Citrus Sinensis ID: 014147

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
MAENNNTEIKKRKRMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFFQAF
cccccccccccccccccccEEEEcccccccccccccccHHHHHHcccccccccccccccccEEEEcccccEEEccccccHHHHHHHccccccHHHHHHHccccccEEEEEcccccccccccccHHHHHHHHHcccccccccccccEEEEEccHHHHHcccccHHHHHHHHcccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHccEEcccccEEEEccccccccccccEEEEEEcccccEEcccccccccHHHHHHccccccccccccccccccccEEEEccccccEEEEEEEEccccEEEEccccccEEEEEEccEEEEEEccccEEEEEcEEEEEEEcccEEEEEEccccEEEEEEEccccccccc
ccccccccHHcHHcccccEEEEccccccccccccccHHHHHHHHHcccccccccccccEEEEccccccccccEccccccHHHHHHHcHHHHcHHHHHHHcccccEEEEEEEEcccccEEEcccHHHHHHHHHHccccccccccccEEEEEcccEEEEEEEccHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHEHHHHHcEEEEEEccccEEEEcccccEEEEEEEEEEEEEcccccEEEEcccccccHHHHHHHcccccccccccccccccccEEEcccccccEEEEEEEEccccEEEEccccccEEEEEEEcEEEEEEccccEEEEcccEEEEEccccEEEEEEccccEEEEEEcccHHHHHcc
MAENNNTEIKKRKRMINKPLRLQCAvknynwgivgskshvSRLFclnsgthinpnepyaefwigthesgasfldhgglSLKEWISknpdvlgdrvlnkwggdlPFLFKVLSVEKALSIQAHPDKELARTlhksqpslysdenhkpEMALALTEFEALCGFISLKELRNvlctvpeivdlvggadaeqcfpvnefgrsqEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKlnrgealciganephayirgECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRrqgfpqilkgislnpyttrylppfeefevdccvipqaaslvfpsvagpslFLFIsgngtlsagfskeQIVEEgevlfvpayMEFTIASQSKELHLYragvnssffqaf
maennnteikkrkrminkplrlqCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSqillsskdEICEIISRLkwrlnlekkkrqltDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFFQAF
MAENNNTEIKKRKRMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFFQAF
***************INKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSI*****************************ALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVN*******
*****************KPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFFQAF
**********KRKRMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFFQAF
*******EIKKRKRMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFFQAF
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MAENNNTEIKKRKRMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNxxxxxxxxxxxxxxxxxxxxxYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFFQAF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query430 2.2.26 [Sep-21-2011]
Q9M884432 Mannose-6-phosphate isome yes no 0.932 0.928 0.585 1e-138
Q9FZH5441 Mannose-6-phosphate isome no no 0.951 0.927 0.563 1e-137
O43014412 Mannose-6-phosphate isome yes no 0.909 0.949 0.373 4e-73
Q9GP38433 Probable mannose-6-phosph N/A no 0.916 0.909 0.402 1e-72
P29952429 Mannose-6-phosphate isome yes no 0.934 0.937 0.375 1e-72
Q54PA0452 Probable mannose-6-phosph yes no 0.904 0.860 0.383 7e-72
P34948441 Mannose-6-phosphate isome N/A no 0.934 0.911 0.377 2e-71
Q3SZI0423 Mannose-6-phosphate isome yes no 0.916 0.931 0.389 4e-69
P34949423 Mannose-6-phosphate isome yes no 0.925 0.940 0.385 8e-69
A5A6K3423 Mannose-6-phosphate isome yes no 0.918 0.933 0.387 8e-69
>sp|Q9M884|MPI1_ARATH Mannose-6-phosphate isomerase 1 OS=Arabidopsis thaliana GN=PMI1 PE=1 SV=1 Back     alignment and function desciption
 Score =  491 bits (1264), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/408 (58%), Positives = 307/408 (75%), Gaps = 7/408 (1%)

Query: 24  CAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHG----GLS 79
           C+VK+Y+WG +GS S V R++  NS   I+P  PYAE W+GTHESG S+L+      G++
Sbjct: 25  CSVKDYDWGKIGSDSLVYRVYAANSDYEIDPTRPYAELWMGTHESGPSYLEDADGSNGVT 84

Query: 80  LKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYS 139
           L+ WI++NP  LG+RVL KWG DLPFLFKVLSV + LSIQAHPDK+LA+ +HK+ P+LY 
Sbjct: 85  LRSWITENPKSLGNRVLEKWGCDLPFLFKVLSVARPLSIQAHPDKKLAKKMHKAHPNLYK 144

Query: 140 DENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGRSQE 199
           D+NHKPEMALA T+FEALCGFI L+EL++V+  +PEI +LVG  +A Q F + E    ++
Sbjct: 145 DDNHKPEMALAYTQFEALCGFIPLQELKSVIRAIPEIEELVGSEEANQVFCITEHDE-EK 203

Query: 200 VKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDAGV 259
           VK++V +IF+ ++ +  D   +I+S+LK RL++E ++RQLTDKE LVL+LE QYP+D GV
Sbjct: 204 VKSVVRTIFTLLMSADADTTKKIVSKLKRRLHMESQERQLTDKERLVLKLEKQYPNDIGV 263

Query: 260 LAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSM 319
           ++AF  NYVKLN GEAL +GANEPHAY+ GEC+E MATSDNVVRAGLTSK  DIQTL SM
Sbjct: 264 ISAFFFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNVVRAGLTSKPLDIQTLCSM 323

Query: 320 LNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGN 379
           L+ + G+P+ILKG  + PY TRYLPPFEEFEVD C +P  AS VFPSV GPSL L + G 
Sbjct: 324 LSYKLGYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGASTVFPSVPGPSLLLVLQGE 383

Query: 380 GTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSFF 427
           G +S   S + I   G+VLFVPA  E  + S S +L LYRAG+NS F 
Sbjct: 384 GRMSTEASADGI-SMGDVLFVPADTEIHLRSSS-DLKLYRAGINSRFL 429
Involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions. Involved in the ascorbic acid (AsA) biosynthesis. Required during the endosperm development.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 8
>sp|Q9FZH5|MPI2_ARATH Mannose-6-phosphate isomerase 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1 Back     alignment and function description
>sp|O43014|MPI_SCHPO Mannose-6-phosphate isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmi40 PE=3 SV=1 Back     alignment and function description
>sp|Q9GP38|MPI_ECHMU Probable mannose-6-phosphate isomerase OS=Echinococcus multilocularis GN=PMIH PE=2 SV=1 Back     alignment and function description
>sp|P29952|MPI_YEAST Mannose-6-phosphate isomerase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PMI40 PE=1 SV=4 Back     alignment and function description
>sp|Q54PA0|MPI_DICDI Probable mannose-6-phosphate isomerase OS=Dictyostelium discoideum GN=mpi PE=3 SV=1 Back     alignment and function description
>sp|P34948|MPI_CANAL Mannose-6-phosphate isomerase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PMI1 PE=1 SV=2 Back     alignment and function description
>sp|Q3SZI0|MPI_BOVIN Mannose-6-phosphate isomerase OS=Bos taurus GN=MPI PE=2 SV=3 Back     alignment and function description
>sp|P34949|MPI_HUMAN Mannose-6-phosphate isomerase OS=Homo sapiens GN=MPI PE=1 SV=2 Back     alignment and function description
>sp|A5A6K3|MPI_PANTR Mannose-6-phosphate isomerase OS=Pan troglodytes GN=MPI PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
255572106446 mannose-6-phosphate isomerase, putative 0.983 0.948 0.665 1e-168
359472682427 PREDICTED: LOW QUALITY PROTEIN: probable 0.944 0.950 0.657 1e-156
449451854451 PREDICTED: mannose-6-phosphate isomerase 0.962 0.917 0.634 1e-155
225452055420 PREDICTED: mannose-6-phosphate isomerase 0.955 0.978 0.632 1e-153
147841344455 hypothetical protein VITISV_011365 [Viti 0.955 0.903 0.632 1e-153
60617303428 phosphomannose isomerase [Cyamopsis tetr 0.948 0.953 0.622 1e-151
356569059421 PREDICTED: mannose-6-phosphate isomerase 0.948 0.969 0.618 1e-151
356527492421 PREDICTED: mannose-6-phosphate isomerase 0.948 0.969 0.613 1e-150
224079321440 predicted protein [Populus trichocarpa] 0.948 0.927 0.615 1e-146
449531838393 PREDICTED: mannose-6-phosphate isomerase 0.874 0.956 0.647 1e-143
>gi|255572106|ref|XP_002526993.1| mannose-6-phosphate isomerase, putative [Ricinus communis] gi|223533628|gb|EEF35365.1| mannose-6-phosphate isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/431 (66%), Positives = 349/431 (80%), Gaps = 8/431 (1%)

Query: 3   ENNNTEIKKRKRMINKPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFW 62
           E N+  +K+ K   N P RL+C+V NY+WGIVG  S V+RLF LNSG+ I+P +PYAEFW
Sbjct: 15  ETNDELLKQHK---NVPKRLKCSVHNYDWGIVGKNSQVARLFSLNSGSDIDPGKPYAEFW 71

Query: 63  IGTHESGASFLDHG----GLSLKEWISKNP-DVLGDRVLNKWGGDLPFLFKVLSVEKALS 117
           IGTH+SG SF+DHG     LSLK+WI +NP  VLGD+V+ KWGGDLPFLFKV+SV KALS
Sbjct: 72  IGTHKSGPSFVDHGNGNGSLSLKKWILENPYKVLGDKVMKKWGGDLPFLFKVISVGKALS 131

Query: 118 IQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIV 177
           IQAHPDKELA+ LHK+QPS+Y D+NHKPEMALALTEFEALCGFIS+KEL+N+LCT PEIV
Sbjct: 132 IQAHPDKELAKALHKAQPSIYKDDNHKPEMALALTEFEALCGFISVKELKNMLCTFPEIV 191

Query: 178 DLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKR 237
           +LVG ++ +Q   +NE  R  + K  ++SIFSQI+LSS DEICE+IS +K RL+LE ++R
Sbjct: 192 ELVGDSNVKQFLHMNEQDRDDKGKTFLQSIFSQIVLSSSDEICELISNMKRRLHLEMQER 251

Query: 238 QLTDKEMLVLRLEGQYPDDAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMAT 297
           +LTDKE LVLRLE QYP D GV+AAFLLNYVKL+ GEAL + ANEPHAY+ GECIECMA 
Sbjct: 252 ELTDKEWLVLRLESQYPADVGVMAAFLLNYVKLSPGEALYLEANEPHAYVGGECIECMAN 311

Query: 298 SDNVVRAGLTSKHRDIQTLFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIP 357
           SDNVVRAGLT K RD+QTL SML  RQGFP+IL+G+ L+P+TTRY PP +EFEVD  ++P
Sbjct: 312 SDNVVRAGLTPKQRDVQTLLSMLKYRQGFPEILRGVPLSPFTTRYRPPLDEFEVDLSILP 371

Query: 358 QAASLVFPSVAGPSLFLFISGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHL 417
           +AAS+VFPS+ GPSLFL I G GT+ AGF   +IV+EGE  FVPAY E  I ++S +LHL
Sbjct: 372 EAASVVFPSIPGPSLFLIIMGRGTIDAGFCDGKIVKEGEAYFVPAYTEIRITAKSTKLHL 431

Query: 418 YRAGVNSSFFQ 428
           YRAGVNS F +
Sbjct: 432 YRAGVNSRFLK 442

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359472682|ref|XP_003631184.1| PREDICTED: LOW QUALITY PROTEIN: probable mannose-6-phosphate isomerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449451854|ref|XP_004143675.1| PREDICTED: mannose-6-phosphate isomerase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225452055|ref|XP_002283926.1| PREDICTED: mannose-6-phosphate isomerase [Vitis vinifera] Back     alignment and taxonomy information
>gi|147841344|emb|CAN60179.1| hypothetical protein VITISV_011365 [Vitis vinifera] Back     alignment and taxonomy information
>gi|60617303|gb|AAX31279.1| phosphomannose isomerase [Cyamopsis tetragonoloba] Back     alignment and taxonomy information
>gi|356569059|ref|XP_003552724.1| PREDICTED: mannose-6-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|356527492|ref|XP_003532343.1| PREDICTED: mannose-6-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|224079321|ref|XP_002305820.1| predicted protein [Populus trichocarpa] gi|222848784|gb|EEE86331.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449531838|ref|XP_004172892.1| PREDICTED: mannose-6-phosphate isomerase 2-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
TAIR|locus:2076864432 MEE31 "MATERNAL EFFECT EMBRYO 0.937 0.932 0.587 2.9e-126
TAIR|locus:2019748441 DIN9 "DARK INDUCIBLE 9" [Arabi 0.946 0.922 0.570 8.9e-125
DICTYBASE|DDB_G0284685452 mpi "mannose-6-phosphate isome 0.958 0.911 0.378 3.5e-68
POMBASE|SPBC2G2.16412 SPBC2G2.16 "mannose-6-phosphat 0.916 0.956 0.378 3.5e-68
SGD|S000000805429 PMI40 "Mannose-6-phosphate iso 0.941 0.944 0.386 1.2e-67
UNIPROTKB|F1P6B2567 MPI "Mannose-6-phosphate isome 0.925 0.701 0.402 1.9e-67
UNIPROTKB|P34949423 MPI "Mannose-6-phosphate isome 0.925 0.940 0.393 3.6e-66
MGI|MGI:97075423 Mpi "mannose phosphate isomera 0.923 0.938 0.389 4.5e-66
UNIPROTKB|F1SJ30423 MPI "Uncharacterized protein" 0.920 0.936 0.391 5.8e-66
UNIPROTKB|Q3SZI0423 MPI "Mannose-6-phosphate isome 0.920 0.936 0.396 7.4e-66
TAIR|locus:2076864 MEE31 "MATERNAL EFFECT EMBRYO ARREST 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 241/410 (58%), Positives = 310/410 (75%)

Query:    21 RLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHG---- 76
             RL+C+VK+Y+WG +GS S V R++  NS   I+P  PYAE W+GTHESG S+L+      
Sbjct:    22 RLRCSVKDYDWGKIGSDSLVYRVYAANSDYEIDPTRPYAELWMGTHESGPSYLEDADGSN 81

Query:    77 GLSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPS 136
             G++L+ WI++NP  LG+RVL KWG DLPFLFKVLSV + LSIQAHPDK+LA+ +HK+ P+
Sbjct:    82 GVTLRSWITENPKSLGNRVLEKWGCDLPFLFKVLSVARPLSIQAHPDKKLAKKMHKAHPN 141

Query:   137 LYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFGR 196
             LY D+NHKPEMALA T+FEALCGFI L+EL++V+  +PEI +LVG  +A Q F + E   
Sbjct:   142 LYKDDNHKPEMALAYTQFEALCGFIPLQELKSVIRAIPEIEELVGSEEANQVFCITEHDE 201

Query:   197 SQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDD 256
              ++VK++V +IF+ ++ +  D   +I+S+LK RL++E ++RQLTDKE LVL+LE QYP+D
Sbjct:   202 -EKVKSVVRTIFTLLMSADADTTKKIVSKLKRRLHMESQERQLTDKERLVLKLEKQYPND 260

Query:   257 AGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTL 316
              GV++AF  NYVKLN GEAL +GANEPHAY+ GEC+E MATSDNVVRAGLTSK  DIQTL
Sbjct:   261 IGVISAFFFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNVVRAGLTSKPLDIQTL 320

Query:   317 FSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFI 376
              SML+ + G+P+ILKG  + PY TRYLPPFEEFEVD C +P  AS VFPSV GPSL L +
Sbjct:   321 CSMLSYKLGYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGASTVFPSVPGPSLLLVL 380

Query:   377 SGNGTLSAGFSKEQIVEEGEVLFVPAYMEFTIASQSKELHLYRAGVNSSF 426
              G G +S   S + I   G+VLFVPA  E  + S S +L LYRAG+NS F
Sbjct:   381 QGEGRMSTEASADGI-SMGDVLFVPADTEIHLRSSS-DLKLYRAGINSRF 428
GO:0004476 "mannose-6-phosphate isomerase activity" evidence=IEA;ISS;IDA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=ISS
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0009416 "response to light stimulus" evidence=IEP
GO:0010043 "response to zinc ion" evidence=IEP
GO:0032025 "response to cobalt ion" evidence=IEP
GO:0033591 "response to L-ascorbic acid" evidence=IEP
GO:0046686 "response to cadmium ion" evidence=IEP
TAIR|locus:2019748 DIN9 "DARK INDUCIBLE 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284685 mpi "mannose-6-phosphate isomerase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPBC2G2.16 SPBC2G2.16 "mannose-6-phosphate isomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000000805 PMI40 "Mannose-6-phosphate isomerase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6B2 MPI "Mannose-6-phosphate isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P34949 MPI "Mannose-6-phosphate isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:97075 Mpi "mannose phosphate isomerase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SJ30 MPI "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZI0 MPI "Mannose-6-phosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M884MPI1_ARATH5, ., 3, ., 1, ., 80.58570.93250.9282yesno
Q75AB5MPI_ASHGO5, ., 3, ., 1, ., 80.37060.94180.9440yesno
Q54PA0MPI_DICDI5, ., 3, ., 1, ., 80.38320.90460.8606yesno
P34650MPI_CAEEL5, ., 3, ., 1, ., 80.36410.85580.8846yesno
O43014MPI_SCHPO5, ., 3, ., 1, ., 80.37340.90930.9490yesno
P34949MPI_HUMAN5, ., 3, ., 1, ., 80.38590.92550.9408yesno
Q9HFU4MPI_CRYNJ5, ., 3, ., 1, ., 80.39080.92790.9193yesno
Q3SZI0MPI_BOVIN5, ., 3, ., 1, ., 80.38940.91620.9314yesno
Q76IQ2MPI_CANGA5, ., 3, ., 1, ., 80.35940.91620.9184yesno
Q66WM4MPI_ASPFU5, ., 3, ., 1, ., 80.36420.91620.8621yesno
P29951MPI_EMENI5, ., 3, ., 1, ., 80.35910.90.8394yesno
P29952MPI_YEAST5, ., 3, ., 1, ., 80.3750.93480.9370yesno
Q68FX1MPI_RAT5, ., 3, ., 1, ., 80.39710.91160.9267yesno
Q924M7MPI_MOUSE5, ., 3, ., 1, ., 80.38800.90690.9219yesno
A5A6K3MPI_PANTR5, ., 3, ., 1, ., 80.38790.91860.9338yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1.80.824
3rd Layer5.3.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
PLN02288394 PLN02288, PLN02288, mannose-6-phosphate isomerase 0.0
pfam01238373 pfam01238, PMI_typeI, Phosphomannose isomerase typ 6e-98
PRK15131389 PRK15131, PRK15131, mannose-6-phosphate isomerase; 6e-50
COG1482312 COG1482, ManA, Phosphomannose isomerase [Carbohydr 2e-29
COG1482312 COG1482, ManA, Phosphomannose isomerase [Carbohydr 6e-29
TIGR00218303 TIGR00218, manA, mannose-6-phosphate isomerase, cl 2e-19
TIGR00218303 TIGR00218, manA, mannose-6-phosphate isomerase, cl 5e-13
>gnl|CDD|215162 PLN02288, PLN02288, mannose-6-phosphate isomerase Back     alignment and domain information 
 Score =  635 bits (1640), Expect = 0.0
 Identities = 242/394 (61%), Positives = 307/394 (77%), Gaps = 4/394 (1%)

Query: 19  PLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNEPYAEFWIGTHESGASFLDHGG- 77
            LRL+CAV+NY+WG +GS+S V+RL   NSG+ ++P++PYAE W+GTH SG SF+   G 
Sbjct: 1   MLRLRCAVQNYDWGRIGSESEVARLAAANSGSDVDPDKPYAELWMGTHPSGPSFVVATGK 60

Query: 78  --LSLKEWISKNPDVLGDRVLNKWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQP 135
             + LKEWI++NP  LGDRV+ +WGGDLPFLFKVLSV KALSIQAHPDK+LA  LH  QP
Sbjct: 61  GSVLLKEWIAENPAALGDRVVERWGGDLPFLFKVLSVAKALSIQAHPDKKLAEKLHAEQP 120

Query: 136 SLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPVNEFG 195
           ++Y D+NHKPEMALALTEFEALCGF++++EL+ VL TVPE+ +LVG   A+Q   + E  
Sbjct: 121 NVYKDDNHKPEMALALTEFEALCGFVTIQELKAVLRTVPELRELVGSEAADQLLALPEHD 180

Query: 196 RSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPD 255
             ++VK+++ S F+ ++ +SKD + E +S+LK RL+ E + R+LTDKE LVLRLE QYP 
Sbjct: 181 GEEDVKSVLRSAFTALMTASKDVVTEAVSKLKARLHAESQARELTDKEELVLRLEKQYPG 240

Query: 256 DAGVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQT 315
           D GVL+AF LNYVKLN GEAL +GANEPHAY+ GECIECMATSDNVVRAGLT K RD+QT
Sbjct: 241 DVGVLSAFFLNYVKLNPGEALYLGANEPHAYLSGECIECMATSDNVVRAGLTPKFRDVQT 300

Query: 316 LFSMLNRRQGFPQILKGISLNPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLF 375
           L SML  +QGFP+IL G+ ++PYTTRYLPPF+EFEVD C +P  AS+VFP+V GPS+FL 
Sbjct: 301 LCSMLTYKQGFPEILTGVPVDPYTTRYLPPFDEFEVDHCDVPPGASVVFPAVPGPSVFLV 360

Query: 376 ISGNGTLSAGFSKEQ-IVEEGEVLFVPAYMEFTI 408
           I G G LS G S++    + G+V FVPA  E  +
Sbjct: 361 IEGEGVLSTGSSEDGTAAKRGDVFFVPAGTEIHV 394

Length = 394
>gnl|CDD|216382 pfam01238, PMI_typeI, Phosphomannose isomerase type I Back     alignment and domain information
>gnl|CDD|185085 PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional Back     alignment and domain information
>gnl|CDD|224399 COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|224399 COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|232879 TIGR00218, manA, mannose-6-phosphate isomerase, class I Back     alignment and domain information
>gnl|CDD|232879 TIGR00218, manA, mannose-6-phosphate isomerase, class I Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 430
KOG2757411 consensus Mannose-6-phosphate isomerase [Carbohydr 100.0
PLN02288394 mannose-6-phosphate isomerase 100.0
PRK15131389 mannose-6-phosphate isomerase; Provisional 100.0
PF01238373 PMI_typeI: Phosphomannose isomerase type I; InterP 100.0
COG1482312 ManA Phosphomannose isomerase [Carbohydrate transp 100.0
TIGR00218302 manA mannose-6-phosphate isomerase, class I. The n 100.0
PRK11171266 hypothetical protein; Provisional 98.09
TIGR03214260 ura-cupin putative allantoin catabolism protein. T 97.74
TIGR03404367 bicupin_oxalic bicupin, oxalate decarboxylase fami 97.73
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 97.61
PRK13290125 ectC L-ectoine synthase; Reviewed 97.47
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 97.45
PF01050151 MannoseP_isomer: Mannose-6-phosphate isomerase; In 97.23
PF1169985 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B. 96.86
COG1917131 Uncharacterized conserved protein, contains double 96.69
PF01050151 MannoseP_isomer: Mannose-6-phosphate isomerase; In 96.53
TIGR02272335 gentisate_1_2 gentisate 1,2-dioxygenase. This fami 96.42
PRK15460478 cpsB mannose-1-phosphate guanyltransferase; Provis 96.2
PF0589974 Cupin_3: Protein of unknown function (DUF861); Int 96.14
PF06249152 EutQ: Ethanolamine utilisation protein EutQ; Inter 96.09
TIGR03214 260 ura-cupin putative allantoin catabolism protein. T 96.06
COG4297163 Uncharacterized protein containing double-stranded 95.94
smart00835146 Cupin_1 Cupin. This family represents the conserve 95.91
PF02311136 AraC_binding: AraC-like ligand binding domain; Int 95.91
TIGR01479468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 95.86
PRK11171 266 hypothetical protein; Provisional 95.78
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 95.47
PF00190144 Cupin_1: Cupin; InterPro: IPR006045 This family re 95.27
COG4101142 Predicted mannose-6-phosphate isomerase [Carbohydr 94.33
PF02041167 Auxin_BP: Auxin binding protein; InterPro: IPR0005 94.28
PF06339126 Ectoine_synth: Ectoine synthase; InterPro: IPR0104 93.99
PF04962 261 KduI: KduI/IolB family; InterPro: IPR021120 The Kd 93.82
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 93.45
COG3718 270 IolB Uncharacterized enzyme involved in inositol m 93.12
COG4766176 EutQ Ethanolamine utilization protein [Amino acid 92.88
PRK15457233 ethanolamine utilization protein EutQ; Provisional 92.6
TIGR03404 367 bicupin_oxalic bicupin, oxalate decarboxylase fami 92.33
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 91.99
COG3435351 Gentisate 1,2-dioxygenase [Secondary metabolites b 91.57
PLN00212 493 glutelin; Provisional 91.57
COG2140209 Thermophilic glucose-6-phosphate isomerase and rel 91.47
PF12852186 Cupin_6: Cupin 90.9
PRK04190191 glucose-6-phosphate isomerase; Provisional 90.74
COG3257 264 GlxB Uncharacterized protein, possibly involved in 90.39
PRK13264177 3-hydroxyanthranilate 3,4-dioxygenase; Provisional 89.92
COG3450116 Predicted enzyme of the cupin superfamily [General 89.75
TIGR03037159 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase 89.22
PRK13501 290 transcriptional activator RhaR; Provisional 88.91
COG1917131 Uncharacterized conserved protein, contains double 88.71
PF1297391 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_ 88.25
PRK00924 276 5-keto-4-deoxyuronate isomerase; Provisional 88.22
PRK1057994 hypothetical protein; Provisional 87.28
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 87.25
PF14525172 AraC_binding_2: AraC-binding-like domain 87.15
PF0686594 DUF1255: Protein of unknown function (DUF1255); In 87.06
COG3837161 Uncharacterized conserved protein, contains double 86.71
PF02311136 AraC_binding: AraC-like ligand binding domain; Int 86.67
PRK13502 282 transcriptional activator RhaR; Provisional 86.28
PRK13290125 ectC L-ectoine synthase; Reviewed 86.02
PLN00212493 glutelin; Provisional 85.94
TIGR02272 335 gentisate_1_2 gentisate 1,2-dioxygenase. This fami 85.25
PF05726104 Pirin_C: Pirin C-terminal cupin domain; InterPro: 85.15
TIGR01479468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 85.07
PRK13500 312 transcriptional activator RhaR; Provisional 85.0
PRK13503 278 transcriptional activator RhaS; Provisional 84.99
PRK15460478 cpsB mannose-1-phosphate guanyltransferase; Provis 84.97
PF1114263 DUF2917: Protein of unknown function (DUF2917); In 84.27
TIGR03037159 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase 83.49
PF00190144 Cupin_1: Cupin; InterPro: IPR006045 This family re 83.34
PF06560182 GPI: Glucose-6-phosphate isomerase (GPI); InterPro 82.87
PF08007319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 82.74
PRK10296 278 DNA-binding transcriptional regulator ChbR; Provis 82.54
PRK13264177 3-hydroxyanthranilate 3,4-dioxygenase; Provisional 81.7
PRK09943185 DNA-binding transcriptional repressor PuuR; Provis 80.71
COG4101142 Predicted mannose-6-phosphate isomerase [Carbohydr 80.62
PHA02984 286 hypothetical protein; Provisional 80.49
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-112  Score=822.96  Aligned_cols=406  Identities=47%  Similarity=0.802  Sum_probs=374.9

Q ss_pred             CEEeecccccccCCCCCCcchHhhhh-hcCCCCCCCCCCCceEEEEeecCCCceeecCCCcchHHHHhhCCCccCchhhh
Q 014147           19 PLRLQCAVKNYNWGIVGSKSHVSRLF-CLNSGTHINPNEPYAEFWIGTHESGASFLDHGGLSLKEWISKNPDVLGDRVLN   97 (430)
Q Consensus        19 ~~rL~p~~~~y~WGg~~~~s~l~~l~-~~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~g~~~L~~~i~~~p~~LG~~~~~   97 (430)
                      ++||+|.+|+|.||+.|..|+++||+ .++++++|+.++||||+||||||+|||.+...+.+|+++|++||+.+|.++.+
T Consensus         1 l~rL~c~Vk~Y~WGk~G~~S~varlaaa~d~~~~id~~~PYAElWMGTH~~Gps~v~~~~~tL~~~l~~nP~~lg~~v~~   80 (411)
T KOG2757|consen    1 LFRLKCHVKQYAWGKKGSESLVARLAAAGDPSFQIDQDKPYAELWMGTHPSGPSHVKETGETLSQWLAKNPELLGNKVAD   80 (411)
T ss_pred             CceeeeeeeeccccccCcHHHHHHHHHcCCCccccCCCCchHHhhcccCCCccHhhhhccccHHHHHhhChhhhcchhHh
Confidence            57899999999999999999999999 56689999999999999999999999997555459999999999999999999


Q ss_pred             hcCCCCCceeeeeccCCCCceeccCChHHHHhhcccCCCCCCCCCCCceeEEeccchhhhcCCCchHHHHHhhcCCchHH
Q 014147           98 KWGGDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIV  177 (430)
Q Consensus        98 ~fg~~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ei~~~l~~~p~l~  177 (430)
                      +||.+|||||||||++++||||+||||++|+++|.++|.+|+|+||||||+||||+|+++|||||.+||.++|+++|||+
T Consensus        81 k~~~~LpFLFKVLSI~k~LSIQaHP~K~lak~LH~~dP~~YpDdNHKPEmAiAlT~Fe~LcGFrp~~eI~~~l~~~pe~~  160 (411)
T KOG2757|consen   81 KFGCDLPFLFKVLSINKPLSIQAHPNKELAKKLHKTDPKHYPDDNHKPEMAIALTPFEALCGFRPLEEIKQFLDTIPELR  160 (411)
T ss_pred             hcCCCCceeeeEeeecceeeeeecCCHHHHHHHhhhCcccCCCCCCCchheeecchHhhhhCccCHHHHHHHHHhChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCccccccCcccccCCchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHhcCCCCc
Q 014147          178 DLVGGADAEQCFPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEMLVLRLEGQYPDDA  257 (430)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~yP~D~  257 (430)
                      +++|.+++.|+.+..+- .++..+..|+.+|+.+|..+.+++++++.+|++++..+.+.....+..++|++|++|||||+
T Consensus       161 ~LvGeEa~~q~~~~~~~-e~e~~~~~l~~~Fs~lM~~~~~~i~~~v~~L~~r~~~~~~~~~~~d~~eli~~l~kqfP~DI  239 (411)
T KOG2757|consen  161 ELVGEEAARQLKDLTSH-EDEDSKKVLKLCFSRLMKAEENVIKIQVSKLVKRLQNELNGFNLTDLEELILKLNKQFPGDI  239 (411)
T ss_pred             HHhhHHHHHHHHhhccc-hhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhccccccCcccHHHHHHHHHhhCCCcc
Confidence            99999988887554431 12457889999999999999999999999999999886554344568899999999999999


Q ss_pred             eehhhhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccCCCC--ccccccccc
Q 014147          258 GVLAAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRRQGF--PQILKGISL  335 (430)
Q Consensus       258 G~~~~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~~~~--~~~~~~~~~  335 (430)
                      |+|+++|||++.|+|||++|+.|+.||||++|+|+||||+||||||+|+|||++|+++|++||+|+...  |..+.....
T Consensus       240 Gvfs~~FlN~~~L~PGEA~yL~AnepHAYlsGdcvECMA~SDNvIRAGlTPK~~Dv~tL~smL~Y~~~~~~p~~~~~~~~  319 (411)
T KOG2757|consen  240 GVFSPFFLNYVRLNPGEAIYLEANEPHAYLSGDCVECMACSDNVIRAGLTPKYIDVDTLCSMLTYKLTEQQPKLFPRSRL  319 (411)
T ss_pred             eeeeHhhhhheecCCCceeeecCCCcceeecCceeEEecccCceeeccCCCccccHHHHHhHhcccccccccccCCccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999874  333333345


Q ss_pred             CCceEEeCCCCCceEEEEEEecCCCeEEecCCCCeEEEEEEcCcEEEEeC-CcceEEeccccEEEEeCCCeEEEEecCcc
Q 014147          336 NPYTTRYLPPFEEFEVDCCVIPQAASLVFPSVAGPSLFLFISGNGTLSAG-FSKEQIVEEGEVLFVPAYMEFTIASQSKE  414 (430)
Q Consensus       336 ~~~~~~y~~~~~~F~v~~~~~~~g~~~~~~~~~~~~il~v~~G~~~i~~~-~~~~~~l~~Ge~~fIpa~~~~~i~~~~~~  414 (430)
                      ++++.+|.||+++|+|.+++++.|+++.++..+++||++|++|+++++.+ +. .+.+.+|+++||||+..+++++++..
T Consensus       320 ~~~~~~Y~Ppi~eF~v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t~~-~~~v~rG~V~fI~a~~~i~~~~~sd~  398 (411)
T KOG2757|consen  320 DGYVLLYDPPIEEFAVLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDTDS-KILVNRGDVLFIPANHPIHLSSSSDP  398 (411)
T ss_pred             CCceeEeCCCCcceeEEEeecCCCceEEeecCCCceEEEEEecceEEecCCCC-ceeeccCcEEEEcCCCCceeeccCcc
Confidence            68899999999999999999999999999999999999999999999987 45 89999999999999999999997667


Q ss_pred             EEEEEEecCCCC
Q 014147          415 LHLYRAGVNSSF  426 (430)
Q Consensus       415 ~~~~~a~~~~~~  426 (430)
                      +.+|||++++++
T Consensus       399 ~~~yrAf~~~r~  410 (411)
T KOG2757|consen  399 FLGYRAFSNSRF  410 (411)
T ss_pred             eeeeeccccccC
Confidence            999999999864

>PLN02288 mannose-6-phosphate isomerase Back     alignment and domain information
>PRK15131 mannose-6-phosphate isomerase; Provisional Back     alignment and domain information
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5 Back     alignment and domain information
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00218 manA mannose-6-phosphate isomerase, class I Back     alignment and domain information
>PRK11171 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03214 ura-cupin putative allantoin catabolism protein Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5 Back     alignment and domain information
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5 Back     alignment and domain information
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown Back     alignment and domain information
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine Back     alignment and domain information
>TIGR03214 ura-cupin putative allantoin catabolism protein Back     alignment and domain information
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown] Back     alignment and domain information
>smart00835 Cupin_1 Cupin Back     alignment and domain information
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>PRK11171 hypothetical protein; Provisional Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) Back     alignment and domain information
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER) Back     alignment and domain information
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins Back     alignment and domain information
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB) Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15457 ethanolamine utilization protein EutQ; Provisional Back     alignment and domain information
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN00212 glutelin; Provisional Back     alignment and domain information
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>PF12852 Cupin_6: Cupin Back     alignment and domain information
>PRK04190 glucose-6-phosphate isomerase; Provisional Back     alignment and domain information
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only] Back     alignment and domain information
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional Back     alignment and domain information
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only] Back     alignment and domain information
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase Back     alignment and domain information
>PRK13501 transcriptional activator RhaR; Provisional Back     alignment and domain information
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A Back     alignment and domain information
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional Back     alignment and domain information
>PRK10579 hypothetical protein; Provisional Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>PF14525 AraC_binding_2: AraC-binding-like domain Back     alignment and domain information
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length Back     alignment and domain information
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown] Back     alignment and domain information
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC Back     alignment and domain information
>PRK13502 transcriptional activator RhaR; Provisional Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information
>PLN00212 glutelin; Provisional Back     alignment and domain information
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase Back     alignment and domain information
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>PRK13500 transcriptional activator RhaR; Provisional Back     alignment and domain information
>PRK13503 transcriptional activator RhaS; Provisional Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria Back     alignment and domain information
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase Back     alignment and domain information
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel) Back     alignment and domain information
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5 Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional Back     alignment and domain information
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional Back     alignment and domain information
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional Back     alignment and domain information
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PHA02984 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
1pmi_A440 Candida Albicans Phosphomannose Isomerase Length = 1e-72
3h1m_A393 Crystal Structure Of Mannose 6-Phosphate Isomerase 1e-36
2wfp_A394 Crystal Structure Of Mannose 6-Phosphate Isomerase 1e-36
>pdb|1PMI|A Chain A, Candida Albicans Phosphomannose Isomerase Length = 440 Back     alignment and structure 
Iteration: 1

 Score =  270 bits (690), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/442 (37%), Positives = 253/442 (57%), Gaps = 40/442 (9%)
Query: 18  KPLRLQCAVKNYNWGIVGSKSHVSRLFCLNSGTHINPNE--PYAEFWIGTHESGAS-FLD 74
           K  R+QC  +NY+WG +GS S V++ F  NS   I  +E  PYAE W+GTH S  S  +D
Sbjct: 4   KLFRIQCGYQNYDWGKIGSSSAVAQ-FVHNSDPSITIDETKPYAELWMGTHPSVPSKAID 62
Query: 75  HGGLSLKEWISKNP-DVLGDRVLNKWGG--DLPFLFKVLSVEKALSIQAHPDKELARTLH 131
               +L++ ++  P + LG+ ++ K+G   +LPFLFKVLS+EK LSIQAHPDK+L   LH
Sbjct: 63  LNNQTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLH 122
Query: 132 KSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQC--- 188
            + P  Y D+NHKPEMA+A+T+FE  CGF  L +L   L TVPE+ +++G    ++    
Sbjct: 123 AADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISG 182
Query: 189 --FPVNEFGRSQEV--KAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEM 244
              P  E G   +V  + +++ +F +++ +  D I +  ++L  R + E +  +  D  +
Sbjct: 183 IKLPA-EVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRL 241
Query: 245 --LVLRLEGQYPDDAGVL-AAFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNV 301
             L+ RL  Q+P+D G+     LLN+V LN+GEA+ + A +PHAYI G+ IECMA SDNV
Sbjct: 242 PELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNV 301
Query: 302 VRAGLTSKHRDIQTLFSMLNRR-----------QGFPQILKGISLNPYTTRYLPPFEEFE 350
           VRAG T K +D++ L  ML              Q FP+  KG ++   +  Y PP  EF 
Sbjct: 302 VRAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPR-SKGDAVK--SVLYDPPIAEFS 358
Query: 351 VDCCVIPQA--ASLVFPSVAGPSLFLFISGNGT--LSAGFSKEQIVEEGEVLFVP--AYM 404
           V   +  ++     V   + GPS+ +  +G GT  ++   S +Q ++ G V FV   + +
Sbjct: 359 VLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSI 418
Query: 405 EFTI--ASQSKELHLYRAGVNS 424
           E T   A+Q ++   YRA V +
Sbjct: 419 ELTADSANQDQDFTTYRAFVEA 440
>pdb|3H1M|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Holo; Zinc Bound) Length = 393 Back     alignment and structure
>pdb|2WFP|A Chain A, Crystal Structure Of Mannose 6-Phosphate Isomerase (Apo Form) From Salmonella Typhimurium Length = 394 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
1pmi_A440 PMI, phosphomannose isomerase; aldose-ketose isome 1e-115
2wfp_A394 Mannose-6-phosphate isomerase; APO-structure, meta 3e-97
1zx5_A300 Mannosephosphate isomerase, putative; STRU genomic 2e-16
1zx5_A300 Mannosephosphate isomerase, putative; STRU genomic 2e-09
1qwr_A319 Mannose-6-phosphate isomerase; structural genomics 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3 Length = 440 Back     alignment and structure
 Score =  344 bits (884), Expect = e-115
 Identities = 151/435 (34%), Positives = 233/435 (53%), Gaps = 30/435 (6%)

Query: 20  LRLQCAVKNYNWGIVGSKSHVSRLF-CLNSGTHINPNEPYAEFWIGTHESGASFL-DHGG 77
            R+QC  +NY+WG +GS S V++     +    I+  +PYAE W+GTH S  S   D   
Sbjct: 6   FRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLNN 65

Query: 78  LSLKEWISKNP-DVLGDRVLNKWG--GDLPFLFKVLSVEKALSIQAHPDKELARTLHKSQ 134
            +L++ ++  P + LG+ ++ K+G   +LPFLFKVLS+EK LSIQAHPDK+L   LH + 
Sbjct: 66  QTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAAD 125

Query: 135 PSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQ------C 188
           P  Y D+NHKPEMA+A+T+FE  CGF  L +L   L TVPE+ +++G    ++       
Sbjct: 126 PKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISGIKL 185

Query: 189 FPVNEFGRSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEM--LV 246
                       + +++ +F +++ +  D I +  ++L  R + E +  +  D  +  L+
Sbjct: 186 PAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRLPELI 245

Query: 247 LRLEGQYPDDAGVLAAFL-LNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAG 305
            RL  Q+P+D G+    L LN+V LN+GEA+ + A +PHAYI G+ IECMA SDNVVRAG
Sbjct: 246 QRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNVVRAG 305

Query: 306 LTSKHRDIQTLFSMLNRRQGFPQILK--------GISLNPYTTRYLPPFEEFEVDCCVIP 357
            T K +D++ L  ML       +  K               +  Y PP  EF V   +  
Sbjct: 306 FTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTIFD 365

Query: 358 QAA--SLVFPSVAGPSLFLFISGNGTLSA--GFSKEQIVEEGEVLFVPAYMEFTIASQS- 412
           ++     V   + GPS+ +  +G GT+      S +Q ++ G V FV       + + S 
Sbjct: 366 KSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTADSA 425

Query: 413 ---KELHLYRAGVNS 424
              ++   YRA V +
Sbjct: 426 NQDQDFTTYRAFVEA 440
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A* Length = 394 Back     alignment and structure
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3 Length = 300 Back     alignment and structure
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3 Length = 300 Back     alignment and structure
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3 Length = 319 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
1pmi_A440 PMI, phosphomannose isomerase; aldose-ketose isome 100.0
2wfp_A394 Mannose-6-phosphate isomerase; APO-structure, meta 100.0
1zx5_A300 Mannosephosphate isomerase, putative; STRU genomic 100.0
1qwr_A319 Mannose-6-phosphate isomerase; structural genomics 100.0
3rns_A227 Cupin 2 conserved barrel domain protein; structura 98.78
3h7j_A243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 98.33
1sef_A274 Conserved hypothetical protein; structural genomic 98.22
1sfn_A246 Conserved hypothetical protein; structural genomic 98.15
1sq4_A278 GLXB, glyoxylate-induced protein; structural genom 98.1
1rc6_A261 Hypothetical protein YLBA; structural genomics, NY 97.95
4e2q_A266 Ureidoglycine aminohydrolase; BI-cupin, manganese 97.88
1j58_A385 YVRK protein; cupin, decarboxyklase, oxalate, mang 97.85
2vqa_A361 SLL1358 protein, MNCA; periplasmic binding protein 97.83
2qnk_A286 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol 97.82
2d40_A354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 97.8
3bu7_A394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 97.77
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 97.74
1juh_A350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 97.74
3nw4_A368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 97.73
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 97.72
3lwc_A119 Uncharacterized protein; structural genomics, unkn 97.64
3myx_A238 Uncharacterized protein pspto_0244; protein of unk 97.61
1y3t_A337 Hypothetical protein YXAG; BI cupin, dioxygenase, 97.6
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 97.6
1v70_A105 Probable antibiotics synthesis protein; structural 97.59
2q30_A110 Uncharacterized protein; double-stranded beta-heli 97.56
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 97.49
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 97.44
1uij_A416 Beta subunit of beta conglycinin; double-stranded 97.43
2opk_A112 Hypothetical protein; putative mannose-6-phosphate 97.36
3h8u_A125 Uncharacterized conserved protein with double-STR 97.35
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 97.27
2phl_A397 Phaseolin; plant SEED storage protein(vicilin); HE 97.26
2vpv_A166 Protein MIF2, MIF2P; nucleus, mitosis, centromere, 97.22
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 97.19
4i4a_A128 Similar to unknown protein; structural genomics, P 97.19
1vj2_A126 Novel manganese-containing cupin TM1459; structura 97.17
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 97.13
2ea7_A434 7S globulin-1; beta barrel, cupin superfamily, pla 97.06
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 96.99
2pyt_A133 Ethanolamine utilization protein EUTQ; structural 96.98
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 96.97
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 96.96
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 96.96
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 96.95
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 96.95
3rns_A 227 Cupin 2 conserved barrel domain protein; structura 96.87
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 96.84
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 96.81
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 96.77
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 96.71
3kgl_A466 Cruciferin; 11S SEED globulin, rapeseed, SEED stor 96.7
3i7d_A163 Sugar phosphate isomerase; YP_168127.1, structural 96.67
4axo_A151 EUTQ, ethanolamine utilization protein; structural 96.64
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 96.6
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 96.59
3qac_A465 11S globulin SEED storage protein; 11S SEED storag 96.45
1y3t_A 337 Hypothetical protein YXAG; BI cupin, dioxygenase, 96.44
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 96.4
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 96.38
3s7i_A418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 96.36
4b29_A217 Dimethylsulfoniopropionate lyase; hydrolase, dimet 96.32
4e2q_A 266 Ureidoglycine aminohydrolase; BI-cupin, manganese 96.25
2cav_A445 Protein (canavalin); vicilin, 7S SEED protein, dom 96.22
3bcw_A123 Uncharacterized protein; structural genomics, join 96.17
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 96.16
3es1_A172 Cupin 2, conserved barrel domain protein; YP_00116 96.12
1sq4_A 278 GLXB, glyoxylate-induced protein; structural genom 96.09
1sfn_A 246 Conserved hypothetical protein; structural genomic 95.9
2vqa_A 361 SLL1358 protein, MNCA; periplasmic binding protein 95.86
1uij_A 416 Beta subunit of beta conglycinin; double-stranded 95.7
1rc6_A 261 Hypothetical protein YLBA; structural genomics, NY 95.69
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 95.68
2qjv_A 270 Uncharacterized IOLB-like protein; structural geno 95.65
2y0o_A175 Probable D-lyxose ketol-isomerase; carbohydrate me 95.57
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 95.56
3es4_A116 Uncharacterized protein DUF861 with A RMLC-like C; 95.48
3myx_A 238 Uncharacterized protein pspto_0244; protein of unk 95.43
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 95.43
1fi2_A201 Oxalate oxidase, germin; beta-jellyroll, oxidoredu 95.38
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 95.28
3d82_A102 Cupin 2, conserved barrel domain protein; structur 95.28
1sef_A 274 Conserved hypothetical protein; structural genomic 95.26
2d5f_A 493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 95.22
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 95.17
2ea7_A 434 7S globulin-1; beta barrel, cupin superfamily, pla 95.08
2cav_A 445 Protein (canavalin); vicilin, 7S SEED protein, dom 95.06
2d40_A 354 Z3393, putative gentisate 1,2-dioxygenase; gentisi 94.89
1j58_A 385 YVRK protein; cupin, decarboxyklase, oxalate, mang 94.74
2e9q_A 459 11S globulin subunit beta; cucubitin, pumpkin SEED 94.69
3nw4_A 368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 94.59
3h7j_A 243 Bacilysin biosynthesis protein BACB; YWFC, bacilys 94.41
2arc_A164 ARAC, arabinose operon regulatory protein; transcr 94.39
3c3v_A 510 Arachin ARAH3 isoform; peanut allergen, allergy, g 94.34
3bu7_A 394 Gentisate 1,2-dioxygenase; cupin domain, oxidoredu 94.24
1fxz_A 476 Glycinin G1; proglycinin, legumin, SEED storage pr 94.19
3ksc_A 496 LEGA class, prolegumin; PEA prolegumin, 11S SEED s 94.14
3o14_A223 Anti-ecfsigma factor, CHRR; cupin, structural geno 94.1
3s7i_A 418 Allergen ARA H 1, clone P41B; bicupin, vicilin, st 93.99
3kgl_A 466 Cruciferin; 11S SEED globulin, rapeseed, SEED stor 93.86
2phl_A 397 Phaseolin; plant SEED storage protein(vicilin); HE 93.75
2d5f_A493 Glycinin A3B4 subunit; soybean, globulin, 11S,SEED 93.47
3qac_A 465 11S globulin SEED storage protein; 11S SEED storag 93.06
1vr3_A191 Acireductone dioxygenase; 13543033, structural gen 92.93
1juh_A 350 Quercetin 2,3-dioxygenase; cupin, glycoprotein, be 92.77
1fxz_A476 Glycinin G1; proglycinin, legumin, SEED storage pr 92.77
3c3v_A510 Arachin ARAH3 isoform; peanut allergen, allergy, g 92.45
2o1q_A145 Putative acetyl/propionyl-COA carboxylase, alpha; 92.39
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 92.37
2e9q_A459 11S globulin subunit beta; cucubitin, pumpkin SEED 92.33
4h7l_A157 Uncharacterized protein; structural genomics, PSI- 92.19
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 91.46
2opk_A112 Hypothetical protein; putative mannose-6-phosphate 91.16
2vec_A256 YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe 91.11
1o5u_A101 Novel thermotoga maritima enzyme TM1112; cupin, st 90.73
3ksc_A496 LEGA class, prolegumin; PEA prolegumin, 11S SEED s 90.71
2i45_A107 Hypothetical protein; neisseria meningitidis cupin 90.54
3lwc_A119 Uncharacterized protein; structural genomics, unkn 90.3
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 90.05
3fz3_A531 Prunin; TREE NUT allergen, allergy, amandin, almon 89.94
3hqx_A111 UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC 89.88
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 89.74
2oyz_A94 UPF0345 protein VPA0057; unknown function, structu 89.71
1v70_A105 Probable antibiotics synthesis protein; structural 89.62
3eo6_A106 Protein of unknown function (DUF1255); AFE_2634, s 89.08
3d82_A102 Cupin 2, conserved barrel domain protein; structur 89.06
2o8q_A134 Hypothetical protein; cpuin-like fold, structural 88.93
2q30_A110 Uncharacterized protein; double-stranded beta-heli 88.71
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 88.53
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 88.34
2b8m_A117 Hypothetical protein MJ0764; structural genomics, 88.22
3h8u_A125 Uncharacterized conserved protein with double-STR 88.08
1zrr_A179 E-2/E-2' protein; nickel, cupin, beta helix, methi 87.6
1vr3_A191 Acireductone dioxygenase; 13543033, structural gen 87.51
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 87.37
3lag_A98 Uncharacterized protein RPA4178; functionally unkn 87.35
1dgw_A178 Canavalin; duplicated swiss-roll beta barrels, loo 87.28
3ht1_A145 REMF protein; cupin fold, Zn-binding, antibiotic b 87.24
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 87.13
4axo_A151 EUTQ, ethanolamine utilization protein; structural 87.07
1yfu_A174 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid 86.67
3gbg_A 276 TCP pilus virulence regulatory protein; cupin, hel 86.26
1zvf_A176 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b 86.18
3cew_A125 Uncharacterized cupin protein; all beta-protein, j 86.14
2pyt_A133 Ethanolamine utilization protein EUTQ; structural 86.06
2oa2_A148 BH2720 protein; 10175341, structural genomics, joi 85.71
3bcw_A123 Uncharacterized protein; structural genomics, join 85.7
4i4a_A128 Similar to unknown protein; structural genomics, P 85.65
2arc_A164 ARAC, arabinose operon regulatory protein; transcr 85.32
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 84.99
1ywk_A 289 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer 84.96
3ebr_A159 Uncharacterized RMLC-like cupin; structural genomi 84.94
1lr5_A163 Auxin binding protein 1; beta jellyroll, double st 84.88
1vj2_A126 Novel manganese-containing cupin TM1459; structura 84.69
2bnm_A198 Epoxidase; oxidoreductase, cupin, HTH, cation-depe 84.61
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 84.58
1zrr_A179 E-2/E-2' protein; nickel, cupin, beta helix, methi 84.45
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 84.25
1xru_A 282 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; 83.76
1y9q_A192 Transcriptional regulator, HTH_3 family; transcrip 83.67
1o4t_A133 Putative oxalate decarboxylase; double-stranded be 83.38
4b29_A217 Dimethylsulfoniopropionate lyase; hydrolase, dimet 83.22
2o1q_A145 Putative acetyl/propionyl-COA carboxylase, alpha; 82.52
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 82.27
2ozi_A98 Hypothetical protein RPA4178; APC6210, putative pr 82.11
2q1z_B195 Anti-sigma factor CHRR, transcriptional activator; 82.04
3l2h_A162 Putative sugar phosphate isomerase; AFE_0303, stru 81.91
2xlg_A239 SLL1785 protein, CUCA; metal binding protein, cupi 81.69
2f4p_A147 Hypothetical protein TM1010; double-stranded beta- 81.07
1x82_A190 Glucose-6-phosphate isomerase; cupin superfamily, 80.93
3d0j_A140 Uncharacterized protein CA_C3497; beta-barrel, str 80.26
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3 Back     alignment and structure
Probab=100.00  E-value=1.4e-97  Score=767.81  Aligned_cols=407  Identities=36%  Similarity=0.643  Sum_probs=349.7

Q ss_pred             CCEEeecccccccCCCCCCcchHhhhhh-cCCCCCCCCCCCceEEEEeecCCCceeecC-CCcchHHHHhhCCC-ccCch
Q 014147           18 KPLRLQCAVKNYNWGIVGSKSHVSRLFC-LNSGTHINPNEPYAEFWIGTHESGASFLDH-GGLSLKEWISKNPD-VLGDR   94 (430)
Q Consensus        18 ~~~rL~p~~~~y~WGg~~~~s~l~~l~~-~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~-g~~~L~~~i~~~p~-~LG~~   94 (430)
                      .|++|+|.+++|+|||+|+++++++|.+ .++++++++++||||+|||+||++||+|.+ .+.+|.++|+++|. +||..
T Consensus         4 ~~~~l~p~~~~~~WGg~Gs~~l~~~l~~~~~~~~~~~~~~~~aE~W~g~hp~~~S~v~~~~G~~L~~~i~~~~~~llG~~   83 (440)
T 1pmi_A            4 KLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLNNQTLRDLVTAKPQEYLGES   83 (440)
T ss_dssp             SEEEEEECEECCTTBEEGGGSHHHHHHHHHCTTSCCCTTSEECEEEESCCTTSCEEETTTTTEEHHHHHHHCHHHHTCHH
T ss_pred             ccEEeecccCcCCCCCCchHHHHHHHhcCCCccccCCCCCCEEEEEEEecCCCCeEEeCCCCCCHHHHHHhChHhhcCch
Confidence            5899999999999999887789889873 345567766789999999999999999865 46799999999976 99999


Q ss_pred             hhhhcCC--CCCceeeeeccCCCCceeccCChHHHHhhcccCCCCCCCCCCCceeEEeccchhhhcCCCchHHHHHhhcC
Q 014147           95 VLNKWGG--DLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCT  172 (430)
Q Consensus        95 ~~~~fg~--~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ei~~~l~~  172 (430)
                      +.++||.  +||||+||||++++|||||||||++|+++|+++|+||||+||||||||||++|+++||||+.+||++.|+.
T Consensus        84 ~~~~fg~~~~~P~L~K~Lda~~~LSiQvHPd~~~A~~~~~~~p~~YkD~ngKpE~~y~L~~~~~~~Gf~~~~ei~~~l~~  163 (440)
T 1pmi_A           84 IITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLAT  163 (440)
T ss_dssp             HHHHHCCSSSCSEEEEEEEESSCCCEEECCCHHHHHHHHHHCTTTCCSSCCCCEEEEESSCEEEEEEECCHHHHHHHHHH
T ss_pred             hhhhcCCcccCcEEEhhhccCCCCceeeCcCHHHHHHhhcccccccCCCCCCcEEEEEccchhhhhcCCcHHHHHHHHhh
Confidence            9999998  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHhhcCccccccCc---ccccCCc---hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcc--cccchHHH
Q 014147          173 VPEIVDLVGGADAEQCFP---VNEFGRS---QEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKK--RQLTDKEM  244 (430)
Q Consensus       173 ~p~l~~l~~~~~~~~~~~---~~~~~~~---~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~  244 (430)
                      +|+|+.++|.+...+|..   ....+.+   ..+++.|+++|+.+|+++++++++++++|+++++.....  ......++
T Consensus       164 ~pel~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~~f~~lm~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~  243 (440)
T 1pmi_A          164 VPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRLPE  243 (440)
T ss_dssp             CHHHHHHHCHHHHHHHHHHCCCSCCTTSHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHTTCTTHHH
T ss_pred             chhhhhhhchhhhhhhhhhcccccccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccchHHH
Confidence            999999998654444421   1111111   246889999999999999999999999999888652110  00023578


Q ss_pred             HHHHHHhcCCCCceehh-hhhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhccccC
Q 014147          245 LVLRLEGQYPDDAGVLA-AFLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNRR  323 (430)
Q Consensus       245 ~~~~l~~~yP~D~G~~~-~~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~~  323 (430)
                      +++||+++||+|+|+|+ ++|||+|+|+|||+||||||+||||++|+|+|||||||||||+|+|||++|++++++|++|+
T Consensus       244 ~i~~L~~~yP~D~G~~~~~~lLN~v~L~pGea~flpAg~~HAYl~G~~vE~Ma~SDNV~RaGlTpK~~Dv~~Ll~~l~~~  323 (440)
T 1pmi_A          244 LIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTYS  323 (440)
T ss_dssp             HHHHHHHHSTTCTHHHHTTTTEEEEEECTTCEEEECTTCCEEEEEEEEEEEEESCCCCEEEESCSSCCCHHHHHHHCCCC
T ss_pred             HHHHHHHHCCCCccceehhhhcceEecCCCCEEecCCCCccccCCCcEEEEeccCCcEEecCCCccccCHHHHHHhcccc
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccc--cccccC-----C-ceEEeCCCCCceEEEEEEec--CCCeEEecCCCCeEEEEEEcCcEEEEeCCc-ce-EE
Q 014147          324 QGFPQIL--KGISLN-----P-YTTRYLPPFEEFEVDCCVIP--QAASLVFPSVAGPSLFLFISGNGTLSAGFS-KE-QI  391 (430)
Q Consensus       324 ~~~~~~~--~~~~~~-----~-~~~~y~~~~~~F~v~~~~~~--~g~~~~~~~~~~~~il~v~~G~~~i~~~~~-~~-~~  391 (430)
                      +.+++..  .+.+..     + .+..|.+|+++|+|.++++.  ++....+....+++|++|++|+++|..+++ .. ..
T Consensus       324 ~~~~~~~~~~p~~~~~~~~~~~~~~~y~~P~~eF~v~~~~~~~~~~~~~~~~~~~~~~illv~~G~g~i~~~~~~~~~~~  403 (440)
T 1pmi_A          324 YESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQK  403 (440)
T ss_dssp             CCCGGGGBCCCBCCTTEEESCSEEEEECCSSSSCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGGGCEE
T ss_pred             CCCcccccccceeccccccCCcceEEECCCCCeEEEEEEEecCCCCceeEEecCCCcEEEEEEeCeEEEEeCCcccceEE
Confidence            8776542  222221     2 47789999999999999997  343455556689999999999999987543 23 79


Q ss_pred             eccccEEEEeCCCeEEEEec----CccEEEEEEecCC
Q 014147          392 VEEGEVLFVPAYMEFTIASQ----SKELHLYRAGVNS  424 (430)
Q Consensus       392 l~~Ge~~fIpa~~~~~i~~~----~~~~~~~~a~~~~  424 (430)
                      |++|+++||||+..+++++.    ++.+++|+|+|+.
T Consensus       404 l~~G~~~fvpa~~~~~i~g~~~~~~~~~~~~~a~~~~  440 (440)
T 1pmi_A          404 IDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA  440 (440)
T ss_dssp             EETTCEEEECTTCCEEEEECSSCCSSCCEEEEEECCC
T ss_pred             eccCCEEEEeCCCcEEEEEecccCCCcEEEEEEEecC
Confidence            99999999999966999985    4579999999873
>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A* Back     alignment and structure
>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3 Back     alignment and structure
>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3 Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Back     alignment and structure
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11 Back     alignment and structure
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Back     alignment and structure
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Back     alignment and structure
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Back     alignment and structure
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Back     alignment and structure
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3} Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Back     alignment and structure
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Back     alignment and structure
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID} Back     alignment and structure
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Back     alignment and structure
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11 Back     alignment and structure
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Back     alignment and structure
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Back     alignment and structure
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2} Back     alignment and structure
>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp} Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str} Back     alignment and structure
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Back     alignment and structure
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Back     alignment and structure
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Back     alignment and structure
>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Back     alignment and structure
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Back     alignment and structure
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Back     alignment and structure
>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei} Back     alignment and structure
>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A Back     alignment and structure
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Back     alignment and structure
>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Back     alignment and structure
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus} Back     alignment and structure
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6 Back     alignment and structure
>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Back     alignment and structure
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Back     alignment and structure
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Back     alignment and structure
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21 Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Back     alignment and structure
>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus} Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Back     alignment and structure
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli} Back     alignment and structure
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A Back     alignment and structure
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Back     alignment and structure
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis} Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Back     alignment and structure
>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0 Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22 Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270} Back     alignment and structure
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Back     alignment and structure
>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans} Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A Back     alignment and structure
>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6 Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris} Back     alignment and structure
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Back     alignment and structure
>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile} Back     alignment and structure
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A* Back     alignment and structure
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae} Back     alignment and structure
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20 Back     alignment and structure
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Back     alignment and structure
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Back     alignment and structure
>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans} Back     alignment and structure
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50} Back     alignment and structure
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp} Back     alignment and structure
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13 Back     alignment and structure
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134} Back     alignment and structure
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Back     alignment and structure
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Back     alignment and structure
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomer; beta barrel, cupin, isomerase; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A Back     alignment and structure
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Back     alignment and structure
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism} Back     alignment and structure
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21 Back     alignment and structure
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Back     alignment and structure
>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Back     alignment and structure
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9 Back     alignment and structure
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A* Back     alignment and structure
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 430
d1pmia_440 b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Can 1e-116
d1zx5a1299 b.82.1.3 (A:1-299) Putative mannosephosphate isome 1e-23
d1zx5a1299 b.82.1.3 (A:1-299) Putative mannosephosphate isome 5e-22
d1qwra_315 b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA { 5e-22
d1qwra_315 b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA { 1e-21
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]} Length = 440 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

 Score =  344 bits (884), Expect = e-116
 Identities = 153/436 (35%), Positives = 233/436 (53%), Gaps = 30/436 (6%)

Query: 17  NKPLRLQCAVKNYNWGIVGSKSHVSRLF-CLNSGTHINPNEPYAEFWIGTHESGASFL-D 74
            K  R+QC  +NY+WG +GS S V++     +    I+  +PYAE W+GTH S  S   D
Sbjct: 3   EKLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAID 62

Query: 75  HGGLSLKEWISKNPD-VLGDRVLNKWG--GDLPFLFKVLSVEKALSIQAHPDKELARTLH 131
               +L++ ++  P   LG+ ++ K+G   +LPFLFKVLS+EK LSIQAHPDK+L   LH
Sbjct: 63  LNNQTLRDLVTAKPQEYLGESIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLH 122

Query: 132 KSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLCTVPEIVDLVGGADAEQCFPV 191
            + P  Y D+NHKPEMA+A+T+FE  CGF  L +L   L TVPE+ +++G    ++    
Sbjct: 123 AADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLATVPELNEIIGQELVDEFISG 182

Query: 192 NEFGRS------QEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKKRQLTDKEM- 244
            +             + +++ +F +++ +  D I +  ++L  R + E +  +  D  + 
Sbjct: 183 IKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRLP 242

Query: 245 -LVLRLEGQYPDDAGVLAAFL-LNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVV 302
            L+ RL  Q+P+D G+    L LN+V LN+GEA+ + A +PHAYI G+ IECMA SDNVV
Sbjct: 243 ELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNVV 302

Query: 303 RAGLTSKHRDIQTLFSMLNRRQGFPQILK--------GISLNPYTTRYLPPFEEFEVDCC 354
           RAG T K +D++ L  ML       +  K               +  Y PP  EF V   
Sbjct: 303 RAGFTPKFKDVKNLVEMLTYSYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQT 362

Query: 355 VIP--QAASLVFPSVAGPSLFLFISGNGTLSA--GFSKEQIVEEGEVLFVPAYMEFTI-- 408
           +    +    V   + GPS+ +  +G GT+      S +Q ++ G V FV       +  
Sbjct: 363 IFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQKIDTGYVFFVAPGSSIELTA 422

Query: 409 --ASQSKELHLYRAGV 422
             A+Q ++   YRA V
Sbjct: 423 DSANQDQDFTTYRAFV 438
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 299 Back     information, alignment and structure
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 299 Back     information, alignment and structure
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]} Length = 315 Back     information, alignment and structure
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]} Length = 315 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
d1pmia_440 Phosphomannose isomerase {Yeast (Candida albicans) 100.0
d1qwra_315 Mannose-6-phosphate isomerase ManA {Bacillus subti 100.0
d1zx5a1299 Putative mannosephosphate isomerase AF0035 {Archae 100.0
d1rc6a_253 Hypothetical protein YlbA {Escherichia coli [TaxId 98.15
d1sfna_245 Hypothetical protein DR1152 {Deinococcus radiodura 98.12
d1sefa_250 Hypothetical protein EF2996 {Enterococcus faecalis 98.09
d2d40a1308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 97.88
d1sq4a_273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 97.86
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 97.86
d1y3ta1330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 97.86
d1juha_348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 97.84
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 97.76
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 97.75
d1j58a_372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 97.72
d3bu7a1355 Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [ 97.7
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 97.59
d2phda1351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 97.58
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 97.47
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 97.3
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 97.04
d2pyta1128 Ethanolamine utilization protein EutQ {Salmonella 96.74
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 96.72
d1dgwa_178 Seed storage 7S protein {Jack bean (Canavalia ensi 96.65
d1uija1170 Seed storage 7S protein {Soybean (Glycine max), be 96.54
d2phla1200 Seed storage 7S protein {French bean (Phaseolus vu 96.36
d1uika1203 Seed storage 7S protein {Soybean (Glycine max), be 96.24
d1sfna_ 245 Hypothetical protein DR1152 {Deinococcus radiodura 96.1
d1y3ta1 330 Hypothetical protein YxaG {Bacillus subtilis [TaxI 95.83
d2phla2162 Seed storage 7S protein {French bean (Phaseolus vu 95.81
g1dgw.1168 Seed storage 7S protein {Jack bean (Canavalia ensi 95.68
d1sefa_ 250 Hypothetical protein EF2996 {Enterococcus faecalis 95.64
d1sq4a_ 273 Glyoxylate-induced protein PA1140 {Pseudomonas aer 95.61
d1uika2185 Seed storage 7S protein {Soybean (Glycine max), be 95.4
d1od5a2173 Seed storage 7S protein {Soybean (Glycine max), gl 95.32
d1o5ua_88 Hypothetical protein TM1112 {Thermotoga maritima [ 95.3
d1fxza2174 Seed storage 7S protein {Soybean (Glycine max), pr 95.2
d1x82a_190 Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc 94.79
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 94.75
d2et1a1201 Germin {Barley (Hordeum vulgare) [TaxId: 4513]} 94.74
d1rc6a_ 253 Hypothetical protein YlbA {Escherichia coli [TaxId 94.71
d2arca_161 Regulatory protein AraC {Escherichia coli [TaxId: 94.26
d1fxza1239 Seed storage 7S protein {Soybean (Glycine max), pr 93.82
d1od5a1245 Seed storage 7S protein {Soybean (Glycine max), gl 93.53
d1juha_ 348 Quercetin 2,3-dioxygenase {Aspergillus japonicus [ 93.48
d2d40a1 308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 93.35
d1j58a_ 372 Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil 92.98
d2bnma2122 Hydroxypropylphosphonic acid epoxidase Fom4, C-ter 92.1
d1tq5a1231 Hypothetical protein YhhW {Escherichia coli [TaxId 91.55
d1vr3a1179 Acireductone dioxygenase {Mouse (Mus musculus) [Ta 90.94
d1ywka1 260 5-keto-4-deoxyuronate isomerase KduI {Enterococcus 90.54
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 90.46
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 89.78
d2phda1 351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 89.67
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 89.65
d1uija1170 Seed storage 7S protein {Soybean (Glycine max), be 89.1
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 88.46
d1j1la_288 Pirin {Human (Homo sapiens) [TaxId: 9606]} 87.87
d2pyta1128 Ethanolamine utilization protein EutQ {Salmonella 87.77
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 87.75
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 87.54
d2f4pa1134 Hypothetical protein TM1010 {Thermotoga maritima [ 87.54
d1lr5a_160 Auxin binding protein {Maize (Zea mays) [TaxId: 45 87.51
d1xrua1 277 5-keto-4-deoxyuronate isomerase KduI {Escherichia 87.47
d1uika1203 Seed storage 7S protein {Soybean (Glycine max), be 86.43
d1dgwa_178 Seed storage 7S protein {Jack bean (Canavalia ensi 85.52
d1zrra1179 Acireductone dioxygenase {Klebsiella pneumoniae [T 84.65
d2arca_161 Regulatory protein AraC {Escherichia coli [TaxId: 84.46
d2oyza193 Uncharacterized protein VPA0057 {Vibrio parahaemol 84.44
d2phla1200 Seed storage 7S protein {French bean (Phaseolus vu 82.28
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 81.84
d1od5a2173 Seed storage 7S protein {Soybean (Glycine max), gl 80.74
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=100.00  E-value=2.6e-98  Score=774.81  Aligned_cols=408  Identities=36%  Similarity=0.636  Sum_probs=354.1

Q ss_pred             CCCEEeecccccccCCCCCCcchHhhhh-hcCCCCCCCCCCCceEEEEeecCCCceeecCC-CcchHHHHhhCCC-ccCc
Q 014147           17 NKPLRLQCAVKNYNWGIVGSKSHVSRLF-CLNSGTHINPNEPYAEFWIGTHESGASFLDHG-GLSLKEWISKNPD-VLGD   93 (430)
Q Consensus        17 ~~~~rL~p~~~~y~WGg~~~~s~l~~l~-~~~~~~~~~~~~~~aE~W~g~Hp~~pS~v~~g-~~~L~~~i~~~p~-~LG~   93 (430)
                      .+|++|+|.+|+|+||++|+.|+|++|. ...+++++++++||||+|||+||++||++.+| +.+|.++|++||+ +||.
T Consensus         3 ~~~~~l~~~~q~Y~WG~~g~~s~i~~l~~~~~~~~~~~~~~P~AElW~g~Hp~~pS~v~~g~g~~L~~~i~~~p~~~LG~   82 (440)
T d1pmia_           3 EKLFRIQCGYQNYDWGKIGSSSAVAQFVHNSDPSITIDETKPYAELWMGTHPSVPSKAIDLNNQTLRDLVTAKPQEYLGE   82 (440)
T ss_dssp             SSEEEEEECEECCTTBEEGGGSHHHHHHHHHCTTSCCCTTSEECEEEESCCTTSCEEETTTTTEEHHHHHHHCHHHHTCH
T ss_pred             CceEeccCCcccCCCCCCCchhHHHHHhccCCCccccCCCCEEEEEEeeeCCCCceeeecCCCCcHHHHHHhChHhhcCh
Confidence            3699999999999999999899999998 45667888889999999999999999997654 6799999999998 9999


Q ss_pred             hhhhhcCC--CCCceeeeeccCCCCceeccCChHHHHhhcccCCCCCCCCCCCceeEEeccchhhhcCCCchHHHHHhhc
Q 014147           94 RVLNKWGG--DLPFLFKVLSVEKALSIQAHPDKELARTLHKSQPSLYSDENHKPEMALALTEFEALCGFISLKELRNVLC  171 (430)
Q Consensus        94 ~~~~~fg~--~lP~L~KvLda~~~LSIQvHPd~~~A~~~~~~~p~~Y~D~n~KpE~~~aL~~~~~~~GFr~~~ei~~~l~  171 (430)
                      ++.++||.  +|||||||||+++|||||||||+++|+++|+++|++|+|+||||||||||++|+++|||||.+||.++|+
T Consensus        83 ~~~~~fg~~~~lP~L~KvLda~~~LSIQVHPd~~~A~~~~~~~~~~y~D~n~KpE~~~aLt~F~al~Gfrp~~ei~~~L~  162 (440)
T d1pmia_          83 SIITKFGSSKELPFLFKVLSIEKVLSIQAHPDKKLGAQLHAADPKNYPDDNHKPEMAIAVTDFEGFCGFKPLDQLAKTLA  162 (440)
T ss_dssp             HHHHHHCCSSSCSEEEEEEEESSCCCEEECCCHHHHHHHHHHCTTTCCSSCCCCEEEEESSCEEEEEEECCHHHHHHHHH
T ss_pred             hhHhhcCCCcCCceeeeeeccCCCCceeeCCCHHHHHhhccccccccCCCCCCceEEEEecchhhhcCCCCHHHHHHHHH
Confidence            99999984  8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHhhcCccccccCcccccC------CchhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhhcc--cccchHH
Q 014147          172 TVPEIVDLVGGADAEQCFPVNEFG------RSQEVKAIVESIFSQILLSSKDEICEIISRLKWRLNLEKKK--RQLTDKE  243 (430)
Q Consensus       172 ~~p~l~~l~~~~~~~~~~~~~~~~------~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~  243 (430)
                      .+|+++.++|.....++.......      .....++.||++|+.+|+++.+.++++++.|.+++......  .......
T Consensus       163 ~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  242 (440)
T d1pmia_         163 TVPELNEIIGQELVDEFISGIKLPAEVGSQDDVNNRKLLQKVFGKLMNTDDDVIKQQTAKLLERTDREPQVFKDIDSRLP  242 (440)
T ss_dssp             HCHHHHHHHCHHHHHHHHHHCCCSCCTTSHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCHHHHHTTCTTHH
T ss_pred             hChHHHHhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhchhcccccchhHH
Confidence            999999999976554442221111      12457889999999999999999999999999988753210  0122367


Q ss_pred             HHHHHHHhcCCCCceehhh-hhcceEEccCCCEEEecCCCceeeccCcEEEEeecCCcEEEcCCCCCccCHHHHHhcccc
Q 014147          244 MLVLRLEGQYPDDAGVLAA-FLLNYVKLNRGEALCIGANEPHAYIRGECIECMATSDNVVRAGLTSKHRDIQTLFSMLNR  322 (430)
Q Consensus       244 ~~~~~l~~~yP~D~G~~~~-~~Ln~v~l~pGd~i~ipaG~~HAy~~G~~~Eima~SDnv~R~gltpk~~die~ll~~l~~  322 (430)
                      ++++||+++||+|+|++++ ++||+++|+|||+||||||+||||++|++||||||||||||+|+|||++|+++++++++|
T Consensus       243 ~~~~~l~~~yp~D~g~~~~~l~LN~v~l~pGdaifvpaG~~HAyl~G~~vEima~SDnV~R~glt~K~~Dvd~ll~~l~~  322 (440)
T d1pmia_         243 ELIQRLNKQFPNDIGLFCGCLLLNHVGLNKGEAMFLQAKDPHAYISGDIIECMAASDNVVRAGFTPKFKDVKNLVEMLTY  322 (440)
T ss_dssp             HHHHHHHHHSTTCTHHHHTTTTEEEEEECTTCEEEECTTCCEEEEEEEEEEEEESCCCCEEEESCSSCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHCCCCcchhhHhhhheeecccccceEEcCCCCceEecCCcEEEEecccCcEEEecccccccCHHHHHHhhcc
Confidence            8999999999999999985 889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccccc--------CCceEEeCCCCCceEEEEEEecCCC--eEEecCCCCeEEEEEEcCcEEEEeCCcc--eE
Q 014147          323 RQGFPQILKGISL--------NPYTTRYLPPFEEFEVDCCVIPQAA--SLVFPSVAGPSLFLFISGNGTLSAGFSK--EQ  390 (430)
Q Consensus       323 ~~~~~~~~~~~~~--------~~~~~~y~~~~~~F~v~~~~~~~g~--~~~~~~~~~~~il~v~~G~~~i~~~~~~--~~  390 (430)
                      ++..++.....+.        ......|.+|+++|.+.++++.++.  .......++++|++|++|+++|...++.  .+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~F~v~~~~l~~~~~~~~~~~~~~~~~Illv~~G~~~i~~~~~~~~~~  402 (440)
T d1pmia_         323 SYESVEKQKMPLQEFPRSKGDAVKSVLYDPPIAEFSVLQTIFDKSKGGKQVIEGLNGPSIVIATNGKGTIQITGDDSTKQ  402 (440)
T ss_dssp             CCCCGGGGBCCCBCCTTEEESCSEEEEECCSSSSCEEEEEECCTTTCCEEEECCCSSCEEEEEEESEEEEEETTCGGGCE
T ss_pred             cccCccccccccccccccccCCcceEEeCCCCCceEEEEEEECCCCCceeeecCCCCcEEEEEEcCEEEEEecCCCccEE
Confidence            9887655432211        1447789999999999999997543  3444556789999999999999865431  68


Q ss_pred             EeccccEEEEeCCCeEEEEec----CccEEEEEEecCC
Q 014147          391 IVEEGEVLFVPAYMEFTIASQ----SKELHLYRAGVNS  424 (430)
Q Consensus       391 ~l~~Ge~~fIpa~~~~~i~~~----~~~~~~~~a~~~~  424 (430)
                      .|++|+++||||+..++|++.    ++++++|||||++
T Consensus       403 ~l~~G~~~fIpa~~~~~i~~~~~~~~~~~~~~rA~~~~  440 (440)
T d1pmia_         403 KIDTGYVFFVAPGSSIELTADSANQDQDFTTYRAFVEA  440 (440)
T ss_dssp             EEETTCEEEECTTCCEEEEECSSCCSSCCEEEEEECCC
T ss_pred             EeCCceEEEEcCCceEEEEeecCCCCCceEEEEEeccC
Confidence            999999999999988888874    2578999999974
>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Back     information, alignment and structure
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Back     information, alignment and structure
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure
>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Back     information, alignment and structure
>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]} Back     information, alignment and structure
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Back     information, alignment and structure
>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Back     information, alignment and structure
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]} Back     information, alignment and structure
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]} Back     information, alignment and structure
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]} Back     information, alignment and structure