLQVCDNYDFNANARWGSVVRLATRFLGKKKMGTASQCAN 365
Query: 369 IAKDIFEGLRKCDKL--YNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCH 426
I K IFEGLRKCD L NQVKL S DKDLEYLEAAC+LHNIG T +KGYHKQSC+
Sbjct: 366 ITKVIFEGLRKCDTLAETENQVKLPVSLNDKDLEYLEAACVLHNIGLITGEKGYHKQSCN 425
Query: 427 IIM 429
IIM
Sbjct: 426 IIM 428
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147856441|emb|CAN82841.1| hypothetical protein VITISV_019566 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255542850|ref|XP_002512488.1| Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, putative [Ricinus communis] gi|223548449|gb|EEF49940.1| Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224123694|ref|XP_002330185.1| predicted protein [Populus trichocarpa] gi|222871641|gb|EEF08772.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|3249102|gb|AAC24085.1| Similar to exopolyphosphatase gb|1653871 from Synechocystis sp. gb|D90917 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|334182412|ref|NP_001184946.1| uncharacterized protein [Arabidopsis thaliana] gi|332190291|gb|AEE28412.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|170792412|emb|CAP08386.1| Ppx-GppA phosphatase protein [Eutrema salsugineum] | Back alignment and taxonomy information |
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| >gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|170792416|emb|CAP08388.2| Ppx-GppA phosphatase protein (exopolyphosphatase) [Lupinus albus] | Back alignment and taxonomy information |
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| >gi|170792414|emb|CAP08387.1| Ppx-GppA phosphatase protein (exopolyphosphatase) [Capsicum annuum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| UNIPROTKB|Q74A32 | 513 | gppA-2 "PppGpp 5'-phosphohydro | 0.5 | 0.419 | 0.282 | 1.6e-20 | |
| TIGR_CMR|GSU_2559 | 513 | GSU_2559 "exopolyphosphatase, | 0.5 | 0.419 | 0.282 | 1.6e-20 | |
| UNIPROTKB|Q9KU08 | 500 | ppx "Exopolyphosphatase" [Vibr | 0.5 | 0.43 | 0.283 | 7.1e-20 | |
| TIGR_CMR|VC_0722 | 500 | VC_0722 "exopolyphosphatase" [ | 0.5 | 0.43 | 0.283 | 7.1e-20 | |
| UNIPROTKB|Q87UP7 | 500 | ppx "Exopolyphosphatase" [Pseu | 0.537 | 0.462 | 0.266 | 1.2e-18 | |
| TIGR_CMR|SO_0408 | 306 | SO_0408 "guanosine-5-triphosph | 0.504 | 0.709 | 0.243 | 2e-18 | |
| TIGR_CMR|SO_2185 | 518 | SO_2185 "exopolyphosphatase" [ | 0.516 | 0.428 | 0.277 | 5.1e-18 | |
| UNIPROTKB|P0AFL6 | 513 | ppx "exopolyphosphatase monome | 0.513 | 0.430 | 0.268 | 3.6e-17 | |
| UNIPROTKB|P25552 | 494 | gpp "Gpp" [Escherichia coli K- | 0.513 | 0.447 | 0.275 | 2e-16 | |
| UNIPROTKB|Q9KV53 | 497 | gppA "Guanosine-5'-triphosphat | 0.511 | 0.442 | 0.258 | 2.4e-16 |
| UNIPROTKB|Q74A32 gppA-2 "PppGpp 5'-phosphohydrolase and exopolyphosphatase, HD domain-containing" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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Score = 204 (76.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 63/223 (28%), Positives = 99/223 (44%)
Query: 16 ASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLXXXXXXXXXXXXXXVESLLMF 75
A+ID+GT+S + +++ NGKF +D K V LG + V +L
Sbjct: 7 AAIDIGTNSIRCIVVEVTRNGKFRVLDDEKATVRLGEGMAASGTISPAAWERAVTALGRM 66
Query: 76 RDIIQSHNISRDHXXXXXXXXXXXXENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVL 135
+ I+ + + N +EF+ V E VG V V++GE+EA+ + V
Sbjct: 67 KKIVDGYGVKVVEAVATSAVRRAA--NGEEFIRTVEETVGVRVAVISGEEEAELAALSVR 124
Query: 136 QFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNFEEVL-K 194
+ VDIGGGS E V + S+ LG V L+E+F + L +
Sbjct: 125 NHFDMEGVRYAMVDIGGGSLEIVTALGTHIEDIHSLELGAVVLTERFVRSDPPRQADLDR 184
Query: 195 MREYVRMVILEFGLVEKVKESG-FEVAVGSSGTIRAIEKAVVS 236
+R++VR + E E G + VGS GTI +I V++
Sbjct: 185 LRKHVRASLKE----SLGAEWGHLQSLVGSGGTITSIAAMVMA 223
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| TIGR_CMR|GSU_2559 GSU_2559 "exopolyphosphatase, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KU08 ppx "Exopolyphosphatase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_0722 VC_0722 "exopolyphosphatase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q87UP7 ppx "Exopolyphosphatase" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_0408 SO_0408 "guanosine-5-triphosphate,3-diphosphate pyrophosphatase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_2185 SO_2185 "exopolyphosphatase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P0AFL6 ppx "exopolyphosphatase monomer" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P25552 gpp "Gpp" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KV53 gppA "Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.1.40 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| COG0248 | 492 | COG0248, GppA, Exopolyphosphatase [Nucleotide tran | 1e-80 | |
| TIGR03706 | 300 | TIGR03706, exo_poly_only, exopolyphosphatase | 1e-60 | |
| pfam02541 | 285 | pfam02541, Ppx-GppA, Ppx/GppA phosphatase family | 3e-39 | |
| PRK11031 | 496 | PRK11031, PRK11031, guanosine pentaphosphate phosp | 1e-34 | |
| PRK10854 | 513 | PRK10854, PRK10854, exopolyphosphatase; Provisiona | 8e-28 |
| >gnl|CDD|223326 COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 1e-80
Identities = 132/425 (31%), Positives = 217/425 (51%), Gaps = 52/425 (12%)
Query: 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLL 73
A+ID+G++SF+L++ P G F + K+ V LG L ++ ++S ++ R++ +L
Sbjct: 4 RVAAIDLGSNSFRLVVAEITP-GSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALK 62
Query: 74 MFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMG 133
F +++ + R VAT+A+R A N DEF+ V +++G ++V++GE+EA+ +Y+G
Sbjct: 63 RFAELLDGFGA--EEVRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLG 120
Query: 134 VLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSG-NFEEV 192
V LP L +DIGGGSTE V+G ++ S+ LG V L+E+F + E
Sbjct: 121 VASTLPRKGD-GLVIDIGGGSTELVLGDNFEIGLLISLPLGCVRLTERFFPDDPISEENF 179
Query: 193 LKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEK--AVVSGYDRDFVDNVGDFG 250
K R+ VR + E ++ + +G+ VG+SGTIRA+ K Y +
Sbjct: 180 AKARDAVREELEEI--AKEYRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVLHGY---- 233
Query: 251 GCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFF---KRRSEFIVAGAVLLDEIFEL 307
++ EL+ ++ERL + R + K R++ I+AGA +L+ +FE
Sbjct: 234 ------EITAEELEKLLERLI-----RMTSEERLKLEGLSKDRADVILAGAAILEAVFEA 282
Query: 308 LGIEEMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFN----NKKRVKAG 363
L IE M VS GL EGV+ D L + + R RS++ LA+R+ KRV
Sbjct: 283 LSIERMIVSDGGLREGVLYDLLLR-----FEAEDIRKRSLLELALRYLIDLAQAKRVA-- 335
Query: 364 AQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQ 423
+ +L++ + L+ E+ + LEAA +LH IG S G+HK
Sbjct: 336 --------------KLALELFDQLLALLKIDEEAEERLLEAAAMLHEIGLNISHSGHHKH 381
Query: 424 SCHII 428
S +II
Sbjct: 382 SAYII 386
|
Length = 492 |
| >gnl|CDD|234320 TIGR03706, exo_poly_only, exopolyphosphatase | Back alignment and domain information |
|---|
| >gnl|CDD|202276 pfam02541, Ppx-GppA, Ppx/GppA phosphatase family | Back alignment and domain information |
|---|
| >gnl|CDD|236826 PRK11031, PRK11031, guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|182781 PRK10854, PRK10854, exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 100.0 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 100.0 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 100.0 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 100.0 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 100.0 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.7 | |
| PF01150 | 434 | GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) fami | 98.99 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 98.81 | |
| KOG1385 | 453 | consensus Nucleoside phosphatase [Nucleotide trans | 98.64 | |
| KOG1386 | 501 | consensus Nucleoside phosphatase [Nucleotide trans | 98.54 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 98.35 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 98.23 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 98.15 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 97.96 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 97.75 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 97.72 | |
| PF01966 | 122 | HD: HD domain; InterPro: IPR006674 This domain is | 97.57 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 97.48 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 97.35 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 97.18 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 97.11 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 97.02 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 96.96 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 96.83 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 96.73 | |
| TIGR00295 | 164 | conserved hypothetical protein TIGR00295. This set | 96.65 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 96.64 | |
| cd00077 | 145 | HDc Metal dependent phosphohydrolases with conserv | 96.62 | |
| smart00471 | 124 | HDc Metal dependent phosphohydrolases with conserv | 96.27 | |
| COG3294 | 269 | HD supefamily hydrolase [General function predicti | 95.89 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 95.87 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 95.52 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 95.28 | |
| TIGR00277 | 80 | HDIG uncharacterized domain HDIG. This domain is f | 95.27 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 95.25 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 95.2 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 94.96 | |
| COG5371 | 549 | Golgi nucleoside diphosphatase [Carbohydrate trans | 94.87 | |
| PRK12703 | 339 | tRNA 2'-O-methylase; Reviewed | 94.7 | |
| TIGR03401 | 228 | cyanamide_fam HD domain protein, cyanamide hydrata | 94.68 | |
| PTZ00004 | 378 | actin-2; Provisional | 94.62 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 94.58 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 94.41 | |
| COG1078 | 421 | HD superfamily phosphohydrolases [General function | 94.36 | |
| COG1418 | 222 | Predicted HD superfamily hydrolase [General functi | 93.94 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 93.91 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 93.27 | |
| COG2206 | 344 | c-di-GMP phosphodiesterase class II (HD-GYP domain | 93.2 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 92.98 | |
| TIGR01596 | 177 | cas3_HD CRISPR-associated endonuclease Cas3-HD. CR | 92.64 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 92.15 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 91.72 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 90.71 | |
| TIGR03276 | 179 | Phn-HD phosphonate degradation operons associated | 90.67 | |
| PTZ00452 | 375 | actin; Provisional | 90.55 | |
| COG1940 | 314 | NagC Transcriptional regulator/sugar kinase [Trans | 90.05 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 90.02 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 89.84 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 89.78 | |
| TIGR00488 | 158 | putative HD superfamily hydrolase of NAD metabolis | 89.67 | |
| PTZ00281 | 376 | actin; Provisional | 89.57 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 89.53 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 89.48 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 89.37 | |
| PF00480 | 179 | ROK: ROK family; InterPro: IPR000600 A family of b | 89.33 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 89.12 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 88.66 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 88.63 | |
| PRK12705 | 508 | hypothetical protein; Provisional | 88.55 | |
| TIGR01353 | 381 | dGTP_triPase deoxyguanosinetriphosphate triphospho | 88.38 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 88.35 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 88.18 | |
| PRK10119 | 231 | putative hydrolase; Provisional | 87.89 | |
| COG3437 | 360 | Response regulator containing a CheY-like receiver | 87.86 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 87.6 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 87.46 | |
| PRK11678 | 450 | putative chaperone; Provisional | 87.42 | |
| PRK13318 | 258 | pantothenate kinase; Reviewed | 86.74 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 86.69 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 86.66 | |
| PRK01286 | 336 | deoxyguanosinetriphosphate triphosphohydrolase-lik | 86.6 | |
| COG1713 | 187 | Predicted HD superfamily hydrolase involved in NAD | 86.44 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 86.42 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 86.38 | |
| KOG2681 | 498 | consensus Metal-dependent phosphohydrolase [Functi | 85.87 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 85.28 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 84.98 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 84.84 | |
| PRK07152 | 342 | nadD putative nicotinate-nucleotide adenylyltransf | 84.63 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 84.61 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 84.23 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 84.04 | |
| PRK05318 | 432 | deoxyguanosinetriphosphate triphosphohydrolase-lik | 83.81 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 83.3 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 83.11 | |
| COG4341 | 186 | Predicted HD phosphohydrolase [General function pr | 82.81 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 82.23 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 82.14 | |
| PRK01096 | 440 | deoxyguanosinetriphosphate triphosphohydrolase-lik | 82.04 | |
| TIGR03760 | 218 | ICE_TraI_Pfluor integrating conjugative element re | 81.68 | |
| smart00732 | 99 | YqgFc Likely ribonuclease with RNase H fold. YqgF | 81.48 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 81.27 | |
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 81.09 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 81.01 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 80.78 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 80.7 |
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-89 Score=707.82 Aligned_cols=382 Identities=29% Similarity=0.423 Sum_probs=346.7
Q ss_pred cCCCCCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 014133 8 MQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSHNISRD 87 (430)
Q Consensus 8 ~~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~~v~~~ 87 (430)
|.++.+.+|||||||||+||+|+++.+ +.++++++.|++||||+|++.+|.|++++|+|++++|++|+++|++|+|+
T Consensus 1 ~~~~~~~~A~IDIGSNSirL~I~~~~~-~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~-- 77 (496)
T PRK11031 1 MLSSSSLYAAIDLGSNSFHMLVVREVA-GSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPS-- 77 (496)
T ss_pred CCCCCCEEEEEEccccceeEEEEEecC-CceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 345578999999999999999999864 78999999999999999999999999999999999999999999999995
Q ss_pred cEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeCCeEee
Q 014133 88 HTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVF 167 (430)
Q Consensus 88 ~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~~~~~~ 167 (430)
+|++|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++.. ++++++||||||||+++++++++.+
T Consensus 78 ~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~-~~~lviDIGGGStEl~~~~~~~~~~ 156 (496)
T PRK11031 78 QIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGA-DQRLVVDIGGASTELVTGTGAQATS 156 (496)
T ss_pred eEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCC-CCEEEEEecCCeeeEEEecCCceee
Confidence 799999999999999999999999999999999999999999999999988753 4589999999999999999999999
Q ss_pred eeeeehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEEEeechhHHHHHHHHHcCCCcccccCC
Q 014133 168 CESVNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNV 246 (430)
Q Consensus 168 ~~Sl~lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~lig~gGt~~~l~~~~~~~~~~~~~~~~ 246 (430)
++|+|+|+|||+++|..++ +++.+...+++|+++.+.. +.++++..++..+||+|||+++++++.... .
T Consensus 157 ~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~~lig~gGt~~~la~~~~~~-~------- 226 (496)
T PRK11031 157 LFSLSMGCVTWLERYFKDRNLTQENFDAAEKAAREVLRP--VADELREHGWQVCVGASGTVQALQEIMMAQ-G------- 226 (496)
T ss_pred eeEEeccchHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH--HHHHHhhcCCCEEEEEChHHHHHHHHHHhc-C-------
Confidence 9999999999999998775 5777788899999999974 344555445667999999999999975321 1
Q ss_pred CCCCCCcccceeCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcchHHHHHH
Q 014133 247 GDFGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGLGEGVVA 326 (430)
Q Consensus 247 ~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~glreGll~ 326 (430)
.+ ..++.++++++++++..++.+ ++.+++||+++|+|+|+||++|+.++|+.++++++++|++|||||+++
T Consensus 227 ------~~-~~i~~~~l~~l~~~l~~~~~~--~~~~~~gl~~~Radii~~g~~Il~~i~~~~~~~~i~vs~~glREGl~~ 297 (496)
T PRK11031 227 ------MD-ERITLAKLQQLKQRAIQCGRL--EELEIEGLTLERALVFPSGLAILIAIFEELNIESMTLAGGALREGLVY 297 (496)
T ss_pred ------CC-CcCCHHHHHHHHHHHhcCCHH--HHhcCCCCCccHHHHHHHHHHHHHHHHHHcCcCEEEECCchHHHHHHH
Confidence 01 259999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCCcchHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHHHHHHHH
Q 014133 327 DSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAAC 406 (430)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~s~~~la~ry~~~~~~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~lL~~Aa 406 (430)
+++.+. ...+++..|+.+++.||++|. .|+++|+++|++|||||++.|+ +++++|+||++||
T Consensus 298 ~~~~~~-----~~~d~~~~s~~~l~~ry~~d~--~ha~~v~~~a~~Lf~~l~~~~~-----------l~~~~~~LL~~Aa 359 (496)
T PRK11031 298 GMLHLP-----VEQDIRSRTLRNIQRRFQIDT--EQAQRVAKLADNFLQQVENEWH-----------LEPRSRELLISAC 359 (496)
T ss_pred HHHhhh-----cccchHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHHhhhhhcC-----------CChHHHHHHHHHH
Confidence 998763 124667789999999999987 9999999999999999999996 4568899999999
Q ss_pred HHhhhhcccCCCCcchhhhhhhcC
Q 014133 407 LLHNIGHFTSKKGYHKQSCHIIMV 430 (430)
Q Consensus 407 ~LhdiG~~I~~~~h~~Hs~yiI~~ 430 (430)
+|||||+|||+++||+||||||+|
T Consensus 360 ~LhdiG~~I~~~~~~~Hs~yiI~~ 383 (496)
T PRK11031 360 QLHEIGLSVDFKQAPQHAAYLVRN 383 (496)
T ss_pred HHHhcCCccCCCccchHHHHHHhc
Confidence 999999999999999999999987
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
| >PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ] | Back alignment and domain information |
|---|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
| >KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
| >PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] | Back alignment and domain information |
|---|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
| >TIGR00295 conserved hypothetical protein TIGR00295 | Back alignment and domain information |
|---|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
| >cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >COG3294 HD supefamily hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
| >TIGR00277 HDIG uncharacterized domain HDIG | Back alignment and domain information |
|---|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >COG5371 Golgi nucleoside diphosphatase [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK12703 tRNA 2'-O-methylase; Reviewed | Back alignment and domain information |
|---|
| >TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family | Back alignment and domain information |
|---|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
| >COG1078 HD superfamily phosphohydrolases [General function prediction only] | Back alignment and domain information |
|---|
| >COG1418 Predicted HD superfamily hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
| >COG2206 c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01596 cas3_HD CRISPR-associated endonuclease Cas3-HD | Back alignment and domain information |
|---|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein | Back alignment and domain information |
|---|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
| >COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
| >TIGR00488 putative HD superfamily hydrolase of NAD metabolism | Back alignment and domain information |
|---|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
| >PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] | Back alignment and domain information |
|---|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
| >PRK12705 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative | Back alignment and domain information |
|---|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PRK10119 putative hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
| >PRK13318 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
| >PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional | Back alignment and domain information |
|---|
| >COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
| >KOG2681 consensus Metal-dependent phosphohydrolase [Function unknown] | Back alignment and domain information |
|---|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
| >PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated | Back alignment and domain information |
|---|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
| >PRK05318 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional | Back alignment and domain information |
|---|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG4341 Predicted HD phosphohydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
| >PRK01096 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03760 ICE_TraI_Pfluor integrating conjugative element relaxase, PFL_4751 family | Back alignment and domain information |
|---|
| >smart00732 YqgFc Likely ribonuclease with RNase H fold | Back alignment and domain information |
|---|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 430 | ||||
| 1u6z_A | 513 | Structure Of An E. Coli Exopolyphosphatase: Insight | 2e-17 | ||
| 2flo_A | 524 | Crystal Structure Of Exopolyphosphatase (Ppx) From | 2e-14 | ||
| 3mdq_A | 315 | Crystal Structure Of An Exopolyphosphatase (Chu_031 | 5e-14 | ||
| 2j4r_A | 308 | Structural Study Of The Aquifex Aeolicus Ppx-Gppa E | 4e-11 | ||
| 1t6d_A | 315 | Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSP | 8e-11 | ||
| 1t6c_A | 315 | Structural Characterization Of The PpxGPPA PROTEIN | 1e-10 | ||
| 3cer_A | 343 | Crystal Structure Of The Exopolyphosphatase-Like Pr | 3e-08 |
| >pdb|1U6Z|A Chain A, Structure Of An E. Coli Exopolyphosphatase: Insight Into The Processive Hydrolysis Of Polyphosphate And Its Regulation Length = 513 | Back alignment and structure |
|
| >pdb|2FLO|A Chain A, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli O157:h7 Length = 524 | Back alignment and structure |
| >pdb|3MDQ|A Chain A, Crystal Structure Of An Exopolyphosphatase (Chu_0316) From Cytophaga Hutchinsonii Atcc 33406 At 1.50 A Resolution Length = 315 | Back alignment and structure |
| >pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme Length = 308 | Back alignment and structure |
| >pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE: CRYSTAL Structure Of The Type Ii Variant Length = 315 | Back alignment and structure |
| >pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY: CRYSTAL Structure Of The Aquifex Aeolicus Family Member Length = 315 | Back alignment and structure |
| >pdb|3CER|A Chain A, Crystal Structure Of The Exopolyphosphatase-Like Protein Q8g5j2. Northeast Structural Genomics Consortium Target Blr13 Length = 343 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Length = 513 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-108
Identities = 95/419 (22%), Positives = 184/419 (43%), Gaps = 43/419 (10%)
Query: 14 LFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLL 73
FA++D+G++SF ++I R +G I LKQ V L L +S ++ R + L
Sbjct: 12 EFAAVDLGSNSFHMVIAR-VVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLS 70
Query: 74 MFRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMG 133
+F + +Q + V T +R A N +F++ + + + +++++G +EA+ ++MG
Sbjct: 71 LFAERLQGFSP--ASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMG 128
Query: 134 VLQFLPVFDRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCSGNF--EE 191
V P R L +DIGGGSTE VIG+ + + ES +G VS ++ + G E
Sbjct: 129 VEHTQPEKGR-KLVIDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFP-GGVINKEN 186
Query: 192 VLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVSGYDRDFVDNVGDFGG 251
+ R + + + G+ VA+G+SGTI+A + ++ +
Sbjct: 187 FQRARMAAAQKLETL--TWQFRIQGWNVAMGASGTIKAAHEVLMEMGE------------ 232
Query: 252 CKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIE 311
+D ++ L+ +V+ + + + R V G +L +F+ L I
Sbjct: 233 --KDGIITPERLEKLVKEVL--RHRNFASLSLPGLSEERKTVFVPGLAILCGVFDALAIR 288
Query: 312 EMEVSGYGLGEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFN-NKKRVKAGAQCASIA 370
E+ +S L EGV+ + + + + R R+ LA +++ + ++ +
Sbjct: 289 ELRLSDGALREGVLYEMEGR-----FRHQDVRSRTASSLANQYHIDSEQ---ARRVLDTT 340
Query: 371 KDIFEGLRKCDKLYNNQVKLIASFEDKDLEYLEAACLLHNIGHFTSKKGYHKQSCHIIM 429
++E R+ + L A +LH +G + G H+ S +I+
Sbjct: 341 MQMYEQWREQQPK---------LAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQ 390
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Length = 508 | Back alignment and structure |
|---|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Length = 315 | Back alignment and structure |
|---|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Length = 343 | Back alignment and structure |
|---|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Length = 315 | Back alignment and structure |
|---|
| >3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis} Length = 209 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 100.0 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 100.0 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 100.0 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 100.0 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 100.0 | |
| 3aap_A | 353 | Ectonucleoside triphosphate diphosphohydrolase I; | 99.97 | |
| 3cj1_A | 456 | Ectonucleoside triphosphate diphosphohydrolase 2; | 99.92 | |
| 3zx3_A | 452 | Ectonucleoside triphosphate diphosphohydrolase 1; | 99.84 | |
| 3rf0_A | 209 | Exopolyphosphatase; structural genomics, center fo | 99.77 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.75 | |
| 4a57_A | 611 | Nucleoside-triphosphatase 1; hydrolase; 2.00A {Tox | 98.32 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 98.29 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 98.12 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 97.23 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 96.91 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 96.82 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 96.8 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 96.74 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 96.6 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 96.39 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 96.13 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 96.12 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 95.36 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 95.19 | |
| 2q14_A | 410 | Phosphohydrolase; BT4208, HD domain, structural ge | 95.18 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 94.79 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 94.76 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 94.73 | |
| 2o08_A | 188 | BH1327 protein; putative HD superfamily hydrolase, | 94.59 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 94.45 | |
| 3tm8_A | 328 | BD1817, uncharacterized protein; HD-GYP, phosphodi | 94.44 | |
| 3irh_A | 480 | HD domain protein; phosphohydrolase, dntpase, stru | 93.88 | |
| 2pq7_A | 220 | Predicted HD superfamily hydrolase; 104161995, HD | 93.84 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 93.81 | |
| 2ogi_A | 196 | Hypothetical protein SAG1661; structural genomics, | 93.61 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 93.6 | |
| 3ccg_A | 190 | HD superfamily hydrolase; NP_347894.1, HD domain, | 93.5 | |
| 3u1n_A | 528 | SAM domain and HD domain-containing protein 1; deo | 92.98 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 92.94 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 92.81 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 92.7 | |
| 2hek_A | 371 | Hypothetical protein; predominantly alpha helical | 92.56 | |
| 3zyy_X | 631 | Iron-sulfur cluster binding protein; iron-sulfur-b | 92.45 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 92.26 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 92.23 | |
| 3djb_A | 223 | Hydrolase, HD family; all alpha-helical protein., | 92.07 | |
| 3b57_A | 209 | LIN1889 protein; Q92AN1, X-RAY, NESG, structural g | 91.93 | |
| 3dto_A | 223 | BH2835 protein; all alpha-helical protein, structu | 91.79 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 91.41 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 91.22 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 90.84 | |
| 2qgs_A | 225 | Protein Se1688; alpha-helical protein, structural | 90.47 | |
| 2pjq_A | 231 | Uncharacterized protein LP_2664; LPR71, NESG, stru | 90.26 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 89.39 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 89.26 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 89.05 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 88.02 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 87.54 | |
| 2pgs_A | 451 | Putative deoxyguanosinetriphosphate triphosphohyd; | 87.21 | |
| 3gw7_A | 239 | Uncharacterized protein YEDJ; all alpha-helical pr | 87.02 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 86.96 | |
| 2dqb_A | 376 | Deoxyguanosinetriphosphate triphosphohydrolase, P; | 86.8 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 86.69 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 84.64 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 84.01 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 83.44 | |
| 3bg2_A | 444 | DGTP triphosphohydrolase; structural genomics, NYS | 82.96 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 82.92 | |
| 1saz_A | 381 | Probable butyrate kinase 2; askha (acetate and sug | 82.77 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 81.93 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 81.88 | |
| 2yhw_A | 343 | Bifunctional UDP-N-acetylglucosamine 2-epimerase/N | 80.89 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 80.68 | |
| 3sk9_A | 265 | Putative uncharacterized protein TTHB187; crispr, | 80.36 |
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-87 Score=701.56 Aligned_cols=387 Identities=24% Similarity=0.384 Sum_probs=344.4
Q ss_pred CCCCccCCCCCeEEEEEecccceeeeEEEEeCCCcEEEEEeecceeeccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHc
Q 014133 3 TNTSYMQIPQTLFASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLMFRDIIQSH 82 (430)
Q Consensus 3 ~~~~~~~~~~~~~AvIDIGSNsirL~I~e~~~~~~~~~i~~~k~~vrLg~~~~~~g~ls~e~i~r~~~~L~~f~~~~~~~ 82 (430)
+.+|++ +++++|+|||||||+||+|+++. ++.++++++.+++||||++++.+|.|++++|+|++++|++|+++|++|
T Consensus 3 ~~~~~~--~~~~~AaIDiGSNSirL~I~~~~-~~~~~~l~~~k~~vrLg~g~~~~g~Ls~eai~r~~~~L~~f~~~~~~~ 79 (513)
T 1u6z_A 3 IHDKSP--RPQEFAAVDLGSNSFHMVIARVV-DGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGF 79 (513)
T ss_dssp -----------CEEEEEECSSCEEEEEEEEE-TTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccCc--cCCeEEEEEeccccEEEEEEEEc-CCeeEEEEeeEEEEeccCcccccCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 344443 34579999999999999999997 577999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeehHhhhcCChHHHHHHHHHHhCCceeeeChHHHHHHHHhhhhccCCCCCCceEEEEeCCCceEEEeeeC
Q 014133 83 NISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGVLQFLPVFDRLVLSVDIGGGSTEFVIGKR 162 (430)
Q Consensus 83 ~v~~~~i~~vATsA~R~A~N~~~fl~~i~~~tGl~i~vIsg~eEA~l~~~gv~~~~~~~~~~~lv~DIGGGStEl~~~~~ 162 (430)
+|+ +|++|||+|+|+|+|+++|+++|+++||++|+||||+|||+|+|+||.+.++..+ +++++||||||||++++++
T Consensus 80 ~v~--~v~~vATsA~R~A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~-~~lviDIGGGStEl~~~~~ 156 (513)
T 1u6z_A 80 SPA--SVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKG-RKLVIDIGGGSTELVIGEN 156 (513)
T ss_dssp CGG--GEEEEECHHHHHCTTHHHHHHHHTTTCSSCEEECCHHHHHHHHHHHHHHHSCCCS-CEEEEEECSSCEEEEEEET
T ss_pred CCC--EEEEEecHHHHcCcCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhccCCC-CEEEEEECCCcEEEEEEeC
Confidence 994 7999999999999999999999999999999999999999999999999887533 6999999999999999999
Q ss_pred CeEeeeeeeehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEEEeechhHHHHHHHHHc-CCCc
Q 014133 163 GKVVFCESVNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVAVGSSGTIRAIEKAVVS-GYDR 240 (430)
Q Consensus 163 ~~~~~~~Sl~lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~lig~gGt~~~l~~~~~~-~~~~ 240 (430)
+++..++|+|+|+||++++|..++ ++++++..+++|++..+.... ..++..++..+||+|||+++|+++... +|+.
T Consensus 157 ~~~~~~~Sl~lG~vrlte~f~~~~~~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~lvg~gGt~~~la~i~~~~~~~~ 234 (513)
T 1u6z_A 157 FEPILVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLT--WQFRIQGWNVAMGASGTIKAAHEVLMEMGEKD 234 (513)
T ss_dssp TEEEEEEEESCCHHHHHHHHSGGGBCCHHHHHHHHHHHHHHHTTTH--HHHHHHCCSEEEEESHHHHHHHHHHHHTTCSS
T ss_pred CeeeEEEEEeccHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHHH--HHhhhcCCCEEEEEChHHHHHHHHHHhCCCCC
Confidence 999999999999999999998764 588888999999999997642 233334556799999999999998643 4431
Q ss_pred ccccCCCCCCCCcccceeCHHHHHHHHHHHHcCCCChHHHhhcCCCCccchhhHHHHHHHHHHHHHHhCCCeEEECCcch
Q 014133 241 DFVDNVGDFGGCKRDWRLSRGELKGIVERLCCGGDGEVERVRRERFFKRRSEFIVAGAVLLDEIFELLGIEEMEVSGYGL 320 (430)
Q Consensus 241 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~~~gl~~~Rad~i~~g~~il~~l~~~~~~~~i~vs~~gl 320 (430)
. .++.+++.++++++..++.+ ++.+.+||+++|+|+|+||++|+.++|+.+++++++||+.||
T Consensus 235 --------------~-~i~~~~l~~~~~~l~~~~~~--~r~~~~gl~~~Rad~i~~g~~Il~~i~~~~~~~~i~vs~~gl 297 (513)
T 1u6z_A 235 --------------G-IITPERLEKLVKEVLRHRNF--ASLSLPGLSEERKTVFVPGLAILCGVFDALAIRELRLSDGAL 297 (513)
T ss_dssp --------------S-CBCHHHHHHHHHHHTTCSBG--GGCCCTTCCTTGGGTHHHHHHHHHHHHHHHTCSCBEECSCCH
T ss_pred --------------C-eecHHHHHHHHHHHHCCCHH--HHHhcCCCChhHHHHHHHHHHHHHHHHHHcCCCEEEECCCcH
Confidence 1 59999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCcchHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHhhhhccccchhhhhhcccCcchHH
Q 014133 321 GEGVVADSLAKVFDGYDLNANARWRSVVRLAMRFNNKKRVKAGAQCASIAKDIFEGLRKCDKLYNNQVKLIASFEDKDLE 400 (430)
Q Consensus 321 reGll~~~l~~~~~~~~~~~~~~~~s~~~la~ry~~~~~~~h~~~V~~~a~~LFd~l~~~h~l~~~~~~~~~~l~~~~r~ 400 (430)
|||++++++.+.. ..|++.+|++++++||++|. .|+++|+++|++|||+|++.|++. .++++|+
T Consensus 298 reGll~~~~~~~~-----~~d~~~~s~~~l~~ry~~d~--~ha~~V~~~a~~Lf~~l~~~~~l~---------~~~~~~~ 361 (513)
T 1u6z_A 298 REGVLYEMEGRFR-----HQDVRSRTASSLANQYHIDS--EQARRVLDTTMQMYEQWREQQPKL---------AHPQLEA 361 (513)
T ss_dssp HHHHHHHHHHHHT-----TCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHHHHHCGGG---------CCHHHHH
T ss_pred HHHHHHHHHHhcc-----cccHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHhhCcC---------CChhHHH
Confidence 9999999987632 23778899999999999987 999999999999999999998732 1346689
Q ss_pred HHHHHHHHhhhhcccCCCCcchhhhhhhcC
Q 014133 401 YLEAACLLHNIGHFTSKKGYHKQSCHIIMV 430 (430)
Q Consensus 401 lL~~Aa~LhdiG~~I~~~~h~~Hs~yiI~~ 430 (430)
||++||+|||||+|||+++||+||+|||+|
T Consensus 362 lL~~Aa~LhdiG~~I~~~~~~~Hs~yii~n 391 (513)
T 1u6z_A 362 LLRWAAMLHEVGLNINHSGLHRHSAYILQN 391 (513)
T ss_dssp HHHHHHHHTTTTTTTCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCCccccchhHHHHHhc
Confidence 999999999999999999999999999975
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
| >3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* | Back alignment and structure |
|---|
| >3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A* | Back alignment and structure |
|---|
| >3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A* | Back alignment and structure |
|---|
| >3rf0_A Exopolyphosphatase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, hydrolase; HET: MSE; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
| >4a57_A Nucleoside-triphosphatase 1; hydrolase; 2.00A {Toxoplasma gondii} PDB: 4a59_A* 4a5a_A* 4a5b_A 3agr_A | Back alignment and structure |
|---|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
| >2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
| >2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A | Back alignment and structure |
|---|
| >3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* | Back alignment and structure |
|---|
| >2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
| >2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
| >3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
| >3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
| >2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} | Back alignment and structure |
|---|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
| >3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
| >2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
| >2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} | Back alignment and structure |
|---|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
| >3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} | Back alignment and structure |
|---|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* | Back alignment and structure |
|---|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
| >2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A | Back alignment and structure |
|---|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
| >3sk9_A Putative uncharacterized protein TTHB187; crispr, CAS, HD domain, nuclease, hydrolase; 1.80A {Thermus thermophilus HB8} PDB: 3skd_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 430 | ||||
| d1u6za2 | 124 | c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escher | 3e-25 | |
| d1t6ca2 | 180 | c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquif | 5e-25 | |
| d1t6ca1 | 126 | c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex | 1e-24 | |
| d1u6za3 | 177 | c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Esche | 6e-24 | |
| d1u6za1 | 197 | a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-ter | 4e-13 |
| >d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Score = 97.7 bits (243), Expect = 3e-25
Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 3/125 (2%)
Query: 15 FASIDMGTSSFKLLIIRAYPNGKFLTIDTLKQPVILGRDLSSSCSISTQSQARSVESLLM 74
FA++D+G++SF ++I R G I LKQ V L L +S ++ R + L +
Sbjct: 2 FAAVDLGSNSFHMVIARVVD-GAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSL 60
Query: 75 FRDIIQSHNISRDHTRAVATAAVRAAENKDEFVECVREKVGFEVDVLTGEQEAKFVYMGV 134
F + +Q + V T +R A N +F++ + + + +++++G +EA+ ++MGV
Sbjct: 61 FAERLQGFS--PASVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGV 118
Query: 135 LQFLP 139
P
Sbjct: 119 EHTQP 123
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Length = 180 | Back information, alignment and structure |
|---|
| >d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Length = 126 | Back information, alignment and structure |
|---|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Length = 177 | Back information, alignment and structure |
|---|
| >d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]} Length = 197 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 100.0 | |
| d1t6ca1 | 126 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 100.0 | |
| d1u6za2 | 124 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 100.0 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 100.0 | |
| d1u6za1 | 197 | Exopolyphosphatase Ppx C-terminal domain {Escheric | 99.8 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 96.73 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 95.63 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 95.41 | |
| d3dtoa1 | 212 | Uncharacterized protein BH2835 {Bacillus haloduran | 95.01 | |
| d3b57a1 | 201 | Uncharacterized protein Lin1889 {Listeria innocua | 94.85 | |
| d2o6ia1 | 453 | Hypothetical protein EF1143 {Enterococcus faecalis | 94.77 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 94.32 | |
| d2pjqa1 | 215 | Uncharacterized protein LP2664 {Lactobacillus plan | 93.97 | |
| d2heka1 | 369 | Hypothetical protein aq_1910 {Aquifex aeolicus [Ta | 93.53 | |
| d2pq7a1 | 217 | Predicted hydrolase mes0020 {Uncultured thermotoga | 93.27 | |
| d3djba1 | 213 | Uncharacterized protein BT9727_1981 {Bacillus thur | 92.92 | |
| d2qgsa1 | 216 | Uncharacterized protein SE1688 {Staphylococcus epi | 92.26 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 91.6 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 91.36 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 86.34 | |
| d1xc3a1 | 118 | Putative fructokinase YhdR {Bacillus subtilis [Tax | 83.79 | |
| d1nbwa2 | 239 | ATPase domain of the glycerol dehydratase reactiva | 82.3 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 82.28 | |
| d1z05a3 | 128 | Transcriptional regulator VC2007 {Vibrio cholerae | 81.71 | |
| d2ap1a2 | 117 | Putative regulator protein YcfX {Salmonella typhim | 81.2 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 80.14 |
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=100.00 E-value=2.7e-36 Score=271.40 Aligned_cols=173 Identities=29% Similarity=0.361 Sum_probs=152.5
Q ss_pred CCceEEEEeCCCceEEEeeeCCeEeeeeeeehhHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHhchhhHHHHhcCCeEE
Q 014133 142 DRLVLSVDIGGGSTEFVIGKRGKVVFCESVNLGHVSLSEKFGTCS-GNFEEVLKMREYVRMVILEFGLVEKVKESGFEVA 220 (430)
Q Consensus 142 ~~~~lv~DIGGGStEl~~~~~~~~~~~~Sl~lG~vrl~e~f~~~~-~~~~~~~~l~~~i~~~l~~~~~~~~l~~~~~~~l 220 (430)
+++.+|+||||||||+++++++++....|||+|+|||+++|...+ +++++++.+++|++..+.... .....+
T Consensus 2 e~~~lviDIGGGStEli~~~~~~i~~~~Sl~lG~vrl~e~f~~~~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~l 74 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGKGYKVREVISLPIGIVNLTETFFKQDPPTEEEVKRFFEFLEKELSKVK-------KPVDTI 74 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEETTEEEEEEEECCCHHHHHHHHCCSSSCCHHHHHHHHHHHHHHHTTTC-------CCCSEE
T ss_pred CCCEEEEEeCCChHhhEEeeCCceeeEEEeecceEEeeccccCCCCCCHHHHHHHHHHHHHHHHhhc-------cccceE
Confidence 567999999999999999999999999999999999999998775 588888999999999886531 134679
Q ss_pred EeechhHHHHHHHHH--cCCCcccccCCCCCCCCcccceeCHHHHHHHHHHHHcCCCChHHHhh-cCCCCccchhhHHHH
Q 014133 221 VGSSGTIRAIEKAVV--SGYDRDFVDNVGDFGGCKRDWRLSRGELKGIVERLCCGGDGEVERVR-RERFFKRRSEFIVAG 297 (430)
Q Consensus 221 ig~gGt~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~~~~e~~~-~~gl~~~Rad~i~~g 297 (430)
||+|||+++|+++.. ..|+...+ |++.++.+++.++++++..++.+ +|.+ .+|++++|+|+|+||
T Consensus 75 ig~gGt~~~la~i~~~~~~~~~~~i----------~~~~l~~~~l~~~~~~l~~~~~~--er~~~~~gl~~~Radii~~g 142 (180)
T d1t6ca2 75 VGLGGTITTLAALEYNVYPYDPQKV----------HGKVLTYGQIKKWFDTFKEIPSE--ERSKRFRQVEDRRAKVILAG 142 (180)
T ss_dssp EEESHHHHHHHHHHTTCCSCCHHHH----------TTCEEEHHHHHHHHHHHTTSCHH--HHHHHSTTSCGGGTTTHHHH
T ss_pred EeeCCcHHHHHHHHHhcccCCcccc----------cCcEEcHHHHHhHHHHHHcCCHH--HHhhhccCCCchhhhhHHHH
Confidence 999999999999863 34655443 45799999999999999999988 8864 789999999999999
Q ss_pred HHHHHHHHHHhCCCeEEECCcchHHHHHHHHHhhhc
Q 014133 298 AVLLDEIFELLGIEEMEVSGYGLGEGVVADSLAKVF 333 (430)
Q Consensus 298 ~~il~~l~~~~~~~~i~vs~~glreGll~~~l~~~~ 333 (430)
++|+.++|+.++++++++|++|||||++++++.+..
T Consensus 143 ~~il~~i~~~~~~~~i~vs~~gLReG~l~~~l~~~~ 178 (180)
T d1t6ca2 143 IGIFLKTLEIFEKDCLIVSDWGLREGVLVSEVLKEN 178 (180)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999987643
|
| >d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
| >d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
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| >d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
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| >d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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| >d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} | Back information, alignment and structure |
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| >d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} | Back information, alignment and structure |
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| >d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} | Back information, alignment and structure |
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| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
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| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
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| >d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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| >d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
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