Citrus Sinensis ID: 014172
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | 2.2.26 [Sep-21-2011] | |||||||
| E9L7A5 | 479 | Bifunctional aspartate am | N/A | no | 0.932 | 0.835 | 0.823 | 0.0 | |
| Q9SIE1 | 475 | Bifunctional aspartate am | yes | no | 0.986 | 0.890 | 0.736 | 0.0 | |
| Q5F4K8 | 492 | Aspartate aminotransferas | N/A | no | 0.881 | 0.768 | 0.774 | 1e-173 | |
| Q02635 | 400 | Aspartate aminotransferas | yes | no | 0.829 | 0.89 | 0.433 | 2e-81 | |
| Q1RGV0 | 399 | Aspartate aminotransferas | yes | no | 0.829 | 0.892 | 0.438 | 3e-79 | |
| Q9ZE56 | 399 | Aspartate aminotransferas | yes | no | 0.829 | 0.892 | 0.422 | 3e-79 | |
| Q4UND3 | 409 | Aspartate aminotransferas | yes | no | 0.829 | 0.870 | 0.422 | 1e-78 | |
| Q68XV9 | 399 | Aspartate aminotransferas | yes | no | 0.829 | 0.892 | 0.416 | 6e-78 | |
| Q55128 | 389 | Aspartate aminotransferas | N/A | no | 0.762 | 0.840 | 0.441 | 1e-76 | |
| Q92JE7 | 401 | Aspartate aminotransferas | yes | no | 0.829 | 0.887 | 0.416 | 2e-76 |
| >sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Petunia hybrida PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/408 (82%), Positives = 368/408 (90%), Gaps = 8/408 (1%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S LH F+L S RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQV L
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVAL 436
|
Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Can use 2-oxoglutarate, oxaloacetate and prephenate as substrates, but not phenylpyruvate or 4-hydroxyphenylpyruvate. Petunia hybrida (taxid: 4102) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 7EC: 9 |
| >sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Arabidopsis thaliana GN=PAT PE=1 SV=2 | Back alignment and function description |
|---|
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/429 (73%), Positives = 357/429 (83%), Gaps = 6/429 (1%)
Query: 6 HSSTSFISNPVNFGHSKIPAQIP-GSVSFPSRYLHNFNLNKSDRRVLRVMACSGVEEVQ- 63
SS + IS+ G S ++ P GSV F +F+ KS R+ A + + +
Sbjct: 4 QSSVAVISSAAARGESFPDSKKPIGSVRFQQPLRLSFSYCKSGNMSSRICAMAKPNDAET 63
Query: 64 ----VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGIN 119
VD+SLSPRV ++KPSKT+ ITD A L Q+GV VIRLAAGEPDFDTP ++AEAGIN
Sbjct: 64 LSSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVVAEAGIN 123
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 179
AIREGFTRYT NAG ELR AIC KLKEENGLSY PDQILVSNGAKQS+LQAVLAVCSPG
Sbjct: 124 AIREGFTRYTLNAGITELREAICRKLKEENGLSYAPDQILVSNGAKQSLLQAVLAVCSPG 183
Query: 180 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 239
DEVIIPAP+WVSY E AR+ADATPV++PT+IS NFLLDPK LESKLTEKSRLLILCSPSN
Sbjct: 184 DEVIIPAPYWVSYTEQARLADATPVVIPTKISNNFLLDPKDLESKLTEKSRLLILCSPSN 243
Query: 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299
PTGSVYPK+LL+EIARI+AKHPRLLVLSDEIYEHIIYAPATHTSFASLP M+ERTLTVNG
Sbjct: 244 PTGSVYPKSLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTVNG 303
Query: 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359
FSKAFAMTGWRLGY+AGPKH VAAC+K+Q Q +SGASSI+QKAGVAALGLG AGGE V++
Sbjct: 304 FSKAFAMTGWRLGYLAGPKHIVAACSKLQGQVSSGASSIAQKAGVAALGLGKAGGETVAE 363
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419
MVKA+RERRDFLVKS G+++GVK+SEPQGAFYLFIDFS YYGSEAEGFG I +S SL Y
Sbjct: 364 MVKAYRERRDFLVKSLGDIKGVKISEPQGAFYLFIDFSAYYGSEAEGFGLINDSSSLALY 423
Query: 420 LLDKAQVLL 428
LDK QV +
Sbjct: 424 FLDKFQVAM 432
|
Prokaryotic-type aspartate aminotransferase. Has also a prenate transaminase activity. Involved in the aromatic amino acids biosynthesis pathway via the arogenate route. Required for the transamination of prephenate into arogenate. Required for early development of the embryo. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 7 EC: 9 |
| >sp|Q5F4K8|PAT_PINPS Aspartate aminotransferase OS=Pinus pinaster GN=AAT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 606 bits (1563), Expect = e-173, Method: Compositional matrix adjust.
Identities = 295/381 (77%), Positives = 332/381 (87%), Gaps = 3/381 (0%)
Query: 51 LRVMA--CSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD 108
+R MA SG Q+D+SLSPRV A+KPSKT+AITD ATAL QAGV VI LAAGEPDF+
Sbjct: 65 IRAMAETDSGNGVPQLDISLSPRVAALKPSKTMAITDLATALKQAGVPVIGLAAGEPDFN 124
Query: 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168
TP +AEAGI AI++G+TRYTPNAGT+E+R+AICHKLKEENGLSYTPDQILVSNGAKQ I
Sbjct: 125 TPDAVAEAGIKAIQDGYTRYTPNAGTMEIRTAICHKLKEENGLSYTPDQILVSNGAKQCI 184
Query: 169 LQA-VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227
+ A VLAVCSPGDEVIIPAPFWVSY EMAR+ADATPVI+PT +S++FLL+P+V SKL E
Sbjct: 185 MAAAVLAVCSPGDEVIIPAPFWVSYTEMARLADATPVIIPTLLSDDFLLNPEVFSSKLNE 244
Query: 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287
SRLLILCSPSNPTGSVYP+ LL+EIA+IVAKHP+LLVLSDEIYEHI+Y PA HTSFASL
Sbjct: 245 NSRLLILCSPSNPTGSVYPRELLEEIAKIVAKHPKLLVLSDEIYEHIMYPPAKHTSFASL 304
Query: 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 347
PGMWERTLTVNGFSKAFAMTGWRLGY+AGPKHFV AC +IQSQ TSGASSISQKAGVAAL
Sbjct: 305 PGMWERTLTVNGFSKAFAMTGWRLGYLAGPKHFVTACGRIQSQSTSGASSISQKAGVAAL 364
Query: 348 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 407
LGYAG E VS MVKA+RERRDFLV+ +EGVK+ PQGAFYLF DFS+YYG+E E F
Sbjct: 365 ALGYAGSEAVSTMVKAYRERRDFLVQRLQAMEGVKLPVPQGAFYLFPDFSSYYGTEVEDF 424
Query: 408 GKIENSESLCRYLLDKAQVLL 428
G I SE+LCR+ L+KAQV L
Sbjct: 425 GVINGSEALCRFFLEKAQVAL 445
|
Prokaryotic-type aspartate aminotransferase. Specific for aspartate and no activity with glutamine, asparagine, alanine, histidine, leucine, methionine, lysine, arginine, tryptophan, tyrosine, phenylalanine or kynureine. Pinus pinaster (taxid: 71647) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q02635|AATA_RHIME Aspartate aminotransferase A OS=Rhizobium meliloti (strain 1021) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/360 (43%), Positives = 216/360 (60%), Gaps = 4/360 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ ++ VKPS T+A++ +A L G VI L AGEPDFDTP I +A I+AI G T+
Sbjct: 4 LADALSRVKPSATIAVSQKARELKAKGRDVIGLGAGEPDFDTPDNIKKAAIDAIDRGETK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP +G ELR AI K K EN L YT Q +V G KQ + A +A +PGDEV+IPAP
Sbjct: 64 YTPVSGIPELREAIAKKFKRENNLDYTAAQTIVGTGGKQILFNAFMATLNPGDEVVIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYPEM + TPV +PTR NF L + L+ +T K++ + SPSNP+G+ Y
Sbjct: 124 YWVSYPEMVALCGGTPVFVPTRQENNFKLKAEDLDRAITPKTKWFVFNSPSNPSGAAYSH 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L + ++ KHP + VL+D++YEH+ Y + + PG++ERTLT+NG SKA+AM
Sbjct: 184 EELKALTDVLMKHPHVWVLTDDMYEHLTYGDFRFATPVEVEPGLYERTLTMNGVSKAYAM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AGP H + A + IQ Q TSGA+SI+Q A V AL + + + + F+
Sbjct: 244 TGWRIGYAAGPLHLIKAMDMIQGQQTSGAASIAQWAAVEALN---GPQDFIGRNKEIFQG 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD +V + +G+ P+GAFY++ + G A IE E LL+ V
Sbjct: 301 RRDLVVSMLNQAKGISCPTPEGAFYVYPSCAGLIGKTAPSGKVIETDEDFVSELLETEGV 360
|
Required for symbiotic nitrogen fixation. Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q1RGV0|AAT_RICBR Aspartate aminotransferase OS=Rickettsia bellii (strain RML369-C) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 158/360 (43%), Positives = 221/360 (61%), Gaps = 4/360 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S ++NA+KPS T+A+ + L +AG+ +I L AGEPDFDTP I EA I AI++GFT+
Sbjct: 4 ISTQLNAIKPSPTLAVVRKTLELKRAGIDIIALGAGEPDFDTPDNIKEAAIKAIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI K K EN + Y ++I+VS G KQ I +A + GDEVIIPAP
Sbjct: 64 YTNVEGIPALKEAIQAKFKRENNIDYDLEEIIVSTGGKQVIYNLFMASLNKGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M +A+ TPV I NF L + LE +T K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVLLAEGTPVFANCGIESNFKLSGEALEQLITPKTKWLIINSPSNPTGASYSH 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ L IA ++ KHP + V+SD+IYEHI + + A + P + +R TVNG SKA++M
Sbjct: 184 SELKNIAEVLRKHPYVNVMSDDIYEHITFDGFKFYTLAEIAPDLKDRIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A V AL G G +++ F +
Sbjct: 244 TGWRIGYGAGSKALIKAMTIIQSQSTSNPCSISQVAAVEALN-GVQG--YIAQNALNFEK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLFI +G++ + I NS YLL++A+V
Sbjct: 301 KRDLALSILQRVKYFECYKPEGAFYLFIKCDKIFGAKTKSGKVINNSNDFGEYLLEEAKV 360
|
Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9ZE56|AAT_RICPR Aspartate aminotransferase OS=Rickettsia prowazekii (strain Madrid E) GN=aatA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/360 (42%), Positives = 220/360 (61%), Gaps = 4/360 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R+N++KPS T+A+ + L +AGV++I L AGEPDFDTP I E I +I++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVNIIALGAGEPDFDTPDNIKEVAITSIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI +K K EN + Y D+I+VS G KQ I +A GDEVIIP P
Sbjct: 64 YTNVDGIPLLKQAIKNKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSVEALEHSITDKTKWLIINSPSNPTGAGYNC 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+ + K+P + ++SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 KELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + F++
Sbjct: 244 TGWRIGYGAGSKALIKAMTIIQSQSTSNPCSISQMAAIEALN---GTQDYIKSNALNFQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + E+ + +P+GAFYLF+ +G++ + I NS + YLL++A+V
Sbjct: 301 KRDLALSILEEVTYFECYKPEGAFYLFVKCDKIFGTKTKSGRIIANSNNFSEYLLEEAKV 360
|
Rickettsia prowazekii (strain Madrid E) (taxid: 272947) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q4UND3|AAT_RICFE Aspartate aminotransferase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 152/360 (42%), Positives = 218/360 (60%), Gaps = 4/360 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R+N++KPS T+A+ + L +AGV +I L AGEPDFDTP I EA I AI++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVDIIALGAGEPDFDTPDNIKEAAIKAIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI K K EN + Y D+I+VS G KQ I +A GD+VIIPAP
Sbjct: 64 YTNVEGMPLLKQAIKDKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDKVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNF 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+++ K+P + V+SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 EELENIAKVLRKYPHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY G K + A IQSQ TS SISQ A + +L + + F++
Sbjct: 244 TGWRIGYGVGSKALIKAMTIIQSQSTSNPCSISQMAAIESLN---GPQDYIKPNALNFQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLF+ +G + + I NS YLL++A+V
Sbjct: 301 KRDLALSILKRVKYFECYKPEGAFYLFVKCDKIFGHKTKSGKIIANSNDFAEYLLEEAKV 360
|
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q68XV9|AAT_RICTY Aspartate aminotransferase OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 219/360 (60%), Gaps = 4/360 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R+N++KPS T+A+ + L +AGV++I L AGEPDFDTP I E I +I++GFT+
Sbjct: 4 ISTRLNSIKPSPTLAVVKKTLELKKAGVNIIALGAGEPDFDTPDNIKEVAITSIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI +K K EN + Y D+I+VS G KQ I +A GDEVIIP P
Sbjct: 64 YTNVDGIPLLKQAIKNKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDKGDEVIIPVP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TP+ + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPIFVNCGIENNFKLTVEALERSITDKTKWLIINSPSNPTGAGYNC 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+ + K+P + ++SD+IYEHI + + A + P + ER TVNG SKA++M
Sbjct: 184 KELENIAKTLRKYPNVNIMSDDIYEHITFDDFKFYTLAQIAPDLKERIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + F++
Sbjct: 244 TGWRIGYGAGSKALIKAMTVIQSQSTSNPCSISQMAAIEALN---GTQDYIKPNALNFQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLF+ +G++ + I NS YLL++A+V
Sbjct: 301 KRDLALSILEKVIYFECYKPEGAFYLFVKCDKIFGTKTKSGKIIANSNHFSEYLLEEAKV 360
|
Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q55128|AAT_SYNY3 Aspartate aminotransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=aspC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 208/331 (62%), Gaps = 4/331 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV+ V PS T+ IT +A A+ G+ V+ AGEPDF TP I EA A+ EG TR
Sbjct: 3 LTQRVSQVVPSITLEITAKAKAMRTEGIDVLSFTAGEPDFTTPPHIVEAAKLALDEGKTR 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR AI KL+E+N L Y ILV+NG K S+ +LA+ GDEVIIPAP
Sbjct: 63 YGPAAGEPALRQAIAKKLREKNNLPYEAANILVTNGGKHSLFNLMLAMIEQGDEVIIPAP 122
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+W+SYPEM R+A+ TPVI+ T + ++ + P+ L +T KS+L +L SPSNPTG+VY
Sbjct: 123 YWLSYPEMVRLAEGTPVIVNTTAATDYKITPEQLRQAITSKSKLFVLNSPSNPTGAVYTP 182
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAM 306
+ +A ++ ++ L V+SDEIYE I+Y H S ++ +++RT+ NGF+K+++M
Sbjct: 183 AEIRALAAVILEYEDLYVVSDEIYERILYDGTEHLSIGAVNDEIFQRTIISNGFAKSYSM 242
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY+AG + AC+ IQ TS + +Q +AAL V MVKAF E
Sbjct: 243 TGWRVGYLAGELPLIQACSTIQGHSTSNVCTFAQYGAIAALE---NPQTCVETMVKAFTE 299
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397
RR +V+ ++ G+ P+GAFY+F+D +
Sbjct: 300 RRQVIVEGINQIAGLSCPNPKGAFYVFVDIA 330
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q92JE7|AAT_RICCN Aspartate aminotransferase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=aatA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 216/360 (60%), Gaps = 4/360 (1%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R++++KPS T+A+ + L +AGV +I L AGEPDFDTP I E I AI++GFT+
Sbjct: 4 ISTRLSSIKPSPTLAVVKKTLELKKAGVDIITLGAGEPDFDTPDNIKEGAIKAIKDGFTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G L+ AI K K EN + Y D+I+VS G KQ I +A GDEVIIPAP
Sbjct: 64 YTNVEGMPLLKQAIKDKFKRENNIDYELDEIIVSTGGKQVIYNLFMASLDQGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M ++ TPV + I NF L + LE +T+K++ LI+ SPSNPTG+ Y
Sbjct: 124 YWVSYPDMVALSTGTPVFVNCGIENNFKLSAEALERSITDKTKWLIINSPSNPTGASYNF 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA+++ K+ + V+SD+IYEHI + + A + P + +R TVNG SKA++M
Sbjct: 184 EELENIAKVLRKYSHVNVMSDDIYEHITFDDFKFYTLAQIAPDLKKRIFTVNGVSKAYSM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY AG K + A IQSQ TS SISQ A + AL + + ++
Sbjct: 244 TGWRIGYGAGSKTLIKAMTIIQSQSTSNPCSISQMAAIEALN---GPQDYIKPNALNCQK 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+RD + ++ + +P+GAFYLF+ +G + + I NS YLL++A+V
Sbjct: 301 KRDLALSILKRVKYFECYKPEGAFYLFVKCDKIFGHKTKSGTIIANSNDFAEYLLEEAKV 360
|
Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | ||||||
| 296082448 | 476 | unnamed protein product [Vitis vinifera] | 0.981 | 0.884 | 0.823 | 0.0 | |
| 225438653 | 410 | PREDICTED: bifunctional aspartate aminot | 0.855 | 0.895 | 0.907 | 0.0 | |
| 224096225 | 410 | predicted protein [Populus trichocarpa] | 0.855 | 0.895 | 0.907 | 0.0 | |
| 395406797 | 479 | RecName: Full=Bifunctional aspartate ami | 0.932 | 0.835 | 0.823 | 0.0 | |
| 350540010 | 480 | prephenate aminotransferase [Solanum lyc | 0.932 | 0.833 | 0.816 | 0.0 | |
| 224083747 | 410 | predicted protein [Populus trichocarpa] | 0.855 | 0.895 | 0.893 | 0.0 | |
| 449469136 | 475 | PREDICTED: bifunctional aspartate aminot | 0.932 | 0.842 | 0.830 | 0.0 | |
| 356525505 | 464 | PREDICTED: bifunctional aspartate aminot | 0.857 | 0.793 | 0.880 | 0.0 | |
| 388500244 | 475 | unknown [Medicago truncatula] | 0.988 | 0.892 | 0.772 | 0.0 | |
| 357519531 | 486 | Aspartate aminotransferase [Medicago tru | 0.988 | 0.872 | 0.762 | 0.0 |
| >gi|296082448|emb|CBI21453.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/430 (82%), Positives = 385/430 (89%), Gaps = 9/430 (2%)
Query: 7 SSTSFISNPVN--FGHSKIPAQIPGSVSFPSRYLHNFNLNKSDRRV----LRVMACSG-- 58
S T+F P F I ++ SVSFPSR+ H+ +S R+V L V+ +G
Sbjct: 5 SFTTFTPKPTRLCFADQSIGSECFRSVSFPSRF-HSLKSLESTRQVQSSRLDVIVRAGGT 63
Query: 59 VEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGI 118
E+++VD+SLSPRVN+VKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTP +IAEAGI
Sbjct: 64 SEKMEVDISLSPRVNSVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPAVIAEAGI 123
Query: 119 NAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP 178
NAIREG+TRYTPNAGTLE+RSAICHKLKEENGLSYTPD+ILVSNGAKQSILQAVLAVCSP
Sbjct: 124 NAIREGYTRYTPNAGTLEVRSAICHKLKEENGLSYTPDEILVSNGAKQSILQAVLAVCSP 183
Query: 179 GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
GDEVIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKLTEKSRLLILCSPS
Sbjct: 184 GDEVIIPAPFWVSYPEMARLADATPVILPTLISENFLLDPKFLESKLTEKSRLLILCSPS 243
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298
NPTGSVY + LL+EIA+IVA+HPRLLVLSDEIYEHIIYAPATHTSFA+LPGMWERTLTVN
Sbjct: 244 NPTGSVYSRKLLEEIAQIVARHPRLLVLSDEIYEHIIYAPATHTSFAALPGMWERTLTVN 303
Query: 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358
GFSKAFAMTGWRLGY+AGPKHFVAAC KIQSQFTSGASSISQKA VAALG+GYAGGE VS
Sbjct: 304 GFSKAFAMTGWRLGYLAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGMGYAGGEAVS 363
Query: 359 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCR 418
MVKAFRERRDFLVKSFGELEGVK+SEPQGAFYLF+DFS+YYG+EAEGFG IENSESLCR
Sbjct: 364 TMVKAFRERRDFLVKSFGELEGVKISEPQGAFYLFLDFSSYYGAEAEGFGIIENSESLCR 423
Query: 419 YLLDKAQVLL 428
YLLD+AQV L
Sbjct: 424 YLLDQAQVAL 433
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438653|ref|XP_002277000.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/367 (90%), Positives = 354/367 (96%)
Query: 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 121
++VD+SLSPRVN+VKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTP +IAEAGINAI
Sbjct: 1 MEVDISLSPRVNSVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPAVIAEAGINAI 60
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
REG+TRYTPNAGTLE+RSAICHKLKEENGLSYTPD+ILVSNGAKQSILQAVLAVCSPGDE
Sbjct: 61 REGYTRYTPNAGTLEVRSAICHKLKEENGLSYTPDEILVSNGAKQSILQAVLAVCSPGDE 120
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKLTEKSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTLISENFLLDPKFLESKLTEKSRLLILCSPSNPT 180
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSVY + LL+EIA+IVA+HPRLLVLSDEIYEHIIYAPATHTSFA+LPGMWERTLTVNGFS
Sbjct: 181 GSVYSRKLLEEIAQIVARHPRLLVLSDEIYEHIIYAPATHTSFAALPGMWERTLTVNGFS 240
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
KAFAMTGWRLGY+AGPKHFVAAC KIQSQFTSGASSISQKA VAALG+GYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYLAGPKHFVAACGKIQSQFTSGASSISQKAAVAALGMGYAGGEAVSTMV 300
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
KAFRERRDFLVKSFGELEGVK+SEPQGAFYLF+DFS+YYG+EAEGFG IENSESLCRYLL
Sbjct: 301 KAFRERRDFLVKSFGELEGVKISEPQGAFYLFLDFSSYYGAEAEGFGIIENSESLCRYLL 360
Query: 422 DKAQVLL 428
D+AQV L
Sbjct: 361 DQAQVAL 367
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096225|ref|XP_002310582.1| predicted protein [Populus trichocarpa] gi|222853485|gb|EEE91032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/367 (90%), Positives = 352/367 (95%)
Query: 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 121
+Q+D+SLSPRVNAVKPSKTVAITDQATAL QAGV VIRLAAGEPDFDTPV+IAEAGINAI
Sbjct: 1 MQLDISLSPRVNAVKPSKTVAITDQATALVQAGVPVIRLAAGEPDFDTPVVIAEAGINAI 60
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
REGFTRYTPNAGT ELR AICHKLKEENG+SYTPDQILVSNGAKQSI QA+LAVCSPGDE
Sbjct: 61 REGFTRYTPNAGTQELRVAICHKLKEENGISYTPDQILVSNGAKQSIYQAMLAVCSPGDE 120
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK+LESKL+ KSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTSISENFLLDPKLLESKLSAKSRLLILCSPSNPT 180
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSVY K LL+EIARIVAKHPRLLVLSDEIYEHIIYAPATH SFASLPGMWERTLTVNGFS
Sbjct: 181 GSVYSKKLLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHISFASLPGMWERTLTVNGFS 240
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMV 300
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
KAF ERRDFL++SFGE+EGV+MSEPQGAFYLFID S+YYG+EAEGFGKIE+S+SLCRYLL
Sbjct: 301 KAFMERRDFLIRSFGEMEGVRMSEPQGAFYLFIDTSSYYGTEAEGFGKIEDSDSLCRYLL 360
Query: 422 DKAQVLL 428
D+AQV L
Sbjct: 361 DQAQVAL 367
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395406797|sp|E9L7A5.1|PAT_PETHY RecName: Full=Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; Short=PhPPA-AT; Flags: Precursor gi|305855253|gb|ADM67557.1| prephenate aminotransferase [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/408 (82%), Positives = 368/408 (90%), Gaps = 8/408 (1%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S LH F+L S RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
+AACNKIQSQFTSGASSISQKA VAALGLGYAGGE+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQV L
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVAL 436
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350540010|ref|NP_001234609.1| prephenate aminotransferase [Solanum lycopersicum] gi|311700557|gb|ADQ00383.1| prephenate aminotransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/408 (81%), Positives = 364/408 (89%), Gaps = 8/408 (1%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S L +L S R V+ ++ V+VD+SLSPRVN+VKPSKT
Sbjct: 31 PTSISFSSN-LQGLSLRSSGAKRQLYSRGTGSVVIAQNMDRVEVDLSLSPRVNSVKPSKT 89
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP IAEAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 90 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGHTRYTPNAGTMELRSA 149
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
ICHKLKEENGLSYTPDQI+VSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 150 ICHKLKEENGLSYTPDQIVVSNGAKQSIVQAVLAVCSPGDEVLIPAPYWVSYPEMARMAD 209
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
A PVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL+EIA IVA+H
Sbjct: 210 AMPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEEIAEIVARH 269
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 270 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 329
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
V+ACNK+QSQFTSGASSISQKA VAALGLGYAGGE V+ MVKAFRERRDFLVKSFGE++G
Sbjct: 330 VSACNKLQSQFTSGASSISQKAAVAALGLGYAGGEAVATMVKAFRERRDFLVKSFGEIDG 389
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDK+QV L
Sbjct: 390 VKISEPRGAFYLFIDLSSYYGVEVDGFGTINNSESLCRYLLDKSQVAL 437
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083747|ref|XP_002307109.1| predicted protein [Populus trichocarpa] gi|222856558|gb|EEE94105.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/367 (89%), Positives = 347/367 (94%)
Query: 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAI 121
+QVD+SLSPRV AVKPSKTVAITDQATALAQAGV VIRLAAGEPDFDTP +IAEAGINAI
Sbjct: 1 MQVDISLSPRVTAVKPSKTVAITDQATALAQAGVPVIRLAAGEPDFDTPAVIAEAGINAI 60
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
REG TRYTPNAGT ELR AIC KLKEENG+SY PDQILVSNGAKQSI QA+LAVCSPGDE
Sbjct: 61 REGHTRYTPNAGTQELRVAICQKLKEENGISYKPDQILVSNGAKQSIYQAILAVCSPGDE 120
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
VIIPAPFWVSYPEMAR+ADATPVILPT ISENFLLDPK LESKL EKSRLLILCSPSNPT
Sbjct: 121 VIIPAPFWVSYPEMARLADATPVILPTSISENFLLDPKQLESKLNEKSRLLILCSPSNPT 180
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSVYPK LL+EIA+IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS
Sbjct: 181 GSVYPKKLLEEIAKIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 240
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
KAFAMTGWRLGY+AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE VS MV
Sbjct: 241 KAFAMTGWRLGYLAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMV 300
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
AFRERRDFL+KSFGE+EGV +SEP GAFYLFIDFS+YYG+E EGFGKI++S++LCRYLL
Sbjct: 301 TAFRERRDFLIKSFGEMEGVGLSEPLGAFYLFIDFSSYYGAEVEGFGKIDDSDALCRYLL 360
Query: 422 DKAQVLL 428
D+AQV L
Sbjct: 361 DQAQVAL 367
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469136|ref|XP_004152277.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] gi|449484357|ref|XP_004156861.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/401 (83%), Positives = 362/401 (90%), Gaps = 1/401 (0%)
Query: 29 GSVSFPSRYLH-NFNLNKSDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQA 87
GS+SFPS+ L + + ++V VMA + + V VD+SLSPRVN+VKPSKTVAI+DQA
Sbjct: 32 GSLSFPSQRLAPSLKSVQLTKKVKPVMAGNIPDHVSVDISLSPRVNSVKPSKTVAISDQA 91
Query: 88 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147
TAL QAGV VIRLAAGEPDFDTP I EAGINAIR+G+TRYT NAGTLELR AICHKLK+
Sbjct: 92 TALVQAGVPVIRLAAGEPDFDTPAPITEAGINAIRDGYTRYTANAGTLELRQAICHKLKD 151
Query: 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 207
ENGLSYTPDQILVSNGAKQSILQAV+AVCSPGDEVIIPAPFWVSYPEMAR+ADATPVILP
Sbjct: 152 ENGLSYTPDQILVSNGAKQSILQAVVAVCSPGDEVIIPAPFWVSYPEMARLADATPVILP 211
Query: 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267
T I NFLLDPK+LESK+TEKSRLLILCSPSNPTGSVYPK LL++IA IVAKHPRLLVLS
Sbjct: 212 THIDNNFLLDPKLLESKITEKSRLLILCSPSNPTGSVYPKELLEKIAEIVAKHPRLLVLS 271
Query: 268 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327
DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV+AC KI
Sbjct: 272 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVSACGKI 331
Query: 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387
QSQ TSGASSISQKA VAALG+GYAGGE V+ MVKAFRERRD+LVKSFGEL GVK+SEPQ
Sbjct: 332 QSQSTSGASSISQKAAVAALGMGYAGGEAVATMVKAFRERRDYLVKSFGELAGVKISEPQ 391
Query: 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
GAFYLF+DFS+YYG+E EGFG I NSESLCRYLL+K QV L
Sbjct: 392 GAFYLFLDFSSYYGAEVEGFGVINNSESLCRYLLEKGQVAL 432
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525505|ref|XP_003531365.1| PREDICTED: bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/368 (88%), Positives = 346/368 (94%)
Query: 61 EVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA 120
+ VD+SLSPRVNAVKPSKTVAI+D ATAL QAGV VIRLAAGEPDFDTP IAEAGINA
Sbjct: 54 DFDVDLSLSPRVNAVKPSKTVAISDHATALFQAGVPVIRLAAGEPDFDTPAPIAEAGINA 113
Query: 121 IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD 180
IREG+TRYTPNAGT+ELR AIC KLKEENG+SYTPDQ++VSNGAKQSI QAVLAVCSPGD
Sbjct: 114 IREGYTRYTPNAGTMELRQAICRKLKEENGISYTPDQVVVSNGAKQSIAQAVLAVCSPGD 173
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240
EVIIPAPFWVSYPEMAR+ADATPVILPT IS+NFLLDPK+LESK+TE+SRLLILCSPSNP
Sbjct: 174 EVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNP 233
Query: 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300
TGSVYPK LL+EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGF
Sbjct: 234 TGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGF 293
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360
SKAFAMTGWRLGYIAGPKHFVAAC KIQSQFTSGASSI+QKA VAALGLG+AGGE VS M
Sbjct: 294 SKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTM 353
Query: 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420
VKAFRERRDFLVKSF E++GVK+SEPQGAFYLF+DFS YYG EAEGFGKIE+SESLCRYL
Sbjct: 354 VKAFRERRDFLVKSFREIDGVKISEPQGAFYLFLDFSFYYGREAEGFGKIEDSESLCRYL 413
Query: 421 LDKAQVLL 428
LD QV L
Sbjct: 414 LDVGQVAL 421
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388500244|gb|AFK38188.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/436 (77%), Positives = 372/436 (85%), Gaps = 12/436 (2%)
Query: 1 MANS-LHSSTSFISNPVNFGHSKIPA---QIPGSVSFPSRYLHNF----NLNKSDRRVLR 52
MAN+ LH++T+ ++F +PA S+SF S L F + +RR
Sbjct: 1 MANTFLHNNTTCT---ISFPDKSLPAISVSRHRSLSFSSN-LSTFPKMSTAVEQNRRETI 56
Query: 53 VMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL 112
++ E++V +SLSPRVNAVKPS+TVAITDQATAL QAGV VIRLAAGEPDFDTP +
Sbjct: 57 IVKSKSDSELEVGISLSPRVNAVKPSRTVAITDQATALVQAGVPVIRLAAGEPDFDTPAV 116
Query: 113 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172
IAEAG+NAI EG+TRYTPNAGTLE+R AICHKLKEENGL YTPDQI+V+NGAKQSI QAV
Sbjct: 117 IAEAGVNAICEGYTRYTPNAGTLEIRQAICHKLKEENGLDYTPDQIVVTNGAKQSITQAV 176
Query: 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 232
+AVCSPGDEVIIPAPFWVSYPEMAR+ADATPVILPT IS NFLLDPK+LESK+TEKSRLL
Sbjct: 177 IAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISNNFLLDPKLLESKITEKSRLL 236
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
ILCSPSNPTGSVYPK LL+EIA+IVAKHPRLLV+SDEIYEHIIYAP THTSFASLP MW
Sbjct: 237 ILCSPSNPTGSVYPKYLLEEIAKIVAKHPRLLVISDEIYEHIIYAPTTHTSFASLPRMWN 296
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
RTLTVNGFSKAFAMTGWRLGYIAGPKHF+AA KIQSQFTSG SSISQKAGVAALGLGYA
Sbjct: 297 RTLTVNGFSKAFAMTGWRLGYIAGPKHFIAAVGKIQSQFTSGPSSISQKAGVAALGLGYA 356
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412
GGE VS MVKA RERRD+LVKSF E++GVK+SEPQGAFYLFIDFS+YYG EAEGFGKIEN
Sbjct: 357 GGEAVSTMVKALRERRDYLVKSFSEIDGVKISEPQGAFYLFIDFSSYYGKEAEGFGKIEN 416
Query: 413 SESLCRYLLDKAQVLL 428
SES CRYLLDK QV L
Sbjct: 417 SESFCRYLLDKGQVAL 432
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519531|ref|XP_003630054.1| Aspartate aminotransferase [Medicago truncatula] gi|355524076|gb|AET04530.1| Aspartate aminotransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/447 (76%), Positives = 375/447 (83%), Gaps = 23/447 (5%)
Query: 1 MANS-LHSSTSFISNPVNFGHSKIPA---QIPGSVSFPSRYLHNF----NLNKSDRRVLR 52
MAN+ LH++T+ ++F +PA S+SF S L F + +RR
Sbjct: 1 MANTFLHNNTTCT---ISFPDKSLPAISVSRHRSLSFSSN-LSTFPKMSTAVEQNRRETI 56
Query: 53 VMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL 112
++ E++VD+SLSPRVNAVKPS+TVAITDQATAL QAGV VIRLAAGEPDFDTP +
Sbjct: 57 IVKSKSDSELEVDISLSPRVNAVKPSRTVAITDQATALVQAGVPVIRLAAGEPDFDTPAV 116
Query: 113 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172
IAEAG+NAI EG TRYTPNAGTLE+R AICHKLKEENGL YTPDQI+V+NGAKQSI QAV
Sbjct: 117 IAEAGVNAICEGHTRYTPNAGTLEIRQAICHKLKEENGLDYTPDQIVVTNGAKQSITQAV 176
Query: 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 232
+AVCSPGDEVIIPAPFWVSYPEMAR+ADATPVILPT IS NFLLDPK+LESK+TEKSRLL
Sbjct: 177 IAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTSISNNFLLDPKLLESKITEKSRLL 236
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL-----------VLSDEIYEHIIYAPATH 281
ILCSPSNPTGSVYPK LL+EIA+IVAKHPRLL V+SDEIYEHIIYAPATH
Sbjct: 237 ILCSPSNPTGSVYPKYLLEEIAKIVAKHPRLLVKLYISDEITSVISDEIYEHIIYAPATH 296
Query: 282 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQK 341
TSFASLP MW RTLTVNGFSKAFAMTGWRLGYIAGPKHF+AA KIQSQFTSG SSISQK
Sbjct: 297 TSFASLPRMWNRTLTVNGFSKAFAMTGWRLGYIAGPKHFIAAVGKIQSQFTSGPSSISQK 356
Query: 342 AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401
AGVAALGLGYAGGE VS MVKAFRERRD+LVKSF E++GVK+SEPQGAFYLFIDFS+YYG
Sbjct: 357 AGVAALGLGYAGGEAVSTMVKAFRERRDYLVKSFSEIDGVKISEPQGAFYLFIDFSSYYG 416
Query: 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428
EAEGFGKIENSESLCRYLLDK QV L
Sbjct: 417 KEAEGFGKIENSESLCRYLLDKGQVAL 443
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | ||||||
| UNIPROTKB|E9L7A5 | 479 | E9L7A5 "Bifunctional aspartate | 0.932 | 0.835 | 0.794 | 6.4e-170 | |
| TAIR|locus:2060435 | 475 | AAT "AT2G22250" [Arabidopsis t | 0.983 | 0.888 | 0.710 | 5.6e-155 | |
| TIGR_CMR|CBU_0517 | 423 | CBU_0517 "aspartate aminotrans | 0.822 | 0.834 | 0.449 | 4.3e-77 | |
| TIGR_CMR|SPO_1264 | 400 | SPO_1264 "aspartate aminotrans | 0.829 | 0.89 | 0.422 | 4.5e-75 | |
| TIGR_CMR|GSU_1242 | 399 | GSU_1242 "aspartate aminotrans | 0.839 | 0.902 | 0.436 | 9.3e-75 | |
| UNIPROTKB|Q0BXZ8 | 403 | aatA "Aspartate aminotransfera | 0.841 | 0.895 | 0.410 | 2.5e-74 | |
| TIGR_CMR|ECH_0732 | 398 | ECH_0732 "aspartate aminotrans | 0.825 | 0.889 | 0.411 | 1.4e-69 | |
| UNIPROTKB|Q2GK59 | 394 | aspC "Aspartate aminotransfera | 0.811 | 0.883 | 0.394 | 8.5e-65 | |
| TIGR_CMR|APH_0660 | 394 | APH_0660 "aspartate aminotrans | 0.811 | 0.883 | 0.394 | 8.5e-65 | |
| TIGR_CMR|CHY_1491 | 392 | CHY_1491 "aspartate aminotrans | 0.804 | 0.880 | 0.394 | 2e-63 |
| UNIPROTKB|E9L7A5 E9L7A5 "Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase" [Petunia x hybrida (taxid:4102)] | Back alignment and assigned GO terms |
|---|
Score = 1652 (586.6 bits), Expect = 6.4e-170, P = 6.4e-170
Identities = 324/408 (79%), Positives = 356/408 (87%)
Query: 28 PGSVSFPSRYLHNFNLNKS-------DRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKT 80
P S+SF S LH F+L S RR V+ +++V+VD+SLSPRVN+VKPSKT
Sbjct: 30 PKSISFSSN-LHTFSLKSSGSRRQLYSRRTGAVVIMQSMDKVEVDISLSPRVNSVKPSKT 88
Query: 81 VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140
VAITDQATAL QAGV VIRLAAGEPDFDTP I EAGINAIREG TRYTPNAGT+ELRSA
Sbjct: 89 VAITDQATALVQAGVPVIRLAAGEPDFDTPAPIVEAGINAIREGHTRYTPNAGTMELRSA 148
Query: 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
I HKLKEENGLSYTPDQILVSNGAKQSI+QAVLAVCSPGDEV+IPAP+WVSYPEMAR+AD
Sbjct: 149 ISHKLKEENGLSYTPDQILVSNGAKQSIIQAVLAVCSPGDEVLIPAPYWVSYPEMARLAD 208
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
ATPVILPT ISE+FLLDPK+LESKLTEKSRLLILCSPSNPTGSVYP+ LL++IA IVA+H
Sbjct: 209 ATPVILPTSISEDFLLDPKLLESKLTEKSRLLILCSPSNPTGSVYPRKLLEQIAEIVARH 268
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
PRLLV+SDEIYEHIIYAPATHTSFASLPGMW+RTLTVNGFSKAFAMTGWRLGYIAGPKHF
Sbjct: 269 PRLLVISDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHF 328
Query: 321 VAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERRDFLVKSFGELEG 380
+AACNKIQSQFTSGASSISQK E+V+ MVK+FRERRD+LVKSFGE+EG
Sbjct: 329 IAACNKIQSQFTSGASSISQKAAVAALGLGYAGGELVATMVKSFRERRDYLVKSFGEIEG 388
Query: 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
VK+SEP+GAFYLFID S+YYG E +GFG I NSESLCRYLLDKAQV L
Sbjct: 389 VKISEPRGAFYLFIDLSSYYGVEVDGFGSINNSESLCRYLLDKAQVAL 436
|
|
| TAIR|locus:2060435 AAT "AT2G22250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
Identities = 304/428 (71%), Positives = 345/428 (80%)
Query: 7 SSTSFISNPVNFGHSKIPAQIP-GSVSFPSRYLHNFNLNKSDRRVLRVMACSGVEEVQ-- 63
SS + IS+ G S ++ P GSV F +F+ KS R+ A + + +
Sbjct: 5 SSVAVISSAAARGESFPDSKKPIGSVRFQQPLRLSFSYCKSGNMSSRICAMAKPNDAETL 64
Query: 64 ---VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA 120
VD+SLSPRV ++KPSKT+ ITD A L Q+GV VIRLAAGEPDFDTP ++AEAGINA
Sbjct: 65 SSSVDMSLSPRVQSLKPSKTMVITDLAATLVQSGVPVIRLAAGEPDFDTPKVVAEAGINA 124
Query: 121 IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD 180
IREGFTRYT NAG ELR AIC KLKEENGLSY PDQILVSNGAKQS+LQAVLAVCSPGD
Sbjct: 125 IREGFTRYTLNAGITELREAICRKLKEENGLSYAPDQILVSNGAKQSLLQAVLAVCSPGD 184
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240
EVIIPAP+WVSY E AR+ADATPV++PT+IS NFLLDPK LESKLTEKSRLLILCSPSNP
Sbjct: 185 EVIIPAPYWVSYTEQARLADATPVVIPTKISNNFLLDPKDLESKLTEKSRLLILCSPSNP 244
Query: 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300
TGSVYPK+LL+EIARI+AKHPRLLVLSDEIYEHIIYAPATHTSFASLP M+ERTLTVNGF
Sbjct: 245 TGSVYPKSLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTVNGF 304
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKM 360
SKAFAMTGWRLGY+AGPKH VAAC+K+Q Q +SGASSI+QK E V++M
Sbjct: 305 SKAFAMTGWRLGYLAGPKHIVAACSKLQGQVSSGASSIAQKAGVAALGLGKAGGETVAEM 364
Query: 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420
VKA+RERRDFLVKS G+++GVK+SEPQGAFYLFIDFS YYGSEAEGFG I +S SL Y
Sbjct: 365 VKAYRERRDFLVKSLGDIKGVKISEPQGAFYLFIDFSAYYGSEAEGFGLINDSSSLALYF 424
Query: 421 LDKAQVLL 428
LDK QV +
Sbjct: 425 LDKFQVAM 432
|
|
| TIGR_CMR|CBU_0517 CBU_0517 "aspartate aminotransferase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 163/363 (44%), Positives = 231/363 (63%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
DV LS R ++PS T+A++D A L G VI L+AGEPDFDTP I ++ I AI+EG
Sbjct: 32 DV-LSVRAQQLEPSVTLAVSDLARELLNKGHDVISLSAGEPDFDTPDFIKQSAIKAIQEG 90
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
FT+YT GT L++AI HKLK +N L+Y P +ILVS GAKQSI ++ + GDE II
Sbjct: 91 FTKYTNVDGTPALKAAIVHKLKRDNHLNYEPSEILVSGGAKQSIYNVLMGTLNAGDEAII 150
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
PAP+WVSYP M ++A+A P+I+ I +NF L P L +T +SRLLIL SP+NP+G
Sbjct: 151 PAPYWVSYPPMVQLAEAKPIIISATIDQNFKLTPGQLSQAITPQSRLLILNSPNNPSGVA 210
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKA 303
Y ++ L +A ++ +HP++L+LSDEIYE+I++ + ++ P + +RT+ +NG SKA
Sbjct: 211 YTESELKALADVLMEHPQILILSDEIYEYILWGQNRFVNILNVCPELRDRTIIINGASKA 270
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKA 363
+AMTGWR+GY AGPK + A KIQSQ TS +SI+Q + M +A
Sbjct: 271 YAMTGWRIGYAAGPKSIIQAMKKIQSQSTSSPNSIAQVAATTALGAQRGDF---AYMYEA 327
Query: 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
++ R D ++K+ +++GV GAFYLF D S + + G +E+ L YLLDK
Sbjct: 328 YKTRHDLVLKALNQMKGVHCIPADGAFYLFPDVS----AAIQQLG-LEDDIKLGTYLLDK 382
Query: 424 AQV 426
+V
Sbjct: 383 TKV 385
|
|
| TIGR_CMR|SPO_1264 SPO_1264 "aspartate aminotransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 152/360 (42%), Positives = 222/360 (61%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS ++ VKPS TVA+T +A L G +I L+AGEPDFDTP I +A AI G T+
Sbjct: 4 LSATLSRVKPSPTVAMTAKAAELKAGGRDIIGLSAGEPDFDTPQNIKDAATAAIAAGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G +EL+ A+C K++ ++GLSYTP Q+ V +G KQ++ A++A +PGDEVIIPAP
Sbjct: 64 YTAPDGIIELKQAVCAKMQRDHGLSYTPAQVSVGSGGKQTLYNALMATLNPGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M + TPV++ T + F L P LE+ +T +++ I SPSNPTG+ Y +
Sbjct: 124 YWVSYPDMVLLGGGTPVVVETALESAFKLTPAQLEAAITPRTKWFIFNSPSNPTGAGYSR 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ L + ++ +HP + V+SD++YEH+ Y + A + PG++ERTLT NG SKA+AM
Sbjct: 184 DELKGLTDVLMRHPHVWVMSDDMYEHLAYDGFAFCTPAQVEPGLYERTLTCNGTSKAYAM 243
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GY AGP +AA KIQSQ TS +ISQ E ++ F+
Sbjct: 244 TGWRIGYAAGPVGLIAAMRKIQSQSTSNPCTISQ---WAAVEALNGTQEFLAPNNALFKR 300
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD ++ +EG+ P+GAFY++ + G +I++ E+ C LL++A V
Sbjct: 301 RRDLVLSMLNAIEGIDCPTPEGAFYVYPSIAGLIGKTTPKGTRIDSDETFCTALLEEADV 360
|
|
| TIGR_CMR|GSU_1242 GSU_1242 "aspartate aminotransferase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 159/364 (43%), Positives = 220/364 (60%)
Query: 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF 125
+ L+ RVN ++PS T++I +A AL G+ V+ AGEPDFDTP I EAG AI GF
Sbjct: 1 MKLADRVNKIQPSPTLSIDAKAKALKAQGIDVVGFGAGEPDFDTPANIKEAGKKAIDAGF 60
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185
T+Y P G +L+ AI K+K ++GL YT D+I V+ GAK ++ A+ GDEVIIP
Sbjct: 61 TKYMPVGGADDLKDAIIAKMKRDHGLEYTRDEISVACGAKHTLYNISQALIQEGDEVIIP 120
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P+WVSYP+ +A TPV + T S F + + LE +T ++ +IL SP NPTGS Y
Sbjct: 121 GPYWVSYPDQIVLAGGTPVFIMTDESTGFKITAEQLEKAITPRTVYVILNSPCNPTGSTY 180
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAF 304
K+ L +A ++ KHP + V+SD+IYE ++Y + + P + +RT+ VNG SKA+
Sbjct: 181 TKDELKALAAVLLKHPHVYVVSDDIYEKLLYDGLEFCNIPMACPELKDRTIIVNGVSKAY 240
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAF 364
+MTGWR+GY GPK +AA K+QSQ TS A+SI+QK E V++MVK F
Sbjct: 241 SMTGWRIGYACGPKALMAAMTKMQSQSTSNATSIAQKASVEALNGPQ---EPVAEMVKEF 297
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
+RR ++V + GV + GAFY F +FS YG KIENS YLL+ A
Sbjct: 298 EKRRTYIVDRLNAIPGVTCFKSTGAFYAFPNFSGVYGKTTPAGKKIENSSDFAAYLLEDA 357
Query: 425 QVLL 428
+V L
Sbjct: 358 KVAL 361
|
|
| UNIPROTKB|Q0BXZ8 aatA "Aspartate aminotransferase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
|---|
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 150/365 (41%), Positives = 222/365 (60%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
D+ LS + VKPS T+A+T +A + + G+ VI L AGEPDFDTP I EA I A+REG
Sbjct: 4 DIRLSDAIARVKPSATIAVTTKANEMKRQGLDVIGLGAGEPDFDTPENIKEAAIRAMREG 63
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
T+YTP+ G EL+ AI K ENGL+Y P Q+ VS G K + A +A + GDEV+I
Sbjct: 64 KTKYTPSDGIPELKEAIVAKFARENGLTYKPSQVNVSPGGKAVLFNAFMATLNAGDEVVI 123
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
PAP+WVSYPEM + ATPV +P + L P+ LE+ +T K++ LIL SPSNPTG+
Sbjct: 124 PAPYWVSYPEMVLLCGATPVAVPCGADTAYKLSPEKLEAAITPKTKWLILNSPSNPTGAA 183
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKA 303
Y L +A ++ +HP++ +L+D++YEH++Y + + A + P +++RTLT+NG SKA
Sbjct: 184 YTGAELKALADVLLRHPQVWILTDDMYEHLVYDGFEYKTIAQVEPALYDRTLTMNGVSKA 243
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKA 363
+AMTGWR+GY AGP+ + A K+ Q TS SISQ V A
Sbjct: 244 YAMTGWRIGYAAGPEKLIGAMRKVMDQSTSNPCSISQWASVEALNGPQDFLPVFRA---A 300
Query: 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
+ +RR+ +V + G+ +P+GAFY++ + G + G I++ ++ LL++
Sbjct: 301 YAKRRNLMVDGLNQAAGIVCPKPEGAFYVYPSCAGLIGKKTAGGAVIDSDKTFAAELLEQ 360
Query: 424 AQVLL 428
+V +
Sbjct: 361 EKVAI 365
|
|
| TIGR_CMR|ECH_0732 ECH_0732 "aspartate aminotransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 148/360 (41%), Positives = 213/360 (59%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
++ R+ +KPS T+ I +QA L +GV VI L+AGEPDFDTP I +A I+AI G T+
Sbjct: 4 IAERMGCIKPSPTLEIANQAQKLKMSGVDVISLSAGEPDFDTPQHIKQAAIDAINSGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G +EL+ I + K+++ L Y +QI V NGAKQ I +A + GDEVIIP+P
Sbjct: 64 YTAVNGIIELKKVIIDRFKQDHDLIYNVNQISVGNGAKQCIYNLFMATINSGDEVIIPSP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP++ +I+ PVI+ E F L P +LES +TEK++ LI+ SP+NPTG VY
Sbjct: 124 YWVSYPDVVKISGGNPVIVDC--GETFKLTPDILESVITEKTKWLIMNSPNNPTGLVYTY 181
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L IA ++ K+P + V++D+IY IIY + A + P +++R T+NG SKA+AM
Sbjct: 182 EELKSIAEVLLKYPNIYVMTDDIYSKIIYDDLEFFTIAQVEPRLYDRVFTINGVSKAYAM 241
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GYIAG ++A + IQSQ T+ +SI+Q E + + K F
Sbjct: 242 TGWRIGYIAGDSRVISAISVIQSQSTTNPNSIAQ---FASIQALAGDQEFLKERNKIFAA 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD +V + + +PQGAFY+FI G I ++ +YLL+ V
Sbjct: 299 RRDMMVDMVNNTSLLSVKKPQGAFYVFISCKKLIGKSTRNGLVINSAMDFTKYLLEDYNV 358
|
|
| UNIPROTKB|Q2GK59 aspC "Aspartate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 141/357 (39%), Positives = 208/357 (58%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS R+N +KPS T+ ++ L G+ +I L AGEPDFDTP + +A I AI G T+
Sbjct: 2 LSERMNCIKPSPTLELSRLTLELRAQGLDIISLGAGEPDFDTPDHVKDAAIAAINAGKTK 61
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP G EL+ +I ++ + G+ Y +Q+LV GAKQ I +A + GDEVIIPAP
Sbjct: 62 YTPVEGIPELKDSIIRSVRRDYGIDYVANQVLVGAGAKQCIYNLFMATINEGDEVIIPAP 121
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M +IA PVI+ + L P++L +T K++ LI+ SPSNPTG+VY +
Sbjct: 122 YWVSYPDMVKIAGGAPVIV--NCGDYLKLTPELLRGAITPKTKWLIINSPSNPTGAVYSR 179
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L IA ++ +H +LV++D+IY ++Y A + P +++R VNG SKA++M
Sbjct: 180 EELAAIAEVLKQHKHVLVITDDIYAKLVY-DAEFCGILQVEPSLYDRVYIVNGVSKAYSM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GYI G + A + IQSQ T+ A+SI+Q + +KAF
Sbjct: 239 TGWRIGYILGNAEAIKAVSTIQSQSTTNANSIAQYAAIAALDGDQSFLDT---RIKAFAR 295
Query: 367 RRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 422
RRD ++ + GV ++ PQGAFY+FI G A G I + + ++LL+
Sbjct: 296 RRDRVMDAVLS-SGVLQADVPQGAFYVFISCGNAIGKHAPKVGVINDGSDMAKHLLN 351
|
|
| TIGR_CMR|APH_0660 APH_0660 "aspartate aminotransferase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 141/357 (39%), Positives = 208/357 (58%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS R+N +KPS T+ ++ L G+ +I L AGEPDFDTP + +A I AI G T+
Sbjct: 2 LSERMNCIKPSPTLELSRLTLELRAQGLDIISLGAGEPDFDTPDHVKDAAIAAINAGKTK 61
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP G EL+ +I ++ + G+ Y +Q+LV GAKQ I +A + GDEVIIPAP
Sbjct: 62 YTPVEGIPELKDSIIRSVRRDYGIDYVANQVLVGAGAKQCIYNLFMATINEGDEVIIPAP 121
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYP+M +IA PVI+ + L P++L +T K++ LI+ SPSNPTG+VY +
Sbjct: 122 YWVSYPDMVKIAGGAPVIV--NCGDYLKLTPELLRGAITPKTKWLIINSPSNPTGAVYSR 179
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L IA ++ +H +LV++D+IY ++Y A + P +++R VNG SKA++M
Sbjct: 180 EELAAIAEVLKQHKHVLVITDDIYAKLVY-DAEFCGILQVEPSLYDRVYIVNGVSKAYSM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRE 366
TGWR+GYI G + A + IQSQ T+ A+SI+Q + +KAF
Sbjct: 239 TGWRIGYILGNAEAIKAVSTIQSQSTTNANSIAQYAAIAALDGDQSFLDT---RIKAFAR 295
Query: 367 RRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 422
RRD ++ + GV ++ PQGAFY+FI G A G I + + ++LL+
Sbjct: 296 RRDRVMDAVLS-SGVLQADVPQGAFYVFISCGNAIGKHAPKVGVINDGSDMAKHLLN 351
|
|
| TIGR_CMR|CHY_1491 CHY_1491 "aspartate aminotransferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 142/360 (39%), Positives = 210/360 (58%)
Query: 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY 128
S R + S T+AI +A L + G VI GEPDFDTP I EA INA+R+G T+Y
Sbjct: 3 SERALQIGESPTLAIDKKAKELIKQGKKVINFGVGEPDFDTPEYIKEAAINALRQGKTKY 62
Query: 129 TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188
TP G ELR I L + G++Y +++V+ GAK + + +PGDEVIIP P+
Sbjct: 63 TPVGGIPELRKKIAEYLTQRTGVNYEDQEVVVTCGAKHGLYNIFQVILNPGDEVIIPVPY 122
Query: 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248
WVSY E ++A P+++PT ENF L P L + L +++ +I+ SPSNPTG VY +
Sbjct: 123 WVSYVEQVKLAGGVPILVPT--GENFKLAPDKLINYLNNRTKAIIINSPSNPTGVVYSFD 180
Query: 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308
L + R++ K +L+++DEIYE I ++ + A+ P + E+T VNGFSK+ +MTG
Sbjct: 181 ELKSLGRLL-KDREILIIADEIYERIYFSEKPISFVAANPELKEKTFIVNGFSKSHSMTG 239
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKXXXXXXXXXXXXXEVVSKMVKAFRERR 368
WRLGY+A + + A ++QS TS +S +Q + V KMV+ F++RR
Sbjct: 240 WRLGYVAASRQYAAKLIELQSHQTSNPTSFAQ---WGALAALTIEDDSVEKMVQEFKKRR 296
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
DF+V EL+ +K+ EP GAFY+F +G + G KI N+ +D A+++L
Sbjct: 297 DFVVSRLQELK-LKVIEPAGAFYVFPRIDNCFGKKHSG--KIINTS------IDFAEIML 347
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q02635 | AATA_RHIME | 2, ., 6, ., 1, ., 1 | 0.4333 | 0.8298 | 0.89 | yes | no |
| Q1RGV0 | AAT_RICBR | 2, ., 6, ., 1, ., 1 | 0.4388 | 0.8298 | 0.8922 | yes | no |
| Q4UND3 | AAT_RICFE | 2, ., 6, ., 1, ., 1 | 0.4222 | 0.8298 | 0.8704 | yes | no |
| Q5F4K8 | PAT_PINPS | 2, ., 6, ., 1, ., 1 | 0.7742 | 0.8811 | 0.7682 | N/A | no |
| E9L7A5 | PAT_PETHY | 2, ., 6, ., 1, ., 7, 9 | 0.8235 | 0.9324 | 0.8350 | N/A | no |
| O67781 | AAT_AQUAE | 2, ., 6, ., 1, ., 1 | 0.4055 | 0.8158 | 0.8883 | yes | no |
| Q9SIE1 | PAT_ARATH | 2, ., 6, ., 1, ., 7, 9 | 0.7365 | 0.9860 | 0.8905 | yes | no |
| Q68XV9 | AAT_RICTY | 2, ., 6, ., 1, ., 1 | 0.4166 | 0.8298 | 0.8922 | yes | no |
| Q9ZE56 | AAT_RICPR | 2, ., 6, ., 1, ., 1 | 0.4222 | 0.8298 | 0.8922 | yes | no |
| Q92JE7 | AAT_RICCN | 2, ., 6, ., 1, ., 1 | 0.4166 | 0.8298 | 0.8877 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.6.1 | 0.976 |
| 4th Layer | 2.6.1.1 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 429 | |||
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 1e-172 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 1e-132 | |
| PRK06107 | 402 | PRK06107, PRK06107, aspartate aminotransferase; Pr | 1e-121 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 1e-98 | |
| PRK07682 | 378 | PRK07682, PRK07682, hypothetical protein; Validate | 3e-96 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 2e-84 | |
| PRK08361 | 391 | PRK08361, PRK08361, aspartate aminotransferase; Pr | 1e-76 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 3e-75 | |
| PRK06348 | 384 | PRK06348, PRK06348, aspartate aminotransferase; Pr | 3e-74 | |
| PRK07777 | 387 | PRK07777, PRK07777, aminotransferase; Validated | 2e-67 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 2e-67 | |
| PRK06108 | 382 | PRK06108, PRK06108, aspartate aminotransferase; Pr | 4e-67 | |
| PRK08960 | 387 | PRK08960, PRK08960, hypothetical protein; Provisio | 4e-66 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 6e-66 | |
| PRK05957 | 389 | PRK05957, PRK05957, aspartate aminotransferase; Pr | 1e-63 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 1e-62 | |
| PRK07337 | 388 | PRK07337, PRK07337, aminotransferase; Validated | 3e-57 | |
| PLN00175 | 413 | PLN00175, PLN00175, aminotransferase family protei | 2e-54 | |
| PRK06836 | 394 | PRK06836, PRK06836, aspartate aminotransferase; Pr | 1e-52 | |
| TIGR03540 | 383 | TIGR03540, DapC_direct, LL-diaminopimelate aminotr | 1e-50 | |
| PRK09082 | 386 | PRK09082, PRK09082, methionine aminotransferase; V | 8e-49 | |
| PRK09276 | 385 | PRK09276, PRK09276, LL-diaminopimelate aminotransf | 1e-47 | |
| PRK08912 | 387 | PRK08912, PRK08912, hypothetical protein; Provisio | 8e-47 | |
| PRK09265 | 404 | PRK09265, PRK09265, aminotransferase AlaT; Validat | 7e-42 | |
| COG0079 | 356 | COG0079, HisC, Histidinol-phosphate/aromatic amino | 8e-41 | |
| PRK12414 | 384 | PRK12414, PRK12414, putative aminotransferase; Pro | 6e-40 | |
| PRK07550 | 386 | PRK07550, PRK07550, hypothetical protein; Provisio | 5e-39 | |
| TIGR01141 | 346 | TIGR01141, hisC, histidinol-phosphate aminotransfe | 1e-36 | |
| PRK05942 | 394 | PRK05942, PRK05942, aspartate aminotransferase; Pr | 2e-35 | |
| TIGR01264 | 401 | TIGR01264, tyr_amTase_E, tyrosine aminotransferase | 2e-35 | |
| PRK08068 | 389 | PRK08068, PRK08068, transaminase; Reviewed | 7e-35 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 1e-34 | |
| TIGR04350 | 384 | TIGR04350, C_S_lyase_PatB, putative C-S lyase | 2e-34 | |
| TIGR01265 | 403 | TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine | 3e-34 | |
| COG1168 | 388 | COG1168, MalY, Bifunctional PLP-dependent enzyme w | 7e-34 | |
| TIGR03537 | 350 | TIGR03537, DapC, succinyldiaminopimelate transamin | 9e-33 | |
| PRK03321 | 352 | PRK03321, PRK03321, putative aminotransferase; Pro | 2e-32 | |
| PRK07681 | 399 | PRK07681, PRK07681, aspartate aminotransferase; Pr | 3e-32 | |
| PRK13355 | 517 | PRK13355, PRK13355, bifunctional HTH-domain contai | 4e-32 | |
| PRK09148 | 405 | PRK09148, PRK09148, aminotransferase; Validated | 5e-32 | |
| PRK06290 | 410 | PRK06290, PRK06290, aspartate aminotransferase; Pr | 1e-30 | |
| PRK08175 | 395 | PRK08175, PRK08175, aminotransferase; Validated | 3e-29 | |
| PRK00950 | 361 | PRK00950, PRK00950, histidinol-phosphate aminotran | 3e-27 | |
| PRK08636 | 403 | PRK08636, PRK08636, aspartate aminotransferase; Pr | 1e-26 | |
| PTZ00433 | 412 | PTZ00433, PTZ00433, tyrosine aminotransferase; Pro | 2e-25 | |
| PRK06225 | 380 | PRK06225, PRK06225, aspartate aminotransferase; Pr | 3e-25 | |
| PRK07324 | 373 | PRK07324, PRK07324, transaminase; Validated | 2e-24 | |
| PRK02731 | 367 | PRK02731, PRK02731, histidinol-phosphate aminotran | 1e-23 | |
| TIGR03538 | 393 | TIGR03538, DapC_gpp, succinyldiaminopimelate trans | 2e-23 | |
| PRK14807 | 351 | PRK14807, PRK14807, histidinol-phosphate aminotran | 2e-22 | |
| PRK14809 | 357 | PRK14809, PRK14809, histidinol-phosphate aminotran | 2e-20 | |
| PLN00143 | 409 | PLN00143, PLN00143, tyrosine/nicotianamine aminotr | 9e-20 | |
| PRK03967 | 337 | PRK03967, PRK03967, histidinol-phosphate aminotran | 3e-19 | |
| PRK09147 | 396 | PRK09147, PRK09147, succinyldiaminopimelate transa | 3e-19 | |
| PRK06207 | 405 | PRK06207, PRK06207, aspartate aminotransferase; Pr | 3e-19 | |
| TIGR03947 | 359 | TIGR03947, viomycin_VioD, capreomycidine synthase | 3e-19 | |
| PRK04781 | 364 | PRK04781, PRK04781, histidinol-phosphate aminotran | 3e-19 | |
| TIGR03542 | 402 | TIGR03542, DAPAT_plant, LL-diaminopimelate aminotr | 5e-19 | |
| TIGR01140 | 330 | TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phospha | 5e-19 | |
| PRK03158 | 359 | PRK03158, PRK03158, histidinol-phosphate aminotran | 3e-18 | |
| PLN03026 | 380 | PLN03026, PLN03026, histidinol-phosphate aminotran | 6e-18 | |
| PLN00145 | 430 | PLN00145, PLN00145, tyrosine/nicotianamine aminotr | 7e-18 | |
| PLN02187 | 462 | PLN02187, PLN02187, rooty/superroot1 | 7e-17 | |
| PRK07366 | 388 | PRK07366, PRK07366, succinyldiaminopimelate transa | 1e-16 | |
| PRK06855 | 433 | PRK06855, PRK06855, aminotransferase; Validated | 2e-16 | |
| PRK07590 | 409 | PRK07590, PRK07590, L,L-diaminopimelate aminotrans | 7e-16 | |
| PLN02656 | 409 | PLN02656, PLN02656, tyrosine transaminase | 8e-16 | |
| TIGR03539 | 357 | TIGR03539, DapC_actino, succinyldiaminopimelate tr | 2e-15 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 4e-15 | |
| PRK03317 | 368 | PRK03317, PRK03317, histidinol-phosphate aminotran | 4e-15 | |
| PLN02376 | 496 | PLN02376, PLN02376, 1-aminocyclopropane-1-carboxyl | 1e-14 | |
| PRK05166 | 371 | PRK05166, PRK05166, histidinol-phosphate aminotran | 4e-14 | |
| PTZ00377 | 481 | PTZ00377, PTZ00377, alanine aminotransferase; Prov | 1e-13 | |
| PRK07865 | 364 | PRK07865, PRK07865, N-succinyldiaminopimelate amin | 2e-13 | |
| PLN02607 | 447 | PLN02607, PLN02607, 1-aminocyclopropane-1-carboxyl | 2e-13 | |
| PRK01688 | 351 | PRK01688, PRK01688, histidinol-phosphate aminotran | 3e-13 | |
| PRK04870 | 356 | PRK04870, PRK04870, histidinol-phosphate aminotran | 7e-13 | |
| PRK02610 | 374 | PRK02610, PRK02610, histidinol-phosphate aminotran | 1e-12 | |
| PRK09275 | 527 | PRK09275, PRK09275, aspartate aminotransferase; Pr | 2e-12 | |
| TIGR03801 | 521 | TIGR03801, asp_4_decarbox, aspartate 4-decarboxyla | 8e-12 | |
| PRK01533 | 366 | PRK01533, PRK01533, histidinol-phosphate aminotran | 1e-11 | |
| PRK09105 | 370 | PRK09105, PRK09105, putative aminotransferase; Pro | 3e-11 | |
| PRK04635 | 354 | PRK04635, PRK04635, histidinol-phosphate aminotran | 4e-11 | |
| PRK05839 | 374 | PRK05839, PRK05839, hypothetical protein; Provisio | 6e-11 | |
| PRK08153 | 369 | PRK08153, PRK08153, histidinol-phosphate aminotran | 8e-10 | |
| PRK08354 | 311 | PRK08354, PRK08354, putative aminotransferase; Pro | 2e-08 | |
| PLN02231 | 534 | PLN02231, PLN02231, alanine transaminase | 3e-08 | |
| PRK14808 | 335 | PRK14808, PRK14808, histidinol-phosphate aminotran | 6e-08 | |
| PRK07392 | 360 | PRK07392, PRK07392, threonine-phosphate decarboxyl | 1e-07 | |
| PLN02368 | 407 | PLN02368, PLN02368, alanine transaminase | 1e-07 | |
| PRK08637 | 388 | PRK08637, PRK08637, hypothetical protein; Provisio | 2e-07 | |
| PRK05387 | 353 | PRK05387, PRK05387, histidinol-phosphate aminotran | 7e-07 | |
| PLN02672 | 1082 | PLN02672, PLN02672, methionine S-methyltransferase | 2e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 2e-06 | |
| PRK08056 | 356 | PRK08056, PRK08056, threonine-phosphate decarboxyl | 1e-05 | |
| cd00616 | 352 | cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s | 2e-05 | |
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 1e-04 | |
| PLN02450 | 468 | PLN02450, PLN02450, 1-aminocyclopropane-1-carboxyl | 1e-04 | |
| PRK07908 | 349 | PRK07908, PRK07908, hypothetical protein; Provisio | 3e-04 | |
| pfam01041 | 362 | pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS a | 3e-04 | |
| PRK06425 | 332 | PRK06425, PRK06425, histidinol-phosphate aminotran | 3e-04 | |
| PRK15481 | 431 | PRK15481, PRK15481, transcriptional regulatory pro | 3e-04 | |
| COG0399 | 374 | COG0399, WecE, Predicted pyridoxal phosphate-depen | 6e-04 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 8e-04 | |
| cd00615 | 294 | cd00615, Orn_deC_like, Ornithine decarboxylase fam | 0.001 | |
| COG1982 | 557 | COG1982, LdcC, Arginine/lysine/ornithine decarboxy | 0.002 | |
| PRK11658 | 379 | PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinos | 0.002 | |
| pfam01276 | 417 | pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, ma | 0.004 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 486 bits (1254), Expect = e-172
Identities = 181/361 (50%), Positives = 235/361 (65%), Gaps = 13/361 (3%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS RV+ V PS T+A+T +A L G VI L AGEPDFDTP I EA I A+ +G T+
Sbjct: 4 LSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTP AG ELR AI KLK +NGL Y P Q++V+ GAKQ++ A +A+ PGDEVIIPAP
Sbjct: 64 YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYPEM ++A PV +PT F L + LE+ +T K++ LIL SPSNPTG+VY
Sbjct: 124 YWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSP 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
L+ IA + +H + VLSDEIYE ++Y A TS ASL P + +RT+TVNGFSKA+AM
Sbjct: 184 EELEAIADVAVEHD-IWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAM 242
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFR 365
TGWRLGY AGPK + A +K+QS TS +SI+Q A VAAL G + V +M +AF
Sbjct: 243 TGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAAL----NGPQDEVEEMRQAFE 298
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
ERRD +V E+ G++ +P+GAFY+F + S G I +S LL++A
Sbjct: 299 ERRDLMVDGLNEIPGLECPKPEGAFYVFPNVSKLLG------KSITDSLEFAEALLEEAG 352
Query: 426 V 426
V
Sbjct: 353 V 353
|
Length = 393 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 385 bits (990), Expect = e-132
Identities = 152/365 (41%), Positives = 219/365 (60%), Gaps = 19/365 (5%)
Query: 70 PRVNAVKPSKTVAITDQATALAQAG--VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
R+ V PS T A+ +A A A+ VI L+ GEPDF TP I EA I A+ EG T
Sbjct: 1 SRLLKVLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTH 60
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YTP+AG ELR AI K K GL P++ I+V+ GAK+++ A LA+ +PGDEV+IP
Sbjct: 61 YTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPD 120
Query: 187 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + SY ++A PV +P EN F D + LE+ +T K++ +IL SP+NPTG+VY
Sbjct: 121 PGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVY 180
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L I + +H ++++SDEIYE ++Y A H S L G +RT+T+N FSK +
Sbjct: 181 SKEELKAIVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYG 239
Query: 306 MTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
MTGWR+G++ GP + +AA K++S TS A + +Q A +AAL G EVV +M + +
Sbjct: 240 MTGWRIGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALN-GPQSDEVVEEMREEY 298
Query: 365 RERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
RERRD LV++ E+ G+ + P+GAFYLF ++ +SE + LL++
Sbjct: 299 RERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIP-----------ELLDSEEFAKKLLEE 347
Query: 424 AQVLL 428
A V +
Sbjct: 348 AGVAV 352
|
Length = 393 |
| >gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 359 bits (922), Expect = e-121
Identities = 157/358 (43%), Positives = 217/358 (60%), Gaps = 6/358 (1%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP 130
RV+ +KPS + A +A L AG S++ L GEPDFDTP I +A + AI G T+YT
Sbjct: 9 RVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTL 68
Query: 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 190
GT LR AI KL+ NGL Y ++I V GAKQ+I A++A GDEVIIPAP+WV
Sbjct: 69 VNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWV 128
Query: 191 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250
SYP+M D TPVI+ + F L P+ LE+ +T ++R LIL +PSNPTG+VY + L
Sbjct: 129 SYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGAVYSRAEL 188
Query: 251 DEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTG 308
+A ++ +HP +LVL+D+IY+HI + P H A+ P + +R L NG SK +AMTG
Sbjct: 189 RALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHL-LAAAPELRDRVLVTNGVSKTYAMTG 247
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368
WR+GY AGP +AA NK+QSQ +S SSISQ A AAL V++ V +++RR
Sbjct: 248 WRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALN---GDQSFVTESVAVYKQRR 304
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
D+ + + G+ P GAFYL+++ + G +E + + YLLD A V
Sbjct: 305 DYALALLNAIPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGV 362
|
Length = 402 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 1e-98
Identities = 114/333 (34%), Positives = 181/333 (54%), Gaps = 19/333 (5%)
Query: 98 IRLAAGEPDFDTPVLIAEAGI-NAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
I L+ GEPDF P + EA A+R G Y P+ G ELR AI L G+ P+
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE 60
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
+I+V+NGA++++ + A+ +PGDEV++P P + Y AR+A A V +P FLL
Sbjct: 61 EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL 120
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
D ++LE+ T K++LL L +P+NPTG+V + L+E+A + KH +L++SDE Y ++Y
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKH-GILIISDEAYAELVY 179
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGA 335
+L +ER + + FSK F + G R+GY+ P + K+ TSG
Sbjct: 180 DGEPP-PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGP 238
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
S++SQ A AAL G E + ++ + +R RRD L+++ EL + + +P G F+L++D
Sbjct: 239 STLSQAAAAAALD---DGEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLD 295
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+ E LL +A V++
Sbjct: 296 LPEG------------DDEEFLERLLLEAGVVV 316
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated | Back alignment and domain information |
|---|
Score = 293 bits (751), Expect = 3e-96
Identities = 143/323 (44%), Positives = 202/323 (62%), Gaps = 11/323 (3%)
Query: 72 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN 131
V +++PS D A + VI L GEPDF TP + EA I ++ +G+T YT N
Sbjct: 1 VESLQPSGIRKFFDLAANME----GVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTAN 56
Query: 132 AGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 190
AG LELR I LK+ +SY P+ +I+V+ GA Q++ A+ A+ +PGDEV+I P +V
Sbjct: 57 AGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFV 116
Query: 191 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250
SY + +A PV + T + F + P +E+ +T K++ ++LCSP+NPTG+V K+ L
Sbjct: 117 SYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSEL 176
Query: 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310
+EIA IV KH L+VLSDEIY + Y A +TSFAS+ GM ERT+ ++GFSK FAMTGWR
Sbjct: 177 EEIAVIVEKH-DLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWR 234
Query: 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370
LG+IA P +F A KI A +++Q A + AL AG + V +M ++R+RR+F
Sbjct: 235 LGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEAL---RAGNDDVIRMRDSYRKRRNF 291
Query: 371 LVKSFGELEGVKMSEPQGAFYLF 393
V SF E+ G+ P GAFY F
Sbjct: 292 FVTSFNEI-GLTCHVPGGAFYAF 313
|
Length = 378 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 263 bits (673), Expect = 2e-84
Identities = 126/327 (38%), Positives = 190/327 (58%), Gaps = 12/327 (3%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
++PRV ++ S ++ + Q ++I L G+PDF TP + EA AI E +T
Sbjct: 5 INPRVKDIQISGIRQFSN----MVQNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTS 60
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YT NAG LELR A C+ +K++ L Y+P+ +I+V+ GA ++I A + PG EVI+PA
Sbjct: 61 YTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPA 120
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P + Y + R+ A PV + TR S F L + LE+ +TEK+R ++L PSNPTG
Sbjct: 121 PIYPGYEPIIRLCGAKPVFIDTR-STGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLS 179
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
K L +IA ++ K + VLSDEIY ++Y HTS A P M E+T+ +NG SK+ +M
Sbjct: 180 KEELQDIADVL-KDKNIFVLSDEIYSELVYE-QPHTSIAHFPEMREKTIVINGLSKSHSM 237
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+G++ P + K+ + ASSISQ A + AL G ++ M +++
Sbjct: 238 TGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGKDDAKM---MRHQYKK 294
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLF 393
RRD++ + G+ + +P GAFYLF
Sbjct: 295 RRDYVYNRLISM-GLDVEKPTGAFYLF 320
|
Length = 387 |
| >gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 243 bits (621), Expect = 1e-76
Identities = 131/364 (35%), Positives = 201/364 (55%), Gaps = 24/364 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
++ R+N ++ SK + ++A+ + +VI L GEPDFDTP I EA A+ EG+T
Sbjct: 10 IAGRINLIQRSKIRELFERASKME----NVISLGIGEPDFDTPKNIKEAAKRALDEGWTH 65
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YTPNAG ELR AI K+ G+ D ++V+ GA ++ A ++ GDEVIIP P
Sbjct: 66 YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDP 125
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+V Y E A+IA+A P+ +P R F DP L +T+++R++++ P+NPTG+ K
Sbjct: 126 AFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNNPTGATLDK 185
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH---TSFASLPGMWERTLTVNGFSKAF 304
+ IA I A+ + +LSDE YEH +Y A H +A + T+ N FSK F
Sbjct: 186 EVAKAIADI-AEDYNIYILSDEPYEHFLYEGAKHYPMIKYAP-----DNTILANSFSKTF 239
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
AMTGWRLG++ P+ + K+ + +S Q AG+ AL + V +M K +
Sbjct: 240 AMTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEAL-RSKESWKAVEEMRKEY 298
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
ERR ++K E+ +K+ EP+GAFY+F + +SE +LL+KA
Sbjct: 299 NERRKLVLKRLKEMPHIKVFEPKGAFYVFANID----------ETGMSSEDFAEWLLEKA 348
Query: 425 QVLL 428
+V++
Sbjct: 349 RVVV 352
|
Length = 391 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 3e-75
Identities = 111/336 (33%), Positives = 177/336 (52%), Gaps = 21/336 (6%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP- 155
+++L GEPDF TP + EA AI + YT AG LELR A +KE+ L Y P
Sbjct: 32 ILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPE 91
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
++ILV+ GA +++ ++ A+ PGD+V++PAP + Y + + A V + T +F+
Sbjct: 92 NEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTT-ENDFV 150
Query: 216 LDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
L P++LE + E K + +IL P+NPTG Y + + +A ++ K+ + V+SDE+Y
Sbjct: 151 LTPEMLEKAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYD-IFVISDEVYS 209
Query: 273 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332
+ Y H S A + ++T+ +NG SK+ AMTGWR+G I P F A K
Sbjct: 210 ELTYTGEPHVSIAEY--LPDQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSHQYLV 267
Query: 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392
+ A++++Q A V AL G M K + +RRD++++ +L G K+ +P GAFY+
Sbjct: 268 TAATTMAQFAAVEALTNGKDDALP---MKKEYIKRRDYIIEKMTDL-GFKIIKPDGAFYI 323
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
F Y ++S + K V
Sbjct: 324 FAKIPAGYN---------QDSFKFLQDFARKKAVAF 350
|
Length = 391 |
| >gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (605), Expect = 3e-74
Identities = 110/339 (32%), Positives = 177/339 (52%), Gaps = 15/339 (4%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 148
LA+ +I L+ G+PD T I A ++G TRYT + G +EL I +
Sbjct: 23 TLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKN 82
Query: 149 NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 208
LS+ ++I+ + GA + A+ ++ PGDEVII P++ Y + + P+IL T
Sbjct: 83 YDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILET 142
Query: 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ F ++ K LE+ +T K++ +IL SP+NPTG+V+ K L+EIA+I ++ L ++SD
Sbjct: 143 YEEDGFQINVKKLEALITSKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISD 201
Query: 269 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328
E+Y+ + A+L GM ERT+T FSK FAMTGWR+GY+ P + + I
Sbjct: 202 EVYDGFSFY-EDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIETAKIIN 260
Query: 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388
A +ISQ+A + AL +V + + F++R ++ K + + + P+G
Sbjct: 261 EGICFSAPTISQRAAIYALKH---RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPKG 317
Query: 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427
+ Y FI+ G +S C LL +A VL
Sbjct: 318 SIYAFINIK------KTGL----SSVEFCEKLLKEAHVL 346
|
Length = 384 |
| >gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 219 bits (560), Expect = 2e-67
Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 8/310 (2%)
Query: 88 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147
+ALA + L G PD D P + EA AI G +Y P G ELR+AI + +
Sbjct: 18 SALA-VRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRR 76
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
GL Y PD ++LV+ GA ++I AVL + PGDEV++ P++ SY + +A A V +
Sbjct: 77 RYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPV 136
Query: 207 PTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
P F LD L + +T ++R LI+ SP NPTG+V L IA + +H LLV
Sbjct: 137 PLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPTGTVLTAAELAAIAELAVEHD-LLV 195
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325
++DE+YEH+++ A H A+LPGM ERT+T++ +K F +TGW++G+ GP +AA
Sbjct: 196 ITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIAAVR 255
Query: 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
+ T + Q A AL A V+ + + + +RD L E G ++ +
Sbjct: 256 AAKQYLTYVGGAPFQPAVAHALDHEDA---WVAALRDSLQAKRDRLAAGLAEA-GFEVHD 311
Query: 386 PQGAFYLFID 395
G ++L D
Sbjct: 312 SAGTYFLCAD 321
|
Length = 387 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 2e-67
Identities = 111/360 (30%), Positives = 187/360 (51%), Gaps = 29/360 (8%)
Query: 68 LSPRVNAVKPS---KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
+S RV + S K V D+A + G+ V L G+PD TP + EA I E
Sbjct: 3 ISKRVLNMPASPIRKLVPYADEA---KKRGIKVYHLNIGQPDIKTPEVFFEA-IKNYDEE 58
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
Y+ + G ELR A K ++ G+ PD+IL++NG ++IL A++A+C PGDE+++
Sbjct: 59 VLAYSHSQGIPELREAFA-KYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILV 117
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPK-VLESKLTEKSRLLILCSPSNPTGS 243
P PF+ +Y A A V + T+I E F L K +E +T K++ +++ +P NPTG
Sbjct: 118 PEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPGNPTGV 177
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
VY K L+ +A I KH L ++SDE+Y +Y +TS SL G+ +R + ++ SK
Sbjct: 178 VYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR 236
Query: 304 FAMTGWRLGYIAGP-KHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
++ G R+G + K +AA K+ Q++ + ++ Q A L ++
Sbjct: 237 YSACGARIGCLISKNKELIAAAMKLCQARLS--PPTLEQIGAAALLDT---PESYFDEVR 291
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
+ +++RRD L + ++ GV +P+GAFY+ ++++E ++LL
Sbjct: 292 EEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLP------------VDDAEDFAKWLL 339
|
Length = 397 |
| >gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 4e-67
Identities = 115/362 (31%), Positives = 177/362 (48%), Gaps = 23/362 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
P A+ S + A A G V+ L GE D TP I +A A+ +G T
Sbjct: 1 ARPAARALPESGIREV-----ANAGRGREGVLPLWFGESDLPTPDFIRDAAAAALADGET 55
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YT N G ELR A+ + +G++ P++I V++ Q+++ A A+ PGDEV+
Sbjct: 56 FYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVT 115
Query: 187 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P W + +I A V +P + LD L + +T ++R L + SP+NPTG
Sbjct: 116 PLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTGWTA 175
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAF 304
++ L I +H L +++DE+YE + YAP SF + +R + VN FSK +
Sbjct: 176 SRDDLRAILAHCRRH-GLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW 234
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
AMTGWRLG++ P K+ TS + Q+A VAAL G + V+++V
Sbjct: 235 AMTGWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALD---EGEDFVAELVARL 291
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
R RD LV + L GV++++P GA Y F G +S +L + L+D+A
Sbjct: 292 RRSRDHLVDALRALPGVEVAKPDGAMYAFF--------RIPGV---TDSLALAKRLVDEA 340
Query: 425 QV 426
+
Sbjct: 341 GL 342
|
Length = 382 |
| >gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 4e-66
Identities = 107/360 (29%), Positives = 167/360 (46%), Gaps = 19/360 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
S R ++P +A+ +A L AG VI L GEPDF T I AG A+ G TR
Sbjct: 5 YSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTR 64
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G LR AI + G+ P++ILV+ G ++L A + PG ++ P
Sbjct: 65 YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADP 124
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ R+ + ++P + L P ++E + ++ SP+NPTG++ +
Sbjct: 125 GYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASPANPTGTLLSR 184
Query: 248 NLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+ L +++ + A+ L+V DEIY + Y AS+ + + +N FSK F M
Sbjct: 185 DELAALSQALRARGGHLVV--DEIYHGLTYG----VDAASVLEVDDDAFVLNSFSKYFGM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWRLG++ P V K+ AS+ +Q A +A ++ F
Sbjct: 239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEP--ETLAILEARRAEFAR 296
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRDFL+ + EL EPQGAFYL+ D S + G ++ + CR+ L+ V
Sbjct: 297 RRDFLLPALRELGFGIAVEPQGAFYLYADISAFGG----------DAFAFCRHFLETEHV 346
|
Length = 387 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 214 bits (547), Expect = 6e-66
Identities = 96/343 (27%), Positives = 150/343 (43%), Gaps = 30/343 (8%)
Query: 97 VIRLAAGEPDFDTPVLI----AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 152
I L + E D+ L AE A Y P G ELR A+ L L
Sbjct: 3 KINLGSNEYLGDSGTLPAVAKAEKDALAGG-TRNLYGPTDGLPELREALAKFLGRSPVLK 61
Query: 153 YTP-DQILVSNGAKQSILQAV-LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210
++ +GA +I + L +PGD +++PAP + SY + R+A V P
Sbjct: 62 LDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYS 121
Query: 211 SENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267
S +F LD LE+ L TE +++++ SP NPTG+V L+++ + +H +L+L
Sbjct: 122 SNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEH-NILLLV 180
Query: 268 DEIYEHIIYAPATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325
DE Y ++ + +L G L V FSKAF + GWR+GYI G ++
Sbjct: 181 DEAYAGFVFGSLDAVATRALLAEGPN--LLVVGSFSKAFGLAGWRVGYILGNAAVISQLR 238
Query: 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
K+ F S S+ Q A AAL + +M + +ERRD+L G+ +
Sbjct: 239 KLARPFYS--STHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA-GLSVLP 295
Query: 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
Q F+L E + +L + LL++ V +
Sbjct: 296 SQAGFFLLTGLDP------------EAALALAQVLLEEVGVYV 326
|
Length = 357 |
| >gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 1e-63
Identities = 99/309 (32%), Positives = 159/309 (51%), Gaps = 19/309 (6%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFT-----RYTPNAGTLELRSAICHKLKEENGLS 152
I L G + P I A+ +Y G L AI KL+++NG+
Sbjct: 30 ISLGQGVVSYPPPP----EAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIE 85
Query: 153 YTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIADATPVILPTRI 210
+Q I+V+ G+ + + A+LA+ PGDE+I+ P++ ++ EMA +A P+++PT
Sbjct: 86 LNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNH-EMAITMAGCQPILVPT-- 142
Query: 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270
+N+ L P+ +E +T K+R ++ SP+NPTG VYP+ LL + +I A+H + +SDE
Sbjct: 143 DDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEH-GIYHISDEA 201
Query: 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330
YE+ Y H S S+PG T+++ SKA+ WR+GY+ P H + A KIQ
Sbjct: 202 YEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQDT 261
Query: 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-KMSEPQGA 389
+SQ A + AL G + + + R L+KS G+L+ + GA
Sbjct: 262 ILICPPVVSQYAALGAL---QVGKSYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGA 318
Query: 390 FYLFIDFST 398
FY F+ +T
Sbjct: 319 FYCFLKVNT 327
|
Length = 389 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 1e-62
Identities = 111/332 (33%), Positives = 170/332 (51%), Gaps = 16/332 (4%)
Query: 75 VKPSKTV-----AITD---QATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIRE 123
++ S+ AI D A L + G+ VIRL G+P DF P + EA AI+E
Sbjct: 2 IRASERAMGVEYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKE 61
Query: 124 GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183
G Y P+ G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE++
Sbjct: 62 GHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEIL 121
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243
IP P + Y + + PV T E + D + K+TEK++ + + +P+NPTG+
Sbjct: 122 IPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGA 181
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
+Y K L EI I +H L V+SDEIY+ + Y H S SL + +NG SK
Sbjct: 182 LYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYE-GKHVSPGSLTKD-VPVIVMNGLSKV 238
Query: 304 FAMTGWRLGYIA--GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
+ TGWRLGYI P+ +A + + + A AA+ + + + +
Sbjct: 239 YFATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYM 298
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
K +ERRD++ K E+ G+ ++PQGAFY+F
Sbjct: 299 KKLKERRDYIYKRLNEIPGISTTKPQGAFYIF 330
|
Length = 398 |
| >gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 3e-57
Identities = 125/373 (33%), Positives = 191/373 (51%), Gaps = 37/373 (9%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV+A++P + + +A AL +AG +I + GEPDF P + EA A+R G T+
Sbjct: 3 LAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQ 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G LR AI GL P++I+V+ GA ++L A LA+ GDEV++P P
Sbjct: 63 YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122
Query: 188 FWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG-S 243
SYP A+ PV++P+ +E F L +E+ E++R ++L SPSNPTG S
Sbjct: 123 ---SYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTS 179
Query: 244 VYPKNLLDEIARIVA--KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
+ P DE+ RIV + + DEIY+ + Y A ++ + + + +T+N FS
Sbjct: 180 IAP----DELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALS----LGDDVITINSFS 231
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVA-----ALGLGYAGGEV 356
K F MTGWRLG++ P+ V K+ AS+++Q A +A L +
Sbjct: 232 KYFNMTGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTL-------AI 284
Query: 357 VSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415
+ F+ RRDF+V + L G K+ P GAFY++ D A S +
Sbjct: 285 YERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAHPAAGD------SAA 337
Query: 416 LCRYLLDKAQVLL 428
L + +L A V+L
Sbjct: 338 LTQAMLHDAGVVL 350
|
Length = 388 |
| >gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 2e-54
Identities = 106/330 (32%), Positives = 179/330 (54%), Gaps = 17/330 (5%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD- 156
I L G P+FD P + EA I AIR+G +Y G EL SAI + K++ GL P+
Sbjct: 57 INLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEK 116
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
++ V++G ++I +L + +PGDEVI+ APF+ SY +A A + R +F +
Sbjct: 117 EVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLR-PPDFAV 175
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
L++ T K+R +++ +P NPTG ++ + L+ IA + ++ +L +DE+Y+ + +
Sbjct: 176 PEDELKAAFTSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAF 234
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
H S ASLPGM+ERT+T+N K F++TGW++G+ P H + S T +
Sbjct: 235 E-GDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAHSFLTFATA 293
Query: 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396
+ Q A VAAL A ++ + + ++D LV+ E+ G K+ G +++ +D
Sbjct: 294 TPMQWAAVAAL---RAPESYYEELKRDYSAKKDILVEGLKEV-GFKVYPSSGTYFVMVDH 349
Query: 397 STYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+ + GF EN + C YL+++ V
Sbjct: 350 TPF------GF---ENDIAFCEYLIEEVGV 370
|
Length = 413 |
| >gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 180 bits (460), Expect = 1e-52
Identities = 96/312 (30%), Positives = 146/312 (46%), Gaps = 40/312 (12%)
Query: 103 GEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159
G P P + EA E G Y PNAG E+R AI L G T D I+
Sbjct: 41 GNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIV 100
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219
++ GA ++ A+ A+ +PGDEVI+ AP++V Y V++PT ++ F D
Sbjct: 101 MTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTD-TDTFQPDLD 159
Query: 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEH 273
LE+ +T K++ +I+ SP+NPTG VY + L +A ++ + P + ++SDE Y
Sbjct: 160 ALEAAITPKTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRP-IYLISDEPYRE 218
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA------GPKHFVAACNKI 327
I+Y A + ++ ++ V FSK+ ++ G R+GYIA VAA
Sbjct: 219 IVYDGAE---VPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEMEDADDLVAALV-- 273
Query: 328 QSQFTSG------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
F + A ++ Q+ L V V ++ RD L EL G
Sbjct: 274 ---FANRILGFVNAPALMQRVVAKCL------DATVD--VSIYKRNRDLLYDGLTEL-GF 321
Query: 382 KMSEPQGAFYLF 393
+ +PQGAFYLF
Sbjct: 322 ECVKPQGAFYLF 333
|
Length = 394 |
| >gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 1e-50
Identities = 101/363 (27%), Positives = 167/363 (46%), Gaps = 20/363 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
L+ R+ + P I D+ A +A GV VI L G+PD TP I EA A
Sbjct: 2 LADRIENLPPYLFAEI-DKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPEN 60
Query: 127 -RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
RY G L R A+ K G+ P+ ++L G+K+ I LA +PGD V++
Sbjct: 61 HRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLV 120
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
P P + Y A P +P + FL D + + +K++L+ + P+NPTG+V
Sbjct: 121 PDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAV 180
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
P E+ ++ ++V D Y I + SF + G + + + SK +
Sbjct: 181 APLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY 239
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
MTGWR+G G +A K+++ SG Q A +AAL +VV ++ K +
Sbjct: 240 NMTGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG---PQDVVKEIRKIY 296
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
+ RRD L+++ ++ G+ + +P+ FY+++ EG+ S LL++
Sbjct: 297 QRRRDLLLEALKKI-GIDVEKPKATFYVWV-------PVPEGY----TSAEFAARLLEET 344
Query: 425 QVL 427
V+
Sbjct: 345 GVV 347
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia and the clade containing the Chlamydia gene is a neighboring one in the same pfam00155 superfamily so it seems quite reasonable that these enzymes catalyze the same transformation. Length = 383 |
| >gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 8e-49
Identities = 82/242 (33%), Positives = 128/242 (52%), Gaps = 4/242 (1%)
Query: 77 PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE 136
P+ I +ALA I L+ G PDFD P + EA A+ G +Y P G
Sbjct: 13 PNVGTTIFTVMSALAAE-HGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAA 71
Query: 137 LRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
LR AI K G Y D +I V+ GA +++ A+LA+ PGDEVI+ P + SY
Sbjct: 72 LREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPA 131
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255
+A V + + +F +D + + ++ ++RL+IL +P NP+G+V+ + + +
Sbjct: 132 IELAGGRAVRVALQ-PPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQ 190
Query: 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
++A + VLSDE+YEHI++ A H S P + ER V+ F K + +TGW++GY
Sbjct: 191 LIAGT-DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCV 249
Query: 316 GP 317
P
Sbjct: 250 AP 251
|
Length = 386 |
| >gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 1e-47
Identities = 109/363 (30%), Positives = 172/363 (47%), Gaps = 20/363 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATA-LAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
L+ R+ + P I D+ A GV VI L G+PD TP I EA A+ +
Sbjct: 4 LADRIKNLPPYLFAEI-DKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPEN 62
Query: 127 -RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
+Y G LE R A+ K G+ P+ +++ G+K+ I LA +PGD V++
Sbjct: 63 HQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLV 122
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
P P + Y A P +P + FL D + + +K++L+ + P+NPTG+V
Sbjct: 123 PDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAV 182
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
+E+ K+ ++V D Y I Y SF +PG + + + SK +
Sbjct: 183 ADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY 241
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
MTGWR+G+ G +A K++S SG Q+AG+AAL EVV ++ K +
Sbjct: 242 NMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG---PQEVVEELRKIY 298
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
+ERRD LV+ +L G+++ P+ FY++ +G+ S LLDKA
Sbjct: 299 QERRDILVEGLRKL-GLEVEPPKATFYVWAPVP-------KGY----TSAEFATLLLDKA 346
Query: 425 QVL 427
V+
Sbjct: 347 GVV 349
|
Length = 385 |
| >gnl|CDD|181580 PRK08912, PRK08912, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 8e-47
Identities = 95/358 (26%), Positives = 168/358 (46%), Gaps = 16/358 (4%)
Query: 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT 129
N V I + + LA+ I L G PD P + A +A+ +G +Y
Sbjct: 2 KMGNPVFADLPTTIFEVMSQLAREH-GAINLGQGFPDDPGPEDVRRAAADALLDGSNQYP 60
Query: 130 PNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188
P G ELR A+ GL P+ +++V++GA +++ A+LA+ PGDEV++ P
Sbjct: 61 PMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPL 120
Query: 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248
+ +Y + R A P ++ ++ L L + + +++ ++L +P NP G V+P+
Sbjct: 121 YDAYLPLIRRAGGVPRLVRLE-PPHWRLPRAALAAAFSPRTKAVLLNNPLNPAGKVFPRE 179
Query: 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308
L +A +H + + DE++EH+++ H +LPGM ERT+ + K F++TG
Sbjct: 180 ELALLAEFCQRH-DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTG 238
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368
W++G++ + K QF + + + +A V A GLG M R
Sbjct: 239 WKVGFVCAAPPLLRVLAKAH-QFLTFTTPPNLQAAV-AYGLGKPDD-YFEGMRADLARSR 295
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
D L + G + QG ++L +D + G E+ + CR L+++A V
Sbjct: 296 DRLAAGLRRI-GFPVLPSQGTYFLTVDLA--------PLGLAEDDVAFCRRLVEEAGV 344
|
Length = 387 |
| >gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 7e-42
Identities = 107/371 (28%), Positives = 175/371 (47%), Gaps = 53/371 (14%)
Query: 83 ITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIR--EGFTRYTPNAGTLEL 137
+ +A L + G +++L G P F+ P I I + +G Y+ + G
Sbjct: 21 VLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQG---YSDSKGLFSA 77
Query: 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---E 194
R AI +++ D I + NG + I+ A+ A+ + GDEV++PAP YP
Sbjct: 78 RKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAP---DYPLWTA 134
Query: 195 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254
++ PV + D + SK+T +++ +++ +P+NPTG+VY K LL+EI
Sbjct: 135 AVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIV 194
Query: 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY 313
I +H L++ +DEIY+ I+Y A H S ASL P + +T NG SKA+ + G+R+G+
Sbjct: 195 EIARQH-NLIIFADEIYDKILYDGAVHISIASLAPDLL--CVTFNGLSKAYRVAGFRVGW 251
Query: 314 --IAGPKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA--------GGEVVSK 359
++GPK ++ + + + A+ +Q A ALG GY GG
Sbjct: 252 MVLSGPKKHAKGYIEGLD-MLASMRLCANVPAQHAIQTALG-GYQSINELILPGGR---- 305
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLC 417
E+RD + + GV +P+GA Y F +D Y I + E
Sbjct: 306 ----LYEQRDRAWELLNAIPGVSCVKPKGALYAFPKLDPKVY---------PIHDDEQFV 352
Query: 418 RYLLDKAQVLL 428
LL + +VLL
Sbjct: 353 LDLLLQEKVLL 363
|
Length = 404 |
| >gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 8e-41
Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 25/309 (8%)
Query: 91 AQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149
Q G+ +I+L++ E + P + EA A+ + RY P+ ELR+A+
Sbjct: 17 RQYGLPGIIKLSSNENPYGPPPKVIEAIRAALDK-LNRY-PDPDYRELRAALAEYYGVV- 73
Query: 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 209
P+ +LV NG+ + I V A PGD V+IP P + Y A++A A V +P +
Sbjct: 74 ----DPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLK 129
Query: 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
F LD + + + +K++L+ LC+P+NPTG++ P+ L + + + L+V+ DE
Sbjct: 130 ---EFRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPEG-GLVVI-DE 184
Query: 270 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329
Y I ++P + P T FSKAF + G R+GY +AA NK++
Sbjct: 185 AY--IEFSPESSLELLKYPPNLIVLRT---FSKAFGLAGLRVGYAIANPELIAALNKVRP 239
Query: 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389
F SS + A +AAL + + + V+ RE R+ L + L G+ P A
Sbjct: 240 PFN--VSSPALAAAIAALRD----ADYLEESVERIREERERLYAALKAL-GLFGVFPSQA 292
Query: 390 FYLFIDFST 398
++ +
Sbjct: 293 NFVLVRVPD 301
|
Length = 356 |
| >gnl|CDD|183514 PRK12414, PRK12414, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 6e-40
Identities = 92/307 (29%), Positives = 158/307 (51%), Gaps = 20/307 (6%)
Query: 98 IRLAAGEPDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
+ L+ G P+F P L+ A+R+G +Y P AG LR A+ K + G Y P
Sbjct: 32 LNLSQGAPNFAPDPALVEGVA-RAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPA 90
Query: 157 -QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
++ V A + + A+ A+ PGDEVI P + SY + R+ ATPV + E+F
Sbjct: 91 SEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFR 149
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 275
++ + + +T ++R++I+ +P NP+ +V+ L +A++ ++ +++LSDE+YEH++
Sbjct: 150 VNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLT-RNTDIVILSDEVYEHVV 208
Query: 276 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335
+ A H S A + ER++ V+ F K++ +TGWR+GY P + K+ A
Sbjct: 209 FDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMVFSA 268
Query: 336 SSISQKAGVAALG--LGYAGGEVVSKMVKAFRER-RDFLVKSFGELEG--VKMSEPQGAF 390
+ Q A AL Y G + AF +R RD L + EL G ++ +G+F
Sbjct: 269 DTPMQHAFAEALAEPASYLG-------LGAFYQRKRDLLAR---ELAGSRFELLPSEGSF 318
Query: 391 YLFIDFS 397
++ F
Sbjct: 319 FMLARFR 325
|
Length = 384 |
| >gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 95/334 (28%), Positives = 146/334 (43%), Gaps = 16/334 (4%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPV----LIAEAGINAIR 122
L+P + A+ P + A +I L+ P + P +AEA A
Sbjct: 1 PLNPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGYPPPPELLRALAEA---AAD 57
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
Y P G ELR A G + +P+Q+ +++G Q+ A++ + GDEV
Sbjct: 58 PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEV 117
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242
I+P P++ ++ + PV LP L DP E+ +T ++R + L +P+NPTG
Sbjct: 118 ILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTG 177
Query: 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLT-VNGF 300
VYP LL E+ + +H L+L DE Y A H FA P W+ TL + F
Sbjct: 178 VVYPPELLHELYDLARRHGIALIL-DETYRDFDSGGGAPHDLFAD-PD-WDDTLVHLYSF 234
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360
SK++A+TG R+G + +A K A I Q A A GL
Sbjct: 235 SKSYALTGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIA--VAWGLPNLADWRAGNR 292
Query: 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
+ R RRD F L G ++ GA++ ++
Sbjct: 293 AEIAR-RRDAFRAVFARLPGWEL-LASGAYFAYV 324
|
Length = 386 |
| >gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-36
Identities = 84/309 (27%), Positives = 141/309 (45%), Gaps = 23/309 (7%)
Query: 88 TALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147
A G VI+L + E F P EA + A + RY P+ EL+ A+
Sbjct: 12 PARELGGKEVIKLNSNENPFGPPPKAKEA-LRAEADKLHRY-PDPDPAELKQALADYY-- 67
Query: 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 207
P+QIL+ NG+ + I + A PGD V++P P + Y A+I A V +P
Sbjct: 68 ----GVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVP 123
Query: 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267
E+ LD + + + +K +L+ LCSP+NPTG++ ++ ++ + + LV+
Sbjct: 124 LD--EDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPE--DALVVV 179
Query: 268 DEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327
DE Y ++ S L + + + SKAF + G R+GY + A NK+
Sbjct: 180 DEAY--GEFSG--EPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKV 235
Query: 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387
++ F S ++Q A +AAL + + K V+ R+ L +L G+++
Sbjct: 236 RAPF--NLSRLAQAAAIAAL----RDDDFIEKTVEEINAERERLYDGLKKLPGLEVYPSD 289
Query: 388 GAFYLFIDF 396
F + I F
Sbjct: 290 ANF-VLIRF 297
|
Alternate names: histidinol-phosphate transaminase; imidazole acetol-phosphate transaminase Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme [Amino acid biosynthesis, Histidine family]. Length = 346 |
| >gnl|CDD|180317 PRK05942, PRK05942, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 92/330 (27%), Positives = 158/330 (47%), Gaps = 15/330 (4%)
Query: 71 RVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRY 128
R+ A+ P A D+ A A + G+ +I L G PD P + EA I A+ + Y
Sbjct: 11 RLQAL-PPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGY 69
Query: 129 TPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
P GT R AI G+ PD + L G+K+ + LA +PGD V++P+P
Sbjct: 70 PPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSP 129
Query: 188 FWVSYPEMAR---IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
+YP R IA A + + ++L+D + ++ +++++L PSNPT +
Sbjct: 130 ---AYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYPSNPTTAT 186
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
P+ +EI A+ ++++ D Y + + TS +PG + + + SK +
Sbjct: 187 APREFFEEIVAF-ARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY 245
Query: 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364
M GWR+G++ G +H + +++ G S QKA AL L + ++ + +
Sbjct: 246 NMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQQVQERY 302
Query: 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
R RRDFL++ GEL G + + YL++
Sbjct: 303 RTRRDFLIQGLGEL-GWNIPPTKATMYLWV 331
|
Length = 394 |
| >gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-35
Identities = 89/370 (24%), Positives = 153/370 (41%), Gaps = 29/370 (7%)
Query: 75 VKPS----KTV----AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-- 124
VKPS TV AI D VI+L+ G+P + + A+++
Sbjct: 3 VKPSDHSNNTVNPIRAIVDNMKVKPNPEKPVIKLSIGDPTVFGNLPTDPEVMQAMKDSLD 62
Query: 125 ---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE 181
+ Y P G L R AI +G D +++ +G +I + A+ + G
Sbjct: 63 SGKYNGYAPTVGALSAREAIASYYHNPDG-PIEADDVVLCSGCSHAIEMCIAALANAGQN 121
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
+++P P + Y +A + +++ +D K LES + EK+ L++ +PSNP
Sbjct: 122 ILVPRPGFPLYRTLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPC 181
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
GSV+ + L+EI + + L +++DEIY ++++ AT ASL L+ G +
Sbjct: 182 GSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSGATFEPVASLSSNVPI-LSCGGLA 239
Query: 302 KAFAMTGWRLGYIAGPKHFVAACN-----KIQSQFTSGASSISQKAGVAALGLGYAGGEV 356
K + + GWRLG+I + SQ G +I Q A + L E
Sbjct: 240 KRWLVPGWRLGWIIIHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSI--LLRTPQEY 297
Query: 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL 416
+ + + G++ P GA Y+ + G E E F + +N
Sbjct: 298 FDGTLSVLESNAMLCYGALAAVPGLQPVMPSGAMYMMV------GIEMEHFPEFKNDVEF 351
Query: 417 CRYLLDKAQV 426
L+ + V
Sbjct: 352 TERLIAEQSV 361
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs [Energy metabolism, Amino acids and amines]. Length = 401 |
| >gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 7e-35
Identities = 94/341 (27%), Positives = 155/341 (45%), Gaps = 20/341 (5%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 147
G VI L G PD TP I EA A +Y+P G L+ A K
Sbjct: 26 KKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKR 85
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
E G++ P+ ++ + G K +++ + +PGD +++P P + Y +A A +
Sbjct: 86 EYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETM 145
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
P NFL D + ++ EK++L+ L P+NPTG+V K +E KH + V+
Sbjct: 146 PLIAENNFLPDYTKIPEEVAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVV 204
Query: 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326
D Y I + SF PG + + + SK F M GWR+ + G + + A N
Sbjct: 205 HDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIEAINL 264
Query: 327 IQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
+Q F S +I Q A + AL + V+++V + RR+ + + E+ G ++
Sbjct: 265 LQDHLFVSLFGAI-QDAAIEAL---LSDQSCVAELVARYESRRNAFISACREI-GWEVDA 319
Query: 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
P+G+F+ ++ +G+ SE LL+KA V
Sbjct: 320 PKGSFFAWMPV-------PKGY----TSEQFADLLLEKAHV 349
|
Length = 389 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 1e-34
Identities = 85/318 (26%), Positives = 142/318 (44%), Gaps = 31/318 (9%)
Query: 96 SVIRLAAGEPDFDTPVL--IAEAGINAIR----EGFTRYTPNAGTLELRSAICHKLKEEN 149
SVI A G PD L + A +R +Y P AG ELR AI L
Sbjct: 90 SVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARR 149
Query: 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM---ARIADATPVIL 206
G+S P+QI++++GA+Q++ + + PGD V++ P +YP A + +
Sbjct: 150 GISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVEDP---TYPGALQALEALGARVIPV 206
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYP----KNLLDEIARIVAKH 260
P + +DP+ LE L + + +P+ NPTG K LL +A+
Sbjct: 207 PV---DEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLA-----LAEK 258
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
+L++ D+ Y + Y +L R + + FSK A G RLGY+ P
Sbjct: 259 YDVLIIEDDYYGELRYDGPPPPPLKAL-DAPGRVIYLGSFSKTLA-PGLRLGYVVAPPEL 316
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-- 378
+ +++ G SS+SQ A A L G+ + ++ + + RRD L+++ E
Sbjct: 317 IEKLLRLKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLP 375
Query: 379 EGVKMSEPQGAFYLFIDF 396
E + P+G +L+++
Sbjct: 376 ELATWTRPEGGLFLWLEL 393
|
Length = 459 |
| >gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 27/313 (8%)
Query: 106 DFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI 158
DF TP A + A+++ G+T L +A+ + L + +G P+ I
Sbjct: 36 DFATP----PAVLEALKQRLEHPVFGYTLPPD-----SLYAAVINWLAQRHGWQIDPEWI 86
Query: 159 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-FLLD 217
+ G S+ AV A+ +PG+ VI+ P + + + V+ P ++ + D
Sbjct: 87 VFLPGVVPSLFAAVRALTAPGEGVIVQTPVYPPFLSAVKSNGRELVLNPLKLDPGRYRFD 146
Query: 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+ LE +TEK+RLL+LCSP NP G V+ + L +A + +H ++V+SDEI+ ++Y
Sbjct: 147 LEDLEDAITEKARLLLLCSPHNPVGRVWTREELTRLAELCLRH-NVVVVSDEIHADLVYP 205
Query: 278 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 334
P H ASL P + ERT+T+ K F + G + + I P+ A Q
Sbjct: 206 PNKHIPLASLSPEIAERTVTLLSPGKTFNIAGLNISFAIIPNPELRRAFQEAAQRVHIQH 265
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKA-FRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
+ A AA Y GE + A R RD + + + L +++ P+ +
Sbjct: 266 GNLFGYVAFEAA----YREGEPWLDALLAYLRGNRDLVEEFIAKRLPQIRVRPPEATYLA 321
Query: 393 FIDFSTYYGSEAE 405
++D +A+
Sbjct: 322 WLDCRALGLDDAD 334
|
Members of this subfamily are probable C-S lyases from a family of pyridoxal phosphate-dependent enzymes that tend to be (mis)annotated as probable aminotransferases. One member is PatB of Bacillus subtilis, a proven C-S-lyase. Another is the virulence factor cystalysin from Treponema denticola, whose hemolysin activity may stem from H2S production. Members of the seed alignment occur next to examples of the enzyme 5-histidylcysteine sulfoxide synthase, from ovothiol A biosynthesis, and would be expected to perform a C-S cleavage of 5-histidylcysteine sulfoxide to leave 1-methyl-4-mercaptohistidine (ovothiol A). Length = 384 |
| >gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family aminotransferase | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 88/347 (25%), Positives = 157/347 (45%), Gaps = 29/347 (8%)
Query: 97 VIRLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 151
VI L+ G+P + T EA +A+R G F Y P+ G L R A+ L +
Sbjct: 33 VIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPG 92
Query: 152 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR---IADATPVILPT 208
T D +++++G Q+I + A+ +PG +++P P + Y A + +LP
Sbjct: 93 KLTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLP- 151
Query: 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+++ +D LES EK+ +++ +PSNP GSV+ ++ L +IA + K + +++D
Sbjct: 152 --EKDWEIDLDGLESLADEKTVAIVVINPSNPCGSVFSRDHLQKIAEVAEKL-GIPIIAD 208
Query: 269 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-------GPKHFV 321
EIY H+++ A AS + L++ G SK + + GWRLG+I +
Sbjct: 209 EIYGHMVFGDAPFIPMASFASIVPV-LSLGGISKRWVVPGWRLGWIIIHDPHGIFRDTVL 267
Query: 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
+ Q G ++I Q A L E + + + + ++ G+
Sbjct: 268 QGLKNL-LQRILGPATIVQGALPDI--LENTPQEFFDGKISVLKSNAELCYEELKDIPGL 324
Query: 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+P+GA YL + E E F +I++ C L + V+
Sbjct: 325 VCPKPEGAMYLMV------KLELELFPEIKDDVDFCEKLAREESVIC 365
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. Length = 403 |
| >gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 7e-34
Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 36/337 (10%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF TP I EA + G Y G+ EL +AI H K+ + P+ I+ G
Sbjct: 36 DFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVV 93
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-------PVILPTRISENFLLDP 218
I A+ A+ PGD V+I P YP P++ + +D
Sbjct: 94 PGISLAIRALTKPGDGVVIQTP---VYPPFYNAIKLNGRKVIENPLVED---DGRYEIDF 147
Query: 219 KVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
LE E+ +L ILC+P NPTG V+ K L +IA + +H + V+SDEI+ ++
Sbjct: 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRH-GVRVISDEIHADLVLG 206
Query: 278 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 334
H FASL + ++T+ SK F + G + Y I+ + +++ G
Sbjct: 207 GHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHG 266
Query: 335 ASSISQKAGVAALGLGYA-GGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
S++ A AA Y G + ++++ ++ RD++ + L GVK++EPQG +
Sbjct: 267 PSALGIIATEAA----YNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLA 322
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429
++D + L +LL++A+V L
Sbjct: 323 WLDCREL----------GLDDSELAEFLLEEAKVALS 349
|
Length = 388 |
| >gnl|CDD|163313 TIGR03537, DapC, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 9e-33
Identities = 85/315 (26%), Positives = 150/315 (47%), Gaps = 14/315 (4%)
Query: 102 AGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILV 160
G+P TP I +A I+A+ E ++Y GT LR AI + G+ PD Q+L
Sbjct: 7 TGDPKEPTPPFIRKALIDAVPE-VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLP 65
Query: 161 SNGAKQSILQAVLAVCSPGDE---VIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217
S G+K++I L P ++ VI P + Y A A P + + + FLL
Sbjct: 66 SAGSKEAIFHFPLVFIDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLR 125
Query: 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+ +E + E+++++ + P NPTG+ P++ L E + +H +++ SDE Y I +
Sbjct: 126 LEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHG-IILCSDECYTEIYFG 184
Query: 278 PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASS 337
H+ +L E L + SK MTG+R G++AG + ++ K+++ F +
Sbjct: 185 EPPHS---ALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFGVASPD 241
Query: 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397
Q A AA ++ V + K F+ +RD ++ F + G++ P FYL++
Sbjct: 242 FVQAAAKAA----WSDDNHVLERRKIFKRKRDLFIEFFNK-VGLEYLYPDATFYLWVKVP 296
Query: 398 TYYGSEAEGFGKIEN 412
+ ++ +EN
Sbjct: 297 SGIDAKDYALRLLEN 311
|
The four sequences which make up the seed for this model are not closely related, although they are all members of the pfam00155 family of aminotransferases and are more closely related to each other than to anything else. Additionally, all of them are found in the vicinity of genes involved in the biosynthesis of lysine via the diaminopimelate pathway (GenProp0125), although this amount to a separation of 12 genes in the case of Sulfurihydrogenibium azorense Az-Fu1. None of these genomes contain another strong candidate for this role in the pathway. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. Length = 350 |
| >gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-32
Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 46/306 (15%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 157
I+L++ E F P+ A I G RY P+ G +ELR+A+ L P+
Sbjct: 25 IKLSSNETPFG-PLPSVRAAIARAAAGVNRY-PDMGAVELRAALAEHL------GVPPEH 76
Query: 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADATPVILPTRISENF 214
+ V G+ Q V A PGDEVI W S YP + ++A ATPV +P
Sbjct: 77 VAVGCGSVALCQQLVQATAGPGDEVIFA---WRSFEAYPILVQVAGATPVQVPLTPDHTH 133
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEH 273
LD + + +T+++RL+ +C+P+NPTG+V E+AR + P +LV+ DE Y
Sbjct: 134 DLD--AMAAAITDRTRLIFVCNPNNPTGTVVTP---AELARFLDAVPADVLVVLDEAYVE 188
Query: 274 IIYAPAT---------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324
+ H + L RT FSKA+ + G R+GY G +AA
Sbjct: 189 YVRDDDVPDGLELVRDHPNVVVL-----RT-----FSKAYGLAGLRVGYAVGHPEVIAAL 238
Query: 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384
K+ F +S++Q A +A+L A E++ + V A RD + + G +
Sbjct: 239 RKVAVPF--SVNSLAQAAAIASLA---AEDELLER-VDAVVAERDRVRAALRA-AGWTVP 291
Query: 385 EPQGAF 390
Q F
Sbjct: 292 PSQANF 297
|
Length = 352 |
| >gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 3e-32
Identities = 81/332 (24%), Positives = 155/332 (46%), Gaps = 14/332 (4%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE--- 123
+L+ R+ A + S + AG +I L+ G PD + E ++ +
Sbjct: 4 TLATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKES 63
Query: 124 -GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDE 181
G+T +G E A+ + + D ++L+ G++ ++ + +PGD
Sbjct: 64 YGYTL----SGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDI 119
Query: 182 VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT 241
+++P P + +Y ++A AT +P + +FL D +++ ++ +K++++IL P NP
Sbjct: 120 ILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPV 179
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301
++ ++ E+ KH ++V+ D Y + SF S+PG E + +N S
Sbjct: 180 PAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLS 238
Query: 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
K++++ G R+GY+ G + V A + +S G QKA AAL G K
Sbjct: 239 KSYSLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAAL---RNGAAFCEKNR 295
Query: 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
++ERRD LV F G + +P G+ +++
Sbjct: 296 GIYQERRDTLVDGFRTF-GWNVDKPAGSMFVW 326
|
Length = 399 |
| >gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 4e-32
Identities = 94/342 (27%), Positives = 166/342 (48%), Gaps = 48/342 (14%)
Query: 85 DQATALAQAGVSVIRLAAGEP---DFDTP--VL--IAEAGINAIREGFTRYTPNAGTLEL 137
D+A + AG +++L G P F TP V+ +A+ + EG Y+ + G
Sbjct: 136 DEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT--EG---YSDSKGLFSA 190
Query: 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 197
R AI + + + D I NG + I ++ A+ GDEV+IP+P + +
Sbjct: 191 RKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVN 250
Query: 198 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
+A T V + D + SK+T +++ +++ +P+NPTG++YP+ +L +I I
Sbjct: 251 LAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIA 310
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--I 314
+H +L++ SDEIY+ ++ HTS ASL P ++ +T +G SK+ + G+R+G+ +
Sbjct: 311 REH-QLIIFSDEIYDRLVMDGLEHTSIASLAPDLF--CVTFSGLSKSHMIAGYRIGWMIL 367
Query: 315 AGPKHFVA-------------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361
+G K C+ + +Q SI Q ALG G+ V +V
Sbjct: 368 SGNKRIAKDYIEGLNMLANMRLCSNVPAQ------SIVQ----TALG-GHQ--SVKDYLV 414
Query: 362 KAFR--ERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTY 399
R E+R+ + + + G+ +P+ AFY+F ID +
Sbjct: 415 PGGRVYEQRELVYNALNAIPGISAVKPKAAFYIFPKIDVKKF 456
|
Length = 517 |
| >gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 5e-32
Identities = 92/297 (30%), Positives = 138/297 (46%), Gaps = 20/297 (6%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKE 147
A AG +I L G PD TP I + ++ T RY+ + G LR A
Sbjct: 24 AARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYAR 83
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATP 203
G+ PD Q++ + G+K+ A+ +PGD ++ P P SYP A +A
Sbjct: 84 RFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNP---SYPIHAFGFIMAGGVI 140
Query: 204 VILPTRISENFL--LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AK 259
+P E F L+ V S K LI+ PSNPT V LD +V AK
Sbjct: 141 RSVPAEPDEEFFPALERAVRHS--IPKPIALIVNYPSNPTAYVAD---LDFYKDVVAFAK 195
Query: 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319
+++LSD Y I + S +PG + T+ SK F+M GWR+G+ G +
Sbjct: 196 KHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNER 255
Query: 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376
+AA +++S GA + Q A AAL + +++M + +++RRD LV+SFG
Sbjct: 256 LIAALTRVKSYLDYGAFTPIQVAATAALN---GPQDCIAEMRELYKKRRDVLVESFG 309
|
Length = 405 |
| >gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 101/339 (29%), Positives = 154/339 (45%), Gaps = 33/339 (9%)
Query: 95 VSVIRLAAGEPDF--DTPV---LIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149
+ +I + GEPD D V L EA R Y N G E + A +++
Sbjct: 44 MELIDMGVGEPDEMADESVVEVLCEEAKKPENRG----YADN-GIQEFKEAAARYMEKVF 98
Query: 150 GL-SYTPD-QILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA---DAT 202
G+ P +++ S G+K ++ A+L C +PGD ++ P YP
Sbjct: 99 GVKDIDPVTEVIHSIGSKPAL--AMLPSCFINPGDVTLMTVP---GYPVTGTHTKYYGGE 153
Query: 203 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
LP NFL D + + EK++LL L P+NPTG+V K +E+ AK
Sbjct: 154 VYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDF-AKENN 212
Query: 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
++V+ D Y + + SF S+PG E + ++ SKA+ MTGWRL ++ G + V
Sbjct: 213 IIVVQDAAYAALTFD-GKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVK 271
Query: 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382
A ++ SG QKAG+ AL E+ K+ + + R D LVK E+ G K
Sbjct: 272 AFATVKDNNDSGQFIAIQKAGIYAL----DHPEITEKIREKYSRRLDKLVKILNEV-GFK 326
Query: 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421
P G FYL++ + K EN+E +YL+
Sbjct: 327 AEMPGGTFYLYVKAPK----GTKSGIKFENAEEFSQYLI 361
|
Length = 410 |
| >gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 94/363 (25%), Positives = 165/363 (45%), Gaps = 23/363 (6%)
Query: 70 PRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R 127
R++ + P IT + A+ G +I + G PD TP I E + T
Sbjct: 4 TRIDRL-PPYVFNITAELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHG 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
Y+ + G LR AI ++ + P+ + +V+ G+K+ + +LA GD V++P
Sbjct: 63 YSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPN 122
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGS 243
P + + A IA A +P +F + LE + E K +++IL PSNPT
Sbjct: 123 PSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE---LERAIRESYPKPKMMILGFPSNPTAQ 179
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
+++ + ++ +LV+ D Y I+Y S +PG + + SK+
Sbjct: 180 CVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKS 238
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363
+ M GWR+G++ G V+A +I+S G + Q A +AAL + V + +
Sbjct: 239 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALE---GDQQCVRDIAEQ 295
Query: 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
++ RRD LVK E G + P+ + Y++ Y + G +E + + LL++
Sbjct: 296 YKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYAA----MGSLEFA----KKLLNE 346
Query: 424 AQV 426
A+V
Sbjct: 347 AKV 349
|
Length = 395 |
| >gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 79/311 (25%), Positives = 140/311 (45%), Gaps = 33/311 (10%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
S+I+L + E EA + RY P ELR A+
Sbjct: 35 SIIKLGSNENPLGPSPKAVEAIEKEL-SKIHRY-PEPDAPELREAL------SKYTGVPV 86
Query: 156 DQILVS-NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214
+ I+V +G + I + PGDEVIIP P + Y A+ A PV + E+F
Sbjct: 87 ENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYA--KREEDF 144
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
LD + + +TEK++++ LC+P+NPTG++ P+ ++I +I+ L+ + DE Y +
Sbjct: 145 SLDVDSVLNAITEKTKVIFLCTPNNPTGNLIPE---EDIRKILESTDALVFV-DEAY--V 198
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+A +T A ++ + FSK F + G R+GY P+ + + ++ F+
Sbjct: 199 EFAEYDYTPLA---LEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTPFS-- 253
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLF 393
+ +SQ A +AAL + E + K ++ + R++L + P A ++
Sbjct: 254 LTRLSQAAAIAAL----SDKEYIEKSIEHGIKSREYL------YNELPFKVYPSEANFVL 303
Query: 394 IDFSTYYGSEA 404
+D + E
Sbjct: 304 VDVTPMTAKEF 314
|
Length = 361 |
| >gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 86/324 (26%), Positives = 157/324 (48%), Gaps = 20/324 (6%)
Query: 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSA 140
+ + A +AG +I + G PD TP I + + ++ T Y+ + G +LR A
Sbjct: 20 EVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLA 79
Query: 141 ICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-- 197
IC+ K + + P+ +++ + G+K+ + V A+ +PGD I+P P +YP ++
Sbjct: 80 ICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDP---AYPIHSQAF 136
Query: 198 -IADATPVILPTRISENFLLDP----KVLESKLTE---KSRLLILCSPSNPTGSVYPKNL 249
+A +P +E+F LD + LE L E K + +++ P NPT + K+
Sbjct: 137 ILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSF 196
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309
+ + + AK R ++SD Y I + S + G + + SK++ M GW
Sbjct: 197 YERLVAL-AKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW 255
Query: 310 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369
R+G++ G K V A KI+S G + Q A AL V ++ + +R+RRD
Sbjct: 256 RVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALD---GDQSCVEEIRETYRKRRD 312
Query: 370 FLVKSFGELEGVKMSEPQGAFYLF 393
L++SF G ++ +P+ + +++
Sbjct: 313 VLIESFAN-AGWELQKPRASMFVW 335
|
Length = 403 |
| >gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 95/373 (25%), Positives = 169/373 (45%), Gaps = 32/373 (8%)
Query: 65 DVSLSPRV-NAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD----TPVLIAEAGIN 119
DVS+S P +T +TD A + + S+I+L+ G+P D TP + +A +
Sbjct: 5 DVSMSKHAGRVFNPLRT--VTDNAKP-SPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVE 61
Query: 120 AIREG-FTRYTPNAGTLELRSAI--------CHKLKEENGLSYTPDQILVSNGAKQSILQ 170
A+ Y P G+ E R A+ HK ++ + D +++ +G +IL
Sbjct: 62 AVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKK--DNVVLCSGVSHAILM 119
Query: 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 230
A+ A+C GD +++PAP + Y + + R +++ D + + ++++
Sbjct: 120 ALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTK 179
Query: 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290
LI+ +PSNP GS + + +++I R + + RL ++SDEIY +++ AT TS A
Sbjct: 180 ALIMTNPSNPCGSNFSRKHVEDIIR-LCEELRLPLISDEIYAGMVFNGATFTSVADFDTT 238
Query: 291 WERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAA----CNKIQSQFTSGASSISQKAGVA 345
R + + G +K + GWRLG+ + H K G S+ Q A
Sbjct: 239 VPR-VILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGE 297
Query: 346 ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTY--YG 401
A L E + ++V E L GE G+ + P+G+ +L +D +
Sbjct: 298 A--LLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIK 355
Query: 402 SEAEGFGKIENSE 414
S+ E + K+ E
Sbjct: 356 SDVEFYEKLLEEE 368
|
Length = 412 |
| >gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 87/314 (27%), Positives = 139/314 (44%), Gaps = 29/314 (9%)
Query: 113 IAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171
+ EA I I EG + +Y P G ELR I LK+ L D+ L++ GA +S+
Sbjct: 46 VREAMIRCIEEGEYCKYPPPEGFPELRELI---LKD---LGLDDDEALITAGATESLYLV 99
Query: 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTEKSR 230
+ A SPGD + P P ++ A A + +P E N+ L P++++ + E +R
Sbjct: 100 MRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTR 159
Query: 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290
L+ L P NP GS Y + + E A I A+ +L D Y +A + P
Sbjct: 160 LIYLIDPLNPLGSSYTEEEIKEFAEI-ARDNDAFLLHDCTYRD--FAREHTLAAEYAP-- 214
Query: 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG 350
E T+T FSK F M G R+G + + I G + I+Q+A +A L
Sbjct: 215 -EHTVTSYSFSKIFGMAGLRIGAVVATPDLIEVVKSIVIN-DLGTNVIAQEAAIAGL--- 269
Query: 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGK 409
E + ++ + + + + ++ E+EGV + P + ID S G
Sbjct: 270 KVKDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEA------GI-- 321
Query: 410 IENSESLCRYLLDK 423
+ E L YLL++
Sbjct: 322 --DPEDLVEYLLER 333
|
Length = 380 |
| >gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 2e-24
Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY 192
G+ E + A+ L + + P+ IL +NGA + + A+ PGD VI P +Y
Sbjct: 63 GSPEFKEAVA-SLYQ----NVKPENILQTNGATGANFLVLYALVEPGDHVISVYP---TY 114
Query: 193 PEMARIAD---ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249
++ I + A + +L D L + ++L+ + + +NPTG++ +
Sbjct: 115 QQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAY 174
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309
L+EI I A+ VLSDE+Y + S S+ ++E+ ++ N SK +++ G
Sbjct: 175 LEEIVEI-ARSVDAYVLSDEVYRPL----DEDGSTPSIADLYEKGISTNSMSKTYSLPGI 229
Query: 310 RLGYIAGPKHFVAACNK 326
R+G+IA + + K
Sbjct: 230 RVGWIAANEEVIDILRK 246
|
Length = 373 |
| >gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 26/257 (10%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSY 153
+I+LA+ E P+ + I AIR RY P+ EL++A+ K G+
Sbjct: 34 IIKLASNE----NPLGPSPKAIEAIRAAADELHRY-PDGSGFELKAALAEKF----GVD- 83
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213
P++I++ NG+ + + A PGDEVI + YP A+ A PV +P +++
Sbjct: 84 -PERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVP---AKD 139
Query: 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIY 271
+ D + + +T ++RL+ + +P+NPTG+ P +E+ R +A P L+VL DE Y
Sbjct: 140 YGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLPA---EEVERFLAGVPPDVLVVL-DEAY 195
Query: 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331
+ L + + FSKA+ + G R+GY P + A N+++ F
Sbjct: 196 AEYVRRKDYEDGLE-LVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQPF 254
Query: 332 TSGASSISQKAGVAALG 348
+S++ A VAAL
Sbjct: 255 N--VNSLALAAAVAALD 269
|
Length = 367 |
| >gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 84/321 (26%), Positives = 140/321 (43%), Gaps = 23/321 (7%)
Query: 87 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146
A A I L+ GEP TP + EA + G + Y G ELR AI L+
Sbjct: 20 AGVTPPASKPPIALSIGEPKHPTPAFVLEALRENL-HGLSTYPTTKGLPELRQAIARWLE 78
Query: 147 EENGLSYTPD---QILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPEMARIADA 201
L D +L NG ++++ AV +PG V++P PF+ Y A +A A
Sbjct: 79 RRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGA 138
Query: 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261
P L FL D + + + +LL +CSP NPTG+V LD + +++
Sbjct: 139 EPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLS---LDTLKKLIELAD 195
Query: 262 R--LLVLSDEIYEHIIY----APATHTSFASLPGM--WERTLTVNGFSKAFAMTGWRLGY 313
+ ++ SDE Y + + PA A+ G + R L + SK + G R G+
Sbjct: 196 QYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGF 255
Query: 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373
+AG + A + ++ +Q A +AA + + V + +RE+ +++
Sbjct: 256 VAGDAEILKAFLRYRTYHGCAMPIPTQLASIAA----WNDEQHVRENRALYREKFAAVLE 311
Query: 374 SFGELEGVKMSEPQGAFYLFI 394
G++ +++ P FYL+
Sbjct: 312 ILGQVLDLEL--PDAGFYLWP 330
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 |
| >gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 2e-22
Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 21/252 (8%)
Query: 144 KLKEE--NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 201
KL+EE S P I V NG+ + I +LA + GD VI P P + Y ++IA A
Sbjct: 63 KLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGA 122
Query: 202 TPVILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ P ++ E++ D ++ + +L+ LC+P+NPTGSV + ++I +I+ K
Sbjct: 123 VEI--PVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER---EDIIKIIEKS 177
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
++V+ + +E Y + + +E + + SKAF + G R+GY ++
Sbjct: 178 RGIVVVDEAYFE--FYG----NTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENI 231
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380
+ N ++S + +S+SQ + L G V+ + V R+ L+K ++ G
Sbjct: 232 LKYLNLVKSPYN--INSLSQVIALKVLRTG-----VLKERVNYILNERERLIKELSKIPG 284
Query: 381 VKMSEPQGAFYL 392
+K+ + F L
Sbjct: 285 IKVYPSKTNFIL 296
|
Length = 351 |
| >gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-20
Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 23/259 (8%)
Query: 116 AGINAIREGFTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173
A + AIRE R P A +L +A+ + +P+Q+ ++NG ++
Sbjct: 47 AAVEAIREAAERVHSYPKASHADLTAALADRW------DVSPEQVWLANGGDGALDYLAR 100
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP-KVLESKLTEKSRLL 232
A+ PGD V++P P + Y AR P +++F VL++ E R++
Sbjct: 101 AMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYDGE--RIV 158
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
L SP NPTGS P + ++ +A + LV+ DE Y P S +L +
Sbjct: 159 YLTSPHNPTGSEIPLDEVEALAERTDEET--LVVVDEAYGEFAERP----SAVALVEERD 212
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
+ FSKA+ + G RLGY P+ + A ++ + F AS ++ +AG+AAL
Sbjct: 213 DVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNTPFA--ASELACRAGLAALD---- 266
Query: 353 GGEVVSKMVKAFRERRDFL 371
E V + V+ R R+++
Sbjct: 267 DDEHVERTVETARWAREYI 285
|
Length = 357 |
| >gnl|CDD|165711 PLN00143, PLN00143, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 9e-20
Identities = 70/314 (22%), Positives = 127/314 (40%), Gaps = 25/314 (7%)
Query: 98 IRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLS 152
I G+P F T + +A + A+R F Y P G L R AI L +
Sbjct: 35 ISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQ 94
Query: 153 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV------IL 206
+PD + ++ G K + + + P +++P P +P++ A + +L
Sbjct: 95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRP---GFPDVETYAIFHHLEIRHFDLL 151
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
P + E +D +E+ E + +++ +P NP GSVY L++IA A+ +LV+
Sbjct: 152 PEKGWE---VDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAE-TARKLGILVI 207
Query: 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AGPKHFVAAC 324
+DE+Y HI++ L +T+ SK + + GW LG++ P + C
Sbjct: 208 ADEVYGHIVFGSKPFVPM-GLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQIC 266
Query: 325 ---NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
+ I+ + L + SK + R F E+ +
Sbjct: 267 EIADSIKKALNPAPFPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCI 326
Query: 382 KMSE-PQGAFYLFI 394
+ +GAF+ +
Sbjct: 327 MCPQKAEGAFFALV 340
|
Length = 409 |
| >gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (218), Expect = 3e-19
Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 47/334 (14%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFT 126
+ V + KP + V G I L E FD P + E ++ F
Sbjct: 2 IRELVKSFKPYRVVE-----------GNYRIWLDKNENPFDLPEELKEEIFEELKRVPFN 50
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
RY P+ + LR AI + I V NG+ + I + L G ++I
Sbjct: 51 RY-PHITSDPLREAIA------EFYGLDAENIAVGNGSDELI--SYLVKLFEGKHIVITP 101
Query: 187 PFWVSYPEMARIADATPVI-LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + Y A++ + PVI +P + E+F +D + + K + + + +CSP+NPTG++
Sbjct: 102 PTFGMYSFYAKL-NGIPVIDVPLK--EDFTIDGERIAEK-AKNASAVFICSPNNPTGNLQ 157
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
P+ +EI +++ V+ DE Y A + S L + + + FSKAF
Sbjct: 158 PE---EEILKVL--ETGKPVVLDEAY-----AEFSGKSLIGLIDEYPNLILLRTFSKAFG 207
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
+ G R GY + + A +I+ F+ ++ K + L L + ++ + +
Sbjct: 208 LAGIRAGYAIANEEIIDALYRIKPPFSLN--ILTMK--IVRLALDHYD--LIEERIDYII 261
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399
+ R+ + + GE + P A +L + Y
Sbjct: 262 KERERVRRELGE-----YAYPSDANFLLLKLDAY 290
|
Length = 337 |
| >gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-19
Identities = 62/190 (32%), Positives = 93/190 (48%), Gaps = 17/190 (8%)
Query: 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGL- 151
A + I L+ GEP TP I +A + +G Y AG LR AI L+ GL
Sbjct: 27 ADLPPISLSIGEPKHPTPAFIKDALAANL-DGLASYPTTAGLPALREAIAAWLERRYGLP 85
Query: 152 SYTPD-QILVSNGAKQ---SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP 207
+ P Q+L NG+++ + Q V+ PG V+ P PF+ Y A +A A P L
Sbjct: 86 ALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLN 145
Query: 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267
+ NF D + +++ +++LL +CSP NPTG+V P LD+ ++ A LS
Sbjct: 146 CDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLP---LDDWKKLFA-------LS 195
Query: 268 DEIYEHIIYA 277
D Y +I +
Sbjct: 196 DR-YGFVIAS 204
|
Length = 396 |
| >gnl|CDD|235742 PRK06207, PRK06207, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 75/324 (23%), Positives = 142/324 (43%), Gaps = 29/324 (8%)
Query: 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIR----------EGFTR-----YTPNAGTLE 136
Q+ + L GEP PV + ++A G R YT G +
Sbjct: 23 QSAAGLEALLRGEPLPGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDAD 82
Query: 137 LRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
+R + +L G D+++++ G + ++ AV A + GD+V I P + + ++
Sbjct: 83 IRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL 142
Query: 196 ARIADATPVILPTRI-----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250
+ ++P ++ + LD LE R+ + +P+NP G VY +
Sbjct: 143 VEFFEG--EMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAEEI 200
Query: 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310
+IA + ++ V+ D++Y ++Y ++T +LP E +T+ G SK +++G+R
Sbjct: 201 AQIAALARRY-GATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR 259
Query: 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRD 369
LG G + K+Q+ + A+ SQ A L ++ + + + + RD
Sbjct: 260 LGVAFGSPAIIDRMEKLQAIVSLRAAGYSQ----AVLRTWFSEPDGWMKDRIARHQAIRD 315
Query: 370 FLVKSFGELEGVKMSEPQGAFYLF 393
L++ +EGV + PQ YLF
Sbjct: 316 DLLRVLRGVEGVFVRAPQAGSYLF 339
|
Length = 405 |
| >gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 22/302 (7%)
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
R P+ G LR+AI + + + ++ ++G+ ++I + A+ PGDEV++
Sbjct: 46 RDGPSLGGEGLRAAIADRWRGGD-----AHVVMTTHGSSEAIYLVLTALLRPGDEVVVVD 100
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P + S +A P F D L + LT ++R +++ P NPTG+
Sbjct: 101 PAYHSLSHLAVATGCEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGASVT 160
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
LDE+ A+ +L+ D + +++ +++R ++ SKAF +
Sbjct: 161 PRELDELLERAARSGAVLLW-DNAFADLVH---DAPPLPDPSALYDRVISFGTLSKAFGL 216
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
G R+G+ GP +A +++ T S + + +A + + +A + ++ +A
Sbjct: 217 PGLRVGWCVGPADLLAELVRLRDYTTLSLSPLVEL--LAEVAVEHADALIGPRLAEARAN 274
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RR L + + V+ + P+G F F + LCR LL + V
Sbjct: 275 RRRLLDWAAAHPDVVRCTPPEGGVAAFPRFP-----------GHADVTDLCRRLLARHGV 323
Query: 427 LL 428
LL
Sbjct: 324 LL 325
|
Members of this family are the enzyme capreomycidine synthase, which performs the second of two steps in the biosynthesis of 2S,3R-capreomycidine from arginine. Capreomycidine is an unusual amino acid used by non-ribosomal peptide synthases (NRPS) to make the tuberactinomycin class of peptide antibiotic. The best characterized member is VioD from the biosynthetic pathway for viomycin [Cellular processes, Biosynthesis of natural products]. Length = 359 |
| >gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 3e-19
Identities = 79/282 (28%), Positives = 125/282 (44%), Gaps = 23/282 (8%)
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 179
A + TR P+ LRSA L G P+Q+L+ G+ ++I V A+C PG
Sbjct: 47 ADPDASTRRYPDPQPPGLRSA----LAALYGC--APEQLLIGRGSDEAIDLLVRALCVPG 100
Query: 180 -DEVIIPAPFWVSYPEMARIADATPVILP-TRISENFLLD-PKVLESKLTEKSRLLILCS 236
D V++ P + Y AR+ +A V +P ++ F D P ++ + L ++L+ LCS
Sbjct: 101 RDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCS 160
Query: 237 PSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RT 294
PSNP GS LD+I R + A + LV+ DE Y P+ A + RT
Sbjct: 161 PSNPAGSAIA---LDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLAVLRT 217
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 354
L SKA A+ R+G + +A + Q+ + + +A L
Sbjct: 218 L-----SKAHALAAARIGSLIANAELIAVLRRCQAPYPVPTPCAA----LAEQALSAPAL 268
Query: 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396
V ++ V R R+ L + +L GV+ P +L + F
Sbjct: 269 AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRF 310
|
Length = 364 |
| >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 5e-19
Identities = 77/283 (27%), Positives = 117/283 (41%), Gaps = 34/283 (12%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLELRSAICH 143
+IRL G+ P + EA NA+ E F Y P G LR AI
Sbjct: 27 RKKNPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASPETFRGYGPEQGYPFLREAI-- 84
Query: 144 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
+ + P++I +S+GAK + + + ++ P + V + P + +Y + +A
Sbjct: 85 -AENDYRGRIDPEEIFISDGAKCDVFR-LQSLFGPDNTVAVQDPVYPAYLDSNVMAGRAG 142
Query: 204 VI-----------LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252
V+ LP NF+ P++ E + ++ LCSP+NPTG+V K L E
Sbjct: 143 VLDDDGRYSKITYLPCTAENNFI--PELPEEPHID---IIYLCSPNNPTGTVLTKEQLKE 197
Query: 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312
+ +H L+L D Y I P+ S +PG + FSK TG RLG
Sbjct: 198 LVDYANEH-GSLILFDAAYSAFISDPSLPHSIFEIPGARFCAIEFRSFSKTAGFTGVRLG 256
Query: 313 YIAGPK-------HFVAAC-NKIQSQFTSGASSISQKAGVAAL 347
+ PK H V + Q +GAS Q+A A
Sbjct: 257 WTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAGY 299
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 |
| >gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 5e-19
Identities = 64/273 (23%), Positives = 102/273 (37%), Gaps = 34/273 (12%)
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
+ RY P+ ELR+A +L NGA Q + + + +PG V++
Sbjct: 41 WARY-PDPEYDELRAAAAAYYG------LPAASVLPVNGA-QEAIYLLPRLLAPGR-VLV 91
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
AP + Y R A V LP D L + L E + LL++C+P+NPTG +
Sbjct: 92 LAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALEE-ADLLVVCNPNNPTGRL 141
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKA 303
P L +A + LV+ DE + T S A + + + +K
Sbjct: 142 IPPETLLALAARLRARGGWLVV-DE-----AFIDFTPDASLAPQAARFPGLVVLRSLTKF 195
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA-SSISQKAGVAALGLGYAGGEVVSKMVK 362
F + G RLG++ +A ++ + + AG AAL A +
Sbjct: 196 FGLAGLRLGFVVAHPALIAR---LREALGPWTVNGPALAAGRAAL----ADTAWQAATRA 248
Query: 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
R L L G+++ F L
Sbjct: 249 RLAAERARLAALLARLGGLRVVGGTALFLLVRT 281
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see pfam00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 330 |
| >gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 68/307 (22%), Positives = 129/307 (42%), Gaps = 36/307 (11%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
+++LA+ E + + EA + E P+ ELR+ + L + +
Sbjct: 31 IVKLASNENPYGPSPKVKEAIAAHLDE--LALYPDGYAPELRTKVAKHLGVD------EE 82
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
Q+L G + I A+ +PG ++ P + Y A I A +P + +
Sbjct: 83 QLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGH 139
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIY-EHI 274
D + + + E+++++ +C+P+NPTG+ V + LL + + +LV+ DE Y E++
Sbjct: 140 DLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFLESV---PSHVLVVLDEAYYEYV 196
Query: 275 IYAPATHT-----SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329
T + +L + RT FSKA+ + R+GY + + N +
Sbjct: 197 TAEDYPDTLPLLEKYENL--IVLRT-----FSKAYGLAALRVGYGIASEELIEKLNIARP 249
Query: 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389
F + + I+Q A +AAL + + V+ E + E G+ Q
Sbjct: 250 PFNT--TRIAQYAAIAALE----DQAFLKECVEKNAEGLEQYYAFCKEY-GLFYYPSQTN 302
Query: 390 FYLFIDF 396
F +F+D
Sbjct: 303 F-IFVDT 308
|
Length = 359 |
| >gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 86/311 (27%), Positives = 140/311 (45%), Gaps = 30/311 (9%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
+++L A E + P + EA N F P+ + LR+A+ E++GL
Sbjct: 53 DIVKLDANENPYGPPPEVLEALGNM---KFPYVYPDPESRRLRAALA----EDSGLE--S 103
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
+ ILV GA + I + V PGD++I P + Y A + A + +P + +F
Sbjct: 104 ENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVP--RTPDFS 161
Query: 216 LD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
LD P+++E+ T K +LL L SP+NP GS+ + L +I + P L+VL DE Y
Sbjct: 162 LDVPRIVEAVETHKPKLLFLTSPNNPDGSIISDDDLLKILEL----PILVVL-DEAYIEF 216
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+T S ++ + + FSK + G R+GY A P + + + +
Sbjct: 217 ----STQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQPYN-- 270
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
S ++ A AAL + + + A E R+ L FG L+ V EP + FI
Sbjct: 271 VSVAAEVAACAALS----NPKYLEDVKNALVEERERL---FGLLKEVPFLEPYPSDANFI 323
Query: 395 DFSTYYGSEAE 405
G +A+
Sbjct: 324 LCRVTSGRDAK 334
|
Length = 380 |
| >gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 7e-18
Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 35/238 (14%)
Query: 97 VIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 151
V+ L G+P F T +A A+R G + Y+ G L R AI L + L
Sbjct: 54 VLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRD--L 111
Query: 152 SYT--PDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIAD 200
Y D I ++ G Q+I + +VLA PG +++P P + Y A R D
Sbjct: 112 PYELSTDDIYLTAGCAQAIEIIMSVLA--QPGANILLPRPGYPLYEARAVFSGLEVRHFD 169
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+LP R E +D + +E+ E + +++ +P+NP GSVY L +IA A+
Sbjct: 170 ----LLPERGWE---VDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAE-TARK 221
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT---LTVNGFSKAFAMTGWRLGYIA 315
+LV++DE+Y+H+ + F + G++ LT+ SK + + GWRLG+IA
Sbjct: 222 LGILVIADEVYDHLTFG---SKPFVPM-GVFGEVAPVLTLGSISKRWVVPGWRLGWIA 275
|
Length = 430 |
| >gnl|CDD|215119 PLN02187, PLN02187, rooty/superroot1 | Back alignment and domain information |
|---|
Score = 82.1 bits (202), Expect = 7e-17
Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 7/225 (3%)
Query: 96 SVIRLAAGEPD----FDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENG 150
+++ L G+P F T + +A ++ +R G Y P AG L R A+ + +
Sbjct: 67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLP 126
Query: 151 LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210
TP+ I ++ G Q I ++ P +++P P + Y A +
Sbjct: 127 HKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLP 186
Query: 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270
+ + +D + +E+ E + +++ +P+NP G+VY + L ++A A+ ++V+SDE+
Sbjct: 187 EKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAE-TARKLGIMVISDEV 245
Query: 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
Y+ I+ S + LT+ G SK + + GW++G+IA
Sbjct: 246 YDRTIFGDNPFVSMGKFASIVP-VLTLAGISKGWVVPGWKIGWIA 289
|
Length = 462 |
| >gnl|CDD|180947 PRK07366, PRK07366, succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-16
Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 29/322 (9%)
Query: 85 DQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR-YTPNAGTLELRSAIC 142
D+A A A AG +I L+ G D P EA ++ + T Y GTL+ R A
Sbjct: 19 DRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAA 78
Query: 143 HKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 201
++ GL+ P+ ++L G+++ LAV +PGD ++ P + S+ +A
Sbjct: 79 QWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGG 138
Query: 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261
+P R +FL + +++ ++RL++L P NPT ++ P + E +H
Sbjct: 139 QIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHD 198
Query: 262 RLLV----LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIA 315
+LV D +++ + P+ L E+++++ F SK++ M G+R+G+
Sbjct: 199 LVLVHDFPYVDLVFDGEVEPPSI------LQADPEKSVSIEFFTLSKSYNMGGFRIGFAI 252
Query: 316 GPKHFVAACNKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDF 370
G + A ++++ +Q G +AAL V + V+ FR+RRD
Sbjct: 253 GNAQLIQALRQVKA-----VVDFNQYRGILNGAIAALT---GPQATVQQTVQIFRQRRDA 304
Query: 371 LVKSFGELEGVKMSEPQGAFYL 392
+ + ++ G + P+ Y+
Sbjct: 305 FINALHQI-GWPVPLPEATMYV 325
|
Length = 388 |
| >gnl|CDD|180734 PRK06855, PRK06855, aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 84/313 (26%), Positives = 126/313 (40%), Gaps = 47/313 (15%)
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P G LE R + + G TPD I+ NG +I + + VI P+P
Sbjct: 69 YCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAI-AKIYGLLRREARVIGPSP 127
Query: 188 FWVSYP-----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LLILCS 236
+Y E A A PV N+ D LE+K+ K LLI +
Sbjct: 128 ---AYSTHSSAEAAH-AGYPPVTYRLDPENNWYPDLDDLENKV--KYNPSIAGILLI--N 179
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL----PGMWE 292
P NPTG+VYPK +L EI I A+ L ++ DEIY +I+Y + + PG+
Sbjct: 180 PDNPTGAVYPKEILREIVDI-AREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGI-- 236
Query: 293 RTLTVNGFSKAFAMTGWRLGYIA---GPK--HFVAACNKIQSQFTSGASSIS--QKAGVA 345
+ G SK G R G+I K F N I + S + Q A
Sbjct: 237 ---ALKGISKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPR 293
Query: 346 ALG----LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401
+ Y + + K + +R + + ++ G+K++ GAFY+ + F
Sbjct: 294 IMSHPEYKNY-----LKERNKRYEKRSNIAYEKLKDVPGLKVNRTNGAFYMTVVFEDGVL 348
Query: 402 SEAEGFGKIENSE 414
+ + IEN E
Sbjct: 349 NNKQSL-PIENPE 360
|
Length = 433 |
| >gnl|CDD|181053 PRK07590, PRK07590, L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 7e-16
Identities = 77/291 (26%), Positives = 108/291 (37%), Gaps = 62/291 (21%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAI---------REGFTRYTPNAGTLELRSAICHKLK 146
+IRL G D + A I A+ E F Y P G LR I
Sbjct: 35 KIIRLGIG----DVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDY 90
Query: 147 EENGLSYTPDQILVSNGAK------QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD 200
+ G + D+I +S+GAK I P + + + P + Y + +A
Sbjct: 91 QARGCDISADEIFISDGAKCDTGNILDIF-------GPDNTIAVTDPVYPVYVDTNVMAG 143
Query: 201 ATP-----------VILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248
T V LP NF+ + P+ EK ++ LC P+NPTG+V K
Sbjct: 144 RTGEANEDGRYSGIVYLPCTAENNFVPELPE-------EKVDIIYLCFPNNPTGTVLTK- 195
Query: 249 LLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+++ V AK L+L D YE I P+ S + G E + FSK
Sbjct: 196 --EQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGF 253
Query: 307 TGWRLGYIAGPKHFVAAC------------NKIQSQFTSGASSISQKAGVA 345
TG R Y PK N+ QS +G S I Q+A A
Sbjct: 254 TGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEA 304
|
Length = 409 |
| >gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 8e-16
Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 21/234 (8%)
Query: 92 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLK 146
+ G VI L G+P F T + EA ++A++ F Y P G + R AI L
Sbjct: 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLS 87
Query: 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-------RIA 199
+ + D + +++G Q+I A+ + PG +++P P + Y A R
Sbjct: 88 RDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYV 147
Query: 200 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259
D +LP + E +D +E+ + + L++ +P NP G+VY L +IA A+
Sbjct: 148 D----LLPEKGWE---VDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAE-TAE 199
Query: 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313
++LV++DE+Y H+ + G LT+ SK + + GWRLG+
Sbjct: 200 KLKILVIADEVYGHLAFGSNPFVPMGVF-GSIVPVLTLGSLSKRWIVPGWRLGW 252
|
Length = 409 |
| >gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 88/315 (27%), Positives = 125/315 (39%), Gaps = 35/315 (11%)
Query: 87 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146
A A + ++ L+ G P P LI A A Y GT ELR AI L+
Sbjct: 14 AKAASHPD-GIVDLSVGTPVDPVPPLIRAALAAAADA--PGYPQTWGTPELREAIVDWLE 70
Query: 147 EENG-LSYTPDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
G P +L G K+ + L +L + PGD V+IP + +Y A +A ATP
Sbjct: 71 RRRGVPGLDPTAVLPVIGTKELVAWLPTLLGL-GPGDTVVIPELAYPTYEVGALLAGATP 129
Query: 204 VILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHP 261
V + LDP L+ L SP NPTG V +DE+ IV A+
Sbjct: 130 V----AADDPTELDP--------VGPDLIWLNSPGNPTGRVLS---VDELRAIVAWARER 174
Query: 262 RLLVLSDEIYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317
+V SDE Y + + G L V+ SK + G+R G++AG
Sbjct: 175 GAVVASDECYLELGWEGRPVSILDPRVCG--GDHTGLLAVHSLSKRSNLAGYRAGFVAGD 232
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377
VA ++ + Q A VAALG V++ + RR L + E
Sbjct: 233 PALVAELLTVRKHAGLMVPAPVQAAMVAALG----DDGHVAEQKARYAARRAQLKPAL-E 287
Query: 378 LEGVKMSEPQGAFYL 392
G ++ + YL
Sbjct: 288 KAGFRIDHSEAGLYL 302
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 357 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-15
Identities = 77/301 (25%), Positives = 121/301 (40%), Gaps = 48/301 (15%)
Query: 110 PVLIAEAGINAIREGF---TRYTPNAGTLELRSAIC--HKLKEENGLSYTPDQILVSNGA 164
P+ + E+ AI E Y P+ LELR I +L EN +++ NGA
Sbjct: 30 PLGVPESLKQAITENLDKLVEY-PDPDYLELRKRIASFEQLDLEN--------VILGNGA 80
Query: 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224
+ I V P +V+I AP + Y + DA NF + VLE +
Sbjct: 81 TELIFNIVKVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAANEIVLE-E 137
Query: 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284
+ E+ L+ LC+P+NPTG + K + +I + + ++ DE +F
Sbjct: 138 IKEEIDLVFLCNPNNPTGQLISKEEMKKIL-DKCEKRNIYLIIDE-------------AF 183
Query: 285 ASLPGMWERTLTVN------------GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332
E +N F+K FA+ G RLGY +A K+
Sbjct: 184 MDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA--EKLLQ--M 239
Query: 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392
SI+ A +A L E + K ++ +E +DFL E +G+K+ +P F
Sbjct: 240 REPWSINTFADLAGQTL-LDDKEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVNFIF 298
Query: 393 F 393
F
Sbjct: 299 F 299
|
Length = 354 |
| >gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 4e-15
Identities = 84/311 (27%), Positives = 135/311 (43%), Gaps = 33/311 (10%)
Query: 103 GEPDFDTPVL-------------IAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLK 146
G P D PV + A+ E G RY P+ + LR+ + L
Sbjct: 21 GAPQLDVPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLT 79
Query: 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
+ G+ T + + +NG+ + + Q + A PG + P + +P +AR V
Sbjct: 80 AQTGVGLTVENVWAANGSNEILQQLLQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEG 139
Query: 207 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
P +F LD + + E + ++ L SP+NPTG+ P LD++ I+ P ++V
Sbjct: 140 PRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALP---LDDVEAILDAAPGIVV 194
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325
+ DE Y T ++ LP + R + SKAFA G RLGY+A V A
Sbjct: 195 V-DEAY-AEFRRSGTPSALTLLPE-YPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALR 251
Query: 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385
++ + S+++Q A AAL + + V A R RD +V EL G++++
Sbjct: 252 LVRLPYH--LSAVTQAAARAAL----RHADELLASVAALRAERDRVVAWLREL-GLRVAP 304
Query: 386 PQGAFYLFIDF 396
F LF F
Sbjct: 305 SDANFVLFGRF 315
|
Length = 368 |
| >gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 75.1 bits (184), Expect = 1e-14
Identities = 55/215 (25%), Positives = 100/215 (46%), Gaps = 17/215 (7%)
Query: 133 GTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV 190
G + R AI H + + G +++ P+++++S GA + + + PGD +IP+P++
Sbjct: 95 GLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYA 154
Query: 191 SYPEMARIADATPVI-LPTRISENFLLDPKVLE------SKLTEKSRLLILCSPSNPTGS 243
++ R +I +P S+NF L + + +K + LIL +PSNP G+
Sbjct: 155 AFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGT 214
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT------- 296
+ K+ L + R V + LV+ DEIY ++A S A + + +
Sbjct: 215 MLDKDTLTNLVRFVTRKNIHLVV-DEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHI 273
Query: 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331
V SK + G+R+G + V +C + S F
Sbjct: 274 VYSLSKDMGLPGFRVGIVYSFNDSVVSCARKMSSF 308
|
Length = 496 |
| >gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 86/329 (26%), Positives = 137/329 (41%), Gaps = 44/329 (13%)
Query: 91 AQAGVSVI-RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149
A+ GV I +L + E + A I E Y P+ LR AI +
Sbjct: 31 ARYGVPRIAKLGSNENPLGPSPAVRRA-FADIAELLRLY-PDPQGRALREAIAARTGVPA 88
Query: 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII--PA-PFWVSYPEM--ARIADATPV 204
D+I++ NG++ I AV PGD V+ P+ P YP M AR + V
Sbjct: 89 ------DRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLHEDYPTMMGAR-VERVTV 141
Query: 205 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRL 263
+ + D L + + R+L+ +PSNP GS D++AR++ A P
Sbjct: 142 ------TPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTA---DQLARVLDATPPET 192
Query: 264 LVLSDEIYEHIIYAPATHTSFA-----SLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGP 317
L++ DE Y ++ LP + RT FSKA+ + G R+GY +
Sbjct: 193 LIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRT-----FSKAYGLAGLRVGYGLVSD 247
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377
V +++++ F + +Q A +AAL + V+ + A RER +K
Sbjct: 248 PELVGLLDRVRTPFN--VNGAAQAAALAALDDEEHLAKGVA-LALAERER----LKKELA 300
Query: 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406
G +++ P A +LF D + AE
Sbjct: 301 EMGYRIA-PSRANFLFFDARRPASAVAEA 328
|
Length = 371 |
| >gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 78/338 (23%), Positives = 129/338 (38%), Gaps = 66/338 (19%)
Query: 118 INAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI---LQAVLA 174
+NAI G YT +AG +R A+ ++ +G+ P I +++GA I LQ ++
Sbjct: 101 LNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIG 160
Query: 175 VCSPGDEVIIPAPFWVSYP-EMARIA--DATPVILPTRISENFLLDPKVLESKLTE---- 227
P D V+IP P YP A I V + + LD + LE +
Sbjct: 161 --DPSDGVMIPIP---QYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRN 215
Query: 228 --KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSF 284
R L++ +P NPTG V +++++EI + + +++++DE+Y+ IY SF
Sbjct: 216 GITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEK-GIVLMADEVYQENIYDGEKPFISF 274
Query: 285 ----ASLPGMWERTLTVNGF---SKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
LP + + + F SK G R GY I +
Sbjct: 275 RKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYF--------ELTNIPPEVR---- 322
Query: 337 SISQKAGVAALGL--GYAGGEVVSKMVK---------------------AFRERRDFLVK 373
Q +A++ L G + M + + R + L
Sbjct: 323 --EQIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTD 380
Query: 374 SFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGK 409
++EGV +GA Y F I+ EA+ G
Sbjct: 381 ELNKIEGVSCQPVEGAMYAFPRIELPEKAIQEAKERGL 418
|
Length = 481 |
| >gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 51/324 (15%)
Query: 87 ATALAQA---GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 143
A A A A G+ + L+ G P P +I EA A Y AGT ELR AI
Sbjct: 18 AKATAAAHPDGI--VDLSVGTPVDPVPPVIQEALAAA--ADAPGYPTTAGTPELREAIVG 73
Query: 144 KLKEENGLSY-TPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPAPFWVSYP--EM-ARI 198
L G++ P +L G+K+ + L PGD V+IP ++YP E+ AR+
Sbjct: 74 WLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPE---LAYPTYEVGARL 130
Query: 199 ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV- 257
A AT V R L P ++ L+ L SPSNPTG V +D + ++V
Sbjct: 131 AGATVV----RADSLTELGP--------QRPALIWLNSPSNPTGRVLG---VDHLRKVVA 175
Query: 258 -AKHPRLLVLSDEIYEHIIYAPAT----HTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312
A+ +V SDE Y + + G L V+ SK + G+R G
Sbjct: 176 WARERGAVVASDECYLELGWDAEPVSILDPRVCG--GDHTGLLAVHSLSKQSNLAGYRAG 233
Query: 313 YIAGPKHFVAACNKIQSQFTSGASSIS----QKAGVAALGLGYAGGEVVSKMVKAFRERR 368
++AG VA +++ A + Q A VAALG V + + + RR
Sbjct: 234 FVAGDPALVAELLEVRKH----AGMMVPAPVQAAMVAALG----DDAHVREQRERYARRR 285
Query: 369 DFLVKSFGELEGVKMSEPQGAFYL 392
L + E G ++ + YL
Sbjct: 286 AVLRPAL-EAAGFRVDHSEAGLYL 308
|
Length = 364 |
| >gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 29/233 (12%)
Query: 153 YTPDQILVSNGAKQS--ILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPV-ILPT 208
+ PD+I+++ GA + +L +LA PGD +++P P+ YP R + T V I+P
Sbjct: 118 FDPDRIVLTAGATAANELLTFILA--DPGDALLVPTPY---YPGFDRDLRWRTGVKIVPI 172
Query: 209 R--ISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
S NF + P+ LE+ E + R +++ +PSNP G+ +++L++I V +
Sbjct: 173 HCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRK 232
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASL------PGMWERTLTVNGFSKAFAMTGWRLGYI 314
LV SDEIY +++ + S A + G+ ER V SK + G+R+G I
Sbjct: 233 NIHLV-SDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTI 291
Query: 315 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
V + S FT SS +Q + L + E ++ RER
Sbjct: 292 YSYNDKVVTTARRMSSFTL-VSSQTQHLLASML----SDEEFTENYIRTNRER 339
|
Length = 447 |
| >gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-13
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 26/169 (15%)
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISE 212
P+Q+LVS GA + I + A C PG D ++ P + Y A +PT +
Sbjct: 73 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTL--D 130
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGS-VYPKNLLD--EIARIVAKHPRLLVLSDE 269
N+ LD + L + +++ +CSP+NPTG+ + P++L E+ R + +V++DE
Sbjct: 131 NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTR-----GKAIVVADE 184
Query: 270 IYEHIIYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGY 313
Y I + P S A + RTL SKAFA+ G R G+
Sbjct: 185 AY--IEFCP--QASLAGWLAEYPHLVILRTL-----SKAFALAGLRCGF 224
|
Length = 351 |
| >gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 7e-13
Identities = 72/281 (25%), Positives = 120/281 (42%), Gaps = 32/281 (11%)
Query: 114 AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173
AE +N RY P+ L++A+ + G +L+ NG+ + I L
Sbjct: 53 AEVALN-------RY-PDPRAAALKAALRAAMGVPAGAD-----VLLGNGSDELIQLLAL 99
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD-PKVLESKLTEKSRLL 232
A PG V+ P P +V Y A++A V +P +F LD P +L + + L+
Sbjct: 100 ACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALV 157
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
L P+NPTG+++ ++ RI+ P L+V+ DE Y A S+ +
Sbjct: 158 FLAYPNNPTGNLFDD---ADVERIIEAAPGLVVV-DEAY----QPFAGD-SWLPRLARFP 208
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
L + SK + G RLGY+AG ++A +K++ + + ++Q + AL
Sbjct: 209 NLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPYN--VNVLTQATALFAL----E 261
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
+V+ R R L + L GV + F L
Sbjct: 262 HVDVLDAQAAQLRAERTRLAAALAALPGVTVFPSAANFILV 302
|
Length = 356 |
| >gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 36/285 (12%)
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSY--TPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
RY P+ G L+ AI + E S TP I V NG+ + I ++A C G+ I+
Sbjct: 62 RY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEGSIL 120
Query: 185 PAPFWVSYPEMARIADAT---PVILPTRISENFLLDPKVLESKLTEKS----RLLILCSP 237
A S M I T PV+ R E F +D +S + + R++ + P
Sbjct: 121 VAEPTFS---MYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHP 177
Query: 238 SNPTGSVYPKNLL--DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT- 294
++PTG N L E+ + + +LV+ DE Y + + T + + +
Sbjct: 178 NSPTG-----NPLTAAELEWLRSLPEDILVVIDEAY----FEFSQTTL---VGELAQHPN 225
Query: 295 -LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG 353
+ + FSKAF + R+GY G +A K++ + S SQ A AL
Sbjct: 226 WVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVRLPYN--LPSFSQLAAQLALE---HR 280
Query: 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398
E+++ + + +E RD L ++ EL +++ P A +L++ S
Sbjct: 281 QELLAAIPEILQE-RDRLYQALQELPQLRVW-PSAANFLYLRLSQ 323
|
Length = 374 |
| >gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEH 273
L DP + + L L +PSNP L++IA IV + P L++++D++Y
Sbjct: 237 LRDPSI---------KALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYG- 286
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
+ + FA LP T+ V FSK F TGWRLG IA
Sbjct: 287 -TFVDDFRSLFAVLP---YNTILVYSFSKYFGATGWRLGVIA 324
|
Length = 527 |
| >gnl|CDD|163513 TIGR03801, asp_4_decarbox, aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-12
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%)
Query: 178 PGDEVIIPAPFWVSYPEMARIAD---------ATPVILPTRISENF-------LLDPKVL 221
GD++ + P + Y E+ + A + + + L DP +
Sbjct: 183 KGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSI- 241
Query: 222 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPAT 280
+ L + +PSNP +++I IVA P L++L+D++Y +
Sbjct: 242 --------KALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYG--TFVDDF 291
Query: 281 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
+ FA LP T+ V FSK F TGWRLG IA
Sbjct: 292 RSLFAELP---YNTIGVYSFSKYFGATGWRLGTIA 323
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1) [Energy metabolism, Amino acids and amines]. Length = 521 |
| >gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 64/279 (22%), Positives = 120/279 (43%), Gaps = 24/279 (8%)
Query: 96 SVIRLAAGEPDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 154
S ++LA+ E F +P ++ E + + P+ G LR I +KL +
Sbjct: 30 SFVKLASNENPFGCSPRVLDELQKSWLDHALY---PDGGATTLRQTIANKLHVKM----- 81
Query: 155 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214
+Q+L +G + I AV GD ++ + Y A I + N
Sbjct: 82 -EQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NG 137
Query: 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
+ D + S + ++++ +C+P+NPTG+ L + ++++ L+V+ + YE++
Sbjct: 138 VYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYV 196
Query: 275 IYAPATHTSFASLPGMWER---TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331
T F + E+ L + FSKA+ + +R+GY G + + N ++ F
Sbjct: 197 -----TAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRLPF 251
Query: 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370
SS++QKA A G E+V + R+ F
Sbjct: 252 N--VSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESF 288
|
Length = 366 |
| >gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-11
Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 36/252 (14%)
Query: 80 TVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI---------AEAGINAIREGFT---R 127
A A A A + AA P + V + + A +A R
Sbjct: 19 AAAALGLLAAAAAA----AKRAAAPPAAEGAVFLNANECPLGPSPAARDAAARSAALSGR 74
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y +LR+ + GL D ++ G+ + + AVLA SP ++ P
Sbjct: 75 YDLELED-DLRTLFA----AQEGLP--ADHVMAYAGSSEPLNYAVLAFTSPTAGLVTADP 127
Query: 188 FWVSYPEMARIADATPV-ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
+Y R ADA + + + D K + + + L+ +C+P+NPTG+V P
Sbjct: 128 ---TYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTP 183
Query: 247 KNLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
+ +I ++A P ++L DE Y H AP S L + + + FSK +
Sbjct: 184 R---ADIEWLLANKPAGSVLLVDEAYIHFSDAP----SVVDLVAQRKDLIVLRTFSKLYG 236
Query: 306 MTGWRLGYIAGP 317
M G RLG A
Sbjct: 237 MAGMRLGLAAAR 248
|
Length = 370 |
| >gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 12/161 (7%)
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISE 212
P+QIL S GA ++I + A C PG + I A F +Y A A+ V + ++
Sbjct: 76 APEQILTSRGADEAIELLIRAFCEPGQDSI--ACFGPTYGMYAISAETFNVGVKALPLTA 133
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
++ L +E + ++L+ +C+P+NPTG+V + +I +++ P +V+ DE Y
Sbjct: 134 DYQLPLDYIEQ--LDGAKLVFICNPNNPTGTVIDR---ADIEQLIEMTPDAIVVVDEAY- 187
Query: 273 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313
I + P S A L + + + SKAFA+ G R G+
Sbjct: 188 -IEFCPE--YSVADLLASYPNLVVLRTLSKAFALAGARCGF 225
|
Length = 354 |
| >gnl|CDD|180281 PRK05839, PRK05839, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 6e-11
Identities = 68/225 (30%), Positives = 99/225 (44%), Gaps = 15/225 (6%)
Query: 100 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159
L GEP F+TP I +A N +Y +AG LR A K + ++++
Sbjct: 29 LTIGEPQFETPKFIQDALKNNAHL-LNKYPKSAGEESLREAQRGFFKRRFKIELKENELI 87
Query: 160 VSNGAKQSIL---QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN-FL 215
+ G ++ + Q VL + P PF+ Y E A IA V+L EN F
Sbjct: 88 PTFGTREVLFNFPQFVLFD-KQNPTIAYPNPFYQIY-EGAAIASRAKVLLMPLTKENDF- 144
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE----IY 271
P + E +L E L+IL SP+NPTG L E ++ KH +L ++DE IY
Sbjct: 145 -TPSLNEKELQE-VDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFIL-INDECYSEIY 201
Query: 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316
E+ S ++ L +N SK + G R G+IAG
Sbjct: 202 ENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAG 246
|
Length = 374 |
| >gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-10
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 13/143 (9%)
Query: 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSF 284
E + L+ L +P NP GS +P +I + P LLVL DE Y APA +
Sbjct: 154 ENAPLVYLANPDNPMGSWHPA---ADIVAFIEALPETTLLVL-DEAYCET--APAG--AA 205
Query: 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGV 344
+ + + FSKA+ + G R+GY G + A +K+++ F G + I+Q A +
Sbjct: 206 PPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNHF--GMNRIAQAAAL 263
Query: 345 AALGLGYAGGEVVSKMVKAFRER 367
AAL EVV K + A R+R
Sbjct: 264 AALKDQAYLAEVVGK-IAAARDR 285
|
Length = 369 |
| >gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 179 GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
+VIIP + Y +AR A + P DP+ LE +L E++ ++ C+P+
Sbjct: 77 DRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLE-ELVERNSVVFFCNPN 127
Query: 239 NPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297
NP G Y K L + + + L++ DE + I + S G E + +
Sbjct: 128 NPDGKFYNFKELKPLLDAVEDR--NALLILDEAF--IDFVK----KPESPEG--ENIIKL 177
Query: 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 347
F+K++ + G R+GY+ G F A ++ ++ G++ G A L
Sbjct: 178 RTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPWSIGST------GYAFL 218
|
Length = 311 |
| >gnl|CDD|177876 PLN02231, PLN02231, alanine transaminase | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 73/296 (24%), Positives = 129/296 (43%), Gaps = 37/296 (12%)
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI-LQAVLAVCSPGDEVIIPA 186
Y+ + G LR AI ++ +G P+ I +++GA ++ + L + S D ++ P
Sbjct: 164 YSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPI 223
Query: 187 PFWVSYPEMARIADATPVILPTRISE--NFLLDPKVLESKLTEKS------RLLILCSPS 238
P + Y A IA ++P + E + L+ L+ +L + R L++ +P
Sbjct: 224 PQYPLYS--ASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPG 281
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLP---GMWERT 294
NPTG V + +I K L++L+DE+Y+ +Y P SF + G E+
Sbjct: 282 NPTGQVLAEENQRDIVEF-CKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKD 340
Query: 295 LTVNGF---SKAF-AMTGWRLGYIA----GPK-----HFVAA---CNKIQSQFTSGASSI 338
+++ F SK + G R GY+ + VA+ C+ I Q +
Sbjct: 341 ISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMS 400
Query: 339 SQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
K G + A + ++S + + R L + LEGV ++ +GA YLF
Sbjct: 401 PPKPGDESYESYMAEKDGILSSLAR----RAKTLEDALNSLEGVTCNKAEGAMYLF 452
|
Length = 534 |
| >gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 6e-08
Identities = 59/241 (24%), Positives = 108/241 (44%), Gaps = 29/241 (12%)
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
+ + V NGA + I +L D + P + Y A+ A + +P
Sbjct: 77 NNVSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVP------LT 126
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 275
D ++ E + E + I +P+NPTG V+ + +EI RI+ K + L + YE
Sbjct: 127 KDLRIPEVNVGEGDVVFI-PNPNNPTGHVFER---EEIERIL-KTGAFVALDEAYYEF-- 179
Query: 276 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335
S+ L +E + FSKAF++ R+GY+ + F+ A N+++ F
Sbjct: 180 ----HGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLPFN--V 233
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF-YLFI 394
S +SQ AL E+ + K E R+ + + E+ G ++++ +G F ++F+
Sbjct: 234 SYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFIFM 288
Query: 395 D 395
+
Sbjct: 289 E 289
|
Length = 335 |
| >gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 26/211 (12%)
Query: 118 INAIREGFT--RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175
I AI+ + R+ P+ ELR A+ + P+ IL NGA + +L
Sbjct: 41 IAAIQSALSALRHYPDPDYRELRLALAQHHQ------LPPEWILPGNGAAE-LLTWAGRE 93
Query: 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS--RLLI 233
+ V + P + Y R AT LP + + L++ + + L+
Sbjct: 94 LAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLTPNDGLL 153
Query: 234 LCSPSNPTGSVYPKN----LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289
L +P NPTG ++ + LL++ A +V + L + + +I A + + L
Sbjct: 154 LNNPHNPTGKLWSREAILPLLEQFALVVVDEAFMDFLPPDAEQSLIPCLAEYPNLIIL-- 211
Query: 290 MWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 319
R+LT K +++ G RLGY IA P
Sbjct: 212 ---RSLT-----KFYSLPGLRLGYAIAHPDR 234
|
Length = 360 |
| >gnl|CDD|177996 PLN02368, PLN02368, alanine transaminase | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 124 GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEV 182
G Y+ + G +R + ++ +G P+ I +++GA + ++Q + AV D V
Sbjct: 99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGV 158
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKS------RLLILCS 236
++P P + Y + T V SEN+ LD L + + R +++ +
Sbjct: 159 LVPVPQYPLYSATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIIN 218
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
P NPTG + L EI + RL++L DE+Y+ IY
Sbjct: 219 PGNPTGQCLSEANLREILKF-CYQERLVLLGDEVYQQNIY 257
|
Length = 407 |
| >gnl|CDD|181512 PRK08637, PRK08637, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 27/207 (13%)
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQI---LVSNGAKQSILQAVLAVCS-----PG 179
Y P G ELR K+ EN S + ++ +V+N L L++ + G
Sbjct: 40 YAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNA-----LTHGLSLVADLFVDQG 93
Query: 180 DEVIIPAPFWVSYPEMARIA-DATPVILPTRISENFLLDPKVLESKLTEKSR----LLIL 234
D V++P W +Y A V P E+ D L+ L ++IL
Sbjct: 94 DTVLLPDHNWGNYKLTFNTRRGAEIVTYPI-FDEDGGFDTDALKEALQAAYNKGKVIVIL 152
Query: 235 CSPSNPTGSVYPKNLLDEIARIV----AKHPRLLVLSDEIYEHIIYAPATHTS-FASLPG 289
P+NPTG + I + +++ + D+ Y + Y + S FA+L
Sbjct: 153 NFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALAN 212
Query: 290 MWERTLTV--NGFSKAFAMTGWRLGYI 314
+ L V +G +K + G+R+G+I
Sbjct: 213 LHSNILAVKLDGATKEEFVWGFRVGFI 239
|
Length = 388 |
| >gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 7e-07
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
I +P+ PTG P L EI RI+A +P +V+ DE Y + + S L +
Sbjct: 149 IFPNPNAPTGIALP---LAEIERILAANPDSVVVIDEAY--VDFGGE---SAIPLIDRYP 200
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAAL 347
L V FSK+ ++ G R+G+ G + A N++++ F S ++Q +AA+
Sbjct: 201 NLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAI 256
|
Length = 353 |
| >gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 12/195 (6%)
Query: 75 VKPSKTVAITDQAT-ALAQAGVSVIRLAAGEP----DFDTPVLIAEAGINA-IREGFTRY 128
+ SK + + A AL +A +SV + D D L + + A I E F R
Sbjct: 668 EESSKFIGFSSSARSALKEAELSV-SGSQESSLIHMDVDESFLPVPSAVKASIFESFVRQ 726
Query: 129 TPNAGTLELRSAICHKLKEENGL--SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
+ + R +I +K G + + + + + VL G + PA
Sbjct: 727 NISESETDPRPSILQFIKSNYGFPTDSC-TEFVYGDTSLALFNKLVLCCVQEGGTLCFPA 785
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS-PS-NPTGSV 244
+Y A+ A +PT+ S+ F L K L S L + + S P+ NPTG +
Sbjct: 786 GSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLL 845
Query: 245 YPKNLLDEIARIVAK 259
Y + ++EI + AK
Sbjct: 846 YSNSEIEEILSVCAK 860
|
Length = 1082 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 23/168 (13%)
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENF 214
D+ + + A+LA+ PGDEVI+ A S Y A +A A PV +P +
Sbjct: 18 DKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYG 77
Query: 215 LLDPKVLE-SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
LD +LE K L+++ + G + P L EI +I ++ +L+L D
Sbjct: 78 GLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVD----- 128
Query: 274 IIYAPATHTSFAS----LPGMWERTLTVN-GFSKAFAMTGWRLGYIAG 316
A AS + V K + G G +
Sbjct: 129 -----AASAGGASPAPGVLIPEGGADVVTFSLHK--NLGGEGGGVVIV 169
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 9/158 (5%)
Query: 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217
IL NG +SI AV++ P +I+ P + Y + R ++ + L
Sbjct: 75 ILAGNGETESIF-AVVSGLKPRRAMIV-TPGFAEYRRALQQVGCEIRRYSLREADGWQLT 132
Query: 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+LE+ LT L LC+P+NPTG + + LL IA L+L + + I
Sbjct: 133 DAILEA-LTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDE 191
Query: 278 PATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYI 314
A P +W R+LT K +A+ G RLGY+
Sbjct: 192 TGFIPQLADNPHLWVLRSLT-----KFYAIPGLRLGYL 224
|
Length = 356 |
| >gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 18/116 (15%)
Query: 158 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ VS+G + L L PGDEVI+P+ +V+ + ATPV I P +
Sbjct: 37 VAVSSGT--AALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDIDP----D 90
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ +DP+++E+ +T +++ +I P + G+ +D I I +H L V+ D
Sbjct: 91 TYNIDPELIEAAITPRTKAII---PVHLYGNPAD---MDAIMAIAKRH-GLPVIED 139
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 178 PGDEVII-PAPF-WVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
PGDE+++ P E+A+ A ++P + ++ LLD LE +T K++L+
Sbjct: 110 PGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIP--LDDDGLLDLDALEKLITPKTKLVA 167
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKH 260
L SN TG+V P + EIA + +H
Sbjct: 168 LSHVSNVTGTVNP---VKEIAELAHEH 191
|
Length = 405 |
| >gnl|CDD|178069 PLN02450, PLN02450, 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 51/205 (24%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPV-I 205
N +++ P++++++ GA + + + PGD ++P P+ YP R + T V I
Sbjct: 104 GNKVTFDPNKLVLTAGATSANETLMFCLAEPGDAFLLPTPY---YPGFDRDLKWRTGVEI 160
Query: 206 LPT--------RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE-IARI 256
+P +I+E+ L + KL K + +++ +PSNP G+ + L+ + I
Sbjct: 161 VPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFI 220
Query: 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASL-----------PGMWERTLTVNGFSKAFA 305
AK+ L+ SDEIY ++ F S+ + R V SK
Sbjct: 221 TAKNIHLI--SDEIYSGTVFD---SPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLG 275
Query: 306 MTGWRLGYI-AGPKHFVAACNKIQS 329
+ G+R+G I + + V+A K+ S
Sbjct: 276 LPGFRVGAIYSNDEMVVSAATKMSS 300
|
Length = 468 |
| >gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 30/169 (17%)
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIA--DATPVILPTRI 210
TPD++L+ GA + A+LA P ++ F + PE A R A V+L
Sbjct: 74 TPDEVLLLAGAAEGF--ALLARLRPRRAAVVHPSF--TEPEAALRAAGIPVHRVVLD--- 126
Query: 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270
F LDP + + + + L+++ +P+NPT ++P L + R R+LV+ DE
Sbjct: 127 -PPFRLDP----AAVPDDADLVVIGNPTNPTSVLHPAEQLLALRR----PGRILVV-DEA 176
Query: 271 YEHIIYAPATHTSFA--SLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAG 316
+ + P S A LPG+ R+LT K +++ G R+GY G
Sbjct: 177 FADAV--PGEPESLAGDDLPGVLVLRSLT-----KTWSLAGLRVGYALG 218
|
Length = 349 |
| >gnl|CDD|216261 pfam01041, DegT_DnrJ_EryC1, DegT/DnrJ/EryC1/StrS aminotransferase family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 3e-04
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 158 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ VS+G S L L PGDEVI+PA +V+ ATPV + P +
Sbjct: 43 LAVSSGT--SALHLALRALGIGPGDEVIVPAFTFVATANAVLQLGATPVFVDVDP----D 96
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVL 266
+ +DP +E+ +T +++ ++ P +L +D I I A+H L V+
Sbjct: 97 TYNIDPAAIEAAITPRTKAIM------------PVHLYGQPADMDAIRAIAAEH-GLPVI 143
Query: 267 SD 268
D
Sbjct: 144 ED 145
|
The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA, StsC and StsS. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase EC:2.6.1.50, which catalyzes the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin. Length = 362 |
| >gnl|CDD|102370 PRK06425, PRK06425, histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
LP + N +P++L + L+ + SP NP G++ ++ L I+ I K LL
Sbjct: 106 LPFNLINN---NPEILNNY---NFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLF 159
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319
+ DE + I + P L + + +K + R+GYIA +
Sbjct: 160 I-DEAF--IDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDY 210
|
Length = 332 |
| >gnl|CDD|185378 PRK15481, PRK15481, transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 50/234 (21%), Positives = 88/234 (37%), Gaps = 52/234 (22%)
Query: 91 AQAGVSVIRLAAGEPD--------------FDTPVLIAEAGINA-----IREGFTRYTPN 131
G + LA G PD TP L +A ++ P
Sbjct: 81 GDPGTPLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPV 140
Query: 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS 191
A ++L ++GA +I + + A PGD V + P ++S
Sbjct: 141 AFEIDL-----------------------TSGAIDAIERLLCAHLLPGDSVAVEDPCFLS 177
Query: 192 YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS--NPTGSVYPKNL 249
M R A + + +E + P+ LE L + +R +IL +P NPTG
Sbjct: 178 SINMLRYAGFSASPVSVD-AEG--MQPEKLERALAQGARAVIL-TPRAHNPTGCSLSARR 233
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
+ ++A++P++LV+ D+ + + +P +P +R + SKA
Sbjct: 234 AAALRNLLARYPQVLVIIDDHFALLSSSPYHSV----IPQTTQRWALIRSVSKA 283
|
Length = 431 |
| >gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 158 ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ VS+G + L L + PGDEVI+P+ +V+ + A PV I P +
Sbjct: 53 VAVSSGT--AALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDP----D 106
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+DP ++E+ +T +++ +I P + G +D I + +H L V+ D
Sbjct: 107 TLNIDPDLIEAAITPRTKAII---PVHLAGQPCD---MDAIMALAKRH-GLPVIED 155
|
Length = 374 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 18/121 (14%)
Query: 155 PDQILVSNGAKQSI---LQAVLAVCSPGDEVII-----PAPF--WVSYPEMARIADATPV 204
++I+ ++G ++I ++ PGDE+++ A W E+A+ AT
Sbjct: 61 DEEIIFTSGTTEAINLVAISLGRSLKPGDEILVTEMEHHANLVPWQ---ELAKRTGATVR 117
Query: 205 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264
++P + N LLD LE LT +++L+ + SN TG+V P ++EI ++ ++ L+
Sbjct: 118 VIP--VDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNP---VEEIGKLAHEYGALV 172
Query: 265 V 265
V
Sbjct: 173 V 173
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|99739 cd00615, Orn_deC_like, Ornithine decarboxylase family | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 159 LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL-- 215
+ NG S +LAVC PGD+++I S ++ A PV L P R +
Sbjct: 79 FLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGIAG 138
Query: 216 -LDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
+ P+ + L E ++ ++ +P G Y L +I A H L VL DE
Sbjct: 139 GIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVE-EAHHRGLPVLVDE 190
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. Length = 294 |
| >gnl|CDD|224893 COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 29/152 (19%)
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI--ADATPVILPTRISENFLL- 216
V NG + + AV +PGD+V++ + A ATPV L + + +
Sbjct: 91 VVNGTSTANKAVINAVLTPGDKVLVDRN--CHKSIHHGLILAGATPVYLEPSRNPLYGII 148
Query: 217 ---DPKVLESKLTEK---SRLLILCSPSNPT--GSVY-PKNLLDEIARIVAK------HP 261
+ + L +L ++ +NPT G Y + +++ + A HP
Sbjct: 149 GGIPLETFKEALLAHPDAEKLAVI---TNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHP 205
Query: 262 RLLVLSDEIYEH------IIYAPATHTSFASL 287
S + E +TH A+L
Sbjct: 206 AHFDFSPMLPESALNGGADFVTQSTHKLLAAL 237
|
Length = 557 |
| >gnl|CDD|183263 PRK11658, PRK11658, UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 163 GAKQSILQAVLAVCS---------------PGDEVIIPAPFWVSYPEMARIADATPVILP 207
G + +I AV S PGDEVI P+ WVS M + ATPV++
Sbjct: 47 GNQHAI-----AVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVD 101
Query: 208 TRISENFLLDPKVLESKLTEKSRLLI 233
+ ++ P+ +E+ +T +++ +I
Sbjct: 102 VD-RDTLMVTPEAIEAAITPRTKAII 126
|
Length = 379 |
| >gnl|CDD|201705 pfam01276, OKR_DC_1, Orn/Lys/Arg decarboxylase, major domain | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 36/138 (26%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL-PTRISENFL--- 215
V NG + +AVC+PGD V+I S ++ ATPV L PTR + +
Sbjct: 87 VVNGTSGANKTVGMAVCTPGDTVLIDRNCHKSIHHALMMSGATPVYLEPTRNAYGIIGGI 146
Query: 216 ----LDPKVLESKLTE--KSRLLILCSPSNPT--GSVYPKNLLDEIARIVAKHPRLLVLS 267
+ ++ L E ++ L +N T G++Y EI H +L
Sbjct: 147 PLHEFQEETIKEALAEVPPAKGPRLAVITNGTYDGTIYN---AKEIVDT-LGHLSDYILF 202
Query: 268 DE---IYEHIIYAPATHT 282
D YE I A +
Sbjct: 203 DSAWVGYEQFIPIYADAS 220
|
Length = 417 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 100.0 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 100.0 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 100.0 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 100.0 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 100.0 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 100.0 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 100.0 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 100.0 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 100.0 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 100.0 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 100.0 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 100.0 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 100.0 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 100.0 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 100.0 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 100.0 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 100.0 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 100.0 | |
| PLN02822 | 481 | serine palmitoyltransferase | 100.0 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 100.0 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 100.0 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.98 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.98 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.97 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.97 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.97 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.96 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.96 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.96 | |
| PLN02721 | 353 | threonine aldolase | 99.96 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.96 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.96 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.96 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.96 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.96 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.96 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.96 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.96 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.95 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.95 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.95 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.95 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.95 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.95 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.95 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.95 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.95 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.95 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.95 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.95 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.94 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.94 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.94 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.94 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.94 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.94 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.94 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.94 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.93 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.93 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.93 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.93 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.93 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.93 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.93 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.93 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.93 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.93 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.93 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.93 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.93 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.93 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.93 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.93 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.93 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.92 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.92 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.92 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.92 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.92 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.92 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.92 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.92 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.92 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.92 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.92 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.92 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.92 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.91 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.91 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.91 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.91 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.91 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.91 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.91 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.91 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.91 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.91 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.91 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.9 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.9 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.9 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.9 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.9 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.9 | |
| PLN02651 | 364 | cysteine desulfurase | 99.9 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.89 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.89 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.89 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.89 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.89 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.88 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.88 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.88 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.88 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.88 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.88 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.88 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.88 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.88 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.88 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.88 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.87 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.87 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.87 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.87 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.87 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.86 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.86 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.86 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.86 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.86 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.85 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.85 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.84 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.84 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.84 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.84 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.83 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.83 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.83 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.83 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.83 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.82 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.82 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.82 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.82 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.82 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.81 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.8 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.8 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.79 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.79 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.79 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.78 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.78 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.78 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.78 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.78 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 99.77 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.76 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.76 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 99.76 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.75 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.75 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.75 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.75 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.74 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.74 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.73 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.73 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.73 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.73 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.72 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.71 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.71 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.7 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.7 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.7 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.69 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.68 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.68 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 99.68 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.67 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.67 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.67 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.67 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.67 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.66 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.65 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.65 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.64 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 99.64 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.62 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.62 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.62 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.62 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.62 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.61 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 99.6 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.6 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.59 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.59 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.59 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.59 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.59 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.58 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.58 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.57 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.57 | |
| PLN02263 | 470 | serine decarboxylase | 99.57 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.56 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.56 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.55 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.55 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.54 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.53 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.53 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.52 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.52 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.52 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.52 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.52 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.52 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.51 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.51 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.51 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.5 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.5 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.5 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.49 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.49 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.49 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.49 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.48 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.48 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.46 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.46 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.46 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.46 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.45 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.45 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.44 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.43 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.43 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.42 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.42 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.41 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.39 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.39 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.39 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.37 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.37 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.36 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.34 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.32 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.31 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.3 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.3 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.29 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 99.29 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.28 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.24 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.24 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.24 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.23 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.21 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.19 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.1 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.1 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.05 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.02 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.01 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.0 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.94 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.89 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 98.85 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 98.84 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 98.72 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 98.49 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 98.38 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 98.04 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.77 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 97.73 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.66 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 97.62 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 97.42 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 96.83 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.62 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 96.45 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 88.58 | |
| COG2102 | 223 | Predicted ATPases of PP-loop superfamily [General | 87.09 |
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=489.31 Aligned_cols=341 Identities=43% Similarity=0.714 Sum_probs=308.0
Q ss_pred cCCchhHHHHHHHHHHHhcC--CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC
Q 014172 75 VKPSKTVAITDQATALAQAG--VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 152 (429)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g--~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~ 152 (429)
..++....+...+.+..+.. .++|+|++|+|++++|+.+.+++.+++.++...|++..|.++||++|++++.+.+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~ 85 (393)
T COG0436 6 VLPSYTFAVLAEAKAAAELKGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLD 85 (393)
T ss_pred cCcchhHHHHhHHHHHHHhcCCCCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34444445555333333332 4699999999999999999999999988754378899999999999999999999998
Q ss_pred CCCCc-EEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhcccCCc
Q 014172 153 YTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKSR 230 (429)
Q Consensus 153 ~~~~~-i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~~~~~ 230 (429)
+++++ |++|+|+++++.+++.++++|||+|++++|.|+.|...++.+|++++.++++.+ ++|.+|+++|++++++++|
T Consensus 86 ~~~~~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk 165 (393)
T COG0436 86 VDPEEEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTK 165 (393)
T ss_pred CCCCCeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccce
Confidence 88876 999999999999999999999999999999999999999999999999998665 4899999999999999999
Q ss_pred EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccce
Q 014172 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (429)
Q Consensus 231 ~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 310 (429)
+|++++||||||++++++++++|+++|++| |++||+||+|.++.|++..+.++.++....+++|+++||||.|+|+|||
T Consensus 166 ~i~ln~P~NPTGav~~~~~l~~i~~~a~~~-~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwR 244 (393)
T COG0436 166 AIILNSPNNPTGAVYSKEELKAIVELAREH-DIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWR 244 (393)
T ss_pred EEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccc
Confidence 999999999999999999999999999999 9999999999999999876778888776578999999999999999999
Q ss_pred eeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCc
Q 014172 311 LGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQG 388 (429)
Q Consensus 311 ~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~ 388 (429)
+||++++ +++++.+.+++....+|++.++|.++.++|+.... ..+++.+++.|++||+.+.+.|.+++|+.+.. |+|
T Consensus 245 vG~~v~~~~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~-~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~G 323 (393)
T COG0436 245 IGWVVGPPEELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS-DEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEG 323 (393)
T ss_pred eeEeecChHHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCe
Confidence 9999999 88999999999999999999999999999997322 45788888999999999999999998899988 899
Q ss_pred eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+||+|++++.. .++.+|+.+|++++||+|
T Consensus 324 a~Y~~~~i~~~-----------~d~~~f~~~Ll~~~gV~v 352 (393)
T COG0436 324 AFYLFPKIPEL-----------LDSEEFAKKLLEEAGVAV 352 (393)
T ss_pred eEEEEeecCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 99999999864 389999999999999987
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-59 Score=437.35 Aligned_cols=354 Identities=38% Similarity=0.639 Sum_probs=312.9
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEE-cCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIR-LAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~-L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l 145 (429)
.+.++...+++.+.++..++.+.. ..+ |+.|.|++++|+.+.+++.+++... .++|++..|.++|+++|++.+
T Consensus 8 ~~~~l~~~~~~vw~e~~~la~e~~-----~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~ 82 (420)
T KOG0257|consen 8 RNRNLSTSKPYVWTEINRLAAEHK-----VPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAY 82 (420)
T ss_pred ccccccccCCcHHHHHHHHHHhcC-----CCCcccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHH
Confidence 355666667777777766665432 233 9999999999999999999998774 789999999999999999999
Q ss_pred HhhcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC------CCCCCCCCH
Q 014172 146 KEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR------ISENFLLDP 218 (429)
Q Consensus 146 ~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~------~~~~~~~d~ 218 (429)
+..+|....+ ++|+||.|+.++|..++++++++||+|++.+|+|..|....+++|++++.+++. ..++|.+|.
T Consensus 83 se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~ 162 (420)
T KOG0257|consen 83 SEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDP 162 (420)
T ss_pred HHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCCh
Confidence 9988877666 579999999999999999999999999999999999999999999999999998 456799999
Q ss_pred HHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEe
Q 014172 219 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (429)
Q Consensus 219 e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (429)
++++.+++++||+|++|+||||||.++++++|++|+++|++| |++||+||+|..++|++..+..+.+++++++++|.++
T Consensus 163 ~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~-~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvg 241 (420)
T KOG0257|consen 163 EELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKH-GLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVG 241 (420)
T ss_pred HHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEec
Confidence 999999999999999999999999999999999999999999 9999999999999999998999999999999999999
Q ss_pred ccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHHH
Q 014172 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAG-----GEVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 299 S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~-----~~~~~~~~~~~~~~r~~l~~ 373 (429)
||||+||++|||+||+++++.++..+..+........+++.|.|..+++..+..+ ..++.++.+.|+++|+.+.+
T Consensus 242 S~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k 321 (420)
T KOG0257|consen 242 SFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAK 321 (420)
T ss_pred cccceeeeeeeeeeeeechHHhhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988864310 14566699999999999999
Q ss_pred HhccCCCceeecCCceEEEEEecCCc-cCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 374 SFGELEGVKMSEPQGAFYLFIDFSTY-YGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 374 ~L~~l~g~~~~~p~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|+++ |+++..|+|++|+|++++.. ..+..++.....++..++..|+++.||++
T Consensus 322 ~L~~l-g~~v~~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~ 376 (420)
T KOG0257|consen 322 ALEEL-GLKVTGPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVV 376 (420)
T ss_pred HHHhc-CCccccCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEE
Confidence 99999 99999999999999999821 11222333333467789999999999874
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=431.46 Aligned_cols=347 Identities=21% Similarity=0.366 Sum_probs=302.6
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
+++++..++.+.+..+....+..+..|.++|+|+.|+|++++|+.+.+++.+.+... ..+|++..|.++||++|++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~ 82 (388)
T PRK07366 3 FAQRLQPLQSNVFADMDRAKAQARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYE 82 (388)
T ss_pred hhhhhhcCCccHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHH
Confidence 567777777777767767777777788899999999999999999999999887543 4679888999999999999999
Q ss_pred hhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 147 EENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 147 ~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
+.+|+.++++ +|++|+|+++++.+++++++++||+|++++|+|+.|...++..|++++.+|++.++++.+|++++++.+
T Consensus 83 ~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 162 (388)
T PRK07366 83 QRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEV 162 (388)
T ss_pred HhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhh
Confidence 9999888998 799999999999999999999999999999999999999999999999999987777889999998888
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCC-CCccccCCCCCCceEEEeccChhc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
.+++|++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++.. .+++.+++...+++|+++||||.|
T Consensus 163 ~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~ 241 (388)
T PRK07366 163 LAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQH-DLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY 241 (388)
T ss_pred cccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc
Confidence 77899999999999999999999999999999999 9999999999999987643 455666655456789999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
|++|+|+||+++++++++.+.+.......+.....+.++.+++.. .++++++.++.|+++|+.+.+.|+++ |+.+.
T Consensus 242 g~~GlRiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~---~~~~l~~~~~~~~~~r~~l~~~L~~~-~~~~~ 317 (388)
T PRK07366 242 NMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTG---PQATVQQTVQIFRQRRDAFINALHQI-GWPVP 317 (388)
T ss_pred CCcchhheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 999999999999999999999887766666545555666666654 37899999999999999999999988 88878
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|++|+|+|++++..+. .++.+++++|++++||.|
T Consensus 318 ~p~~g~f~~~~~~~~~~---------~~~~~~~~~l~~~~gv~v 352 (388)
T PRK07366 318 LPEATMYVWAKLPEPWQ---------GNSVEFCTQLVAQTGVAA 352 (388)
T ss_pred CCCeeEEEEEECCcccC---------CCHHHHHHHHHHhCCEEE
Confidence 89999999999985311 247889999988889976
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-54 Score=428.50 Aligned_cols=345 Identities=25% Similarity=0.453 Sum_probs=307.4
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l 145 (429)
++++++..+.++.+.++...+.+.+..+.++|+|+.|+|++++|+.+.+++.+.+... ...|. ..|..+||++|++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~ 82 (399)
T PRK07681 4 TLATRMKAFQSSIFSELGAYKKEKIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYT-LSGIQEFHEAVTEYY 82 (399)
T ss_pred cHhHHHhhcCccHHHHHHHHHHHhhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHH
Confidence 4577888788888888777777766677889999999999988999999998877542 34453 579999999999999
Q ss_pred HhhcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh
Q 014172 146 KEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (429)
Q Consensus 146 ~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 224 (429)
.+.+|+.+++ ++|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.+|++++++|.+|++.+++.
T Consensus 83 ~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~ 162 (399)
T PRK07681 83 NNTHNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEE 162 (399)
T ss_pred HHHhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHh
Confidence 9999998998 899999999999999999999999999999999999999999999999999998777788999999999
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
+.+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.+++...+++|+++||||.|
T Consensus 163 ~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 241 (399)
T PRK07681 163 IADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKH-NIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY 241 (399)
T ss_pred ccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc
Confidence 888899999999999999999999999999999999 9999999999999987655556666655567899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
|++|+|+||+++++++++.+.........+++.+.|.++..+|.. ..+++++.++.|+++++.+.+.|+++ |+++.
T Consensus 242 ~~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 317 (399)
T PRK07681 242 SLAGSRIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRN---GAAFCEKNRGIYQERRDTLVDGFRTF-GWNVD 317 (399)
T ss_pred CCccceeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 999999999999999999998887766678999999999999987 45789999999999999999999998 88888
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|++|+|+|++++.. .++.+++.+|++++||.|
T Consensus 318 ~p~~g~f~~~~l~~~-----------~~~~~~~~~l~~~~gv~v 350 (399)
T PRK07681 318 KPAGSMFVWAEIPKG-----------WTSLSFAYALMDRANVVV 350 (399)
T ss_pred CCCeeeEEEEECCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 899999999999753 367899999999789976
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-54 Score=428.42 Aligned_cols=341 Identities=31% Similarity=0.610 Sum_probs=304.6
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.+++++..+..+.+..+.+.+. +.++|+|+.|.|++++|+.+.+++.+.+.++..+|++..|.++||+++++++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~ 105 (413)
T PLN00175 31 QVAKRLEKFKTTIFTQMSSLAI-----KHGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFK 105 (413)
T ss_pred chhHHhhcCCCCHHHHHHHHhh-----cCCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHH
Confidence 4678888888887766655442 24699999999999999999999999887666789999999999999999999
Q ss_pred hhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 147 EENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 147 ~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
+.+|++++++ +|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.+++++++ +.+|++.|++.+
T Consensus 106 ~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~~~~l~~~~ 184 (413)
T PLN00175 106 KDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPD-FAVPEDELKAAF 184 (413)
T ss_pred HHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCccc-CCCCHHHHHHhc
Confidence 9999888887 79999999999999999999999999999999999999999999999999987544 789999999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
.+++|+|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++ .+.++.++++..+++|+++||||.|+
T Consensus 185 ~~~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~l~~~~-~~~s~~~~~~~~~~vi~i~SfSK~~~ 262 (413)
T PLN00175 185 TSKTRAILINTPHNPTGKMFTREELELIASLCKEN-DVLAFTDEVYDKLAFEG-DHISMASLPGMYERTVTMNSLGKTFS 262 (413)
T ss_pred CcCceEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEecccCccccCC-cccChhhCCCCcCcEEEEecchhhcc
Confidence 88999999999999999999999999999999999 99999999999999865 34466666665689999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
++|||+||+++++++++.+.........+++.+.|.++..+|+. .+.++++.++.|+++|+.+.+.|++. |+++..
T Consensus 263 ~~G~RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 338 (413)
T PLN00175 263 LTGWKIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRA---PESYYEELKRDYSAKKDILVEGLKEV-GFKVYP 338 (413)
T ss_pred CcchheeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecC
Confidence 99999999999999999998888777788999999999999986 46789999999999999999999998 899999
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+||||+|++++.. + ..++.+|+++|++++||.+
T Consensus 339 p~g~~f~~~~~~~~-~--------~~~~~~~~~~ll~~~gV~v 372 (413)
T PLN00175 339 SSGTYFVMVDHTPF-G--------FENDIAFCEYLIEEVGVAA 372 (413)
T ss_pred CCeeEEEEEecccc-C--------CCCHHHHHHHHHHhCCEEE
Confidence 99999999998531 0 1257899999998889975
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=423.23 Aligned_cols=346 Identities=26% Similarity=0.431 Sum_probs=305.2
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l 145 (429)
.+++++....++.+..+...+.+....++++|+|+.|+|++++++.+.+++.+.+... ..+|+|..|.++||+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~ 83 (389)
T PRK08068 4 EPSELLKQLPKQFFASLVAKVNKKVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFY 83 (389)
T ss_pred chhhHhhhcCccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 4667777778887777777777666677789999999999888888999998887643 467988999999999999999
Q ss_pred HhhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh
Q 014172 146 KEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (429)
Q Consensus 146 ~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 224 (429)
.+.+|..++++ +|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.+|++.++++.+|++++++.
T Consensus 84 ~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~ 163 (389)
T PRK08068 84 KREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEE 163 (389)
T ss_pred HHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHh
Confidence 98889888888 89999999999999999999999999999999999999999999999999997666788999999999
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
+.+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++....+..+++++++||||.|
T Consensus 164 ~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~-~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~ 242 (389)
T PRK08068 164 VAEKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKH-NIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF 242 (389)
T ss_pred ccccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc
Confidence 988899999999999999999999999999999999 9999999999998887544445444444457899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
|++|+|+||+++++++++.+.+....+..+.+.+.|.++..++.. ..++++.+++.|+++|+.+.+.|+++ |+.+.
T Consensus 243 g~~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~ 318 (389)
T PRK08068 243 NMAGWRVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLS---DQSCVAELVARYESRRNAFISACREI-GWEVD 318 (389)
T ss_pred CCccceeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCccc
Confidence 999999999999999999998887776666777788888888865 46889999999999999999999998 88888
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+||||+|++++.. .++.+++++|++++||.|
T Consensus 319 ~~~g~~~~~v~~~~~-----------~~~~~~~~~l~~~~gi~v 351 (389)
T PRK08068 319 APKGSFFAWMPVPKG-----------YTSEQFADLLLEKAHVAV 351 (389)
T ss_pred CCCeeEEEEEECCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 999999999999853 368899999998889986
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=420.80 Aligned_cols=346 Identities=31% Similarity=0.540 Sum_probs=309.2
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l 145 (429)
++++++..+.++....+...++++...++++|+|+.|+|++++|+.+.+++.+.+.. ....|++..|.++||+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~ 82 (385)
T PRK09276 3 KLADRIKNLPPYLFAEIDKKKAEKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWY 82 (385)
T ss_pred chhhHhhhCCccHHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHH
Confidence 356777788888777777778888778889999999999999899999999988754 3467988889999999999999
Q ss_pred HhhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh
Q 014172 146 KEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (429)
Q Consensus 146 ~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 224 (429)
++.+|.+++++ +|++|+|+++++..++..++++||+|++++|+|+.|...++..|++++.++++.++++.+|++++++.
T Consensus 83 ~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~ 162 (385)
T PRK09276 83 KRRFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPED 162 (385)
T ss_pred HHHhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHh
Confidence 98889888887 59999999999999999999999999999999999999999999999999997666788999999998
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
+.+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..++...+++|+++||||.|
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 241 (385)
T PRK09276 163 VAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKY-DIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY 241 (385)
T ss_pred ccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhc
Confidence 888899999999999999999999999999999999 9999999999999887655666666655457889999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
|++|+|+||+++++++++.+.+.......+.+.+.|.++..+|.. .+.|++++++.++++|+.+.+.|+++ |+++.
T Consensus 242 g~~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~ 317 (385)
T PRK09276 242 NMTGWRIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNG---PQEVVEELRKIYQERRDILVEGLRKL-GLEVE 317 (385)
T ss_pred CCcchhheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcC---cHHHHHHHHHHHHHHHHHHHHHHHhC-CCccc
Confidence 999999999999999999998887766677888899999999975 47889999999999999999999998 88888
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|++|||+|++++.. .++.+++++|++++||.|
T Consensus 318 ~~~~~~~~~v~~~~~-----------~~~~~l~~~ll~~~gi~v 350 (385)
T PRK09276 318 PPKATFYVWAPVPKG-----------YTSAEFATLLLDKAGVVV 350 (385)
T ss_pred CCCcceEEEEECCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 899999999999853 368899999998889976
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-53 Score=419.16 Aligned_cols=344 Identities=28% Similarity=0.503 Sum_probs=305.5
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++..+..+.+..+.+.+.+.+..|+++++|+.|+|++++|+.+.+++.+.+.. ...+|++..|.++||+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 82 (383)
T TIGR03540 3 ADRIENLPPYLFAEIDKKKAEKKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKR 82 (383)
T ss_pred chhhccCChhHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4556666666666677777777778889999999999999899999999987754 357899889999999999999998
Q ss_pred hcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+|.+++++ +|++|+|+++++..++++++++||.|++++|+|+.|...++..|++++.+|++.++++.+|++++++.+.
T Consensus 83 ~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~ 162 (383)
T TIGR03540 83 RFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA 162 (383)
T ss_pred hhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc
Confidence 889877776 6999999999999999999999999999999999999999999999999999877778889999999988
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..+....+++|+++||||.||+
T Consensus 163 ~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~ 241 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEY-NIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNM 241 (383)
T ss_pred ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHc-CEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCC
Confidence 8999999999999999999999999999999999 999999999999988765566666665445788999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.........+++.+.|.++..++.. ..+|++++++.++++++.+.+.|+++ |+.+..|
T Consensus 242 ~GlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~ 317 (383)
T TIGR03540 242 TGWRIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNG---PQDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKP 317 (383)
T ss_pred ccceeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCC
Confidence 9999999999999999998877766677888999999999986 47889999999999999999999998 8999899
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|++++.. .++.+|+++|++++||.|
T Consensus 318 ~~~~~~~~~l~~~-----------~~~~~~~~~ll~~~gi~v 348 (383)
T TIGR03540 318 KATFYVWVPVPEG-----------YTSAEFAARLLEETGVVV 348 (383)
T ss_pred CcceEEEEECCCC-----------CCHHHHHHHHHHHCCEEE
Confidence 9999999999753 368899999998889976
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=420.05 Aligned_cols=347 Identities=26% Similarity=0.477 Sum_probs=305.5
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHK 144 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~ 144 (429)
+.+++++.++.++.+..+.+.+.+.+..|+++|+|+.|+|+.++|+.+.+++.+.+... ...|++..|.++||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~ 85 (394)
T PRK05942 6 ITPADRLQALPPYVFARLDELKARAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDW 85 (394)
T ss_pred cchhhhhccCCCcHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHH
Confidence 34677787878776666666676777788889999999999877777888877776533 46899889999999999999
Q ss_pred HHhhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh
Q 014172 145 LKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 145 l~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
+++.+|.+++++ +|++|+|+++++..++.+++++||+|++++|+|+.+...+...|++++.++++.+++|.+|++++++
T Consensus 86 ~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 165 (394)
T PRK05942 86 YHRRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPE 165 (394)
T ss_pred HHHHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHH
Confidence 999889888887 5999999999999999999999999999999999999999999999999999876778899999999
Q ss_pred hcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 224 ~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
.+.+++|+|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.+++...+++|+++||||.
T Consensus 166 ~~~~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~ 244 (394)
T PRK05942 166 EVAQQAKILYFNYPSNPTTATAPREFFEEIVAFARKY-EIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKT 244 (394)
T ss_pred hccccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhc
Confidence 9988999999999999999999999999999999999 999999999999988765555666665445678999999999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
||++|+|+||+++++++++.+.........+++.++|.++..+|+. .++++++.++.|+++++++.+.|+++ |+.+
T Consensus 245 ~~~~GlRiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~ 320 (394)
T PRK05942 245 YNMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQL---PDSYLQQVQERYRTRRDFLIQGLGEL-GWNI 320 (394)
T ss_pred cCChhhheeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCee
Confidence 9999999999999999999999887766667889999999999975 47789999999999999999999987 8888
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+|++|+|+|++++.. .++.+++.++++++||.|
T Consensus 321 ~~~~~~~f~~~~~~~~-----------~~~~~~~~~~l~~~gV~v 354 (394)
T PRK05942 321 PPTKATMYLWVPCPVG-----------MGSTDFALNVLQKTGVVV 354 (394)
T ss_pred cCCCeeeEEEEECCCC-----------CCHHHHHHHHHHHCCEEE
Confidence 8899999999999853 267889998998889986
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-54 Score=425.48 Aligned_cols=329 Identities=23% Similarity=0.353 Sum_probs=282.4
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCC--------CC----------------------ChHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD--------FD----------------------TPVLIAEA 116 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~--------~~----------------------~p~~v~~a 116 (429)
.+++++..++.+.+..+..++.++++.|.++|+|++|+|+ +. +|+.+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a 89 (407)
T PLN02368 10 SLNENVKKCQYAVRGELYLRASELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARA 89 (407)
T ss_pred hcCHHHHhhhhhcCCHHHHHHHHHHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHH
Confidence 4788899999998888889999998899999999999997 31 45566666
Q ss_pred HHHHHH--cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCCCChH
Q 014172 117 GINAIR--EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYP 193 (429)
Q Consensus 117 ~~~~~~--~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-~~gd~Vlv~~p~y~~~~ 193 (429)
+..... .+..+|++..|.++||++|++++.+.+|+.+++++|++|+|+++++..++.+++ ++||+|++++|+|+.|.
T Consensus 90 ~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y~ 169 (407)
T PLN02368 90 KHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLYS 169 (407)
T ss_pred HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccHH
Confidence 544221 235789999999999999999999988988999999999999999999999997 79999999999999999
Q ss_pred HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEE
Q 014172 194 EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267 (429)
Q Consensus 194 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~ 267 (429)
..++..|++++.++++.+++|.+|++.+++.+++ ++|++++++||||||.+++.+++++|+++|++| |++||+
T Consensus 170 ~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~-~~~II~ 248 (407)
T PLN02368 170 ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQE-RLVLLG 248 (407)
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHc-CCEEEE
Confidence 9999999999999998777899999999998864 689999999999999999999999999999999 999999
Q ss_pred ccCCcccccCCC-CCCccccC----CC---CCCceEEEeccChhc-ccccceeeEEE---cCHHHHHHHHHHhhcccCCC
Q 014172 268 DEIYEHIIYAPA-THTSFASL----PG---MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQSQFTSGA 335 (429)
Q Consensus 268 Deay~~~~~~~~-~~~~~~~~----~~---~~~~~i~~~S~SK~~-~~~G~R~G~v~---~~~~~~~~l~~~~~~~~~~~ 335 (429)
||+|.++.|++. .+.++..+ .. ..+++|+++||||.| ||+|||+||++ +++++++.+.+... ...++
T Consensus 249 DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-~~~~~ 327 (407)
T PLN02368 249 DEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-IALSP 327 (407)
T ss_pred EccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-ccCCC
Confidence 999999999764 34454432 11 135899999999999 89999999999 58899999888743 45678
Q ss_pred chHHHHHHHHHHhcCCCC----hHHH---HHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecC
Q 014172 336 SSISQKAGVAALGLGYAG----GEVV---SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~----~~~~---~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~ 397 (429)
+.++|.++.++|+..... ..+. +++++.|++||+++.+.|++++|+.+..|+|+||+|++++
T Consensus 328 ~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~~P~Gafy~~~~i~ 396 (407)
T PLN02368 328 NVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCNFTEGAMYSFPQIK 396 (407)
T ss_pred CcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeCCCCeeeEeccCCC
Confidence 999999999999753100 1233 4578999999999999999999999999999999998775
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-53 Score=434.27 Aligned_cols=353 Identities=25% Similarity=0.413 Sum_probs=299.7
Q ss_pred ccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSA 140 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ 140 (429)
+.+.+|+++.++.++....+...+++++..|.++|+|+.|+| ++++|+.+.+++.+.+.. ..+|++..|..+||++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~~~Y~~~~G~~~lRea 193 (517)
T PRK13355 115 RTFKKSHKLDNVLYDVRGPVVDEANRMEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-TEGYSDSKGLFSARKA 193 (517)
T ss_pred cCCChhHHhhccCccHHHHHHHHHHHHHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCcChHHHHHH
Confidence 346789999999999888888889988888999999999998 577899999999988764 4679999999999999
Q ss_pred HHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHH
Q 014172 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 220 (429)
Q Consensus 141 ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 220 (429)
|++++.+.++..+++++|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.++++++++|.+|+++
T Consensus 194 ia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~ 273 (517)
T PRK13355 194 IMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDD 273 (517)
T ss_pred HHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHH
Confidence 99999887766688999999999999999999999999999999999999999999999999999999877789999999
Q ss_pred HHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEecc
Q 014172 221 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (429)
Q Consensus 221 l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (429)
+++++++++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++..+.. ...+++++||
T Consensus 274 l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~-~~~ii~DE~Y~~~~~~~~~~~s~~~~~~-~~~vi~~~S~ 351 (517)
T PRK13355 274 IRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREH-QLIIFSDEIYDRLVMDGLEHTSIASLAP-DLFCVTFSGL 351 (517)
T ss_pred HHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEehhhhhhcCCCCCcccHHHhCC-CCeEEEEecc
Confidence 9999999999999999999999999999999999999999 9999999999999998765666666543 2357888999
Q ss_pred ChhcccccceeeEEEc--CHHH----HHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 301 SKAFAMTGWRLGYIAG--PKHF----VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 301 SK~~~~~G~R~G~v~~--~~~~----~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
||.|+++|||+||+++ ++++ ++.+... .....+++.++|.++..+|.......+++....+ +.++|+++.+.
T Consensus 352 SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~-~~~~r~~l~~~ 429 (517)
T PRK13355 352 SKSHMIAGYRIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR-VYEQRELVYNA 429 (517)
T ss_pred hhhccCcccceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999995 4543 3444332 3344578899999999999642112456665544 44568999999
Q ss_pred hccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 375 L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|++++|+++.+|+|+||+|++++... -++.++.+++.+|+++.||+|
T Consensus 430 L~~~~g~~~~~p~g~fy~~~~l~~~~-------~~~~~~~~~~~~ll~~~gV~v 476 (517)
T PRK13355 430 LNAIPGISAVKPKAAFYIFPKIDVKK-------FNIHDDEQFALDLLHDKKVLI 476 (517)
T ss_pred HhcCCCcccCCCCeeeEEEeecCccc-------CCCCCHHHHHHHHHHhCCEEE
Confidence 99998999999999999999987420 011357789999998889986
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=416.22 Aligned_cols=342 Identities=32% Similarity=0.577 Sum_probs=299.8
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+++++..+....+.++.+..+ ...++|+|+.|+|++++++.+.+++.+.......+|++..|.++||+++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~ 81 (384)
T PRK06348 6 LAKKYQQMEVNIMAEIATLAK----KFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSK 81 (384)
T ss_pred HHHHHhcCCccHHHHHHHHHH----hcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 466666666665555544432 2346899999999998888888877766655667899999999999999999999
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|+.+++++|++|+|+++++.+++.+++++||+|++++|+|..|...++..|++++.+++.++++|.+|++.+++.+++
T Consensus 82 ~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~ 161 (384)
T PRK06348 82 NYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITS 161 (384)
T ss_pred HhCCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCc
Confidence 99998999999999999999999999999999999999999999999999999999999986666788999999999988
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++ ...++..+....+++|+++||||.+|++
T Consensus 162 ~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~l~ 239 (384)
T PRK06348 162 KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEY-DLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDFAMT 239 (384)
T ss_pred CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhccCCc
Confidence 999999999999999999999999999999999 99999999999998865 3445556654468999999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.........+++.+.|.++..++.. .+++++++++.|+++++.+.+.|++++++++.+|+
T Consensus 240 GlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p~ 316 (384)
T PRK06348 240 GWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKH---RDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPPK 316 (384)
T ss_pred cccceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCC
Confidence 999999999999999998887777778899999999999975 47789999999999999999999988788888999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
||||+|++++.. + .++.+++++|++++||.|
T Consensus 317 gg~~~~~~~~~~-~---------~~~~~l~~~l~~~~gv~v 347 (384)
T PRK06348 317 GSIYAFINIKKT-G---------LSSVEFCEKLLKEAHVLV 347 (384)
T ss_pred eeEEEEEecccC-C---------CCHHHHHHHHHHhCCEEE
Confidence 999999999742 0 268899999998889976
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-52 Score=415.25 Aligned_cols=344 Identities=30% Similarity=0.523 Sum_probs=307.6
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.++++++++.++.+.++...+++....++++|+|+.|+|++++|+.+.+++.+.+..+...|++..|.++||+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 83 (387)
T PRK08960 4 GYSRRSRDIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYA 83 (387)
T ss_pred chhhHHHhCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHH
Confidence 45778888889988898888888877888999999999999999999999999887666789999999999999999999
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+.+|+.+++++|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.++++.+++|.+|++.+++.++
T Consensus 84 ~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 163 (387)
T PRK08960 84 QRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN 163 (387)
T ss_pred HHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC
Confidence 98998899999999999999999999999999999999999999999999999999999999776678899999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++. ..++..+ .+++++++||||.||+
T Consensus 164 ~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~Y~~~~~~~~-~~~~~~~---~~~vi~~~S~SK~~g~ 238 (387)
T PRK08960 164 ADTVGALVASPANPTGTLLSRDELAALSQALRAR-GGHLVVDEIYHGLTYGVD-AASVLEV---DDDAFVLNSFSKYFGM 238 (387)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CCEEEEEccccccccCCC-CCChhhc---cCCEEEEeecccccCC
Confidence 8899999999999999999999999999999999 999999999999888643 3344333 4689999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-ec
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SE 385 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~~ 385 (429)
+|+|+||+++++++++.+.+.......+++.+.|.++..+|... ..+++.+.++.|+++|+.+.+.|+++ |+.+ ..
T Consensus 239 ~GlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 315 (387)
T PRK08960 239 TGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPE--TLAILEARRAEFARRRDFLLPALREL-GFGIAVE 315 (387)
T ss_pred cccEEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCcC
Confidence 99999999999999999988887777788999999999998742 25789999999999999999999987 7664 47
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+||+|+|++++... .++.+|+++|++++||.|
T Consensus 316 p~g~~f~~~~~~~~~----------~~~~~~~~~ll~~~gi~v 348 (387)
T PRK08960 316 PQGAFYLYADISAFG----------GDAFAFCRHFLETEHVAF 348 (387)
T ss_pred CCeeEEEEEeccccC----------CCHHHHHHHHHHhCCEEE
Confidence 999999999998520 267899999998889986
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=416.24 Aligned_cols=339 Identities=25% Similarity=0.422 Sum_probs=295.7
Q ss_pred cccccccCCchhHHHHHHHHHH-HhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKTVAITDQATAL-AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~-~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++.+++++.+..+.+.+.++ ...|+++|+|+.|+|++++|+.+.+++.+.+. ...+|++..|.++||++|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~ 80 (396)
T PRK09147 2 NPRLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLD-GLASYPTTAGLPALREAIAAWLER 80 (396)
T ss_pred cchhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhh-hhcCCCCCCCCHHHHHHHHHHHHH
Confidence 3566777788888888877776 44688999999999999999999999988765 467899899999999999999999
Q ss_pred hcCCC-CCCC-cEEEecChHHHHHHHHHHhcCC---CCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHH
Q 014172 148 ENGLS-YTPD-QILVSNGAKQSILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 222 (429)
Q Consensus 148 ~~g~~-~~~~-~i~~t~G~~~al~~~l~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 222 (429)
.+|++ ++++ +|++|+|+++++.+++++++++ ||.|++++|+|..|...++..|++++.+|++++++|.+|++.++
T Consensus 81 ~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~ 160 (396)
T PRK09147 81 RYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVP 160 (396)
T ss_pred HhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHH
Confidence 89988 8885 8999999999999999999999 89999999999999999999999999999987777899999999
Q ss_pred hhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC-CCCccc----cCC-CCCCceEE
Q 014172 223 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFA----SLP-GMWERTLT 296 (429)
Q Consensus 223 ~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~-~~~~~~----~~~-~~~~~~i~ 296 (429)
+.+.+++|++++|+||||||.+++.+++++|+++|++| +++||+||+|.++.|++. ...+.. .+. ...+++|+
T Consensus 161 ~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 239 (396)
T PRK09147 161 AEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRY-GFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVV 239 (396)
T ss_pred HHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEeeccccccccCCCCCCchhhhhccccCccccccEEE
Confidence 88877899999999999999999999999999999999 999999999999988753 121211 111 12579999
Q ss_pred EeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 014172 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (429)
Q Consensus 297 ~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (429)
++||||.|+++|+|+||+++++++++.+.+.......+++.+.|.++.+++.. .+++.+.++.|+++|+.+.+.|+
T Consensus 240 ~~S~SK~~~~~GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~ 315 (396)
T PRK09147 240 FHSLSKRSNVPGLRSGFVAGDAALLKKFLLYRTYHGCAMPPAVQAASIAAWND----EAHVRENRALYREKFDAVTPILA 315 (396)
T ss_pred EeccccccCCccceeeeecCCHHHHHHHHHHhhhcccCCCHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998777656667889999998888863 67899999999999999999998
Q ss_pred cCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 377 ~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+. +.+..|++|+|+|++++ . ++.+++++|++++||.+
T Consensus 316 ~~--~~~~~p~~g~f~~~~~~-~------------~~~~~~~~ll~~~gv~v 352 (396)
T PRK09147 316 PV--LDVQLPDAGFYLWAKVP-G------------DDTEFARRLYADYNVTV 352 (396)
T ss_pred Hh--cCCCCCCeeEEEEEECC-C------------CHHHHHHHHHHhCCEEE
Confidence 74 56668999999999997 2 57899999998889976
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=427.04 Aligned_cols=359 Identities=21% Similarity=0.348 Sum_probs=296.5
Q ss_pred cCcccccccCCchhHHHHHHHHHHHh---------cCCCeEEcCCCCCC----------------CCCh-----------
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQ---------AGVSVIRLAAGEPD----------------FDTP----------- 110 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~i~L~~g~~~----------------~~~p----------- 110 (429)
.+++++.+++++....+..++++++. +|.++|+|++|+|+ +.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~ 88 (481)
T PTZ00377 9 DINPRVVAAEYAVRGLVPARAAEIKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSL 88 (481)
T ss_pred ccCHHHhhhhhhcCChHHHHHHHHHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCcccccc
Confidence 48999999999988888888888876 55799999999996 7764
Q ss_pred --HHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCEEEE
Q 014172 111 --VLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVII 184 (429)
Q Consensus 111 --~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-~~gd~Vlv 184 (429)
..+++++.+.+.. ....|++..|.++||++|++++.+.+|+++++++|++|+|+++++.+++++++ ++||+|++
T Consensus 89 ~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv 168 (481)
T PTZ00377 89 FPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMI 168 (481)
T ss_pred CCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEE
Confidence 3778877766654 24679999999999999999999999999999999999999999999999998 79999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCCCHHHHHHHHHHHH
Q 014172 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVA 258 (429)
Q Consensus 185 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~ 258 (429)
+.|+|+.|...++..|++++.++++++++|.+|++.+++++++ ++|++++++||||||.+++.+++++|+++|+
T Consensus 169 ~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~ 248 (481)
T PTZ00377 169 PIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCY 248 (481)
T ss_pred CCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998778899999999999874 7899999999999999999999999999999
Q ss_pred hCCCeEEEEccCCcccccCC-CCCCcccc----CCCC---CCceEEEeccChh-cccccceeeEEEc---CHHHHHHHHH
Q 014172 259 KHPRLLVLSDEIYEHIIYAP-ATHTSFAS----LPGM---WERTLTVNGFSKA-FAMTGWRLGYIAG---PKHFVAACNK 326 (429)
Q Consensus 259 ~~~~i~vi~Deay~~~~~~~-~~~~~~~~----~~~~---~~~~i~~~S~SK~-~~~~G~R~G~v~~---~~~~~~~l~~ 326 (429)
+| +++||+||+|.++.|++ ..+.++.. +... ..++|+++||||. ++|+|||+||+++ ++++++.+.+
T Consensus 249 ~~-~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~ 327 (481)
T PTZ00377 249 EK-GIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYK 327 (481)
T ss_pred HC-CCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHH
Confidence 99 99999999999999953 33444432 2221 1368999999997 5999999999986 8999999988
Q ss_pred HhhcccCCCchHHHHHHHHHHhcCCC----ChHH---HHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCC-
Q 014172 327 IQSQFTSGASSISQKAGVAALGLGYA----GGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST- 398 (429)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~l~~~~~----~~~~---~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~- 398 (429)
... ...+++.++|.++..+|+.... .+.+ ++++++.|+++|+.+.+.|++++|+++..|+||||+|++++.
T Consensus 328 ~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p~gg~fl~~~~~l~ 406 (481)
T PTZ00377 328 LAS-INLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPVEGAMYAFPRIELP 406 (481)
T ss_pred Hhh-eecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecCCeeEEEEeeccCc
Confidence 764 3446899999999999964211 1223 344455689999999999999889999999999999987642
Q ss_pred -ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 399 -YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 399 -~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.......+ ..+.++.+++.+|++++||.|
T Consensus 407 ~~~~~~~~~-~~~~~~~~~~~~ll~~~gV~v 436 (481)
T PTZ00377 407 EKAIQEAKE-RGLAPDVLYCLELLESTGIVV 436 (481)
T ss_pred hhhHHHHHh-cCCCcHHHHHHHHHHHcCEEE
Confidence 10000000 011245678889999999986
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=412.77 Aligned_cols=347 Identities=26% Similarity=0.428 Sum_probs=300.6
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++..+.++.+.++.+.++..+..|+++|+|+.|+|++++|+.+.+++.+.+.. ...+|++..|.++||+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~ 83 (405)
T PRK09148 4 FHRIRRLPPYVFEQVNRLKAAARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYAR 83 (405)
T ss_pred hhhhhcCCccHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHH
Confidence 4667777788777777777777778889999999999998888899988887653 346899989999999999999998
Q ss_pred hcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+|..++++ +|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++.++++..+++++.+...
T Consensus 84 ~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~~ 163 (405)
T PRK09148 84 RFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHSI 163 (405)
T ss_pred HhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhcc
Confidence 889888887 8999999999999999999999999999999999999999999999999999766656556666555455
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..++...+++|+++||||.+|+
T Consensus 164 ~~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~ 242 (405)
T PRK09148 164 PKPIALIVNYPSNPTAYVADLDFYKDVVAFAKKH-DIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSM 242 (405)
T ss_pred ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCC
Confidence 6889999999999999999999999999999999 999999999999988765445566555445678999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+.......+++.+.|.++..+|.. .+++++++++.|+++|+.+.+.|+++ |+.+..|
T Consensus 243 pGlR~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~---~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p 318 (405)
T PRK09148 243 AGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG---PQDCIAEMRELYKKRRDVLVESFGRA-GWDIPPP 318 (405)
T ss_pred cchheeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCC
Confidence 9999999999999999999887776777889999999999975 36789999999999999999999987 7887789
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|+++|..+. ..++.+++++|+++.||.|
T Consensus 319 ~~g~f~~~~l~~~~~--------~~~~~~~~~~ll~~~gV~v 352 (405)
T PRK09148 319 AASMFAWAPIPEAFR--------HLGSLEFSKLLVEKADVAV 352 (405)
T ss_pred CeeEEEEEECCCccC--------CCCHHHHHHHHHHhCCEEE
Confidence 999999999985321 0246899999998789976
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-52 Score=413.01 Aligned_cols=347 Identities=24% Similarity=0.434 Sum_probs=299.5
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++.++.++.+..+...+++.++.+.++++|+.|+|+.++|+.+.+++.+.+.. ....|++..|..+||+++|+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~ 86 (403)
T PRK08636 7 FNKIKRLPKYVFAEVNELKMAARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKR 86 (403)
T ss_pred HHHHHhCCccHHHHHHHHHHHHHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHH
Confidence 3456667777777888888888888888999999999988888788887776654 367899999999999999999999
Q ss_pred hcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHH----H
Q 014172 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL----E 222 (429)
Q Consensus 148 ~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l----~ 222 (429)
.+|+.++++ +|++|+|+++++.+++++++++||.|++++|+|+.|...++..|++++.++++.++++.+|++.+ +
T Consensus 87 ~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 166 (403)
T PRK08636 87 KYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLE 166 (403)
T ss_pred HhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHH
Confidence 999888887 79999999999999999999999999999999999999999999999999986556688998754 5
Q ss_pred hhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 223 SKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 223 ~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
++++ ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++...+++..++...+++|+++|
T Consensus 167 ~~~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S 245 (403)
T PRK08636 167 KALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVALAKKE-RFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYT 245 (403)
T ss_pred HHHhhccCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEe
Confidence 5553 4788999999999999999999999999999999 99999999999999876555666776554567888999
Q ss_pred cChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 300 ~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
|||.||++|+|+||+++++++++.+.+.......+++.+.|.++..+++. ..++++++++.|+++++.+.+.|++.
T Consensus 246 ~SK~~~~~GlRiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~- 321 (403)
T PRK08636 246 LSKSYNMAGWRVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIALDG---DQSCVEEIRETYRKRRDVLIESFANA- 321 (403)
T ss_pred cccccCCccceeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 99999999999999999999999998877655567788899888877764 36789999999999999999999997
Q ss_pred CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+.+..|++|+|+|++++.... ..++.+++.+|++++||.|
T Consensus 322 ~~~~~~p~~g~~~~~~l~~~~~--------~~~~~~l~~~ll~~~gV~v 362 (403)
T PRK08636 322 GWELQKPRASMFVWAKIPEPAR--------HLGSLEFSKQLLTEAKVAV 362 (403)
T ss_pred CCcccCCCcceEEEEECCCccC--------CCCHHHHHHHHHHhCCEEE
Confidence 7888899999999999985311 0247899999998889986
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=410.80 Aligned_cols=358 Identities=43% Similarity=0.727 Sum_probs=311.6
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.+++|+..+.++.+..+.+.+++....+.++|+|+.|.|++++|+.+.+++.+.+.....+|++..|.++||++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 84 (402)
T PRK06107 5 VPAARVSRIKPSPSTAAAARARELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLE 84 (402)
T ss_pred hhhHHhhhcCccHHHHHHHHHHHHHhccCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 47778887777777777777887777788899999999999988999999999887666789999999999999999999
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..|...+...|++++.++++.+++|.+|++.+++.+.
T Consensus 85 ~~~g~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 164 (402)
T PRK06107 85 RRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT 164 (402)
T ss_pred HhcCCCCChhhEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC
Confidence 98898889999999999999999999999999999999999999999999999999999998666678899999999998
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC-CCCCceEEEeccChhcc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFA 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~ 305 (429)
++++++++++|+||||.+++.+++++|+++|++|++++||+||+|.++.|.+...+++..+. +..+++++++||||.|+
T Consensus 165 ~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~ 244 (402)
T PRK06107 165 PRTRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYA 244 (402)
T ss_pred cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhc
Confidence 89999999999999999999999999999999964799999999999988765555555553 23578999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
++|+|+||+++++++++.+.........+++.+.|.++..+|.. ...++++.++.|+++++.+.+.|++++|+++.+
T Consensus 245 ~pGlRiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~ 321 (402)
T PRK06107 245 MTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG---DQSFVTESVAVYKQRRDYALALLNAIPGLSCLV 321 (402)
T ss_pred CcccceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999988777788999999999999975 367899999999999999999999887899889
Q ss_pred CCceEEEEEecCCccCCc-ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSE-AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+||||+|++++...+.. .++ ....++.+++++|++++||.+
T Consensus 322 p~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~gv~v 364 (402)
T PRK06107 322 PDGAFYLYVNCAGLIGKTTPEG-KVLETDQDVVLYLLDSAGVAV 364 (402)
T ss_pred CCcceEEeeecccccccccccc-cCCCCHHHHHHHHHHhCCEEE
Confidence 999999999985321100 000 011257899999999889986
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=410.98 Aligned_cols=340 Identities=27% Similarity=0.441 Sum_probs=293.1
Q ss_pred CchhHHHHHHHHHHHh--cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCC-
Q 014172 77 PSKTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLS- 152 (429)
Q Consensus 77 ~~~~~~~~~~~~~~~~--~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~- 152 (429)
.+.+..+....+.++. +|.++|+|+.|+|++.+++.+.+++.+.+... ...|+ ..|..+||+++++++.+.+|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~ 102 (410)
T PRK06290 24 IYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKD 102 (410)
T ss_pred hhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCc
Confidence 4455555555555543 36679999999999999999999988876543 45685 5899999999999999988987
Q ss_pred CCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcE
Q 014172 153 YTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 231 (429)
Q Consensus 153 ~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~ 231 (429)
++++ +|++|+|+++++..++.+++++||.|+++.|+|+.|...++..|++++.++++.+++|.+|++.+++.+.+++++
T Consensus 103 ~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~ 182 (410)
T PRK06290 103 IDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKL 182 (410)
T ss_pred CCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceE
Confidence 8886 799999999999999999999999999999999999999999999999999987777889999999998888999
Q ss_pred EEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee
Q 014172 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (429)
Q Consensus 232 i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~ 311 (429)
|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++ .+.++.++....+++|+++||||.+|++|+|+
T Consensus 183 i~l~nP~NPTG~v~s~e~l~~l~~la~~~-~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRi 260 (410)
T PRK06290 183 LYLNYPNNPTGAVATKEFYEEVVDFAKEN-NIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRL 260 (410)
T ss_pred EEEECCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhcCCchhhe
Confidence 99999999999999999999999999999 99999999999998865 33455555544578899999999999999999
Q ss_pred eEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEE
Q 014172 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 391 (429)
Q Consensus 312 G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~ 391 (429)
||+++++++++.+......+..+.+.++|.++..+|++ .+++++.++.|+++++.+.+.|+++ |+.+.+|+||||
T Consensus 261 G~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~g~f~ 335 (410)
T PRK06290 261 AFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDH----PEITEKIREKYSRRLDKLVKILNEV-GFKAEMPGGTFY 335 (410)
T ss_pred EeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhC----cHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCeeeE
Confidence 99999999999999888777777888999999999986 4688899999999999999999998 899889999999
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+++|.... .+. ...++.+++++|+++++|.+
T Consensus 336 l~v~lp~~~~---~~~-~~~~~~~~~~~Ll~~~~v~~ 368 (410)
T PRK06290 336 LYVKAPKGTK---SGI-KFENAEEFSQYLIKEKLIST 368 (410)
T ss_pred EEEECCCccc---cCC-CCCCHHHHHHHHHHhCCEEE
Confidence 9999985310 000 00268899999999977753
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=417.22 Aligned_cols=344 Identities=23% Similarity=0.369 Sum_probs=283.5
Q ss_pred hHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC
Q 014172 80 TVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155 (429)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~i~L~~g~~---~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~ 155 (429)
+..+...++++...|.++++|+.|+| ++++|+.+.+++.+.+.. ...+|++..|.++||+++++|+++.+|+.+++
T Consensus 17 ~~~~~~~~~~~~~~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~ 96 (433)
T PRK06855 17 IRNIVAVAKKLEKLGVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITP 96 (433)
T ss_pred HHHHHHHHHHHHhccccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCH
Confidence 34555566666667888999999999 678899999998887754 45689999999999999999999989999999
Q ss_pred CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH-HHcCCEEEEecCCCCCCCCCCHHHHHhhcc--cCCcEE
Q 014172 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIADATPVILPTRISENFLLDPKVLESKLT--EKSRLL 232 (429)
Q Consensus 156 ~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~--~~~~~i 232 (429)
++|++|+|++++|.+++. ++++||.|++++|+|+.|.... ...|++++.++++++++|.+|+++|++++. ++++++
T Consensus 97 ~~I~it~G~~~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i 175 (433)
T PRK06855 97 DDIIFFNGLGDAIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGI 175 (433)
T ss_pred hHEEEcCcHHHHHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEE
Confidence 999999999999998875 7899999999999999987653 456999999998876778999999999986 467899
Q ss_pred EEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceee
Q 014172 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312 (429)
Q Consensus 233 ~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G 312 (429)
++++||||||.+++.+++++|+++|++| |++||+||+|.++.|.+..++++.++.. ..++|+++||||.|+++|||+|
T Consensus 176 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~-~~~II~De~Y~~l~~~~~~~~sl~~~~~-~~~~I~~~S~SK~~~~pGlRiG 253 (433)
T PRK06855 176 LLINPDNPTGAVYPKEILREIVDIAREY-DLFIICDEIYNNIVYNGKKTVPLSEVIG-DVPGIALKGISKELPWPGSRCG 253 (433)
T ss_pred EEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCCHHHHcC-cCCeEEEecCccccCCCcceEE
Confidence 9999999999999999999999999999 9999999999999997655566666643 2468999999999999999999
Q ss_pred EEEcC-----H---HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 313 YIAGP-----K---HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 313 ~v~~~-----~---~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
|++++ + ++++.+..... ...+++.+.|.++..+++++.. +++++++++.|++|++.+.+.|++++|+.+.
T Consensus 254 ~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~ 331 (433)
T PRK06855 254 WIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPEY-KNYLKERNKRYEKRSNIAYEKLKDVPGLKVN 331 (433)
T ss_pred EEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCCeecc
Confidence 99973 2 23333333322 2446789999999999986432 6889999999999999999999988788888
Q ss_pred cCCceEEEEEecCCccCCcccCC----------------CCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGF----------------GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+||||+|+++|+.......+. +...++.+|+.+|+++.||.+
T Consensus 332 ~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 391 (433)
T PRK06855 332 RTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICV 391 (433)
T ss_pred CCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEE
Confidence 99999999999986321000000 001247789999999999986
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=408.89 Aligned_cols=320 Identities=22% Similarity=0.342 Sum_probs=284.5
Q ss_pred CCeEEcCCCCCC-CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHHHHHH
Q 014172 95 VSVIRLAAGEPD-FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQA 171 (429)
Q Consensus 95 ~~~i~L~~g~~~-~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al~~~ 171 (429)
.+.|+|+.|+|+ +++|+.+.+++.+.+... ...|++..|.++||++|++++++.+|.++++ ++|++|+|+++++..+
T Consensus 39 ~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~ 118 (405)
T PRK06207 39 GRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLA 118 (405)
T ss_pred CCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHH
Confidence 468999999987 456788888888887653 4679888999999999999999999988888 8999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC---CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR---ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~---~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~ 248 (429)
+.+++++||+|++++|+|+.|...++..|++++.++++ .++++.+|++.|+++++++++++++++||||||.+++.+
T Consensus 119 ~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~e 198 (405)
T PRK06207 119 VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRVFLFSNPNNPAGVVYSAE 198 (405)
T ss_pred HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeEEEECCCCCCCCcCCCHH
Confidence 99999999999999999999999999999999999985 234688999999999988899999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh
Q 014172 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (429)
Q Consensus 249 ~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~ 328 (429)
++++|+++|++| |++||+||+|.++.|++..+.++..+....+++|+++||||.|+++|+|+||+++++++++.+....
T Consensus 199 ~l~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~ 277 (405)
T PRK06207 199 EIAQIAALARRY-GATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQ 277 (405)
T ss_pred HHHHHHHHHHHc-CCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHH
Confidence 999999999999 9999999999999997755555555544468999999999999999999999999999999999888
Q ss_pred hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCC
Q 014172 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
.....+.+.+.|.++..+|+. ...++++..+.++++|+.+.+.|++++++++.+|++|+|+|++++.. .
T Consensus 278 ~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~-~------- 346 (405)
T PRK06207 278 AIVSLRAAGYSQAVLRTWFSE---PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRL-A------- 346 (405)
T ss_pred hHhccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCccc-C-------
Confidence 777778888999999999975 35678888889999999999999988789988899999999999752 0
Q ss_pred CCCChHHHHHHHHHhCCeec
Q 014172 409 KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+++++|++++||.|
T Consensus 347 --~~~~~~~~~l~~~~gV~v 364 (405)
T PRK06207 347 --VSLHDFVKILRLQAGVIV 364 (405)
T ss_pred --CCHHHHHHHHHHhcCEEE
Confidence 267899999987789986
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=406.63 Aligned_cols=348 Identities=34% Similarity=0.568 Sum_probs=303.9
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.+++++.++.++.+..+...+.+++..++++|+|+.|+|++++|+.+.+++.+.+......|++..|.++||+++|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 81 (388)
T PRK07337 2 RLAARVDAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYA 81 (388)
T ss_pred chhhHhHhcCchHHHHHHHHHHHHHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 46778888788878888888877777788899999999999888999999998887666789888999999999999999
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.+|++.+++|.+|++++++.++
T Consensus 82 ~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (388)
T PRK07337 82 RRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG 161 (388)
T ss_pred HHhCCCCChHhEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC
Confidence 98998889999999999999999999999999999999999999999999999999999999766678899999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|.+. ..+...+ .+++|+++||||.||+
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~-~~~~~~~---~~~vi~~~S~SK~~~~ 236 (388)
T PRK07337 162 ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRAR-GGFTIVDEIYQGLSYDAA-PVSALSL---GDDVITINSFSKYFNM 236 (388)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHC-CCEEEEeccccccccCCC-CcChhhc---cCCEEEEEechhhcCC
Confidence 9999999999999999999999999999999999 999999999999887653 3333332 4679999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-ec
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SE 385 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~~ 385 (429)
+|+|+||+++++++++.+.+.......+.+.+.|.++..++..+. .+++++.++.|+++|+++.+.|+++ |+.+ ..
T Consensus 237 ~G~RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~ 313 (388)
T PRK07337 237 TGWRLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDT--LAIYERRRAEFKRRRDFIVPALESL-GFKVPVM 313 (388)
T ss_pred chhheeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHHHHHHHhc-CCccccC
Confidence 999999999999999999888777777789999999999987532 3557888999999999999999997 7664 47
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|++|+|+|++++.... ....++.+|+.+|++++||.|
T Consensus 314 p~~g~f~~~~~~~~~~------~~~~~~~~~~~~ll~~~gv~v 350 (388)
T PRK07337 314 PDGAFYVYADCRGVAH------PAAGDSAALTQAMLHDAGVVL 350 (388)
T ss_pred CCeeEEEEEecccccC------CCCCCHHHHHHHHHHhCCEEE
Confidence 8999999999975210 011367899999998889986
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=409.37 Aligned_cols=334 Identities=22% Similarity=0.403 Sum_probs=284.7
Q ss_pred HHHHHHHHhc--CCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014172 84 TDQATALAQA--GVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156 (429)
Q Consensus 84 ~~~~~~~~~~--g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~ 156 (429)
...+..+... |+++|+|+.|+|+ +++|+++.+++.+++..+ ...|++..|.++||+++++++.+.+|.+++++
T Consensus 39 ~~~~~~~~~~~~~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~ 118 (430)
T PLN00145 39 NRVKACVDAGGGPRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTD 118 (430)
T ss_pred HHHHHhhhcccCCCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChh
Confidence 3444444333 7789999999985 777899999999988764 45799889999999999999999899889999
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 157 ~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
+|++|+|++++|.+++.+++++||+|++++|+|+.|...+...|++++.+++.++++|.+|++.+++.++++++++++++
T Consensus 119 ~v~it~G~~~al~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~ 198 (430)
T PLN00145 119 DIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIIN 198 (430)
T ss_pred hEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999987777899999999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..+.. .+++|+++||||.|+++|||+||+++
T Consensus 199 P~NPtG~v~~~~~l~~i~~~a~~~-~i~ii~De~Y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pG~RlG~iv~ 276 (430)
T PLN00145 199 PNNPCGSVYSYEHLAKIAETARKL-GILVIADEVYDHLTFGSKPFVPMGVFGE-VAPVLTLGSISKRWVVPGWRLGWIAT 276 (430)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccchhhccCCCCccchhhhcc-cCcEEEEeccccccCCCCeeEEEEEE
Confidence 999999999999999999999999 9999999999999987655556655554 57899999999999999999999997
Q ss_pred --CHHHHH------HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-ecCC
Q 014172 317 --PKHFVA------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQ 387 (429)
Q Consensus 317 --~~~~~~------~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~~p~ 387 (429)
++.+++ .+.... ....+++.+.|.++..+|... .++++++.++.++++|+.+.+.|++++|+.+ ..|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ 353 (430)
T PLN00145 277 CDPNGILKETKVVDSIRNYL-NISTDPATFVQGAIPQIIANT--KEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPE 353 (430)
T ss_pred ecchhhhhhhHHHHHHHHHh-cccCCCCHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCC
Confidence 444433 333332 334467899999999999852 2678999999999999999999999888876 4799
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+||+|++++.... ....++.+|+.+|++++||.+
T Consensus 354 ga~y~~v~l~~~~~------~~~~~~~~~~~~ll~~~gV~v 388 (430)
T PLN00145 354 GSMFVMVKLDLSCL------SGIKDDMDFCCKLAKEESVVV 388 (430)
T ss_pred eeeEEEeccChhhc------CCCCCHHHHHHHHHHhCCEEE
Confidence 99999999973100 011257889999999989976
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=402.51 Aligned_cols=319 Identities=27% Similarity=0.513 Sum_probs=282.4
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHHHHHHH
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAV 172 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al~~~l 172 (429)
++++|+|+.|+|++++++.+.+++.+.+.....+|++..|.++||+++++++++.+|.++++ ++|++|+|+++++..++
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 28 QHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred hCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 35699999999999989999999998877666789999999999999999999999987766 68999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
++++++||+|++++|+|..|...++..|++++.++++. +++.+|++.+++.+++++++|++++||||||.+++.+++++
T Consensus 108 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG~~~s~~~~~~ 186 (384)
T PRK12414 108 SALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAITPRTRMIIVNTPHNPSATVFSAADLAR 186 (384)
T ss_pred HHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcCcccEEEEEcCCCCCCCcCCCHHHHHH
Confidence 99999999999999999999999999999999999864 35789999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhccc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~ 332 (429)
|+++|++| +++||+||+|.++.|++....++..++...+++|+++||||.||++|+|+||+++++++++.+.+......
T Consensus 187 i~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~l~~~~~~~~ 265 (384)
T PRK12414 187 LAQLTRNT-DIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDEIRKVHQFMV 265 (384)
T ss_pred HHHHHHHC-CeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHHHHHHHhhee
Confidence 99999999 99999999999999876544455555544578999999999999999999999999999999988877667
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCC
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 412 (429)
.+++.+.|.++..+|.. ..+..+.++.|+++|+.+.+.|++. |+++.+|+||||+|++++.... .+
T Consensus 266 ~~~s~~~q~a~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~gg~~~~~~~~~~~~---------~~ 331 (384)
T PRK12414 266 FSADTPMQHAFAEALAE----PASYLGLGAFYQRKRDLLARELAGS-RFELLPSEGSFFMLARFRHFSD---------ES 331 (384)
T ss_pred cCCCcHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCcceEEEEcccccCC---------CC
Confidence 78899999999999976 2334467889999999999999998 8888899999999999875211 25
Q ss_pred hHHHHHHHHHhCCeec
Q 014172 413 SESLCRYLLDKAQVLL 428 (429)
Q Consensus 413 ~~~~~~~Ll~~~gV~v 428 (429)
+.+++.++++++||.|
T Consensus 332 ~~~~~~~~l~~~gV~v 347 (384)
T PRK12414 332 DSDFVLRLIRDARVAT 347 (384)
T ss_pred HHHHHHHHHHhCCEEE
Confidence 6788888888889976
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-51 Score=405.23 Aligned_cols=337 Identities=25% Similarity=0.451 Sum_probs=292.0
Q ss_pred cccccCCchhHHHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 014172 71 RVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149 (429)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~ 149 (429)
++..++.+.+.++.+.+.+.. .+|+++|+|+.|+|++++|+.+.+++.+.+. ....|++..|.++||+++|+++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~ 81 (393)
T TIGR03538 3 NLSRLQPYPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLH-GLSTYPTTKGLPELRQAIARWLERRF 81 (393)
T ss_pred hhhhCCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 455566677777777776654 3678999999999999999999999998765 46789999999999999999999988
Q ss_pred CCC--CCCC-cEEEecChHHHHHHHHHHhcCCCCE--EEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh
Q 014172 150 GLS--YTPD-QILVSNGAKQSILQAVLAVCSPGDE--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (429)
Q Consensus 150 g~~--~~~~-~i~~t~G~~~al~~~l~~l~~~gd~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 224 (429)
|++ ++++ +|++|+|+++++.+++++++++||. |++++|+|..|...++..|++++.++++++++|.+|++++++.
T Consensus 82 ~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 161 (393)
T TIGR03538 82 DLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPES 161 (393)
T ss_pred CCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHH
Confidence 876 6785 8999999999999999999999986 9999999999999999999999999998777789999999998
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC-CCCccc-c---CC-CCCCceEEEe
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFA-S---LP-GMWERTLTVN 298 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~-~~~~~~-~---~~-~~~~~~i~~~ 298 (429)
+.+++|+|++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++. ...+.. . .. ...+++|+++
T Consensus 162 ~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~ 240 (393)
T TIGR03538 162 VWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQY-GFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFH 240 (393)
T ss_pred HhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEe
Confidence 877899999999999999999999999999999999 999999999999888642 222221 1 11 1257899999
Q ss_pred ccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 014172 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 299 S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
||||.|+++|+|+||+++++++++.+.+.......+++.+.|.++...+.. ++++++.++.|+++++.+.+.|+++
T Consensus 241 S~SK~~~~~GlRvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~ 316 (393)
T TIGR03538 241 SLSKRSNLPGLRSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLASIAAWND----EQHVRENRALYREKFAAVLEILGQV 316 (393)
T ss_pred cchhhcCCcccceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999998877666667889999998888864 6789999999999999999999875
Q ss_pred CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 ~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+..|++|+|+|++++ . ++.+++++|++++||.|
T Consensus 317 --~~~~~p~gg~f~~~~~~-~------------~~~~~~~~l~~~~gV~v 351 (393)
T TIGR03538 317 --LDLELPDAGFYLWPKVP-G------------DDEAFARALYEEENVTV 351 (393)
T ss_pred --CcccCCCeeEEEEEECC-C------------CHHHHHHHHHHHCCEEE
Confidence 45668999999999997 2 57889999998889986
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=401.78 Aligned_cols=318 Identities=45% Similarity=0.735 Sum_probs=284.3
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVL 173 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l~ 173 (429)
+++|+|+.|+|++++++.+.+++.+.+.....+|++..|.++||+++++++.+.+|+.++++ +|++|+|+++++.++++
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 99 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMR 99 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 46899999999998888888988888766667898889999999999999999989888886 89999999999999999
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+++++||+|++++|+|+.|...++..|++++.++++.++++.+|++.+++++.++++++++++||||||.+++.+++++|
T Consensus 100 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPtG~~~s~~~~~~l 179 (378)
T PRK07682 100 AIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEEI 179 (378)
T ss_pred HhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCCCCcCcCcCHHHHHHH
Confidence 99999999999999999999999999999999998766678899999999998899999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~ 333 (429)
+++|++| +++||+||+|.++.|++. ..++..+....+++++++||||.|+++|+|+||+++++++++.+.........
T Consensus 180 ~~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~~l~~~~~~~~~ 257 (378)
T PRK07682 180 AVIVEKH-DLIVLSDEIYAELTYDEA-YTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSEAMLKIHQYSMM 257 (378)
T ss_pred HHHHHHc-CcEEEEehhhhhcccCCC-CCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHHHHHHHHHhhcc
Confidence 9999999 999999999999998753 33455555445789999999999999999999999999999999887665566
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
+++.+.|.++..+|+. .+.+++++++.|+++|+.+.+.|+++ |+++..|+|+||+|++++.. + .++
T Consensus 258 ~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~g~~~~~~~~~~~-~---------~~~ 323 (378)
T PRK07682 258 CAPTMAQFAALEALRA---GNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCHVPGGAFYAFPSISST-G---------LSS 323 (378)
T ss_pred CCCHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHC-CCccCCCCeeEEEEEeccCC-C---------CCH
Confidence 7889999999999986 45678899999999999999999998 88888999999999998531 0 268
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
.+++++|++++||.|
T Consensus 324 ~~~~~~ll~~~gv~v 338 (378)
T PRK07682 324 EEFAEQLLLEEKVAV 338 (378)
T ss_pred HHHHHHHHHhCCEEE
Confidence 899999998779986
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=400.93 Aligned_cols=340 Identities=33% Similarity=0.528 Sum_probs=296.2
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~ 149 (429)
+++.++.++.+.++...+. ..+++|+|+.|+|++++|+.+.+++.+.+.+....|++..|.++||+++++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~ 78 (382)
T PRK06108 3 PAARALPESGIREVANAGR----GREGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLH 78 (382)
T ss_pred hhhhhCCchHHHHHHHHHh----ccCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 3444555555555544332 224689999999999999999999999887766679999999999999999999888
Q ss_pred CCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhcccC
Q 014172 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEK 228 (429)
Q Consensus 150 g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~~~ 228 (429)
|..+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.+|++.+ ++|.+|++.+++.++++
T Consensus 79 ~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~ 158 (382)
T PRK06108 79 GVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITPR 158 (382)
T ss_pred CCCcCcceEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCcc
Confidence 98889999999999999999999999999999999999999999999999999999998753 46789999999999888
Q ss_pred CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccC-CCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|+ +...+++..+....+++++++||||.||++
T Consensus 159 ~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (382)
T PRK06108 159 TRALFINSPNNPTGWTASRDDLRAILAHCRRH-GLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMT 237 (382)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCc
Confidence 99999999999999999999999999999999 9999999999999886 333445455544357899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.+.......+++.+.|.++..+|.. ..+++++++++++++++.+.+.|++++|+++..|+
T Consensus 238 G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~ 314 (382)
T PRK06108 238 GWRLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDE---GEDFVAELVARLRRSRDHLVDALRALPGVEVAKPD 314 (382)
T ss_pred ccceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 999999999999999988776555677899999999999986 46788999999999999999999988889998999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+|+|++++.. .++.+++++|++++||.|
T Consensus 315 ~g~~~~~~l~~~-----------~~~~~~~~~ll~~~gV~v 344 (382)
T PRK06108 315 GAMYAFFRIPGV-----------TDSLALAKRLVDEAGLGL 344 (382)
T ss_pred eeEEEEEeCCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 999999999753 367899999998889986
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=402.36 Aligned_cols=341 Identities=28% Similarity=0.485 Sum_probs=298.4
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+++++.++..+.+..+...+ ++.++|+|+.|.|++++++.+.+++.+.+......|++..|.++||+++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~ 82 (386)
T PRK09082 8 PQSKLPNVGTTIFTVMSALA-----AEHGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTAR 82 (386)
T ss_pred hhhHhhccCccHHHHHHHHH-----hhCCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 44556666666444443222 2346899999999998888999999988876667899999999999999999999
Q ss_pred hcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+|.+.+++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..|++++.++++. .++.+|++++++.++
T Consensus 83 ~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~ 161 (386)
T PRK09082 83 LYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PDFRVDWQRFAAAIS 161 (386)
T ss_pred HhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccccCCHHHHHHhcC
Confidence 889877775 899999999999999999999999999999999999999999999999999864 358899999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++++||||||.+++.+++++|+++|++| ++++|+||+|.++.|++....++.++....+++++++||||.||+
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~ 240 (386)
T PRK09082 162 PRTRLIILNTPHNPSGTVWSAADMRALWQLIAGT-DIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHV 240 (386)
T ss_pred ccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccc
Confidence 8999999999999999999999999999999999 999999999999999765556676666556899999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+.......+++.+.|.++..++.. .+++++++++.|+++++.+.+.|++. |+++.+|
T Consensus 241 ~G~RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~ 316 (386)
T PRK09082 241 TGWKVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRA---EPEHYLELPAFYQAKRDRFRAALANS-RFKLLPC 316 (386)
T ss_pred hhhhhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC
Confidence 9999999999999999999887767778999999999998874 36789999999999999999999986 8899899
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+||||+|+++++..+ .++.+|+++|++++||.+
T Consensus 317 ~g~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~v~v 349 (386)
T PRK09082 317 EGTYFQLVDYSAISD---------LDDVEFCQWLTREHGVAA 349 (386)
T ss_pred CeeEEEEEeccccCC---------CCHHHHHHHHHHhCCEEE
Confidence 999999999974201 268899999998989986
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=403.32 Aligned_cols=338 Identities=26% Similarity=0.371 Sum_probs=282.1
Q ss_pred cccccccCC-chhHHHHHHHHHHHhc--CCCeEEcCCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCCCCHHHHHH
Q 014172 69 SPRVNAVKP-SKTVAITDQATALAQA--GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSA 140 (429)
Q Consensus 69 s~~~~~~~~-~~~~~~~~~~~~~~~~--g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-----~~~~Y~~~~G~~~lr~~ 140 (429)
+..+.+++. +.+.++..+.++.+.. ++++|+|+.|+|++++|+.+.+++.+++.+ ....|++..|.++||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~a 84 (409)
T PRK07590 5 NENYLKLKAGYLFPEIARRVNAFREANPEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREK 84 (409)
T ss_pred ccccCccCCcchHHHHHHHHHHHhhhcCCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHH
Confidence 333444443 4555666666666554 567999999999999999999999988764 34689999999999999
Q ss_pred HHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCE-----------EEEecCC
Q 014172 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-----------PVILPTR 209 (429)
Q Consensus 141 ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-----------~~~v~~~ 209 (429)
|++++.+.+|+.+++++|++|+|+++++.++ ..++++||+|++++|+|+.|...++..|.+ ++.++++
T Consensus 85 ia~~~~~~~g~~~~~~~I~it~Ga~~al~~l-~~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 163 (409)
T PRK07590 85 IAENDYQARGCDISADEIFISDGAKCDTGNI-LDIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCT 163 (409)
T ss_pred HHHHHHHhcCCcCChhhEEECCCHHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecc
Confidence 9999988899999999999999999999975 456789999999999999999999999997 8999987
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
.++++.+|.+. +++|+|++|+||||||.+++.+++++|+++|++| +++||+||+|.++.+++..+.++..++.
T Consensus 164 ~~~~~~~d~~~------~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~~~~~~~~~~~~~ 236 (409)
T PRK07590 164 AENNFVPELPE------EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKEN-GSLILFDAAYEAFISDPSLPHSIYEIEG 236 (409)
T ss_pred cccCCcccCcc------cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHc-CeEEEEEccchhhccCCCCCcchhhCCC
Confidence 66666666432 5789999999999999999999999999999999 9999999999999887654456666655
Q ss_pred CCCceEEEeccChhcccccceeeEEEcCHHHHHHH------------HHHhhcccCCCchHHHHHHHHHHhcCCCChHHH
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC------------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l------------~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~ 357 (429)
..+++|+++||||.||++|+|+||+++++++++.+ .........+++.+.|.++..++... ..+|+
T Consensus 237 ~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~--~~~~~ 314 (409)
T PRK07590 237 ARECAIEFRSFSKTAGFTGTRCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPE--GKAQI 314 (409)
T ss_pred cccceEEEecCccccCCcCceeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCC--cHHHH
Confidence 45689999999999999999999999999988732 11122222357899999998888742 35789
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++++.|+++|+.+.+.|+++ |+++..|++++|+|++++.. .++.+++.+|++++||.+
T Consensus 315 ~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~~-----------~~~~~~~~~l~~~~gv~v 373 (409)
T PRK07590 315 KELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDG-----------MSSWDFFDKLLQEANVVG 373 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCceecCCcceEEEEECCCC-----------CCHHHHHHHHHHHCCEEE
Confidence 999999999999999999998 88888899999999999853 267899999998889976
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=400.32 Aligned_cols=341 Identities=26% Similarity=0.492 Sum_probs=295.8
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhh
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEE 148 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~ 148 (429)
++++.+++++.+..+..... ..++|+|+.|.|+.+.|+.+.+++.+.+.....+|++..|.++||+++++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~ 79 (387)
T PRK08912 5 NPVFADLPTTIFEVMSQLAR-----EHGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARF 79 (387)
T ss_pred hHHHhhCCCCHHHHHHHHHh-----hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 46666777776555544332 2468999999999888888999888877666678999999999999999999988
Q ss_pred cCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 149 NGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 149 ~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
+|+.++++ +|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.++++. +++.+|++.+++.+.+
T Consensus 80 ~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~~ 158 (387)
T PRK08912 80 QGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAALAAAFSP 158 (387)
T ss_pred hCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHHHHHHhCc
Confidence 89888998 999999999999999999999999999999999999999999999999999864 3578999999999988
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
+++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..+.+..+++++++||||.||++
T Consensus 159 ~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK08912 159 RTKAVLLNNPLNPAGKVFPREELALLAEFCQRH-DAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLT 237 (387)
T ss_pred cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHC-CeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCc
Confidence 999999999999999999999999999999999 9999999999999887654555655554457899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.........+.+...|.++..++.. .++++++.++.++++++.+.+.|+++ |+++.+|+
T Consensus 238 GlRiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 313 (387)
T PRK08912 238 GWKVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGK---PDDYFEGMRADLARSRDRLAAGLRRI-GFPVLPSQ 313 (387)
T ss_pred CceeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC
Confidence 999999999999999998877666666777788888888864 46788999999999999999999998 88888999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+||+|++++... ...++.+++++|++++||.|
T Consensus 314 g~~~l~~~l~~~~--------~~~~~~~~~~~l~~~~gV~v 346 (387)
T PRK08912 314 GTYFLTVDLAPLG--------LAEDDVAFCRRLVEEAGVAA 346 (387)
T ss_pred cceEEEecccccC--------CCCCHHHHHHHHHhcCCEEE
Confidence 9999999997520 01368899999998889976
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=407.23 Aligned_cols=355 Identities=20% Similarity=0.363 Sum_probs=289.6
Q ss_pred ccccCcccccccCCchhHHHHHHH-HHH-HhcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQA-TAL-AQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLE 136 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~-~~~-~~~g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~ 136 (429)
|.+.-++.+..-....++.+.... ... +..++++|+|+.|+|+ +.+|+++.+++.++++.+ ...|++..|.++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 112 (462)
T PLN02187 33 WRFGGSDKAAKASTVTLRGVIYMLFDNCGKDVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILP 112 (462)
T ss_pred cccCcchhhhhhhhchHhhHHHHHHhhcccCCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHH
Confidence 544444444433323333333222 222 2346689999999988 566789999999988754 367999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCC
Q 014172 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (429)
Q Consensus 137 lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 216 (429)
||++||+++.+.+|..+++++|++|+|++++|.+++.++++|||+|++++|+|+.|...++..|++++.+++.++++|.+
T Consensus 113 lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~ 192 (462)
T PLN02187 113 ARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEI 192 (462)
T ss_pred HHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCcc
Confidence 99999999998889889999999999999999999999999999999999999999999999999999999876678999
Q ss_pred CHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEE
Q 014172 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296 (429)
Q Consensus 217 d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~ 296 (429)
|++.++++++++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++..+.. ..++|+
T Consensus 193 d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~-~i~iI~DE~Y~~l~f~~~~~~s~~~~~~-~~~vi~ 270 (462)
T PLN02187 193 DLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKL-GIMVISDEVYDRTIFGDNPFVSMGKFAS-IVPVLT 270 (462)
T ss_pred CHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCCceeHHHhcc-CCcEEE
Confidence 99999999988999999999999999999999999999999999 9999999999999997655555655544 257999
Q ss_pred EeccChhcccccceeeEEEcC-H-H---HHHHHHHHhhcccC--CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 014172 297 VNGFSKAFAMTGWRLGYIAGP-K-H---FVAACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369 (429)
Q Consensus 297 ~~S~SK~~~~~G~R~G~v~~~-~-~---~~~~l~~~~~~~~~--~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~ 369 (429)
++||||.|+++|||+||++++ + . +++.+......+.. +++.+.|.++.++|+.. ..+|++++++.|+++|+
T Consensus 271 l~SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~--~~~~l~~~~~~l~~~r~ 348 (462)
T PLN02187 271 LAGISKGWVVPGWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKA--DKNFFAKKNKILKHNVD 348 (462)
T ss_pred EecchhhcCCccceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHH
Confidence 999999999999999999983 3 3 33456565555443 56899999999999752 36899999999999999
Q ss_pred HHHHHhccCCCce-eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 370 FLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 370 ~l~~~L~~l~g~~-~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+.|++++++. +..|+||+|+|++++.... .++.++.+++.+|+++.||.|
T Consensus 349 ~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~------~~~~~~~~~~~~ll~~~gV~v 402 (462)
T PLN02187 349 LVCDRLKDIPCVVCPKKPESCTYLLTKLELSLM------DNIKDDIDFCVKLAREENLVF 402 (462)
T ss_pred HHHHHHhhCCCCcCCCCCCEeEEEEeecChhhC------CCCCCHHHHHHHHHhhCCEEE
Confidence 9999999986554 3479999999998863100 011256789999988889976
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-50 Score=399.12 Aligned_cols=343 Identities=38% Similarity=0.633 Sum_probs=298.6
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++.++.......+..+.+..+ ...++|+|+.|+|++++|+.+.+++.+++......|++..|.++||+++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 85 (391)
T PRK08361 10 IAGRINLIQRSKIRELFERAS----KMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKK 85 (391)
T ss_pred hhHHHHhCCccHHHHHHHHHH----hhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 466666666665555544332 2246899999999998899999999998876667898999999999999999998
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|..+++++|++|+|+++++.+++.+++++||+|++++|+|..+...++..|++++.++++.+++|.+|++.+++.+++
T Consensus 86 ~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~ 165 (391)
T PRK08361 86 FYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELITK 165 (391)
T ss_pred HhCCCCCcccEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhccc
Confidence 88888899999999999999999999999999999999999999999999999999999998777788999999999998
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
+++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++....++..+. .+++++++||||.||++
T Consensus 166 ~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~~~~ 242 (391)
T PRK08361 166 RTRMIVINYPNNPTGATLDKEVAKAIADIAEDY-NIYILSDEPYEHFLYEGAKHYPMIKYA--PDNTILANSFSKTFAMT 242 (391)
T ss_pred ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEEcccccceeCCCCCCCHhhcC--CCCEEEEecCchhcCCc
Confidence 999999999999999999999999999999999 999999999999988654444554442 46899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.+.......+++.+.|.++..+|.++.. .+++++.++.++++++.+.+.|++++|+++..|+
T Consensus 243 GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 321 (391)
T PRK08361 243 GWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES-WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPK 321 (391)
T ss_pred HhhhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCC
Confidence 999999999999999988776655667889999999999986432 3578999999999999999999998889999999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
||||+|++++.. + .++.+++++|++++||.|
T Consensus 322 g~~~~~~~l~~~-~---------~~~~~l~~~l~~~~gv~v 352 (391)
T PRK08361 322 GAFYVFANIDET-G---------MSSEDFAEWLLEKARVVV 352 (391)
T ss_pred EEEEEEEECCCC-C---------CCHHHHHHHHHHhCCEEE
Confidence 999999999742 0 268899999988889986
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=398.78 Aligned_cols=353 Identities=51% Similarity=0.815 Sum_probs=313.4
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l 145 (429)
|++|+++.++.++.+.++...+.++...+.++|+|+.|+|++++++.+.+++.+.+.+....|++..|..+||+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~ 81 (393)
T PRK05764 2 MKLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKL 81 (393)
T ss_pred cchhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHH
Confidence 34799999999999988888888777778899999999999998899999999888766678999999999999999999
Q ss_pred HhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 146 ~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
.+.+|..+++++|++|+|+++++..++.+++++||.|++++|+|..|..+++..|++++.+++++++++.+|++.+++.+
T Consensus 82 ~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 161 (393)
T PRK05764 82 KRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAI 161 (393)
T ss_pred HHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhh
Confidence 99888878899999999999999999999999999999999999999999999999999999986677889999999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC-CCCCCceEEEeccChhc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAF 304 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~ 304 (429)
+++++++++++|+||||.+++.+++++|+++|++| ++++|+||+|.++.|++....++..+ ....+++++++||||.+
T Consensus 162 ~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 240 (393)
T PRK05764 162 TPKTKALILNSPSNPTGAVYSPEELEAIADVAVEH-DIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAY 240 (393)
T ss_pred CccceEEEEECCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccc
Confidence 88899999999999999999999999999999999 99999999999998866444455554 33457899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
+++|+|+||+++++++++.+.........+++.+.|.++..+|+. ..++++++++.++++++.+.+.|++++|+.+.
T Consensus 241 ~~~G~RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~ 317 (393)
T PRK05764 241 AMTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG---PQDEVEEMRQAFEERRDLMVDGLNEIPGLECP 317 (393)
T ss_pred cCccceeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHHHHHhhCCCCccc
Confidence 999999999999999999998887777778899999999999974 36888999999999999999999998889988
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+|++|+|++++..... .+ .++.+++++|++++||.+
T Consensus 318 ~~~g~~~~~~~~~~~~~~--~~----~~~~~~~~~l~~~~gi~v 355 (393)
T PRK05764 318 KPEGAFYVFPNVSKLLGK--SI----TDSLEFAEALLEEAGVAV 355 (393)
T ss_pred CCCcceEEEEeccccccc--cc----CCHHHHHHHHHHhCCEEE
Confidence 999999999999753110 00 135899999998889986
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=395.92 Aligned_cols=345 Identities=25% Similarity=0.395 Sum_probs=303.8
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
+++|+..+.++.+.++.+.+.+....+.+.|+|+.|+|++.+++.+.+++.+.+.. ....|++..|.++||+++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 81 (386)
T PRK07550 2 LNPLIAALFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYS 81 (386)
T ss_pred cchhhhhcCChHHHHHHHHHHHHhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHH
Confidence 56777777888888888888888778888999999999988888999998887653 34679888999999999999999
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..+...++..|++++.+++++++++.+|++.++++++
T Consensus 82 ~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~ 161 (386)
T PRK07550 82 RLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT 161 (386)
T ss_pred HHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc
Confidence 99998889999999999999999999999999999999999999999999999999999999866778899999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++.......+++++++||||.+|+
T Consensus 162 ~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~-~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~ 240 (386)
T PRK07550 162 PRTRAIALVTPNNPTGVVYPPELLHELYDLARRH-GIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYAL 240 (386)
T ss_pred ccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccC
Confidence 8999999999999999999999999999999999 999999999999876543333333322235689999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+.......+++.++|.++..++.. .++|+++.++.++++++.+.+.|.+++++.+ .+
T Consensus 241 ~G~RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~ 316 (386)
T PRK07550 241 TGHRVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRAGNRAEIARRRDAFRAVFARLPGWEL-LA 316 (386)
T ss_pred cccceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee-CC
Confidence 9999999999999999998887777778899999999999975 4788899999999999999999998766655 47
Q ss_pred CceEEEEEecCC-ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFST-YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++|+|++++. . .++.+++++|++++||.|
T Consensus 317 ~g~~~~~~~~~~~~-----------~~~~~l~~~l~~~~gv~v 348 (386)
T PRK07550 317 SGAYFAYVRHPFPD-----------RPSREVARRLAKEAGILC 348 (386)
T ss_pred CceEEEEecCCCCC-----------CCHHHHHHHHHHhcCEEE
Confidence 799999999974 2 378899999998889976
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=393.12 Aligned_cols=342 Identities=30% Similarity=0.537 Sum_probs=295.5
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHK 144 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~ 144 (429)
|++++++..+.+..+..+.+... ...+.++|+.|+|++++|+.+.+++.+.+... ...|.+..|.+++|++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~ 77 (389)
T PRK05957 2 TQFTSRMDAVQSPIIPVVGQLIR----ENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQK 77 (389)
T ss_pred chhhHHHHhcCCcHHHHHHHHHH----hCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHH
Confidence 34677777777665544433332 23568999999999999999999998877542 35799999999999999999
Q ss_pred HHhhcCCCCC-CCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh
Q 014172 145 LKEENGLSYT-PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 145 l~~~~g~~~~-~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
+.+.+|.+++ +++|++|+|+++++..++.+++++||+|++++|+|..+...++..|++++.++.+ +++.+|++++++
T Consensus 78 l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~ 155 (389)
T PRK05957 78 LQQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAIEQ 155 (389)
T ss_pred HHHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHHHH
Confidence 9998898777 6799999999999999999999999999999999999999999999999999874 457799999999
Q ss_pred hcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 224 ~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
++++++|+|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++....+...+....+++|+++||||.
T Consensus 156 ~i~~~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 234 (389)
T PRK05957 156 AITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEH-GIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKA 234 (389)
T ss_pred hcCcCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhh
Confidence 9998999999999999999999999999999999999 999999999999988754333444444445789999999999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc-e
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV-K 382 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~-~ 382 (429)
||++|+|+||+++++++++.+.........+++.+.|.++..+|+. ..+++++.++.++++|+.+.+.|++++++ .
T Consensus 235 ~g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 311 (389)
T PRK05957 235 YGFASWRIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQV---GKSYCQQHLPEIAQVRQILLKSLGQLQDRCT 311 (389)
T ss_pred ccCccceeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999887777778899999999999986 45788888899999999999999988774 7
Q ss_pred eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 383 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+|+||||+|++++.. .++.+++++|++++||.|
T Consensus 312 ~~~~~gg~~~~~~~~~~-----------~~~~~~~~~l~~~~gv~v 346 (389)
T PRK05957 312 LHPANGAFYCFLKVNTD-----------LNDFELVKQLIREYRVAV 346 (389)
T ss_pred ccCCCeeEEEEEeCCCC-----------CChHHHHHHHHHHCCEEE
Confidence 77899999999999743 378899999998789986
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=396.63 Aligned_cols=325 Identities=22% Similarity=0.398 Sum_probs=276.0
Q ss_pred cCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 93 AGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 93 ~g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
.++++|+|+.|+|+ +++|+.+.+++.+++... ..+|++..|.++||++|++++.+.+|..+++++|++|+|++++
T Consensus 30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~a 109 (409)
T PLN00143 30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHA 109 (409)
T ss_pred CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHH
Confidence 56789999999998 899999999999988754 4679999999999999999999998988999999999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCH
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~ 247 (429)
+.+++++++++||.|++++|+|+.|...++..|++++.+++.++++|.+|++.++++++++++++++++||||||.+++.
T Consensus 110 l~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~ 189 (409)
T PLN00143 110 AEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSY 189 (409)
T ss_pred HHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCH
Confidence 99999999999999999999999999999999999999998766778899999999988889999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc--CHHHH----
Q 014172 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG--PKHFV---- 321 (429)
Q Consensus 248 ~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~--~~~~~---- 321 (429)
+++++|+++|++| +++||+||+|.++.|++....++..+.. .+++|+++||||.|+++|+|+||+++ ++.++
T Consensus 190 ~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~~~~~~ 267 (409)
T PLN00143 190 EHLNKIAETARKL-GILVIADEVYGHIVFGSKPFVPMGLFAS-IVPVITLGSISKRWMIPGWGLGWLVTCDPSGLLQICE 267 (409)
T ss_pred HHHHHHHHHHHHc-CCeEEEEccccccccCCCCCcchhhhcc-cCcEEEEccchhhcCCCccceEEEEeeCchhhhhhHH
Confidence 9999999999999 9999999999999987644344444432 46899999999999999999999998 33343
Q ss_pred --HHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEEEecCC
Q 014172 322 --AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFST 398 (429)
Q Consensus 322 --~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~~~l~~ 398 (429)
+.+.+.... ...++.+.|.++..+|+.+ ...++++.++.++++++.+.+.|+++++.. +..|+||||+|++++.
T Consensus 268 ~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~ 344 (409)
T PLN00143 268 IADSIKKALNP-APFPPTFIQAAIPEILEKT--TEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNL 344 (409)
T ss_pred HHHHHHHHHhc-cCCCCchHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecch
Confidence 333333322 2335789999999999752 267899999999999999999999885544 3478999999999974
Q ss_pred ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 399 YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
... .+..++.+++.+|+++.||.+
T Consensus 345 ~~~------~~~~~~~~~~~~ll~~~gV~v 368 (409)
T PLN00143 345 LLL------EDIEDDMEFCLKLAKEESLII 368 (409)
T ss_pred hhc------CCCCCHHHHHHHHHHhCCEEE
Confidence 200 011257889988988889986
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=397.36 Aligned_cols=326 Identities=22% Similarity=0.416 Sum_probs=282.1
Q ss_pred hcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 92 QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
..|+++|+|+.|+|+ +++|+.+.+++.+++... ..+|++..|.++||+++++++.+.+|..+++++|++|+|+++
T Consensus 28 ~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~ 107 (409)
T PLN02656 28 ENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQ 107 (409)
T ss_pred ccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHH
Confidence 467899999999998 788999999999988754 568999999999999999999998898899999999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCC
Q 014172 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 167 al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~ 246 (429)
++.+++.+++++||+|++++|+|+.|...++..|++++.+++.++++|.+|++.+++.++++++++++++||||||.+++
T Consensus 108 al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s 187 (409)
T PLN02656 108 AIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYS 187 (409)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999976667889999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC--------H
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP--------K 318 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~--------~ 318 (429)
.+++++|+++|++| +++||+||+|.++.|++....++..+.. .+++|+++||||.|+++|+|+||++++ +
T Consensus 188 ~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~f~~pGlRiG~~i~~~~~~~~~~~ 265 (409)
T PLN02656 188 YQHLKKIAETAEKL-KILVIADEVYGHLAFGSNPFVPMGVFGS-IVPVLTLGSLSKRWIVPGWRLGWFVTTDPSGSFRDP 265 (409)
T ss_pred HHHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCcccHHHhcc-cCcEEEEcccchhccCcceeEEEEEEeCcccccccH
Confidence 99999999999999 9999999999999997754445544433 478999999999999999999999984 5
Q ss_pred HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEEEecC
Q 014172 319 HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFS 397 (429)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~~~l~ 397 (429)
++++.+.+.... ..+++.+.|.++..+|+.+ .++++++.++.++++|+.+.+.|++++++. +.+|+||||+|++++
T Consensus 266 ~~~~~~~~~~~~-~~~~s~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~ 342 (409)
T PLN02656 266 KIVERIKKYFDI-LGGPATFIQAAVPTILEQT--DESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLN 342 (409)
T ss_pred HHHHHHHHHHhh-hcCCCHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecc
Confidence 788888776554 3467899999999999752 257899999999999999999999886554 357999999999997
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.... ....++.+++.+++++.||.|
T Consensus 343 ~~~~------~~~~~~~~~~~~~l~~~gV~v 367 (409)
T PLN02656 343 LSLL------EDISDDIDFCFKLAREESVII 367 (409)
T ss_pred hhhc------CCCCCHHHHHHHHHHhCCEEE
Confidence 3200 001246678878888889986
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=392.42 Aligned_cols=340 Identities=37% Similarity=0.643 Sum_probs=296.9
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+++++..+.++.+......+ ...+++|+|+.|.|++++++.+.+++.+.+......|++..|..+||+++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 80 (387)
T PRK07683 5 INPRVKDIQISGIRQFSNMV----QNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKD 80 (387)
T ss_pred hhHHHHhCCccHHHHHHHHH----HhcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 46778777777665554443 23457899999999988888999999998876667898899999999999999998
Q ss_pred hcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+|+.++++ +|++|+|+++++.+++.+++++||+|++++|+|..|...++..|++++.++.+. +++.+|++.+++.++
T Consensus 81 ~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~ 159 (387)
T PRK07683 81 KYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEALENAIT 159 (387)
T ss_pred HhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHHHHHhcC
Confidence 889888898 999999999999999999999999999999999999999999999999999864 567889999999998
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++. ..++.++.+..+++++++||||.||+
T Consensus 160 ~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~s~SK~~~~ 237 (387)
T PRK07683 160 EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDK-NIFVLSDEIYSELVYEQP-HTSIAHFPEMREKTIVINGLSKSHSM 237 (387)
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CeEEEEecccccceeCCC-cCChhhccCCcCCeEEEeeccccccC
Confidence 8999999999999999999999999999999999 999999999999988653 34556654446789999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+.......+++.+.|.++..+|.. ...+++..++.|+++++.+.+.|+++ |+.+.+|
T Consensus 238 pGlRiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ 313 (387)
T PRK07683 238 TGWRIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTA---GKDDAKMMRHQYKKRRDYVYNRLISM-GLDVEKP 313 (387)
T ss_pred ccceeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCC
Confidence 9999999999999999988776544566788999999999986 45678889999999999999999987 8888899
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+||||+|+.++.. + .++.+++.+|++++||.|
T Consensus 314 ~~~~~~~~~~~~~-~---------~~~~~~~~~ll~~~gI~v 345 (387)
T PRK07683 314 TGAFYLFPSIGHF-T---------MSSFDFALDLVEEAGLAV 345 (387)
T ss_pred CeeEEEEEecccC-C---------CCHHHHHHHHHHhCCEEE
Confidence 9999999998752 0 267789999888889976
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=395.07 Aligned_cols=345 Identities=33% Similarity=0.539 Sum_probs=292.4
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 144 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~ 144 (429)
+++++..++ +.+.++....++.+.+|.++|+|+.|.| ++++|+.+.+++.+.+......|++..|..+||++++++
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 82 (398)
T PRK08363 4 ASERAMGVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKR 82 (398)
T ss_pred hhHHHHhcc-HHHHHHHHHHHHHHhcCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHH
Confidence 445555554 3455666666666677889999999999 788889999999998876556798899999999999999
Q ss_pred HHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh
Q 014172 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (429)
Q Consensus 145 l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 224 (429)
+.+.+|+.+++++|++|+|+++++.+++.+++++||+|++++|+|..|...++..|++++.++...++++.+|++.+++.
T Consensus 83 ~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~ 162 (398)
T PRK08363 83 EKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKK 162 (398)
T ss_pred HHHhcCCCCChhhEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhh
Confidence 99989988999999999999999999999999999999999999999999999999999988433345678999999999
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
++++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|.+. ..++.++.. ..++++++||||.|
T Consensus 163 ~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~li~Deay~~~~~~~~-~~~~~~~~~-~~~vi~~~SfSK~~ 239 (398)
T PRK08363 163 ITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEH-DLPVISDEIYDLMTYEGK-HVSPGSLTK-DVPVIVMNGLSKVY 239 (398)
T ss_pred CCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CeEEEEhhhhhhhccCCc-ccCHHHcCc-CCcEEEEecchhcc
Confidence 988999999999999999999999999999999999 999999999999888653 334555543 46899999999999
Q ss_pred ccccceeeEEEc--CHHHHHHHHHHhhc---ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 305 AMTGWRLGYIAG--PKHFVAACNKIQSQ---FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 305 ~~~G~R~G~v~~--~~~~~~~l~~~~~~---~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
+++|+|+||+++ ++++++.+...... ...+++.+.|.++..+|.. ..+++++.++.++++|+.+.+.|.+++
T Consensus 240 ~~~GlRiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~l~~~~~~~~~~~~~l~~~L~~~~ 316 (398)
T PRK08363 240 FATGWRLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG---PMDYLEEYMKKLKERRDYIYKRLNEIP 316 (398)
T ss_pred CCccceEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999997 77777666544321 2356899999999999975 478999999999999999999999988
Q ss_pred CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+..|+||||+|++++... ..++.+++.++++++||.|
T Consensus 317 ~~~~~~p~g~~~~~~~l~~~~---------~~~~~~~~~~~l~~~gV~v 356 (398)
T PRK08363 317 GISTTKPQGAFYIFPRIEEGP---------WKDDKEFVLDVLHEAHVLF 356 (398)
T ss_pred CCEecCCCeEEEEEEEeccCC---------CCCHHHHHHHHHHhCCEEE
Confidence 888889999999999997520 0256788888888889976
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=392.93 Aligned_cols=340 Identities=33% Similarity=0.580 Sum_probs=296.1
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhc
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEEN 149 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~ 149 (429)
++++.++++.+.++...+.+ .++|+|+.|.|+.+.|+.+.+++.+.+.....+|++..|.++||+++++++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~ 78 (387)
T PRK07777 4 SRLRPFGTTIFAEMSALAVR-----TGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRY 78 (387)
T ss_pred hhhhhcCccHHHHHHHHHhh-----CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45666777766666555532 3689999999998888888888888877666789988999999999999999989
Q ss_pred CCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhccc
Q 014172 150 GLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTE 227 (429)
Q Consensus 150 g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~~ 227 (429)
|.+++++ +|++|+|+++++.+++.+++++||+|+++.|+|..|...++..|++++.++++++ ++|.+|++++++.+.+
T Consensus 79 g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 158 (387)
T PRK07777 79 GLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVTP 158 (387)
T ss_pred CCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcCc
Confidence 9888786 7999999999999999999999999999999999999999999999999998765 4688999999999988
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
++++|++++||||||.+++.+++++|+++|++| ++++|+||+|.++.|++..+.++..+++..+++++++||||.||++
T Consensus 159 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (387)
T PRK07777 159 RTRALIVNSPHNPTGTVLTAAELAAIAELAVEH-DLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVT 237 (387)
T ss_pred ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhc-CcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCc
Confidence 999999999999999999999999999999999 9999999999999987655555655554467899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.........+.+.+.|.++..++.. .+.|++.+++.++++++.+.+.|+++ |+++.+|+
T Consensus 238 GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~ 313 (387)
T PRK07777 238 GWKIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDH---EDAWVAALRDSLQAKRDRLAAGLAEA-GFEVHDSA 313 (387)
T ss_pred CceeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHhC-CCCccCCC
Confidence 999999999999999988877656666788899888888876 46889999999999999999999997 88888999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+||+|++++.. + ..++.+|+++|++++||.|
T Consensus 314 g~~~~~~~~~~~-~--------~~~~~~~~~~l~~~~gv~v 345 (387)
T PRK07777 314 GTYFLCADPRPL-G--------YDDGTEFCRALPERVGVAA 345 (387)
T ss_pred cceEEEeccccc-C--------CCCHHHHHHHHHHhCCEEE
Confidence 999999998632 0 1267899999998889986
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=397.13 Aligned_cols=317 Identities=22% Similarity=0.295 Sum_probs=283.5
Q ss_pred HHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 87 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 87 ~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
+.++...+.++++|+.|+|++.+|+.+ +++.+++.+...+|++..|.++||++|++++. + +++++|++|+|+++
T Consensus 18 ~~~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~---~--~~~~~vi~t~G~~~ 91 (373)
T PRK07324 18 SATYDIAESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQ---N--VKPENILQTNGATG 91 (373)
T ss_pred cCccccccCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhc---C--CChhhEEEcCChHH
Confidence 334444677899999999999998888 88888888777899999999999999999984 2 57899999999999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCC
Q 014172 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 167 al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~ 246 (429)
++.+++.+++++||+|+++.|+|..+...++..|++++.+|++.+++|.+|++++++.+++++|++++++||||||.+++
T Consensus 92 al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~ 171 (373)
T PRK07324 92 ANFLVLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMD 171 (373)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999987778889999999999899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~ 326 (429)
.+++++|+++|++| |++||+||+|.++.+++. ..++... .+++|+++||||.||++|+|+||+++++++++.+.+
T Consensus 172 ~~~l~~i~~~a~~~-~~~ii~De~y~~l~~~~~-~~s~~~~---~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~ 246 (373)
T PRK07324 172 RAYLEEIVEIARSV-DAYVLSDEVYRPLDEDGS-TPSIADL---YEKGISTNSMSKTYSLPGIRVGWIAANEEVIDILRK 246 (373)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEccccccccCCC-CCChhhc---cCCEEEEecchhhcCCccceeEEEecCHHHHHHHHH
Confidence 99999999999999 999999999999888643 3344333 478899999999999999999999999999999999
Q ss_pred HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccC
Q 014172 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (429)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~ 406 (429)
.+.....+++.++|.++..+|+. .+.+++++++.++++++.+.+.|++.+++.+..|++|+|+|+.++..
T Consensus 247 ~~~~~~~~~~~~~q~~a~~~l~~---~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~gg~~~~i~~~~~------- 316 (373)
T PRK07324 247 YRDYTMICAGVFDDMLASLALEH---RDAILERNRKIVRTNLAILDEWVAKEPRVSYVKPKAVSTSFVKLDVD------- 316 (373)
T ss_pred HhCcEEecCChHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECCCceEEEEEEeCCC-------
Confidence 88777778899999999998875 46788999999999999999999988788999999999999988742
Q ss_pred CCCCCChHHHHHHHHHhCCeec
Q 014172 407 FGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 407 ~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+|+++|++++||.|
T Consensus 317 ----~~~~~~~~~ll~~~gv~v 334 (373)
T PRK07324 317 ----MPSEDFCLKLLKETGVLL 334 (373)
T ss_pred ----CCHHHHHHHHHHhcCEEE
Confidence 378899999998889976
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-49 Score=391.76 Aligned_cols=342 Identities=33% Similarity=0.571 Sum_probs=291.7
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l 145 (429)
..+++++..........+.+.. ...+++|+|+.|+|++.+|+.+.+++.+.+......|++..|.++||+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~ 80 (391)
T PRK07309 5 KRFNKQLDKIEVSLIRQFDQSI----SDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFV 80 (391)
T ss_pred hHHHhhhhhcCccHHHHHHHHH----HhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHH
Confidence 3456777776666554444322 222569999999999998999999999888765667999999999999999999
Q ss_pred HhhcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh
Q 014172 146 KEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (429)
Q Consensus 146 ~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 224 (429)
.+.+|+.+.+ ++|++|+|+++++.+++++++++||+|++++|+|..|...++..|++++.++.+. +++.+|++.++++
T Consensus 81 ~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~ 159 (391)
T PRK07309 81 KEKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPEMLEKA 159 (391)
T ss_pred HHHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHHHHHHH
Confidence 9888987775 7999999999999999999999999999999999999999999999999999753 4578999999998
Q ss_pred ccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccC
Q 014172 225 LTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (429)
Q Consensus 225 l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (429)
++. +++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++..+.++..+. .+++|+++|||
T Consensus 160 ~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~-~~~ii~D~~y~~~~~~~~~~~~~~~~~--~~~~i~~~S~S 236 (391)
T PRK07309 160 ILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKY-DIFVISDEVYSELTYTGEPHVSIAEYL--PDQTILINGLS 236 (391)
T ss_pred hhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEccccceeeCCCCCCCHHHhc--cCCEEEEecCh
Confidence 863 689999999999999999999999999999999 999999999999998665455555443 47899999999
Q ss_pred hhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 014172 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (429)
Q Consensus 302 K~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~ 381 (429)
|.||++|+|+||+++++++++.+.........+++.+.|.++..+|++ ...+....++.|+++|+.+.+.|++. |+
T Consensus 237 K~~g~~GlRvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 312 (391)
T PRK07309 237 KSHAMTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTN---GKDDALPMKKEYIKRRDYIIEKMTDL-GF 312 (391)
T ss_pred hhccCccceeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 999999999999999999999998776555567899999999999986 34455678889999999999999988 89
Q ss_pred eeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 382 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..|++|||+|+++|.... .++.+++++|+++.||.|
T Consensus 313 ~~~~p~gg~~~~~~l~~~~~---------~~~~~~~~~l~~~~gv~v 350 (391)
T PRK07309 313 KIIKPDGAFYIFAKIPAGYN---------QDSFKFLQDFARKKAVAF 350 (391)
T ss_pred eecCCCeeEEEEEECCCCCC---------CCHHHHHHHHHHhCCEEE
Confidence 99899999999999985311 257889999888889986
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=395.86 Aligned_cols=351 Identities=25% Similarity=0.432 Sum_probs=290.0
Q ss_pred cccccCcccccccCCchhHHHHHHHHHHH--hcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHc-CCCCCCCCCCCH
Q 014172 63 QVDVSLSPRVNAVKPSKTVAITDQATALA--QAGVSVIRLAAGEPD----FDTPVLIAEAGINAIRE-GFTRYTPNAGTL 135 (429)
Q Consensus 63 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~ 135 (429)
+|+...+.+........... ..++. ..++++|+|+.|.|+ +.+|+.+.+++.+.+.. ...+|++..|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~ 78 (412)
T PTZ00433 3 FWDVSMSKHAGRVFNPLRTV----TDNAKPSPSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSP 78 (412)
T ss_pred cccccccHHHHhhhccHHHH----HHhhccCCCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcH
Confidence 35555566665544332222 22333 367789999999987 45788999999888764 347898888999
Q ss_pred HHHHHHHHHHHhhc------CCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC
Q 014172 136 ELRSAICHKLKEEN------GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 209 (429)
Q Consensus 136 ~lr~~ia~~l~~~~------g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 209 (429)
+||++|++++++.+ |..+++++|++|+|+++++.+++.+++++||+|+++.|+|..|...++..|++++.++++
T Consensus 79 ~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~ 158 (412)
T PTZ00433 79 EAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCR 158 (412)
T ss_pred HHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecC
Confidence 99999999998765 456889999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
++++|.+|++++++.+++++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++....++..+..
T Consensus 159 ~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~ 237 (412)
T PTZ00433 159 PEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEEL-RLPLISDEIYAGMVFNGATFTSVADFDT 237 (412)
T ss_pred ccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CCeEEEeccccccccCCCCccchhhccC
Confidence 666788999999999988999999999999999999999999999999999 9999999999999987654455666643
Q ss_pred CCCceEEEeccChhcccccceeeEEEc--C----HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAG--P----KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~--~----~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
..++|+++||||.||++|+|+||+++ + +++++.+.+... ...+++.+.|.++..++... .+.++++.++.
T Consensus 238 -~~~~i~~~SfSK~~~~pGlRlG~~i~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~~~~~~~~~ 313 (412)
T PTZ00433 238 -TVPRVILGGTAKNLVVPGWRLGWLLLVDPHGNGGDFLDGMKRLGM-LVCGPCSVVQAALGEALLNT--PQEHLEQIVAK 313 (412)
T ss_pred -CCceEEEccchhhcCCCCeeEEEEEEeCCcccHHHHHHHHHHHhh-ccCCCChHHHHHHHHHHhcC--cHHHHHHHHHH
Confidence 24689999999999999999999997 2 457777766543 23468999999999999752 36889999999
Q ss_pred HHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+.+.+.|+++.|+.+..|++|+|+|++++... .....++.+++++|++++||.|
T Consensus 314 ~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~------~~~~~~~~~~~~~ll~~~gV~v 372 (412)
T PTZ00433 314 LEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEK------FRDIKSDVEFYEKLLEEENVQV 372 (412)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhh------cCCCCCHHHHHHHHHHhcCEEE
Confidence 9999999999999866888889999999999997410 0001257899999998779976
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=390.62 Aligned_cols=343 Identities=31% Similarity=0.555 Sum_probs=295.7
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
++++++..+.++.+.++...+.+....|.++|+|+.|.|++++|+.+.+++.+... ....|++..|.+++|+++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~ 80 (397)
T PRK07568 2 KISKRVLNMPASPIRKLVPYADEAKKRGIKVYHLNIGQPDIKTPEVFFEAIKNYDE-EVLAYSHSQGIPELREAFAKYYK 80 (397)
T ss_pred chhhHhhhCCcchHHHHHHHHHHHHhhCCCEEEecCCCCCCCCCHHHHHHHHHHhc-CCcCcCCCCCCHHHHHHHHHHHH
Confidence 46677777777777777666555445567799999999999889999998877653 45789999999999999999998
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCC-CHHHHHhhc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL-DPKVLESKL 225 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-d~e~l~~~l 225 (429)
.+|..+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.++++.++++.+ +++.+++++
T Consensus 81 -~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~ 159 (397)
T PRK07568 81 -KWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLI 159 (397)
T ss_pred -HhCCCCCcceEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhc
Confidence 578778899999999999999999999999999999999999999999999999999999875555553 689999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
++++++|++++||||||.+++.+++++|+++|+++ +++||+||+|.++.|++....++.++....+++++++||||.||
T Consensus 160 ~~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~ 238 (397)
T PRK07568 160 TPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKH-DLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYS 238 (397)
T ss_pred CccceEEEEECCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhcc
Confidence 88999999999999999999999999999999999 99999999999998876555566666554689999999999999
Q ss_pred cccceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 306 MTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 306 ~~G~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
++|+|+||++++ +++++.+.+.... ..+++.+.|.++..+|+. .+++++++++.|+++++.+.+.|++++|+.+.
T Consensus 239 ~~G~R~G~~~~~~~~~~~~~~~~~~~-~~~~s~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 314 (397)
T PRK07568 239 ACGARIGCLISKNKELIAAAMKLCQA-RLSPPTLEQIGAAALLDT---PESYFDEVREEYKKRRDILYEELNKIPGVVCE 314 (397)
T ss_pred CCCcceEEEecCCHHHHHHHHHHhhc-cCCCCcHHHHHHHHHhhC---CHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 999999999985 6888887665443 457899999999999986 47889999999999999999999998788888
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHh-----CCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~-----~gV~v 428 (429)
.|+||||+|++++.. ++.+++++|+++ .||.+
T Consensus 315 ~p~g~~~~~~~l~~~------------~~~~~~~~l~~~~~~~~~gv~v 351 (397)
T PRK07568 315 KPKGAFYIIAKLPVD------------DAEDFAKWLLTDFNYNGETVMV 351 (397)
T ss_pred CCCcceEEEEecCCC------------CHHHHHHHHHhhcccccceEEE
Confidence 999999999999742 678999999875 57765
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=387.95 Aligned_cols=324 Identities=22% Similarity=0.346 Sum_probs=277.1
Q ss_pred cCCchhHHHHHHHHHHHhc-CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Q 014172 75 VKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY 153 (429)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~-g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~ 153 (429)
+.++.+.++.+.+.++..+ |.++|+|+.|+|++++|+.+.+++.+... ....|++..|..+||+++++++++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~-~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~ 81 (374)
T PRK05839 3 FEPYPFEKLRELLKEITPNKEYKGLDLTIGEPQFETPKFIQDALKNNAH-LLNKYPKSAGEESLREAQRGFFKRRFKIEL 81 (374)
T ss_pred CCcchHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHHHHHHHhh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3556777887888888777 77999999999999999888888887653 357898889999999999999999999888
Q ss_pred CCCcEEEecChHHHHHHHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcE
Q 014172 154 TPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 231 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~ 231 (429)
++++|++|+|+++++..++.+++ ++||.|+++.|+|+.|...++..|++++.++++.+++|.+|++..+ + +++|+
T Consensus 82 ~~~~I~it~G~~~al~~~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~k~ 158 (374)
T PRK05839 82 KENELIPTFGTREVLFNFPQFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEVDL 158 (374)
T ss_pred CcceEEEecCcHHHHHHHHHHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccccE
Confidence 99999999999999998888775 4789999999999999999999999999999987777878776543 2 46899
Q ss_pred EEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC-----CCCCCceEEEeccChhccc
Q 014172 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-----PGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 232 i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~-----~~~~~~~i~~~S~SK~~~~ 306 (429)
|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ..+++... ....+++|+++||||.|++
T Consensus 159 v~i~nP~NPTG~~~s~~~l~~i~~~~~~~-~~~ii~DE~Y~~~~~~~-~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 236 (374)
T PRK05839 159 VILNSPNNPTGRTLSLEELIEWVKLALKH-DFILINDECYSEIYENT-PPPSLLEASILVGNESFKNVLVINSISKRSSA 236 (374)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHc-CCEEEeccchhhcccCC-CCCCHhhhhcccCccccCcEEEEeccccccCC
Confidence 99999999999999999999999999999 99999999999976543 23343322 1234799999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+.......+.+.+.|.++..++.. ++++++.++.++++|+.+.+.| ++. .|
T Consensus 237 ~GlRiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l----~~~--~p 306 (374)
T PRK05839 237 PGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWLD----DEHAEFFRNIYAKNLKLAREIL----GIT--IP 306 (374)
T ss_pred ccceeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHhc----CCC--CC
Confidence 9999999999999999998877666667899999999888864 6788999999999999888765 333 68
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|++++ +..+++++|++++||.|
T Consensus 307 ~gg~fi~~~~~--------------~~~~~~~~l~~~~gi~v 334 (374)
T PRK05839 307 PATFYVWLPVD--------------NDEEFTKKLYQNEGIKV 334 (374)
T ss_pred CeeEEEEEeCC--------------ChHHHHHHHHHHCCEEE
Confidence 99999999986 45789999998789976
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=389.16 Aligned_cols=340 Identities=26% Similarity=0.410 Sum_probs=290.7
Q ss_pred cccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCC
Q 014172 73 NAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGL 151 (429)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~ 151 (429)
..+.++.+..+.+.+...++.|+++++|+.|+|+..+|+.+.+++.+.+.. ....|++..|.++||+++++++.+.+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~ 86 (395)
T PRK08175 7 DRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDV 86 (395)
T ss_pred hcCCchHHHHHHHHHHHHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 334444443444555666667889999999999988888888888776643 3578999999999999999999998898
Q ss_pred CCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc---c
Q 014172 152 SYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---E 227 (429)
Q Consensus 152 ~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~---~ 227 (429)
.++++ +|++|+|+++++.+++..++++||+|++++|+|+.+...++..|++++.++++.+++ +++.++++++ +
T Consensus 87 ~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~ 163 (395)
T PRK08175 87 DIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESYP 163 (395)
T ss_pred CCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhccC
Confidence 88887 899999999999999999999999999999999999999999999999999876543 4778877775 4
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
+++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++....++.+++...+++++++||||.||++
T Consensus 164 ~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~p 242 (395)
T PRK08175 164 KPKMMILGFPSNPTAQCVELEFFEKVVALAKRY-DVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMA 242 (395)
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCc
Confidence 789999999999999999999999999999999 9999999999999887655566666654457889999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.+.......+++.+.|.++..++.. .+++++.+++.|+++++++.+.|+++ |+.+..|+
T Consensus 243 GlRiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~ 318 (395)
T PRK08175 243 GWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRDIAEQYKRRRDVLVKGLHEA-GWMVEMPK 318 (395)
T ss_pred chhheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCCC
Confidence 999999999999999998887766777888899999999975 46789999999999999999999998 88888899
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+|+|++++..+. ..++.+++.+|++++||.|
T Consensus 319 ~g~~i~i~l~~~~~--------~~~~~~~~~~l~~~~gv~v 351 (395)
T PRK08175 319 ASMYVWAKIPEPYA--------AMGSLEFAKKLLNEAKVCV 351 (395)
T ss_pred EEEEEEEECCcccC--------CCCHHHHHHHHHHhCCEEE
Confidence 99999999986311 0257899999998889986
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=389.31 Aligned_cols=337 Identities=24% Similarity=0.406 Sum_probs=283.4
Q ss_pred hHHHHHHHHHHHhcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q 014172 80 TVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 80 ~~~~~~~~~~~~~~g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
+..+.+........++++|+|+.|+|+ +++++.+.+++.+.+... ...|++..|..+||+++++++.+. +..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~ 94 (401)
T TIGR01264 16 IRAIVDNMKVKPNPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIE 94 (401)
T ss_pred HHHHHHHHHhhhhcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCC
Confidence 344555555555567789999999985 777899999998887654 457999999999999999999864 55688
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEE
Q 014172 155 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l 234 (429)
+++|++|+|+++++.+++.+++++||+|++++|+|..|...++..|++++.++++.++++.+|++.+++.++++++++++
T Consensus 95 ~~~i~~t~G~~~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~ 174 (401)
T TIGR01264 95 ADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIV 174 (401)
T ss_pred HHHEEECcChHHHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999876667889999999998888999999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEE
Q 014172 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314 (429)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v 314 (429)
++||||||.+++.+++++|+++|+++ +++||+||+|.+|.|++....++..+.. ..++|+++||||.|+++|+|+||+
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~SfSK~~~~~GlRiG~i 252 (401)
T TIGR01264 175 NNPSNPCGSVFSRQHLEEILAVAERQ-CLPIIADEIYGDMVFSGATFEPLASLSS-TVPILSCGGLAKRWLVPGWRLGWI 252 (401)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEhhhhhhccCCcccccHHHcCC-CCcEEEEccCcccCCCccceEEEE
Confidence 99999999999999999999999999 9999999999999987654556666543 346899999999999999999999
Q ss_pred EcCH------HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc
Q 014172 315 AGPK------HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388 (429)
Q Consensus 315 ~~~~------~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~ 388 (429)
++++ ++++.+..... ...+++.+.|.++..+|.+. .++++++.++.++++|+.+.+.|++++|+.+..|++
T Consensus 253 v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~--~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~ 329 (401)
T TIGR01264 253 IIHDRRGILRDIRDGLVKLSQ-RILGPCTIVQGALPSILLRT--PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSG 329 (401)
T ss_pred EecCcchhHHHHHHHHHHHhh-ccCCCCcHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCe
Confidence 9874 34444444432 23567899999999999752 368899999999999999999999987888888999
Q ss_pred eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+|+|++++... .....++.+++++|++++||.|
T Consensus 330 g~f~~~~~~~~~------~~~~~~~~~~~~~l~~~~gI~v 363 (401)
T TIGR01264 330 AMYMMVGIEMEH------FPEFKNDVEFTERLVAEQSVFC 363 (401)
T ss_pred eeEEEEEecccc------cCCCCCHHHHHHHHHHhCCEEE
Confidence 999999986410 0001257899999998889986
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=379.88 Aligned_cols=310 Identities=27% Similarity=0.477 Sum_probs=276.8
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHHHHHHHHh
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l 175 (429)
+++|+.|+|++++|+++.+++.+... ...+|++..|..+||+++++++.+.+|+.++++ +|++|+|+++++..++.++
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~ 80 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVP-EVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVF 80 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHh-ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHH
Confidence 68999999999989999999988764 456898889999999999999999999988887 9999999999999999999
Q ss_pred cCCC---CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 176 CSPG---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 176 ~~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
+++| |+|+++.|+|+.|...++..|++++.++++.+++|.+|++.+++++.++++++++++||||||.+++.+++++
T Consensus 81 ~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~ 160 (350)
T TIGR03537 81 IDPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKE 160 (350)
T ss_pred cCCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHH
Confidence 9887 6999999999999999999999999999976677889999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhccc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~ 332 (429)
|+++|++| |++||+||+|.++.+++ ...++..+. .+++|+++||||.+|++|+|+||+++++++++.+......+.
T Consensus 161 l~~~a~~~-~~~ii~De~y~~~~~~~-~~~~~~~~~--~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~~ 236 (350)
T TIGR03537 161 TIAMCREH-GIILCSDECYTEIYFGE-PPHSALEVG--IENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANFG 236 (350)
T ss_pred HHHHHHHc-CcEEEEeccccccccCC-CCCchhhcC--cCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhhc
Confidence 99999999 99999999999887754 333444432 478999999999999999999999999999999998877777
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCC
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 412 (429)
.+.+.+.|.++..++.. ++++++.++.++++++.+.+.|++. |+++.+|++|||+|++++.. .+
T Consensus 237 ~~~~~~~q~~~~~~l~~----~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~g~~~~~~~~~~~-----------~~ 300 (350)
T TIGR03537 237 VASPDFVQAAAKAAWSD----DNHVLERRKIFKRKRDLFIEFFNKV-GLEYLYPDATFYLWVKVPSG-----------ID 300 (350)
T ss_pred cCCCHHHHHHHHHHhCC----cHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeEEEEEEECCCC-----------CC
Confidence 77777888888888764 6788899999999999999999988 88888999999999999853 36
Q ss_pred hHHHHHHHHHhCCeec
Q 014172 413 SESLCRYLLDKAQVLL 428 (429)
Q Consensus 413 ~~~~~~~Ll~~~gV~v 428 (429)
+.++++.|+++ ||.|
T Consensus 301 ~~~l~~~L~~~-gv~v 315 (350)
T TIGR03537 301 AKDYALRLLEN-GIVV 315 (350)
T ss_pred HHHHHHHHHHC-CEEE
Confidence 78999999875 8876
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-49 Score=393.90 Aligned_cols=340 Identities=17% Similarity=0.161 Sum_probs=267.3
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC-CCCChHHHHHHHHHHH----H-cCCCCCCCCCCCHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDTPVLIAEAGINAI----R-EGFTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~-~~~~p~~v~~a~~~~~----~-~~~~~Y~~~~G~~~lr~~ia~ 143 (429)
.++...+++.++.+.+.+++ ..++++|+|+.|.| ++++|....+++.+++ . ...++|++..|.++||+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~ 83 (404)
T PTZ00376 6 SQVPLGPPDPILGLAAAFKA--DPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQK 83 (404)
T ss_pred hcCCcCCCChHHHHHHHHhh--cCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHH
Confidence 44555666666565555542 22357899999996 5666555555555554 2 234789999999999999999
Q ss_pred HHHhhcCCCCCCCcEE--EecChHHHHHHHHH---HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 144 KLKEENGLSYTPDQIL--VSNGAKQSILQAVL---AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i~--~t~G~~~al~~~l~---~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
|+.+..+..+++++|+ .|.|+++++.+++. +++++||+|++++|+|+.|...++..|++++.+|+.+++++++|+
T Consensus 84 ~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~ 163 (404)
T PTZ00376 84 LLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDF 163 (404)
T ss_pred HhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCH
Confidence 9976666667889998 58999999987765 668999999999999999999999999999999996555688999
Q ss_pred HHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC--CCCccccCCCCCCc
Q 014172 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~--~~~~~~~~~~~~~~ 293 (429)
+.+++.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++. .+.++..+....++
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~ 242 (404)
T PTZ00376 164 DGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRK-NLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVE 242 (404)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCc
Confidence 99999884 3456777899999999999999999999999999 999999999999988641 22234444433568
Q ss_pred eEEEeccChhcccccceeeEE---EcCHHHHHHH----HHHhhcccCCCchHHHHHHHHHHhcCCCCh---HHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYI---AGPKHFVAAC----NKIQSQFTSGASSISQKAGVAALGLGYAGG---EVVSKMVKA 363 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v---~~~~~~~~~l----~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~---~~~~~~~~~ 363 (429)
+|+++||||.|+++|||+||+ ++++++++.+ .+.......+++.++|.++..+|+++...+ +++++.+++
T Consensus 243 vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 322 (404)
T PTZ00376 243 FLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGR 322 (404)
T ss_pred EEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 5788765544 333334445678899999999997621112 335667789
Q ss_pred HHHHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++|+.+.+.|+++. ++.+..|+||||+|++++ .+++++|++++||.+
T Consensus 323 ~~~~r~~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~----------------~~~~~~L~~~~~v~v 374 (404)
T PTZ00376 323 IQNMRQLLYDELKALGSPGDWEHIINQIGMFSFTGLT----------------KEQVERLIEKYHIYL 374 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccccCceEEEecCCC----------------HHHHHHHHHhCCEee
Confidence 9999999999999862 255668999999999873 378999999999985
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=392.08 Aligned_cols=340 Identities=15% Similarity=0.174 Sum_probs=269.6
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCC---CCCCCh--HHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFDTP--VLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~---~~~~~p--~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (429)
+++..++++.+..+...+++.. .+++|+|+.|. |++.+| +.+.+++.+.++. ...+|++..|.++||+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~ 80 (396)
T PRK09257 3 EHLEAAPADPILGLMEAFRADP--RPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQE 80 (396)
T ss_pred ccCCCCCCChHHHHHHHHhhCC--CcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHH
Confidence 4456667776666555444322 24689999996 444445 6788888877654 34579999999999999999
Q ss_pred HHHhhcCCCCCCCcE--EEecChHHHHHHHHHHh--cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHH
Q 014172 144 KLKEENGLSYTPDQI--LVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 219 (429)
++.+..+..+++++| ++|+|+++++.++++++ ++|||+|++++|+|+.|...++..|++++.+|+..++++++|++
T Consensus 81 ~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~ 160 (396)
T PRK09257 81 LLFGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFD 160 (396)
T ss_pred HhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHH
Confidence 998766655678887 99999999999998766 58999999999999999999999999999999844455789999
Q ss_pred HHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC-CCCCccccCCCCCCceE
Q 014172 220 VLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTL 295 (429)
Q Consensus 220 ~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~-~~~~~~~~~~~~~~~~i 295 (429)
.+++.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|+. ....++..+....+++|
T Consensus 161 ~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi 239 (396)
T PRK09257 161 AMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKER-GLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELL 239 (396)
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccchHHHHHHHHHHHhcCCcEE
Confidence 9998875 3345566799999999999999999999999999 99999999999988752 22344444444457899
Q ss_pred EEeccChhcccccceeeEEEc---CHH----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHHHH
Q 014172 296 TVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFR 365 (429)
Q Consensus 296 ~~~S~SK~~~~~G~R~G~v~~---~~~----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~~~ 365 (429)
+++||||.|+++|||+||+++ +++ ++..+.........+++.+.|.++..+|..+.. ..++++++++.|+
T Consensus 240 ~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~ 319 (396)
T PRK09257 240 VASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIK 319 (396)
T ss_pred EEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999973 444 344444444445556789999999999976321 0456788999999
Q ss_pred HHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 366 ERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 366 ~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+.+.+.|+++. ++++..|+||||+|++++ .+++.+|++++||.+
T Consensus 320 ~rr~~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~----------------~~~~~~l~~~~~V~~ 369 (396)
T PRK09257 320 AMRQLLVEALKAKGPSRDFDFIARQRGMFSYSGLT----------------PEQVDRLREEFGVYA 369 (396)
T ss_pred HHHHHHHHHHHhcCCCCCcccccccceEEEecCCC----------------HHHHHHHHHcCCEEE
Confidence 99999999999862 377889999999999874 257788889999975
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=384.22 Aligned_cols=349 Identities=28% Similarity=0.438 Sum_probs=284.2
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 144 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~ 144 (429)
.++++..+.++.+..+...+++....|+++|+|+.|+| ++++|+.+.+++.+.+.. ...|++..|.++||+++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~ 84 (404)
T PRK09265 6 KSSKLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT-AQGYSDSKGLFSARKAIMQY 84 (404)
T ss_pred hhHHHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc-CCCCCCCCCcHHHHHHHHHH
Confidence 45566667777777777788777777889999999998 566788888888877653 56899999999999999999
Q ss_pred HHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh
Q 014172 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESK 224 (429)
Q Consensus 145 l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 224 (429)
+.+..+..+++++|++|+|+++++..++++++++||+|++++|+|..|...++..|++++.++++.++++.+|++++++.
T Consensus 85 ~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~ 164 (404)
T PRK09265 85 YQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSK 164 (404)
T ss_pred HhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHh
Confidence 98655446889999999999999999999999999999999999999999999999999999887666788999999999
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
+++++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++....++..+.. ..++++++||||.|
T Consensus 165 ~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~ 242 (404)
T PRK09265 165 ITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQH-NLIIFADEIYDKILYDGAVHISIASLAP-DLLCVTFNGLSKAY 242 (404)
T ss_pred ccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEehhhhhccCCCCCcCCHHHcCC-CceEEEEecchhhc
Confidence 988999999999999999999999999999999999 9999999999999987655556666543 34789999999999
Q ss_pred ccccceeeEEEc--CHHH----HHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 014172 305 AMTGWRLGYIAG--PKHF----VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 305 ~~~G~R~G~v~~--~~~~----~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
|++|+|+||+++ ++++ ++.+... .....+++.++|.++..+|..... .+.+....+.++++|+.+.+.|+++
T Consensus 243 ~~pGlRiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~L~~~ 320 (404)
T PRK09265 243 RVAGFRVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQS-INELILPGGRLYEQRDRAWELLNAI 320 (404)
T ss_pred cCcccceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchh-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999995 4443 3333322 234467889999999999964110 1112222356788899999999988
Q ss_pred CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 ~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+++.+|++|||+|++++.... +..++.+++.++++++||.|
T Consensus 321 ~~~~~~~p~~g~~l~~~~~~~~~-------~~~~~~~~~~~~l~~~gv~v 363 (404)
T PRK09265 321 PGVSCVKPKGALYAFPKLDPKVY-------PIHDDEQFVLDLLLQEKVLL 363 (404)
T ss_pred CCCcccCCCcceEEEEEeccccc-------CCCCHHHHHHHHHHhCCEEE
Confidence 88998999999999999975210 01245666667777889986
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=397.51 Aligned_cols=328 Identities=21% Similarity=0.328 Sum_probs=265.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc--C--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE--G--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~--~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
++|+|+.+.+.|+. ++++.+.+.+.+ + ..+|+++.|.++||++||+++.+++|+++++++|++|+|+++++.++
T Consensus 130 ~~i~~~~~~~~fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~ 207 (534)
T PLN02231 130 SLLDKSETHGLFSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMM 207 (534)
T ss_pred ccCCCCCccccCCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHH
Confidence 46666665555543 555555566653 2 46799999999999999999999899999999999999999999999
Q ss_pred HHHhcC-CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCC
Q 014172 172 VLAVCS-PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSV 244 (429)
Q Consensus 172 l~~l~~-~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~ 244 (429)
+++++. +||.|+++.|+|+.|...++..|++++.++++++++|.+|+++|++.+++ ++|+++++|||||||.+
T Consensus 208 ~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v 287 (534)
T PLN02231 208 MQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQV 287 (534)
T ss_pred HHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC
Confidence 999984 89999999999999999999999999999998777899999999998864 68999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC-CCCCccccCCC------CCCceEEEeccChhc-ccccceeeEEEc
Q 014172 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPG------MWERTLTVNGFSKAF-AMTGWRLGYIAG 316 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~-~~~~~~~~~~~------~~~~~i~~~S~SK~~-~~~G~R~G~v~~ 316 (429)
++.+++++|+++|++| |++||+||+|.+++|++ ..+.++..+.. ...++|+++||||.+ |++|+|+||+++
T Consensus 288 ls~e~l~~Iv~~a~~~-~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~ 366 (534)
T PLN02231 288 LAEENQRDIVEFCKQE-GLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEV 366 (534)
T ss_pred CCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEE
Confidence 9999999999999999 99999999999999963 44555554421 123689999999976 899999999986
Q ss_pred ---CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCC----CChH---HHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 317 ---PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGE---VVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 317 ---~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~---~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
++++++.+.+... ...+++.+.|.++..+++.+. ..++ +.+.+++.|+++++.+.+.|++++|+++.+|
T Consensus 367 ~~~~~~l~~~l~k~~~-~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~~~~p 445 (534)
T PLN02231 367 TGFTSDVREQIYKVAS-VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVTCNKA 445 (534)
T ss_pred ecCCHHHHHHHHHHHh-hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 6889999887765 456788899999888886421 0123 3445688999999999999999989999999
Q ss_pred CceEEEEEec--CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDF--STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+||||+|+++ |...-..++.. +..++..++.+|++++||++
T Consensus 446 ~Ggfylw~~l~lp~~~~~~~~~~-~~~~d~~~~~~Ll~~~GV~v 488 (534)
T PLN02231 446 EGAMYLFPRIHLPQKAIKAAEAA-KTAPDAFYCKRLLNATGIVV 488 (534)
T ss_pred CeeeEEeccccCcHHHHHHHhhc-CCCcHHHHHHHHHHhcCEEE
Confidence 9999999665 32100000000 01235567899999999986
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=354.59 Aligned_cols=323 Identities=24% Similarity=0.436 Sum_probs=289.2
Q ss_pred CCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 95 VSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 95 ~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
+++|.|+.|+|. +++.++..+|+.++++.+ .+.|+|+.|....|+++|+|+.+.....+++++|++|+|++++|+
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 489999999974 566789999999999875 578999999999999999999887777789999999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHH
Q 014172 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 170 ~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
.++.++.+||..||+|.|+|+-|...+...|.+++.+++-++.+|++|++.++..++++|.+++++||+||+|.+++.+.
T Consensus 141 ~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~H 220 (447)
T KOG0259|consen 141 LAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDH 220 (447)
T ss_pred HHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH--------HHH
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--------HFV 321 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~--------~~~ 321 (429)
+++|+++|+++ +++||.||+|.+++|++.++.++..+.. ---++.++|+||.|-.||||+||++..+ .++
T Consensus 221 L~kiae~A~kl-gi~vIaDEVY~~~vfg~~pfvpmg~fss-iVPVitlggisKrW~VPGWRlGWi~~hD~~gvf~~~~~~ 298 (447)
T KOG0259|consen 221 LKKIAETAKKL-GIMVIADEVYGHTVFGDKPFVPMGKFSS-IVPVITLGGISKRWIVPGWRLGWIALHDPRGVFRDTKVV 298 (447)
T ss_pred HHHHHHHHHHh-CCeEEehhhcceeecCCCCccchhhccc-cCceEeecccccccccCCceeeeEEEecccccccchHHH
Confidence 99999999999 9999999999999999998888887754 3567999999999999999999998743 345
Q ss_pred HHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEEEecCCcc
Q 014172 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYY 400 (429)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~~~l~~~~ 400 (429)
+.+.+... ...++.++.|.|.-..|... .++++......++.+.++.++.|+++|++. ..+|+|.||+|++++-.
T Consensus 299 q~~~~~~~-~~~~p~TiiQ~AlP~IL~kT--p~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s- 374 (447)
T KOG0259|consen 299 QGIKNFLD-IIPGPATIIQGALPDILEKT--PEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLS- 374 (447)
T ss_pred HHHHHHHh-ccCCccHhHHHHhHHHHHhC--hHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchh-
Confidence 66666654 45679999999999999863 478899999999999999999999999998 56899999999988631
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
-+..+.|+.+||.+|.+|..|.+
T Consensus 375 -----~~~~~~dD~dFc~kL~~Eesv~~ 397 (447)
T KOG0259|consen 375 -----LFPDIEDDVDFCQKLAREESVIC 397 (447)
T ss_pred -----hhccccccHHHHHHHhhhcceEE
Confidence 12345689999999999887653
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=380.15 Aligned_cols=339 Identities=25% Similarity=0.448 Sum_probs=287.1
Q ss_pred hhHHHHHHHHHHHhcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Q 014172 79 KTVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSY 153 (429)
Q Consensus 79 ~~~~~~~~~~~~~~~g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~ 153 (429)
.+.++...+.+...+|.++|+|+.|+|. +++++.+.+++.+.+... ...|++..|..++|+++++++...+|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~ 94 (403)
T TIGR01265 15 PIRAIVDNLKVKPNPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKL 94 (403)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Confidence 4556666666655568899999999984 677899999999888654 35798999999999999999998778888
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEE
Q 014172 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~ 233 (429)
++++|++|+|+++++.+++++++++||+|++++|+|..|...++..|++++.+++++++++.+|++.+++.+.+++++++
T Consensus 95 ~~~~ii~t~G~t~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~ 174 (403)
T TIGR01265 95 TADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIV 174 (403)
T ss_pred CHHHEEEecChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEE
Confidence 89999999999999999999999999999999999999999999999999999987666788999999999988999999
Q ss_pred EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 234 l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
+++||||||.+++.+++++|+++|+++ |++||+||+|.++.|++....++.++.. ..++|+++||||.|+++|+|+||
T Consensus 175 i~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~~pGlRiG~ 252 (403)
T TIGR01265 175 VINPSNPCGSVFSRDHLQKIAEVARKL-GIPIIADEIYGHMVFGDAPFIPMASFAS-IVPVLSLGGISKRWVVPGWRLGW 252 (403)
T ss_pred EecCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEccccccccCCCCccchhhhcc-CCcEEEEeecccccCCCcceEEE
Confidence 999999999999999999999999999 9999999999999987655556666654 35799999999999999999999
Q ss_pred EEcC--HH-----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 314 IAGP--KH-----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 314 v~~~--~~-----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
++++ ++ +++.+..... ...+++.+.|.++..+|... .+.++++.+++++++|+.+.+.|+.++|+.+..|
T Consensus 253 ~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p 329 (403)
T TIGR01265 253 IIIHDPHGIFRDTVLQGLKNLLQ-RILGPATIVQGALPDILENT--PQEFFDGKISVLKSNAELCYEELKDIPGLVCPKP 329 (403)
T ss_pred EEEeCchhhhHHHHHHHHHHHhh-hhcCCChHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC
Confidence 9983 23 3344444332 24568999999999999752 3678999999999999999999998878888889
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|++++... .....++.+++++|++++||.|
T Consensus 330 ~~g~f~~~~~~~~~------~~~~~~~~~~~~~l~~~~gv~v 365 (403)
T TIGR01265 330 EGAMYLMVKLELEL------FPEIKDDVDFCEKLVREESVIC 365 (403)
T ss_pred CceeEEEEeccccc------cCCCCCHHHHHHHHHHhCCEEE
Confidence 99999999997420 0011267899999888889976
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=391.97 Aligned_cols=323 Identities=19% Similarity=0.342 Sum_probs=266.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHhhcCCC--CCCCcEEEe
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENGLS--YTPDQILVS 161 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~~i~~t 161 (429)
.+|+|+.++|.+.. +.+.+.+..... .....|++..|.++||++||+++.+.+|.. +++++|++|
T Consensus 39 g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit 117 (468)
T PLN02450 39 GIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLT 117 (468)
T ss_pred eeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEc
Confidence 58999999998765 555555544311 123458888899999999999999887744 689999999
Q ss_pred cChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEE
Q 014172 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 234 (429)
Q Consensus 162 ~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l 234 (429)
+|+++++..++.++++|||.|++++|+|+.|...+. ..|++++.++++.+++|.+|++.+++++.+ ++|+|++
T Consensus 118 ~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l 197 (468)
T PLN02450 118 AGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLI 197 (468)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEE
Confidence 999999999999999999999999999999988888 589999999987677888999999988753 7899999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC--------CCCCceEEEeccChhccc
Q 014172 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP--------GMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~--------~~~~~~i~~~S~SK~~~~ 306 (429)
++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++.++. ...+++++++||||.|++
T Consensus 198 ~nP~NPTG~~~s~e~l~~ll~~a~~~-~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l 276 (468)
T PLN02450 198 TNPSNPLGTTTTRTELNLLVDFITAK-NIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGL 276 (468)
T ss_pred ecCCCCCCcccCHHHHHHHHHHHHHC-CcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCC
Confidence 99999999999999999999999999 999999999999988764444443321 125799999999999999
Q ss_pred ccceeeEEEcCHH-HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 307 TGWRLGYIAGPKH-FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 307 ~G~R~G~v~~~~~-~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
+|+|+||++++++ +++.+.+... + .+++.++|.++..+|+++.....++++.+++|+++|+.+.+.|+++ |+.+.+
T Consensus 277 ~GlRiG~li~~~~~l~~~~~~~~~-~-~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~ 353 (468)
T PLN02450 277 PGFRVGAIYSNDEMVVSAATKMSS-F-GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLK 353 (468)
T ss_pred CCccEEEEEECCHHHHHHHHHHhh-c-CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccC
Confidence 9999999999854 5666665532 2 3478999999999998743323578889999999999999999998 898889
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|++|||+|++++..... . ...+..+++++|++++||.|
T Consensus 354 ~~~g~flwi~l~~~~~~--~---~~~~~~~l~~~ll~~~gV~v 391 (468)
T PLN02450 354 SNAGLFCWVDMRHLLKS--N---TFEAEMELWKKIVYEVKLNI 391 (468)
T ss_pred CCceEEEEEEchHhcCc--C---CchHHHHHHHHHHHhCCEEE
Confidence 99999999999753210 0 11234678999999889986
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-47 Score=376.77 Aligned_cols=336 Identities=27% Similarity=0.383 Sum_probs=273.6
Q ss_pred cccccccCCc-hhHHHHHHHHHHHh--cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-----CCCCCCCCCCHHHHHH
Q 014172 69 SPRVNAVKPS-KTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-----FTRYTPNAGTLELRSA 140 (429)
Q Consensus 69 s~~~~~~~~~-~~~~~~~~~~~~~~--~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-----~~~Y~~~~G~~~lr~~ 140 (429)
++.+.+++++ .+.++..++.+.+. .+.++|+|+.|+|++++|+.+.+++.+.+.+. ...|+|..|.++||++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~a 83 (402)
T TIGR03542 4 NPHFLKLKSSYLFSEINRRVNEFRKKHPSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREA 83 (402)
T ss_pred CCCccccCcchHHHHHHHHHHHHHhccCCCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHH
Confidence 4555666665 45566666666654 35689999999999999999999999887642 3569899999999999
Q ss_pred HHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCC-----------EEEEecCC
Q 014172 141 ICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA-----------TPVILPTR 209 (429)
Q Consensus 141 ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~-----------~~~~v~~~ 209 (429)
+|+++.+. + +++++|++|+|+++++..+ ..++.+||+|++++|+|..|...++..|+ +++.++++
T Consensus 84 ia~~~~~~-~--~~~d~I~it~Ga~~al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~ 159 (402)
T TIGR03542 84 IAENDYRG-R--IDPEEIFISDGAKCDVFRL-QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCT 159 (402)
T ss_pred HHHHHHhc-C--CCHHHEEECCCcHHHHHHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecc
Confidence 99986422 2 7889999999999999975 56678999999999999999999999999 99999987
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
.++++.+|++. .+++++|++++||||||.+++.+++++|+++|++| +++||+||+|.+|.+++..+.++..++.
T Consensus 160 ~~~~~~~~~~~-----~~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~ 233 (402)
T TIGR03542 160 KENNFIPDLPE-----EPKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEH-GSLILFDAAYSAFISDPSLPHSIFEIPG 233 (402)
T ss_pred hhhCCCCCccc-----cCCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CeEEEEEchhhhhccCCCCCcchhhCCC
Confidence 66666666432 14789999999999999999999999999999999 9999999999999886644445555555
Q ss_pred CCCceEEEeccChhcccccceeeEEEcCHHHH--------HHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--------AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~--------~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~ 361 (429)
..+++|+++||||.||++|+|+||++++++++ ..+.........+++.+.|.++..++..+. .+++.+.+
T Consensus 234 ~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~--~~~~~~~~ 311 (402)
T TIGR03542 234 AKECAIEFRSFSKTAGFTGVRLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEG--LQPILEAI 311 (402)
T ss_pred CcccEEEEecCccccCCCCcceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcc--hhHHHHHH
Confidence 45789999999999999999999999999876 222222222333578899999888887532 35677788
Q ss_pred HHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.|+++|+.+.+.|++. |+++..|.+++|+|++++.. .++.+++++|++++||.|
T Consensus 312 ~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~~-----------~~~~~l~~~l~~~~gv~v 366 (402)
T TIGR03542 312 SYYMENARILRKALEAA-GFKVYGGEHAPYLWVKTPEG-----------ISSWDFFDFLLYQYHVVG 366 (402)
T ss_pred HHHHHHHHHHHHHHHhc-CceecCCCceeEEEEECCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 99999999999999987 78888888999999999853 367899999998889976
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-48 Score=385.41 Aligned_cols=338 Identities=16% Similarity=0.182 Sum_probs=255.6
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCC-CCCCChHHHHHHHHHH----HHcC-CCCCCCCCCCHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE-PDFDTPVLIAEAGINA----IREG-FTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~-~~~~~p~~v~~a~~~~----~~~~-~~~Y~~~~G~~~lr~~ia~ 143 (429)
.++...+...+..+.+.++. ..+...|+|+.|. |+...++.+.+++.++ +..+ ..+|++..|.++||+++++
T Consensus 25 ~~~~~~~~~~i~~~~~~~~~--~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~ 102 (423)
T PLN02397 25 EHVEPAPPDPILGVTEAFLA--DPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAK 102 (423)
T ss_pred HcCCcCCCChHHHHHHHHhh--CCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHH
Confidence 44555566666565554433 2345689999996 6665555444444443 3333 3479999999999999999
Q ss_pred HHHhhcCCCCCCCcE-----EEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 144 KLKEENGLSYTPDQI-----LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i-----~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
|+.+.++...++++| +.++|+. .+...+..++.|||+|++++|+|+.|...++..|++++.+++..++++.+|+
T Consensus 103 ~~~~~~~~~~~~~~i~~~~i~~g~Ga~-~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~ 181 (423)
T PLN02397 103 LAYGADSPAIKENRVATVQCLSGTGSL-RLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF 181 (423)
T ss_pred HHcCCCCchhhcCeeEeeecccchHHH-HHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCH
Confidence 997654433333444 3333333 3444555666799999999999999999999999999999985444588999
Q ss_pred HHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC--CCCccccCCCCCCc
Q 014172 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~--~~~~~~~~~~~~~~ 293 (429)
+.+++.+. ++++++++++||||||.+++.+++++|+++|++| |++||+||+|.+|.|++. .+.++..+....++
T Consensus 182 ~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~-~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 260 (423)
T PLN02397 182 DGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSK-NHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHE 260 (423)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEecccCCccCCchhhhhHHHHHHHhcCCc
Confidence 98887764 5678888999999999999999999999999999 999999999999998641 23344344333467
Q ss_pred eEEEeccChhcccccceeeEEE--c-CHHHHH----HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHH---HHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIA--G-PKHFVA----ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKA 363 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~--~-~~~~~~----~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~---~~~~~~~ 363 (429)
+|+++||||.|+|+|||+||++ + ++++++ .+.+.......+++.+.|.++..+|+.+...++| ++++++.
T Consensus 261 vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~ 340 (423)
T PLN02397 261 ILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADR 340 (423)
T ss_pred EEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999984 3 565544 4444444556678889999999889762111233 6788999
Q ss_pred HHHHHHHHHHHhccCCC----ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGELEG----VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g----~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++|+.+.+.|+++ | +++..|+||||+|++++ .+|+++|++++||+|
T Consensus 341 ~~~rr~~l~~~L~~~-~~~~~~~~~~p~gg~fl~~~l~----------------~~~~~~Ll~~~~V~v 392 (423)
T PLN02397 341 IISMRQKLYDALEAR-GSPGDWSHITKQIGMFSFTGLN----------------KEQVDRMTKEYHIYM 392 (423)
T ss_pred HHHHHHHHHHHHHhc-CCCCCCCcccCCceEEEecCCC----------------HHHHHHHHHhCCEEE
Confidence 999999999999998 5 77788999999999873 359999999999986
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=381.51 Aligned_cols=315 Identities=26% Similarity=0.434 Sum_probs=282.4
Q ss_pred CCeEEcCCCCCCCCC-h-HHHHHHHHHHHHc---C-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 95 VSVIRLAAGEPDFDT-P-VLIAEAGINAIRE---G-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~-p-~~v~~a~~~~~~~---~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
...|+|+.|.|+... | ..+.+++.+.++. . ...|++..|.++||++|++++....|+.+++++|++|+|+++++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence 578999999977654 3 4566666666542 2 46788889999999999999998899999999999999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEE-cCCCCCccCCCC
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLIL-CSPSNPTGSVYP 246 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l-~~p~NPtG~~~~ 246 (429)
+++++.+++|||+|++++|+|.....+++..|++++.||++.++ +|+|.+++.+.. ++|++|+ ++-|||||.+|+
T Consensus 169 ~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G---~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms 245 (459)
T COG1167 169 DLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDG---IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMS 245 (459)
T ss_pred HHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCCCC---CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccC
Confidence 99999999999999999999999999999999999999997433 899999999875 7899885 777999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~ 326 (429)
.++.++|+++|++| |++||+||.|++|.|++...+++..++. .++||+++||||+++ ||+|+||+++++++++.+..
T Consensus 246 ~~rR~~Ll~lA~~~-~~~IIEDD~y~el~~~~~p~~~l~~ld~-~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~~~~~ 322 (459)
T COG1167 246 LERRKALLALAEKY-DVLIIEDDYYGELRYDGPPPPPLKALDA-PGRVIYLGSFSKTLA-PGLRLGYVVAPPELIEKLLR 322 (459)
T ss_pred HHHHHHHHHHHHHc-CCeEEeeCcchhhhcCCCCCCChHhhCC-CCCEEEEeeehhhcc-cccceeeeeCCHHHHHHHHH
Confidence 99999999999999 9999999999999999877777777765 699999999999997 99999999999999999999
Q ss_pred HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-C-CceeecCCceEEEEEecCCccCCcc
Q 014172 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-E-GVKMSEPQGAFYLFIDFSTYYGSEA 404 (429)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l-~-g~~~~~p~~~~~~~~~l~~~~~~~~ 404 (429)
.+.....+++.+.|.++...+..+.+ ++|++++++.|++||+.+.++|++. + +++|..|.||||+|+++|..
T Consensus 323 ~k~~~~~~~s~~~Q~~la~~l~~G~~-~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~----- 396 (459)
T COG1167 323 LKQAADLGPSSLSQAALAAFLLSGHY-DRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEG----- 396 (459)
T ss_pred HHHHhcCCCChHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCC-----
Confidence 99999999999999999999997554 8999999999999999999999995 4 58899999999999999975
Q ss_pred cCCCCCCChHHHHHHHHHhCCeec
Q 014172 405 EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.++..+++++ ||.+
T Consensus 397 ------~~~~~l~~~a~~~-gv~i 413 (459)
T COG1167 397 ------IDARELLAAALEK-GVVV 413 (459)
T ss_pred ------CCHHHHHHHHHHC-CCEE
Confidence 3788999999887 6654
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=387.00 Aligned_cols=320 Identities=22% Similarity=0.322 Sum_probs=253.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh-hcCCCC-C--CCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE-ENGLSY-T--PDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~-~~g~~~-~--~~~i~~t~G~~~al~~~ 171 (429)
++|+|+.|+|++++|+.+.++. +++.. .+|+++.|.++||++|++++.+ .++... . .++|++|+|+++++..+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~-~~~~~--~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~ 177 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELV-DGIIG--DNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYI 177 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHH-HHHhc--CCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 4799999999999998888844 44433 3599999999999999985544 333222 2 34999999999999999
Q ss_pred HHH-----hcCCCCEEEEcCCCCCChHHHHHHcC--CEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCC
Q 014172 172 VLA-----VCSPGDEVIIPAPFWVSYPEMARIAD--ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (429)
Q Consensus 172 l~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g--~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~ 244 (429)
+.+ +++|||+|++++|+|+.|...+++.| ++++.++.+++++|.+|++++++++++++|+|++++||||||.+
T Consensus 178 ~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v 257 (527)
T PRK09275 178 FDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVA 257 (527)
T ss_pred HHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCC
Confidence 886 68999999999999999999998885 55566666566789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhC-CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH----
Q 014172 245 YPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---- 319 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~~-~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~---- 319 (429)
++.+++++|+++|+++ ++++||+||+|.++.+ .+.++... ..+++|+++||||.|||+|||+||++++++
T Consensus 258 ~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~--~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~ 332 (527)
T PRK09275 258 MSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAV--LPYNTILVYSFSKYFGATGWRLGVIALHEDNVFD 332 (527)
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHh--CCCCEEEEeehhhhccCcHhHHhhhhcCchhHHH
Confidence 9999999999999542 2899999999999764 23344333 247999999999999999999999999876
Q ss_pred -HHHHH--------------------------------HHHhhcccCCCchHHHHHH-----HHHHhcCCCChHHHHHHH
Q 014172 320 -FVAAC--------------------------------NKIQSQFTSGASSISQKAG-----VAALGLGYAGGEVVSKMV 361 (429)
Q Consensus 320 -~~~~l--------------------------------~~~~~~~~~~~~~~~q~aa-----~~~l~~~~~~~~~~~~~~ 361 (429)
+++.+ +++....+.|++.+.|.++ .++|+. .+++++.++
T Consensus 333 ~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~---~~~~~~~~~ 409 (527)
T PRK09275 333 KLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE---EDAYKKAMK 409 (527)
T ss_pred HHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---chHHHHHHH
Confidence 33333 4666777889999999872 344554 467899999
Q ss_pred HHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc----CC-cccCCCCCCChHHHHHHHHHhCCeec
Q 014172 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY----GS-EAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~----~~-~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.|++||+.+.+.|. + ++...+|+|+||+|++++... +. .+.-.....++.+|+.+|++++||++
T Consensus 410 ~~~~~Rr~~l~~~Lg-~-~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v 479 (527)
T PRK09275 410 DIIRRRYKALYEGLG-L-PEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVL 479 (527)
T ss_pred HHHHHHHHHHHHHcC-C-CCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEE
Confidence 999999999999983 2 344457999999999997531 10 00000011268899999999999986
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=368.73 Aligned_cols=325 Identities=26% Similarity=0.352 Sum_probs=269.9
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l 145 (429)
|.+|.+++...... +...+......+.++|+|+.|+|..+.++.+.+++.+... ..+|++..|.++||+++++++
T Consensus 1 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l 75 (364)
T PRK07865 1 MPVSARLPDFPWDT---LAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAAD--APGYPTTAGTPELREAIVGWL 75 (364)
T ss_pred CCccccCCCccHHH---HHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHh--hCCCCCccCCHHHHHHHHHHH
Confidence 45667776665543 3333333445566799999999987778888888876643 358988899999999999999
Q ss_pred HhhcCCC-CCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh
Q 014172 146 KEENGLS-YTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 146 ~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
.+.+|++ +++++|++|+|+++++..++..+ +++||.|++++|+|+.|...++..|++++.++. ++++..
T Consensus 76 ~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~l~~ 146 (364)
T PRK07865 76 ARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------LTELGP 146 (364)
T ss_pred HHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------hhhCCc
Confidence 9998986 88999999999999999888888 799999999999999999999999999988752 233322
Q ss_pred hcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC---CCCCCceEEEecc
Q 014172 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL---PGMWERTLTVNGF 300 (429)
Q Consensus 224 ~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~---~~~~~~~i~~~S~ 300 (429)
+++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++.. .+.... ....+++|+++||
T Consensus 147 ---~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~ 221 (364)
T PRK07865 147 ---QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARER-GAVVASDECYLELGWDAEP-VSILDPRVCGGDHTGLLAVHSL 221 (364)
T ss_pred ---ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhhhccCCCC-CccccccccCCccceEEEEeec
Confidence 5789999999999999999999999999999999 9999999999998886532 222111 1234789999999
Q ss_pred ChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 301 SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
||.|+++|+|+||+++++++++.+.........+++.+.|.++..+|.. .+++++.++.|+++++.+.+.|++. |
T Consensus 222 SK~~~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g 296 (364)
T PRK07865 222 SKQSNLAGYRAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGD----DAHVREQRERYARRRAVLRPALEAA-G 296 (364)
T ss_pred hhccCCCceeeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 9999999999999999999999998877666677899999999998875 6788899999999999999999987 8
Q ss_pred ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 ~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+..|++|||+|++++. +..++++.|.+ .||.|
T Consensus 297 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~-~gv~v 330 (364)
T PRK07865 297 FRVDHSEAGLYLWATRGE-------------DCWDTVAWLAE-RGILV 330 (364)
T ss_pred CcccCCCccEEEEEeCCC-------------CHHHHHHHHHH-CCEEE
Confidence 888889999999998842 46678877655 59976
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=381.41 Aligned_cols=306 Identities=21% Similarity=0.258 Sum_probs=264.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
...++|+.|.|+.++++.+.+++.+.... ...|++..|..+||+++++++.+..+ .+++|++|+|++++|.+++++
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~~Iiit~G~~~al~~~~~~ 160 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYFARLSRT-PRLYGDAPVSPELHAWAARWLRDDCP---VAFEIDLTSGAIDAIERLLCA 160 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHHHHhhhh-hhhcCCcCCCHHHHHHHHHHHhhccC---CcCeEEEecCcHHHHHHHHHH
Confidence 45799999999988877788887775543 45799999999999999999875432 356999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEc-CCCCCccCCCCHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~-~p~NPtG~~~~~~~l~~I 253 (429)
+++|||+|++++|+|..|...++..|++++.+|++.+ .+|++.+++++++++|+++++ +||||||.+++.+++++|
T Consensus 161 l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~---g~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l 237 (431)
T PRK15481 161 HLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAE---GMQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAAL 237 (431)
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCCC---CCCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHH
Confidence 9999999999999999999999999999999998643 389999999998889999886 999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~ 333 (429)
+++|++|++++||+||+|.++.+.+. .+.... ..+++|+++||||.|+ +|+|+||+++++++++.+.........
T Consensus 238 ~~la~~~~~~~ii~De~Y~~~~~~~~--~~~~~~--~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~~~ 312 (431)
T PRK15481 238 RNLLARYPQVLVIIDDHFALLSSSPY--HSVIPQ--TTQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSGTQ 312 (431)
T ss_pred HHHHHhcCCceEEecCchhhhccCCC--CCCCcC--CCCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhcccc
Confidence 99999986899999999999876542 222222 3479999999999999 999999999999999999876666556
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
+++.+.|.++..+|+++.. .+|++++++.|+++|+.+.+.|++. |+++..|++|||+|++++. ++
T Consensus 313 ~~s~~~q~a~~~~l~~~~~-~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~-------------~~ 377 (431)
T PRK15481 313 WVSHLLQDLVYACLTDPEY-QARLAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDT-------------DS 377 (431)
T ss_pred CCCHHHHHHHHHHHhCccH-HHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCC-------------CH
Confidence 7899999999999987432 5678999999999999999999998 8888789999999999973 46
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
.+++++|.+ +||.|
T Consensus 378 ~~~~~~l~~-~gV~v 391 (431)
T PRK15481 378 QATALTLAK-SGWLV 391 (431)
T ss_pred HHHHHHHHH-CCcEE
Confidence 789998875 59876
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=366.37 Aligned_cols=319 Identities=26% Similarity=0.332 Sum_probs=271.9
Q ss_pred CCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC-CC
Q 014172 76 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS-YT 154 (429)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~-~~ 154 (429)
++.+++.+...+++.++.+.++|+|+.|+|+.++++.+.+++.+... ...|++..|.++||+++++++++.+|++ ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~ 79 (357)
T TIGR03539 2 PDFPWDSLAPYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAAD--APGYPQTWGTPELREAIVDWLERRRGVPGLD 79 (357)
T ss_pred CcchHHHHHHHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHHh--hCCCCcccCCHHHHHHHHHHHHHhcCCCCCC
Confidence 45667788888888888888899999999988888888888877653 4679888999999999999999988987 99
Q ss_pred CCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEE
Q 014172 155 PDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~ 233 (429)
+++|++|+|+++++..++..+ +++||.|++++|+|+.|...++..|++++.++ +++.+. .+++++|+
T Consensus 80 ~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~---------~~~~l~---~~~~~~v~ 147 (357)
T TIGR03539 80 PTAVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAAD---------DPTELD---PVGPDLIW 147 (357)
T ss_pred cCeEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccC---------ChhhcC---ccCccEEE
Confidence 999999999999999988888 79999999999999999999999999988874 223332 24789999
Q ss_pred EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc--CCCCCCceEEEeccChhccccccee
Q 014172 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS--LPGMWERTLTVNGFSKAFAMTGWRL 311 (429)
Q Consensus 234 l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~--~~~~~~~~i~~~S~SK~~~~~G~R~ 311 (429)
+++|+||||.+++.+++++|+++|++| |++||+||+|.++.|++.....+.. .+...+++|+++||||.|+++|+|+
T Consensus 148 ~~~p~NPtG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~ 226 (357)
T TIGR03539 148 LNSPGNPTGRVLSVDELRAIVAWARER-GAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRA 226 (357)
T ss_pred EeCCCCCcCccCCHHHHHHHHHHHHHc-CeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeE
Confidence 999999999999999999999999999 9999999999998886532111111 1223468999999999999999999
Q ss_pred eEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEE
Q 014172 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY 391 (429)
Q Consensus 312 G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~ 391 (429)
||+++++++++.+.+.......+++.+.|.++..+|.. ..++++.++.|+++++.+.+.|++. |+.+.+|++|+|
T Consensus 227 G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~p~~~~~ 301 (357)
T TIGR03539 227 GFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD----DGHVAEQKARYAARRAQLKPALEKA-GFRIDHSEAGLY 301 (357)
T ss_pred EEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHHHHHHHc-CCCCcCCCccEE
Confidence 99999999999998877666678899999999999874 6778889999999999999999987 888889999999
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|++++. +..+++++|. ++||.|
T Consensus 302 ~~~~~~~-------------~~~~~~~~l~-~~gV~v 324 (357)
T TIGR03539 302 LWATRGE-------------DAWDTVDRLA-ELGILV 324 (357)
T ss_pred EEEECCC-------------CHHHHHHHHH-hCCEEE
Confidence 9999852 5667887775 559976
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=384.79 Aligned_cols=326 Identities=20% Similarity=0.360 Sum_probs=265.1
Q ss_pred CeEEcCCCCCCC--CC-hHHHHHHHHHHHHc--------CCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCCCcEEEec
Q 014172 96 SVIRLAAGEPDF--DT-PVLIAEAGINAIRE--------GFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSN 162 (429)
Q Consensus 96 ~~i~L~~g~~~~--~~-p~~v~~a~~~~~~~--------~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~~t~ 162 (429)
.+|+|+.+++.+ +. ++.+.+.....+.. ....|++..|.++||++||+++++.+| +++++++|++|+
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~ 126 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG 126 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence 589999999987 44 45555544432111 134688889999999999999999888 668999999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCCCCHHHHHhhc------ccCCcEEEEc
Q 014172 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILC 235 (429)
Q Consensus 163 G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~l------~~~~~~i~l~ 235 (429)
|+++++..+++++++|||.|++++|+|+.|...++ ..|++++.++++.+++|.+|++.+++++ ..++|+|+++
T Consensus 127 Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~ 206 (496)
T PLN02376 127 GATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILT 206 (496)
T ss_pred chHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEc
Confidence 99999999999999999999999999999998887 5899999999976677889999997653 2478999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-------CCceEEEeccChhccccc
Q 014172 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 236 ~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-------~~~~i~~~S~SK~~~~~G 308 (429)
+||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++.++... .+++++++||||.||++|
T Consensus 207 nP~NPTG~~~s~e~l~~L~~~a~~~-~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpG 285 (496)
T PLN02376 207 NPSNPLGTMLDKDTLTNLVRFVTRK-NIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPG 285 (496)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCc
Confidence 9999999999999999999999999 99999999999999887656666555221 246778999999999999
Q ss_pred ceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 309 WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 309 ~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
+|+||++++ +.+++.+...... ..++.+.|.++..+|.++...++++.+.++.|+++++.+.+.|++. |+++.+|+
T Consensus 286 lRvG~li~~~~~l~~~~~~~~~~--~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~~ 362 (496)
T PLN02376 286 FRVGIVYSFNDSVVSCARKMSSF--GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTSN 362 (496)
T ss_pred ceEEEEEECCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCC
Confidence 999999985 5566655544332 2478999999999998633224567778999999999999999987 88888999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
||+|+|++++..... . ....++.+++++|+++.||.|+
T Consensus 363 aG~flwi~l~~~~~~-~---~~~~~e~~l~~~ll~~~gV~v~ 400 (496)
T PLN02376 363 AGLFAWMDLRHLLRD-R---NSFESEIELWHIIIDKVKLNVS 400 (496)
T ss_pred ceEEEEEEchhhhcc-C---CchhHHHHHHHHHHHcCCEEEe
Confidence 999999999753210 0 0112357899999998899874
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=346.00 Aligned_cols=319 Identities=28% Similarity=0.483 Sum_probs=291.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.+++.|++.+.||++||++++++.+.+..+..+|+ .+..++.++|++|.+++++..+.++.|++++|.-.++..++++
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~ 102 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRA 102 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHH
Confidence 57999999999999999999999999999888885 6788999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC-CCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
+.++||.|++..|.|+++....+..|.+++..|+.. ++.|.+|.++|++++.+ ++|++++||||||||.+.++|++.+
T Consensus 103 ~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~ 182 (388)
T COG1168 103 LTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRK 182 (388)
T ss_pred hCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHH
Confidence 999999999999999999999999999999999874 45588899999998865 5699999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccChhcccccceeeEEEcC-HHHHHH-HHHHhh
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAA-CNKIQS 329 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~-l~~~~~ 329 (429)
|.++|.+| |+.||+||+|+++++.|+.+.++.++... .++.|++.|-||+|+++|+++++++.+ +++..+ ++++..
T Consensus 183 i~elc~kh-~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~ 261 (388)
T COG1168 183 IAELCLRH-GVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR 261 (388)
T ss_pred HHHHHHHc-CCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH
Confidence 99999999 99999999999999999888888876543 588999999999999999999998864 555444 445566
Q ss_pred cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCCC
Q 014172 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 330 ~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
....++|.++..|..++++. ++.|++++.+.++.+++++.+.+.+ +|++++..|+|.|.+|+++.++ +
T Consensus 262 ~~~~~~n~lg~~A~~aAY~~---G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l-~------- 330 (388)
T COG1168 262 NGLHGPSALGIIATEAAYNQ---GEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCREL-G------- 330 (388)
T ss_pred hcCCCCchHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeecccc-C-------
Confidence 67778999999999999998 7999999999999999999999998 6999999999999999999876 2
Q ss_pred CCCChHHHHHHHHHhCCeecC
Q 014172 409 KIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.+..++.+.|+++.+|+++
T Consensus 331 --l~d~~l~~~ll~~akVal~ 349 (388)
T COG1168 331 --LDDSELAEFLLEEAKVALS 349 (388)
T ss_pred --CChHHHHHHHHHhhcEecc
Confidence 3668999999999999875
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=370.81 Aligned_cols=299 Identities=21% Similarity=0.346 Sum_probs=257.0
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.+.++|+|+.|+|++++|+.+++++.+.+.. ...| |..|..+||++|++++. +++++|++|+|+++++.+++
T Consensus 27 ~~~~~i~l~~nen~~~~~~~v~~a~~~~~~~-~~~Y-p~~g~~~Lr~aia~~~~------~~~~~I~vt~Gs~e~i~~~~ 98 (366)
T PRK01533 27 GDHSFVKLASNENPFGCSPRVLDELQKSWLD-HALY-PDGGATTLRQTIANKLH------VKMEQVLCGSGLDEVIQIIS 98 (366)
T ss_pred CCCceEEeCCCCCCCCCCHHHHHHHHHHHHh-cCcC-CCCCHHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHH
Confidence 3457999999999999999999999887654 3346 77899999999999973 68899999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
++++++||+|++++|+|+.|...++..|++++.++++ ++.+|++.++++++++++++++|+||||||.+++.+++++
T Consensus 99 ~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~~~~l~~ 175 (366)
T PRK01533 99 RAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVNDRKLTQ 175 (366)
T ss_pred HHhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999984 3458999999999889999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhccc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~ 332 (429)
|+++|+++ ++ +|+||+|.++.+.+... +........+++|+++||||.||++|+|+||+++++++++.+.+... .
T Consensus 176 l~~~~~~~-~~-~iiDe~y~~~~~~~~~~-~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~~--~ 250 (366)
T PRK01533 176 FIEGISEN-TL-IVIDEAYYEYVTAKDFP-ETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVRL--P 250 (366)
T ss_pred HHHhCCCC-CE-EEEEccHHHhhccccCc-chhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhcC--C
Confidence 99999887 65 56699999887654222 22222223579999999999999999999999999999999988754 3
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCC
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 412 (429)
.+++.++|.++.++|++ .+|+++.++.++++|+.+.+.++.+ |+++.+|+++ |+|++++ +
T Consensus 251 ~~~~~~~q~aa~~~l~~----~~~~~~~~~~~~~~r~~~~~~l~~~-g~~~~~~~~n-f~~~~~~--------------~ 310 (366)
T PRK01533 251 FNVSSLAQKAATIAFGD----DEFIEEIVRVNTEGLRQYESFCKEN-EIPFYQSQTN-FIFLPVE--------------N 310 (366)
T ss_pred CCcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCccCCCcCc-EEEEeCC--------------C
Confidence 57899999999999974 7888889999999999999999888 8888777655 6999885 3
Q ss_pred hHHHHHHHHHhCCeec
Q 014172 413 SESLCRYLLDKAQVLL 428 (429)
Q Consensus 413 ~~~~~~~Ll~~~gV~v 428 (429)
+.++.+.|+++ ||.|
T Consensus 311 ~~~~~~~l~~~-GI~V 325 (366)
T PRK01533 311 GGEIYEACAHA-GFII 325 (366)
T ss_pred HHHHHHHHHHC-CcEE
Confidence 56888888764 9876
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=366.93 Aligned_cols=304 Identities=24% Similarity=0.374 Sum_probs=255.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHhhc--CCCCCCCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEEN--GLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~--g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.+++|+.|+|++++|+.+.+++.+++..+ ...| |..|..+||++||+++++.+ |+.+++++|++|+|+++++..+
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~ 107 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSL 107 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHH
Confidence 48999999999999999999999887654 3568 56799999999999998776 5668899999999999999988
Q ss_pred HHHhcCCCC-EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc----cCCcEEEEcCCCCCccCCCC
Q 014172 172 VLAVCSPGD-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 172 l~~l~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~----~~~~~i~l~~p~NPtG~~~~ 246 (429)
+.+++.+|| .|++++|+|..|...++..|++++.++++. +++++|+++++++++ .++|+|++++||||||.+++
T Consensus 108 ~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~s 186 (374)
T PRK02610 108 LIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPLT 186 (374)
T ss_pred HHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCCC
Confidence 888888886 899999999999999999999999999853 458899999999886 48999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~ 326 (429)
.+++++|.++| + +++||+||+|.+|.+.. .+..+.. .+++|+++||||.||++|+|+||+++++++++.+.+
T Consensus 187 ~~~l~~l~~~~--~-~~~iI~De~Y~~~~~~~----~~~~~~~-~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~ 258 (374)
T PRK02610 187 AAELEWLRSLP--E-DILVVIDEAYFEFSQTT----LVGELAQ-HPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEK 258 (374)
T ss_pred HHHHHHHHhcc--C-CcEEEEeccccccCccc----hHHHHhc-CCCEEEEEecchhccCcccceeeeecCHHHHHHHHH
Confidence 99999999886 5 89999999999875421 1222222 467899999999999999999999999999999988
Q ss_pred HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccC
Q 014172 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (429)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~ 406 (429)
.... .+.+.+.|.++..++.. .+.+.+.+++.++ +|+.+.+.|++++++.+ .|++|+|+|++++..
T Consensus 259 ~~~~--~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~-~r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~------- 324 (374)
T PRK02610 259 VRLP--YNLPSFSQLAAQLALEH---RQELLAAIPEILQ-ERDRLYQALQELPQLRV-WPSAANFLYLRLSQD------- 324 (374)
T ss_pred hcCC--CCCCHHHHHHHHHHhcC---HHHHHHHHHHHHH-HHHHHHHHHHhCCCcEe-CCCcceEEEEeCCCC-------
Confidence 7643 45789999999999875 3566666666655 47778899988878875 488899999999753
Q ss_pred CCCCCChHHHHHHHHHhCCeec
Q 014172 407 FGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 407 ~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.++++.|. ++||.|
T Consensus 325 ----~~~~~~~~~l~-~~gi~v 341 (374)
T PRK02610 325 ----AALAALHQALK-AQGTLV 341 (374)
T ss_pred ----CCHHHHHHHHH-HCCEEE
Confidence 26788988875 458876
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=373.43 Aligned_cols=324 Identities=21% Similarity=0.370 Sum_probs=268.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHhhcCC--CCCCCcEEEe
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVS 161 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~i~~t 161 (429)
.+|+|+..++.+. .+++.+.+.+... +....|.+..|.++||+++|+++++.+|. ++++++|++|
T Consensus 48 g~i~l~~aeN~l~-~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit 126 (447)
T PLN02607 48 GVIQMGLAENQVS-FDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLT 126 (447)
T ss_pred ceEEEechhhhhh-HHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEc
Confidence 4899999998763 4556665555322 11245878889999999999999988773 5889999999
Q ss_pred cChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEE
Q 014172 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 234 (429)
Q Consensus 162 ~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l 234 (429)
+|+++++.+++.++++|||.|+++.|+|+.+...+. ..|++++.|+++.+++|.+|++.++++++. ++|+|++
T Consensus 127 ~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll 206 (447)
T PLN02607 127 AGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLI 206 (447)
T ss_pred CChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEE
Confidence 999999999999999999999999999999998777 579999999988777788999999998863 7899999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC------CCCCceEEEeccChhccccc
Q 014172 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP------GMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~------~~~~~~i~~~S~SK~~~~~G 308 (429)
+|||||||.+++++++++|+++|++| +++||+||+|..+.|++....++.++. ...+++++++||||.||++|
T Consensus 207 ~nP~NPtG~~~s~e~l~~l~~~~~~~-~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~G 285 (447)
T PLN02607 207 TNPSNPLGATVQRSVLEDILDFVVRK-NIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPG 285 (447)
T ss_pred eCCCCCcCcccCHHHHHHHHHHHHHC-CCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCc
Confidence 99999999999999999999999999 999999999999988765555665431 12578999999999999999
Q ss_pred ceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 309 WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 309 ~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
+|+||+++ ++++++.+...... .+++.+.|.++..+|.+....+.++...+++++++++.+.+.|++. |+.+.+++
T Consensus 286 lRvG~ivs~n~~l~~~~~~~~~~--~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~~ 362 (447)
T PLN02607 286 FRVGTIYSYNDKVVTTARRMSSF--TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKGN 362 (447)
T ss_pred ceEEEEEEcCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccCC
Confidence 99999998 67777777655322 2468889999999998744334678889999999999999999997 88888999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+|+|+|++++...... ....+.+++++|++++||.|.
T Consensus 363 ag~fvw~~L~~~~~~~-----~~~~e~~l~~~ll~~~gV~v~ 399 (447)
T PLN02607 363 AGLFCWMNLSPLLETP-----TREGELALWDSILREVKLNIS 399 (447)
T ss_pred eeEEEEEEchHhhcCC-----CchhHHHHHHHHHHhCCEEEc
Confidence 9999999998642100 012356889999998899863
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=371.83 Aligned_cols=320 Identities=22% Similarity=0.323 Sum_probs=247.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH-HHHHhhcCCCC-CCC--cEEEecChHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC-HKLKEENGLSY-TPD--QILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia-~~l~~~~g~~~-~~~--~i~~t~G~~~al~~~ 171 (429)
++|+|+.|+|++++| +++.++.+.+.. . +|+++.|..+++++++ +++.+.++... .++ +|++|+|+++++..+
T Consensus 95 ~~i~l~~g~p~~~~~-~~~~~~~~~~~~-~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~ 171 (521)
T TIGR03801 95 DIISYVIDQLGFDPD-AFLYEMCDGIIG-D-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYI 171 (521)
T ss_pred HHHhhcCCCCCCCCC-HHHHHHHHHhhc-C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHH
Confidence 479999999999965 444666665432 2 5877778888888877 56666654333 333 899999999999998
Q ss_pred HHH-----hcCCCCEEEEcCCCCCChHHHHHHc--CCEEEEecCCCCCC-----CCCCHHHHHhhcccCCcEEEEcCCCC
Q 014172 172 VLA-----VCSPGDEVIIPAPFWVSYPEMARIA--DATPVILPTRISEN-----FLLDPKVLESKLTEKSRLLILCSPSN 239 (429)
Q Consensus 172 l~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~--g~~~~~v~~~~~~~-----~~~d~e~l~~~l~~~~~~i~l~~p~N 239 (429)
+.+ +++|||+|++++|+|+.|...++.. |++++.++.+++++ |.+|++++++++++++|+|++++|||
T Consensus 172 ~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai~l~nP~N 251 (521)
T TIGR03801 172 FDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKALFVVNPSN 251 (521)
T ss_pred HHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEEEEeCCCC
Confidence 887 7899999999999999999998876 67888888765443 89999999999889999999999999
Q ss_pred CccCCCCHHHHHHHHHHHHhC-CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 240 PTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~-~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
|||.+++.+++++|+++|++| ++++||+||+|..|.+ .+.++... ..+++|+++||||.||++|||+||+++++
T Consensus 252 PTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~--~~~~vI~v~SfSK~fg~~G~RlG~i~~~~ 326 (521)
T TIGR03801 252 PPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAE--LPYNTIGVYSFSKYFGATGWRLGTIALHK 326 (521)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhh--CCCCEEEEEcchhhccCchhhhhhhhcCc
Confidence 999999999999999999974 4899999999999875 23344443 24799999999999999999999999976
Q ss_pred H-----HHH--------HH------------------------HHHhhcccCCCchHHHH-----HHHHHHhcCCCChHH
Q 014172 319 H-----FVA--------AC------------------------NKIQSQFTSGASSISQK-----AGVAALGLGYAGGEV 356 (429)
Q Consensus 319 ~-----~~~--------~l------------------------~~~~~~~~~~~~~~~q~-----aa~~~l~~~~~~~~~ 356 (429)
+ +++ .+ +++....+.+.+.+.|. ++.++++. ..++
T Consensus 327 ~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~---~~~y 403 (521)
T TIGR03801 327 DNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK---ENAY 403 (521)
T ss_pred hHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc---chhH
Confidence 4 221 11 34555666778888776 34445554 4678
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCC-cccCC----CCCCChHHHHHHHHHhCCeec
Q 014172 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGF----GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~-~~~~~----~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++++.|++||+.+.+.| .+ .+...+|+|+||+|++++..... ....| ....++.+|+.+|++++||++
T Consensus 404 ~~~~~~~~~~R~~~l~~~L-g~-~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v 478 (521)
T TIGR03801 404 KAETKDICRRREKLLFRGL-GL-PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGIVL 478 (521)
T ss_pred HHHHHHHHHHHHHHHHHhc-CC-CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCEEE
Confidence 9999999999999999998 22 23345799999999999853100 00000 001257899999999999986
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=358.89 Aligned_cols=300 Identities=23% Similarity=0.422 Sum_probs=256.7
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
+.++++|+.|+|++++|+.+.+++.+.+.. ..+| |..+..+||+++++++. +++++|++|+|+++++..+++
T Consensus 18 ~~~~~~l~~~~~~~~~p~~~~~a~~~~~~~-~~~Y-~~~~~~~lr~~ia~~~~------~~~~~i~it~Ga~~~l~~~~~ 89 (354)
T PRK06358 18 KNMILDFSANINPLGVPESLKQAITENLDK-LVEY-PDPDYLELRKRIASFEQ------LDLENVILGNGATELIFNIVK 89 (354)
T ss_pred ccceEEecCCCCCCCCCHHHHHHHHHHHHh-hhcC-CCccHHHHHHHHHHHhC------CChhhEEECCCHHHHHHHHHH
Confidence 345799999999988899999999987753 5678 45678999999999973 688999999999999999988
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
++ .+ +.|++++|+|+.|...++..|++++.++++.+++|.+| +++.+.+.++++++++++||||||.+++.+++++|
T Consensus 90 ~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~l 166 (354)
T PRK06358 90 VT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLISKEEMKKI 166 (354)
T ss_pred Hh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccCHHHHHHH
Confidence 86 44 68999999999999999999999999999766778899 66666677789999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhccc
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT 332 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~ 332 (429)
+++|++| +++||+||+|.+|.+++.....+..++ ..+++|+++||||.||++|+|+||++++ +++++.+.+....
T Consensus 167 ~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~~~~-- 242 (354)
T PRK06358 167 LDKCEKR-NIYLIIDEAFMDFLEENETISMINYLE-NFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQMREP-- 242 (354)
T ss_pred HHHHHhc-CCEEEEeCcccccCCCccchhHHHhcc-CCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHhCCC--
Confidence 9999999 999999999999988764332233333 3589999999999999999999999985 6788888877653
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCC
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 412 (429)
.+.+.+.|.++..+|+. .+++++.++.++++|+.+.+.|++++|+++.+|+|+ |+|++++ +
T Consensus 243 ~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g~-f~~~~~~--------------~ 303 (354)
T PRK06358 243 WSINTFADLAGQTLLDD----KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYKPSVN-FIFFKLE--------------K 303 (354)
T ss_pred CcchHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCCcce-EEEEEcC--------------c
Confidence 45789999999999974 678889999999999999999999888888888776 7899987 3
Q ss_pred hHHHHHHHHHhCCeec
Q 014172 413 SESLCRYLLDKAQVLL 428 (429)
Q Consensus 413 ~~~~~~~Ll~~~gV~v 428 (429)
..+|+++|+++ ||.|
T Consensus 304 ~~~~~~~l~~~-gI~v 318 (354)
T PRK06358 304 PIDLRKELLKK-GILI 318 (354)
T ss_pred hHHHHHHHHHC-CeEE
Confidence 47899998875 8876
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=355.75 Aligned_cols=322 Identities=30% Similarity=0.482 Sum_probs=267.4
Q ss_pred hHHHHHHHHHHHhc--CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q 014172 80 TVAITDQATALAQA--GVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 80 ~~~~~~~~~~~~~~--g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
++.+.+.+..+... ..++++|+.|.|++++|+.+.+++.+.++.. ..+|++..|.+++|+++++++.+.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~ 95 (394)
T PRK06836 16 IRKMFEEGARLKAEYGADNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLT 95 (394)
T ss_pred HHHHHHHHHHHHhhcCCCCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 34444444443322 3468999999998888899999998877642 467988999999999999999998888889
Q ss_pred CCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEE
Q 014172 155 PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l 234 (429)
+++|++|+|+++++..+++.++++||.|++++|+|..|...++..|++++.++++++ ++.+|+++++++++++++++++
T Consensus 96 ~~~i~~t~G~~~al~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~~~~~~~~v~~ 174 (394)
T PRK06836 96 ADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTD-TFQPDLDALEAAITPKTKAVII 174 (394)
T ss_pred cCcEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCc-cCcCCHHHHHhhcCcCceEEEE
Confidence 999999999999999999999999999999999999999999999999999998753 4679999999999989999999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHh------CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc
Q 014172 235 CSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~I~~~a~~------~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 308 (429)
++||||||.+++.+++++|+++|++ | |++||+||+|.++.|++....++.. ..+++++++||||.||++|
T Consensus 175 ~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~---~~~~~i~~~S~SK~~~~pG 250 (394)
T PRK06836 175 NSPNNPTGVVYSEETLKALAALLEEKSKEYGR-PIYLISDEPYREIVYDGAEVPYIFK---YYDNSIVVYSFSKSLSLPG 250 (394)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHhhhccCC-CeEEEEeccccccccCCCCCCChHH---ccCcEEEEecchhhccCcc
Confidence 9999999999999999999999999 8 9999999999999887543333332 2578999999999999999
Q ss_pred ceeeEEEcCHHHHHH---HHH---Hhhc-ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 014172 309 WRLGYIAGPKHFVAA---CNK---IQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (429)
Q Consensus 309 ~R~G~v~~~~~~~~~---l~~---~~~~-~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~ 381 (429)
+|+||+++++++.+. +.. .... ...+++.+.|.++..++.. . ..++.|+++|+.+.+.|+++ |+
T Consensus 251 lRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~----~~~~~~~~~r~~l~~~L~~~-g~ 321 (394)
T PRK06836 251 ERIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDA----T----VDVSIYKRNRDLLYDGLTEL-GF 321 (394)
T ss_pred eeeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC----h----HHHHHHHHHHHHHHHHHHhC-CC
Confidence 999999998876432 111 1121 1235788899998888875 1 13567889999999999998 89
Q ss_pred eeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 382 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++..|++|||+|++++.. +..++++.|. ++||.|
T Consensus 322 ~~~~~~gg~~~~~~~~~~------------~~~~~~~~l~-~~gv~v 355 (394)
T PRK06836 322 ECVKPQGAFYLFPKSPEE------------DDVAFCEKAK-KHNLLL 355 (394)
T ss_pred EeecCCceEEEEEeCCCC------------CHHHHHHHHH-hCCEEE
Confidence 988999999999998752 6788987765 559875
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-45 Score=359.59 Aligned_cols=322 Identities=23% Similarity=0.310 Sum_probs=261.8
Q ss_pred CcccccccCCc-hhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 68 LSPRVNAVKPS-KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 68 ~s~~~~~~~~~-~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
+.+.+.++.++ ....+...++++...+.++|+|+.|+|++++|+.+.+++.+.. ....| |..+..+||++|+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~n~~p~~~~~~v~~a~~~~~--~~~~Y-p~~~~~~lr~~ia~~~~ 100 (380)
T PLN03026 24 IRKHILQLAPYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPPEVLEALGNMK--FPYVY-PDPESRRLRAALAEDSG 100 (380)
T ss_pred hhHHhhcCCCCCCCCChHHHHHHhCCCccceEEccCCCCCCCCCHHHHHHHHhhH--hhccC-CCCCHHHHHHHHHHHhC
Confidence 44555555554 2223334444444445689999999999999888888876531 12456 55678999999999974
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc-
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL- 225 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l- 225 (429)
+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.++.+ ++|.+|++.+++.+
T Consensus 101 ------~~~~~I~~t~Ga~~~i~~~~~~~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~ 172 (380)
T PLN03026 101 ------LESENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVE 172 (380)
T ss_pred ------cChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHh
Confidence 578999999999999999999999999999999999999999999999999999985 35779999999998
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
++++++|++++||||||.+++.+++++|++. .++||+||+|.+|.+.+. ........+++|+++||||.||
T Consensus 173 ~~~~~~v~l~~P~NPTG~~~~~~~l~~l~~~-----~~~vi~DeaY~~~~~~~~----~~~~~~~~~~viv~~SfSK~~g 243 (380)
T PLN03026 173 THKPKLLFLTSPNNPDGSIISDDDLLKILEL-----PILVVLDEAYIEFSTQES----RMKWVKKYDNLIVLRTFSKRAG 243 (380)
T ss_pred ccCCcEEEEeCCCCCCCCCCCHHHHHHHHhc-----CCEEEEECcchhhcCCcc----hHHHHHhCCCEEEEecchHhhc
Confidence 6789999999999999999997777766653 379999999999876432 1122223589999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
++|+|+||+++++++++.+.+.... .+.+.++|.++.++|++ .+++++.++.++++|+.+.+.|++++++.+ .
T Consensus 244 laGlRiGy~~~~~~~i~~l~~~~~~--~~~~~~~q~aa~~aL~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~ 316 (380)
T PLN03026 244 LAGLRVGYGAFPLSIIEYLWRAKQP--YNVSVAAEVAACAALSN----PKYLEDVKNALVEERERLFGLLKEVPFLEP-Y 316 (380)
T ss_pred CccccceeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHHHHHHHCCCCeE-C
Confidence 9999999999999999999887654 45789999999999975 678999999999999999999999855554 5
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|.+++|+|++++.. .++.+++++|++ +||.|
T Consensus 317 p~~~~f~~~~~~~~-----------~~~~~~~~~l~~-~gI~v 347 (380)
T PLN03026 317 PSDANFILCRVTSG-----------RDAKKLKEDLAK-MGVMV 347 (380)
T ss_pred CCCCeEEEEECCCC-----------CCHHHHHHHHHH-CCeEE
Confidence 78889999998742 267899999985 59876
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=353.26 Aligned_cols=305 Identities=23% Similarity=0.380 Sum_probs=255.7
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEec
Q 014172 83 ITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 162 (429)
Q Consensus 83 ~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~ 162 (429)
+.+.++.+...+.++|+|+.|++++++|+.+.+++.+.+.. ...|+ ..|..+||++|++++. +++++|++|+
T Consensus 18 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~-~~~~~~lr~~ia~~~~------~~~~~I~it~ 89 (357)
T PRK14809 18 IEEVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAER-VHSYP-KASHADLTAALADRWD------VSPEQVWLAN 89 (357)
T ss_pred HHHHHHHhCCCccceeEecCCCCCCCCCHHHHHHHHHHHhh-hhcCC-CCCHHHHHHHHHHHhC------CCcceEEECC
Confidence 33445555445668999999999999999999998887653 56784 5789999999999973 6889999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 163 G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
|+++++.+++++++++||.|++++|+|..|...++..|++++.++++.++++.++++.+++.. +++++|++++||||||
T Consensus 90 G~~~al~~~~~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG 168 (357)
T PRK14809 90 GGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTG 168 (357)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCC
Confidence 999999999999999999999999999999999999999999999876667888999888765 4689999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~ 322 (429)
.+++.+++++|+++|+ + +++||+||+|.++.+.+. .+..+ ...+++++++||||.||++|+|+||+++++++++
T Consensus 169 ~~~s~~~~~~l~~~~~-~-~~~iI~De~y~~~~~~~~---~~~~~-~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~ 242 (357)
T PRK14809 169 SEIPLDEVEALAERTD-E-ETLVVVDEAYGEFAERPS---AVALV-EERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWAD 242 (357)
T ss_pred cCCCHHHHHHHHHhCc-c-CcEEEEechhhhccCCch---hHHHH-hhCCCEEEEecchhHhcCcchhheeeecCHHHHH
Confidence 9999999999999986 4 578999999999876431 11112 2357899999999999999999999999999999
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCC
Q 014172 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 402 (429)
Q Consensus 323 ~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~ 402 (429)
.+.+... ..+.+.++|.++..+|.. .+++++.++.++++|+.+.+.|+.. + .|.+|+|+|++++
T Consensus 243 ~~~~~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-~----~~~~g~f~~~~~~----- 306 (357)
T PRK14809 243 AYARVNT--PFAASELACRAGLAALDD----DEHVERTVETARWAREYIREELDAP-T----WESAGNFVLAEVG----- 306 (357)
T ss_pred HHHHhCC--CCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHhcCc-c----CCCCCCEEEEECC-----
Confidence 9887653 456789999999999874 7889999999999999999999753 2 2577889999884
Q ss_pred cccCCCCCCChHHHHHHHHHhCCeec
Q 014172 403 EAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 403 ~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+|++.|. ++||.|
T Consensus 307 ---------~~~~~~~~l~-~~gv~v 322 (357)
T PRK14809 307 ---------DASAVAEAAQ-ERGVIV 322 (357)
T ss_pred ---------CHHHHHHHHH-HCCEEE
Confidence 4678998875 559876
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=352.47 Aligned_cols=307 Identities=22% Similarity=0.289 Sum_probs=254.3
Q ss_pred HHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 86 QATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 86 ~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
.++++...+.++|+|+.|+|++++|+.+++++.+.+.. ...|+ ..+..+||++||+++. +++++|++|+|++
T Consensus 11 ~~~~~~~~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~~~y~-~~~~~~lr~~ia~~~~------~~~~~i~it~Ga~ 82 (356)
T PRK08056 11 AATVLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDC-AERYP-DVEYRHLHQALARHHQ------VPASWILAGNGET 82 (356)
T ss_pred HHHHhCCChhhEEEeccccCCCCCCHHHHHHHHHHHHh-cccCc-CccHHHHHHHHHHHhC------cChhhEEECCCHH
Confidence 34444444567999999999999999999999887754 34674 4578999999999973 5789999999999
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 166 ~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
+++..+++++ .+|+ +++++|+|..|...++..|++++.+|+++++++.+| +++++.+.+++|+|++++||||||.++
T Consensus 83 ~~l~~~~~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~~ 159 (356)
T PRK08056 83 ESIFAVVSGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLP 159 (356)
T ss_pred HHHHHHHHHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCCC
Confidence 9999998876 6776 677899999999999999999999999766677777 455566778899999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAAC 324 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l 324 (429)
+.+++++|+++|++| +++||+||+|.++.+++....+. +. ..+++++++||||.||++|+|+||+++ ++++++.+
T Consensus 160 ~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~~~--~~-~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l 235 (356)
T PRK08056 160 ERQLLQAIAERCKSL-NIALILDEAFIDFIPDETGFIPQ--LA-DNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARM 235 (356)
T ss_pred CHHHHHHHHHHHHhc-CCEEEEecchhccCCcchHHHHH--hc-cCCCEEEEEechhhccCcchhheeeecCCHHHHHHH
Confidence 999999999999999 99999999999988754322222 22 246899999999999999999999998 46787877
Q ss_pred HHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcc
Q 014172 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~ 404 (429)
.+... ..+++.+.|.++..+++. .+++++.++.++++|+.+.+.|++++|+.+.++ +++|+|++++.
T Consensus 236 ~~~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~------ 302 (356)
T PRK08056 236 RRQQM--PWSINAFAALAGEVILQD----RAYQQATWQWLAEEGARFYQALCALPLLTVWPG-RANYLFLRCER------ 302 (356)
T ss_pred HHhCC--CCchhHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcCC-CCcEEEEEcCC------
Confidence 76543 345778889888888863 678888899999999999999998888877655 67889999873
Q ss_pred cCCCCCCChHHHHHHHHHhCCeec
Q 014172 405 EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+++++|++ +||.|
T Consensus 303 -------~~~~~~~~l~~-~gI~v 318 (356)
T PRK08056 303 -------PDIDLQRALLT-QRILI 318 (356)
T ss_pred -------ChHHHHHHHHH-CCeEE
Confidence 46789999886 49876
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-45 Score=360.72 Aligned_cols=316 Identities=30% Similarity=0.539 Sum_probs=273.9
Q ss_pred CeEEcCCCCCCCC----ChHHHHHHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFD----TPVLIAEAGIN--AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~----~p~~v~~a~~~--~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al 168 (429)
++|+|+.|+++.. +++++.+++.+ ........|++..|.++||+++++++.+..|++++++ +|++++|+.+++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 5899999998887 56667777665 3334578999999999999999999998889889999 999999999999
Q ss_pred HHHHHHh-cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCc
Q 014172 169 LQAVLAV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT 241 (429)
Q Consensus 169 ~~~l~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPt 241 (429)
..++..+ .++||+|++++|+|+.|...++..|++++.++++.++++.+|++.+++.+++ +++++++++|||||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPt 161 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPT 161 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeeccccccc
Confidence 9999999 8899999999999999999999999999999988778889999999999887 57899999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCc-cccCCCCCCceEEEeccChhcccccceeeEEEcCHHH
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~ 320 (429)
|.+++.+++++|+++|++| +++||+||+|.++.++.....+ ...+.. ..+++++.||||.||++|+|+||+++++++
T Consensus 162 G~~~~~~~l~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~ 239 (363)
T PF00155_consen 162 GSVLSLEELRELAELAREY-NIIIIVDEAYSDLIFGDPDFGPIRSLLDE-DDNVIVVGSLSKSFGLPGLRVGYIVAPPEL 239 (363)
T ss_dssp TBB--HHHHHHHHHHHHHT-TSEEEEEETTTTGBSSSSHTHHHHGHHTT-TSTEEEEEESTTTTTSGGGTEEEEEEEHHH
T ss_pred ccccccccccchhhhhccc-ccceeeeeceeccccCCCccCcccccccc-cccceeeeeccccccccccccccccchhhh
Confidence 9999999999999999999 9999999999999887543322 222332 455999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc
Q 014172 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (429)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~ 400 (429)
++.+......+.. +.+.|.++..++.......++++++++.++++++++.+.|++. |+.+.++++|+|+|+.++..
T Consensus 240 ~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~- 315 (363)
T PF00155_consen 240 IERLRRFQRSGLS--SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPPEAGFFLWVRLDPN- 315 (363)
T ss_dssp HHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHSBSSEEEEEESHH-
T ss_pred hhhhhhccccccc--cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeeccCccEEEEEcccc-
Confidence 9999988776654 8888888888887621112388999999999999999999998 99999999999999999753
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+++++|++++||.+
T Consensus 316 -----------~~~~l~~~L~~~~gi~v 332 (363)
T PF00155_consen 316 -----------DAEELAQELLEEYGILV 332 (363)
T ss_dssp -----------HHHHHHHHHHHHHTEEE
T ss_pred -----------hHHHHHHHHHHhCCEEE
Confidence 57899999999988875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=352.54 Aligned_cols=302 Identities=27% Similarity=0.413 Sum_probs=256.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
..|+|+.|+|++++|+.+.+++.+.+.. ....| |..|.++||++|++|+++.+|.++++++|++|+|+++++.+++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~ 105 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLL 105 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHH
Confidence 4699999999999999999999988753 34678 5678999999999999999998899999999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
++++++||.|+++.|+|..|...++..|.+++.++.. +++.+|++.+++++. .++++|++++||||||.+++.++++
T Consensus 106 ~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~~~~~~l~ 183 (368)
T PRK03317 106 QAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTALPLDDVE 183 (368)
T ss_pred HHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccC--CCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999888763 457899999999986 4789999999999999999977776
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~ 331 (429)
+|+++| ++++|+||+|.+|.+.+. .+...+....+++++++||||.||++|+|+||+++++++++.+.....
T Consensus 184 ~l~~~~----~~~lI~DE~y~~~~~~~~--~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~-- 255 (368)
T PRK03317 184 AILDAA----PGIVVVDEAYAEFRRSGT--PSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRL-- 255 (368)
T ss_pred HHHHHC----CceEEEeCCchhhcccCC--cCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCC--
Confidence 666655 689999999999876552 222333222468999999999999999999999999999999887653
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (429)
..+.+.++|.++.++|+. .+++.+.++.++++|+.+.+.|++. |+++.+|+++|++|.+++
T Consensus 256 ~~~~s~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~-------------- 316 (368)
T PRK03317 256 PYHLSAVTQAAARAALRH----ADELLASVAALRAERDRVVAWLREL-GLRVAPSDANFVLFGRFA-------------- 316 (368)
T ss_pred CCCCCHHHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEeCCCCCcEEEEeccC--------------
Confidence 446889999999999975 3445566677899999999999987 888888999999887663
Q ss_pred ChHHHHHHHHHhCCeec
Q 014172 412 NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~v 428 (429)
++.++++.|+++ ||.|
T Consensus 317 ~~~~~~~~l~~~-Gv~v 332 (368)
T PRK03317 317 DRHAVWQGLLDR-GVLI 332 (368)
T ss_pred CHHHHHHHHHHC-CEEE
Confidence 467888888765 9876
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-44 Score=352.85 Aligned_cols=298 Identities=22% Similarity=0.349 Sum_probs=256.6
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.++|+|+.|+|++++++.+.+++.+.+.. ..|.|..|..++|+++++++. +++++|++|+|+++++..++++
T Consensus 29 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~--~~~~p~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 29 EKIVKLASNENPYGPSPKVKEAIAAHLDE--LALYPDGYAPELRTKVAKHLG------VDEEQLLFGAGLDEVIQMISRA 100 (359)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHH--hhcCCCCcHHHHHHHHHHHhC------CCHHHEEECCCHHHHHHHHHHH
Confidence 36899999999998888999999887754 456688899999999999983 5788999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
++++||.|++++|+|+.|...+...|++++.+|++ ++.+|++.+++.++++++++++++||||||.+++.+++.+|+
T Consensus 101 ~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~~~ 177 (359)
T PRK03158 101 LLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNHEELLSFL 177 (359)
T ss_pred HhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999985 356899999999988999999999999999999999888888
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
+.|+ + +++||+||+|.++.+++.....+..+ ...+++++++||||.||++|+|+||+++++++++.+.+.... .+
T Consensus 178 ~~~~-~-~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~--~~ 252 (359)
T PRK03158 178 ESVP-S-HVLVVLDEAYYEYVTAEDYPDTLPLL-EKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP--FN 252 (359)
T ss_pred HhCC-C-CcEEEEECchHhhcCCcccccHHHHH-HhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC--CC
Confidence 8774 7 89999999999988765322222222 235789999999999999999999999999999999877653 46
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChH
Q 014172 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 414 (429)
++.++|.++..+|+. .+|+++.++.++++|+.+.+.|+++ |+.+. |.+|+|+|++++. ++.
T Consensus 253 ~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~~-------------~~~ 313 (359)
T PRK03158 253 TTRIAQYAAIAALED----QAFLKECVEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTGR-------------DAN 313 (359)
T ss_pred CCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECCC-------------CHH
Confidence 899999999999974 6788888999999999999999988 88776 4456789998852 578
Q ss_pred HHHHHHHHhCCeec
Q 014172 415 SLCRYLLDKAQVLL 428 (429)
Q Consensus 415 ~~~~~Ll~~~gV~v 428 (429)
+++++|+++ ||.|
T Consensus 314 ~~~~~l~~~-gv~v 326 (359)
T PRK03158 314 ELFEALLKK-GYIV 326 (359)
T ss_pred HHHHHHHHC-CeEE
Confidence 999999865 8876
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=348.74 Aligned_cols=298 Identities=21% Similarity=0.312 Sum_probs=248.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.++|+|+.|++++++|+.+.+++.+.+.. ..+|++ .+..+||++||+++ + +++++|++|+|++++|.+++++
T Consensus 22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~-~~~Y~~-~~~~~Lr~aia~~~----~--v~~~~I~it~G~~~~i~~~~~~ 93 (360)
T PRK07392 22 DAILDFSASINPLGPPESVIAAIQSALSA-LRHYPD-PDYRELRLALAQHH----Q--LPPEWILPGNGAAELLTWAGRE 93 (360)
T ss_pred ccEEEeCCcCCCCCCCHHHHHHHHHHHHH-hhcCCC-cCHHHHHHHHHHHh----C--cChhhEEECCCHHHHHHHHHHH
Confidence 36899999999999999999998887764 567865 45689999999998 3 6889999999999999999888
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC---CCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF---LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~---~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
+. +||.|++++|+|..|...++..|++++.++++.++++ ..+++.+++.. ++++++++++||||||.+++++
T Consensus 94 l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPTG~~~~~~--- 168 (360)
T PRK07392 94 LA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPTGKLWSRE--- 168 (360)
T ss_pred hC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCCCCCcCHH---
Confidence 65 7899999999999999999999999999999765554 35677776654 4688999999999999999954
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~ 331 (429)
+|.++++++ ++ +|+||+|.+|.+++. ..++.......+++|+++||||.||++|+|+||+++++++++.+.+...
T Consensus 169 ~l~~l~~~~-~~-~IiDE~y~~~~~~~~-~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~~~~-- 243 (360)
T PRK07392 169 AILPLLEQF-AL-VVVDEAFMDFLPPDA-EQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQWRD-- 243 (360)
T ss_pred HHHHHHHHC-CE-EEEECchhhhccCcc-ccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHhhCC--
Confidence 566667788 86 555999999987653 2333332233578999999999999999999999999999988876553
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (429)
..+++.++|.++..+|++ .++.++.++.++++|+.+.+.|++++|+.+. |.+++|+|++++.
T Consensus 244 ~~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~------------- 305 (360)
T PRK07392 244 PWPVNGLAAAAAIAALAD----RDFQQQTWAWLPPAREALFQGLASLPGLTPL-PSAANFLLVQSQG------------- 305 (360)
T ss_pred CCCCCHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCC-------------
Confidence 356899999999999975 5677888888999999999999988888875 5788999999863
Q ss_pred ChHHHHHHHHHhCCeec
Q 014172 412 NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~v 428 (429)
++.+++++|++++||.|
T Consensus 306 ~~~~l~~~ll~~~gv~v 322 (360)
T PRK07392 306 SALQLQEKLLQQHRILI 322 (360)
T ss_pred CHHHHHHHHHhhCCEEE
Confidence 57899999888889986
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=354.40 Aligned_cols=314 Identities=18% Similarity=0.314 Sum_probs=249.4
Q ss_pred CCeEEcCCCCCCCCC-h-HHHHHHHHHHHHcC-----CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 95 VSVIRLAAGEPDFDT-P-VLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~-p-~~v~~a~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
.++|+|+.|.|+..+ | +.+.+++.+.+... ..+|++..|.++||++|++++.+.+|+.+++++|++|+|++++
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~a 109 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSA 109 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHH
Confidence 468999999987544 3 45667776666432 2579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-----CCCEEEE-cCCCCCChHHHHHHcCC----EEEEecCCCCC-CCCCCHHHHHhhcccCCcEEEEcC
Q 014172 168 ILQAVLAVCS-----PGDEVII-PAPFWVSYPEMARIADA----TPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 168 l~~~l~~l~~-----~gd~Vlv-~~p~y~~~~~~~~~~g~----~~~~v~~~~~~-~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
+.++++++++ +||.|++ ++|+|+.|...+...|. .+..+++..++ ++.+|++.++ +.++++++++++
T Consensus 110 l~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~ 187 (416)
T PRK09440 110 FFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDTGAICVSR 187 (416)
T ss_pred HHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCceEEEEec
Confidence 9999999985 6899999 79999999986654442 22233332221 4679999997 456789999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC-CCCCCceEEEeccChhcccccceeeEEE
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~i~~~S~SK~~~~~G~R~G~v~ 315 (429)
||||||.+++.+++++|+++|++| |++||+||+|..+... ..+... +...+++|+++||||. +++|+|+||++
T Consensus 188 P~NPTG~~~s~~~~~~l~~~a~~~-~~~iI~De~Y~~~~~~----~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i 261 (416)
T PRK09440 188 PTNPTGNVLTDEELEKLDALARQH-NIPLLIDNAYGPPFPG----IIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVI 261 (416)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHc-CCcEEEeCCccccCCC----cchhhcCccccCCeEEEeccccc-CCCcceEEEEe
Confidence 999999999999999999999999 9999999999753211 011111 1124789999999996 89999999999
Q ss_pred cCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH-HHHHHHHHHHHHHHHhcc-CC--CceeecCCceEE
Q 014172 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFY 391 (429)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~-~~~~~~~~r~~l~~~L~~-l~--g~~~~~p~~~~~ 391 (429)
+++++++.+.........+++.+.|.++..++.++.. ..++.+ +++.|+++++.+.+.|.+ ++ ++.+..|+||+|
T Consensus 262 ~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p~gg~f 340 (416)
T PRK09440 262 ADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDL-LRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKPEGAIF 340 (416)
T ss_pred CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecCCCceE
Confidence 9999999999888777778999999999999987432 344444 678899999999998876 33 356678999999
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|++++.. + .++.++++.|. ++||.|
T Consensus 341 iw~~~~~~-~---------~~~~~~~~~l~-~~gV~v 366 (416)
T PRK09440 341 LWLWFKDL-P---------ITTEELYQRLK-ARGVLV 366 (416)
T ss_pred EEEECCCC-C---------CCHHHHHHHHH-HCCEEE
Confidence 99999852 0 25788998775 569876
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=378.46 Aligned_cols=329 Identities=19% Similarity=0.266 Sum_probs=263.8
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQA 171 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al~~~ 171 (429)
+|.++|+|+.|+|++++|+.+.+++.+++... .+ ..|.+++++++++++++.+|++.++ ++|++|+|+++++..+
T Consensus 695 ~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~--~~--s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~ll 770 (1082)
T PLN02672 695 QESSLIHMDVDESFLPVPSAVKASIFESFVRQ--NI--SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKL 770 (1082)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhc--CC--CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHH
Confidence 46789999999999999999999999887542 22 3467889999999999999988765 5899999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCC-CCccCCCCHHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPS-NPTGSVYPKNL 249 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~-NPtG~~~~~~~ 249 (429)
+++++++||.|+++.|+|+.|...++..|++++.+|++++++|.+|++.+++++++ +.++|++++|| ||||.+++.++
T Consensus 771 l~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~ee 850 (1082)
T PLN02672 771 VLCCVQEGGTLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSE 850 (1082)
T ss_pred HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHH
Confidence 99999999999999999999999999999999999997777899999999999876 45689999997 99999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCC--Cccc----cCCCC--CCceEEEeccChhcccccceeeEEEcCH-HH
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFA----SLPGM--WERTLTVNGFSKAFAMTGWRLGYIAGPK-HF 320 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~--~~~~----~~~~~--~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~ 320 (429)
+++|+++|++| |++||+||+|.++.|++... .++. .+... ..++++++||||.|+++|||+||+++++ ++
T Consensus 851 Le~Llela~k~-di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~~eL 929 (1082)
T PLN02672 851 IEEILSVCAKY-GARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALNDSVL 929 (1082)
T ss_pred HHHHHHHHHHc-CCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCCHHH
Confidence 99999999999 99999999999999976421 1111 11111 2479999999999999999999999865 58
Q ss_pred HHHHHHHhhcccCCCchHHHHHHHHHHh----cCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEec
Q 014172 321 VAACNKIQSQFTSGASSISQKAGVAALG----LGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~q~aa~~~l~----~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l 396 (429)
++.+.+..... ++....|.++.+++. ......+++.+.++.|+++|+++.+.|+++ |+++.+|+||||+|+++
T Consensus 930 i~~l~~~~~~s--~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~PeGGFfLwl~l 1006 (1082)
T PLN02672 930 IDAFHSAPGLS--RPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVLEPQGGISMVAKP 1006 (1082)
T ss_pred HHHHHHhhhhc--CCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecCCcEEEEEEEc
Confidence 88887754322 233344544444442 110013567788888999999999999998 89999999999999988
Q ss_pred CCccCCcc--cCC----CCCCChHHHHHHHHHhCCeecC
Q 014172 397 STYYGSEA--EGF----GKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 397 ~~~~~~~~--~~~----~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+.+.+... ... +...++.+|+++|++++||.|.
T Consensus 1007 ~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~ 1045 (1082)
T PLN02672 1007 SAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCIN 1045 (1082)
T ss_pred cccccccccccccccccccCCCHHHHHHHHHHcCCEEEe
Confidence 64322100 000 0013688999999999999863
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=349.55 Aligned_cols=294 Identities=21% Similarity=0.291 Sum_probs=252.2
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
++.|+|+.|+|++++|+.+.+++.+.+.. ...|++. +..+||++|++++ | +++++|++|+|+++++..++.+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~Y~~~-~~~~Lr~aia~~~----~--v~~e~I~it~Gs~~ai~~~~~~ 114 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAAL-SGRYDLE-LEDDLRTLFAAQE----G--LPADHVMAYAGSSEPLNYAVLA 114 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCc-hHHHHHHHHHHHh----C--cChhhEEEcCChHHHHHHHHHH
Confidence 46899999999999999999999887753 3468554 5899999999876 4 5889999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
++++||+|++++|+|..|...++..|++++.++++. ++.+|++.+++. .++++++++|+||||||.+++.+++++|+
T Consensus 115 l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~~~~~l~~l~ 191 (370)
T PRK09105 115 FTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVTPRADIEWLL 191 (370)
T ss_pred HcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCcCHHHHHHHH
Confidence 999999999999999999999999999999999863 467899999887 56789999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
+.+ ++ +++||+||+|.+|... ++..++....+++++++||||.||++|+|+||+++++++++.+... . ...
T Consensus 192 ~~~-~~-~~~lIvDEaY~~f~~~----~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~-~--~~~ 262 (370)
T PRK09105 192 ANK-PA-GSVLLVDEAYIHFSDA----PSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF-G--HNP 262 (370)
T ss_pred HhC-CC-CcEEEEECchHHhccC----cchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc-C--CCC
Confidence 875 46 7999999999875421 2334443446889999999999999999999999999999988776 2 334
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChH
Q 014172 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 414 (429)
++.+.|.++.++|.+ .+|+++.++.++++|+.+.+.|+++ |+++.+|+++|| |++++. +..
T Consensus 263 ~~~~~~~aa~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~~f~-~~~~~~-------------~~~ 323 (370)
T PRK09105 263 LPVPAAAAGLASLRD----PKLVPQRRAENAAVREDTIAWLKKK-GYKCTPSQANCF-MVDVKR-------------PAK 323 (370)
T ss_pred cCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCCcCCCCCcEE-EEeCCC-------------CHH
Confidence 788899999999975 6789999999999999999999998 888888888887 577752 678
Q ss_pred HHHHHHHHhCCeec
Q 014172 415 SLCRYLLDKAQVLL 428 (429)
Q Consensus 415 ~~~~~Ll~~~gV~v 428 (429)
+++++|+++ ||.|
T Consensus 324 ~l~~~L~~~-gI~v 336 (370)
T PRK09105 324 AVADAMAKQ-GVFI 336 (370)
T ss_pred HHHHHHHHC-CcEE
Confidence 999999877 9876
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=351.23 Aligned_cols=301 Identities=23% Similarity=0.332 Sum_probs=254.9
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.+.++|+|+.|+|++.+|+.+.+++.+... ...+|++..| .+||+++++++ | +++++|++|+|+++++..++
T Consensus 34 ~~~~~i~l~~~~~~~~~~~~~~~al~~~~~-~~~~Y~~~~g-~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~ 105 (371)
T PRK05166 34 GVPRIAKLGSNENPLGPSPAVRRAFADIAE-LLRLYPDPQG-RALREAIAART----G--VPADRIILGNGSEDLIAVIC 105 (371)
T ss_pred CCcceEEcCCCCCCCCCCHHHHHHHHHHHH-HhhcCCCCcH-HHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHH
Confidence 345799999999999888899998887543 3567988788 59999999986 3 57889999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
.+++++||.|+++.|+|+.+...++..|++++.++++. ++.+|++++++.++++++++++++||||||.+++.+++++
T Consensus 106 ~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~ 183 (371)
T PRK05166 106 RAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLTADQLAR 183 (371)
T ss_pred HHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999864 3568999999999888999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCcccc-CCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ 330 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~ 330 (429)
|+++|+ + +++||+||+|.++.+++. .++... +....+++|+++||||.||++|+|+||+++ ++++++.+.+...
T Consensus 184 l~~~~~-~-~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~~~- 259 (371)
T PRK05166 184 VLDATP-P-ETLIVVDEAYAEYAAGDD-YPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRVRT- 259 (371)
T ss_pred HHHhCC-C-CcEEEEECcHHHhcCCcC-cccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHhcc-
Confidence 999986 4 688999999999886542 223322 222346899999999999999999999875 7888888876653
Q ss_pred ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCC
Q 014172 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 331 ~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
..+++.++|.++.++|.. .+++++.++.++++|+.+.+.|++. |+.+. |.+|+|+|++++.
T Consensus 260 -~~~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-p~~g~fl~~~~~~------------ 320 (371)
T PRK05166 260 -PFNVNGAAQAAALAALDD----EEHLAKGVALALAERERLKKELAEM-GYRIA-PSRANFLFFDARR------------ 320 (371)
T ss_pred -CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-cCeeC-CCcCCEEEEeCCC------------
Confidence 345789999888888874 6789999999999999999999988 88764 6667889999752
Q ss_pred CChHHHHHHHHHhCCeec
Q 014172 411 ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v 428 (429)
++.++++.|+++ ||.+
T Consensus 321 -~~~~l~~~l~~~-gi~v 336 (371)
T PRK05166 321 -PASAVAEALLRQ-GVIV 336 (371)
T ss_pred -CHHHHHHHHHHC-CeEE
Confidence 578999999876 8876
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=338.71 Aligned_cols=296 Identities=31% Similarity=0.489 Sum_probs=258.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++++|+.|++++++|+.+.+++.+.+. ..++| |.+...+|+++++++++. .++++|++++|+++.|..+++++
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~-~~~rY-Pd~~~~~l~~a~a~~~~~-----~~~~~V~~gnGsde~i~~l~~~~ 95 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD-KLNRY-PDPDYRELRAALAEYYGV-----VDPENVLVGNGSDELIELLVRAF 95 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH-hhccC-CCCcHHHHHHHHHHHhCC-----CCcceEEEcCChHHHHHHHHHHh
Confidence 589999999999999999999988876 46778 666889999999999742 47789999999999999999999
Q ss_pred cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~ 255 (429)
+.+||+|+++.|+|..|...++..|++++.++..+ |.+|++.+.+.+.+++++|++||||||||..++.++++++++
T Consensus 96 ~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~ 172 (356)
T COG0079 96 VEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLE 172 (356)
T ss_pred hcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999864 889999999999989999999999999999999999999999
Q ss_pred HHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCC
Q 014172 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (429)
Q Consensus 256 ~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~ 335 (429)
.+.+ +.+||+||+|.+|.- .+...+...+++++++.||||.||++|+|+||+++++++++.+.+++.+|+ .
T Consensus 173 ~~~~--~~~vVvDEAY~eF~~-----~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~~--v 243 (356)
T COG0079 173 ALPE--GGLVVIDEAYIEFSP-----ESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPFN--V 243 (356)
T ss_pred hCCC--CcEEEEeCchhhcCC-----chhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCCC--C
Confidence 8876 478888999999753 222222224678999999999999999999999999999999999998876 7
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHH
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 415 (429)
+.+++.++.++|.+ .+++++.++.....|+++.+.|+++ |+.-+.|..+.|++++++.. . ...
T Consensus 244 ~~~a~~aa~aal~~----~~~~~~~~~~~~~~r~rl~~~l~~~-~~~~v~pS~aNFvlv~~~~~-----------~-~~~ 306 (356)
T COG0079 244 SSPALAAAIAALRD----ADYLEESVERIREERERLYAALKAL-GLFGVFPSQANFVLVRVPDA-----------E-AAA 306 (356)
T ss_pred CHHHHHHHHHHccc----HHHHHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcEEEEECCCc-----------c-HHH
Confidence 89999999999996 6899999999999999999999998 45523455577799999742 2 567
Q ss_pred HHHHHHHhCCeec
Q 014172 416 LCRYLLDKAQVLL 428 (429)
Q Consensus 416 ~~~~Ll~~~gV~v 428 (429)
+.++|+++ ||.|
T Consensus 307 l~~~L~~~-giiv 318 (356)
T COG0079 307 LAEALLKK-GILV 318 (356)
T ss_pred HHHHHHHC-CEEE
Confidence 88888877 8875
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=343.20 Aligned_cols=300 Identities=23% Similarity=0.297 Sum_probs=254.7
Q ss_pred cCCC-eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 93 AGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 93 ~g~~-~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.|.+ .|+|+.|+|++++|+.+.+++.+.+.. ...|++. +..+||++||+++ + +++++|++|+|+++++..+
T Consensus 29 ~g~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~-~~~Y~~~-~~~~Lr~~ia~~~----~--~~~~~I~it~G~~~~l~~~ 100 (369)
T PRK08153 29 RGRPFRARIGANESGFGPSPSVIAAMREAAAE-IWKYGDP-ENHDLRHALAAHH----G--VAPENIMVGEGIDGLLGLI 100 (369)
T ss_pred cCCcceeEecCCCCCCCCCHHHHHHHHHHHHH-hhcCCCC-ccHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHH
Confidence 5665 469999999999999999999887643 4578654 6899999999997 3 6789999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc-ccCCcEEEEcCCCCCccCCCCHHHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l-~~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
+.+++++||.|++++|+|+.+...++..|++++.+|++.+ .+|++.+++.+ ..+++++++++||||||.+++.+++
T Consensus 101 ~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~~~l 177 (369)
T PRK08153 101 VRLYVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALLDAARRENAPLVYLANPDNPMGSWHPAADI 177 (369)
T ss_pred HHHhcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999998532 47999998766 4678999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhc
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~ 330 (429)
++|+++|+ + +++||+||+|.++.+++. ..+ +....+++|+++||||.||++|+|+||+++++++++.+.+....
T Consensus 178 ~~l~~~~~-~-~~~lI~DE~y~~~~~~~~-~~~---~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~ 251 (369)
T PRK08153 178 VAFIEALP-E-TTLLVLDEAYCETAPAGA-APP---IDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH 251 (369)
T ss_pred HHHHHhCC-C-CcEEEEeCchhhhcCccc-chh---hhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcC
Confidence 99999886 5 789999999999877542 222 22235789999999999999999999999999999998877654
Q ss_pred ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCC
Q 014172 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 331 ~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
.+.+.++|.++..+|++ .+++++.++.++++|+.+.+.|++. |+.+. |.+++|+|++++.. .
T Consensus 252 --~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~----------~ 313 (369)
T PRK08153 252 --FGMNRIAQAAALAALKD----QAYLAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRD----------G 313 (369)
T ss_pred --CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCC----------c
Confidence 46899999999999974 6789999999999999999999987 77654 78889999998631 0
Q ss_pred CChHHHHHHHHHhCCeec
Q 014172 411 ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v 428 (429)
....++.++|+++ ||.+
T Consensus 314 ~~a~~l~~~l~~~-Gi~v 330 (369)
T PRK08153 314 AFARAVLDGLIAR-DIFV 330 (369)
T ss_pred ccHHHHHHHHHHC-CeEE
Confidence 2477888888765 9876
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=343.51 Aligned_cols=294 Identities=21% Similarity=0.356 Sum_probs=249.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.++|+|+.|+|++++|+.+.+++.+.+......|+ ..|..+||++||++++ +++++|++|+|+++++.+++++
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~~lr~aia~~~~------~~~~~I~it~G~~~al~~~~~~ 96 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYP-DPNADALRQAIAAYYG------LDPEQVFVGNGSDEVLAHAFLA 96 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCC-CCcHHHHHHHHHHHhC------CCHHHEEEcCCHHHHHHHHHHH
Confidence 46899999999999899999999988765567784 5577999999999974 6889999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
++++||+|++++|+|+.|...++..|++++.++++ +++.+|++.+++ +++++++++||||||.+++.+++++|+
T Consensus 97 l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~~~~~~~~l~ 170 (353)
T PRK05387 97 FFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLD--DDFSIDVEDYLR----PNGGIIFPNPNAPTGIALPLAEIERIL 170 (353)
T ss_pred hcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecC--CCCCCCHHHHHh----cCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999985 357799999874 467889999999999999988888888
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc-cC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-TS 333 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~-~~ 333 (429)
+.+ + +++||+||+|.++ ++....++ ....+++++++||||.||++|+|+||+++++++++.+....... ..
T Consensus 171 ~~~--~-~~~livDe~y~~~--~~~~~~~~---~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~~~~~ 242 (353)
T PRK05387 171 AAN--P-DSVVVIDEAYVDF--GGESAIPL---IDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNSFNSY 242 (353)
T ss_pred HhC--C-CcEEEEeCccccc--CCcchHHH---HhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhccCCCC
Confidence 754 3 7999999999874 33222222 22357899999999999999999999999999999988776543 34
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
+++.+.|.++..++.. .+++++.++.++++|+.+.+.|+++ |+++. |.+++|+|++++.. ++
T Consensus 243 ~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~ 304 (353)
T PRK05387 243 PLDRLAQAGAIAAIED----EAYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSH------------DA 304 (353)
T ss_pred CcCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCC------------CH
Confidence 6789999999998874 6778889999999999999999998 88764 66778899998742 68
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
.+++++|.++ ||.|
T Consensus 305 ~~~~~~l~~~-gi~v 318 (353)
T PRK05387 305 AELAAKLRER-GIIV 318 (353)
T ss_pred HHHHHHHHHC-CEEE
Confidence 8999998655 9876
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=346.61 Aligned_cols=316 Identities=19% Similarity=0.233 Sum_probs=244.3
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHH----cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC---CCcEEEecChHHHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIR----EGFTRYTPNAGTLELRSAICHKLKEENGLSYT---PDQILVSNGAKQSIL 169 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~---~~~i~~t~G~~~al~ 169 (429)
.++.++|.-.-+..+.+.+++.+.+. ....+|++..|.++||+++++++.+..+ .+. .++|++|+|+++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~ 83 (388)
T PRK08637 5 KYNATIGMATEKGGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLS 83 (388)
T ss_pred ceecceeeEecCCCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHH
Confidence 45666665221112244444444333 2467899999999999999999877553 233 268999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCCCCHHHHHhhcc----cCCcEEEEcCCCCCccCC
Q 014172 170 QAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSV 244 (429)
Q Consensus 170 ~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~l~----~~~~~i~l~~p~NPtG~~ 244 (429)
+++.+++++||.|++++|+|+.|...+. ..|++++.+|+..+ ++++|++.+++.++ +..+++++++||||||.+
T Consensus 84 ~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~vv~v~~~~~-~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~ 162 (388)
T PRK08637 84 LVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAEIVTYPIFDE-DGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYT 162 (388)
T ss_pred HHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCEEEEecccCC-CCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCC
Confidence 9999999999999999999999998764 68999999998422 34589999998876 344566789999999999
Q ss_pred CCHHHHHHHHHHHHh-----CCCeEEEEccCCcccccCCCCCCcc-ccCCCCCCce--EEEeccChhcccccceeeEEEc
Q 014172 245 YPKNLLDEIARIVAK-----HPRLLVLSDEIYEHIIYAPATHTSF-ASLPGMWERT--LTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~-----~~~i~vi~Deay~~~~~~~~~~~~~-~~~~~~~~~~--i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
++.+++++|+++|++ | +++||+||+|.++.|++....++ ..+....+++ ++++||||.++++|+|+||+++
T Consensus 163 ~s~~~~~~l~~~~~~~~~~~~-~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~ 241 (388)
T PRK08637 163 PTEKEATAIVEAIKELADAGT-KVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITF 241 (388)
T ss_pred CCHHHHHHHHHHHHHHHhcCC-cEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEE
Confidence 999999999999875 8 99999999999999977544443 2333334674 4567999999999999999985
Q ss_pred C------HHHHHHHHHHh----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC---CCcee
Q 014172 317 P------KHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKM 383 (429)
Q Consensus 317 ~------~~~~~~l~~~~----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l---~g~~~ 383 (429)
+ +++++.+.+.. .....+++.+.|.++..+|.++.. ..++++.+..++++++.+.+.|+.. +++.+
T Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~ 320 (388)
T PRK08637 242 GTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPEF-DKEKQEKFQILKERYEKTKEVLYDGKYDDAWQA 320 (388)
T ss_pred ccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Confidence 4 67777776421 223346899999999999976322 3456667778999999999988764 26788
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+|++|||+|++++.. ++.+|+++|++++||.+
T Consensus 321 ~~~~~g~~~~~~l~~~------------~~~~l~~~l~~~~gv~~ 353 (388)
T PRK08637 321 YPFNSGYFMCLKLKGV------------DAEELRVHLLEKYGIGT 353 (388)
T ss_pred ccccceEEEEecCChH------------HHHHHHHHHhhhcceEE
Confidence 8899999999999742 67899999988889875
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=342.07 Aligned_cols=324 Identities=25% Similarity=0.426 Sum_probs=265.5
Q ss_pred cccccccCCchh-HHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKT-VAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~-~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++.++.++.. ..+...++++ .+.++|+|+.|+|++++|+.+.+++.+.+.. ...|++. +..+||+++|++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y~~~-~~~~lr~~ia~~~~- 81 (367)
T PRK02731 7 NPGILDIAPYVPGKPIEELVREY--GIADIIKLASNENPLGPSPKAIEAIRAAADE-LHRYPDG-SGFELKAALAEKFG- 81 (367)
T ss_pred hhhhcccCCcCCCCCHHHHHHhc--CCCceEEecCCCCCCCCCHHHHHHHHHHHHh-hcCCCCC-cHHHHHHHHHHHhC-
Confidence 344445554422 2233334443 5667999999999998888999999888754 5678654 45799999999973
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
+++++|++|+|+++++..++.+++++||+|++++|+|..|...++..|++++.++. +++.+|++.+++.+++
T Consensus 82 -----~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~---~~~~~~~~~l~~~~~~ 153 (367)
T PRK02731 82 -----VDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPA---KDYGHDLDAMLAAVTP 153 (367)
T ss_pred -----cCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEecc---cCCCCCHHHHHHHhCC
Confidence 57789999999999999999999999999999999999999889999999999987 3467899999999988
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
++++|++++||||||.+++.+++++|++.|+ + ++++|+||+|.++.+++....++..+ ...+++++++||||.||++
T Consensus 154 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~-~~~li~De~y~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~g~~ 230 (367)
T PRK02731 154 RTRLVFIANPNNPTGTYLPAEEVERFLAGVP-P-DVLVVLDEAYAEYVRRKDYEDGLELV-AKFPNVVVTRTFSKAYGLA 230 (367)
T ss_pred CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCC-C-CcEEEEECcHHHhccCcCcccHHHHH-hhcCCEEEEeeehHhhcCc
Confidence 9999999999999999999999999988874 6 89999999999988765433333222 2357899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.+....+ +.+.++|.++..++++ .+++++.++.++++++.+.+.|+++ |+.+. |.
T Consensus 231 G~RiG~l~~~~~~~~~l~~~~~~~--~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~ 302 (367)
T PRK02731 231 GLRVGYGIAPPEIIDALNRVRQPF--NVNSLALAAAVAALDD----DAFVEKSRALNAEGMAWLTEFLAEL-GLEYI-PS 302 (367)
T ss_pred ccceeeeeCCHHHHHHHHHccCCC--CCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CC
Confidence 999999999999999988765543 4678999999999974 6788899999999999999999998 88776 45
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+|+|++++.. .++.+++++|.++ ||.|
T Consensus 303 ~g~~~~i~~~~~-----------~~~~~~~~~L~~~-gI~v 331 (367)
T PRK02731 303 VGNFILVDFDDG-----------KDAAEAYQALLKR-GVIV 331 (367)
T ss_pred CceEEEEECCCC-----------CCHHHHHHHHHHC-CEEE
Confidence 678899999643 3688999998765 9876
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=335.31 Aligned_cols=290 Identities=22% Similarity=0.346 Sum_probs=236.7
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.+.++|+|+.|+|++++|+.+.+++.+++..+. ..| +..|..+||+++++++++.+ +++++|++|+|++++|.++
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y-~~~~~~~Lr~aia~~~~~~~---~~~~~i~it~Ga~~~i~~~ 92 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIY-YDSPDEELIEKILSYLDTDF---LSKNNVSVGNGADEIIYVM 92 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcC-CCCChHHHHHHHHHHhCCCC---CCcceEEEcCCHHHHHHHH
Confidence 345799999999999999999999988775443 336 45589999999999997542 6789999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
++++ |.|++++|+|+.|...++..|++++.+|++.+ +.++.+. + .+++++++++||||||.+++.++++
T Consensus 93 ~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~----~-~~~~~i~i~nP~NPTG~~~s~~~l~ 161 (335)
T PRK14808 93 MLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKD--LRIPEVN----V-GEGDVVFIPNPNNPTGHVFEREEIE 161 (335)
T ss_pred HHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCCc--CCCChhH----c-cCCCEEEEeCCCCCCCCCcCHHHHH
Confidence 9887 67999999999999999999999999998643 4444332 2 3568999999999999999988877
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~ 331 (429)
+|+ ++ +++||+||+|.+|. +....+ +....+++++++||||.||++|+|+||+++++++++.+.+.+..
T Consensus 162 ~l~----~~-~~~ii~DE~Y~~f~--~~~~~~---~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~~- 230 (335)
T PRK14808 162 RIL----KT-GAFVALDEAYYEFH--GESYVD---LLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLP- 230 (335)
T ss_pred HHH----hc-CCEEEEECchhhhc--CCchHH---HHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcCC-
Confidence 775 47 89999999999864 221112 11234789999999999999999999999999999999876633
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (429)
.+.+.++|.++..+++. .++..+..+.++++|+.+.+.|+++ |+++.+|+|+ |+|+.++..
T Consensus 231 -~~~~~~~q~a~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~l~~~------------ 291 (335)
T PRK14808 231 -FNVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFIFMEKE------------ 291 (335)
T ss_pred -CCCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCe-EEEEeCCCc------------
Confidence 45788999999888874 4677788888889999999999998 8888877665 579999742
Q ss_pred ChHHHHHHHHHhCCeec
Q 014172 412 NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~v 428 (429)
+..++.++|.++ ||.|
T Consensus 292 ~~~~~~~~l~~~-Gi~V 307 (335)
T PRK14808 292 EKERLLEHLRAK-NIAV 307 (335)
T ss_pred cHHHHHHHHHHC-CeEE
Confidence 567888877665 9876
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=335.29 Aligned_cols=328 Identities=27% Similarity=0.422 Sum_probs=271.3
Q ss_pred cccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCC
Q 014172 73 NAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 151 (429)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~ 151 (429)
.++++..+..+........ ++.++|+|+.|++.+++++.+.+++.+.+..+ ...|.+..|..+||++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~----- 80 (380)
T PRK06225 7 AKVPPSGFKTSNEFFDYVF-KDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLG----- 80 (380)
T ss_pred cccCcchhhhHHHHHHHHh-hcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcC-----
Confidence 3455555555555454443 34579999999999999999999999988753 4668888899999999999973
Q ss_pred CCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC-CCCCCCCHHHHHhhcccCCc
Q 014172 152 SYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTEKSR 230 (429)
Q Consensus 152 ~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~l~~~~~ 230 (429)
+++++|++|+|+++++..++++++.+||+|++++|+|..+...++..|++++.++++. +++|.+|++.+++.++++++
T Consensus 81 -~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~ 159 (380)
T PRK06225 81 -LDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDENTR 159 (380)
T ss_pred -CCCCcEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCCce
Confidence 5778999999999999999999999999999999999999999999999999999743 34678999999999998999
Q ss_pred EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccce
Q 014172 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (429)
Q Consensus 231 ~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 310 (429)
++++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.++. .+...+. .++++++.||||.+|++|+|
T Consensus 160 ~v~l~~p~NptG~~~~~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~---~~~~~~~--~~~~i~~~s~SK~~g~~G~R 233 (380)
T PRK06225 160 LIYLIDPLNPLGSSYTEEEIKEFAEIARDN-DAFLLHDCTYRDFAREH---TLAAEYA--PEHTVTSYSFSKIFGMAGLR 233 (380)
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHC-CcEEEEehhHHHHhccC---CchhhcC--CCCEEEEeechhhcCCccce
Confidence 999999999999999999999999999999 99999999998765321 2222222 47889999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-ecCCce
Q 014172 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGA 389 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~~p~~~ 389 (429)
+||+++++++++.+..... ...+.+.++|.++..++.. ..+++++.++.++++++.+.+.|++++|+.+ ..|.+|
T Consensus 234 iG~i~~~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g 309 (380)
T PRK06225 234 IGAVVATPDLIEVVKSIVI-NDLGTNVIAQEAAIAGLKV---KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHG 309 (380)
T ss_pred eEEEecCHHHHHHHHHHHh-cccCCCHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCC
Confidence 9999999999998877643 3456788999998888875 3677888888899999999999998767543 246667
Q ss_pred EEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 390 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+|++++.. + .+..+++++|.+ +||.+
T Consensus 310 ~~~~~~~~~~-~---------~~~~~l~~~l~~-~gi~v 337 (380)
T PRK06225 310 NMMVIDISEA-G---------IDPEDLVEYLLE-RKIFV 337 (380)
T ss_pred eEEEEEcccc-c---------CCHHHHHHHHHH-CCEEE
Confidence 7889998642 0 267899999885 48875
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=334.58 Aligned_cols=292 Identities=25% Similarity=0.457 Sum_probs=243.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
..++|+.|+|++++|+.+.+++.+.+.. ...+|++ .+..+||+++|+++. +++++|++|+|+++++..++.+
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~------~~~~~i~it~G~~~~l~~~~~~ 95 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYCS------VVPTNIFVGNGSDEIIHLIMLA 95 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHhC------CCcccEEEecCHHHHHHHHHHH
Confidence 4799999999999999999999887764 3466854 457899999999973 5789999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
++++||+|++++|+|..|...++..|++++.++++ +++.+|++.+++++++ ++|+|++++||||||.+++.+++
T Consensus 96 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~~~l--- 170 (351)
T PRK14807 96 FINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK--EDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIEREDI--- 170 (351)
T ss_pred hcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHH---
Confidence 99999999999999999999999999999999985 3467999999999975 89999999999999999995555
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~ 333 (429)
.++|+++ +.++|+||+|.++ + +....+. + ...+++|+++||||.||++|+|+||+++++++++.+...... .
T Consensus 171 ~~l~~~~-~~~~ivDe~y~~~-~-~~~~~~~--~-~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~--~ 242 (351)
T PRK14807 171 IKIIEKS-RGIVVVDEAYFEF-Y-GNTIVDV--I-NEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP--Y 242 (351)
T ss_pred HHHHHhC-CCEEEEeCcchhh-c-ccchHHH--h-hhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC--C
Confidence 4555566 6788899999886 3 2222222 1 235789999999999999999999999999999999876553 4
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
+.+.++|.++..+++. .++++..+.++++|+.+.+.|++++|+.+. |.+|+|+|++++ ++
T Consensus 243 ~~~~~~q~~~~~~l~~-----~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~--------------~~ 302 (351)
T PRK14807 243 NINSLSQVIALKVLRT-----GVLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFK--------------DA 302 (351)
T ss_pred CcCHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcC--------------CH
Confidence 4788999999999874 356777788899999999999888888875 555678999986 46
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
.++++.|+++ ||.|
T Consensus 303 ~~~~~~l~~~-gV~v 316 (351)
T PRK14807 303 DYVYQGLLER-GILV 316 (351)
T ss_pred HHHHHHHHHC-CEEE
Confidence 7888887765 8876
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=337.91 Aligned_cols=294 Identities=24% Similarity=0.404 Sum_probs=247.6
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHHHHHH
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQA 171 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al~~~ 171 (429)
+.++|+|+.|+|++++|+.+++++.+.+.. ...+|++ .|..+||++++++++ +.+ ++|++|+|+++++..+
T Consensus 25 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~------~~~~~~I~~t~G~~~~i~~~ 97 (356)
T PRK04870 25 ATGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMG------VPAGADVLLGNGSDELIQLL 97 (356)
T ss_pred CCCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC------cCCCCcEEEcCCHHHHHHHH
Confidence 347999999999999999999999998864 3567865 788999999999974 233 5899999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
+++++++||+|++++|+|..|...++..|++++.++++ +++.+|++.+++++. .++++|++++||||||.+++.+++
T Consensus 98 ~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~--~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~~~~~~ 175 (356)
T PRK04870 98 ALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLT--ADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLFDDADV 175 (356)
T ss_pred HHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCC--CCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999986 347799999999986 489999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhc
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~ 330 (429)
++|+++| + +++|+||+|.+|.+.. .... +. ..+++++++|||| ++++|+|+||+++++++++.+......
T Consensus 176 ~~i~~~~--~--~~ii~De~y~~~~~~~-~~~~---~~-~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~ 245 (356)
T PRK04870 176 ERIIEAA--P--GLVVVDEAYQPFAGDS-WLPR---LA-RFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPP 245 (356)
T ss_pred HHHHHHC--C--CEEEEECCchhhcCcc-hHHH---Hh-hCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCC
Confidence 9999988 3 5788899999875432 1111 22 2468999999999 899999999999999999998876543
Q ss_pred ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCC
Q 014172 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 331 ~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
.+.+.++|.++..+++. .+++++.++.++++|+.+.+.|++++|+.+. |.+++|+|++++
T Consensus 246 --~~~~~~~q~~a~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~------------- 305 (356)
T PRK04870 246 --YNVNVLTQATALFALEH----VDVLDAQAAQLRAERTRLAAALAALPGVTVF-PSAANFILVRVP------------- 305 (356)
T ss_pred --CcCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC-------------
Confidence 35788999988888874 4668888999999999999999998888764 666778999986
Q ss_pred CChHHHHHHHHHhCCeec
Q 014172 411 ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v 428 (429)
+..++++.| +++||.|
T Consensus 306 -~~~~~~~~l-~~~gI~v 321 (356)
T PRK04870 306 -DAAAVFDGL-KTRGVLV 321 (356)
T ss_pred -CHHHHHHHH-HHCCEEE
Confidence 356788766 4559986
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=338.40 Aligned_cols=291 Identities=23% Similarity=0.384 Sum_probs=242.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
..|+|+.|++++++|+.+. .....+| |.....+|++++++++ | +++++|++|+|+++++.++++++
T Consensus 29 ~~~~l~~Nenp~~~~~~~~-------~~~~~~Y-p~~~~~~l~~~~a~~~----g--~~~~~I~~~~Gs~e~i~~~~~~~ 94 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQLT-------QQTLNRY-PECQPKAVIENYAAYA----G--VKPEQVLVSRGADEGIELLIRAF 94 (351)
T ss_pred CceEecCCCCCCCCChhhc-------ccccccC-CCCChHHHHHHHHHHh----C--CCHHHEEEcCCHHHHHHHHHHHh
Confidence 4699999999999886531 1234567 5555678888888876 4 68899999999999999999999
Q ss_pred cCCC-CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 176 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 176 ~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
+++| |.|+++.|+|..|...++..|++++.+|++. +|.+|++.+++++ +++++|++||||||||.+++.+++++|+
T Consensus 95 ~~~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~ 171 (351)
T PRK01688 95 CEPGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD--NWQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLL 171 (351)
T ss_pred cCCCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9997 9999999999999999999999999999853 4789999999988 5899999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
+.|++ +.+||+||+|.+|... .+...+....+++++++||||.||++|+|+||+++++++++.+.+....+ +
T Consensus 172 ~~~~~--~~~vivDEay~~f~~~----~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~--~ 243 (351)
T PRK01688 172 ELTRG--KAIVVADEAYIEFCPQ----ASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVINLLLKVIAPY--P 243 (351)
T ss_pred HhCCC--CcEEEEECchhhcCCC----CChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHHHHHhccCCC--C
Confidence 99875 4679999999987532 13333333367999999999999999999999999999999998876554 4
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChH
Q 014172 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 414 (429)
.+.+.|.++.++|.+. ..+++++.++.++++|+++.+.|++++|++.+.|.+++|+|++++ ++.
T Consensus 244 v~~~~~~~a~~~L~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~--------------~~~ 307 (351)
T PRK01688 244 LSTPVADIAAQALSPQ--GIAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFT--------------ASS 307 (351)
T ss_pred CCHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------CHH
Confidence 6778888888888752 246788888999999999999999987776455777888999885 467
Q ss_pred HHHHHHHHhCCeec
Q 014172 415 SLCRYLLDKAQVLL 428 (429)
Q Consensus 415 ~~~~~Ll~~~gV~v 428 (429)
+++++|+++ ||.|
T Consensus 308 ~l~~~L~~~-gi~v 320 (351)
T PRK01688 308 AVFKSLWDQ-GIIL 320 (351)
T ss_pred HHHHHHHHC-CeEE
Confidence 899998865 8876
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=333.62 Aligned_cols=293 Identities=26% Similarity=0.426 Sum_probs=240.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
..+.|+.+++++++++... ....+|+ ..+..+||++|+++++ +++++|++|+|+++++.+++.++
T Consensus 32 ~~~~~~~ne~~~~~~~~~~--------~~~~~Y~-~~~~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~~~ 96 (364)
T PRK04781 32 GDVWLNANESAWANPADPD--------ASTRRYP-DPQPPGLRSALAALYG------CAPEQLLIGRGSDEAIDLLVRAL 96 (364)
T ss_pred CCEEeeCCCCCCCCChhhc--------chhccCC-CCCHHHHHHHHHHHhC------cChHHEEEeCCHHHHHHHHHHHh
Confidence 3689999999888765311 1235684 4457999999999973 57899999999999999999999
Q ss_pred cCCC-CEEEEcCCCCCChHHHHHHcCCEEEEecCCC-CCCCCCCHHHHHhh-cccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 176 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESK-LTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 176 ~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~-l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
+.+| |.|++++|+|..|...++..|++++.+|++. ++++.+|++++.+. .++++++|++++||||||.+++.+++++
T Consensus 97 ~~~g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~ 176 (364)
T PRK04781 97 CVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIER 176 (364)
T ss_pred cCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHH
Confidence 9999 7999999999999999999999999999853 35677899998654 4678999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhccc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~ 332 (429)
|++.|+ + +++||+||+|.+|.+.. +...+....+++|+++||||.||++|+|+||+++++++++.+.+....+
T Consensus 177 l~~~~~-~-~~~iI~Deay~~f~~~~----~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~- 249 (364)
T PRK04781 177 ALQALQ-G-KALVVVDEAYGEFSDVP----SAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY- 249 (364)
T ss_pred HHHhCC-C-CcEEEEeCcchhhcCCc----chHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHHHHHhccCCC-
Confidence 999885 5 68999999999987532 2222223368899999999999999999999999999999998876654
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCC
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 412 (429)
+.+.+.|.++..+|.++ ..+++.+.++.++++|+.+.+.|++++|+....|.+|+|+|++++ +
T Consensus 250 -~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~--------------~ 312 (364)
T PRK04781 250 -PVPTPCAALAEQALSAP--ALAVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFD--------------D 312 (364)
T ss_pred -CCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcC--------------C
Confidence 57889999999999863 135666777789999999999999987875456788899999986 3
Q ss_pred hHHHHHHHHHhCCeec
Q 014172 413 SESLCRYLLDKAQVLL 428 (429)
Q Consensus 413 ~~~~~~~Ll~~~gV~v 428 (429)
..++.+.|.+ +||.|
T Consensus 313 ~~~~~~~l~~-~gI~v 327 (364)
T PRK04781 313 AEAAFQALLA-AGVVV 327 (364)
T ss_pred HHHHHHHHHH-CCeEE
Confidence 5678877764 59976
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=331.69 Aligned_cols=298 Identities=27% Similarity=0.446 Sum_probs=247.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++|+|+.|++++++|+.+.+++.+.+.. ...| +..|..++|+++|++++ +++++|++|+|+++++..++..+
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~~~y-~~~g~~~lr~~ia~~~~------~~~~~I~~~~G~~~~l~~~~~~~ 94 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG-VNRY-PDMGAVELRAALAEHLG------VPPEHVAVGCGSVALCQQLVQAT 94 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh-cCcC-CCCcHHHHHHHHHHHhC------cCHHHEEECCCHHHHHHHHHHHh
Confidence 5899999999998888999999887753 4567 56899999999999984 57889999999999999999999
Q ss_pred cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~ 255 (429)
+++||+|+++.|+|..|...++..|++++.++++++ +.+|++.+++.++++++++++++||||||.+++.+++.++++
T Consensus 95 ~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~ 172 (352)
T PRK03321 95 AGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTPAELARFLD 172 (352)
T ss_pred cCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCHHHHHHHHH
Confidence 999999999999999999999999999999998643 568999999999889999999999999999999887777777
Q ss_pred HHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCC
Q 014172 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (429)
Q Consensus 256 ~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~ 335 (429)
.| ++ +++||+||+|.++.+++....++..+. ..+++++++||||.||++|+|+||+++++++++.+.+.. ...+.
T Consensus 173 ~~-~~-~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~--~~~~~ 247 (352)
T PRK03321 173 AV-PA-DVLVVLDEAYVEYVRDDDVPDGLELVR-DHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVA--VPFSV 247 (352)
T ss_pred hC-CC-CeEEEEechHHHhccCcCCCcHHHHHh-hCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhc--CCCCC
Confidence 65 47 899999999999988654333333333 247899999999999999999999999999999998764 34568
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHH
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 415 (429)
+.++|.++.++|.. .+.+ .+..+.+.++|+.+.+.|++. |+.+. +.+|+|+|++++. ++.+
T Consensus 248 s~~~q~~a~~~l~~---~~~~-~~~~~~~~~~r~~~~~~L~~~-~~~~~-~~~g~~i~i~l~~-------------~~~~ 308 (352)
T PRK03321 248 NSLAQAAAIASLAA---EDEL-LERVDAVVAERDRVRAALRAA-GWTVP-PSQANFVWLPLGE-------------RTAD 308 (352)
T ss_pred CHHHHHHHHHHhcC---HHHH-HHHHHHHHHHHHHHHHHHHHC-CCccC-CCCCCEEEEeCCC-------------CHHH
Confidence 99999999888874 2444 444555566778899999887 77664 4467889999852 5778
Q ss_pred HHHHHHHhCCeec
Q 014172 416 LCRYLLDKAQVLL 428 (429)
Q Consensus 416 ~~~~Ll~~~gV~v 428 (429)
++++|. ++||.|
T Consensus 309 ~~~~l~-~~gI~v 320 (352)
T PRK03321 309 FAAAAA-EAGVVV 320 (352)
T ss_pred HHHHHH-HCCEEE
Confidence 999885 459986
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=325.95 Aligned_cols=280 Identities=19% Similarity=0.300 Sum_probs=225.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
.+|+|+.|++++... ....+| |.....+||++++++++ +++++|++|+|+++++..++. +
T Consensus 17 ~~i~l~~Nenp~~~~------------~~~~~Y-p~~~~~~lr~~ia~~~~------~~~~~I~it~Gs~~~l~~~~~-~ 76 (332)
T PRK06425 17 RIIDFSANINDFMDI------------GDISIY-PEISYTDIEDQIKIYTQ------GLKIKVLIGPGLTHFIYRLLS-Y 76 (332)
T ss_pred CEEEeccccCCCcCh------------hhcccC-cCcCHHHHHHHHHHHhC------CCcceEEECCCHHHHHHHHHH-H
Confidence 589999999988521 123567 66668999999999975 578899999999999999887 5
Q ss_pred cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~ 255 (429)
+++|+ |++++|+|+.|...++..|++++.+|++. +.+|.+.+++ .++++|++|+||||||.+++.+++++|++
T Consensus 77 ~~~~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~---~~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~ 149 (332)
T PRK06425 77 INVGN-IIIVEPNFNEYKGYAFTHGIRISALPFNL---INNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISE 149 (332)
T ss_pred hCCCc-EEEeCCChHHHHHHHHHcCCeEEEEeCCc---ccCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHH
Confidence 67764 66779999999999999999999999864 3357666653 37899999999999999999999999999
Q ss_pred HHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCC
Q 014172 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (429)
Q Consensus 256 ~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~ 335 (429)
+|++| +++||+||+|.+|.+++. .+...+....+++|+++||||.||++|+|+||+++++++++.+.+....+. .
T Consensus 150 ~a~~~-~~~iI~DE~Y~~~~~~~~--~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~~--~ 224 (332)
T PRK06425 150 ICRKK-GALLFIDEAFIDFVPNRA--EEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMKISRKITEPWS--V 224 (332)
T ss_pred HHHHc-CCEEEEecchhccccccc--hhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHHHHHHcCCCCc--c
Confidence 99999 999999999999887542 234444444579999999999999999999999999999999887654433 3
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHH
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 415 (429)
+.+++ .++..+. .+.++++.++.|+++|+.+.+.|+++ |+++..+.+|+|+|++++ ++.+
T Consensus 225 ~~~~~----~~l~~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~--------------~~~~ 284 (332)
T PRK06425 225 CDPAI----DFIRSID-LDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP--------------DAHD 284 (332)
T ss_pred CHHHH----HHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC--------------CHHH
Confidence 33332 2232211 24567788999999999999999998 888765556778999886 4679
Q ss_pred HHHHHHHhCCeec
Q 014172 416 LCRYLLDKAQVLL 428 (429)
Q Consensus 416 ~~~~Ll~~~gV~v 428 (429)
++++|+++ ||.|
T Consensus 285 ~~~~l~~~-gi~v 296 (332)
T PRK06425 285 FYSYLLKN-GILV 296 (332)
T ss_pred HHHHHHHC-CeEE
Confidence 99999875 8876
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=312.81 Aligned_cols=295 Identities=22% Similarity=0.299 Sum_probs=247.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEE
Q 014172 125 FTRYTPNAGTLELRSAICHKLK-EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203 (429)
Q Consensus 125 ~~~Y~~~~G~~~lr~~ia~~l~-~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 203 (429)
..+|++..|.++|...|.++.. ..+...+..++|++|+|.+.+++.+++.+|++||.|+++.++|++..+..+..|+++
T Consensus 93 alQYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ 172 (472)
T KOG0634|consen 93 ALQYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKI 172 (472)
T ss_pred hhccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceE
Confidence 3689999999999999999776 455566777899999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCHHHHHhhccc---------CCcEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc
Q 014172 204 VILPTRISENFLLDPKVLESKLTE---------KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273 (429)
Q Consensus 204 ~~v~~~~~~~~~~d~e~l~~~l~~---------~~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~ 273 (429)
+.|+++.++ +++|.|++.+.. ++++++ |++.+||||..++.++.++|.++|++| |++||+||+|..
T Consensus 173 ipv~md~~G---i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKy-DfLIVeDdpYy~ 248 (472)
T KOG0634|consen 173 IPVKMDQDG---IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKY-DFLIVEDDPYYF 248 (472)
T ss_pred EeccccCCC---CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHc-CEEEEecCccce
Confidence 999986543 899999998742 467777 688899999999999999999999999 999999999999
Q ss_pred cccCC---C-----C-----------CCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 274 IIYAP---A-----T-----------HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 274 ~~~~~---~-----~-----------~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
+.|+. . + .+++.+++. .+|||.+.||||.++ ||+|+||+.+++-+++.+.......+.+
T Consensus 249 Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDt-dGrVIr~dSFSKiia-PGlRlG~it~~~~~l~ril~~ae~~t~~ 326 (472)
T KOG0634|consen 249 LQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDT-DGRVIRNDSFSKIIA-PGLRLGWITGNSLFLKRILDLAEVATSG 326 (472)
T ss_pred eeccccCCCccccCccccHHHHHHhhcCCcccccc-cccEEeccchhhhhc-CcceeEEeecCHHHHHHHhhhcceeecC
Confidence 88762 1 1 123334443 699999999999998 9999999999999999999888888889
Q ss_pred CchHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHHhcc-CCC--ceeecCCceEEEEEecCCccCCcccCCCC
Q 014172 335 ASSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGE-LEG--VKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~-l~g--~~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 409 (429)
++.+.|.++.+.|+.... ..+|+.+++..|..||+.+..+|.+ +|. +++.+|.+|||+|++++.. . ......
T Consensus 327 pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~i~~~-~--~~~~~~ 403 (472)
T KOG0634|consen 327 PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVEIPYI-N--FDTKKS 403 (472)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEEeccc-c--cccccc
Confidence 999999999998876321 1278999999999999999999998 664 6788999999999999821 1 011111
Q ss_pred CCChHHHHHHHHHhCCeec
Q 014172 410 IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 410 ~~~~~~~~~~Ll~~~gV~v 428 (429)
+...+++...++.+.||.+
T Consensus 404 i~q~~e~i~~~~vk~gV~~ 422 (472)
T KOG0634|consen 404 INQIEEIIFIKAVKNGVKL 422 (472)
T ss_pred hHHHHHHHHHHHHHCCeEE
Confidence 1236677777777889975
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=321.31 Aligned_cols=290 Identities=17% Similarity=0.294 Sum_probs=237.1
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
++++++|+.|+|++++|+.+.+++.+.+.. ..+|++..|..+||+++++++. +++++|++|+|+++++..+++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~aia~~~~------~~~~~I~it~Ga~~al~~~~~ 93 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGD-LAAYPSTEDERRARAAVAARHG------RTPDEVLLLAGAAEGFALLAR 93 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhH-hhcCCCccchHHHHHHHHHHhC------cChhhEEECCCHHHHHHHHHh
Confidence 457999999999999999999999988754 4679877899999999999973 578999999999999998887
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+++| .++++.|+|..+...++..|++++.++++. ++.+|++.+ +++++++++++||||||.+++.+ +|
T Consensus 94 --l~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~--~~~~d~~~l----~~~~~~i~l~np~NPTG~~~~~~---~l 161 (349)
T PRK07908 94 --LRPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDP--PFRLDPAAV----PDDADLVVIGNPTNPTSVLHPAE---QL 161 (349)
T ss_pred --cCCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCc--ccCcChhHh----ccCCCEEEEcCCCCCCCCCcCHH---HH
Confidence 5674 567789999999999999999999999864 267888865 45789999999999999999965 45
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~ 333 (429)
.++|+ + +.++|+||+|.++.++ ...++... ..+++++++||||.|+++|+|+||+++++++++.+......+
T Consensus 162 ~~l~~-~-~~~iIvDe~y~~~~~~--~~~~l~~~--~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~-- 233 (349)
T PRK07908 162 LALRR-P-GRILVVDEAFADAVPG--EPESLAGD--DLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHW-- 233 (349)
T ss_pred HHHHh-c-CCEEEEECcchhhccC--Cccccccc--cCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCCC--
Confidence 56665 4 5678889999987543 23444443 246899999999999999999999999999999988765543
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
..+.+.+.++..++... ..+++++.++.++++|+.+.+.|+++ |+++..|.+|+|+|++++ +.
T Consensus 234 ~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~--------------~~ 296 (349)
T PRK07908 234 PVGTLQLEAIAACCAPR--AVAEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVP--------------DA 296 (349)
T ss_pred CccHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECC--------------cH
Confidence 35667777776666531 24788899999999999999999998 899888899999999987 24
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
.++.+.| +++||.|
T Consensus 297 ~~~~~~l-~~~gI~v 310 (349)
T PRK07908 297 ELLRKRL-RERGIAV 310 (349)
T ss_pred HHHHHHH-HhCCEEE
Confidence 4566555 5669876
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=325.31 Aligned_cols=299 Identities=28% Similarity=0.462 Sum_probs=246.0
Q ss_pred HHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEE-ecChH
Q 014172 87 ATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAK 165 (429)
Q Consensus 87 ~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~-t~G~~ 165 (429)
.+++...+.++|+|+.|++++++++.+.+++.+.+.. ...|++. ...+||+++++++. +++++|++ |+|++
T Consensus 26 ~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~-~~~~lr~~ia~~~~------~~~~~i~~~~~Ga~ 97 (361)
T PRK00950 26 AREYGIDPESIIKLGSNENPLGPSPKAVEAIEKELSK-IHRYPEP-DAPELREALSKYTG------VPVENIIVGGDGMD 97 (361)
T ss_pred HHHhCCCccceEEccCCCCCCCCCHHHHHHHHHHHHh-hcCCCCC-CHHHHHHHHHHHhC------CCHHHEEEeCCCHH
Confidence 3333334457999999999999989999998887654 4568554 44899999999973 57889999 78999
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 166 ~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
+++..++++++++||.|++++|+|..|...++..|++++.++.+ ++|.+|++.+++.++++++++++++||||||.++
T Consensus 98 ~~i~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~ 175 (361)
T PRK00950 98 EVIDTLMRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLI 175 (361)
T ss_pred HHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999853 4567999999999988899999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
+ .++|.++|+++ ++++|+||+|.++. +....+ +....+++++++||||.+|++|+|+||+++++++++.+.
T Consensus 176 ~---~~~l~~l~~~~-~~~li~De~y~~~~--~~~~~~---~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~ 246 (361)
T PRK00950 176 P---EEDIRKILEST-DALVFVDEAYVEFA--EYDYTP---LALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYM 246 (361)
T ss_pred C---HHHHHHHHHHC-CcEEEEECchhhhC--ccchHH---HHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHH
Confidence 9 55566677888 99999999999865 221212 222347899999999999999999999999999999888
Q ss_pred HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCccc
Q 014172 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 405 (429)
Q Consensus 326 ~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~ 405 (429)
+....+ +.+.+.|.++..++.. .+++++.++.++++|+.+.+.|. +.+ .|.+++|+|++++.
T Consensus 247 ~~~~~~--~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~l~----~~~-~~~~~~~i~~~~~~------- 308 (361)
T PRK00950 247 RAKTPF--SLTRLSQAAAIAALSD----KEYIEKSIEHGIKSREYLYNELP----FKV-YPSEANFVLVDVTP------- 308 (361)
T ss_pred HhcCCC--CCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHhhcC----eeE-CCCcceEEEEECCC-------
Confidence 776544 4678899999988874 67888889999999999988875 444 36677899999953
Q ss_pred CCCCCCChHHHHHHHHHhCCeec
Q 014172 406 GFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 406 ~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+++++|.++ ||.|
T Consensus 309 -----~~~~~~~~~l~~~-gv~v 325 (361)
T PRK00950 309 -----MTAKEFCEELLKR-GVIV 325 (361)
T ss_pred -----CCHHHHHHHHHHC-CEEE
Confidence 2788999999875 8876
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=324.37 Aligned_cols=297 Identities=28% Similarity=0.466 Sum_probs=252.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.++|+|+.|++++++|+.+.+++.++.. ....|++..+ .++|++++++++ +++++|++|+|+++++..++++
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~-~~~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~~~G~~~~l~~~~~~ 90 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAEAD-KLHRYPDPDP-AELKQALADYYG------VDPEQILLGNGSDEIIELLIRA 90 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHhHH-HhhcCCCCCH-HHHHHHHHHHhC------cChHHEEEcCCHHHHHHHHHHH
Confidence 4699999999999999999999998764 3467866555 899999999985 5678999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
++++||+|++++|+|+.|...++..|++++.++++.+ +.+|++.+++.+++++++|++++|+||||.+++.+++++++
T Consensus 91 l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~~~~~~~l~ 168 (346)
T TIGR01141 91 FLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDED--GQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLSRSDIEAVL 168 (346)
T ss_pred hcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCCC--CCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9999999999999999999899999999999998643 66899999999888999999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
+.|+ + ++++|+|++|..+.+.+. ..... ...+++++++||||.+|++|+|+||+++++++++.+...... .+
T Consensus 169 ~~~~-~-~~~ii~D~~y~~~~~~~~-~~~~~---~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~ 240 (346)
T TIGR01141 169 ERTP-E-DALVVVDEAYGEFSGEPS-TLPLL---AEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP--FN 240 (346)
T ss_pred HhCC-C-CcEEEEECchhhhcCCcc-HHHHH---hhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCC--CC
Confidence 9987 7 899999999997654321 11111 124578999999999998999999999999999988876543 45
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChH
Q 014172 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 414 (429)
.+.++|.++..+++. ..++++.++.++++++.+.+.|++++|+++. |.+++|+|++++. ++.
T Consensus 241 ~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~-------------~~~ 302 (346)
T TIGR01141 241 LSRLAQAAAIAALRD----DDFIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPR-------------DAD 302 (346)
T ss_pred CCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCC-------------CHH
Confidence 688999999888875 4578889999999999999999988888865 5567889999863 477
Q ss_pred HHHHHHHHhCCeec
Q 014172 415 SLCRYLLDKAQVLL 428 (429)
Q Consensus 415 ~~~~~Ll~~~gV~v 428 (429)
+++++|.++ ||.+
T Consensus 303 ~~~~~L~~~-gI~v 315 (346)
T TIGR01141 303 ALFEALLEK-GIIV 315 (346)
T ss_pred HHHHHHHHC-CeEE
Confidence 899988765 8876
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=327.68 Aligned_cols=289 Identities=23% Similarity=0.377 Sum_probs=236.3
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.+.|+|+.|++++++|+.+ .. ....+|+ ..+..+||+++|+++ | +++++|++|+|++++|.+++++
T Consensus 31 ~~~~~l~~ne~~~~~~~~~------~~-~~~~~Yp-~~~~~~Lr~aia~~~----~--~~~~~I~it~Gs~~~i~~~~~~ 96 (354)
T PRK04635 31 RGDIWINANESPFNNEYKL------DL-ARLNRYP-ECQPPELINAYSAYA----G--VAPEQILTSRGADEAIELLIRA 96 (354)
T ss_pred CCcEEeeCCCCCCCCChhh------hh-HHhccCC-CCCHHHHHHHHHHHh----C--cCHHHEEEeCCHHHHHHHHHHH
Confidence 4579999999999988643 11 1246785 456899999999986 3 6889999999999999999999
Q ss_pred hcCCC-CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 175 VCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 175 l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
++++| |+|++++|+|..|...++..|++++.+|++. ++.+|++.++. + +++|+|++++||||||.+++.+++++|
T Consensus 97 ~~~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l 172 (354)
T PRK04635 97 FCEPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA--DYQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQL 172 (354)
T ss_pred hcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC--CCCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHH
Confidence 99999 9999999999999999999999999999863 46789998874 4 689999999999999999998888888
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~ 333 (429)
++.|+ +++||+||+|.+|... .+...+....+++++++||||.||++|+|+||+++++++++.+...... .
T Consensus 173 ~~~~~---~~~vivDeay~~~~~~----~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~--~ 243 (354)
T PRK04635 173 IEMTP---DAIVVVDEAYIEFCPE----YSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIEILMRVIAP--Y 243 (354)
T ss_pred HHhCC---CcEEEEeCchHhhccC----cchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHHHHHhhcCC--C
Confidence 88764 5899999999987532 1333333345789999999999999999999999999999988765443 4
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
+.+.+.|.++.++|.+. ..+++++.++.++++|+.+.+.|++++++++.+++| .|+|++++ +.
T Consensus 244 ~~~~~~~~~a~~~l~~~--~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~g-~f~~~~~~--------------~~ 306 (354)
T PRK04635 244 PVPLPVSEIATQALSEA--GLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGNG-NYVLAKFD--------------DV 306 (354)
T ss_pred CCCHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCCC-cEEEEECC--------------CH
Confidence 57788888888888752 246677888899999999999999986688776664 67899886 35
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
.++.+.|. ++||.|
T Consensus 307 ~~~~~~l~-~~gv~v 320 (354)
T PRK04635 307 DAVFKALW-DAGIVA 320 (354)
T ss_pred HHHHHHHH-HCCEEE
Confidence 67777664 569876
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=322.21 Aligned_cols=276 Identities=18% Similarity=0.216 Sum_probs=224.3
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++|+|+.|++++++|+..... .. ..+| |... .+||++++++++ +. ++++|++|+|++++|.++. .+
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~--~~----~~~Y-p~~~-~~L~~~ia~~~~----~~-~~~~I~i~~Gs~e~i~~l~-~~ 90 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPA--DA----WRRL-PEDD-DGLAACAARYYG----AP-DAAHVLPVAGSQAAIRALP-AL 90 (339)
T ss_pred hhceeccCCCCCCCCCCCCCH--HH----HHhC-CCch-HHHHHHHHHHhC----CC-CcccEEECcCHHHHHHHHH-Hh
Confidence 479999999998876222211 11 2357 4444 899999999864 31 3589999999999999665 45
Q ss_pred cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~ 255 (429)
+++|| |+++.|+|+.|...++..|++++.++.+. +.+ .+.++++++|+||||||.+++.+++++|++
T Consensus 91 ~~~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~----~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~ 157 (339)
T PRK06959 91 LPRGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTL----PAALTHLIVVNPNNPTAERLPAARLLRWHA 157 (339)
T ss_pred cCCCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhc----cccCCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 78887 88999999999999999999999988642 222 234678999999999999999999999999
Q ss_pred HHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCC
Q 014172 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (429)
Q Consensus 256 ~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~ 335 (429)
.|+++ +.++|+||+|.++.+. .++..+.. .+++|+++||||.||++|+|+||+++++++++.+.+....+ +.
T Consensus 158 ~~~~~-~~~vI~DEay~~~~~~----~s~~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~~l~~~~~~~--~v 229 (339)
T PRK06959 158 QLAAR-GGTLIVDEAFADTLPA----ASLAAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPALLAALRDALGAW--TV 229 (339)
T ss_pred HHHHc-CCEEEEECCCccCCCc----ccchhccC-CCCEEEEecChhhcCCcchheEEEecCHHHHHHHHHhcCCC--CC
Confidence 99998 8899999999997543 34444432 47799999999999999999999999999999999886654 46
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHH
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 415 (429)
+.++|.++.++|++ .++.++.++.++++|+.+.+.|+++ |+++. .+++|+|++++ +..+
T Consensus 230 s~~~q~a~~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~--~~~~f~~~~~~--------------~~~~ 288 (339)
T PRK06959 230 SGPARHAVRAAFAD----AAWQAAMRERLAADGARLAALLRAH-GFAVH--ATPLFSWTDDP--------------RAAA 288 (339)
T ss_pred cHHHHHHHHHHhCc----HHHHHHHHHHHHHHHHHHHHHHHHC-CCCcc--CcceEEEEeCC--------------CHHH
Confidence 88999999999985 6788899999999999999999998 77664 36799999875 4678
Q ss_pred HHHHHHHhCCeec
Q 014172 416 LCRYLLDKAQVLL 428 (429)
Q Consensus 416 ~~~~Ll~~~gV~v 428 (429)
+.++|.++ ||.|
T Consensus 289 l~~~l~~~-GI~v 300 (339)
T PRK06959 289 LHAALARR-GIWT 300 (339)
T ss_pred HHHHHHhC-CeEE
Confidence 99988776 9976
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=317.57 Aligned_cols=282 Identities=24% Similarity=0.415 Sum_probs=232.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
.+.|+|+.|+|++++|+.+.+++.+++.. ...+| |..|.++||++++++++ +++++|++|+|+++++..++.
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLVK 90 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHH
Confidence 46899999999999899999999988754 45678 46799999999999984 688999999999999998877
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
.+ +||+|+++.|+|..|...++..|++++.++++. ++.+|++.+++.+ ++++++++++||||||.+++.+++.+
T Consensus 91 ~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~~~~l~~- 164 (337)
T PRK03967 91 LF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-KNASAVFICSPNNPTGNLQPEEEILK- 164 (337)
T ss_pred Hh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCCHHHHHH-
Confidence 66 799999999999999999999999999999863 4679999998865 57899999999999999999665554
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~ 333 (429)
++ ++ +++||+||+|.+|.. ... ..+....+++|+++||||.||++|+|+||+++++++++.+.+....+
T Consensus 165 --i~-~~-~~~ii~De~y~~~~~--~~~---~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~~-- 233 (337)
T PRK03967 165 --VL-ET-GKPVVLDEAYAEFSG--KSL---IGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPPF-- 233 (337)
T ss_pred --HH-hc-CCEEEEECchhhhcc--cch---HHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCCC--
Confidence 45 47 899999999998752 111 12222247899999999999999999999999999999998876543
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
+.+.++|.++..+|++ .+++.+.++.+.++|+.+.+.|.+. ..|.+++|+|++++
T Consensus 234 ~~~~~~q~~~~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~---------------- 288 (337)
T PRK03967 234 SLNILTMKIVRLALDH----YDLIEERIDYIIKERERVRRELGEY-----AYPSDANFLLLKLD---------------- 288 (337)
T ss_pred CCCHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH----------------
Confidence 5789999999999975 4567766677778888888888764 24788999998762
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
+++.|+++ ||.|
T Consensus 289 --~~~~l~~~-gi~v 300 (337)
T PRK03967 289 --AYDYLLEN-GIVV 300 (337)
T ss_pred --HHHHHHHC-CEEE
Confidence 56666654 8876
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=314.91 Aligned_cols=272 Identities=19% Similarity=0.256 Sum_probs=221.2
Q ss_pred CeEEcCCCCCCCCCh-HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTP-VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p-~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
++|+|+.|++++++| +.+.+ ..+ ..| |. +..+||++|++++ .+++|++|+|++++|.+++
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~---~~~----~~y-p~-~~~~Lr~~ia~~~--------~~~~I~it~Gs~~al~~~~-- 81 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPA---DAW----ARL-PE-TDDGLEAAARAYY--------GAPQLLPVAGSQAAIQALP-- 81 (330)
T ss_pred HheeecCCcCCCCCCCcccCH---HHH----HhC-CC-ChHHHHHHHHHHh--------CCCCEEECcCHHHHHHHHH--
Confidence 479999999887665 33322 222 246 33 3489999999997 3479999999999999775
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
.+.+||+|++++|+|+.|...++..|++++.+|++ .+++.+ ++++++++++||||||.+++.+++++|+
T Consensus 82 ~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~-~~~~~v~l~nP~NPTG~~~s~~~l~~l~ 150 (330)
T PRK05664 82 RLRAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAAL-DSLDVLVVVNPNNPTGRRFDPARLLAWH 150 (330)
T ss_pred HccCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhh-cCCCEEEEeCCcCCCCCccCHHHHHHHH
Confidence 35799999999999999999999999999999852 244444 3678899999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
++|+++ +++||+||+|.++. ...++..+.. .+++++++||||.||++|+|+||+++++++++.+.+....+ +
T Consensus 151 ~~~~~~-~~~iI~DE~y~~~~----~~~s~~~~~~-~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~~~~~~~~~~--~ 222 (330)
T PRK05664 151 ARLAAR-GGWLVVDEAFMDNT----PQHSLAACAH-RPGLIVLRSFGKFFGLAGARLGFVLAEPALLRALAELLGPW--T 222 (330)
T ss_pred HHHHhc-CCEEEEECCcccCC----Cccccccccc-CCCEEEEeeccccccCCCcceEEEEeCHHHHHHHHHhcCCC--C
Confidence 999999 99999999998753 1235555543 57899999999999999999999999999999998775543 4
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCce--EEEEEecCCccCCcccCCCCCCC
Q 014172 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA--FYLFIDFSTYYGSEAEGFGKIEN 412 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~--~~~~~~l~~~~~~~~~~~~~~~~ 412 (429)
.+.+.|.++..+|.+ ..+.++.++.++++|+.+.+.|+++ |++ |.++ +|+|++++ +
T Consensus 223 ~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~r~~l~~~L~~~-~~~---~~~~~~~f~~~~~~--------------~ 280 (330)
T PRK05664 223 VSGPTRWLAQAALAD----TPWQRRQRERLLAASQRLAALLRRH-GLT---PAGGCALFQWVRTE--------------D 280 (330)
T ss_pred CCHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHHHHHC-CCc---ccCCcceEEEEecC--------------C
Confidence 678999999999985 4667888999999999999999987 664 4444 78888764 5
Q ss_pred hHHHHHHHHHhCCeec
Q 014172 413 SESLCRYLLDKAQVLL 428 (429)
Q Consensus 413 ~~~~~~~Ll~~~gV~v 428 (429)
+.++++.|.++ ||.|
T Consensus 281 ~~~~~~~l~~~-gi~v 295 (330)
T PRK05664 281 AAALHEFLARR-GILT 295 (330)
T ss_pred HHHHHHHHHHC-CeEE
Confidence 67888887655 9976
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=312.73 Aligned_cols=294 Identities=22% Similarity=0.337 Sum_probs=242.0
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEec
Q 014172 83 ITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 162 (429)
Q Consensus 83 ~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~ 162 (429)
+...++++..++++.|+|+.|+|++++| ..+... +...+|++..+ +++|++++++++ +++++|++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~t~ 71 (330)
T TIGR01140 5 LRRAAARYGIPPEDWLDFSTGINPLGPP--VPPIPA----SAWARYPDPEY-DELRAAAAAYYG------LPAASVLPVN 71 (330)
T ss_pred HHHHHHHcCCChhheeEccccCCCCCCC--hhhcch----HHHhhCCCccH-HHHHHHHHHHhC------CChhhEEECC
Confidence 3445566666677899999999888876 222211 22467865555 999999999873 5689999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 163 G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
|+++++..+..+ +.+| .|++++|+|..|...++..|.+++.++ |++.+++.+ ++++++++++||||||
T Consensus 72 G~~~~i~~~~~~-l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~-~~~~~v~i~~p~NPtG 139 (330)
T TIGR01140 72 GAQEAIYLLPRL-LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAAL-EELDVLVLCNPNNPTG 139 (330)
T ss_pred CHHHHHHHHHHH-hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhc-ccCCEEEEeCCCCCCC
Confidence 999999987665 5777 699999999999999999999998886 788898888 4688999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~ 322 (429)
.+++.+++++|+++|++| |++||+||+|.++.+.. ++..+....+++++++||||.+|++|+|+||+++++++++
T Consensus 140 ~~~~~~~~~~l~~~a~~~-~~~ii~De~y~~~~~~~----~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~ 214 (330)
T TIGR01140 140 RLIPPETLLALAARLRAR-GGWLVVDEAFIDFTPDA----SLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLA 214 (330)
T ss_pred CCCCHHHHHHHHHHhHhc-CCEEEEECcccccCCcc----chhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHH
Confidence 999999999999999999 99999999999876531 2333222357899999999999999999999999999999
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCC
Q 014172 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 402 (429)
Q Consensus 323 ~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~ 402 (429)
.+...... .+.+.++|.++..++++ .+|.++.++.++++++.+.+.|++++++++. |.+++|+|++++
T Consensus 215 ~l~~~~~~--~~~s~~~q~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~----- 282 (330)
T TIGR01140 215 RLREALGP--WTVNGPARAAGRAALAD----TAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTP----- 282 (330)
T ss_pred HHHhcCCC--CCchHHHHHHHHHHHhc----hHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcC-----
Confidence 98876543 34688999999999985 5677888999999999999999998556664 567899999886
Q ss_pred cccCCCCCCChHHHHHHHHHhCCeec
Q 014172 403 EAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 403 ~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..+++++|+++ ||.+
T Consensus 283 ---------~~~~l~~~l~~~-gi~v 298 (330)
T TIGR01140 283 ---------DAAALHEALARR-GILI 298 (330)
T ss_pred ---------CHHHHHHHHHHC-CEEE
Confidence 467899999875 8875
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=318.99 Aligned_cols=333 Identities=17% Similarity=0.215 Sum_probs=263.1
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC--CCCChH---HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP--DFDTPV---LIAEAGINAIREGFTRYTPNAGTLELRSAICHK 144 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~--~~~~p~---~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~ 144 (429)
-|++.++++.+..+.++++.++++|.++|+|++|+| |+.+|. .+.+++.+++..+..+|++..|..+||++++++
T Consensus 11 ~r~~~v~~~~~~~~~~~~~~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~ 90 (460)
T PRK13238 11 FRIKMVEPIRLTTREERERALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDI 90 (460)
T ss_pred eeeceeccccccCHHHHHHHHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 456778888888899999999999999999999998 788865 688999998887788999999999999999999
Q ss_pred HHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC------CCCC--C
Q 014172 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS------ENFL--L 216 (429)
Q Consensus 145 l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~------~~~~--~ 216 (429)
++ .++|++|+|+++++.++++++++||| |++++|.|..|...++..|++++.+++++. ++|. +
T Consensus 91 ~~--------~~~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~i 161 (460)
T PRK13238 91 FG--------YPYTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNF 161 (460)
T ss_pred hC--------CCcEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCCc
Confidence 74 35799999999999999999999999 999999999999999999999999998642 3454 9
Q ss_pred CHHHHHhhccc----CCcEEEEcCCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCc--ccccCC-----CCCCcc
Q 014172 217 DPKVLESKLTE----KSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYE--HIIYAP-----ATHTSF 284 (429)
Q Consensus 217 d~e~l~~~l~~----~~~~i~l~~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~--~~~~~~-----~~~~~~ 284 (429)
|++.|++.+++ ++++|++++|+|||| .+++.+++++|.++|++| |++||+|+++. ...|.. ....++
T Consensus 162 d~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~-gi~li~Daa~~~e~a~f~~~~e~g~~~~si 240 (460)
T PRK13238 162 DLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKY-GIPVVIDAARFAENAYFIKQREPGYKDKSI 240 (460)
T ss_pred CHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECcchhhhhhhhhhccccccCCCH
Confidence 99999999974 699999999999998 999999999999999999 99999999763 343422 122232
Q ss_pred ccCCCCCCceEEEeccChhcccccceee------EEEcC-HHHHHHHHHHh----hcccCCC-chHHHHHHHHHHhcCCC
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGWRLG------YIAGP-KHFVAACNKIQ----SQFTSGA-SSISQKAGVAALGLGYA 352 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G------~v~~~-~~~~~~l~~~~----~~~~~~~-~~~~q~aa~~~l~~~~~ 352 (429)
.++ +..++|++|.+.++|||+| |++++ +++++.++... ...+++. +...|.|+...|....
T Consensus 241 ~~i------~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~- 313 (460)
T PRK13238 241 KEI------AREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM- 313 (460)
T ss_pred HHH------hhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh-
Confidence 222 2446788888888888863 55666 57888877663 2223343 4445777776665311
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC-CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 353 ~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++++..+ .+++++|.+.|.+. |+.+..|.||||+++++..... ....++ .+.+|+.+|+++.||.+
T Consensus 314 ~~~~~~~~----~~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~----~~~~~a~~L~~e~GV~~ 381 (460)
T PRK13238 314 DEDYLAYR----IGQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIPAEQF----PAQALACELYLEAGIRG 381 (460)
T ss_pred ChHHHHHH----HHHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCCCCCCCC----chHHHHHHHHHHcCeee
Confidence 13344333 33689999999987 9999999999999999976421 011111 46899999999999985
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=297.90 Aligned_cols=295 Identities=22% Similarity=0.381 Sum_probs=256.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcC--CCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH-cCCE
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADAT 202 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~ 202 (429)
..|.+-.|.+.+|+++|+++.+..| ++++|+++++++|+|.+.+.++..|++|||.-|+|.|.|+++-.-++. .|++
T Consensus 115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgve 194 (471)
T KOG0256|consen 115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVE 194 (471)
T ss_pred hhcccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCce
Confidence 4577778999999999999998766 458899999999999999999999999999999999999998766654 6999
Q ss_pred EEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCccccc
Q 014172 203 PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276 (429)
Q Consensus 203 ~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~ 276 (429)
++.|.+..+++|.++++.+|+++.. +.|.|+|+||+||.|+++++|++..++++|.++ |+.||+||+|..-+|
T Consensus 195 ivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~k-niHvI~DEIya~sVF 273 (471)
T KOG0256|consen 195 IVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRK-NIHVISDEIYAGSVF 273 (471)
T ss_pred EEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhc-ceEEEeehhhccccc
Confidence 9999999999999999999998853 789999999999999999999999999999999 999999999999999
Q ss_pred CCCCCCccccCCC----CCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCC
Q 014172 277 APATHTSFASLPG----MWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY 351 (429)
Q Consensus 277 ~~~~~~~~~~~~~----~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~ 351 (429)
+.....++.++.. ..+++-++.|+||-+|+||+|+|.+.. +++++.+..++.+.. ..|+..|..+...|.+.+
T Consensus 274 ~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmssf~--~vSs~tQ~~la~LLSD~~ 351 (471)
T KOG0256|consen 274 DKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSSFG--LVSSQTQYLLASLLSDEE 351 (471)
T ss_pred CccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhhcc--CCcHHHHHHHHHHhchHH
Confidence 9877777766422 368899999999999999999999986 567777777765543 478999999999999855
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 352 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 352 ~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
..+.++++..++++.+.+++.+.|+++ |+.+.+..+|+|+|+++..+.... ..+.+.++.++++++-+|.+|
T Consensus 352 f~~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s~AGlF~wvDlr~lL~s~-----tfe~El~Lw~~i~~~vklnlS 423 (471)
T KOG0256|consen 352 FTREYLRENNKRLRIRHRYIVEGLKAL-GIPCLKSNAGLFCWVDLRKLLTSL-----TFEGELELWERILDNVKLNLS 423 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhc-CCceeecCCeeEEEEEhHHhcCcC-----ChHHHHHHHHHHHHhhccccC
Confidence 456778889999999999999999999 999999999999999998764321 113577899999988676654
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=299.10 Aligned_cols=269 Identities=20% Similarity=0.353 Sum_probs=211.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++|+|+.|+++++ |+.+.+++.+++.. ..+|+. ...||+++++++. ++|++|+|+++++..++..+
T Consensus 9 ~~i~l~~~~np~~-p~~~~~a~~~~~~~-~~~yp~---~~~l~~~ia~~~~---------~~I~vt~G~~~al~~~~~~~ 74 (311)
T PRK08354 9 GLIDFSASVNPYP-PEWLDEMFERAKEI-SGRYTY---YEWLEEEFSKLFG---------EPIVITAGITEALYLIGILA 74 (311)
T ss_pred ceeEecCCCCCCC-CHHHHHHHHHHHHH-hhcCCC---hHHHHHHHHHHHC---------CCEEECCCHHHHHHHHHHhh
Confidence 5899999998886 57888888877653 456742 4789999998863 47999999999999877544
Q ss_pred cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~ 255 (429)
.+||+|++++|+|+.|...++..|++++.++ +|++.+++.+. +++++++++||||||.+++.+++++|++
T Consensus 75 -~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~~~l~~l~~ 144 (311)
T PRK08354 75 -LRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNFKELKPLLD 144 (311)
T ss_pred -CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCHHHHHHHHH
Confidence 4899999999999999999999999997653 57889988876 5788999999999999999999999999
Q ss_pred HHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCC
Q 014172 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335 (429)
Q Consensus 256 ~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~ 335 (429)
+|++| |++||+||+|.+|.+++.. .. .+++++++||||.|+++|+|+||+++ +++.+.+....+. .
T Consensus 145 ~a~~~-~~~li~De~y~~f~~~~~~------~~--~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~~~--~ 210 (311)
T PRK08354 145 AVEDR-NALLILDEAFIDFVKKPES------PE--GENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMPWS--I 210 (311)
T ss_pred Hhhhc-CcEEEEeCcchhccccccc------cC--CCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCCcc--C
Confidence 99999 9999999999999886421 11 57899999999999999999999998 5566666554433 4
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHH
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 415 (429)
+...+.++..+++. ..+++.+.++.++++++.+.+.+ ..+|+++||+ ++++ ++.+
T Consensus 211 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l-------~~~~~~~~~~-~~~~--------------~~~~ 265 (311)
T PRK08354 211 GSTGYAFLEFLIED---DFEHLRKTMPLIWREKERFEKAL-------YVKSDANFFI-KDVG--------------DAEK 265 (311)
T ss_pred CHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhc-------CCCCCCcEEE-EECC--------------CHHH
Confidence 55667666666653 23556666666666666554443 1357777765 5653 4678
Q ss_pred HHHHHHHhCCeec
Q 014172 416 LCRYLLDKAQVLL 428 (429)
Q Consensus 416 ~~~~Ll~~~gV~v 428 (429)
+++.|.++ ||.|
T Consensus 266 ~~~~l~~~-gv~v 277 (311)
T PRK08354 266 FVEFLKRN-GILV 277 (311)
T ss_pred HHHHHHHC-CeEE
Confidence 99887655 8876
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=279.45 Aligned_cols=314 Identities=36% Similarity=0.631 Sum_probs=261.0
Q ss_pred EEcCCCCCCCCChHHHHHHHHH-HHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 98 IRLAAGEPDFDTPVLIAEAGIN-AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~-~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
|+|+.|.+++.+++.++.++.+ ........|.+..|..++++.+++++...+|....++++++++|+++++..++.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~ 80 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL 80 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC
Confidence 5789999998887777776664 222345678888999999999999999888766667899999999999999999999
Q ss_pred CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHH
Q 014172 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~ 256 (429)
++||+|+++.|+|.++...++..|.+++.++.+..+....+.+.++....+++++|++++|+||||.+++.+++++|.++
T Consensus 81 ~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~ 160 (350)
T cd00609 81 NPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAEL 160 (350)
T ss_pred CCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHH
Confidence 99999999999999999999999999999998755543333367777777899999999999999999999999999999
Q ss_pred HHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH-HHHHHHHHHhhcccCCC
Q 014172 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQFTSGA 335 (429)
Q Consensus 257 a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~~~~l~~~~~~~~~~~ 335 (429)
|+++ |+++|+|++|+.+.+.+...... ......+.+++++|++|.++++|.|+||+++++ ++.+.+.........++
T Consensus 161 ~~~~-~~~~ivD~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~~~~~~ 238 (350)
T cd00609 161 AKKH-GILIISDEAYAELVYDGEPPPAL-ALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPYTTSGP 238 (350)
T ss_pred HHhC-CeEEEEecchhhceeCCcccccc-cCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHhcccCC
Confidence 9999 99999999999887765432211 122335778999999999998999999999999 89999888777766788
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHH
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 415 (429)
+...+.++..+++. ..++.++.++.++++++++.+.|++.+...+..+.+++|+|++++.. ...+
T Consensus 239 ~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~------------~~~~ 303 (350)
T cd00609 239 STLSQAAAAAALDD---GEEHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG------------DDEE 303 (350)
T ss_pred ChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC------------ChHH
Confidence 99999999999986 33778899999999999999999997444435678899999998752 3456
Q ss_pred HHHHHHHhCCeec
Q 014172 416 LCRYLLDKAQVLL 428 (429)
Q Consensus 416 ~~~~Ll~~~gV~v 428 (429)
++.++++++||.+
T Consensus 304 ~~~~~l~~~gi~i 316 (350)
T cd00609 304 FLERLLLEAGVVV 316 (350)
T ss_pred HHHHHHHhCCEEE
Confidence 6677777778875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=292.59 Aligned_cols=317 Identities=19% Similarity=0.181 Sum_probs=246.6
Q ss_pred HHHHHHhcCCCeEEcCCCCC--CCCCh---HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEE
Q 014172 86 QATALAQAGVSVIRLAAGEP--DFDTP---VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV 160 (429)
Q Consensus 86 ~~~~~~~~g~~~i~L~~g~~--~~~~p---~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~ 160 (429)
+.+.+++.|.+++.|..+++ |+.++ ..+.+++..++..+...|+++.|..+|+++++++++ .+++++
T Consensus 2 r~~~l~~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g--------~~~vv~ 73 (431)
T cd00617 2 RERALKEAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFG--------FKHIIP 73 (431)
T ss_pred hHHHHHHcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHC--------CCeEEE
Confidence 46678889999999999999 77776 478888888887777789999999999999999974 358999
Q ss_pred ecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC--------CCCCHHHHHhhcccC----
Q 014172 161 SNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLTEK---- 228 (429)
Q Consensus 161 t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~--------~~~d~e~l~~~l~~~---- 228 (429)
|+|+++++.+++.++++|||+| +++|.|..|...+...|++++.++++++.+ +.+|++.|+++++++
T Consensus 74 t~~Gt~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~ 152 (431)
T cd00617 74 THQGRGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAEN 152 (431)
T ss_pred cCCHHHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCC
Confidence 9999999999999999999988 699999999999999999999999975432 459999999999865
Q ss_pred CcEEEEcCCCCCc-cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc--ccc-----CCCCCCccccCCCCCCceEEEecc
Q 014172 229 SRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--IIY-----APATHTSFASLPGMWERTLTVNGF 300 (429)
Q Consensus 229 ~~~i~l~~p~NPt-G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~--~~~-----~~~~~~~~~~~~~~~~~~i~~~S~ 300 (429)
+++|++++|+||+ |.+++.+++++|.++|++| |++||+|++... ..| ++....++. +.++.++|+
T Consensus 153 ~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~-gi~li~DaAr~~~na~~i~~r~~g~~~~si~------ei~~e~~s~ 225 (431)
T cd00617 153 IPYIVLTITNNTAGGQPVSMANLREVRELAHKY-GIPVVLDAARFAENAYFIKEREEGYRDKSIA------EIAREMFSY 225 (431)
T ss_pred ccEEEEECCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhHhhhhhhhcccccccCCCHH------HHHHHhhcc
Confidence 7889999999998 9999999999999999999 999999999432 122 222233333 234568899
Q ss_pred Chhcccccce------eeEEEcCH-HHHHHHHHHhh----cccCC-CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 014172 301 SKAFAMTGWR------LGYIAGPK-HFVAACNKIQS----QFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (429)
Q Consensus 301 SK~~~~~G~R------~G~v~~~~-~~~~~l~~~~~----~~~~~-~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r 368 (429)
+|.+.|+||| .||+++++ ++++.++.... ..+++ .+.....++..+|... .+ .+.+.+.++ +|
T Consensus 226 sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~---~~-~~~l~~~~~-~r 300 (431)
T cd00617 226 ADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREA---VE-EDYLRHRVE-QV 300 (431)
T ss_pred CCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhc---cc-HHHHHHHHH-HH
Confidence 9999999998 67999986 58888775321 11122 2333333333355431 11 223333444 66
Q ss_pred HHHHHHhccCCCceeecCCceEEEEEecCCccC-CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 369 ~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.+.|.+. |+.+..|.|++|+|++++...+ ...++ .++.+|+.+|+++.||.+
T Consensus 301 ~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~----~~~~~la~~L~~e~gV~~ 356 (431)
T cd00617 301 RYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQ----FPAQALAAELYLEAGVRA 356 (431)
T ss_pred HHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCccc----CcHHHHHHHHHHHcCeeE
Confidence 9999999998 9999999999999999986421 01111 168999999999999974
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=252.57 Aligned_cols=359 Identities=23% Similarity=0.362 Sum_probs=271.1
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCC--------CeEEcCCCCCC----------------------CC---ChHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGV--------SVIRLAAGEPD----------------------FD---TPVLIA 114 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~i~L~~g~~~----------------------~~---~p~~v~ 114 (429)
+++.+.+.+......|.-++.++++..+ ++|+-++|+|- +. -|..++
T Consensus 13 ~N~~V~k~eYAVRG~i~~rA~El~~eL~~~~~~PF~eiI~aNIGnpqamgQ~PiTF~RQvlal~~~p~lLd~~~fp~Dai 92 (475)
T KOG0258|consen 13 LNPNVKKAEYAVRGPIVIRADELEKELKKGVKKPFDEIIRANIGNPQAMGQKPITFLRQVLALCQYPELLDSPEFPTDAI 92 (475)
T ss_pred cChhhhhhhhhhccchhhhHHHHHHHHHhcccCChHHHHhhcCCCHHHhCCCChhHHHHHHHHhcChhhcCCCCCCHHHH
Confidence 5555665554433344444544443211 37888888763 11 144555
Q ss_pred HHHHHHHHc---CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC-CCCEEEEcCCCCC
Q 014172 115 EAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWV 190 (429)
Q Consensus 115 ~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-~gd~Vlv~~p~y~ 190 (429)
+...+.+.. ....|+.++|.+-+|+.+|+++.++-|.+.+|++|++|.|++.++..++..++. +.+.|++|-|.|+
T Consensus 93 ~RA~~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYP 172 (475)
T KOG0258|consen 93 KRAKRILNDCGGSLGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYP 172 (475)
T ss_pred HHHHHHHHhcCCcccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCc
Confidence 555555543 245799999999999999999999999889999999999999999999998874 6799999999999
Q ss_pred ChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-----CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEE
Q 014172 191 SYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265 (429)
Q Consensus 191 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-----~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~v 265 (429)
-|...+...|+..+.+-++++++|.+|.++|++.+++ +++++++.||.||||.+++++.+++|..+|.++ ++++
T Consensus 173 LYsAti~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~-~l~l 251 (475)
T KOG0258|consen 173 LYSATISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEE-GLVL 251 (475)
T ss_pred hhHHHHHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHc-CeEE
Confidence 9999999999999999999999999999999998864 689999999999999999999999999999999 9999
Q ss_pred EEccCCcccccCCC-CCCcccc----CCCCCC-c--eEEEeccChhc-ccccceeeEEEc---CHHHHHHHHHHhhcccC
Q 014172 266 LSDEIYEHIIYAPA-THTSFAS----LPGMWE-R--TLTVNGFSKAF-AMTGWRLGYIAG---PKHFVAACNKIQSQFTS 333 (429)
Q Consensus 266 i~Deay~~~~~~~~-~~~~~~~----~~~~~~-~--~i~~~S~SK~~-~~~G~R~G~v~~---~~~~~~~l~~~~~~~~~ 333 (429)
+.||+|.+-+|.+. ...++.. +...+. + .+.++|.||.+ |=+|.|-||.-. +++..+.+.+... ...
T Consensus 252 laDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~s-i~l 330 (475)
T KOG0258|consen 252 LADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLAS-IKL 330 (475)
T ss_pred echHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHh-hhh
Confidence 99999999998753 4445433 222222 2 46788889998 458999999753 5677777766544 345
Q ss_pred CCchHHHHHHHHHHhcCCCC----h---HHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC-Cccc
Q 014172 334 GASSISQKAGVAALGLGYAG----G---EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAE 405 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~----~---~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~-~~~~ 405 (429)
|++..+|...-....-+.-. + ...+.+...+++|...+.+.++.++|+.+.+++|+||+|.++.=... ..++
T Consensus 331 c~~V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~~gi~cn~~qGAMY~fP~i~lP~kaie~A 410 (475)
T KOG0258|consen 331 CPQVSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSLEGISCNPVQGAMYLFPQISLPPKAIEAA 410 (475)
T ss_pred cCCccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhcCceeeccCccceeecccccCCHHHHHHH
Confidence 67777777665555421111 1 22445777888999999999999999999999999999966632111 1111
Q ss_pred CCCCCCChHHHHHHHHHhCCeec
Q 014172 406 GFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 406 ~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.-.++..+.-.|.+||+..||++
T Consensus 411 ~~~~~~PD~FYc~~LLe~tGIcv 433 (475)
T KOG0258|consen 411 KALGIAPDEFYCLKLLEATGICV 433 (475)
T ss_pred HHhCCCCcHHHHHHHHHhcCeEE
Confidence 12233567788999999999986
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-31 Score=264.02 Aligned_cols=301 Identities=18% Similarity=0.181 Sum_probs=226.5
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+++|+|+.|+ +++++++.+.+++.+.+.+....|. ...|..++++++++++.+.+|. +++|++|+| ++++
T Consensus 40 ~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~---~~~i~~tsG-~~a~ 115 (397)
T PRK06939 40 DGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGT---EDAILYSSC-FDAN 115 (397)
T ss_pred CCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCC---CcEEEEcCh-HHHH
Confidence 578899999998 7888899999999998865323332 2468899999999999998883 367888888 6788
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG 242 (429)
..++++++++||+|++++|+|+++...++..|++++.++. .|++.+++.+++ ++++|++.+.+||+|
T Consensus 116 ~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G 188 (397)
T PRK06939 116 GGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSMDG 188 (397)
T ss_pred HHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCC
Confidence 8889999999999999999999999999999999888764 378888877753 677777777899999
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~ 322 (429)
...+ +++|.++|++| +++||+||+|....++...........-..+.+++++||||.++ |+|+||+++++++++
T Consensus 189 ~~~~---~~~l~~la~~~-~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~--g~r~G~v~~~~~~~~ 262 (397)
T PRK06939 189 DIAP---LPEICDLADKY-DALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALG--GASGGYTAGRKEVID 262 (397)
T ss_pred CcCC---HHHHHHHHHHh-CCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhC--ccCceEEEeCHHHHH
Confidence 9777 99999999999 99999999996432221111111111111245799999999994 679999999999999
Q ss_pred HHHHHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc
Q 014172 323 ACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (429)
Q Consensus 323 ~l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~ 400 (429)
.+......+ ....+...+.++.++++. . +...+++++++++++++.+.|+++ |+++..+.++++. +.++..
T Consensus 263 ~l~~~~~~~~~~~~~~~~~~~a~~~al~~---~-~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~-~~~~~~- 335 (397)
T PRK06939 263 WLRQRSRPYLFSNSLAPAIVAASIKVLEL---L-EESDELRDRLWENARYFREGMTAA-GFTLGPGEHPIIP-VMLGDA- 335 (397)
T ss_pred HHHHhCccccccCCCCHHHHHHHHHHHHH---H-hcCHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCEEE-EEECCH-
Confidence 887653322 222233345555566653 1 223577889999999999999987 7777667777754 334421
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+|+++|+++ ||.+
T Consensus 336 ----------~~~~~~~~~L~~~-gI~v 352 (397)
T PRK06939 336 ----------KLAQEFADRLLEE-GVYV 352 (397)
T ss_pred ----------HHHHHHHHHHHHC-CceE
Confidence 1577899999988 8876
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=236.64 Aligned_cols=326 Identities=19% Similarity=0.318 Sum_probs=240.5
Q ss_pred HHHH-HHHHHHhcCCCeEEcCCCCCCCCC--hHHHHHHHHHHHHcC-----CCCCCCCCCCHHHHHHHHHHHHhhcCCCC
Q 014172 82 AITD-QATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEENGLSY 153 (429)
Q Consensus 82 ~~~~-~~~~~~~~g~~~i~L~~g~~~~~~--p~~v~~a~~~~~~~~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~ 153 (429)
.+++ ....++..| .|+|+.|+|..-+ ..-+.+...+.+.++ ..+|+.++|...|.+++++.+++++|+.+
T Consensus 18 ~lMdDl~d~Lrt~g--~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwni 95 (417)
T COG3977 18 QLMDDLNDGLRTPG--AIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNI 95 (417)
T ss_pred HHHHHHHhhccCCC--ceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCC
Confidence 3443 344454444 9999999987432 122344444444443 46899999999999999999999999999
Q ss_pred CCCcEEEecChHHHHHHHHHHhcC---CC--CEEEEc-CCCCCChHHHHHHcCCEEEE---ecCCCCCC--CCCCHHHHH
Q 014172 154 TPDQILVSNGAKQSILQAVLAVCS---PG--DEVIIP-APFWVSYPEMARIADATPVI---LPTRISEN--FLLDPKVLE 222 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~~---~g--d~Vlv~-~p~y~~~~~~~~~~g~~~~~---v~~~~~~~--~~~d~e~l~ 222 (429)
+++||.+|+|++.+.+.++..+.. .| ..|++| .|.|.+|.++...-..=|-. +...+++. +.+|.+.+.
T Consensus 96 t~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~ 175 (417)
T COG3977 96 TAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH 175 (417)
T ss_pred ccceeeecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccCHHHcc
Confidence 999999999999999998888753 24 346655 68898887654322211111 11122232 456777664
Q ss_pred hhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccC
Q 014172 223 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFS 301 (429)
Q Consensus 223 ~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~S 301 (429)
+.+++.+|+++-|.||||.+++.+|+.+|.++|+.| |+.+|+|.+|+.- |.+- -+.+.... .++++.|.|+|
T Consensus 176 --i~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~-giPliIDnAYg~P-FP~i---ifsd~~~~w~~NiilC~SLS 248 (417)
T COG3977 176 --IGESTGAICVSRPTNPTGNVLTDEELAKLDALARQH-GIPLIIDNAYGVP-FPGI---IFSDATPLWNENIILCMSLS 248 (417)
T ss_pred --cccccceEEecCCCCCCCCcccHHHHHHHHHHhhhc-CCcEEEecccCCC-CCce---ecccccccCCCCEEEEeehh
Confidence 457889999999999999999999999999999999 9999999999841 1111 11111111 48899999999
Q ss_pred hhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CC-
Q 014172 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LE- 379 (429)
Q Consensus 302 K~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~- 379 (429)
| +|+||.|+|.++++++++..+..+....+..++.++++.+..+++.+...+-.-+-++.-|+.+.+...+.|+. +|
T Consensus 249 K-~GLPG~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~ 327 (417)
T COG3977 249 K-LGLPGSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPE 327 (417)
T ss_pred h-cCCCCcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCc
Confidence 9 58999999999999999999999988888899999999999999875432211223455677777777777765 44
Q ss_pred -CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 -GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 -g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+.+|+|++|+|+-+.+.. .+.+++.++|.++ ||.+
T Consensus 328 ~~~~iHkpEGAIFlWLWf~dLP----------Itt~~LYq~LKa~-Gvl~ 366 (417)
T COG3977 328 YRCLIHKPEGAIFLWLWFKDLP----------ITTEELYQRLKAR-GVLM 366 (417)
T ss_pred cceeeecCCcceeehhhhccCC----------CCHHHHHHHHHhC-eEEE
Confidence 366789999999999887651 4789999998776 8764
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-31 Score=261.59 Aligned_cols=296 Identities=18% Similarity=0.205 Sum_probs=224.8
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCCCCC---CC----HHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPNA---GT----LELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~~~~---G~----~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+++|+|+.|+ +++++++++.+++.+++.+....|+++. |. .+|++++|++++ .+++++++|+
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g--------~~~~ii~~~~ 107 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLG--------TEDTILYASC 107 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhC--------CCcEEEECch
Confidence 567899999999 5888899999999999876334676666 76 677788887763 2567888899
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCC
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 238 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~ 238 (429)
++++..++.+++++||.|++++|.|+++...++..+.+.+.++ . +|++++++.+++ ++++|++.+++
T Consensus 108 ~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~----~---~d~~~l~~~i~~~~~~~~~~~~v~~~~v~ 180 (393)
T TIGR01822 108 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYA----N---NDMADLEAQLKEARAAGARHRLIATDGVF 180 (393)
T ss_pred HHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeC----C---CCHHHHHHHHHhhhhcCCCceEEEEeCCc
Confidence 9999999999999999999999999999999999888876554 1 589999988864 67888889999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC-CCCceEEEeccChhcccccceeeEEEcC
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~v~~~ 317 (429)
||||.+.+ +++|+++|++| |+++|+||+|....++... .......+ ..+.+++++||||.+ +|+|+||++++
T Consensus 181 ~~tG~~~~---l~~i~~la~~~-~~~li~De~~~~g~~~~~~-~~~~~~~~~~~~~di~~~s~sK~l--~g~r~G~~~~~ 253 (393)
T TIGR01822 181 SMDGVIAP---LDEICDLADKY-DALVMVDECHATGFLGPTG-RGSHELCGVMGRVDIITGTLGKAL--GGASGGFTTAR 253 (393)
T ss_pred cCCCCcCC---HHHHHHHHHHc-CCEEEEECCccccCcCCCC-CchHHhcCCCCCCeEEEEEChHHh--hCCCcEEEEeC
Confidence 99999998 89999999999 9999999999643332211 11111111 124679999999987 47899999999
Q ss_pred HHHHHHHHHHhhcc-cC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEe
Q 014172 318 KHFVAACNKIQSQF-TS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395 (429)
Q Consensus 318 ~~~~~~l~~~~~~~-~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~ 395 (429)
+++++.+......+ .. +.+...+.++.++++. .+..++++++++++++++.+.|+++ |+++..+.+++ +.+.
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~i~ 327 (393)
T TIGR01822 254 KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEM----LEASNELRDRLWANTRYFRERMEAA-GFDIKPADHPI-IPVM 327 (393)
T ss_pred HHHHHHHHHhCccceecCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEE
Confidence 99999887643322 22 2344445556666654 2335677889999999999999887 88776555554 4455
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++. .+..+|+++|+++ ||.+
T Consensus 328 ~~~~-----------~~~~~l~~~L~~~-gI~v 348 (393)
T TIGR01822 328 LYDA-----------VLAQRFARRLLEE-GIYV 348 (393)
T ss_pred eCCH-----------HHHHHHHHHHHHC-CeeE
Confidence 4431 1467899999877 8876
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=267.43 Aligned_cols=314 Identities=20% Similarity=0.266 Sum_probs=236.4
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCC-------CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFT-------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+++|||+.|+ +++..++++.+++.+++++.-. .|++..+..+|+++|++++. .++.|++++|+
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~-------~~~~i~~s~G~ 179 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLG-------TPDSILYSYGL 179 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhC-------CCCEEEECCHH
Confidence 577899999886 6888899999999999976212 35555567788888888874 46789999888
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc--ccCC-cEEEEcCCCCCc
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKS-RLLILCSPSNPT 241 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l--~~~~-~~i~l~~p~NPt 241 (429)
+ ++..++.+++++||.|++....|..+...+.+.|.+++.++.++.+++..+++++++.. .+++ ++|++++++|++
T Consensus 180 ~-a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~ 258 (481)
T PLN02822 180 S-TIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNS 258 (481)
T ss_pred H-HHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCC
Confidence 7 56779999999999999998888888888999999999998754333333344443322 1344 688889999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCC--ccccCCCCCCceEEEeccChhcccccceeeEEEcCHH
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT--SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~--~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~ 319 (429)
|.+++ +++|.++|++| |+++|+||+|+.++++..+.. ....+.. .+.+|+++||||.+|++| ||++++++
T Consensus 259 G~i~~---L~~i~~l~~k~-~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~-~~~dii~~s~sKalg~~G---G~i~g~~~ 330 (481)
T PLN02822 259 GQIAP---LDEIVRLKEKY-RFRVLLDESNSFGVLGKSGRGLSEHFGVPI-EKIDIITAAMGHALATEG---GFCTGSAR 330 (481)
T ss_pred CCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCChHHHcCCCC-CCCeEEEecchhhhhhCC---eEEEcCHH
Confidence 99999 89999999999 999999999998777632221 1111111 356799999999999899 99999999
Q ss_pred HHHHHHHHhhcccCCC--chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecC
Q 014172 320 FVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~ 397 (429)
+++.++.....+.++. ++..+.++.++|+. .++ ..+++++++++++++.+.|++++|+.+..+.+++|+++.++
T Consensus 331 ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~---l~~-~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~ 406 (481)
T PLN02822 331 VVDHQRLSSSGYVFSASLPPYLASAAITAIDV---LED-NPSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLE 406 (481)
T ss_pred HHHHHHhcCCceeeccccCHHHHHHHHHHHHH---HHh-CHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeC
Confidence 9998876555445544 46677888888875 222 35788999999999999999977888887888999999996
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+..+.. ++ ......+++++|++++||.+.
T Consensus 407 ~~~~~~-~~--~~~~~~~~~~~Ll~e~GV~v~ 435 (481)
T PLN02822 407 KSTGSA-KE--DLSLLEHIADRMLKEDSVLVV 435 (481)
T ss_pred CCcccc-cc--hHHHHHHHHHHHHhcCCEEEE
Confidence 421100 00 000136899999977799863
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=255.14 Aligned_cols=300 Identities=16% Similarity=0.178 Sum_probs=219.5
Q ss_pred hcCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcCCCC---CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 92 QAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 92 ~~g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~~~~~---Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
..|+++|+|+.|+| +++.|+++.+++.++++..... |....|..+++..+.+.+.+.+| .+++|++++|+.+.
T Consensus 13 ~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~~G~~~~ 89 (360)
T TIGR00858 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKG---TEAALLFSSGYLAN 89 (360)
T ss_pred ECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCCEEEECchHHHH
Confidence 46788999999964 3445789999999988652122 22223444433334344433344 35678888886555
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc----CCcEEEEcCCCCCccC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGS 243 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPtG~ 243 (429)
+ .++.+++++||+|++++|+|..+...++..|++++.++. +|++.+++.++. +++++++++++||||.
T Consensus 90 ~-~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~ 161 (360)
T TIGR00858 90 V-GVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTDGVFSMDGD 161 (360)
T ss_pred H-HHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEeCCccCCCC
Confidence 4 577888999999999999999999999999999988763 488899888864 4678888999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC--CccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH--TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~--~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~ 321 (429)
..+ +++|.++|++| +++||+||+|..+.++.... .....+.. .+++|+++||||.|+++| ||++++++++
T Consensus 162 ~~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~s~sK~~~~~g---G~~~~~~~~~ 233 (360)
T TIGR00858 162 IAP---LPQLVALAERY-GAWLMVDDAHGTGVLGEDGRGTLEHFGLKP-EPVDIQVGTLSKALGSYG---AYVAGSQALI 233 (360)
T ss_pred CcC---HHHHHHHHHHc-CcEEEEECcccccCcCCCCCchHHhcCCCc-cCCcEEEEechhhhhccC---cEEEcCHHHH
Confidence 998 89999999999 99999999998766543211 11222221 467899999999999767 9999999998
Q ss_pred HHHHHHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCc
Q 014172 322 AACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399 (429)
Q Consensus 322 ~~l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~ 399 (429)
+.+......+ ..+.+...+.++.++++. .+..+.++++++++++++.+.|+++ ++++. +.+++++|+.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~ 307 (360)
T TIGR00858 234 DYLINRARTLIFSTALPPAVAAAALAALEL----IQEEPWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGDN 307 (360)
T ss_pred HHHHHhCccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCCH
Confidence 8886554332 223445555566677764 2234567889999999999999987 77766 44566788888642
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+++++|+++ ||.+
T Consensus 308 -----------~~~~~~~~~l~~~-gI~v 324 (360)
T TIGR00858 308 -----------ASALALAEELQQQ-GIFV 324 (360)
T ss_pred -----------HHHHHHHHHHHHC-CeeE
Confidence 1467899998765 8876
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-30 Score=249.97 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=214.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEc
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~ 185 (429)
.+..+|.+.++..++++. |+ |..++.+++.+.+.+++| ++++++++++|+++++..++.+++++||.|+++
T Consensus 31 gl~~~~~~~~~~~~~~~~----~~---g~~~~~~~Le~~lA~~~g--~~~e~ilv~~gg~~a~~~~~~al~~~gd~Vli~ 101 (346)
T TIGR03576 31 GLAGGFKIDEEDLELLET----YV---GPAIFEEKVQELGREHLG--GPEEKILVFNRTSSAILATILALEPPGRKVVHY 101 (346)
T ss_pred cCCCChhHHHHHHHHHHH----hc---CCHHHHHHHHHHHHHHcC--CCcceEEEECCHHHHHHHHHHHhCCCCCEEEEC
Confidence 344578888888888754 32 566788888888877778 467899999999999999999999999999974
Q ss_pred ---CCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC
Q 014172 186 ---APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (429)
Q Consensus 186 ---~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~ 262 (429)
.|+|.+|...++..|++++.+ .+++.++. .+++++|+++ ++||+|.+++.+++++|+++|++| |
T Consensus 102 ~~d~p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~~~~lIiit-g~s~~G~v~~~~~L~~i~~la~~~-~ 168 (346)
T TIGR03576 102 LPEKPAHPSIPRSCKLAGAEYFES---------DELSELKK--IDGTSLVVIT-GSTMDLKVVSEEDLKRVIKQAKSK-E 168 (346)
T ss_pred CCCCCCchhHHHHHHHcCCEEecc---------CCHHHHhh--CcCceEEEEE-CCCCCCcccCHHHHHHHHHHHHHc-C
Confidence 579999999999999986432 14555433 2467887774 579999999999999999999999 9
Q ss_pred eEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHH
Q 014172 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKA 342 (429)
Q Consensus 263 i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~a 342 (429)
++||+||+|..++.+.....+...+ +..+++.|||| +++|+|+||+++++++++.+.+....+.++.+++.|.+
T Consensus 169 ~~livDEAy~~~~~~~~~~~~~~~~----~~divv~s~SK--alaG~r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~a 242 (346)
T TIGR03576 169 AIVLVDDASGARVRRLYGQPPALDL----GADLVVTSTDK--LMDGPRGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAA 242 (346)
T ss_pred CEEEEECCccccccccCCCCCHHHc----CCcEEEeccch--hccccceEEEEeCHHHHHHHHHhhcCcccCccHHHHHH
Confidence 9999999999865431111122222 23477889999 56899999999999999999998888777788889999
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHH
Q 014172 343 GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 422 (429)
Q Consensus 343 a~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~ 422 (429)
+.++|+. .. .+..++.++++++++.+.++++ .+.++.++ |+|++++.. ++.+++.++++
T Consensus 243 a~~aL~~---~~--~~~~~~~l~~r~~~~~~~l~~~---~~~~~~~~-f~~~~~~~~------------~~~~~~~~ll~ 301 (346)
T TIGR03576 243 VVRALEE---FE--LSRIRDAFKRKEEVYLRLFDKL---NVERTPTG-FVIKGVEEE------------KLIEIGLDLLR 301 (346)
T ss_pred HHHHHhh---cc--HHHHHHHHHHHHHHHHHHHHhC---CCCcCCCe-EEEEeCCCC------------CHHHHHHHHHH
Confidence 9999975 22 3567888999999888888754 44444455 799999742 46688999999
Q ss_pred hCCeec
Q 014172 423 KAQVLL 428 (429)
Q Consensus 423 ~~gV~v 428 (429)
++||+|
T Consensus 302 ~~gV~v 307 (346)
T TIGR03576 302 NYGIIT 307 (346)
T ss_pred hCCEEE
Confidence 999986
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=256.47 Aligned_cols=300 Identities=20% Similarity=0.244 Sum_probs=230.0
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+++|+|+.|+ +++++++.+.+++.+++.+. ...|....|..++++++++++.+.+| .++.+++++|+ +++
T Consensus 31 ~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g---~~~~i~~~sG~-~a~ 106 (385)
T TIGR01825 31 NGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKK---TEAALVFQSGF-NTN 106 (385)
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhC---CCcEEEECcHH-HHH
Confidence 577899999997 78888899999999988642 23576778999999999999998888 34678888885 556
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc----CCcEEEEcCCCCCccCC
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSV 244 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPtG~~ 244 (429)
..++.+++++||.|+++.|+|..+...+...|++++.++ .+|++++++.+.+ ++++|++++++||||.+
T Consensus 107 ~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~ 179 (385)
T TIGR01825 107 QGVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDV 179 (385)
T ss_pred HHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCc
Confidence 678888999999999999999999888888898887764 2688888876653 67888888899999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHH
Q 014172 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l 324 (429)
.+ +++|.++|++| |+++|+||+|..+.++.........+.-..++++++.||||.++++| ||+++++++++.+
T Consensus 180 ~~---~~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~~~~~~~~~~~~ 252 (385)
T TIGR01825 180 AP---LPEIVELAERY-GAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVVG---GYAAGHKELIEYL 252 (385)
T ss_pred cC---HHHHHHHHHHh-CCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcCC---CEEecCHHHHHHH
Confidence 99 89999999999 99999999998776542211111112212577899999999998766 9999999999988
Q ss_pred HHHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCC
Q 014172 325 NKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 402 (429)
Q Consensus 325 ~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~ 402 (429)
......+ +...+...+.++.++++. ..++ .+..++++++++++.+.|+++ |+++..|++++ +++.++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~~~--- 323 (385)
T TIGR01825 253 KNRARPFLFSTAQPPAVVAALAAAVDE---LQRS-PELMERLWDNTRFFKAGLGKL-GYDTGGSETPI-TPVVIGDE--- 323 (385)
T ss_pred HHhCccccccCCCCHHHHHHHHHHHHH---HhcC-HHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEECCH---
Confidence 7654322 222455667777777764 1222 245677788999999999987 88887777765 44444421
Q ss_pred cccCCCCCCChHHHHHHHHHhCCeec
Q 014172 403 EAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 403 ~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+|+++|+++ ||.+
T Consensus 324 --------~~~~~~~~~L~~~-gi~v 340 (385)
T TIGR01825 324 --------KAAQEFSRRLFDE-GIFA 340 (385)
T ss_pred --------HHHHHHHHHHHHC-CcEE
Confidence 1467899999988 8875
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=244.40 Aligned_cols=336 Identities=17% Similarity=0.201 Sum_probs=255.3
Q ss_pred ccccccCCchhHHHHHHHHHHHhcC-CCeEEcCCCC--CCCCC---hHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAG-VSVIRLAAGE--PDFDT---PVLIAEAGINAIREG-FTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~L~~g~--~~~~~---p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia 142 (429)
+.+...++.++..+.+..+ +.+ ++.|||++|. ..-+. -+.|.+|....+.+. ...|.|..|.++++++++
T Consensus 3 ~~i~~~p~DpIlgL~e~f~---~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~ 79 (396)
T COG1448 3 EKIEAAPADPILGLKEAFK---ADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQ 79 (396)
T ss_pred cccccCCCCchhHHHHHHh---cCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHH
Confidence 3444455555555544443 333 3689999997 33222 255666666655443 467999999999999999
Q ss_pred HHHHhhcCCC---CCCCcE--EEecChHHHHHHHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCC
Q 014172 143 HKLKEENGLS---YTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215 (429)
Q Consensus 143 ~~l~~~~g~~---~~~~~i--~~t~G~~~al~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 215 (429)
+.+ +|.+ +..++| +.|.|+|.||..+...+. .+..+|++++|+|+++..++...|.++..+|+....+..
T Consensus 80 ~ll---FG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~ 156 (396)
T COG1448 80 KLL---FGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKG 156 (396)
T ss_pred HHh---cCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeecccccccc
Confidence 998 5644 344444 788999999998877664 466789999999999999999999999999988777777
Q ss_pred CCHHHHHhhccc--CCcEEEE-cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC-CCCccccCCCCC
Q 014172 216 LDPKVLESKLTE--KSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMW 291 (429)
Q Consensus 216 ~d~e~l~~~l~~--~~~~i~l-~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~-~~~~~~~~~~~~ 291 (429)
+|.+.+.+.+.. ...+|++ ...|||||..++.++|++|+++.+++ +++.+.|-+|.+|.-+.. ....++-+....
T Consensus 157 ~df~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r-~lip~~D~AYQGF~~GleeDa~~lR~~a~~~ 235 (396)
T COG1448 157 LDFDGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKER-GLIPFFDIAYQGFADGLEEDAYALRLFAEVG 235 (396)
T ss_pred ccHHHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHc-CCeeeeehhhhhhccchHHHHHHHHHHHHhC
Confidence 999999888864 3445555 55599999999999999999999999 999999999999754421 122233333333
Q ss_pred CceEEEeccChhcccccceeeEEEc---CHH----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHH---HHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMV 361 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~R~G~v~~---~~~----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~---~~~~~ 361 (429)
..++++.||||.||+.|.|+|.+.. +.+ +...+....+...++|+..+...+...|++..+..+| +..++
T Consensus 236 ~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr 315 (396)
T COG1448 236 PELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMR 315 (396)
T ss_pred CcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4489999999999999999999653 333 4445666677788899999999999999875443344 66789
Q ss_pred HHHHHHHHHHHHHhccC-C--CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 362 KAFRERRDFLVKSFGEL-E--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l-~--g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.+.|..+++.|++. + .+.+...+.|||.+..+ +.+-+.+|.+++||++
T Consensus 316 ~Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gl----------------s~~QV~rLree~~IY~ 369 (396)
T COG1448 316 QRILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGL----------------SPEQVDRLREEFGIYL 369 (396)
T ss_pred HHHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCC----------------CHHHHHHHHHhccEEE
Confidence 99999999999999984 2 37788899999988744 4477788999999975
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=252.74 Aligned_cols=289 Identities=18% Similarity=0.240 Sum_probs=209.2
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
+|+|++++++. +++.+.+++.+.. .+...|+|..+..+|+++|+++++ -+.+++++|+++++..++.+++
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~-~~~~~Y~~~~~~~~L~~~la~~~g--------~~~~~v~~~g~~a~~~~l~~~~ 70 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAP-VGDDVYGDDPTVNALQDYAAELSG--------KEAALFLPTGTQANLVALLSHC 70 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhcc-CCCcccCCCHHHHHHHHHHHHHhC--------CCeEEEeCchHHHHHHHHHHhc
Confidence 48899999888 7788999887754 345679888889999999999963 2345688888888888888889
Q ss_pred CCCCEEEEcCCCCCC-hHHH-HHHcC-CEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCCCH
Q 014172 177 SPGDEVIIPAPFWVS-YPEM-ARIAD-ATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPK 247 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~-~~~~-~~~~g-~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~~~ 247 (429)
++||+|+++.|+|.. |... +...| ++++.++++ .+|.+|+++|++++++ ++++|++|+|+ ||.+++.
T Consensus 71 ~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~~~ 146 (333)
T PRK10534 71 ERGEEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVLPR 146 (333)
T ss_pred CCCCeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CCeecCH
Confidence 999999999888753 4321 33444 688888764 3578999999999876 68899999766 5999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceee-EEEcCHHHHHHHHH
Q 014172 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVAACNK 326 (429)
Q Consensus 248 ~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G-~v~~~~~~~~~l~~ 326 (429)
+++++|+++|++| +++|++||+|.+...... ..+...+....+++ +.||||.|+++ +| |+++++++++.+.+
T Consensus 147 ~~l~~i~~~~~~~-~~~lvvDEA~~~~~~~~~-~~~~~~~~~~~~~~--~~s~SK~~~~~---~G~~~~~~~~~i~~~~~ 219 (333)
T PRK10534 147 EYLKQAWEFTRER-NLALHVDGARIFNAVVAY-GCELKEITQYCDSF--TICLSKGLGTP---VGSLLVGNRDYIKRARR 219 (333)
T ss_pred HHHHHHHHHHHHc-CCeEEeeHHHHHHHHHHc-CCCHHHHHhcCCEE--EEEeEcCCCCc---ccceEEcCHHHHHHHHH
Confidence 9999999999999 999999999873211100 11222221111323 34899998864 67 68899999999988
Q ss_pred HhhcccCCC--chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcc
Q 014172 327 IQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (429)
Q Consensus 327 ~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~ 404 (429)
+...+..+. +.+.|.++..+|+. .. +..++..++|+++.+.|+++ |+++.+| +++|+|++++..
T Consensus 220 ~~~~~~~~~~~~~~~~a~~~~~l~~------~~-~~~~~~~~~r~~l~~~L~~~-g~~~~~~-~~nfv~~~~~~~----- 285 (333)
T PRK10534 220 WRKMTGGGMRQAGILAAAGLYALKH------NV-ARLQEDHDNAAWLAEQLREA-GADVMRQ-DTNMLFVRVGEE----- 285 (333)
T ss_pred HHHHhCCchhhHHHHHHHHHHHHHh------hH-HHHHHHHHHHHHHHHHHHhC-CCccCCC-CceEEEEECCch-----
Confidence 776554333 34556666666642 12 23333445678999999998 8888777 577899999632
Q ss_pred cCCCCCCChHHHHHHHHHhCCeec
Q 014172 405 EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..++.+.| .+.||.|
T Consensus 286 -------~~~~~~~~l-~~~gi~v 301 (333)
T PRK10534 286 -------QAAALGEYM-RERNVLI 301 (333)
T ss_pred -------hHHHHHHHH-HHcCeee
Confidence 466776555 5559986
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=229.88 Aligned_cols=299 Identities=24% Similarity=0.325 Sum_probs=237.8
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
-|++++.|+.++.+..++|+-.+ --..| +.....+++.+++.- -++.+++|+++.|+.+.|.+++
T Consensus 39 ~G~~iv~ld~~e~~ryPdP~q~e--------fk~~~-~d~rnk~ls~a~~~d------kpLt~dnic~GvGsDE~ID~ii 103 (375)
T KOG0633|consen 39 LGRDIVKLDANENPRYPDPEQME--------FKYVY-PDPRNKRLSDALAQD------KPLTSDNICVGVGSDELIDLII 103 (375)
T ss_pred cCCCceEeccccCCCCcCHHHcc--------ccccc-CCcccchhhhhcccC------CCCCccceEEecCcHHHHHHHH
Confidence 47789999999966555443311 12345 344556777776643 2478999999999999999999
Q ss_pred HHhcCCC-CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc--cCCcEEEEcCCCCCccCCCCHHH
Q 014172 173 LAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 173 ~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~--~~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
++.|.|| ++|+...|+|..|.-.+...+++++.+|+++ +|.++.|.+.+.+. .++|.+++++|+||||..+..++
T Consensus 104 R~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~d 181 (375)
T KOG0633|consen 104 RCVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDD 181 (375)
T ss_pred hheecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhccccceEEEEcCCCCCCcccccHHH
Confidence 9999999 8999999999999999999999999999976 68899999999885 47899999999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~ 329 (429)
+..|.+.-. |.+|++||+|.+|.-.+ +-..+...+++.+++.+|||.||++|+|+||...+..+++.+.+.+.
T Consensus 182 i~KiLe~p~---nglVVvDEAYidFsg~~----S~~~lV~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~Ka 254 (375)
T KOG0633|consen 182 ILKILEMPD---NGLVVVDEAYIDFSGVE----SRMKLVKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAKA 254 (375)
T ss_pred HHHHHhCCC---CcEEEEeeeeEeecccc----ccchHhHhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhccC
Confidence 888776532 67888899999975322 33445556899999999999999999999999999999999999888
Q ss_pred cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEEEecCCccCCcccCCC
Q 014172 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 330 ~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
+++ .|..+..++++++... ....++..++.+-+.|.++...|.+++++. +..+.-+.|+.+++.+.-.
T Consensus 255 PYN--iS~~~s~~AL~Als~~--n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n------- 323 (375)
T KOG0633|consen 255 PYN--ISVAGSVAALAALSDS--NGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDN------- 323 (375)
T ss_pred Ccc--ccchhHHHHHHhcCcc--cchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCc-------
Confidence 775 6788888899999853 246688889999999999999999988765 3345556678899875300
Q ss_pred CCCChHHHHHHHHHhCCeec
Q 014172 409 KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~v 428 (429)
.-+..+..++..+.||.|
T Consensus 324 --~~akkly~q~at~~gVvV 341 (375)
T KOG0633|consen 324 --GMAKKLYKQDATKMGVVV 341 (375)
T ss_pred --HHHHHHHHHHHHhcceEE
Confidence 124455566666778875
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=244.40 Aligned_cols=299 Identities=19% Similarity=0.191 Sum_probs=218.4
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+++|+|+.|++ ++.+|+.+.+++.+.+... ...|....|...+++.+++.+.+.+| .++.|+++ ++++++
T Consensus 37 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~---~~~~i~~~-~g~~~~ 112 (385)
T PRK05958 37 DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFG---AERALLFS-SGYAAN 112 (385)
T ss_pred CCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEC-cHHHHH
Confidence 6788999999975 4556789999999988651 11233334556666666666666666 34455555 455666
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCC
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~ 245 (429)
..++..++++||.|++++|+|+.+...++..|++++.++. .|++.+++.+++ ++.++++.+++||||...
T Consensus 113 ~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~ 185 (385)
T PRK05958 113 LAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVFSMDGDLA 185 (385)
T ss_pred HHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecccCCCCcC
Confidence 6677888999999999999999999999999999988874 378899988865 245555677899999998
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC--CCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
+ +++|.++|++| |+++|+||+|..+.++.. .......+. ..+++|++.||||.++++| ||+++++++++.
T Consensus 186 ~---l~~i~~ia~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~-~~~~~i~~~s~sK~~~~~G---g~~~~~~~~~~~ 257 (385)
T PRK05958 186 P---LAELVALARRH-GAWLLVDEAHGTGVLGPQGRGLAAEAGLA-GEPDVILVGTLGKALGSSG---AAVLGSETLIDY 257 (385)
T ss_pred C---HHHHHHHHHHh-CCEEEEECcccccccCCCCCchHHhhCCC-CCCceEEEEechhhcccCC---cEEEcCHHHHHH
Confidence 8 89999999999 999999999986655422 111111232 2467899999999999777 999999998888
Q ss_pred HHHHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC
Q 014172 324 CNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (429)
Q Consensus 324 l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~ 401 (429)
+.+....+ ..+.+...+.++.++++. .++. ..+.+++.++++++.+.|+++ |+++.++.++| +|+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~aa~~aal~~---~~~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~~~~~~~-- 329 (385)
T PRK05958 258 LINRARPFIFTTALPPAQAAAARAALRI---LRRE-PERRERLAALIARLRAGLRAL-GFQLMDSQSAI-QPLIVGDN-- 329 (385)
T ss_pred HHHhCccceecCCCCHHHHHHHHHHHHH---HhcC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCH--
Confidence 76543222 223445555556677764 1222 567788999999999999987 78777676665 67777642
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+++++|.++ ||.|
T Consensus 330 ---------~~~~~~~~~l~~~-gI~v 346 (385)
T PRK05958 330 ---------ERALALAAALQEQ-GFWV 346 (385)
T ss_pred ---------HHHHHHHHHHHHC-CceE
Confidence 2567899999765 8876
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=242.75 Aligned_cols=295 Identities=17% Similarity=0.206 Sum_probs=211.7
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCC-------CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFT-------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~-------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
|++.++++.++ .+++.++.+.+++.+++..... .|+......+|++++++++ | .++.|++++|+
T Consensus 45 ~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~----g---~~~~i~~~sG~- 116 (410)
T PRK13392 45 PRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLH----G---KESALLFTSGY- 116 (410)
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHh----C---CCCEEEECcHH-
Confidence 45678888776 7888899999999998865211 1221112456666666665 4 34667777775
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc----ccCCcEEEEcCCCC
Q 014172 166 QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL----TEKSRLLILCSPSN 239 (429)
Q Consensus 166 ~al~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l----~~~~~~i~l~~p~N 239 (429)
+++..++..++. +||.|+++.+.|..+...++..|+++..++. + |.+.+++.+ .+++++|++++|+|
T Consensus 117 ~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~---~----d~~~l~~~l~~~~~~~t~~v~i~~~~n 189 (410)
T PRK13392 117 VSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRH---N----DLADLEEQLASVDPDRPKLIAFESVYS 189 (410)
T ss_pred HHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeC---C----CHHHHHHHHHhccCCCCEEEEEeCCCC
Confidence 566667776653 8999988888888888888889999877753 2 444444444 35789999999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc-eEEEeccChhcccccceeeEEEcCH
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
|||.+++ +++|.++|++| ++++|+||+|....|+.... .+....+..++ .++++||||.||++| ||+++++
T Consensus 190 ~tG~~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~g~-g~~~~~~~~~~~div~~tlsK~~g~~G---G~~~~~~ 261 (410)
T PRK13392 190 MDGDIAP---IEAICDLADRY-NALTYVDEVHAVGLYGARGG-GIAERDGLMDRIDMIQGTLAKAFGCLG---GYIAASA 261 (410)
T ss_pred CCccccc---HHHHHHHHHHc-CCEEEEECCccccCcCCCCC-chhhhccCCCCCcEEEEEChHhhhccc---chhhcCH
Confidence 9999999 89999999999 99999999999655543221 11121111223 488999999999888 9999999
Q ss_pred HHHHHHHHHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEec
Q 014172 319 HFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 319 ~~~~~l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l 396 (429)
++++.+++....+ +.+.+.+.+.++.++|+. .+.....+++++++++++.+.|+++ |+++.+++++++ .+.+
T Consensus 262 ~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~-~i~~ 335 (410)
T PRK13392 262 DLIDFVRSFAPGFIFTTALPPAVAAGATAAIRH----LKTSQTERDAHQDRVAALKAKLNAN-GIPVMPSPSHIV-PVMV 335 (410)
T ss_pred HHHHHHHHhCcchhccCcCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCEE-EEEe
Confidence 9999888766543 334566778888888875 2333456678899999999999988 888877777764 3444
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.. .+..+++++|++++||.+
T Consensus 336 ~~~-----------~~~~~~~~~L~~~~GI~v 356 (410)
T PRK13392 336 GDP-----------TLCKAISDRLMSEHGIYI 356 (410)
T ss_pred CCH-----------HHHHHHHHHHHHhCCEEE
Confidence 321 135789999987779886
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=236.98 Aligned_cols=296 Identities=19% Similarity=0.193 Sum_probs=215.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC---------CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN---------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~---------~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
+.|.|+.+--. +.|..+.+++.+.+.....+.... ....++|+.+++++ |.. ++++|++|+|+++
T Consensus 19 ~~~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----g~~-~~~~i~~~~~~t~ 92 (401)
T PRK10874 19 AGVYLDSAATA-LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL----NAP-DAKNIVWTRGTTE 92 (401)
T ss_pred ceEEEeCCccc-CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc----CCC-CCCEEEEECCHHH
Confidence 47888888765 357789999988876422111100 11345666666665 421 6789999999999
Q ss_pred HHHHHHHHh----cCCCCEEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 167 SILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 167 al~~~l~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
+++.++.++ +++||+|++++|.|++ +...++..|++++.++.+. ++.+|++++++.+++++++|++++|+
T Consensus 93 ~i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~i~~~~ 170 (401)
T PRK10874 93 SINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITPRTRILALGQMS 170 (401)
T ss_pred HHHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCcCcEEEEEeCCc
Confidence 999999997 4789999999999875 4456778899999999853 45689999999999999999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
||||.+++ +++|+++|+++ |+++|+|++|+...+ +..+.. .+..+++.|++|.+|.+| +||+++++
T Consensus 171 n~tG~~~~---~~~i~~l~~~~-g~~~ivD~a~~~g~~----~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~ 236 (401)
T PRK10874 171 NVTGGCPD---LARAITLAHQA-GMVVMVDGAQGAVHF----PADVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKS 236 (401)
T ss_pred ccccCcCC---HHHHHHHHHHc-CCEEEEECCcccccc----cCCchh----cCCCEEEEecccccCCCc--cEEEEEch
Confidence 99999999 88999999999 999999999975222 122222 245588899999988666 69999999
Q ss_pred HHHHHHHHHh---------------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 319 HFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 319 ~~~~~l~~~~---------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
++++.+..+. .....+++..++.++.++++.- .+....+..++.++.++++.+.|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l--~~~g~~~~~~~~~~l~~~l~~~l~~ 314 (401)
T PRK10874 237 ELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWL--ADIDINQAESWSRSLATLAEDALAK 314 (401)
T ss_pred HHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 8887654221 0011234555666666666530 0222445667778889999999999
Q ss_pred CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+++..+..+.++++.+++. +..++.+.|.+ +||.|
T Consensus 315 ~~g~~~~~~~~~~i~~~~~~~~------------~~~~~~~~L~~-~gI~v 352 (401)
T PRK10874 315 LPGFRSFRCQDSSLLAFDFAGV------------HHSDLVTLLAE-YGIAL 352 (401)
T ss_pred CCCEEEeCCCCCcEEEEEECCc------------CHHHHHHHHHH-CCcEE
Confidence 8898877655555566777642 56788877755 58876
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=239.22 Aligned_cols=300 Identities=22% Similarity=0.308 Sum_probs=218.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-----CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEec-ChHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSI 168 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~-G~~~al 168 (429)
.++++|+.|.|++++|+.+.++..++ ...+.|++ ..|.+++++++++++.+.+|. +.+++++++ |++++.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~~~v~~~~~g~~~~~ 95 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILEN--EFYTAYTPYQPEISQGRLQALFELQTMLCELTGM--DVANASLQDEATAAAE 95 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccc--cCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCC--CccceeccCchHHHHH
Confidence 35699999999999998888877766 33456666 689999999999999999985 444676666 455555
Q ss_pred HHHHHHhcCC--CCEEEEcCCCCCChHHHHHHcC----CEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSP--GDEVIIPAPFWVSYPEMARIAD----ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g----~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
..++.+++.+ ||+|++++|.|+.+...+...| ++++.+++++ ++.+|++++++++++++++|++++|+ |||
T Consensus 96 ~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t~~viv~~~~-~~G 172 (398)
T cd00613 96 AAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEVAALMVQYPN-TLG 172 (398)
T ss_pred HHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCeEEEEEECCC-CCc
Confidence 5555666666 9999999999999999888887 9999998853 35689999999999999999999985 899
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc----cceeeEEEcCH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT----GWRLGYIAGPK 318 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~----G~R~G~v~~~~ 318 (429)
.+.+ .+++|.++|++| |+++|+|+++...... .. .+..+.+++++|++|++ ++ |+|+||++.++
T Consensus 173 ~~~~--~l~~i~~la~~~-g~~livD~~~~~~~~~----~~----~~~~~~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~ 240 (398)
T cd00613 173 VFED--LIKEIADIAHSA-GALVYVDGDNLNLTGL----KP----PGEYGADIVVGNLQKTG-VPHGGGGPGAGFFAVKK 240 (398)
T ss_pred eecc--hHHHHHHHHHhc-CCEEEEEeccccccCC----CC----hHHcCCCEEEeeccccC-CCCCCCCCceeEEEEhh
Confidence 9954 469999999999 9999999987542211 01 11235669999999998 56 89999999998
Q ss_pred HHHHHHHHH------------------------------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 014172 319 HFVAACNKI------------------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (429)
Q Consensus 319 ~~~~~l~~~------------------------------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r 368 (429)
++++.+... ......+.....+.+...+... ..+.++++++++++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~---~~~g~~~~~~~~~~~~ 317 (398)
T cd00613 241 ELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYL---GPEGLKEIAERAHLNA 317 (398)
T ss_pred hhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHH
Confidence 887764110 0001111223333333333333 3567888999999999
Q ss_pred HHHHHHhccCCCceeecCCceEE--EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 369 DFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 369 ~~l~~~L~~l~g~~~~~p~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.+.|+++++.. .+.+.++ ++++++...+ .+..+++++|+++ ||.+
T Consensus 318 ~~l~~~L~~~~~~~--~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~L~~~-gi~~ 367 (398)
T cd00613 318 NYLAKRLKEVGGVL--PFNGPFFHEFVLRLPPLYG---------IRAEDLAKALIDG-GFHA 367 (398)
T ss_pred HHHHHHHHhcCCcc--cCCCCeeEEEEEEcCCcch---------HHHHHHHHhhhhc-Cccc
Confidence 99999999885443 2444444 5677753100 2577899998876 7654
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-28 Score=236.38 Aligned_cols=296 Identities=19% Similarity=0.294 Sum_probs=203.1
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINA-IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
+|+|+.|.++. +++.+.+++.+. .......| .+...+|+++++++++. +.+++++++++++..++.++
T Consensus 7 ~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~--~~~~~~l~~~la~~~~~--------~~~~~~~~Gs~a~~~~l~~~ 75 (353)
T PLN02721 7 VVDLRSDTVTK-PTDAMRAAMANAEVDDDVLGY--DPTALRLEEEMAKIFGK--------EAALFVPSGTMGNLISVLVH 75 (353)
T ss_pred hhhhhcccccC-CCHHHHHHHHhccCCCcccCC--CHHHHHHHHHHHHHhCC--------ceeEEecCccHHHHHHHHHH
Confidence 68999999986 567788887653 22222333 33468999999999741 23455555565666778888
Q ss_pred cC-CCCEEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-------cCCcEEEEcC-CCCCccC
Q 014172 176 CS-PGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLT-------EKSRLLILCS-PSNPTGS 243 (429)
Q Consensus 176 ~~-~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-------~~~~~i~l~~-p~NPtG~ 243 (429)
++ +||+|++++|+|..... .+...|++++.+|.+ .++.+|++.+++.++ +++++|++++ ++||||.
T Consensus 76 ~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~ 153 (353)
T PLN02721 76 CDVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNN--EDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGR 153 (353)
T ss_pred ccCCCCeEEEcCccceehhcccchhhhcCceeEecCCC--cCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCc
Confidence 87 99999999999865444 577889999999875 345689999999997 6889999966 5789999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE-EEcCHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVA 322 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~-v~~~~~~~~ 322 (429)
+++.+++++|.++|++| |+++|+|++|....+.. ...+...+.. +...++.||||.++. ++|| +++++++++
T Consensus 154 ~~~~~~l~~l~~l~~~~-g~~livD~a~~~~~~~~-~~~~~~~~~~--~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~ 226 (353)
T PLN02721 154 CLSVEYTDKVGELAKRH-GLKLHIDGARIFNASVA-LGVPVHRLVK--AADSVSVCLSKGLGA---PVGSVIVGSKSFIR 226 (353)
T ss_pred cccHHHHHHHHHHHHHc-CCEEEEEchhhhcchhh-hCCCHHHHhh--hCCEEEEecccccCC---ceeeEEecCHHHHH
Confidence 99999999999999999 99999999986422110 0111111111 223456679999873 3565 678999988
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee--ecCCceEEEEEecCCcc
Q 014172 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM--SEPQGAFYLFIDFSTYY 400 (429)
Q Consensus 323 ~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~--~~p~~~~~~~~~l~~~~ 400 (429)
.+.........+++..++.++...... +++++.+. +..++++.+.+.|++++++.+ .+|++ +|+|++++...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~-~~~~~~~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~ 300 (353)
T PLN02721 227 KAKRLRKTLGGGMRQVGVLAAAALVAL----QENVPKLE-DDHKKAKLLAEGLNQIKGLRVNVAAVET-NIVYFDITDGS 300 (353)
T ss_pred hHHHHHHhcCCCeehhHHHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHhCCCcEEecCCccc-eEEEEEccCCc
Confidence 877766544433433433333222221 33444433 335678899999998878754 44555 45999987420
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ .+..+++++|.+ .||.+
T Consensus 301 ~---------~~~~~~~~~L~~-~gi~v 318 (353)
T PLN02721 301 R---------ITAEKLCKSLEE-HGVLL 318 (353)
T ss_pred c---------ccHHHHHHHHHh-CCcEE
Confidence 0 157889999974 58875
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=236.97 Aligned_cols=296 Identities=19% Similarity=0.183 Sum_probs=215.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC--CCCCCCC-------CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF--TRYTPNA-------GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~--~~Y~~~~-------G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
+.|.|+.+--. ++|+.+.+++.+.+.... ..+++.. ...++|+.++++++ .. ++++|++|+|+++
T Consensus 16 ~~iyld~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g----~~-~~~~i~~t~g~t~ 89 (398)
T TIGR03392 16 GTVYLDSAATA-LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLN----AP-DAENIVWTRGTTE 89 (398)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhC----CC-CCCeEEEeCChHH
Confidence 47899888766 357889999888775321 1122211 13457777777763 21 4689999999999
Q ss_pred HHHHHHHHh----cCCCCEEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 167 SILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 167 al~~~l~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
+++.++.++ +++||+|++++|.|++ +...++..|++++.++++. ++.+|++.+++++++++++|++++|+
T Consensus 90 ~l~~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~~i~~~t~lv~i~~~~ 167 (398)
T TIGR03392 90 SINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA--DLLPDIRQLPELLTPRTRILALGQMS 167 (398)
T ss_pred HHHHHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHHhccCceEEEEECcc
Confidence 999999987 4789999999999876 4456788999999999864 35689999999999999999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
||||.+++ +++|+++|+++ |+++|+|++|+...+ +..+.. .+..+++.|++|.+|++| +||+++++
T Consensus 168 n~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~~~~----~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~~~ 233 (398)
T TIGR03392 168 NVTGGCPD---LARAITLAHQY-GAVVVVDGAQGVVHG----PPDVQA----LDIDFYAFSGHKLYGPTG--IGVLYGKT 233 (398)
T ss_pred ccccccCC---HHHHHHHHHHc-CCEEEEEhhhhcCCC----CCChhh----cCCCEEEEecccccCCCc--eEEEEEcH
Confidence 99999999 88999999999 999999999975322 122222 234578888999988666 89999999
Q ss_pred HHHHHHHHHh---------------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 319 HFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 319 ~~~~~l~~~~---------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
++++.+.... +....+++..+..++.++++.- .+..+++..++.++.++++.+.|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l--~~~g~~~i~~~~~~l~~~l~~~l~~ 311 (398)
T TIGR03392 234 ELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWL--TDIDIAAAEAWSVSLADLAEERLAQ 311 (398)
T ss_pred HHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhc
Confidence 8877663221 0011134444555555555430 0223456677788889999999999
Q ss_pred CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+++..+..+.++++.+++. +..++.+.|.+ +||.|
T Consensus 312 l~g~~~~~~~~~~i~~~~~~~~------------~~~~l~~~L~~-~gI~v 349 (398)
T TIGR03392 312 LPGFRSFRCPGSSLLAFDFAGV------------HHSDLAALLAE-SGIAL 349 (398)
T ss_pred CCCeEEeCCCCCcEEEEEeCCc------------CHHHHHHHHHh-CCEEE
Confidence 8898876544455566777642 57788888755 58876
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=237.60 Aligned_cols=301 Identities=16% Similarity=0.114 Sum_probs=217.4
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcC-------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
++.++|..|++.. ++.+.+++...+... ...|+...+..++++.+++++.+.+|.+ ..+|++++ ++++
T Consensus 19 ~~~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~--~~~v~~~s-gt~a 93 (402)
T cd00378 19 RETLELIASENFT--SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAE--YANVQPHS-GSQA 93 (402)
T ss_pred HhCeeeeccCCcC--CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCC--ceeeecCC-cHHH
Confidence 3579998888764 678888887654221 1234455566788888888888888853 34565554 5789
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHHH-----HHHcCCEEEEecCCCC-CCCCCCHHHHHhhcc-cCCcEEEEcCCCCC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEM-----ARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNP 240 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~-~~~~~i~l~~p~NP 240 (429)
+..++.+++++||+|++++|+|.++... ++..|.+++.+++..+ +++.+|++++++.+. ++++++++++|+||
T Consensus 94 ~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~~ 173 (402)
T cd00378 94 NLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAYP 173 (402)
T ss_pred HHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcccC
Confidence 9999999999999999999999877543 6678888888877544 267899999999985 68999999999886
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCC-cccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH-
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK- 318 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~- 318 (429)
+ ..+ +++|+++|++| |++||+|++| .++.+.+....++. ...++++|+||++ +|+|.||+++++
T Consensus 174 ~--~~~---~~~I~~l~~~~-~~~li~D~a~~~g~~~~g~~~~~~~------~~dv~~~s~sK~l--~G~~gg~i~~~~~ 239 (402)
T cd00378 174 R--PID---FKRFREIADEV-GAYLLVDMAHVAGLVAGGVFPNPLP------GADVVTTTTHKTL--RGPRGGLILTRKG 239 (402)
T ss_pred C--CcC---HHHHHHHHHhc-CCEEEEEccchhhhhhcccCCCccc------CCcEEEeccccCC--CCCCceEEEeccH
Confidence 4 455 88999999999 9999999996 44544442222221 1237899999987 789999999987
Q ss_pred HHHHHHHHHhhcccCCCch-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCCceEEEEEec
Q 014172 319 HFVAACNKIQSQFTSGASS-ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 396 (429)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~-~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~~~~~~~~l 396 (429)
++++.+.+.......+.+. ..+.++..++... ...+.++.+++++++++++.+.|+++ |+++. .|.+++|+|+++
T Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~ 316 (402)
T cd00378 240 ELAKKINSAVFPGLQGGPHLHVIAAKAVALKEA--LEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDL 316 (402)
T ss_pred HHHHHHHHHhCccccCCchHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeC
Confidence 8888887665444333333 2333333344320 12256778888999999999999998 88775 467899999999
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.. + .+...+. ++++++||.+
T Consensus 317 ~~~-~---------~~~~~~~-~~l~~~gI~v 337 (402)
T cd00378 317 RPK-G---------ITGKAAE-DALEEAGITV 337 (402)
T ss_pred Ccc-C---------CCHHHHH-HHHHHcCcEE
Confidence 742 0 1344454 4567779987
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=232.43 Aligned_cols=297 Identities=19% Similarity=0.227 Sum_probs=213.4
Q ss_pred CeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCC---CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGE-PDFDTPVLIAEAGINAIREGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~---Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.+++|+.++ ...+.|+++++++.+.+++...+ |....|..+.++.+.+.+.+.+|. ++ +++++++++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~---~~-~iv~~sg~~a~~~~ 77 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK---EA-ALVFSSGYAANDGV 77 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCC---CC-EEEeccHHHHHHHH
Confidence 467777766 45555799999999998753222 222234455555555555555552 23 45556667788888
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-----CCcEEEEcCCCCCccCCCC
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-----~~~~i~l~~p~NPtG~~~~ 246 (429)
+++++++||.|++++|+|+++...++..|++++.++. +|++.+++.+++ +++++++++++||||...+
T Consensus 78 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~ 150 (349)
T cd06454 78 LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP 150 (349)
T ss_pred HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC
Confidence 8999999999999999999999889999999988762 477888887763 4677788999999999988
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC-CCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
+++|.++|++| ++++|+|++|....+.... ..+..+. ...+.+++++|+||.++++| ||+++++++++.+.
T Consensus 151 ---~~~i~~~~~~~-~~~livD~a~~~g~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~~~~g---G~i~~~~~~~~~~~ 222 (349)
T cd06454 151 ---LPELVDLAKKY-GAILFVDEAHSVGVYGPHG-RGVEEFGGLTDDVDIIMGTLGKAFGAVG---GYIAGSKELIDYLR 222 (349)
T ss_pred ---HHHHHHHHHHc-CCEEEEEccccccccCCCC-CChhhhccccccCcEEEeechhhhcccC---CEEECCHHHHHHHH
Confidence 89999999999 9999999999754332111 1111111 22467899999999998655 99999999888876
Q ss_pred HHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCc
Q 014172 326 KIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 403 (429)
Q Consensus 326 ~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~ 403 (429)
.....+ +...+...+.++.++++. ..+ .+..+++++++++.+.+.|.++ |+.+..+.++++.++.++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~-~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~---- 293 (349)
T cd06454 223 SYARGFIFSTSLPPAVAAAALAALEV---LQG-GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDP---- 293 (349)
T ss_pred HhchhhhccCCCCHHHHHHHHHHHHH---Hhc-CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCCh----
Confidence 654322 224556666677777764 222 4567889999999999999987 77776665666555544421
Q ss_pred ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 404 AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++++.|+++ ||.+
T Consensus 294 -------~~~~~~~~~L~~~-gI~~ 310 (349)
T cd06454 294 -------AKAVAFSDALLER-GIYV 310 (349)
T ss_pred -------HHHHHHHHHHHhC-CceE
Confidence 2567899998877 8875
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=236.89 Aligned_cols=305 Identities=16% Similarity=0.195 Sum_probs=217.5
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|.+ .++. ++.+.+++.+.+.... +....+..++++++++++.+..| .+++++|+|+++++.
T Consensus 37 dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~----~~~v~~~~gg~eA~~ 110 (396)
T PRK02627 37 DGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI--HTSNLYYIEPQEELAEKLVELSG----MDKVFFCNSGAEANE 110 (396)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcc--ccccccCCHHHHHHHHHHHhhcC----CCEEEECCCcHHHHH
Confidence 5778999998864 4555 5889999999886532 11222346889999999987754 379999999999999
Q ss_pred HHHHHhcCCC-------CEEEEcCCCCCChHHHHHHcCCEEE----EecCCCCCCC----CCCHHHHHhhcccCCcEEEE
Q 014172 170 QAVLAVCSPG-------DEVIIPAPFWVSYPEMARIADATPV----ILPTRISENF----LLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 170 ~~l~~l~~~g-------d~Vlv~~p~y~~~~~~~~~~g~~~~----~v~~~~~~~~----~~d~e~l~~~l~~~~~~i~l 234 (429)
.+++.+...+ ++|++..++|.++.......+.... ..++. .++ ..|++++++++.+++++|++
T Consensus 111 ~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~~~~~vii 188 (396)
T PRK02627 111 AAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAITDKTAAVML 188 (396)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcCCCeEEEEE
Confidence 9999775433 6799999999988766555443221 11111 111 12899999999888999999
Q ss_pred cCCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 235 CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 235 ~~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
+.++||+| .+++.+.+++|.++|++| ++++|+||+|.++.+.+. ..++.... .... +.||||.++ +|+|+||
T Consensus 189 ~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DE~~~g~g~~g~-~~~~~~~~-~~pd---i~t~sK~~~-~G~rig~ 261 (396)
T PRK02627 189 EPIQGEGGVNPADKEYLQALRELCDEN-GILLILDEVQTGMGRTGK-LFAYQHYG-IEPD---IMTLAKGLG-GGVPIGA 261 (396)
T ss_pred ecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhcCCCccCc-eeeehhcC-CCCC---EEEEcchhh-CCcccEE
Confidence 98999999 788999999999999999 999999999998766543 11221221 1112 447999999 9999999
Q ss_pred EEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEE
Q 014172 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393 (429)
Q Consensus 314 v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~ 393 (429)
+++++++++.+.......+++.+.+.|.++.++|+.... +++.++.++..+..++.+.+.+.+++.+....+ .|+++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~g~~~~ 339 (396)
T PRK02627 262 VLAKEKVADVFTPGDHGSTFGGNPLACAAALAVIEIIEE-EGLLENAAEVGEYLRAKLRELLEKYPGIKEVRG-LGLMIG 339 (396)
T ss_pred EEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeecc-CcEEEE
Confidence 999999988886554556677899999999999975211 233334444444444444444443433333333 466789
Q ss_pred EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++. +..+++++|+++ ||.+
T Consensus 340 i~~~~-------------~~~~~~~~l~~~-Gv~v 360 (396)
T PRK02627 340 IELDR-------------PAAEIVKKALEK-GLLI 360 (396)
T ss_pred EEecC-------------cHHHHHHHHHHC-CeEE
Confidence 98842 578999999987 9876
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-27 Score=230.24 Aligned_cols=292 Identities=15% Similarity=0.159 Sum_probs=202.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCC---------CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 106 DFDTPVLIAEAGINAIREGFTR---------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~---------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
+-+..+.+.+++.+.... ... +...+-..++++++++++ | . +++++|+|+++++..++.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~--~~i~~~~g~t~al~~~l~~~~ 80 (361)
T cd06452 10 GGRLTPEARKALIEWGDG-YSVCDFCRGRLDEIEKPPIKDFHHDLAEFL----G--M--DEARVTPGAREGKFAVMHSLC 80 (361)
T ss_pred CCCCCHHHHHHHHHHhcc-cCCccccccccccccCchHHHHHHHHHHHc----C--C--ceEEEeCCHHHHHHHHHHHhc
Confidence 334467777777766421 110 001122357777777775 4 2 789999999999999999999
Q ss_pred CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-------cCCcEEEEcCCCCCccCCCCHHH
Q 014172 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-------EKSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-------~~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
++||+|+++.++|.+....++..|++++.++.+.+++|.+|++.++++++ +++++|++++|+||||...+
T Consensus 81 ~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~--- 157 (361)
T cd06452 81 EKGDWVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD--- 157 (361)
T ss_pred CCCCEEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc---
Confidence 99999999999988877788999999999998765557899999999886 37889999999999999888
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~ 329 (429)
+++|.++|+++ ++++|+|++|... ..+.+... .+..++++|+||.++ ++.|+||+++++++++.+.+...
T Consensus 158 ~~~i~~~~~~~-~~~vivD~a~~~g----~~~~~~~~----~~~d~~~~s~~K~l~-~~~~~G~l~~~~~~~~~l~~~~~ 227 (361)
T cd06452 158 AKKIAKVCHEY-GVPLLLNGAYTVG----RMPVSGKE----LGADFIVGSGHKSMA-ASAPIGVLATTEEWADIVFRTSQ 227 (361)
T ss_pred HHHHHHHHHHc-CCeEEEECCcccC----CcCCCHHH----cCCCEEEecCCcccc-CCCCeEEEEECHHHHHHHhcccc
Confidence 88999999999 9999999999852 11122222 345699999999998 66699999999999998876543
Q ss_pred ccc--------CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec--CCceEEEEEecCCc
Q 014172 330 QFT--------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQGAFYLFIDFSTY 399 (429)
Q Consensus 330 ~~~--------~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~--p~~~~~~~~~l~~~ 399 (429)
.+. .......+.++.+++.. ..++++...+. .++++++.+.|++++|+++.. +....|+.++.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~-~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~ 303 (361)
T cd06452 228 MFKIKEVELLGCTLRGAPLVTLMASFPH---VKERVKRWDEE-VEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSF 303 (361)
T ss_pred ccccceeeeeccccCchHHHHHHHHHHH---HHHHHHHHHHH-HHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCc
Confidence 221 11122233444444442 13334333333 345578899999998988762 33344566776521
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.. .... ...+..++.++|+++ ||.
T Consensus 304 ~~-~~~~--~~~~~~~~~~~L~~~-gI~ 327 (361)
T cd06452 304 DE-IAKK--HKRRGYFLYSELKKR-GIH 327 (361)
T ss_pred ch-hhhh--ccccchhHHHHHHHc-Cce
Confidence 00 0000 001345799998776 886
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=235.13 Aligned_cols=303 Identities=16% Similarity=0.194 Sum_probs=214.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..|+|..|. +.++. ++.+.+++.+++.+... ....+..+.++.+++.+.+.+|. +++++++|+++++.
T Consensus 25 ~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~----~~~~~~~sg~~a~~ 98 (379)
T TIGR00707 25 NGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVH--VSNLYYTEPQEELAEKLVEHSGA----DRVFFCNSGAEANE 98 (379)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccc--cccccCCHHHHHHHHHHHhhCCC----CEEEEeCCcHHHHH
Confidence 567899999974 34454 58999999998875321 11112235566666666666663 49999999999999
Q ss_pred HHHHHhc---C----CCCEEEEcCCCCCChHHHHHHcCCEEEE----ecCCCCCCCCC--CHHHHHhhcccCCcEEEEcC
Q 014172 170 QAVLAVC---S----PGDEVIIPAPFWVSYPEMARIADATPVI----LPTRISENFLL--DPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 170 ~~l~~l~---~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~~--d~e~l~~~l~~~~~~i~l~~ 236 (429)
.+++++. . +||+|++++|+|..+...+...+..... .++..+..+.. |++.+++.+++++++|+++.
T Consensus 99 ~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~p 178 (379)
T TIGR00707 99 AALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVIVEP 178 (379)
T ss_pred HHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEEEEc
Confidence 8888652 2 3799999999999988777766654422 23322211111 89999999988899999977
Q ss_pred CCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE
Q 014172 237 PSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (429)
Q Consensus 237 p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~ 315 (429)
++||+|.. ++.+++++|.++|++| ++++|+||+|.++.+.+.. .++... ....+ +.+|||.++ +|+|+||++
T Consensus 179 ~~~~~g~~~~~~~~l~~i~~l~~~~-~~~~i~De~~~~~~~~g~~-~~~~~~-~~~~d---~~t~sK~~~-~G~riG~~~ 251 (379)
T TIGR00707 179 IQGEGGVNPASAEFLKALREICKDK-DALLIFDEVQTGIGRTGKF-FAYEHY-GIEPD---IITLAKGLG-GGVPIGATL 251 (379)
T ss_pred cccCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchh-hhHHhc-CCCCC---EEEEccccc-CCcccEEEE
Confidence 77788864 6899999999999999 9999999999987655421 121111 11222 337899999 999999999
Q ss_pred cCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-C--CceeecCCceEEE
Q 014172 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-E--GVKMSEPQGAFYL 392 (429)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l-~--g~~~~~p~~~~~~ 392 (429)
+++++++.+.........+.+.++|.++.++|+. .+ -.+..++++++++.+.+.|+++ . ++... +..|+|+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~---~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~g~~~ 325 (379)
T TIGR00707 252 AKEEVAEAFTPGDHGSTFGGNPLACAAALAVLEV---IE--KERLLENVKEKGDYFKERLEELGKNYPNKEV-RGKGLML 325 (379)
T ss_pred EcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH---HH--hhhHHHHHHHHHHHHHHHHHHHHhhCCCCcc-ccCceEE
Confidence 9999998887654445566889999999998874 12 1245677777888888877764 1 22212 2356678
Q ss_pred EEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+.++. +..+++++|.++ ||.+
T Consensus 326 ~~~~~~-------------~~~~~~~~l~~~-Gv~v 347 (379)
T TIGR00707 326 GIELEA-------------PCKDIVKKALEK-GLLV 347 (379)
T ss_pred EEEecC-------------cHHHHHHHHHHC-CcEE
Confidence 888863 467888887665 8876
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=238.58 Aligned_cols=299 Identities=17% Similarity=0.198 Sum_probs=208.1
Q ss_pred CCCeEEcCCCC-CCCCC-----hHHHHHHHHHHHH---cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 94 GVSVIRLAAGE-PDFDT-----PVLIAEAGINAIR---EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~-----p~~v~~a~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
+++.+||++++ ..+.. ++.+.+++.+.-. .....|+...+..+|++++|++++ .++.|++++|.
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g-------~~~ai~~~~G~ 171 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVG-------KPAAIVFGMGY 171 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhC-------CCcEEEECCHH
Confidence 45689998877 55542 3445555444311 012337667778889999998874 45678887776
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-------cCC-----cEE
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-------EKS-----RLL 232 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-------~~~-----~~i 232 (429)
...+ .++.+++++||.|++++|+|.++...++..|++++.++.+ |.+++++.++ +++ +++
T Consensus 172 ~an~-~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~l 243 (489)
T PLN02483 172 ATNS-TIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKII 243 (489)
T ss_pred HHHH-HHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEE
Confidence 5544 6788899999999999999999999999999999999853 4455544432 222 555
Q ss_pred EEcC-CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC--CCCCccccCCCCCCceEEEeccChhcccccc
Q 014172 233 ILCS-PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (429)
Q Consensus 233 ~l~~-p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 309 (429)
+++. ..|++|.+.+ +++|+++|++| ++++|+||+|+...++. ........+. ..+++|+++||||+||++|
T Consensus 244 ivve~v~s~~G~~~~---l~~I~~la~~~-~~~livDEa~s~g~~G~~G~g~~~~~~v~-~~~~dI~~~SfSKs~g~~G- 317 (489)
T PLN02483 244 VIVEGIYSMEGELCK---LPEIVAVCKKY-KAYVYLDEAHSIGAVGKTGRGVCELLGVD-PADVDIMMGTFTKSFGSCG- 317 (489)
T ss_pred EEECCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECcCccCccCCCCCchHHhcCCC-cccCcEEEEecchhcccCc-
Confidence 5544 4699999998 99999999999 99999999998544332 1122222322 2467899999999999887
Q ss_pred eeeEEEcCHHHHHHHHHHhhcc--cCCCchHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 310 RLGYIAGPKHFVAACNKIQSQF--TSGASSISQKAGVAALGL--GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 310 R~G~v~~~~~~~~~l~~~~~~~--~~~~~~~~q~aa~~~l~~--~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
||+++++++++.+....... ....+.....++.++|+. .....++..+++++++++++++.+.|+++ |+.+..
T Consensus 318 --G~i~~~~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~ 394 (489)
T PLN02483 318 --GYIAGSKELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLG 394 (489)
T ss_pred --eEEEcCHHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccC
Confidence 99999999999988764322 212233333334455531 00012345566889999999999999998 888776
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.++..+|+.+... .+..+|+++|+++ ||.|
T Consensus 395 ~~~sp~~~l~l~~~-----------~~~~~~~~~Ll~~-GI~v 425 (489)
T PLN02483 395 DNDSPVMPIMLYNP-----------AKIPAFSRECLKQ-NVAV 425 (489)
T ss_pred CCCCCEEEEEECCH-----------HHHHHHHHHHHHC-CcEE
Confidence 66666666665432 1456899999876 8876
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=233.04 Aligned_cols=263 Identities=14% Similarity=0.144 Sum_probs=192.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 214 (429)
.++++.+|+++ | .+.+++++|+++++..++.+++++||.|+++.+.|.+....++..|++++.++.+.++++
T Consensus 54 ~~~~e~lA~~~----g----~~~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~ 125 (370)
T TIGR02539 54 HDFLEDLAEFL----G----MDEARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEY 125 (370)
T ss_pred HHHHHHHHHHh----C----CCceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccC
Confidence 45666666665 3 245778999999999999999999999999988876666788999999999998765568
Q ss_pred CCCHHHHHhhccc-------CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 215 LLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 215 ~~d~e~l~~~l~~-------~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
.+|++++++.+++ ++++|++++|+||||...+ +++|.++|+++ |+++|+||+|..... ......
T Consensus 126 ~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~---l~~i~~la~~~-~~~livDea~~~g~~----~~~~~~- 196 (370)
T TIGR02539 126 KVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD---AGKVAKVCREK-GVPLLLNCAYTVGRM----PVSAKE- 196 (370)
T ss_pred CcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC---HHHHHHHHHHc-CCeEEEECccccCCc----CCCHHH-
Confidence 8999999999863 6789999999999999999 88999999999 999999999987321 111111
Q ss_pred CCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC--------CCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS--------GASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~--------~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
.+..++++||||+++ +|.|+||+++++++++.+.....++.. ......+.++.+++.. ..++++.
T Consensus 197 ---~~~di~v~s~sK~~~-~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~l~~ 269 (370)
T TIGR02539 197 ---IGADFIVGSGHKSMA-ASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMMASFPH---VVERVKR 269 (370)
T ss_pred ---cCCCEEEeeCccccc-CCCCEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHHHHHHH---HHHHHHH
Confidence 245578899999999 677899999999999988876544322 1122245555566653 2455655
Q ss_pred HHHHHHHHHHHHHHHhccCCCceee--cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 360 MVKAFRERRDFLVKSFGELEGVKMS--EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~~~~--~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
..+.++.. +++.+.|+++ |+++. .|..++|+++++|.... ...+ ...+...+.++|.++ ||.
T Consensus 270 ~~~~~~~~-~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~-~~~~--~~~~~~~~~~~L~e~-GI~ 333 (370)
T TIGR02539 270 WDEEVKKT-RWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHE-IAQK--HKRRGYFLYEELKKR-GIH 333 (370)
T ss_pred HHHHHHHH-HHHHHHHHhC-CcEEEccCCCcCceEEEECCchhH-Hhhh--hccccHHHHHHHHhC-CCc
Confidence 55555554 5899999998 88763 36667778898863200 0000 001345688887766 885
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=231.33 Aligned_cols=268 Identities=19% Similarity=0.159 Sum_probs=197.1
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEE
Q 014172 104 EPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183 (429)
Q Consensus 104 ~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vl 183 (429)
++++++|+.+.+++.+.... ...|++..+..++++.+++++ | ++++++++|+++++..++.+++++||+|+
T Consensus 5 ~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~~a~~~----g----~~~~~~~~~gt~a~~~~~~~l~~~gd~v~ 75 (338)
T cd06502 5 DTVTGPTPEMLEAMAAANVG-DDVYGEDPTTAKLEARAAELF----G----KEAALFVPSGTAANQLALAAHTQPGGSVI 75 (338)
T ss_pred ccCCCCCHHHHHHHHhcccC-CcccCCCHHHHHHHHHHHHHh----C----CCeEEEecCchHHHHHHHHHhcCCCCeEE
Confidence 34566788999999886532 346766666667777777765 3 45788888888999999999999999999
Q ss_pred EcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-------CCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 184 IPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 184 v~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-------~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
++.|+|..+.. .++..|++++.++.+ . +.+|+++|++++++ ++++|++++|+|| |.+++.+++++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l~~i 151 (338)
T cd06502 76 CHETAHIYTDEAGAPEFLSGVKLLPVPGE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDELKAI 151 (338)
T ss_pred EecCcceeeecCCcHHHHcCceEEeecCC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHHHHH
Confidence 99999876442 456689999999874 2 56899999999874 7899999999997 777799999999
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc--
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-- 331 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~-- 331 (429)
+++|++| |+++|+||+|..+....... ++..+.. +..+++.|+||.++++| .+++++++++++.+......+
T Consensus 152 ~~~~~~~-~~~livDea~~~~~~~~~~~-~~~~~~~--~~d~~~~s~sK~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
T cd06502 152 SALAKEN-GLPLHLDGARLANAAAALGV-ALKTYKS--GVDSVSFCLSKGGGAPV--GAVVVGNRDFIARARRRRKQAGG 225 (338)
T ss_pred HHHHHHc-CCeEeechHHHHHHHHhcCC-CHHHHHh--cCCEEEEeccccCCCcc--ceEEECCHHHHHHHHHHHHHhCC
Confidence 9999999 99999999986432111111 2222211 23366889999999887 234567889999887765433
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~ 397 (429)
....+.+.+.++..+|+. ..+ .+..+++.++++++.+.|+++ |+.+.++.+++ +.++++
T Consensus 226 ~~~~~~~~~~a~~~~L~~----~~~-~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~-~~v~~~ 284 (338)
T cd06502 226 GMRQSGFLAAAGLAALEN----DLW-LRRLRHDHEMARRLAEALEEL-GGLESEVQTNI-VLLDPV 284 (338)
T ss_pred ChhhHHHHHHHHHHHhcC----chH-HHHHHHHHHHHHHHHHHHHhc-CCCcccccCCe-EEEecC
Confidence 233566777777777764 233 345577788889999999988 66666666666 556654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-26 Score=229.00 Aligned_cols=295 Identities=18% Similarity=0.243 Sum_probs=215.6
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCC--CC-------CCCCHHHHHHHHHHHHhhcCCCCC-CCcEEEecC
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRY--TP-------NAGTLELRSAICHKLKEENGLSYT-PDQILVSNG 163 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y--~~-------~~G~~~lr~~ia~~l~~~~g~~~~-~~~i~~t~G 163 (429)
|++++.|+.|... ++|+.+.+++.+.+.....+. +. ..+..++|+.++++++ .+ +++|++|+|
T Consensus 16 ~~~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~------~~~~~~v~~~~g 88 (403)
T TIGR01979 16 GKPLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFIN------AASDEEIVFTRG 88 (403)
T ss_pred CCceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhC------cCCCCeEEEeCC
Confidence 5678999999877 467788899888765421110 00 0124477777877764 24 579999999
Q ss_pred hHHHHHHHHHHh----cCCCCEEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEc
Q 014172 164 AKQSILQAVLAV----CSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC 235 (429)
Q Consensus 164 ~~~al~~~l~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~ 235 (429)
+++++.+++.++ +++||+|+++++.|++. ...++..|++++.++.+ .++.+|++.+++.+++++++++++
T Consensus 89 ~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~--~~~~~~~~~l~~~i~~~~~lv~~~ 166 (403)
T TIGR01979 89 TTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLD--DDGTLDLDDLEKLLTEKTKLVAIT 166 (403)
T ss_pred HHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecC--CCCCCCHHHHHHHhccCCeEEEEE
Confidence 999999888875 57899999999988763 35566789999999986 345689999999999999999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE
Q 014172 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (429)
Q Consensus 236 ~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~ 315 (429)
+|+||||.+++ +++|.++|++| |+++|+|++|+.. ..+..+.. .+.++++.|++|.+|++| +||++
T Consensus 167 ~~~~~tG~~~~---~~~i~~~~~~~-~~~~ivD~a~~~g----~~~~~~~~----~~~d~~~~s~~K~~gp~G--~g~l~ 232 (403)
T TIGR01979 167 HVSNVLGTVNP---VEEIAKLAHQV-GAKVLVDGAQAVP----HMPVDVQA----LDCDFYVFSGHKMYGPTG--IGVLY 232 (403)
T ss_pred cccccccccCC---HHHHHHHHHHc-CCEEEEEchhhcC----ccccCccc----cCCCEEEEecccccCCCC--ceEEE
Confidence 99999999999 88999999999 9999999999752 22222222 356699999999988666 89999
Q ss_pred cCHHHHHHHHHHhh---------------------cccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHH
Q 014172 316 GPKHFVAACNKIQS---------------------QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 316 ~~~~~~~~l~~~~~---------------------~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~ 373 (429)
+++++++.+..... ....+++.....++..+++. ..+ ..+...++..+.++.+.+
T Consensus 233 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~---~~~~g~~~~~~~~~~l~~~l~~ 309 (403)
T TIGR01979 233 GKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDY---LEAIGLENIEAHEHELTAYALE 309 (403)
T ss_pred EchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHH
Confidence 99887766531100 01123445555666666653 122 356778888889999999
Q ss_pred HhccCCCceeecCC-----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 374 SFGELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 374 ~L~~l~g~~~~~p~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|++++|+++..|. +++ +.+.++.. +..++.+.| ++.||.+
T Consensus 310 ~l~~~~g~~~~~~~~~~~~~~~-v~~~~~~~------------~~~~~~~~L-~~~gI~v 355 (403)
T TIGR01979 310 RLGEIPGLRIYGPRDAEDRGGI-ISFNVEGV------------HPHDVGTIL-DEEGIAV 355 (403)
T ss_pred HHhcCCCEEEeCCCCccccCce-EEEEeCCc------------CHHHHHHHH-hhCCEEE
Confidence 99988889887654 455 55666642 566777655 5568876
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=228.66 Aligned_cols=294 Identities=14% Similarity=0.188 Sum_probs=214.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCC---------CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA---------GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~---------G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
+.|.|+.+-.. +.|+.+++++.+.+.....+..... -..++|+++++++ |. .++++|++|+|+++
T Consensus 23 ~~iYld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~----~~-~~~~~v~~t~g~t~ 96 (406)
T PRK09295 23 PLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI----NA-RSAEELVFVRGTTE 96 (406)
T ss_pred ceEEEeCcccc-cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc----Cc-CCCCeEEEeCCHHH
Confidence 57899887755 3577889998887764221110111 1346666677665 32 15689999999999
Q ss_pred HHHHHHHH----hcCCCCEEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 167 SILQAVLA----VCSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 167 al~~~l~~----l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
+++.++.+ ++++||+|+++++.|++ +...++..|++++.++++. ++.+|++.+++++++++++|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t~lv~l~~~~ 174 (406)
T PRK09295 97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPALFDERTRLLAITHVS 174 (406)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCCCHHHHHHhcCCCcEEEEEecch
Confidence 99988876 46899999999988865 3456677899999999864 35589999999999999999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
||||.++| +++|.++|+++ |+++++|++|... ..+..+.. .+..+++.|++|.+|.+| +||+++++
T Consensus 175 n~tG~~~~---~~~i~~~~~~~-~~~vivD~a~~~g----~~~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~~ 240 (406)
T PRK09295 175 NVLGTENP---LAEMIALAHQH-GAKVLVDGAQAVM----HHPVDVQA----LDCDFYVFSGHKLYGPTG--IGILYVKE 240 (406)
T ss_pred hcccccCC---HHHHHHHHHHc-CCEEEEEcccccC----ccccCchh----cCCCEEEeehhhccCCCC--cEEEEEch
Confidence 99999999 88999999999 9999999999753 22222222 345689999999888666 79999998
Q ss_pred HHHHHHHHHh----------------------hcccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHh
Q 014172 319 HFVAACNKIQ----------------------SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 319 ~~~~~l~~~~----------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L 375 (429)
++++.+.... +....+++..+..++.++++. ..+ .++...++.++.++++.+.|
T Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~---~~~~g~~~i~~~~~~l~~~l~~~l 317 (406)
T PRK09295 241 ALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDY---VSALGLNNIAEYEQNLMHYALSQL 317 (406)
T ss_pred HhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHH
Confidence 8776543110 011224566666677777764 122 35677788888999999999
Q ss_pred ccCCCceeecCC--ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 376 GELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 376 ~~l~g~~~~~p~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+++..|. .++ +.+.++.. +..++.+.| +++||.|
T Consensus 318 ~~~~~~~~~~~~~~~~i-v~~~~~~~------------~~~~~~~~L-~~~gI~v 358 (406)
T PRK09295 318 ESVPDLTLYGPQNRLGV-IAFNLGKH------------HAYDVGSFL-DNYGIAV 358 (406)
T ss_pred hcCCCEEEeCCCCCceE-EEEEECCc------------CHHHHHHHH-HhCCeEE
Confidence 998888887653 455 45566642 567777765 6679876
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=231.35 Aligned_cols=226 Identities=14% Similarity=0.202 Sum_probs=181.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~ 201 (429)
.+| +++....|++.||++.. .+++++++|+++++..++.+++++||.|+++.|+|..|...+ ...|+
T Consensus 78 ~R~-~~Pt~~~Le~~lA~leg--------~~~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi 148 (427)
T PRK07049 78 SRF-NHPNSEIVEDRLAVYEG--------AESAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV 148 (427)
T ss_pred cCC-CCcCHHHHHHHHHHHhC--------CCcEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence 456 45566899999999862 457888999999999999999999999999999999997654 56799
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcc-----cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh---CCCeEEEEccCCcc
Q 014172 202 TPVILPTRISENFLLDPKVLESKLT-----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK---HPRLLVLSDEIYEH 273 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~-----~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~---~~~i~vi~Deay~~ 273 (429)
+++.++. . .|++.+++.+. +++|+|++++|+||||.+++.+++.+|++.|+. + +++||+||+|..
T Consensus 149 ~~v~~~~---~---~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~-~~~vvvDety~~ 221 (427)
T PRK07049 149 GAVGFAD---G---LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGH-RPIIACDNTLLG 221 (427)
T ss_pred EEEEEeC---C---CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccC-CCEEEEECCccc
Confidence 8777762 1 46777776663 478999999999999999998888888877643 6 899999999875
Q ss_pred cccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCC
Q 014172 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~ 352 (429)
..+. .++ ..+..|++.||||.++ ++|+|+||+++++++++.+......++.+.+.+.+.++...|+.
T Consensus 222 ~~~~----~pl-----~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~r~L~t--- 289 (427)
T PRK07049 222 PVFQ----KPL-----EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLGRSLET--- 289 (427)
T ss_pred cccC----Ccc-----ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCh---
Confidence 4321 111 1245699999999998 69999999999999999999888878888899988877666642
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 353 ~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+....++..++++.+.+.|++.|+++.
T Consensus 290 ----l~~R~~~~~~~a~~la~~L~~~p~V~~ 316 (427)
T PRK07049 290 ----LVLRMERANRNARAVAEFLRDHPKVEK 316 (427)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCccE
Confidence 455566778899999999999887653
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=229.21 Aligned_cols=294 Identities=19% Similarity=0.210 Sum_probs=210.0
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---C--C-CCC-CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---F--T-RYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~---~--~-~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|..+++++.++ -++...|++++++.+++.+. . . .|. ......+|++.+++++ | .+.+++++|+
T Consensus 52 ~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~----g----~~~~~~~~sG 123 (407)
T PRK07179 52 PGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFT----G----FESCLLCQSG 123 (407)
T ss_pred CCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHh----C----CCcEEEECCH
Confidence 566789998876 77777899999999988642 1 1 111 1112345666666654 4 2467889999
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccC
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 243 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~ 243 (429)
++++..++++++.+||.|+++.+.|.+....++..|++++.++. .|++.+++++++ ++++|++++++||||.
T Consensus 124 ~~An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~n~tG~ 196 (407)
T PRK07179 124 WAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVYSTTGT 196 (407)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCc
Confidence 99999999999999999999999999888888889998877653 489999999876 5788889999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
+++ +++|.++|++| |+++|+||+|....++......+..++.....++++.|+||.+| .|+||+++++++++.
T Consensus 197 i~p---l~~I~~l~~~~-~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g---~~~G~l~~~~~~~~~ 269 (407)
T PRK07179 197 IAP---LADIVDIAEEF-GCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFA---GRAGIITCPRELAEY 269 (407)
T ss_pred ccc---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhh---ccCeEEEeCHHHHHH
Confidence 999 88999999999 99999999998654433222222222211223588999999996 368999999998887
Q ss_pred HHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC
Q 014172 324 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (429)
Q Consensus 324 l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~ 401 (429)
+...... +..+.+.....++.++++. .+.....+++++++++++.+.|+++ |+++. +.+ .++++.++..
T Consensus 270 ~~~~~~~~~~~~t~~~~~~aa~~aal~~----~~~~~~~~~~l~~~~~~l~~~L~~~-g~~v~-~~~-~i~~l~~~~~-- 340 (407)
T PRK07179 270 VPFVSYPAIFSSTLLPHEIAGLEATLEV----IESADDRRARLHANARFLREGLSEL-GYNIR-SES-QIIALETGSE-- 340 (407)
T ss_pred HHHhCcCeeeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCC-CEEEEEeCCH--
Confidence 7654332 2222233333334455553 2223467788999999999999988 88765 444 4467776531
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCee
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.+...+.+.|.++ ||.
T Consensus 341 ---------~~~~~~~~~L~~~-GI~ 356 (407)
T PRK07179 341 ---------RNTEVLRDALEER-NVF 356 (407)
T ss_pred ---------HHHHHHHHHHHHC-Cce
Confidence 1345666676654 886
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=229.44 Aligned_cols=300 Identities=17% Similarity=0.181 Sum_probs=210.5
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
|+++++|+.++ ..+..+|++++++.+++++.....+ ...|..+....+++.+.+..| .+ ..++++++++++.
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g---~~-~~l~~~sG~~an~ 119 (402)
T TIGR01821 44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHG---KE-SALVFTSGYVAND 119 (402)
T ss_pred CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhC---CC-eEEEECchHHHHH
Confidence 36789998887 8888899999999999875222110 012333333444444444444 23 4555555677888
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc---c-CCcEEEEcCCCCCccC
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---E-KSRLLILCSPSNPTGS 243 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~---~-~~~~i~l~~p~NPtG~ 243 (429)
.++..+.. +|+.|+.....|......++..|+++..++. .|++++++.++ + ++++|++++|+||+|.
T Consensus 120 ~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~ 192 (402)
T TIGR01821 120 ATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFESVYSMDGD 192 (402)
T ss_pred HHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCC
Confidence 88888765 6787877767777777778888988766653 26677776664 2 5789999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
+.+ +++|.++|++| |+++|+||+|....++...........-..+.+++++||||.+|++| ||+++++++++.
T Consensus 193 ~~~---l~~i~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G---G~i~~~~~~~~~ 265 (402)
T TIGR01821 193 IAP---IEEICDLADKY-GALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG---GYIAASRKLIDA 265 (402)
T ss_pred ccC---HHHHHHHHHHc-CCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC---ceeecCHHHHHH
Confidence 999 89999999999 99999999999555543221111111111234688999999999888 999999999998
Q ss_pred HHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC
Q 014172 324 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (429)
Q Consensus 324 l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~ 401 (429)
+...... ++.+.+...+.++.++|+. .++. ...++.++++++++.+.|+++ |+++.++.+++ +++.++..
T Consensus 266 l~~~~~~~~~t~~~~~~~~aaa~aaL~~---~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-~~i~~~~~-- 337 (402)
T TIGR01821 266 IRSYAPGFIFTTSLPPAIAAGATASIRH---LKES-QDLRRAHQENVKRLKNLLEAL-GIPVIPNPSHI-VPVIIGDA-- 337 (402)
T ss_pred HHHhCcCceecCcCCHHHHHHHHHHHHH---hhcC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEeCCH--
Confidence 8765443 2345677778888888875 2222 455666778999999999988 88877777665 55665421
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
....+++++|++++||.+
T Consensus 338 ---------~~a~~~~~~L~~~~Gi~v 355 (402)
T TIGR01821 338 ---------ALCKKVSDLLLNKHGIYV 355 (402)
T ss_pred ---------HHHHHHHHHHHhcCCEEE
Confidence 135789999988779876
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-26 Score=229.70 Aligned_cols=299 Identities=19% Similarity=0.227 Sum_probs=214.5
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC--CC-------CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT--PN-------AGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~--~~-------~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
|.+.|.|+.+... ++|+.+.+++.+.+.+...+.. .. ....++|+.++++++ .+ ++++|++|+|+
T Consensus 30 ~~~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~----~~-~~~~v~~t~g~ 103 (424)
T PLN02855 30 GSKLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN----AS-TSREIVFTRNA 103 (424)
T ss_pred CCCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC----CC-CCCEEEEeCCH
Confidence 3468999998876 5678899998887654211110 00 112467777777764 21 35799999999
Q ss_pred HHHHHHHHHH----hcCCCCEEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 165 KQSILQAVLA----VCSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 165 ~~al~~~l~~----l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
++++..+++. .+++||+|+++.+.|++ +...++..|++++.++++.+ +.+|++.+++.+++++++|++++
T Consensus 104 t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~~t~lv~i~~ 181 (424)
T PLN02855 104 TEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD--EVLDVEQLKELLSEKTKLVATHH 181 (424)
T ss_pred HHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC--CCcCHHHHHHHhccCceEEEEeC
Confidence 9999998876 36899999999998875 44556778999999998643 34899999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
++||||.++| +++|+++|+++ |+++|+|++|.. +..+..+.. .+..+++.|++|.+|.+| +||+++
T Consensus 182 ~~n~tG~~~~---~~~I~~l~~~~-g~~vivD~a~~~----g~~~~~~~~----~~~d~~~~s~~K~~gp~G--~G~l~~ 247 (424)
T PLN02855 182 VSNVLGSILP---VEDIVHWAHAV-GAKVLVDACQSV----PHMPVDVQT----LGADFLVASSHKMCGPTG--IGFLWG 247 (424)
T ss_pred ccccccccCC---HHHHHHHHHHc-CCEEEEEhhhhc----CCcCCCchh----cCCCEEEeecccccCCCc--cEEEEE
Confidence 9999999999 88999999999 999999999964 222222222 344588999999877555 899999
Q ss_pred CHHHHHHHHHHh--------------------hcccCC-CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 014172 317 PKHFVAACNKIQ--------------------SQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 317 ~~~~~~~l~~~~--------------------~~~~~~-~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (429)
++++++.+.... ..+..+ ++.....++.++++.- .+..+++..++.++.++.+.+.|
T Consensus 248 ~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~L 325 (424)
T PLN02855 248 KSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYL--SEIGMDRIHEYEVELGTYLYEKL 325 (424)
T ss_pred chhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChHHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHH
Confidence 988877653221 011222 3333344444555420 12356777888888999999999
Q ss_pred ccCCCceeecCCc------eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 376 GELEGVKMSEPQG------AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 376 ~~l~g~~~~~p~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+++..+.. +.++.+.+++. +..++.+.|.+++||.+
T Consensus 326 ~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~------------~~~~v~~~L~~~~gI~v 372 (424)
T PLN02855 326 SSVPGVRIYGPKPSEGVGRAALCAFNVEGI------------HPTDLSTFLDQQHGVAI 372 (424)
T ss_pred hcCCCEEEeCCCcccccCcccEEEEEECCc------------CHHHHHHHhcccCCEEE
Confidence 9988988874321 23466777642 56788888877668865
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-26 Score=226.82 Aligned_cols=295 Identities=20% Similarity=0.231 Sum_probs=208.6
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCC-------CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTR-------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~-------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
|+++++|+.++ ..++.+|++.+++.+.+.+.... |++.....+|++.++++ +| .++.+++++| .
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~----~g---~~~~~~~~sG-~ 116 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADL----HG---KEAALVFTSG-Y 116 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHH----hC---CCcEEEECcH-H
Confidence 46789998887 78888899999999988653221 22222234455555554 44 2445555555 4
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc----cCCcEEEEcCCCC
Q 014172 166 QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSN 239 (429)
Q Consensus 166 ~al~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~----~~~~~i~l~~p~N 239 (429)
++...++..++. +++.|+.....|.+....++..|+++..++. .|++.+++.++ +++++|++++++|
T Consensus 117 ~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~v~s 189 (407)
T PRK09064 117 VSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFESVYS 189 (407)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeCCCC
Confidence 566656776654 7777777777777777778888888766653 26777777764 4678999999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC-CCCceEEEeccChhcccccceeeEEEcCH
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
|+|.+.+ +++|.++|++| |+++|+||+|....|+.... .+....+ ..+.+++++||||.||++| ||+++++
T Consensus 190 ~~G~~~~---l~~i~~l~~~~-~~~livDEa~~~G~~g~~g~-g~~~~~~~~~~~div~~t~sKa~g~~G---G~~~~~~ 261 (407)
T PRK09064 190 MDGDIAP---IAEICDLADKY-NALTYLDEVHAVGMYGPRGG-GIAERDGLMDRIDIIEGTLAKAFGVMG---GYIAGSA 261 (407)
T ss_pred CCccccC---HHHHHHHHHHc-CCEEEEECCCcccccCCCCC-ChHHhcCCCCCCeEEEEecchhhhccC---ceEecCH
Confidence 9999999 99999999999 99999999998544543221 1222211 1234788999999999888 9999999
Q ss_pred HHHHHHHHHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEec
Q 014172 319 HFVAACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 319 ~~~~~l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l 396 (429)
++++.+......+ +.+.+...+.++.++++. .++ ....+++++++++++.+.|+++ |+++..+.+++ +++.+
T Consensus 262 ~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~---~~~-~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-v~i~~ 335 (407)
T PRK09064 262 ALVDAVRSYAPGFIFTTSLPPAIAAAALASIRH---LKE-SNEERERHQERAAKLKAALDAA-GIPVMPNESHI-VPVMV 335 (407)
T ss_pred HHHHHHHHhCccccccCcCCHHHHHHHHHHHHH---Hhc-CHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCCCE-EEEEe
Confidence 9998887654433 334566677777777764 122 2345678889999999999987 88777666554 66766
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.. ....+++++|+++.||.|
T Consensus 336 ~~~-----------~~~~~l~~~L~~~~gi~v 356 (407)
T PRK09064 336 GDP-----------EKCKKASDMLLEEHGIYV 356 (407)
T ss_pred CCH-----------HHHHHHHHHHHHhCCEEE
Confidence 431 146789999988779876
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=225.35 Aligned_cols=299 Identities=17% Similarity=0.144 Sum_probs=207.4
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC----CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.+.|+.+-+.. +|+.+++++.+.+.... ..|....+..++.+.+.+.+.+.+| .++++|++++|+++++..++
T Consensus 18 ~~yl~~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~--~~~~~v~~~~~~t~~l~~~~ 94 (397)
T TIGR01976 18 RVFFDNPAGTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLN--ADPPEVVFGANATSLTFLLS 94 (397)
T ss_pred eEEecCCccCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcC--CCCCeEEEeCCHHHHHHHHH
Confidence 68888777663 57888999988875422 1243333333333444444444445 34557999999999998777
Q ss_pred HHh---cCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 173 LAV---CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 173 ~~l---~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
.++ +++||+|++++|.|.+.. ..++..|++++.++++.+ ++.+|++++++.+++++++|++++|+||||.++
T Consensus 95 ~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~ 173 (397)
T TIGR01976 95 RAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSPRTRLVAVTAASNTLGSIV 173 (397)
T ss_pred HHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCCCceEEEEeCCCCCCCccC
Confidence 775 689999999999887643 456778999999998643 366899999999998999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
+ +++|.++|++| |+++|+|+++.. +.....+.. .+..+++.|++|.+| +|+||+++++++++.+.
T Consensus 174 ~---~~~i~~~~~~~-~~~~ivD~a~~~----~~~~~~~~~----~~~d~~~~s~~K~~g---~~~G~l~~~~~~~~~l~ 238 (397)
T TIGR01976 174 D---LAAITELVHAA-GALVVVDAVHYA----PHGLIDVQA----TGADFLTCSAYKFFG---PHMGILWGRPELLMNLP 238 (397)
T ss_pred C---HHHHHHHHHHc-CCEEEEehhhhc----cccCCCHHH----cCCCEEEEechhhcC---CceEEEEEcHHHHhhCC
Confidence 9 99999999999 999999999753 222222221 345577899999875 57999999999887765
Q ss_pred HHhhccc----------CCCchHHHH---HHHHHHhcCCCC---------hHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 326 KIQSQFT----------SGASSISQK---AGVAALGLGYAG---------GEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 326 ~~~~~~~----------~~~~~~~q~---aa~~~l~~~~~~---------~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
.....+. .+++..... ++...+...... .+++++..++..+.++++.+.|++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~ 318 (397)
T TIGR01976 239 PYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTL 318 (397)
T ss_pred CccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4322111 112222222 333333221000 012566677778888999999998867888
Q ss_pred ecC-----CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+ .++ ++.+.+++. +..++.++|.++ ||.|
T Consensus 319 ~~~~~~~~~~~-~~~~~~~~~------------~~~~l~~~L~~~-gI~v 354 (397)
T TIGR01976 319 YGVARLAARVP-TVSFTVHGL------------PPQRVVRRLADQ-GIDA 354 (397)
T ss_pred eCCCCccCCCc-eEEEEeCCc------------CHHHHHHHHHHC-CeEE
Confidence 654 444 466666532 577899988665 8876
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-26 Score=228.66 Aligned_cols=304 Identities=20% Similarity=0.280 Sum_probs=215.9
Q ss_pred HHHHHHHHHHhcC----CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCC--CCHHHHHHHH---HHHHhhcCCC
Q 014172 82 AITDQATALAQAG----VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA--GTLELRSAIC---HKLKEENGLS 152 (429)
Q Consensus 82 ~~~~~~~~~~~~g----~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~--G~~~lr~~ia---~~l~~~~g~~ 152 (429)
++.+...++.... ...+.|+.|.+++.+|..+.+..... .....|.+.. -...++++++ +++.+.+|.
T Consensus 51 ~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~--~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~- 127 (447)
T PRK00451 51 ELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRS--EFYTAYTPYQPEISQGTLQAIFEYQTMICELTGM- 127 (447)
T ss_pred HHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhch--hHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCC-
Confidence 4444444444322 15788999999988887776665443 2223455511 1234666666 455777784
Q ss_pred CCCCcEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCCCChHHHHHH----cCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 153 YTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 153 ~~~~~i~~t~G~~~al~~~l~~l~-~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
+++++++|+|+++++..++.++. .+||+|+++++.|+.+...++. .|++++.+++++ + .+|++++++++++
T Consensus 128 -~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~ 203 (447)
T PRK00451 128 -DVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDD 203 (447)
T ss_pred -CcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCC
Confidence 55689999999999998888874 7999999999999998877664 699999999864 3 6899999999999
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEE--ccCCcccccCCCCCCccccCCCCCCceEEEe---ccCh
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS--DEIYEHIIYAPATHTSFASLPGMWERTLTVN---GFSK 302 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~--Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~---S~SK 302 (429)
++++|++++| ||||.+.+ +++|.++|+++ |+++++ |..... ... .+...+.+++++ +|||
T Consensus 204 ~t~~v~l~~p-n~tG~v~~---l~~I~~~a~~~-~~~~iv~~d~~~~g-----~~~-----~~~~~~~D~~~~s~~k~~~ 268 (447)
T PRK00451 204 DTAAVVVQYP-NFFGVIED---LEEIAEIAHAG-GALFIVGVDPVSLG-----LLK-----PPGEYGADIVVGEGQPLGI 268 (447)
T ss_pred CeEEEEEECC-CCCCeeCC---HHHHHHHHHHC-CCEEEEEcChHHhc-----cCC-----CcccCCCCEEEECCCcCCC
Confidence 9999999999 89999988 99999999999 999887 433211 100 112245556666 7888
Q ss_pred hcccccceeeEEEcCHHHHHHH----------------------------HHHhhcccCCCchHHH-HHHHHHHhcCCCC
Q 014172 303 AFAMTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQ-KAGVAALGLGYAG 353 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q-~aa~~~l~~~~~~ 353 (429)
.++++|+|+||+++++++++.+ +......+.+.+...+ .++..++... .
T Consensus 269 ~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~--~ 346 (447)
T PRK00451 269 PLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYMSLL--G 346 (447)
T ss_pred CCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHHHHH--C
Confidence 8888999999999999888773 1111122222333333 3333334321 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEE--EecCCccCCcccCCCCCCChHHHHHHHHHhC
Q 014172 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424 (429)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 424 (429)
+++++++.+++.++++++.++|++++|+++. ++++|.+ ++++ .+..+++++|++++
T Consensus 347 ~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~~~~~~~v~~~-------------~~~~~~~~~L~~~g 404 (447)
T PRK00451 347 PEGLRELAEQNHQKAHYLAERLAEIGGVELF--DGPFFNEFVVRLP-------------KPAEEVNEALLEKG 404 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCEEec--CCCeEEEEEEecC-------------CCHHHHHHHHHhcC
Confidence 5778999999999999999999998788875 4556655 4443 15689999998873
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=227.79 Aligned_cols=222 Identities=21% Similarity=0.279 Sum_probs=179.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH-----HHcCCEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIADATPV 204 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~-----~~~g~~~~ 204 (429)
+++...+|++.+|+++ ..+.+++++|+++++..++.+++++||+|+++.|.|..+...+ +..|++++
T Consensus 74 ~~Pt~~~LE~~lA~l~--------g~~~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~ 145 (418)
T PLN02242 74 FNPTVLNLGRQMAALE--------GTEAAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTT 145 (418)
T ss_pred CChhHHHHHHHHHHHh--------CCCeEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEE
Confidence 3455677888888875 2356789999999999999999999999999999998887654 35788887
Q ss_pred EecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCc
Q 014172 205 ILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283 (429)
Q Consensus 205 ~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~ 283 (429)
.++. .|++.+++++++ ++|+|++++|+||||.+++ +++|+++|++| +++||+|++|..+.+..
T Consensus 146 ~~d~-------~d~e~l~~~i~~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-gi~livDea~~~~~~~~----- 209 (418)
T PLN02242 146 FVDI-------TDLEAVKKAVVPGKTKVLYFESISNPTLTVAD---IPELARIAHEK-GVTVVVDNTFAPMVLSP----- 209 (418)
T ss_pred EcCC-------CCHHHHHHhcCcCCCEEEEEecCCCCCCcccC---HHHHHHHHHHh-CCEEEEECCCCccCCCH-----
Confidence 7764 289999999988 5999999999999999998 89999999999 99999999998765421
Q ss_pred cccCCCCCCceEEEeccChhcccccce-eeEEEcCHHHHHHHHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHH
Q 014172 284 FASLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKM 360 (429)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~~~~G~R-~G~v~~~~~~~~~l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~ 360 (429)
.. .+.+|++.||||.++++|++ .||+++++++++.+...... ...+.....|.+...++.. ..+..+
T Consensus 210 -~~----~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l-----~tl~~r 279 (418)
T PLN02242 210 -AR----LGADVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERL-----PHLSLR 279 (418)
T ss_pred -HH----cCCcEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCC-----CcHHHH
Confidence 11 24569999999999989988 59999999999988876442 3445666677777766653 255667
Q ss_pred HHHHHHHHHHHHHHhccCCCceeecC
Q 014172 361 VKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 361 ~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+++++++++.+.+.|+++ ++++..|
T Consensus 280 ~~~~~~~a~~la~~L~~~-~~~V~yP 304 (418)
T PLN02242 280 MKEHCRRAMEYAKRMKEL-GLKVIYP 304 (418)
T ss_pred HHHHHHHHHHHHHHHHhC-CCEEECC
Confidence 789999999999999998 5666533
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=222.45 Aligned_cols=305 Identities=15% Similarity=0.162 Sum_probs=211.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|. ..++. +|.+.+++.+++.+... .+. ....+....+++.+.+.. ..++|++++|+++++.
T Consensus 29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~-~~~-~~~~~~~~~la~~l~~~~----~~~~v~~~~sGseA~~ 102 (389)
T PRK01278 29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWH-VSN-LYRIPEQERLAERLVENS----FADKVFFTNSGAEAVE 102 (389)
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCc-ccc-ccCChHHHHHHHHHHhhC----CCCEEEEcCCcHHHHH
Confidence 577899998875 23333 78999999998875221 111 122345556666665543 2468999999999999
Q ss_pred HHHHHh----cCCCC----EEEEcCCCCCChHHHHHHcCCEEEEecCC-C-CCCCC----CCHHHHHhhcccCCcEEEEc
Q 014172 170 QAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADATPVILPTR-I-SENFL----LDPKVLESKLTEKSRLLILC 235 (429)
Q Consensus 170 ~~l~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~-~~~~~----~d~e~l~~~l~~~~~~i~l~ 235 (429)
.++++. .++|| +|++.+++|+++...+...+......... + ..++. .|++.+++.+++++++|+++
T Consensus 103 ~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~avive 182 (389)
T PRK01278 103 CAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNTAAILIE 182 (389)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCeEEEEEe
Confidence 998876 45676 89999999999887776665543332110 0 11222 58999999998889999998
Q ss_pred CCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEE
Q 014172 236 SPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314 (429)
Q Consensus 236 ~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v 314 (429)
.++||+| .+++.+.+++|.++|++| |+++|+||+|.++.+.+... ..... +.. .-+.||||.++ +|+|+||+
T Consensus 183 p~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~~-~~~~~-~~~---pdi~t~sK~l~-~G~~ig~~ 255 (389)
T PRK01278 183 PIQGEGGIRPAPDEFLKGLRQLCDEN-GLLLIFDEVQCGMGRTGKLF-AHEWA-GVT---PDIMAVAKGIG-GGFPLGAC 255 (389)
T ss_pred cccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCcce-eeccc-CCC---CCEEEEehhcc-CCcceEEE
Confidence 8889999 788999999999999999 99999999999876554311 11111 111 11568999999 99999999
Q ss_pred EcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHHHHHHhccCCC-ceeecCCceEE
Q 014172 315 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA--GGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSEPQGAFY 391 (429)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~--~~~~~~~~~~~~~~~r~~l~~~L~~l~g-~~~~~p~~~~~ 391 (429)
++++++++.+.......+++.+.+.|.++.++|+.-.. ..+++.++.+.++++++.+.+ ..++ +..+.+ .|++
T Consensus 256 ~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~l~~l~~---~~~~~~~~v~g-~G~~ 331 (389)
T PRK01278 256 LATEEAAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVD---RFPDVIEEVRG-KGLL 331 (389)
T ss_pred EEcHHHHhccCCCCCCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh---hCCCceeeEec-ccEE
Confidence 99999988887666667778899999999888864100 012233344444444443322 2332 333445 4566
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++++. ++.+|+++|+++ ||.+
T Consensus 332 ~~i~~~~-------------~~~~~~~~l~~~-GV~~ 354 (389)
T PRK01278 332 LGLKCVV-------------PNRDLVQALRDE-GLLT 354 (389)
T ss_pred EEEEEec-------------CHHHHHHHHHHC-CeEE
Confidence 7787742 578999999988 8875
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-26 Score=225.25 Aligned_cols=245 Identities=14% Similarity=0.199 Sum_probs=182.1
Q ss_pred CCCCCCChHHHHHHHHHH-----H-HcCCCCCC--CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 103 GEPDFDTPVLIAEAGINA-----I-REGFTRYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 103 g~~~~~~p~~v~~a~~~~-----~-~~~~~~Y~--~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
..|.++++..+.++..+. . ..++ .|+ ++++..+|+++++++++ .+++++++|+++++..++.+
T Consensus 28 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~r~~~p~~~~Le~~iA~~~g--------~~~~l~~~sG~~Ai~~al~~ 98 (400)
T PRK06234 28 ATPIYQTSTFIFDSAEQGGRRFAGEESGY-IYSRLGNPTSTEVENKLALLEG--------GEAAVVAASGMGAISSSLWS 98 (400)
T ss_pred cCCcccccceecCChHHHHHhhccCcCCC-cccCCCCccHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHH
Confidence 345666655544444331 1 1222 255 77888999999999974 24678999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
++++||+|+++.|.|..+.. .++..|++++.++.. |++++++++++++++|++++|+||||.+.+ +
T Consensus 99 ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-------d~e~l~~~i~~~tklI~iesP~NPtG~v~d---l 168 (400)
T PRK06234 99 ALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS-------NLEEVRNALKANTKVVYLETPANPTLKVTD---I 168 (400)
T ss_pred HhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC-------CHHHHHHHhccCCeEEEEECCCCCCCCcCC---H
Confidence 99999999999999987654 347789999999752 899999999999999999999999999999 8
Q ss_pred HHHHHHHHhC-CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee-eEEEcCHHHHHHHHHH-
Q 014172 251 DEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKI- 327 (429)
Q Consensus 251 ~~I~~~a~~~-~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~~l~~~- 327 (429)
++|.++|+++ +++++|+|++|....+.. ++ . .+..+++.|+||.++++|+|+ ||+++++++++.++..
T Consensus 169 ~~I~~la~~~~~~i~livDea~~~~~~~~----~l-~----~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~ 239 (400)
T PRK06234 169 KAISNIAHENNKECLVFVDNTFCTPYIQR----PL-Q----LGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFG 239 (400)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCchhcCC----ch-h----hCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHH
Confidence 8999999985 279999999998754321 11 1 245699999999999899876 9999999988887643
Q ss_pred -hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 328 -QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 328 -~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
....+.+.+.+....+...|+. +..+.++..++...+.+.|++.|.+.
T Consensus 240 ~~~~~g~~l~p~~a~l~~~~l~t-------l~~r~~~~~~na~~~a~~L~~~~~V~ 288 (400)
T PRK06234 240 IKDMTGSVIGPFEAFLIIRGMKT-------LQIRMEKHCKNAMKVAKFLESHPAVE 288 (400)
T ss_pred HHHhcCCCCCHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 2234455566655544444432 34455555667777888888765553
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=225.07 Aligned_cols=296 Identities=15% Similarity=0.112 Sum_probs=212.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCC---CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
.|++.||+..|. +.++. ++.+.+++.+++++.. ..|... ...++++++.+.+|.. .+++|++++|+++
T Consensus 41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~-----~~~~la~~l~~~~~~~-~~~~v~~~~sgse 114 (398)
T PRK03244 41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATE-----PQIALAERLVELLGAP-EGGRVFFCNSGAE 114 (398)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCH-----HHHHHHHHHHHhCCCC-CCCEEEEeCchHH
Confidence 578899999875 45555 7899999999887521 235322 2245666666555532 3579999999999
Q ss_pred HHHHHHHHhcCCC-CEEEEcCCCCCChHHHHHH-cCCE------------EEEecCCCCCCCCCCHHHHHhhcccCCcEE
Q 014172 167 SILQAVLAVCSPG-DEVIIPAPFWVSYPEMARI-ADAT------------PVILPTRISENFLLDPKVLESKLTEKSRLL 232 (429)
Q Consensus 167 al~~~l~~l~~~g-d~Vlv~~p~y~~~~~~~~~-~g~~------------~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i 232 (429)
++..+++....+| +.|+..+++|+++...+.. .|.. ++.+|. .|++.+++.+.+++++|
T Consensus 115 a~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~~~av 187 (398)
T PRK03244 115 ANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDDDTAAV 187 (398)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcCCeEEE
Confidence 9999999877676 5677778899887654432 2221 222221 27899999987788999
Q ss_pred EEcCCCCCccCCCCHHH-HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee
Q 014172 233 ILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (429)
Q Consensus 233 ~l~~p~NPtG~~~~~~~-l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~ 311 (429)
+++.++||+|.+++.++ +++|.++|++| |+++|+||+|.++.+.|... .+. ..+.... +.+|||.++ +|+|+
T Consensus 188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~~-~~~-~~~~~pD---i~t~sK~l~-~G~~i 260 (398)
T PRK03244 188 FLEPIQGEAGVVPPPAGYLAAAREITDRH-GALLVLDEVQTGIGRTGAWF-AHQ-HDGVTPD---VVTLAKGLG-GGLPI 260 (398)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCcccchHH-hhh-hhCCCCC---EEEEchhhh-CCccc
Confidence 99999999999997765 99999999999 99999999998865544311 111 1111112 458899999 99999
Q ss_pred eEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc---eeecCCc
Q 014172 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV---KMSEPQG 388 (429)
Q Consensus 312 G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~---~~~~p~~ 388 (429)
||+++++++++.+.......+++.+.+++.++.++|+. ..+ .+..++.+++++++.+.|+++ +. ..+. ..
T Consensus 261 g~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~---~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v~-g~ 333 (398)
T PRK03244 261 GACLAFGPAADLLTPGLHGSTFGGNPVACAAALAVLDT---IAS--EGLLENAERLGEQLRAGIEAL-GHPLVDHVR-GR 333 (398)
T ss_pred EEEEEcHHHHhhccCCCCcCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHhc-CCCceeeEe-ec
Confidence 99999999988876544555667889999999999874 111 245566777788888888875 32 2222 35
Q ss_pred eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++|+.++.. ...+++++|+++ ||.+
T Consensus 334 g~~~~i~~~~~------------~~~~~~~~l~~~-Gv~~ 360 (398)
T PRK03244 334 GLLLGIVLTAP------------VAKAVEAAAREA-GFLV 360 (398)
T ss_pred cEEEEEEEecc------------HHHHHHHHHHHC-CeEE
Confidence 67799998631 467889988876 8876
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-25 Score=216.96 Aligned_cols=287 Identities=18% Similarity=0.190 Sum_probs=206.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC
Q 014172 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~ 186 (429)
.+.|+.+.+++.+.+.. ..| + +..++.+.+.+.+.+.+|.+ .++.+++++|+++++..++.+++.+||+|+++.
T Consensus 8 ~~~~~~v~~a~~~~~~~--~~~-~--~~~~~~~~~~~~la~~~g~~-~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~ 81 (356)
T cd06451 8 SNVPPRVLKAMNRPMLG--HRS-P--EFLALMDEILEGLRYVFQTE-NGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGV 81 (356)
T ss_pred cCCCHHHHHHhCCCccC--CCC-H--HHHHHHHHHHHHHHHHhcCC-CCCEEEEecCcHHHHHHHHHHhCCCCCEEEEec
Confidence 34578888888654321 222 2 23455556666666666641 234578888899999999999999999999999
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCe
Q 014172 187 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263 (429)
Q Consensus 187 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i 263 (429)
++|.+ +...++..|++++.+|.++ ++.+|++++++.+++ ++++|++++|+||||.+++ +++|.++|+++ |+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~---~~~i~~~a~~~-~~ 155 (356)
T cd06451 82 NGVFGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNP---LEGIGALAKKH-DA 155 (356)
T ss_pred CCchhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhccCCCEEEEeccCCCcccccC---HHHHHHHHHhc-CC
Confidence 88765 5677888999999999864 356899999999987 8999999999999999999 88899999999 99
Q ss_pred EEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH---Hhh-----------
Q 014172 264 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK---IQS----------- 329 (429)
Q Consensus 264 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~---~~~----------- 329 (429)
++++|++|.. |..+.++.. .+..+++.|.+|+++. +.++||++.++++++.+.. ...
T Consensus 156 ~li~D~~~~~----g~~~~~~~~----~~~d~~~~s~~K~l~~-p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (356)
T cd06451 156 LLIVDAVSSL----GGEPFRMDE----WGVDVAYTGSQKALGA-PPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKY 226 (356)
T ss_pred EEEEeeehhc----cCccccccc----cCccEEEecCchhccC-CCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhh
Confidence 9999999864 222222222 2334778899999984 3468999999998877653 000
Q ss_pred -----cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC---ceEEEEEecCCccC
Q 014172 330 -----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYG 401 (429)
Q Consensus 330 -----~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~---~~~~~~~~l~~~~~ 401 (429)
....+++...+.++.++++.- ....++...++++++++++.+.|.++ |+++..+. +++++|+.++..
T Consensus 227 ~~~~~~~~~t~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-- 301 (356)
T cd06451 227 WGEGYSYPHTPPVNLLYALREALDLI--LEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEG-- 301 (356)
T ss_pred hcccCCCCCCChHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCC--
Confidence 112223444455555665431 13446778888899999999999987 87775322 455567777642
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|.+++||.+
T Consensus 302 ---------~~~~~~~~~L~~~~gI~~ 319 (356)
T cd06451 302 ---------VDGDEVVRRLMKRYNIEI 319 (356)
T ss_pred ---------CCHHHHHHHHHHhCCEEE
Confidence 367899999988778865
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=217.77 Aligned_cols=234 Identities=17% Similarity=0.217 Sum_probs=179.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~ 201 (429)
.+| +++...+|++.++++.+ .+..++++|+++++..++ .++++||+|++++|.|++.. ..++..|+
T Consensus 47 ~r~-~~pt~~~le~~la~l~g--------~~~~~~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~ 116 (366)
T PRK08247 47 SRT-GNPTRGVLEQAIADLEG--------GDQGFACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV 116 (366)
T ss_pred cCC-CCchHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence 344 44556788888888863 233577888899999765 67899999999999999743 44556899
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~ 281 (429)
+++.++. .|++.+++++++++++|++++|+||+|.+.+ +++|+++|++| ++++|+|++|....+.
T Consensus 117 ~v~~vd~-------~d~~~l~~~i~~~tklv~le~P~NP~~~~~d---l~~I~~la~~~-g~~lIvD~t~~~~~~~---- 181 (366)
T PRK08247 117 RFVYVNT-------ASLKAIEQAITPNTKAIFIETPTNPLMQETD---IAAIAKIAKKH-GLLLIVDNTFYTPVLQ---- 181 (366)
T ss_pred eEEEECC-------CCHHHHHHhcccCceEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCCcccccc----
Confidence 9999875 3899999999999999999999999876555 99999999999 9999999999642211
Q ss_pred CccccCCCCCCceEEEeccChhccc-ccceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~~-~G~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
.++ ..+.++++.|+||.++- .+.+.||++++ +++++.+...+...+.+.+.+.+.++...|+. +..
T Consensus 182 ~p~-----~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~t-------l~~ 249 (366)
T PRK08247 182 RPL-----EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKT-------LAL 249 (366)
T ss_pred Cch-----hcCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCc-------HHH
Confidence 111 13566999999999963 34689999987 67888887776666666777777766665542 445
Q ss_pred HHHHHHHHHHHHHHHhccCCCce-eecC-CceEEEEEecC
Q 014172 360 MVKAFRERRDFLVKSFGELEGVK-MSEP-QGAFYLFIDFS 397 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~~-~~~p-~~~~~~~~~l~ 397 (429)
..++++++++.+.+.|++.|++. +..| .||+|.| .+.
T Consensus 250 r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf-~~~ 288 (366)
T PRK08247 250 RMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSF-RLQ 288 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEE-EEC
Confidence 66677999999999999998876 4344 8999887 553
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-25 Score=217.75 Aligned_cols=303 Identities=15% Similarity=0.129 Sum_probs=210.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCC------C--CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFT------R--YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~------~--Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
..|+|.--.-.-++++.+++++.+....... . +...+...++++.+|+++ | .+++++++|++++
T Consensus 19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~----g----~~~~~~~~g~t~a 90 (387)
T PRK09331 19 EFINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFL----G----MDEARVTHGAREG 90 (387)
T ss_pred cccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHh----C----CCcEEEeCCHHHH
Confidence 4667655444445578899998887632100 1 111223467777777775 3 2468899999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-------CCcEEEEcCCCCC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-------KSRLLILCSPSNP 240 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-------~~~~i~l~~p~NP 240 (429)
+..++.+++++||+|+++.++|.+....++..|++++.++...+.++.+|++.+++++++ ++++|++++|+||
T Consensus 91 ~~~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~ 170 (387)
T PRK09331 91 KFAVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGN 170 (387)
T ss_pred HHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCC
Confidence 999999999999999999999988888889999999999984334567999999998863 6899999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~ 320 (429)
||...+ +++|+++|++| |+++|+|++|+.. ..+.+... .+..+++.|++|+++ .+.|+||+++++++
T Consensus 171 tG~~~~---l~~I~~la~~~-g~~livD~a~~~g----~~~~~~~~----~g~D~~~~s~~K~l~-~~~~~G~l~~~~~~ 237 (387)
T PRK09331 171 YGNLAD---AKKVAKVAHEY-GIPFLLNGAYTVG----RMPVDGKK----LGADFIVGSGHKSMA-ASAPSGVLATTEEY 237 (387)
T ss_pred Cccccc---HHHHHHHHHHc-CCEEEEECCcccC----CcCCCHHH----cCCCEEEeeCccccc-CCCCEEEEEECHHH
Confidence 999998 99999999999 9999999999852 21222222 345689999999998 66799999999998
Q ss_pred HHHHHHHhhcc--------cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec--CCceE
Q 014172 321 VAACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQGAF 390 (429)
Q Consensus 321 ~~~l~~~~~~~--------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~--p~~~~ 390 (429)
++.+.+....+ ..+.+.....++.++++. ..+.++ ..++..++++++.+.|++++|+++.. +....
T Consensus 238 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~---~~~~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~ 313 (387)
T PRK09331 238 ADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPH---VVERVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHD 313 (387)
T ss_pred HhhcccccCCCcccceeeeceecCchHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCC
Confidence 88775543211 112222233434444433 223333 34455667778999999998998873 22333
Q ss_pred EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
++.++.|..... .. ....+..++.++|.++ ||.
T Consensus 314 i~~~~~~~~~~~-~~--~~~~~~~~~~~~L~~~-gI~ 346 (387)
T PRK09331 314 LMKFETPSFDEI-AK--KHKRRGFFLYEELKKR-GIH 346 (387)
T ss_pred eEEEeCCchhHH-hh--hccccchhHHHHHHHc-Cce
Confidence 455665521000 00 0012456788888655 886
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=221.95 Aligned_cols=295 Identities=13% Similarity=0.065 Sum_probs=205.7
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--CC--CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G--~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
|.|+.+... ++|+.+++++.+.++....+++.. .| ..++.+.+.+.+.+..| .++++|++|+|+++++..++.
T Consensus 2 ~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~i~~~~g~t~a~~~~~~ 78 (381)
T PRK02948 2 IYLDYAATT-PMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG--GEEQGIYFTSGGTESNYLAIQ 78 (381)
T ss_pred EeccCCCCC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHH
Confidence 456555544 357888999988776432222210 11 12333344444444445 367899999999999998888
Q ss_pred Hhc----CCCCEEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCC
Q 014172 174 AVC----SPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 174 ~l~----~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~ 246 (429)
+++ ++||.|++....|+++.. .++..|++++.++++. ++.+|++++++.+++++++|++++|+||||.+++
T Consensus 79 ~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~ 156 (381)
T PRK02948 79 SLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITPDTVLASIQHANSEIGTIQP 156 (381)
T ss_pred HHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehh
Confidence 875 578999999977766544 4567799999999863 3568999999999888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH-HHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACN 325 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~-~~~l~ 325 (429)
+++|.++|+++ ++++++|+++.. +..+..+. ..+.++++.|++|.+|.+| +|++++++++ ...+.
T Consensus 157 ---~~~I~~l~~~~-~~~vivD~~~~~----g~~~~~~~----~~~~d~~~~s~~K~~gp~G--~G~l~~~~~~~~~~~~ 222 (381)
T PRK02948 157 ---IAEIGALLKKY-NVLFHSDCVQTF----GKLPIDVF----EMGIDSLSVSAHKIYGPKG--VGAVYINPQVRWKPVF 222 (381)
T ss_pred ---HHHHHHHHHHc-CCEEEEEChhhc----cccccCcc----cCCCCEEEecHHhcCCCCc--EEEEEEcCCCCCCCcc
Confidence 88999999999 999999977654 21112222 2456788999999999788 7998877654 11111
Q ss_pred H----HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC-ceE----EEEEec
Q 014172 326 K----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAF----YLFIDF 396 (429)
Q Consensus 326 ~----~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~-~~~----~~~~~l 396 (429)
. .......+++.+++.++.++++. ..+++++.+++++++++++.+.|+++ |+++.... .++ .+-+.+
T Consensus 223 ~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~ 298 (381)
T PRK02948 223 PGTTHEKGFRPGTVNVPGIAAFLTAAEN---ILKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTI 298 (381)
T ss_pred cCCCCCCCcCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEe
Confidence 0 01112345788888888888875 34678888999999999999999998 66554322 221 122223
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+. .+..++..+| +++||.|
T Consensus 299 ~~------------~~~~~~~~~l-~~~gI~v 317 (381)
T PRK02948 299 KG------------IEGQYTMLEC-NRRGIAI 317 (381)
T ss_pred CC------------CCHHHHHHhc-ccCCEEE
Confidence 32 1567788776 4559886
|
|
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=215.74 Aligned_cols=281 Identities=16% Similarity=0.199 Sum_probs=202.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCC-----------CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 014172 109 TPVLIAEAGINAIREGFTRYTPNA-----------GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 177 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~-----------G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 177 (429)
+|+.+++++.+.+.... .+ |.. ...++|+.+++++ |.+ ++++|++|+|+++++..++.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~a~~~~~~~l~~ 83 (373)
T cd06453 11 KPQPVIDAIVDYYRHYN-AN-VHRGVHELSARATDAYEAAREKVARFI----NAP-SPDEIIFTRNTTEAINLVAYGLGR 83 (373)
T ss_pred CCHHHHHHHHHHHHhcC-CC-CCCCccHHHHHHHHHHHHHHHHHHHHh----CCC-CCCeEEEeCCHHHHHHHHHHHhhh
Confidence 46778888888775421 11 111 1235666666665 421 267999999999999999999987
Q ss_pred ---CCCEEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHH
Q 014172 178 ---PGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 178 ---~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
+||+|++++++|++. ...++..|++++.++.+ .++.+|++++++.+.+++++|++++|+||||.+++ +
T Consensus 84 ~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~---~ 158 (373)
T cd06453 84 ANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD--DDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP---V 158 (373)
T ss_pred cCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC--CCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC---H
Confidence 899999999999874 34456789999999986 34568999999999989999999999999999999 8
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhc
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~ 330 (429)
++|.++|++| ++++++|++|.... .+..+.. .+..+++.|++|.++. .++||+++++++++.+......
T Consensus 159 ~~i~~~~~~~-~~~li~D~a~~~~~----~~~~~~~----~~~d~~~~s~~K~~~~--~g~g~~~~~~~~~~~~~~~~~g 227 (373)
T cd06453 159 KEIGEIAHEA-GVPVLVDGAQSAGH----MPVDVQD----LGCDFLAFSGHKMLGP--TGIGVLYGKEELLEEMPPYGGG 227 (373)
T ss_pred HHHHHHHHHc-CCEEEEEhhhhcCc----eeeeccc----cCCCEEEeccccccCC--CCcEEEEEchHHhhcCCCeecC
Confidence 8999999999 99999999987422 1112222 2345777899999984 5689999999888776543211
Q ss_pred --------------------c-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC---
Q 014172 331 --------------------F-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--- 386 (429)
Q Consensus 331 --------------------~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p--- 386 (429)
+ ...++.....++.++++.- .+..++.++++.+++++++.+.|++++|+++..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l--~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 305 (373)
T cd06453 228 GEMIEEVSFEETTYADLPHKFEAGTPNIAGAIGLGAAIDYL--EKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAED 305 (373)
T ss_pred CCccccccccccccCCCccccCCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccc
Confidence 0 1124444444444445420 1234567788888999999999999888887632
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++ ++++.++.. +..++.++|.+ +||.+
T Consensus 306 ~~~-~~~~~~~~~------------~~~~i~~~l~~-~gi~i 333 (373)
T cd06453 306 RAG-VVSFNLEGI------------HPHDVATILDQ-YGIAV 333 (373)
T ss_pred cCC-eEEEEECCc------------CHHHHHHHHHH-CCEEe
Confidence 343 466677542 67788888866 48865
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=213.78 Aligned_cols=299 Identities=19% Similarity=0.211 Sum_probs=211.0
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRY---TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y---~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
++++++|+.++ ..+..+|++.+++.+++.+..... ....|..+..+.+++.+.+..| . +..++++++++++.
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g---~-~~~~~~~SG~~An~ 119 (406)
T PRK13393 44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHG---K-EAALLFTSGYVSNW 119 (406)
T ss_pred CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhC---C-CcEEEeCCcHHHHH
Confidence 35689988886 677778999999999987532211 1112434445555555555555 2 34444444556788
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc----cCCcEEEEcCCCCCccC
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGS 243 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~----~~~~~i~l~~p~NPtG~ 243 (429)
.++..+.. +||.|++....|......++..|.+++.++. .|++.+++.+. +++++|++++++|++|.
T Consensus 120 ~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~ 192 (406)
T PRK13393 120 AALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFESVYSMDGD 192 (406)
T ss_pred HHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcCCCCCCCc
Confidence 78887765 7888888888888888888888998877764 26666666553 35788899999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccChhcccccceeeEEEcCHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~ 322 (429)
+.+ +++|.++|++| ++++|+||+|....|+..... +....+. .+.+|+++||||.+|++| ||+++++++++
T Consensus 193 ~~~---l~~i~~l~~~~-~~~livDea~~~g~~g~~G~g-~~~~~~~~~~~~i~~~tlsKa~g~~G---G~~~~~~~~~~ 264 (406)
T PRK13393 193 IAP---IAEICDVAEKH-GAMTYLDEVHAVGLYGPRGGG-IAEREGLADRLTIIEGTLAKAFGVMG---GYITGSAALCD 264 (406)
T ss_pred hhC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCc-hhhhcCCCCCCeEEEEeCchhhcccC---ceeeCCHHHHH
Confidence 999 99999999999 999999999985555432221 1121111 234688899999999888 99999999999
Q ss_pred HHHHHhhcc--cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc
Q 014172 323 ACNKIQSQF--TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (429)
Q Consensus 323 ~l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~ 400 (429)
.+......+ +.+.+...+.++.++|+. .++. ...+.+++++++++.+.|+++ |+++.++.+++ +.+.++..
T Consensus 265 ~l~~~~~~~~~t~~~~p~~~aa~~aaL~~---~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~i-~~v~~~~~- 337 (406)
T PRK13393 265 FIRSFASGFIFTTSLPPAVAAGALASVRH---LKAS-SAERERHQDRVARLRARLDKA-GIPHLPNPSHI-VPVMVGDP- 337 (406)
T ss_pred HHHHhCcCceecCccCHHHHHHHHHHHHH---HhhC-HHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCe-EEEEeCCH-
Confidence 888765443 344566777888888875 2222 233466788899999999887 77777777766 44444321
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 338 ----------~~~~~l~~~L~~~~Gi~v 355 (406)
T PRK13393 338 ----------VLCKQISDELLDRYGIYV 355 (406)
T ss_pred ----------HHHHHHHHHHHHhCCEEE
Confidence 145789999988779876
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=216.69 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=215.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC
Q 014172 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~ 186 (429)
...|+.+++++.+.. ..| ...+..++++.+.+++++.+|.+ ..+.+++++|+++++..++..++++||+|++.+
T Consensus 18 ~~~~~~V~~a~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~g~~-~~~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~ 91 (401)
T PLN02409 18 VNIPERVLRAMNRPN----EDH-RSPAFPALTKELLEDVKYIFKTK-SGTPFIFPTTGTGAWESALTNTLSPGDKVVSFR 91 (401)
T ss_pred CCCCHHHHHHhcCCC----CCC-CCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 345777887775432 223 24567889999999999998853 234788899999999999999999999999999
Q ss_pred CCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc----CCcEEEEcCCCCCccCCCCHHHHHHHHHH--HH
Q 014172 187 PFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARI--VA 258 (429)
Q Consensus 187 p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPtG~~~~~~~l~~I~~~--a~ 258 (429)
+.|.+. ...++..|++++.++.+.+ ..+|++++++++++ ++++|++++++||||.++| +++|.++ |+
T Consensus 92 ~~~~~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~---~~~i~~l~~~~ 166 (401)
T PLN02409 92 IGQFSLLWIDQMQRLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND---LAGVRKLLDCA 166 (401)
T ss_pred CCchhHHHHHHHHHcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCC---HHHHHHHHhhh
Confidence 988766 4677888999999998643 34799999999975 7899999999999999999 5555555 99
Q ss_pred hCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh---------
Q 014172 259 KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--------- 329 (429)
Q Consensus 259 ~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~--------- 329 (429)
++ |+++|+|++++. +..+..+. .++.++++.|.+|+++.| .++||++.++++++.+.....
T Consensus 167 ~~-g~~~vvD~v~s~----g~~~id~~----~~~~D~~~~s~~K~l~~P-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 236 (401)
T PLN02409 167 QH-PALLLVDGVSSI----GALDFRMD----EWGVDVALTGSQKALSLP-TGLGIVCASPKALEASKTAKSPRVFFDWAD 236 (401)
T ss_pred cc-CcEEEEEccccc----CCcccccc----ccCccEEEEcCccccCcC-CCcceeEECHHHHHHHhcCCCCCeecCHHH
Confidence 99 999999999874 22221221 135558888889999743 479999999998887653210
Q ss_pred ---------cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC----ceEEEEEec
Q 014172 330 ---------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFIDF 396 (429)
Q Consensus 330 ---------~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~----~~~~~~~~l 396 (429)
....+++...+.++..+++.- .+..++++.++++++++++.+.|+++ |+++..+. .+..+++.+
T Consensus 237 ~~~~~~~g~~~~~Tp~~~~~~al~~al~~~--~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~ 313 (401)
T PLN02409 237 YLKFYKLGTYWPYTPSIQLLYGLRAALDLI--FEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVV 313 (401)
T ss_pred HHHHHhcCCCCCCCccHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeC
Confidence 012346666677777777641 13457888999999999999999888 88876542 223356777
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|.. .+..++.+.|++++||.+
T Consensus 314 p~~-----------~~~~~l~~~l~~~~~i~i 334 (401)
T PLN02409 314 PEG-----------IDSAEIVKNAWKKYNLSL 334 (401)
T ss_pred CCC-----------CCHHHHHHHHHHhCCEEE
Confidence 643 367889999999988875
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=216.10 Aligned_cols=277 Identities=16% Similarity=0.147 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC------------
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS------------ 177 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------------ 177 (429)
+..+.+.+...+......|....+..++++++++++.+.+|.+.++.++++|+|+++++..++.+++.
T Consensus 12 ~~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~ 91 (345)
T cd06450 12 PALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGR 91 (345)
T ss_pred HHHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccccc
Confidence 44566666666654445688888999999999999999999754456899999999999999988753
Q ss_pred CC--CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCCCHHH
Q 014172 178 PG--DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 178 ~g--d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
+| +.|+++.++|.++...++..|++++.++++++ +.+|++.|++++++ +++++++++|+||||.+.+
T Consensus 92 ~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~--- 166 (345)
T cd06450 92 GIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP--- 166 (345)
T ss_pred ccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC---
Confidence 33 47889999999999999999999999998643 46899999999987 7888889999999999987
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~ 329 (429)
+++|+++|++| |+++++|++|..+.+........ .....+...+..|++|.++ ++.++|+++.+
T Consensus 167 ~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~--~~~~~~~d~~~~s~~K~l~-~p~g~g~~~~~------------ 230 (345)
T cd06450 167 LEEIADLAEKY-DLWLHVDAAYGGFLLPFPEPRHL--DFGIERVDSISVDPHKYGL-VPLGCSAVLVR------------ 230 (345)
T ss_pred HHHHHHHHHHh-CCeEEEechhhHHHhhChhhHHH--hcCccccCEEEEchhHhhC-CCcchHHHHHH------------
Confidence 99999999999 99999999999766432111111 1111233466789999876 77888987554
Q ss_pred cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecCCccCCcccCCC
Q 014172 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 330 ~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
.+.+.++...+. .+.+++++++..++++++.+.|++++++++.. ++++++ .+.++....
T Consensus 231 -------~~~~~~~l~~l~-----~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv-~f~~~~~~~------- 290 (345)
T cd06450 231 -------ALKLWATLRRFG-----RDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLV-CFRLKPSVK------- 290 (345)
T ss_pred -------HHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEE-EEEECCcch-------
Confidence 444444555543 45677888888899999999999988887654 566664 444542100
Q ss_pred CCCChHHHHHHHHHhCCee
Q 014172 409 KIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~ 427 (429)
...+..++.++|.+++++.
T Consensus 291 ~~~~~~~i~~~L~~~g~~~ 309 (345)
T cd06450 291 LDELNYDLSDRLNERGGWH 309 (345)
T ss_pred hhHHHHHHHHHHHhcCCEE
Confidence 0014678999987774544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=213.28 Aligned_cols=300 Identities=15% Similarity=0.113 Sum_probs=201.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCCC---CC---CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPN---AG---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~~---~G---~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
++.|+|..+++. +|+.+++++...+...+ ..++.. .| ...+.+...+.+++.+|. +..+|++++| +++
T Consensus 25 ~~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~--~~~~i~~~sg-t~a 99 (416)
T PRK00011 25 EEHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--EYANVQPHSG-SQA 99 (416)
T ss_pred hcCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceeeecCCc-hHH
Confidence 468999999977 67889998877653211 011100 12 122333234466666774 3445666655 678
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHH-----HHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCc
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPE-----MARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 241 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~-----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPt 241 (429)
+..++.+++++||+|+++.|+|.++.. .....|++++.++++. +++.+|++++++.+++ ++++|++++++|
T Consensus 100 l~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~k~v~~~~~~~-- 176 (416)
T PRK00011 100 NAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGLIDYDEVEKLALEHKPKLIIAGASAY-- 176 (416)
T ss_pred HHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCCcCHHHHHHHHHhcCCCEEEECCCcC--
Confidence 999999999999999999999986532 1234467888888764 3467999999999975 789998876655
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HH
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH 319 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~ 319 (429)
|...+ +++|.++|++| |+++|+|++|.. +.+.+..+..+. ...++++||||++ +|+|.||++++ ++
T Consensus 177 ~~~~~---~~~I~~la~~~-~~~livD~a~~~g~~~~g~~~~~~~------~~di~~~S~~K~l--~g~~gg~i~~~~~~ 244 (416)
T PRK00011 177 SRPID---FKRFREIADEV-GAYLMVDMAHIAGLVAAGVHPSPVP------HADVVTTTTHKTL--RGPRGGLILTNDEE 244 (416)
T ss_pred CCccC---HHHHHHHHHHc-CCEEEEECcchhcccccCccCCCCC------CCcEEEecCCcCC--CCCCceEEEeCCHH
Confidence 45566 89999999999 999999999863 222221111111 2348899999976 68999999996 68
Q ss_pred HHHHHHHHhhcccCCCchH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecC
Q 014172 320 FVAACNKIQSQFTSGASSI-SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~-~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~ 397 (429)
+++.+.+.......+.+.. .+.++..++... ..+++++..++++++++++.+.|+++ |+++.. ...++++|+.++
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~ 321 (416)
T PRK00011 245 LAKKINSAVFPGIQGGPLMHVIAAKAVAFKEA--LEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLR 321 (416)
T ss_pred HHHHHHHHhCccccCCccHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCc
Confidence 8888877655443333322 333322233210 23457888899999999999999987 887653 123478899986
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+. + .+..++.+.|. +.||.+
T Consensus 322 ~~-~---------~~~~~~~~~L~-~~GI~v 341 (416)
T PRK00011 322 SK-G---------LTGKEAEAALE-EANITV 341 (416)
T ss_pred cc-C---------CCHHHHHHHHH-HcCcEE
Confidence 32 0 14567777664 559876
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=217.17 Aligned_cols=316 Identities=16% Similarity=0.155 Sum_probs=215.6
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++ .++.+.+++.+++... ..|....+..++...+++.+.+.+|. ..++|++++|+++++.
T Consensus 34 dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~v~~~~sgsea~~ 110 (413)
T cd00610 34 DGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL-THFSLGFFYNEPAVELAELLLALTPE--GLDKVFFVNSGTEAVE 110 (413)
T ss_pred CCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhC-cCccCcccCCHHHHHHHHHHHHhCCC--CCCEEEEcCcHHHHHH
Confidence 577899999874 4455 5889999999988653 45544334677888888888877764 5689999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChHHHHHHcC-------------CEEEEecCCCC----CCCCCCHHHHHhhccc---
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRIS----ENFLLDPKVLESKLTE--- 227 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~----~~~~~d~e~l~~~l~~--- 227 (429)
.+++.+. .+++.|++.+++|.++.......+ .+++.+|.+.. ..+..|++.+++.+++
T Consensus 111 ~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 190 (413)
T cd00610 111 AALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPE 190 (413)
T ss_pred HHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCC
Confidence 9999874 578999999999998665443322 23556665421 1244589999998875
Q ss_pred CCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 228 KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++++++...+|++|.++ +.+++++|.++|++| ++++|+||+|.++.+.+.. ... ... +...-+.||||.++
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~g~g~~g~~-~~~-~~~---~~~~d~~t~sK~l~- 263 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKH-GILLIADEVQTGFGRTGKM-FAF-EHF---GVEPDIVTLGKGLG- 263 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcch-hhH-hhc---CCCCCeEEEccccc-
Confidence 455555555567789876 677799999999999 9999999999976433321 111 111 11122568999999
Q ss_pred ccceeeEEEcCHHHHHHH--HHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---C-
Q 014172 307 TGWRLGYIAGPKHFVAAC--NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---G- 380 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l--~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~---g- 380 (429)
.|+|+||+++++++++.+ .......+.+.+.+++.++.++|+. .++ .++.++++++++++.+.|+++. +
T Consensus 264 ~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~---l~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~ 338 (413)
T cd00610 264 GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEV---LEE--EGLLENAAELGEYLRERLRELAEKHPL 338 (413)
T ss_pred CccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 589999999999998886 3333344566788888888888864 122 3456677777777777776641 2
Q ss_pred ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 ~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+....+. |.++|+.++...... ........++++.|+++ ||.+
T Consensus 339 ~~~~~~~-g~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-gv~v 381 (413)
T cd00610 339 VGDVRGR-GLMIGIELVKDRATK---PPDKELAAKIIKAALER-GLLL 381 (413)
T ss_pred EEEeecC-ceEEEEEEecCCCcC---CcchHHHHHHHHHHHHC-CeEE
Confidence 2222344 455777775320000 00001457788888776 8876
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=209.30 Aligned_cols=243 Identities=20% Similarity=0.224 Sum_probs=180.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--------
Q 014172 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD-------- 180 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd-------- 180 (429)
+|+++++++.+...+ |. +..++++++++++++.+|. +++++|+|+++++.+++.+++++||
T Consensus 25 ~~~~v~~a~~~~~~~----~~---~~~~~~~~~~~~~a~~~g~----~~~~~~~g~t~al~~al~al~~~Gd~~~~~~~~ 93 (363)
T TIGR01437 25 VSDEVADAQKRGAQN----YF---EIKELVNKTGEYIANLLGV----EDAVIVSSASAGIAQSVAAVITRGNRYLVENLH 93 (363)
T ss_pred CCHHHHHHHHHHHhc----CC---CHHHHHHHHHHHHHHhhCC----CeEEEEcCHHHHHHHHHHHHhcCCCcchhhccc
Confidence 589999999988643 42 3578899999999888773 4789999999999999999999998
Q ss_pred -------EEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEE-EcCCCCCccCCCCHH
Q 014172 181 -------EVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI-LCSPSNPTGSVYPKN 248 (429)
Q Consensus 181 -------~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~-l~~p~NPtG~~~~~~ 248 (429)
+|+++.|.|..| ...+...|++++.++.+ +.+|++++++++++++++++ +++|+||+|.+.+
T Consensus 94 ~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~~t~ai~~v~~~~~~~g~~~~-- 167 (363)
T TIGR01437 94 DSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITEKTAAILYIKSHHCVQKSMLS-- 167 (363)
T ss_pred ccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcChhceEEEEEecCCCCcCCcCC--
Confidence 999999888766 57788899999999862 34899999999999999776 6889999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh
Q 014172 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (429)
Q Consensus 249 ~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~ 328 (429)
+++|+++|++| |+++|+|++|+.-. ..+..+ +..+++.|++|.+ +|++.||+++++++++.+....
T Consensus 168 -~~~i~~~a~~~-gi~vivD~a~~~~~------~~~~~~----g~D~~~~S~~K~l--~gp~~G~l~~~~~~i~~~~~~~ 233 (363)
T TIGR01437 168 -VEDAAQVAQEH-NLPLIVDAAAEEDL------QKYYRL----GADLVIYSGAKAI--EGPTSGLVLGKKKYIEWVKLQS 233 (363)
T ss_pred -HHHHHHHHHHc-CCeEEEECCCCCch------HHHHHc----CCCEEEEeCCccc--CCCceEEEEEcHHHHHHHHhcc
Confidence 78899999999 99999999997210 111122 3358889999976 6889999999988887764322
Q ss_pred hccc--CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 329 SQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 329 ~~~~--~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
.... .........+..++++. ..++..+..+.+.++++.+.+.|++++|+++..
T Consensus 234 ~~~~~~~~~~~~~~~gl~aAl~~---~~~~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~ 289 (363)
T TIGR01437 234 KGIGRAMKVGKENILGLTAALEQ---YLSTGKESGAEMVAKLTPFIEALNTLKGVSASI 289 (363)
T ss_pred CCCcceeccCHHHHHHHHHHHHH---HHccCcccHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 1110 00111222233333332 111222344455667888999999999988763
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-24 Score=213.27 Aligned_cols=286 Identities=16% Similarity=0.110 Sum_probs=206.3
Q ss_pred ChHHHHHHHHHHHHcCCC------CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-----C
Q 014172 109 TPVLIAEAGINAIREGFT------RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-----S 177 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~------~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-----~ 177 (429)
+++.+++++.+.+..... .| +..+...+++++++++.. .|. .++++|++|+|+++++..+++++. +
T Consensus 11 ~~~~v~~~~~~~~~~~~~n~~~~~~~-~~~~~~~l~~a~~~~~~~-~~~-~~~~~i~~t~g~teal~~~~~~~~~~~~~~ 87 (382)
T TIGR03403 11 LDPKVKELMDPFFCDIYGNPNSLHQF-GTATHPAIAEALDKLYKG-INA-RDLDDIIITSCATESNNWVLKGVYFDEILK 87 (382)
T ss_pred CCHHHHHHHHHHHHhcCcCCccccHH-HHHHHHHHHHHHHHHHHH-cCc-CCCCeEEEeCCHHHHHHHHHHHHHHhhccc
Confidence 467899999888764221 12 123456888888888753 332 257899999999999999888762 4
Q ss_pred C-CCEEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 178 P-GDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 178 ~-gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+ +++|+++...|+++.. .++..|++++.+|+++ ++.+|++.++++++++++++++++|+||||.+++ +++|
T Consensus 88 ~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~---~~~I 162 (382)
T TIGR03403 88 GGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE--QGTITAEQVREAITEKTALVSVMWANNETGMIFP---IKEI 162 (382)
T ss_pred CCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC--CCCCCHHHHHHhcccCCeEEEEEcccCCCccccC---HHHH
Confidence 5 4789999877776554 4567899999999864 3568999999999989999999999999999999 7899
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH--HHHH---HHHh
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--VAAC---NKIQ 328 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~--~~~l---~~~~ 328 (429)
.++|+++ |+++++|+++.. +..+..+.. .+..+++.|++|.+|.+| +|+++..+.. ...+ ....
T Consensus 163 ~~la~~~-g~~~ivD~a~~~----g~~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~~p~~~g~~~~~ 231 (382)
T TIGR03403 163 GEICKER-GVLFHTDAVQAI----GKIPVDVQK----AGVDFLSFSAHKFHGPKG--VGGLYIRKGVELTPLFHGGEHMG 231 (382)
T ss_pred HHHHHHc-CCEEEEechhhc----CCCccCccc----cCCCEEEEcchhhCCCCc--eEEEEECCCCCCCCcccCCCCCC
Confidence 9999999 999999999874 222222221 244588999999888777 5777654432 1111 0011
Q ss_pred hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc---eEEEEEecCCccCCccc
Q 014172 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFSTYYGSEAE 405 (429)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~---~~~~~~~l~~~~~~~~~ 405 (429)
.....+++.+.+.++..+++. ..++++...+++++.++++.+.|++++|+++..+.. +.++.+.++..
T Consensus 232 ~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 302 (382)
T TIGR03403 232 GRRSGTLNVPYIVAMGEAMRL---ANEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV------ 302 (382)
T ss_pred CcccCCcChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC------
Confidence 112344677777777778765 355677888899999999999999988998876542 33456666542
Q ss_pred CCCCCCChHHHHHHHHHhCCeecC
Q 014172 406 GFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 406 ~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+..++..+|. +.||.++
T Consensus 303 ------~~~~~~~~L~-~~gI~v~ 319 (382)
T TIGR03403 303 ------EGEAMLWDLN-KAGIAAS 319 (382)
T ss_pred ------CHHHHHHhhc-cCCEEEE
Confidence 5778887764 5588763
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=212.33 Aligned_cols=296 Identities=13% Similarity=0.133 Sum_probs=207.1
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCC--CC---CCC----CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 99 RLAAGEPDFDTPVLIAEAGINAIREGF--TR---YTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 99 ~L~~g~~~~~~p~~v~~a~~~~~~~~~--~~---Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+..++++|+.+.+++.+.++... .. |.. ..+..++|+.+++++ |.+ ..++|++|+|+++++.
T Consensus 2 yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~----~~~-~~~~v~~~~g~t~al~ 76 (376)
T TIGR01977 2 YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLF----NAP-SSAHVVFTNNATTALN 76 (376)
T ss_pred CccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHh----CcC-CCCeEEEeCCHHHHHH
Confidence 466677777888999999988876532 12 211 134456777777776 421 3358999999999999
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 170 QAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 170 ~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
+++.+++++||+|+++.+.|.++.. .++..|.+++.++.+. ++.+|+++++++++++++++++++|+||||.++
T Consensus 77 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~ 154 (376)
T TIGR01977 77 IALKGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKTNTKLIVVSHASNVTGTIL 154 (376)
T ss_pred HHHHhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCCCCeEEEEECCCCCccccC
Confidence 9999999999999999999987653 4556699999998763 456899999999998999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH-HHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAAC 324 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~-~~~l 324 (429)
+ +++|.++|+++ |+++|+|++++... ....+. ..+..+++.|++|.++.|. ..|.++..++. +..+
T Consensus 155 ~---~~~i~~l~~~~-~~~livD~a~~~g~----~~~~~~----~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~ 221 (376)
T TIGR01977 155 P---IEEIGELAQEN-GIFFILDAAQTAGV----IPIDMT----ELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPL 221 (376)
T ss_pred C---HHHHHHHHHHc-CCEEEEEhhhccCc----cCCCch----hcCCCEEEecccccccCCC-CceEEEEcCCcCcCce
Confidence 9 78899999999 99999999997532 111111 1345688999999885332 35666554432 1111
Q ss_pred HHH----------------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC-
Q 014172 325 NKI----------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ- 387 (429)
Q Consensus 325 ~~~----------------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~- 387 (429)
... .+....+++.....++.++++.- .+...+.++++.+++.+.+.+.|.+++|+++..|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 299 (376)
T TIGR01977 222 KSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGLNAGIKFI--EKIGIANIAKKECMLTEKLLNGLREINKVKIYGPAD 299 (376)
T ss_pred ecCCCccccccccccccchhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCC
Confidence 100 00011234444555555555430 12235667788888999999999988788876541
Q ss_pred ---ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++.+++. +..++.+.|.+++||.+
T Consensus 300 ~~~~~~~v~~~~~~~------------~~~~~~~~L~~~~gi~v 331 (376)
T TIGR01977 300 PANRVGVVSFTVEGI------------DSEEVADILDEKFDIAT 331 (376)
T ss_pred ccccCCeEEEEECCC------------CHHHHHHHHhccCCEEE
Confidence 123467777643 67789988887768765
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=206.97 Aligned_cols=317 Identities=15% Similarity=0.156 Sum_probs=218.8
Q ss_pred HHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEe
Q 014172 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS 161 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t 161 (429)
++.+..+.+.+.+.+.-.+ .|...-++.+.+.+++.+.+...........+..++.+.+.+++.+.+|. ++.+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~~~~~ 82 (371)
T PRK13520 6 EILEELEEYRSEDLKYERI-LSSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHL--PDAYGYIT 82 (371)
T ss_pred HHHHHHHHHHhcCCCHHHe-eeeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCC--CCCCeEEe
Confidence 4555666666665443222 33323335677888888877643211111235566667777777777773 45678999
Q ss_pred cChHHHHHHHHHHhcC----CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCC
Q 014172 162 NGAKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 237 (429)
Q Consensus 162 ~G~~~al~~~l~~l~~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p 237 (429)
+|+++++..++.++.. +||+|++.++.|.++...++..|++++.+|.+ .++.+|++.|++++++++++|+++++
T Consensus 83 ~ggt~a~~~a~~~~~~~~~~~~~~vl~~~~~h~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~vi~~~~ 160 (371)
T PRK13520 83 SGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADMLGVELRRAPLD--DDYRVDVKAVEDLIDDNTIGIVGIAG 160 (371)
T ss_pred cCcHHHHHHHHHHHHhhccCCCceEEecCcchHHHHHHHHHcCceEEEecCC--CCCcCCHHHHHHHHhhCCEEEEEEcC
Confidence 9999999988877654 57999999999999999999999999999975 34568999999999888888888889
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc-
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG- 316 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~- 316 (429)
+|+||.+.+ +++|.++|+++ |+++++|++|..+...-........+. ..+...+..|.+|. +++|.++|+++.
T Consensus 161 ~~~tG~~~~---l~~I~~l~~~~-g~~livD~a~~~~~~~~~~~~~~~~~~-~~~vd~~~~s~~K~-~~a~~~~G~~~~~ 234 (371)
T PRK13520 161 TTELGQVDP---IPELSKIALEN-GIFLHVDAAFGGFVIPFLDDPPNFDFS-LPGVDSITIDPHKM-GLAPIPAGGILFR 234 (371)
T ss_pred CcCCcccCC---HHHHHHHHHHc-CCCEEEEecchhHHHHhhcCCCCcccc-CCCCceEEECCccc-cCccCCceEEEEc
Confidence 999999999 99999999999 999999999986542110110111111 12333555677884 557889998775
Q ss_pred CHHHHHHHHHHhhcc--------cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce-eecCC
Q 014172 317 PKHFVAACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQ 387 (429)
Q Consensus 317 ~~~~~~~l~~~~~~~--------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~ 387 (429)
++++++.+....... ..+.+.....++.++++.- .++.+++++++..++++++.+.|+++ |++ +..+.
T Consensus 235 ~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~ 311 (371)
T PRK13520 235 DESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVMKYL--GREGYRKVVERCMENTRWLAEELKER-GFEPVIEPV 311 (371)
T ss_pred CHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHHhhh--cHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCC
Confidence 666776654211111 0112334455566666531 24557788899999999999999988 887 55666
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++ +.++++ +..++.++|.++ ||.|
T Consensus 312 ~~~-v~~~~~--------------~~~~v~~~L~~~-gi~v 336 (371)
T PRK13520 312 LNI-VAFDDP--------------NPDEVREKLRER-GWRV 336 (371)
T ss_pred ceE-EEEecC--------------CHHHHHHHHHHC-Ccee
Confidence 664 566664 467899888776 8876
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=207.24 Aligned_cols=289 Identities=12% Similarity=0.160 Sum_probs=200.9
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEc
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~ 185 (429)
+..+++.+.+++.... ..+.+ ...+..+.+.+.+.+..|.+-+...|++++|+++++..++..++.+||+|++.
T Consensus 7 p~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~~~~~~vi~~ 80 (355)
T TIGR03301 7 PLSTSATVRDAMLVDW----CHWDS--EFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVPRDGKLLVL 80 (355)
T ss_pred CCCCCHHHHHHhhhhc----cCCCH--HHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhccCCCCeEEEE
Confidence 3445677777776632 12211 22344555555555555643222368889999999999999999888887766
Q ss_pred CCC-CCC-hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc--CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 186 APF-WVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 186 ~p~-y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~--~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
.+. |.. +...++..|++++.++.+. ++.+|++.+++.+++ +.+.+++++++||||...+ +++|+++|++|
T Consensus 81 ~~~~~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~l~~~~- 154 (355)
T TIGR03301 81 INGAYGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAADPDITHVATVHHETTTGILNP---LEAIAKVARSH- 154 (355)
T ss_pred CCCchhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhH---HHHHHHHHHHc-
Confidence 554 443 4567888999999998753 456899999999864 4567778999999999998 89999999999
Q ss_pred CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHHHh------------
Q 014172 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ------------ 328 (429)
Q Consensus 262 ~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~~~------------ 328 (429)
++++|+|++++.. ..+.++.. .+..++++|++|.+ |++| +||+++++++++.+....
T Consensus 155 ~~~livD~~~s~g----~~~~~~~~----~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (355)
T TIGR03301 155 GAVLIVDAMSSFG----AIPIDIEE----LDVDALIASANKCLEGVPG--FGFVIARRDLLEASAGNARSLYLDLYDQWA 224 (355)
T ss_pred CCEEEEEeccccC----Ccccchhh----cCccEEEecCCcccccCCc--eeEEEECHHHHHHhhCCCCCceeeHHHHHH
Confidence 9999999877642 12222222 35668899999987 4455 799999999888765210
Q ss_pred -----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC---CceEEEEEecCCcc
Q 014172 329 -----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYY 400 (429)
Q Consensus 329 -----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p---~~~~~~~~~l~~~~ 400 (429)
....++++...+.++..+++.-. .+.++++..++++++++++.+.|+++ |+++..+ .+++++|+.+|...
T Consensus 225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~-~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
T TIGR03301 225 YMEKTGKWRFTPPTHTVYAFAQALEELE-AEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDP 302 (355)
T ss_pred HhhhcCCCCCCCcHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCC
Confidence 11233467777777666665310 01226778889999999999999988 8875533 34567888887420
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. .+..++.++|.++ ||.+
T Consensus 303 ~---------~~~~~~~~~l~~~-gi~i 320 (355)
T TIGR03301 303 D---------FDFDDFYQELKER-GFVI 320 (355)
T ss_pred c---------chHHHHHHHHHHC-CEEE
Confidence 0 1456888887765 8876
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=211.17 Aligned_cols=218 Identities=14% Similarity=0.197 Sum_probs=166.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCC----ChHHHHHHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV----SYPEMARIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~----~~~~~~~~~g~~~~~ 205 (429)
.++...+|++++|++++ ....+++ +++++++..++.+++++||+|+++.|.|. .|...++..|++++.
T Consensus 43 ~~p~~~~L~~~lA~l~g-------~~~~v~~-~sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~ 114 (376)
T PRK06460 43 ANPTVLELTKKIVELEN-------AEMGVAF-SSGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDA 114 (376)
T ss_pred CCccHHHHHHHHHHHhC-------CCcEEEe-CCHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEE
Confidence 34567899999999864 1234555 55568999999999999999999987554 455677889999988
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++.+ +.+.+++.+++++|+|++++|+||||.+++ +++|.++|+++ |++||+|++|.... ...
T Consensus 115 ~~~~-------~~~~l~~~~~~~tklV~l~sp~NPtG~v~d---~~~I~~la~~~-g~~vivDea~~~~~-------~~~ 176 (376)
T PRK06460 115 SNPG-------SDNIIEKAKSKRYDVVFVENITNPLLRVVD---ITELSKVCKEN-GSILIVDATFSTPI-------NQK 176 (376)
T ss_pred ECCC-------CHHHHHHhcCCCceEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCcCccc-------cCC
Confidence 8753 234455656778999999999999999999 67899999999 99999999997531 111
Q ss_pred cCCCCCCceEEEeccChhcc-cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
.+ ..+.++++.|+||.++ ..+.|+||+++++++++.+.+....++.+.+.. .+..++. ..++++.+.++.
T Consensus 177 ~l--~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~~~~~---~a~~~l~----~~~~l~~r~~~~ 247 (376)
T PRK06460 177 PL--ELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTSLDPH---AAYLTLR----GIKTLKIRMDVI 247 (376)
T ss_pred hh--hcCCCEEEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCCCCHH---HHHHHHh----chhhHHHHHHHH
Confidence 11 1345699999999985 223679999999999999988777776655543 2334444 357888889999
Q ss_pred HHHHHHHHHHhccCCCce
Q 014172 365 RERRDFLVKSFGELEGVK 382 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~g~~ 382 (429)
.++++.+.+.|++.|.++
T Consensus 248 ~~n~~~l~~~L~~~p~v~ 265 (376)
T PRK06460 248 NRNAEQIAEFLEGHPKVV 265 (376)
T ss_pred HHHHHHHHHHHHcCCCcc
Confidence 999999999999877653
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=212.07 Aligned_cols=216 Identities=16% Similarity=0.188 Sum_probs=168.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPT 208 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~ 208 (429)
-..+|++.+++++ | .+++++++|+++++..++.+++++||+|+++.+.|.+... .+...|++++.+++
T Consensus 62 ~~~~le~~la~l~----g----~~~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 62 TVTMFQERLAALE----G----AEACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred HHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 3467777777775 3 3568999999999999999999999999999999876543 45678999999986
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
+ |++.+++++++++|+|++++|+||||.+.+ +++|+++|++| |++||+|++|....+. .++ .
T Consensus 134 ~-------d~~~l~~~i~~~tklV~ie~p~NptG~v~d---l~~I~~la~~~-gi~livD~t~~~~~~~----~pl-~-- 195 (390)
T PRK08133 134 T-------DLDAWRAAVRPNTKLFFLETPSNPLTELAD---IAALAEIAHAA-GALLVVDNCFCTPALQ----QPL-K-- 195 (390)
T ss_pred C-------CHHHHHHhcCcCCeEEEEECCCCCCCCcCC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-h--
Confidence 2 789999999999999999999999999998 89999999999 9999999998753321 111 1
Q ss_pred CCCCceEEEeccChhccccccee-eEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
.+..+++.|+||.++.+|+++ ||+++++++++.+...........+.+.+.. ++.. .+.+..+.+++.++
T Consensus 196 --~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~---~l~g----l~tl~~R~~~~~~~ 266 (390)
T PRK08133 196 --LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWV---FLKG----LETLSLRMEAHSAN 266 (390)
T ss_pred --hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHH---HHcc----cchHHHHHHHHHHH
Confidence 234588999999998899998 6677888888777766555554455554333 3332 33566777788889
Q ss_pred HHHHHHHhccCCCcee
Q 014172 368 RDFLVKSFGELEGVKM 383 (429)
Q Consensus 368 r~~l~~~L~~l~g~~~ 383 (429)
+..+.+.|++.|+++.
T Consensus 267 a~~la~~L~~~p~v~~ 282 (390)
T PRK08133 267 ALALAEWLEAHPGVER 282 (390)
T ss_pred HHHHHHHHHhCCCeeE
Confidence 9999999998877653
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=210.62 Aligned_cols=300 Identities=13% Similarity=0.161 Sum_probs=208.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++. +|++.+++.+.+.+.. .++.. ...+....+++.+.+..+ .+.+++++++++++.
T Consensus 38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~~-~~~~~~~~l~~~l~~~~~----~~~~~~~~sGseA~e 111 (403)
T PRK05093 38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLW-HISNV-FTNEPALRLAKKLIDATF----AERVFFANSGAEANE 111 (403)
T ss_pred CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcC-cccCc-cCCHHHHHHHHHHHhhCC----CCEEEEeCchHHHHH
Confidence 577899998873 33443 7899999999886521 12111 122334466666655433 358999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHH-HHHHcC------------CEEEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
.+++.... .+ +.|+..+-+|.+... .....| .+++.++. .|++.+++.+.++
T Consensus 112 ~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 184 (403)
T PRK05093 112 AAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAVIDDH 184 (403)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHHhcCC
Confidence 98886521 22 567777777776543 222211 11222221 1889999999878
Q ss_pred CcEEEEcCCCCCccCCC--CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 229 SRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~--~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++|+++ |.||+|.++ +.+.+++|.++|++| |+++|+||+|.++.+.|.. .+.....-..+ +.||||.++
T Consensus 185 ~aaiiie-p~~~~gg~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~~~pd----i~s~sK~l~- 256 (403)
T PRK05093 185 TCAVVVE-PIQGEGGVIPATPEFLQGLRELCDQH-NALLIFDEVQTGMGRTGDL-FAYMHYGVTPD----ILTSAKALG- 256 (403)
T ss_pred eEEEEEe-cccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccc-hhhhhcCCCCC----EEEeccccc-
Confidence 8888777 788887765 889999999999999 9999999999987666542 22211111112 678999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---Ccee
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKM 383 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~---g~~~ 383 (429)
+|+|+||+++++++++.+.......+++.+.+.|.++.++|+. .. -.+..+.++++++++.+.|+++. ++-.
T Consensus 257 ~G~rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~L~~---~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 331 (403)
T PRK05093 257 GGFPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAVFDI---IN--TPEVLEGVKARRQRFVDGLQKINQKYGVFS 331 (403)
T ss_pred CCcceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH---Hh--hccHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 9999999999999998887654555667899999999998864 11 23556889999999999998851 2222
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+.+|+++|+.++... ..++.+|+++|+++ ||.+
T Consensus 332 ~~~~~G~~~~~~l~~~~---------~~~~~~~~~~l~~~-Gv~v 366 (403)
T PRK05093 332 EIRGMGLLIGAELKPQY---------KGRARDFLNAAAEE-GVMV 366 (403)
T ss_pred eEeeCceEEEEEecCcc---------hhHHHHHHHHHHHC-CeEE
Confidence 34566888999986420 01467899999887 7875
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-24 Score=210.21 Aligned_cols=219 Identities=13% Similarity=0.139 Sum_probs=164.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 205 (429)
+++...+|++.+|++++ . +..+++++++.++..++.+++++||+|+++.|.|......+ ...|+++..
T Consensus 59 ~~pt~~~Le~~lA~l~G-------~-~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~ 130 (386)
T PRK06767 59 GNPTVKLFEERMAVLEG-------G-EEALAFGSGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSF 130 (386)
T ss_pred CCcchHHHHHHHHHHhC-------C-CcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEE
Confidence 55567889999998863 2 34555566677899999999999999999999888765543 334666655
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ |+++|+|++|....+. .++
T Consensus 131 ~~~-------~d~~~l~~~i~~~tklV~lesp~NptG~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~~----~pl- 194 (386)
T PRK06767 131 CDM-------ETEADIENKIRPNTKLIFVETPINPTMKLID---LKQVIRVAKRN-GLLVIVDNTFCSPYLQ----RPL- 194 (386)
T ss_pred eCC-------CCHHHHHHhhCcCceEEEEeCCCCCCceecC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-
Confidence 543 3889999999989999999999999999999 89999999999 9999999999743221 111
Q ss_pred cCCCCCCceEEEeccChhccccccee-eEEEcCHHHHHHHHH-HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNK-IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~~l~~-~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
. .+..+++.|+||.++.+|+|+ ||+++++++++.+.+ .........+.+.+.++...|+ .+..+.++
T Consensus 195 ~----~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~-------tl~~r~~~ 263 (386)
T PRK06767 195 E----LGCDAVVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLK-------TLAVRMDR 263 (386)
T ss_pred h----cCCcEEEecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------cHHHHHHH
Confidence 1 234588999999998889985 999999988777643 3333444455555444333333 34556778
Q ss_pred HHHHHHHHHHHhccCCCcee
Q 014172 364 FRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~~ 383 (429)
.+++...+.+.|+++|+++.
T Consensus 264 ~~~~a~~la~~L~~~p~v~~ 283 (386)
T PRK06767 264 HCDNAEKIVSFLKNHDAVEG 283 (386)
T ss_pred HHHHHHHHHHHHHcCCCccE
Confidence 88999999999999998864
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=208.70 Aligned_cols=304 Identities=15% Similarity=0.186 Sum_probs=210.7
Q ss_pred hcCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..+|+..|.. .++ .+|++.+++.+++++... . ......++++++++++.+..+ .+.+++++++++++
T Consensus 26 ~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~la~~l~~~~~----~~~~~~~~sG~~a~ 99 (377)
T PRK02936 26 NNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH-V-SNLFTNSLQEEVASLLAENSA----GDLVFFCNSGAEAN 99 (377)
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-c-ccccCCHHHHHHHHHHHhcCC----CCEEEEeCCcHHHH
Confidence 35778999998873 233 378999999999876322 2 233557899999999986544 25899999999999
Q ss_pred HHHHHHhc-CCC-CEEEEcCCCCCChHH-HHHHcCCEEE---EecCCCCCCCC--CCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 169 LQAVLAVC-SPG-DEVIIPAPFWVSYPE-MARIADATPV---ILPTRISENFL--LDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 169 ~~~l~~l~-~~g-d~Vlv~~p~y~~~~~-~~~~~g~~~~---~v~~~~~~~~~--~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
..+++... .+| +.|++.+++|++... .....+.... ..|..++..+. .|++.+++.+.+++++|++..++++
T Consensus 100 ~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~ii~e~i~~~ 179 (377)
T PRK02936 100 EAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEVAAVMLEVVQGE 179 (377)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCeEEEEEecccCC
Confidence 99988542 344 679999998885432 3333332111 11111110000 1789999999888999999999999
Q ss_pred ccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH
Q 014172 241 TGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (429)
Q Consensus 241 tG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~ 319 (429)
+|.. .+.+.+++|.++|++| |+++|+||+|.++.+.|. ...+..+.. ... +.+|||.++ +|+|+||++++++
T Consensus 180 ~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~-~~~~~~~~~-~~d---i~t~sK~l~-~G~~ig~v~~~~~ 252 (377)
T PRK02936 180 GGVIPADPAFLQEVQTLCKKF-GALLIIDEVQTGIGRTGT-LFAYEQFGL-DPD---IVTVAKGLG-NGIPVGAMIGKKE 252 (377)
T ss_pred CCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCch-hhHHHhhCC-CCc---EEEEccccc-CCCccEEEEEcHH
Confidence 9876 5789999999999999 999999999998766553 212222211 111 347999999 9999999999999
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCceeecCCceEEEEEe
Q 014172 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFID 395 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l~g~~~~~p~~~~~~~~~ 395 (429)
+++.+.......+++.+.++|.++.++|+.. . -+..++.++++++++.+.|++ ++.+..+.+ .|+++|++
T Consensus 253 ~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~---~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~ 326 (377)
T PRK02936 253 LGTAFGPGSHGSTFGGNPLAMAAAKEVLQVI---K--QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG-KGLMIGIE 326 (377)
T ss_pred HHhhccCCCCCCCCCCCHHHHHHHHHHHHHH---H--hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee-cceEEEEE
Confidence 9988865544556678999999999999752 1 123445566666666666655 333333334 45789999
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++. +...+.+.|.++ ||.+
T Consensus 327 ~~~-------------~~~~~~~~l~~~-gv~v 345 (377)
T PRK02936 327 CTE-------------EVAPVIEQLREE-GLLV 345 (377)
T ss_pred ecc-------------hHHHHHHHHHHC-CeEE
Confidence 863 356777776554 8765
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-23 Score=204.13 Aligned_cols=194 Identities=23% Similarity=0.329 Sum_probs=152.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~ 188 (429)
.++..+++.+.+.++.. + |...+++++++++.+.+| .+++++|+|+++++.+++.++ ++|||+|+++.++
T Consensus 10 ~~~e~~a~~~~~~~~~~-~----~~g~~~~~~e~~la~~~g----~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t 80 (376)
T TIGR02379 10 TGQELEYIAEAISEGKL-S----GDGPFSRRCETWLENRTG----TKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYT 80 (376)
T ss_pred CHHHHHHHHHHHHcCCc-c----CCcHHHHHHHHHHHHHhC----CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 45568888888876532 2 223567777777776655 468999999999999998887 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 014172 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (429)
Q Consensus 189 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~D 268 (429)
|..+...+...|++++.+++++ +++.+|++.+++++++++|+|+ |+||+|...+ +++|.++|++| |++||+|
T Consensus 81 ~~~~~~~~~~~G~~~v~vd~d~-~~~~~d~~~le~~i~~~tk~Ii---p~~~~G~~~d---~~~I~~la~~~-~i~vIeD 152 (376)
T TIGR02379 81 FVSTANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTKAIV---PVHYAGVACD---MDTIMALANKH-QLFVIED 152 (376)
T ss_pred cHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCceEEE---EeCCCCCccC---HHHHHHHHHHC-CCEEEEE
Confidence 9999999999999999999975 4478999999999999999986 6788999998 88999999999 9999999
Q ss_pred cCCcccc-cCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEcC-HHHHHHHHHHhh
Q 014172 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQS 329 (429)
Q Consensus 269 eay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~ 329 (429)
++|+.+. |.+....+ +. .+.+.|| +|.+. +|.+.|+++++ +++.+.++..+.
T Consensus 153 aa~~~g~~~~~~~~g~---~~-----~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~~ 208 (376)
T TIGR02379 153 AAQGVMSTYKGRALGS---IG-----HLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIRE 208 (376)
T ss_pred CccccCCccCCcccCC---CC-----CEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHHH
Confidence 9999764 54432211 11 1334444 37786 78789998875 778888776543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=209.33 Aligned_cols=297 Identities=14% Similarity=0.177 Sum_probs=207.3
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|... ++- +|.+.+++.+.+++... ++. ....+....+++.+.+..+ .+.+++++++++++.
T Consensus 38 ~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~-~~~-~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGseA~e 111 (396)
T PRK04073 38 EGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTL-TSR-AFHSDQLGPWYEKVAKLTG----KDMVLPMNTGAEAVE 111 (396)
T ss_pred CCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccc-ccc-ccCCHHHHHHHHHHHhcCC----CCeEEEcCChHHHHH
Confidence 57889999887633 333 78999999998875321 111 1122344555555554333 368999999999999
Q ss_pred HHHHHhcC---------CC-CEEEEcCCCCCChH-HHHHHcCCE------------EEEecCCCCCCCCCCHHHHHhhcc
Q 014172 170 QAVLAVCS---------PG-DEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 170 ~~l~~l~~---------~g-d~Vlv~~p~y~~~~-~~~~~~g~~------------~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+++.... +| +.|+..+-+|.+.. ..+...+.. +..++. .|++.+++.++
T Consensus 112 ~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~ 184 (396)
T PRK04073 112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-------GDLEALKAAIT 184 (396)
T ss_pred HHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-------CCHHHHHHhcc
Confidence 98887631 34 67888877777644 333333321 122221 27899999998
Q ss_pred cCCcEEEEcCCCCCccCCCCHH-HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~-~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
+++++|+++.++||||.+++.+ .+++|.++|++| |+++|+||+|.++.+.+... . .+.. +...-+.+|||.+|
T Consensus 185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~~-~-~~~~---~~~pdi~~~sK~lg 258 (396)
T PRK04073 185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEE-NVLFIADEIQTGLGRTGKLF-A-CDWD---NVTPDMYILGKALG 258 (396)
T ss_pred cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhCCCcCcHHH-H-hhhc---CCCCCEEEeccccc
Confidence 8899999999999999998765 699999999999 99999999999865544211 1 1111 11122456899999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC--CCcee
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVKM 383 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l--~g~~~ 383 (429)
++|+|+||+++++++++.+.......+++.+.+++.++.++|+. .++ +.+.+..+++++++.+.|+++ +++..
T Consensus 259 ~gg~~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aaL~~---~~~--~~l~~~~~~~~~~l~~~L~~l~~~~i~~ 333 (396)
T PRK04073 259 GGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIAALEV---LEE--EKLPERSLELGEYFKEQLKEIDNPMIKE 333 (396)
T ss_pred CCCCcceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHhhcCCcccc
Confidence 88899999999999998886554555667899999999999974 111 234466677888899988876 33444
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.| .|++++++. ++.+++++|+++ ||.+
T Consensus 334 ~~~~g-~~~~~~~~~-------------~~~~~~~~l~~~-Gv~~ 363 (396)
T PRK04073 334 VRGRG-LFIGVELNE-------------PARPYCEALKEE-GLLC 363 (396)
T ss_pred eecce-EEEEEEecc-------------hHHHHHHHHHHC-CeEE
Confidence 45555 557888752 467899998876 8876
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.8e-24 Score=209.82 Aligned_cols=218 Identities=16% Similarity=0.176 Sum_probs=170.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 205 (429)
+.+...+|++.++++++ .+.+++++++++++..++.+++++||+|+++.|+|.+... .+...|++++.
T Consensus 62 ~~p~~~~le~~lA~l~g--------~~~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~ 133 (398)
T PRK08249 62 TNPTVQAFEEKVRILEG--------AEAATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTL 133 (398)
T ss_pred CChHHHHHHHHHHHHhC--------CCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEE
Confidence 34456788888888863 3456777777899999999999999999999999987543 45578999887
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++. .|++.+++++++++++|++++|+||||.+++ +++|.++|++| ++++|+|++|....+.. ++
T Consensus 134 vd~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~v~d---l~~I~~la~~~-gi~livD~t~a~~~~~~----~l- 197 (398)
T PRK08249 134 CET-------GDHEQIEAEIAKGCDLLYLETPTNPTLKIVD---IERLAAAAKKV-GALVVVDNTFATPINQN----PL- 197 (398)
T ss_pred cCC-------CCHHHHHHhcCCCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCcCccccCC----ch-
Confidence 763 4899999999999999999999999999999 88899999999 99999999998643221 11
Q ss_pred cCCCCCCceEEEeccChhccccccee-eEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
. .+..+++.|+||.++.+|.++ ||+++++++++.+.........+.+.+.+..+...++ .+....++.
T Consensus 198 ~----~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~-------tL~~R~~~~ 266 (398)
T PRK08249 198 A----LGADLVIHSATKFLSGHADALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMK-------TLKLRVRQQ 266 (398)
T ss_pred h----hCCCEEeccCceecCCCCCceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcc-------hHHHHHHHH
Confidence 1 233488899999998667665 7778888999988877776666677776665554443 355666777
Q ss_pred HHHHHHHHHHhccCCCce
Q 014172 365 RERRDFLVKSFGELEGVK 382 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~g~~ 382 (429)
.+++..+.+.|++.|.++
T Consensus 267 ~~na~~la~~L~~~p~v~ 284 (398)
T PRK08249 267 QESAMALAKYLQTHPKVE 284 (398)
T ss_pred HHHHHHHHHHHHcCCCee
Confidence 888888889998876654
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=208.25 Aligned_cols=256 Identities=16% Similarity=0.186 Sum_probs=183.6
Q ss_pred EcCCCC-CCCCChHHHHHHHHHHHHc-------CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHH
Q 014172 99 RLAAGE-PDFDTPVLIAEAGINAIRE-------GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (429)
Q Consensus 99 ~L~~g~-~~~~~p~~v~~a~~~~~~~-------~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 170 (429)
+|+.++ -.+..+|++.+++.+++++ ....|+...+..+|++++|++++ .++.+++++|.++.+ .
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g-------~e~al~~~sG~~a~~-~ 73 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLG-------TESAILYSDGASTTS-S 73 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhC-------CCcEEEecCcHHHHH-H
Confidence 555555 5666788999999999875 22346655667788888888874 346777888877766 5
Q ss_pred HHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-----------cCCcEEEEcCCCC
Q 014172 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-----------EKSRLLILCSPSN 239 (429)
Q Consensus 171 ~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-----------~~~~~i~l~~p~N 239 (429)
++.+++++||.|+++++.|.++...+...+++++.++.+..+ +++.+.+.+. +++++|++.+++|
T Consensus 74 ~i~~l~~~GD~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~d~~----~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~ 149 (392)
T PLN03227 74 TVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMK----DLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYK 149 (392)
T ss_pred HHHHhCCCCCEEEEeccccHHHHHHHHHcCCeEEEeCCCCHH----HHHHHHHHhhhhccccccccCCCcEEEEEcCCcC
Confidence 788899999999999999999998888889988888764211 3444444442 3578899999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc--cCCCCCCceEEEeccChhcccccceeeEEEcC
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA--SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~--~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~ 317 (429)
|+|.+.+ +++|.++|++| |+++|+||+|....++..+..... .+....+.+|++.|+||.+| ++.||++++
T Consensus 150 ~~G~i~~---l~~i~~l~~~~-g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g---~~gg~v~~~ 222 (392)
T PLN03227 150 NTGTLAP---LKELVALKEEF-HYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG---SVGGMTVGS 222 (392)
T ss_pred CCCcccC---HHHHHHHHHHc-CCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh---ccCcEEecC
Confidence 9999999 88999999999 999999999983323221111111 12222456799999999876 455999999
Q ss_pred HHHHHHHHHHhhcccCCC--chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 318 KHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
+++++.+.......+++. +++.+.++.+++.. ..+ .++++++++++.+++.+.|++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~---~~~-~~~~~~~l~~~~~~l~~~L~~ 280 (392)
T PLN03227 223 EEVVDHQRLSGSGYCFSASAPPFLAKADATATAG---ELA-GPQLLNRLHDSIANLYSTLTN 280 (392)
T ss_pred HHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHH---Hhc-CHHHHHHHHHHHHHHHHHHHh
Confidence 998887765433333333 35566666666653 111 345677888899999999875
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-23 Score=206.96 Aligned_cols=222 Identities=14% Similarity=0.168 Sum_probs=175.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcC
Q 014172 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIAD 200 (429)
Q Consensus 125 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g 200 (429)
+.+| +++....|++++|++.+ .+++++++|+++++..++.+++++||+|++++|+|.+....+ ...|
T Consensus 46 Y~R~-~~pt~~~L~~~lA~l~g--------~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~g 116 (386)
T PRK08045 46 YSRR-GNPTRDVVQRALAELEG--------GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_pred eeCC-CCccHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCC
Confidence 3455 45567788888888853 246999999999999999999999999999999999643322 2234
Q ss_pred CEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCC
Q 014172 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280 (429)
Q Consensus 201 ~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~ 280 (429)
.++..++. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ +++||+|++|....+
T Consensus 117 i~v~~vd~-------~d~e~l~~~l~~~tklV~l~sP~NPtG~v~d---i~~I~~ia~~~-g~~vivDeay~~~~~---- 181 (386)
T PRK08045 117 YRVLFVDQ-------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREA-GAVSVVDNTFLSPAL---- 181 (386)
T ss_pred eEEEEeCC-------CCHHHHHHhcccCCeEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCcccc----
Confidence 46666541 5899999999989999999999999999999 88999999999 999999999986432
Q ss_pred CCccccCCCCCCceEEEeccChhcc-cccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHH
Q 014172 281 HTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (429)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~ 358 (429)
..++ . .+..+++.|++|.++ ..+.+.|++++ ++++++.+.......+.+.+.+.+..+...|+. +.
T Consensus 182 ~~pl-~----~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~t-------l~ 249 (386)
T PRK08045 182 QNPL-A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LV 249 (386)
T ss_pred CCch-h----hCCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhcc-------HH
Confidence 1122 1 233489999999995 55678999877 578888888777777888888888877777764 66
Q ss_pred HHHHHHHHHHHHHHHHhccCCCce
Q 014172 359 KMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.++++..+++..+.+.|++.|.++
T Consensus 250 ~R~~~~~~na~~la~~L~~~p~v~ 273 (386)
T PRK08045 250 PRMELAQRNAQAIVKYLQTQPLVK 273 (386)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEe
Confidence 777888888999999999887664
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=210.88 Aligned_cols=315 Identities=17% Similarity=0.208 Sum_probs=213.2
Q ss_pred hcCCCeEEcCCCCCCC--C-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEPDF--D-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~--~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..+|+..|.... + .++.+.+++.+++.+....+.+..+..+|+++|++++. ..++|++++|+++++
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~-------~~~~v~~~~sGseA~ 117 (423)
T TIGR00713 45 VDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVP-------SVEMVRFVNSGTEAT 117 (423)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCC-------cccEEEEeCCHHHHH
Confidence 3578899999988553 3 37999999999987654323356677889999988753 236899999999999
Q ss_pred HHHHHHhc--CCCCEEEEcCCCCCChHHHHHH---cCCEEEEecCCCC-------CCC---CCCHHHHHhhcc---cCCc
Q 014172 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRIS-------ENF---LLDPKVLESKLT---EKSR 230 (429)
Q Consensus 169 ~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~-------~~~---~~d~e~l~~~l~---~~~~ 230 (429)
..+++... ...++|+..+++|.++...+.. .|......+..+. +.. ..|++.+++.+. ++++
T Consensus 118 e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~a 197 (423)
T TIGR00713 118 MSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIA 197 (423)
T ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEE
Confidence 99888643 2458999999999997654332 1111111111100 000 017899998886 5678
Q ss_pred EEEE-cCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc
Q 014172 231 LLIL-CSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 231 ~i~l-~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 308 (429)
+|++ +.|+| +|.+.+ ++.+++|.++|++| |+++|+||+|.++.++........... .+ +.+|||.++ +|
T Consensus 198 avi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~r~g~~~~~~~~~~~--pD----i~t~sK~l~-~G 268 (423)
T TIGR00713 198 GVIVEPVAGN-MGVVPPKPEFLAGLRALTEEY-GSLLIFDEVMTGFRVALGGAQEYFGVE--PD----LTTLGKIIG-GG 268 (423)
T ss_pred EEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHh-CCEEEEEccccccccCcchhHHHhCCC--cc----hhhhhhhhc-CC
Confidence 8887 58888 798887 58899999999999 999999999998855322111111121 12 447999999 99
Q ss_pred ceeeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-e
Q 014172 309 WRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-S 384 (429)
Q Consensus 309 ~R~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~ 384 (429)
+|+||+++++++++.+... ....+++.+.+++.++.++|+.-. .+.++++.++..+..++.+.+.+++. ++.. .
T Consensus 269 ~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v 346 (423)
T TIGR00713 269 LPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLD-EEGVYTELDELAKRLAEGLSEVLEDT-GIPHTV 346 (423)
T ss_pred CceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEE
Confidence 9999999999999888632 233456789999999999887421 12367788888888888888888877 5433 2
Q ss_pred cCCceEE-EEEecCCccCCcccCCCCCCC---hHHHHHHHHHhCCeec
Q 014172 385 EPQGAFY-LFIDFSTYYGSEAEGFGKIEN---SESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~-~~~~l~~~~~~~~~~~~~~~~---~~~~~~~Ll~~~gV~v 428 (429)
.+.|+|+ +++..+..... ... ...+ ...+++.|+++ ||.+
T Consensus 347 ~~~g~~~~v~~~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~-Gv~v 390 (423)
T TIGR00713 347 NRVGSMFSLFFTEEEVTNY-ADA--KKSDTELFAKFFHEMLDK-GVFL 390 (423)
T ss_pred EeeccEEEEEEecCCCCCh-hhh--hcccHHHHHHHHHHHHHC-CeEE
Confidence 3455553 33543221000 000 0001 23688888875 8876
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=206.26 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=178.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
+.|.++.+... +.+.++.+..... ..+ +.+| +++-..+|++.+|++++ .+..+++++++.++..++.
T Consensus 30 ~pi~~~~~~~~-~~~~~~~~~~~~~-~~~~~y~r~-~~p~~~~Le~~lA~l~G--------~~~~~~~~sG~~Ai~~~l~ 98 (398)
T PRK07504 30 EALFLTQGFVY-DTAEAAEARFKGE-DPGFIYSRY-SNPTVDMFEKRMCALEG--------AEDARATASGMAAVTAAIL 98 (398)
T ss_pred CCeECCCCccC-CCHHHHHHHhccC-cCCceeecC-CCchHHHHHHHHHHHhC--------CCeeeEecCHHHHHHHHHH
Confidence 45888877643 2344444322111 111 2344 44556788999998863 2234557788888888888
Q ss_pred HhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
+++++||+|+++.|.|..+... +...|++++.++. +|++.+++++++++|+|++++|+||||.+++
T Consensus 99 ~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-------~d~e~l~~ai~~~tklV~lesp~NptG~v~d--- 168 (398)
T PRK07504 99 CQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-------LDLDNWEKAVRPNTKVFFLESPTNPTLEVID--- 168 (398)
T ss_pred HHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCcEecC---
Confidence 8899999999999999986544 3457899888852 6899999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceee-EEEcCHHHHH-HHHHH
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA-ACNKI 327 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G-~v~~~~~~~~-~l~~~ 327 (429)
+++|.++|+++ |+++|+|++|....+. .++ . .+.++++.|++|.++.+|+|+| +++++++++. .+...
T Consensus 169 l~~I~~la~~~-gi~lvvD~a~a~~~~~----~~~-~----~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~ 238 (398)
T PRK07504 169 IAAVAKIANQA-GAKLVVDNVFATPLFQ----KPL-E----LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDY 238 (398)
T ss_pred HHHHHHHHHHc-CCEEEEECCccccccC----Cch-h----hCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHH
Confidence 89999999999 9999999999864432 111 1 2456899999999988999996 6667777664 34444
Q ss_pred hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 328 ~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
......+++.+....+...|+ .+..+.++..++...+.+.|++.|++.
T Consensus 239 ~~~~g~~~s~~~A~~~l~~L~-------tl~~R~~~~~~na~~la~~L~~~p~v~ 286 (398)
T PRK07504 239 FRHTGPSLSPFNAWTLLKGLE-------TLPVRVRQQTESAAAIADFLAGHPKVA 286 (398)
T ss_pred HHHhCCCCCHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 444454556655554444443 355666666788888888888877654
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=205.35 Aligned_cols=222 Identities=14% Similarity=0.179 Sum_probs=170.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcC
Q 014172 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIAD 200 (429)
Q Consensus 125 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g 200 (429)
+.+| +++...+|+++++++.+ .+++++++|+++++.+++.+++++||+|+++.|+|.++...+ ...|
T Consensus 45 Y~R~-~~p~~~~le~~lA~l~g--------~~~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~ 115 (382)
T TIGR02080 45 YSRS-GNPTRDLLQQALAELEG--------GAGAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGC 115 (382)
T ss_pred ccCC-CCchHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcC
Confidence 4556 45566888888888762 368999999999999999999999999999999998654432 2334
Q ss_pred CEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCC
Q 014172 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280 (429)
Q Consensus 201 ~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~ 280 (429)
.++..++. .|++.+++++++++|+|++++|+||||.+++ +++|.++|+++ +++||+|++|..+.+.
T Consensus 116 ~~v~~~d~-------~d~~~l~~ai~~~tklV~l~~p~NPtG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~~--- 181 (382)
T TIGR02080 116 FRVLFVDQ-------GDEQALRAALAQKPKLVLIETPSNPLLRVVD---IAKICHLAKAV-GAVVVVDNTFLSPALQ--- 181 (382)
T ss_pred eEEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCcccccC---
Confidence 56655531 3899999999989999999999999999999 88899999999 9999999999864321
Q ss_pred CCccccCCCCCCceEEEeccChhcc-cccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHH
Q 014172 281 HTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (429)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~ 358 (429)
.++ .+ +..++++|+||.++ .+|.+.|++++ ++++++.+.......+.+.+.+....+...+ +.+.
T Consensus 182 -~pl-~~----gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l-------~tl~ 248 (382)
T TIGR02080 182 -NPL-AL----GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGL-------RTLV 248 (382)
T ss_pred -Cch-hh----CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHccc-------chHH
Confidence 111 11 23489999999985 56789999876 6788888887777767777777665543333 3355
Q ss_pred HHHHHHHHHHHHHHHHhccCCCce
Q 014172 359 KMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.+.++..++...+.+.|++.|.++
T Consensus 249 ~R~~~~~~na~~~a~~L~~~p~v~ 272 (382)
T TIGR02080 249 ARMRLQQRNAQAIVEYLQTQPLVK 272 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCee
Confidence 556677788888888888876654
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=200.92 Aligned_cols=277 Identities=18% Similarity=0.279 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCC
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 189 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~y 189 (429)
++-.+++.+.+..+. .| |..++++++++++++.+| .+++++++|+++++.+++.++ +++||+|+++.|+|
T Consensus 11 ~~~~~~~~~~l~~~~-~~----g~~~~~~~~e~~la~~~g----~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~ 81 (375)
T PRK11706 11 GTELDYIQQAMSSGK-LC----GDGGFTRRCQQWLEQRFG----SAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTF 81 (375)
T ss_pred HHHHHHHHHHHHcCC-cc----CCCHHHHHHHHHHHHHhC----CCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCc
Confidence 444677777776543 22 334677888777777665 368999999999999887766 68999999999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 014172 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (429)
Q Consensus 190 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~De 269 (429)
.++...+...|++++.+++++ +++.+|++++++++++++++|+++ |++|...+ +++|.++|++| |++||+|+
T Consensus 82 ~~~~~~~~~~G~~~v~~d~d~-~~~~~d~~~le~~i~~~tk~i~~~---~~~G~~~~---~~~i~~la~~~-~i~vIeD~ 153 (375)
T PRK11706 82 VSTANAFVLRGAKIVFVDIRP-DTMNIDETLIEAAITPKTRAIVPV---HYAGVACE---MDTIMALAKKH-NLFVVEDA 153 (375)
T ss_pred HHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcCCCCeEEEEe---CCCCCccC---HHHHHHHHHHc-CCEEEEEC
Confidence 999999999999999999875 447899999999999999999865 46999888 88999999999 99999999
Q ss_pred CCcccc-cCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEcCHHHHHHHHHHhhcc---------------
Q 014172 270 IYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGPKHFVAACNKIQSQF--------------- 331 (429)
Q Consensus 270 ay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~~~~~~~~l~~~~~~~--------------- 331 (429)
+|+.+. +++.. +..+. .+.+.||+ |.++ +|.+.++++.++++.+.++..+...
T Consensus 154 a~a~g~~~~~~~---~g~~~-----~~~~~Sf~~~K~l~-~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 224 (375)
T PRK11706 154 AQGVMSTYKGRA---LGTIG-----HIGCFSFHETKNYT-AGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYT 224 (375)
T ss_pred ccccccccCCee---eecCc-----CEEEEeCCCCcccc-ccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcce
Confidence 999765 33321 22221 24455555 9997 6888888888899888776654321
Q ss_pred --cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC--C-ceee-cCC----ceEEEEEecCCccC
Q 014172 332 --TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--G-VKMS-EPQ----GAFYLFIDFSTYYG 401 (429)
Q Consensus 332 --~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~--g-~~~~-~p~----~~~~~~~~l~~~~~ 401 (429)
..+.+...+....+.... ..+.+++..++.+++.+.+.+.|+.++ | +.+. .+. ..++.|+.++..
T Consensus 225 ~~~~g~~~~~~~~~aa~~~~---ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 299 (375)
T PRK11706 225 WVDIGSSYLPSELQAAYLWA---QLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDL-- 299 (375)
T ss_pred eeecccccCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCc--
Confidence 012222111111111110 123356666666677777778887765 2 4322 122 123456666532
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++.+.|.++ ||.+
T Consensus 300 ---------~~r~~l~~~L~~~-gI~~ 316 (375)
T PRK11706 300 ---------EDRSALINFLKEA-GIMA 316 (375)
T ss_pred ---------CCHHHHHHHHHHC-CCCc
Confidence 2578888888776 8864
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=204.52 Aligned_cols=222 Identities=16% Similarity=0.233 Sum_probs=171.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCCh----HHHHHHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY----PEMARIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~----~~~~~~~g~ 201 (429)
.+| +++-..+|++.+++++ | .+.+++++++++++..++.+++++||+|+++.+.|.+. ...++..|+
T Consensus 49 ~r~-~~p~~~~le~~la~l~----g----~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~ 119 (380)
T TIGR01325 49 SRY-ANPTVAAFEERIAALE----G----AERAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGI 119 (380)
T ss_pred ecC-CCchHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCC
Confidence 344 3444678888888875 2 25688899999999999999999999999999988763 345677899
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~ 281 (429)
+++.++.+ |++.+++++++++++|++++|+||+|.+.+ +++|.++|+++ |+++|+|++|....+. .
T Consensus 120 ~v~~v~~~-------d~~~l~~~i~~~tklV~le~p~np~g~~~d---l~~I~~la~~~-gi~livD~a~~~~~~~--~- 185 (380)
T TIGR01325 120 EVSFVDPT-------DLNAWEAAVKPNTKLVFVETPSNPLGELVD---IAALAELAHAI-GALLVVDNVFATPVLQ--Q- 185 (380)
T ss_pred EEEEECCC-------CHHHHHHhcCCCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccC--C-
Confidence 99998752 789999999889999999999999999999 89999999999 9999999999864321 1
Q ss_pred CccccCCCCCCceEEEeccChhccccccee-eEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~ 360 (429)
++ . .+..+++.|++|.++.+|.++ |++++++++++.+...........+.+.... ++.. .+.+...
T Consensus 186 -pl-~----~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~---~l~~----l~tl~~r 252 (380)
T TIGR01325 186 -PL-K----LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWV---LLKG----LETLSLR 252 (380)
T ss_pred -ch-h----hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHH---HHhc----cCcHHHH
Confidence 11 1 244588999999998788886 7888899988888876655554445554333 3332 3345566
Q ss_pred HHHHHHHHHHHHHHhccCCCcee
Q 014172 361 VKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 361 ~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
.++..+++..+.+.|++.|+++.
T Consensus 253 ~~~~~~~a~~la~~L~~~p~v~~ 275 (380)
T TIGR01325 253 MQKQFDSALAIAEWLQAQPQVQA 275 (380)
T ss_pred HHHHHHHHHHHHHHHHcCCCccE
Confidence 77788888889999998877654
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=206.79 Aligned_cols=222 Identities=14% Similarity=0.193 Sum_probs=172.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCC----hHHHHHHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS----YPEMARIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~ 201 (429)
.+| +++...+|++.+|++.+ .++++++++++.++..++.+++++||+|+++...|.+ +...++..|+
T Consensus 65 ~r~-~~p~~~~le~~lA~l~g--------~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~ 135 (403)
T PRK07810 65 SRY-GNPTVSMFEERLRLIEG--------AEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV 135 (403)
T ss_pred eCC-CCchHHHHHHHHHHHhC--------CCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc
Confidence 444 44556788888888853 3478888888899999999999999999998865543 4456778899
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~ 281 (429)
+++.++. .|++++++++++++++|++++|+||||.+.+ +++|+++|+++ ++++|+|++|....+..
T Consensus 136 ~v~~vd~-------~d~~~l~~ai~~~tklV~~esp~Nptg~v~d---l~~I~~la~~~-g~~vivD~a~a~~~~~~--- 201 (403)
T PRK07810 136 ETVFVDG-------EDLSQWEEALSVPTQAVFFETPSNPMQSLVD---IAAVSELAHAA-GAKVVLDNVFATPLLQR--- 201 (403)
T ss_pred EEEEECC-------CCHHHHHHhcCcCceEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCCccccCC---
Confidence 9999974 2899999999999999999999999999999 99999999999 99999999998643321
Q ss_pred CccccCCCCCCceEEEeccChhccccccee-eEEEcCHHHHH-HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~-~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
++ . .+..+++.|++|.++..|+++ ||++++++.+. .++......+.+++.+.+..+...|+. +..
T Consensus 202 -~~-~----~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~t-------l~~ 268 (403)
T PRK07810 202 -GL-P----LGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLET-------LAL 268 (403)
T ss_pred -hh-h----cCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCc-------HHH
Confidence 11 1 245689999999998789987 88888877654 455554555566778777766665553 556
Q ss_pred HHHHHHHHHHHHHHHhccCCCcee
Q 014172 360 MVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+.++..++...+.+.|++.|++..
T Consensus 269 R~~~~~~~a~~~a~~L~~~p~v~~ 292 (403)
T PRK07810 269 RVRHSNASALRIAEFLEGHPAVRW 292 (403)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccE
Confidence 666677777778888888777654
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=197.44 Aligned_cols=300 Identities=20% Similarity=0.222 Sum_probs=225.0
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCC-CC--CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRY-TP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y-~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
|++++||+.|+ ..+..++++++++.+++++.-..- ++ ..|..++.+.+.+.+.+++| .+..+++++|-...+.
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g---~e~al~f~SGy~AN~~ 114 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLG---AEAALLFSSGFVANLG 114 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhC---CCcEEEEcccchhHHH
Confidence 67899999998 788888999999999987621111 11 24555555555555555555 4456677777665554
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccC
Q 014172 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGS 243 (429)
Q Consensus 170 ~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~ 243 (429)
++.+++++||.|+...-.|.+..+.+++.+++++.+.. .|++.|++.+.+ +.++|++.+.-...|.
T Consensus 115 -~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGd 186 (388)
T COG0156 115 -LLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVFSMDGD 186 (388)
T ss_pred -HHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccccCCCC
Confidence 89999999999999999999999999999999999985 288999998865 3567778888899999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccChhcccccceeeEEEcCHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~ 322 (429)
+.| +++|++++++| +.++++||+|+..++++.+......+... .+.+|+++||||+||..| ||+.++..+++
T Consensus 187 iAp---L~~l~~L~~ky-~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G---g~v~g~~~~~d 259 (388)
T COG0156 187 IAP---LPELVELAEKY-GALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG---GYIAGSAALID 259 (388)
T ss_pred cCC---HHHHHHHHHHh-CcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC---ceeeCcHHHHH
Confidence 999 99999999999 99999999999999886555444444222 456899999999999888 99999999999
Q ss_pred HHHHHhhcccCC--CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc
Q 014172 323 ACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (429)
Q Consensus 323 ~l~~~~~~~~~~--~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~ 400 (429)
.+....+.+.++ .++....++..+++. .+.....+++++++..++...++.. |+.+.+....+ +.+-+.+.
T Consensus 260 ~L~~~ar~~ifStalpP~~aaa~~~al~~----l~~~~~~r~~L~~~~~~~~~~~~~~-~~~~~~s~s~I-~pv~~gd~- 332 (388)
T COG0156 260 YLRNRARPFIFSTALPPAVAAAALAALRI----LEEGPERRERLQELAAFFRSLLKAL-GLVLLPSESPI-IPVILGDE- 332 (388)
T ss_pred HHHHhCCceeccCCCCHHHHHHHHHHHHH----HHhCHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCe-eeeEeCCH-
Confidence 998875555443 444444556667764 3334567777888888888666655 66664444444 55555432
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
....++...|+++ ||.+.
T Consensus 333 ----------~~a~~~s~~l~~~-Gi~v~ 350 (388)
T COG0156 333 ----------ERALEASRALLEE-GIYVS 350 (388)
T ss_pred ----------HHHHHHHHHHHHC-CeeEe
Confidence 2478999999998 99863
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-23 Score=202.57 Aligned_cols=267 Identities=12% Similarity=0.097 Sum_probs=190.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCCh--HHHHHHcCCEEEEecCCCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRIS 211 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~ 211 (429)
..++.+.+.+.+.+..|.+-..++|++|+|+++++..++.+++.+||.+++..+.+.+. ...++..|++++.++++.
T Consensus 33 ~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~- 111 (363)
T TIGR02326 33 YNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE- 111 (363)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC-
Confidence 34444445555555556422234799999999999999999998988877766655544 466788999999999853
Q ss_pred CCCCCCHHHHHhhccc--CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 212 ENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~~--~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
++.+|++.+++++++ +++++++++++||||..+| +++|.++|++| ++++|+|++++. |..+.++..
T Consensus 112 -~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---i~~I~~l~~~~-g~~livD~~~~~----g~~~~~~~~--- 179 (363)
T TIGR02326 112 -VEPPDVVEVEAILAADPAITHIALVHCETTTGILNP---IEAVAKLAHRH-GKVTIVDAMSSF----GGIPIDIAE--- 179 (363)
T ss_pred -CCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc---HHHHHHHHHHc-CCEEEEEccccc----cCcccchhh---
Confidence 455899999999874 4577888999999999999 89999999999 999999988763 222333333
Q ss_pred CCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHHHh------------------hcccCCCchHHHHHHHHHHhcC
Q 014172 290 MWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ------------------SQFTSGASSISQKAGVAALGLG 350 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~~~------------------~~~~~~~~~~~q~aa~~~l~~~ 350 (429)
.+..+++.|++|.+ |.+| +||++++++.++.+.... ....++++.+.+.++.++++.-
T Consensus 180 -~~~D~~~~s~~K~l~~p~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~~~al~~al~~l 256 (363)
T TIGR02326 180 -LHIDYLISSANKCIQGVPG--FGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHVVHAFAQALLEL 256 (363)
T ss_pred -cCccEEEecCccccccCCc--ceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHHHHHHHHHHHHH
Confidence 24458899999988 4445 799999998877653210 0122346777777777777541
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC---CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 351 ~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
. .+..+++..++++++++++++.|+++ |+++..+ .++...|+.++.... .+..++.+.|.++ ||.
T Consensus 257 ~-~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~L~~~-gi~ 324 (363)
T TIGR02326 257 E-KEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPD---------YRFADFYQRLKEQ-GFV 324 (363)
T ss_pred H-HhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCC---------CCHHHHHHHHHHC-CEE
Confidence 0 01236778899999999999999888 7776533 455667787764200 2567888887655 887
Q ss_pred c
Q 014172 428 L 428 (429)
Q Consensus 428 v 428 (429)
+
T Consensus 325 v 325 (363)
T TIGR02326 325 I 325 (363)
T ss_pred E
Confidence 6
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-22 Score=197.66 Aligned_cols=296 Identities=22% Similarity=0.284 Sum_probs=220.6
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---CC--CCCCCC----CCHHHHHHHHHHHHhhcCCCCC-CCcEEEecC
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FT--RYTPNA----GTLELRSAICHKLKEENGLSYT-PDQILVSNG 163 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~---~~--~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~-~~~i~~t~G 163 (429)
+++.+.|....... .|..+++++.+.+... .+ .|.... -+.+.|+.++++++ .+ .++|++|.|
T Consensus 20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~------a~~~~eIvft~~ 92 (405)
T COG0520 20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN------ADSSDEIVFTRG 92 (405)
T ss_pred CCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEeCC
Confidence 56788988877665 6899999999887532 11 121111 23456666666664 35 489999999
Q ss_pred hHHHHHHHHHHh---cCCCCEEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 164 AKQSILQAVLAV---CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 164 ~~~al~~~l~~l---~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
+|++|+++..++ ..+||+|++.+--|++ +...++..|++++.+|++ +++.++.+.+++.++++||+|.+++
T Consensus 93 tT~aln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~--~~g~~~~~~~~~~i~~~Tklvais~ 170 (405)
T COG0520 93 TTEALNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD--DDGLLDLDALEKLITPKTKLVALSH 170 (405)
T ss_pred hhHHHHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecC--CCCCcCHHHHHHhcCCCceEEEEEC
Confidence 999999999998 6899999999988875 445666779999999997 3456899999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh-hcccccceeeEEE
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK-AFAMTGWRLGYIA 315 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK-~~~~~G~R~G~v~ 315 (429)
.+|.||.+.| +++|+++|+++ |+++++|.+++. ++.+..+.. .+..+++.|.+| .+|..| +|.++
T Consensus 171 vSn~tG~~~p---v~~I~~la~~~-ga~v~VDaaq~~----~h~~idv~~----l~~Df~afsgHKwl~gP~G--iGvLy 236 (405)
T COG0520 171 VSNVTGTVNP---VKEIAELAHEH-GALVLVDAAQAA----GHLPIDVQE----LGCDFLAFSGHKWLLGPTG--IGVLY 236 (405)
T ss_pred ccccccccch---HHHHHHHHHHc-CCEEEEECcccc----CccCCCchh----cCCCEEEEcccccccCCCc--eEEEE
Confidence 9999999999 99999999999 999999999876 444444444 356699999999 556335 89999
Q ss_pred cCHHHHHHHHHHh---------------------hcccCC-CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 014172 316 GPKHFVAACNKIQ---------------------SQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 316 ~~~~~~~~l~~~~---------------------~~~~~~-~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (429)
+.+++.+.+.... ..+..+ ++.....++.++++.- .+..++++.++-++..+++.+
T Consensus 237 ~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~--~~ig~~~i~~~e~~L~~~~~~ 314 (405)
T COG0520 237 VRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYL--LEIGMEAIEAHERELTEYLLE 314 (405)
T ss_pred EchHHHhhcCCcccCCCceeeecccccccccCcchhhccCCchHHHHHhHHHHHHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 9999988762110 111222 3333334434455430 123356778888889999999
Q ss_pred HhccCCCceeecCC----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 374 SFGELEGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 374 ~L~~l~g~~~~~p~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|+++|++++..|. ++. +.+.+++. ...+++..|-++ ||++
T Consensus 315 ~L~~~~~v~i~g~~~~~r~~~-vsF~v~~~------------~~~dv~~~L~~~-gI~v 359 (405)
T COG0520 315 GLSELPGVEIYGPPDADRGGI-VSFNVKGI------------HPHDVATLLDEK-GIAV 359 (405)
T ss_pred HHhcCCCeEEecCCcccCceE-EEEEeCCC------------CHHHHHHHHHhC-CeEE
Confidence 99999999998654 444 66777653 688999988776 6875
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=189.46 Aligned_cols=319 Identities=16% Similarity=0.172 Sum_probs=231.9
Q ss_pred cCCCeEEcCCCC--CCCCCh---HHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcE--EEecC
Q 014172 93 AGVSVIRLAAGE--PDFDTP---VLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSNG 163 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~p---~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i--~~t~G 163 (429)
..+..++|+.|. .+-..| |.|.++-.....+ -.+.|-|-.|.+.++++.++.+-......+..+++ +.+-+
T Consensus 28 ~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~kE~Rv~~vQsls 107 (410)
T KOG1412|consen 28 LDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADSPAIKEDRVFGVQSLS 107 (410)
T ss_pred CCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcCCCchhhhhccccceeecc
Confidence 345678888886 222222 3343333332221 24679999999999999999874333333455665 46678
Q ss_pred hHHHHHHHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCC-EEEEecCCCCCCCCCCHHHHHhhcccCC--cEEEEcC-C
Q 014172 164 AKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADA-TPVILPTRISENFLLDPKVLESKLTEKS--RLLILCS-P 237 (429)
Q Consensus 164 ~~~al~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~e~l~~~l~~~~--~~i~l~~-p 237 (429)
+|.++......+- -...+|.+..|+|.++..+++.+|. ++..++.-..++-.+|++.+...|+..+ ..++++. .
T Consensus 108 GTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCA 187 (410)
T KOG1412|consen 108 GTGALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACA 187 (410)
T ss_pred ccchhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccc
Confidence 8888886655442 1346799999999999999999994 5556665444566789999998887532 3344433 4
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC--CCCccccCCCCCCceEEEeccChhcccccceeeEEE
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~--~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~ 315 (429)
|||||...++|+|.+|+++.+++ +++.+.|-+|.+|.-++- ..+.+..+.......+++.||+|.||+.+-|+|.+.
T Consensus 188 hNPTGmDPT~EQW~qia~vik~k-~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnlt 266 (410)
T KOG1412|consen 188 HNPTGMDPTREQWKQIADVIKSK-NLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLT 266 (410)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhc-CceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceE
Confidence 99999999999999999999999 999999999999876642 223334444434568999999999999999999864
Q ss_pred c---CHHH----HHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHH---HHHHHHHHHHHHHHHHHHhccC--CC-ce
Q 014172 316 G---PKHF----VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGEL--EG-VK 382 (429)
Q Consensus 316 ~---~~~~----~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~---~~~~~~~~~~~r~~l~~~L~~l--~g-~~ 382 (429)
. ++.. ..++..+.+...++|+..+..++...|+.+...++| ++.+..++++.|..+++.|..+ || |.
T Consensus 267 vv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWD 346 (410)
T KOG1412|consen 267 VVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWD 346 (410)
T ss_pred EEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH
Confidence 3 3333 344555566677889999999999999876555566 4456778899999999999887 56 66
Q ss_pred eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 383 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
....+.|||-+..+. ..-++.|.+++.|++
T Consensus 347 HI~~QiGMFSyTGLt----------------p~qV~~li~~h~vyL 376 (410)
T KOG1412|consen 347 HITQQIGMFSYTGLT----------------PAQVDHLIENHKVYL 376 (410)
T ss_pred HHHhhccceeecCCC----------------HHHHHHHHHhceEEE
Confidence 667899999876653 356778888888764
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=205.45 Aligned_cols=218 Identities=13% Similarity=0.163 Sum_probs=165.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~ 205 (429)
+++...+|++.+|++++ .+..++++++++++..++.+++++||+|+++.|.|.... ..+...|++++.
T Consensus 57 ~~p~~~~le~~lA~l~g--------~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~ 128 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLEG--------TEAAVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDF 128 (391)
T ss_pred CCchHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEE
Confidence 34456789999998863 234678888889999999999999999999999887543 445668999999
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++.+ |++.+++++++++++|++++|+||+|.+.+ +++|.++|+++ |+++|+|++|....+. .++
T Consensus 129 vd~~-------d~e~l~~~i~~~tklV~le~p~Np~G~v~d---l~~I~~la~~~-gi~livD~a~a~~~~~----~~~- 192 (391)
T TIGR01328 129 INMA-------IPEEVKAHIKDNTKIVYFETPANPTMKLID---MERVCRDAHSQ-GVKVIVDNTFATPMLT----NPV- 192 (391)
T ss_pred ECCC-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCchhccC----Cch-
Confidence 8862 799999999999999999999999999999 88999999999 9999999999864321 111
Q ss_pred cCCCCCCceEEEeccChhcccccce-eeEEEcCHHHHHHHHHHhh--cccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R-~G~v~~~~~~~~~l~~~~~--~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
. .+..+++.|++|.++.+|.+ .|++++++++++.++.... ..+...+.+....+...|+ .+..+.+
T Consensus 193 ~----~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~-------tl~~r~~ 261 (391)
T TIGR01328 193 A----LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLK-------TLNIRMK 261 (391)
T ss_pred h----cCCCEEEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcC-------cHHHHHH
Confidence 1 23448999999999988877 5778888998888875432 2233445544444443332 2445567
Q ss_pred HHHHHHHHHHHHhccCCCce
Q 014172 363 AFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~ 382 (429)
+.+++...+.+.|++.|+++
T Consensus 262 ~~~~na~~la~~L~~~p~v~ 281 (391)
T TIGR01328 262 RHSENAMKVAEYLKSHPAVE 281 (391)
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 77788888888888877764
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-22 Score=199.03 Aligned_cols=277 Identities=19% Similarity=0.235 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCC
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 189 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~y 189 (429)
++-.+++.+.+.++...++ +...+|+++++++++ .++++.++|+++++.+++.++ +++||+|+++.|+|
T Consensus 14 ~~e~~~~~~~l~~~~~~~g--~~~~~le~~la~~~g--------~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~ 83 (379)
T PRK11658 14 DEELAAVKEVLRSGWITTG--PKNQALEQAFCQLTG--------NQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTW 83 (379)
T ss_pred HHHHHHHHHHHHcCCccCC--HhHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcH
Confidence 5557788888877655443 357899999999874 246888999999999999999 89999999999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 014172 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (429)
Q Consensus 190 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~De 269 (429)
..+...+...|++++.+++++ +++.+|++.+++++++++|+|+ |+||+|...+ +++|.++|++| |++||+|+
T Consensus 84 ~~~~~~~~~~G~~~v~vd~~~-~~~~~d~~~l~~~i~~~tkav~---~~~~~G~~~d---~~~i~~~a~~~-gi~vi~D~ 155 (379)
T PRK11658 84 VSTLNMIVLLGATPVMVDVDR-DTLMVTPEAIEAAITPRTKAII---PVHYAGAPAD---LDAIRAIGERY-GIPVIEDA 155 (379)
T ss_pred HHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcccCCeEEE---EeCCCCCcCC---HHHHHHHHHHc-CCeEEEEC
Confidence 999999999999999999875 4477899999999999999887 6778999988 88999999999 99999999
Q ss_pred CCccc-ccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhccc---------------
Q 014172 270 IYEHI-IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT--------------- 332 (429)
Q Consensus 270 ay~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~--------------- 332 (429)
+|+.. .+.+.. +.. .+ +.+.||++...+++++.|+++++ +++.+.++.......
T Consensus 156 a~a~g~~~~~~~---~g~----~g--~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 226 (379)
T PRK11658 156 AHAVGTYYKGRH---IGA----RG--TAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQ 226 (379)
T ss_pred CCccCCeECCee---cCC----CC--CEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCc
Confidence 99853 333321 111 12 24677876666678889998874 777777765432110
Q ss_pred -------CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC----ceEEEE-EecCCcc
Q 014172 333 -------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLF-IDFSTYY 400 (429)
Q Consensus 333 -------~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~----~~~~~~-~~l~~~~ 400 (429)
.+.......|++.... .+.+++..++.++..+.+.+.|+++++..+..|. .+++++ +.++...
T Consensus 227 ~~~~~~G~n~~~~~l~AAl~~~q-----l~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (379)
T PRK11658 227 AEVLTPGYKYNLADINAAIALVQ-----LAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEER 301 (379)
T ss_pred ceeeccccccCcCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcc
Confidence 0000111223333332 2446677777777788888888887543333222 223332 4443210
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. ..+..++.++|.++ ||.+
T Consensus 302 ----~----~~~r~~~~~~L~~~-gI~~ 320 (379)
T PRK11658 302 ----C----GISRDALMEALKER-GIGT 320 (379)
T ss_pred ----c----cCCHHHHHHHHHHC-CCCC
Confidence 0 02578899988665 8753
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-22 Score=201.40 Aligned_cols=288 Identities=16% Similarity=0.142 Sum_probs=196.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC
Q 014172 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~ 186 (429)
.++++.+.+++.... ..+.+ ...+..+.+.+.+.+..|.+-+.+.|++++|+++++..++.++..+||.|++..
T Consensus 14 ~~~~~~~~~a~~~~~----~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~ 87 (368)
T PRK13479 14 LTTSRTVREAMLRDW----GSWDD--DFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLVPRDGKVLVPD 87 (368)
T ss_pred CCCCHHHHHHhCCCC----CCCCh--HHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhccCCCCeEEEEe
Confidence 344566666655432 12211 122344444444444455322235688999999999999999999999999998
Q ss_pred CCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc--CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC
Q 014172 187 PFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (429)
Q Consensus 187 p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~--~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~ 262 (429)
++|.+. ...++..|++++.++.+. ++.+|++++++++++ +++++++++|+||||...| +++|.++|+++ +
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~---~~~i~~l~~~~-~ 161 (368)
T PRK13479 88 NGAYGARIAQIAEYLGIAHVVLDTGE--DEPPDAAEVEAALAADPRITHVALVHCETTTGILNP---LDEIAAVAKRH-G 161 (368)
T ss_pred CCchHHHHHHHHHHcCCcEEEEECCC--CCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccC---HHHHHHHHHHc-C
Confidence 887766 377888999999999863 345899999998864 4678889999999999999 88999999999 9
Q ss_pred eEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHHHhh------------
Q 014172 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQS------------ 329 (429)
Q Consensus 263 i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~~~~------------ 329 (429)
+++|+|+++.. +..+.++.. ++..+++.|++|.+ |++| +||+++++++++.+.....
T Consensus 162 ~~livDa~~~~----g~~~~~~~~----~~~d~~v~s~~K~l~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T PRK13479 162 KRLIVDAMSSF----GAIPIDIAE----LGIDALISSANKCIEGVPG--FGFVIARRSELEACKGNSRSLSLDLYDQWAY 231 (368)
T ss_pred CEEEEEccccc----CCccccccc----cCceEEEecCccccccCCC--ceEEEECHHHHHHhhcCCCCeeecHHHHHhh
Confidence 99999966543 222223222 23447788999976 6666 6999999998877654321
Q ss_pred -----cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC---ceEEEEEecCCccC
Q 014172 330 -----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYG 401 (429)
Q Consensus 330 -----~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~---~~~~~~~~l~~~~~ 401 (429)
...++++.+.+.++.++++.-. .+.++++..++++++++.+.+.|+++ |+++..+. .+..+.+.++..
T Consensus 232 ~~~~~~~~~t~~~~~~~~l~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-- 307 (368)
T PRK13479 232 MEKTGQWRFTPPTHVVAAFYQALLELE-EEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPAD-- 307 (368)
T ss_pred hcccCCCCCCCcHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCC--
Confidence 1112456666666666665310 12246777889999999999999998 87765332 222233333321
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
...+..++.++|.++ ||.|
T Consensus 308 -------~~~~~~~l~~~L~~~-gi~v 326 (368)
T PRK13479 308 -------PAYDFKEFYERLKEQ-GFVI 326 (368)
T ss_pred -------CCcCHHHHHHHHHHC-CEEE
Confidence 002567899998776 8876
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-23 Score=204.24 Aligned_cols=219 Identities=15% Similarity=0.173 Sum_probs=166.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~ 205 (429)
+.+...+|++.++++++ .+..+++++++.++.+++.+++++||+|+++.|.|.... ..++..|++++.
T Consensus 63 ~~p~~~~le~~lA~l~g--------~~~~i~~~sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~ 134 (403)
T PRK07503 63 SNPTLALLEQRMASLEG--------GEAAVALASGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRH 134 (403)
T ss_pred CCchHHHHHHHHHHHhC--------CCcEEEEcCHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEE
Confidence 34456788888888763 234567777888999999999999999999999987633 345678999999
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++.. |++.+++++++++|+|++++|+||||.+.+ +++|.++|++| |+++|+|++|...... .++
T Consensus 135 vd~~-------d~~~l~~~i~~~tklV~le~p~NPtG~~~d---i~~I~~la~~~-gi~lIvD~a~a~~~~~----~~l- 198 (403)
T PRK07503 135 VDLT-------DPAALKAAISDKTRMVYFETPANPNMRLVD---IAAVAEIAHGA-GAKVVVDNTYCTPYLQ----RPL- 198 (403)
T ss_pred eCCC-------CHHHHHHhcCccCcEEEEeCCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch-
Confidence 8862 799999999999999999999999999999 89999999999 9999999999864321 111
Q ss_pred cCCCCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH--hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
. .+..+++.|++|.++.+| .|.||++.++++++.++.. ....+.+.+.+.+..+...|+ .+..+.+
T Consensus 199 ~----~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~-------tl~~r~~ 267 (403)
T PRK07503 199 E----LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLK-------TLALRMD 267 (403)
T ss_pred h----hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcc-------hHHHHHH
Confidence 1 234599999999998665 7889999989888887633 444455566666554444333 3555556
Q ss_pred HHHHHHHHHHHHhccCCCcee
Q 014172 363 AFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+..++...+.+.|++.|.+++
T Consensus 268 ~~~~na~~~a~~L~~~p~v~~ 288 (403)
T PRK07503 268 RHCASAQAVAEWLARHPAVEL 288 (403)
T ss_pred HHHHHHHHHHHHHHhCCCccE
Confidence 666788888888888776553
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=193.01 Aligned_cols=281 Identities=17% Similarity=0.237 Sum_probs=187.0
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH--HHHh----cC---C-----CCEEEEcCCCC
Q 014172 125 FTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA--VLAV----CS---P-----GDEVIIPAPFW 189 (429)
Q Consensus 125 ~~~Y-~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~--l~~l----~~---~-----gd~Vlv~~p~y 189 (429)
.-+| +...|.+++|+..++.+. +++++|++..+++-.|..- .+++ .+ | .=+.|+|.|.|
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~llg------v~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGY 134 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELLG------VPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGY 134 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHHT------S-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--
T ss_pred ccCCCCccCChHHHHHHHHHHhC------CCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCc
Confidence 3579 888999999999999985 6889999988776555322 1221 21 1 12689999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc--cCCcEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEE
Q 014172 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266 (429)
Q Consensus 190 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~--~~~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi 266 (429)
.-+..+++.+|.+.+.||+.+++ +|.|.+++.+. +..|.|| ++.-+||||.+|+.|.+++++.+-..-||+.|+
T Consensus 135 DRHFai~E~~Giemi~VpM~~dG---PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~ 211 (425)
T PF12897_consen 135 DRHFAITEHFGIEMIPVPMTEDG---PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF 211 (425)
T ss_dssp HHHHHHHHHCT-EEEEEEEETTE---E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred hHHHHHHHhhCcEEEecCCCCCC---CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence 99999999999999999997654 89999999984 4678887 577799999999999999999983333599999
Q ss_pred EccCCccccc-CCCCCC---cccc---CCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHH
Q 014172 267 SDEIYEHIIY-APATHT---SFAS---LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSIS 339 (429)
Q Consensus 267 ~Deay~~~~~-~~~~~~---~~~~---~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~ 339 (429)
.|++|..-.+ +..... .+.. -.+..++++.+.|.||.- .+|.+++++.++++-++.+.+.....+.++.-+.
T Consensus 212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKIT-f~GaGva~~aaS~~Nl~~~~~~~~~~tIgpdKvN 290 (425)
T PF12897_consen 212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKIT-FPGAGVAFFAASEANLAWIKKHLSVQTIGPDKVN 290 (425)
T ss_dssp EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS--TTSS-EEEEE-HHHHHHHHHHHHHH-S---HHH
T ss_pred eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccc-cCCcceeeeecCHHHHHHHHHHhcCceeCccHHH
Confidence 9999994333 222111 2222 245579999999999987 5999999999999999999988888888999999
Q ss_pred HHHHHHHHhcCC-CChHHHHHHHHHHHHHHHHHHHHhcc-CC---C-ceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 340 QKAGVAALGLGY-AGGEVVSKMVKAFRERRDFLVKSFGE-LE---G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 340 q~aa~~~l~~~~-~~~~~~~~~~~~~~~~r~~l~~~L~~-l~---g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
|..-..++.+.. ..+.++++.++.++-+.+.+.+.|++ +. | .+|..|.||||+++++.+. .+
T Consensus 291 QLRHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~P~GGYFIsld~~~G------------~A 358 (425)
T PF12897_consen 291 QLRHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTKPKGGYFISLDVLDG------------TA 358 (425)
T ss_dssp HHHHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE---SBSS-EEEEESTT-------------H
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecCCCCceEEEEecCCC------------hH
Confidence 999999998722 12456677777777777777777765 43 3 5899999999999999863 45
Q ss_pred HHHHHHHHHhCCeec
Q 014172 414 ESLCRYLLDKAQVLL 428 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v 428 (429)
.++.+ |.++.||.+
T Consensus 359 krvV~-lakeAGV~L 372 (425)
T PF12897_consen 359 KRVVE-LAKEAGVAL 372 (425)
T ss_dssp HHHHH-HHHHTTEE-
T ss_pred HHHHH-HHHHhCcee
Confidence 66665 456679975
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=200.95 Aligned_cols=218 Identities=15% Similarity=0.188 Sum_probs=172.0
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~ 205 (429)
.++...+|++.++++++ .+.+++++++++++..++.+++++||+|+++.+.|.+... .++..|++++.
T Consensus 38 ~~p~~~~le~~la~l~g--------~~~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~ 109 (369)
T cd00614 38 GNPTVDALEKKLAALEG--------GEAALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTF 109 (369)
T ss_pred CChhHHHHHHHHHHHHC--------CCCEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEE
Confidence 44556778888887753 2467888888999999999999999999999999988654 34577999988
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++.+ |++.+++++++++++|++.+|+||+|.+.+ +++|+++|++| |+++|+|++|....+. .++
T Consensus 110 v~~~-------d~~~l~~~i~~~~~~v~~e~~~np~g~~~d---l~~i~~la~~~-g~~livD~t~~~~~~~----~~~- 173 (369)
T cd00614 110 VDPD-------DPEALEAAIKPETKLVYVESPTNPTLKVVD---IEAIAELAHEH-GALLVVDNTFATPYLQ----RPL- 173 (369)
T ss_pred eCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcchhcC----Chh-
Confidence 8752 689999999889999999999999999999 88999999999 9999999999864331 111
Q ss_pred cCCCCCCceEEEeccChhccccc-ceeeEEEcCH-HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~-~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
..+.++++.|++|.++.+| .+.||+++++ ++++.+.......+.+.+.+.+.++...|+ .+....++
T Consensus 174 ----~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~-------tl~~r~~~ 242 (369)
T cd00614 174 ----ELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLK-------TLPLRMER 242 (369)
T ss_pred ----hhCCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCC-------CHHHHHHH
Confidence 1345699999999997665 7899999977 888888877666666667666555544443 24456677
Q ss_pred HHHHHHHHHHHhccCCCce
Q 014172 364 FRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~ 382 (429)
..++...+.+.|++.|++.
T Consensus 243 ~~~na~~la~~L~~~~~v~ 261 (369)
T cd00614 243 HSENALKVAEFLEKHPKVE 261 (369)
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 7888889999999887664
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=198.94 Aligned_cols=281 Identities=19% Similarity=0.160 Sum_probs=194.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCC---CCC------CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC-
Q 014172 108 DTPVLIAEAGINAIREGFTRYTP---NAG------TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS- 177 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~---~~G------~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~- 177 (429)
++|+.+.+++.+.+......... ..+ ..++|+.++++ .| .++++|++|+|+++++..++.++..
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~g--~~~~~v~~~~g~t~a~~~~l~~l~~~ 82 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEA----LG--ADTEEVIFTSGATESNNLAILGLARA 82 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 45788999998887542211111 111 23455555554 45 4678999999999999999888763
Q ss_pred ---CC-CEEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHH
Q 014172 178 ---PG-DEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 178 ---~g-d~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
+| +.|++....|+++.. .++..|++++.++++. ++.+|++++++.+++++++|++++++||||.+++ +
T Consensus 83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~---~ 157 (353)
T TIGR03235 83 GEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRPDTLLVSIMHVNNETGSIQP---I 157 (353)
T ss_pred cccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCCCCEEEEEEcccCCceeccC---H
Confidence 56 788888877776544 3455799999999863 4568999999999888999999999999999999 8
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH--HHHH-
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA--CNKI- 327 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~--l~~~- 327 (429)
++|.++|+++ |+++|+|++++... ....+. .++..+++.|++|.+|.+| +|+++++++.... +...
T Consensus 158 ~~I~~l~~~~-~~~~ivD~a~~~g~----~~~~~~----~~~~D~~~~s~~K~~gp~g--~g~l~~~~~~~~~~~~~~~~ 226 (353)
T TIGR03235 158 REIAEVLEAH-EAFFHVDAAQVVGK----ITVDLS----ADRIDLISCSGHKIYGPKG--IGALVIRKRGKPKAPLKPIM 226 (353)
T ss_pred HHHHHHHHHc-CCEEEEEchhhcCC----cccccc----ccCCCEEEeehhhcCCCCc--eEEEEEccCcccccccCcee
Confidence 9999999999 99999999987522 111221 1345688889999887556 8999888764322 1110
Q ss_pred ------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC-ce--EEEEEecCC
Q 014172 328 ------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GA--FYLFIDFST 398 (429)
Q Consensus 328 ------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~-~~--~~~~~~l~~ 398 (429)
.......++.....++.++++. ..+.+++..++++++++++++.|++ +|+++..+. .. -.+.+.+++
T Consensus 227 ~~~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~ 302 (353)
T TIGR03235 227 FGGGQERGLRPGTLPVHLIVGMGEAAEI---ARRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDG 302 (353)
T ss_pred eCCCCcCccccCCCChHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCC
Confidence 0011223445555566666664 2456778889999999999999988 598876432 21 124444453
Q ss_pred ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 399 YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. +..++...| ++ +|.|
T Consensus 303 ~------------~~~~v~~~L-~~-~i~v 318 (353)
T TIGR03235 303 V------------NSEALIVNL-RA-DAAV 318 (353)
T ss_pred c------------CHHHHHHHH-hC-CeEE
Confidence 2 567777777 44 6665
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=200.40 Aligned_cols=218 Identities=12% Similarity=0.108 Sum_probs=162.5
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 205 (429)
+.+...+|++++|++.+ .+..++++++++++.+++.+++++||+|+++.|+|......+. ..|++++.
T Consensus 59 ~~p~~~~Le~~lA~~~g--------~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~ 130 (388)
T PRK07811 59 GNPTRTALEEQLAALEG--------GAYGRAFSSGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTP 130 (388)
T ss_pred CCccHHHHHHHHHHHhC--------CCceEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEE
Confidence 55678899999999874 1233555666899999999999999999999999986543332 35888877
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++. .|++++++++++++|+|++++|+||||.+.+ +++|.++|+++ |++||+|++|....+. .++
T Consensus 131 ~d~-------~d~e~l~~~i~~~tklV~ie~p~NPtg~~~d---l~~I~~la~~~-gi~lIvD~a~a~~~~~----~p~- 194 (388)
T PRK07811 131 VDL-------SDLDAVRAAITPRTKLIWVETPTNPLLSITD---IAALAELAHDA-GAKVVVDNTFASPYLQ----QPL- 194 (388)
T ss_pred eCC-------CCHHHHHHhcCcCCeEEEEECCCCCcceecC---HHHHHHHHHHc-CCEEEEECCCCccccC----Cch-
Confidence 764 3899999999999999999999999999988 99999999999 9999999999864321 111
Q ss_pred cCCCCCCceEEEeccChhccccc-ceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
. .+..+++.|++|.++.+| .+.||++++ +++.+.+...........+......+...|+ .+..+.++
T Consensus 195 ~----~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~-------tl~~R~~~ 263 (388)
T PRK07811 195 A----LGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLK-------TLAVRMDR 263 (388)
T ss_pred h----hCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccC-------cHHHHHHH
Confidence 1 234499999999998544 568998875 6676766655554444455554333333333 25556666
Q ss_pred HHHHHHHHHHHhccCCCce
Q 014172 364 FRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~ 382 (429)
..++...+.+.|++.|+++
T Consensus 264 ~~~na~~la~~L~~~p~v~ 282 (388)
T PRK07811 264 HSENAEAVAEFLAGHPEVS 282 (388)
T ss_pred HHHHHHHHHHHHHhCCCee
Confidence 6778888888888887764
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=199.21 Aligned_cols=221 Identities=15% Similarity=0.165 Sum_probs=171.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 201 (429)
.+| +++....|++++|++. ..+++++++|+++++.+++.+++++||.|+++.|+|.+.... ....|+
T Consensus 48 ~R~-~npt~~~Le~~lA~le--------g~e~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi 118 (388)
T PRK08861 48 TRS-GNPNRGLLEQTLSELE--------SGKGAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF 118 (388)
T ss_pred cCC-CCchHHHHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence 445 4556788999999886 347999999999999999999999999999999999864332 234577
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~ 281 (429)
+++.++. .|++.+++++++++++|++++|+||||.+++ +++|.++|+++ ++++|+|++|....+.
T Consensus 119 ~v~~vd~-------~d~e~l~~~i~~~tklV~lesP~NPtG~v~d---l~~I~~la~~~-gi~vIvDea~~~~~~~---- 183 (388)
T PRK08861 119 KVQFVDQ-------SDAAALDAALAKKPKLILLETPSNPLVRVVD---IAELCQKAKAV-GALVAVDNTFLTPVLQ---- 183 (388)
T ss_pred EEEEECC-------CCHHHHHHhcCcCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCccccccC----
Confidence 8888762 4899999999989999999999999999999 88899999999 9999999999864322
Q ss_pred CccccCCCCCCceEEEeccChhccc-ccceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~~-~G~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
.++ . .+..+++.|++|.++- .+...|++++. +++.+.++......+.+.+++....+...|+. +.-
T Consensus 184 ~pl-~----~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~T-------l~l 251 (388)
T PRK08861 184 KPL-E----LGADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRT-------LGA 251 (388)
T ss_pred CCc-c----cCCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCC-------HHH
Confidence 111 1 2345999999999863 34678998874 56777777776666667777775544444433 555
Q ss_pred HHHHHHHHHHHHHHHhccCCCce
Q 014172 360 MVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
+.++..++...+.+.|++.|.++
T Consensus 252 R~~~~~~~a~~~a~~L~~~p~v~ 274 (388)
T PRK08861 252 RMRVHEESAQQILAYLQTQSLVG 274 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCee
Confidence 66777778888888888877654
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=199.51 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCC-----CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc---CCC
Q 014172 108 DTPVLIAEAGINAIREGFTRYTPNAG-----TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC---SPG 179 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G-----~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~---~~g 179 (429)
++|+.+++++.+.+... ..+..... ..+..+.+.+.+.+.+| .++++|++|+|+++++..++..++ .+|
T Consensus 10 ~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~i~~t~~~t~a~~~al~~~~~~~~~~ 86 (379)
T TIGR03402 10 RVDPEVLEAMLPYFTEY-FGNPSSMHSFGGEVGKAVEEAREQVAKLLG--AEPDEIIFTSGGTESDNTAIKSALAAQPEK 86 (379)
T ss_pred CCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCcHHHHHHHHHHHHHHhcCCC
Confidence 35678999998877642 22322111 12233333344555556 457899999999999999888764 456
Q ss_pred CEEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHH
Q 014172 180 DEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (429)
Q Consensus 180 d~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~ 256 (429)
|.|++....|+++.. .++..|++++.++.+. ++.+|++++++.++++++++++++++||||.++| +++|.++
T Consensus 87 ~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~---~~~I~~l 161 (379)
T TIGR03402 87 RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITDDTALVSVMWANNETGTIFP---IEEIGEI 161 (379)
T ss_pred CeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCCCcEEEEEEcccCCeeeccc---HHHHHHH
Confidence 899999988877654 3445699999999853 3568999999999999999999999999999999 7889999
Q ss_pred HHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHH--HHHH--H-Hhhcc
Q 014172 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV--AACN--K-IQSQF 331 (429)
Q Consensus 257 a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~--~~l~--~-~~~~~ 331 (429)
|++| |+++++|++++. |..+..+.. .+..+++.|.+|.+|.+| +|+++..++.. ..+. . .....
T Consensus 162 ~~~~-g~~vivD~~~~~----g~~~~~~~~----~~~D~~~~s~~K~~gp~G--~g~l~v~~~~~~~p~~~g~~~~~~~~ 230 (379)
T TIGR03402 162 AKER-GALFHTDAVQAV----GKIPIDLKE----MNIDMLSLSGHKLHGPKG--VGALYIRKGTRFRPLLRGGHQERGRR 230 (379)
T ss_pred HHHc-CCEEEEECcccc----cccccCccc----CCCCEEEEcHHHcCCCCc--eEEEEECCCCCCCCcccCCccCCCcC
Confidence 9999 999999999975 322223322 244578888889777556 78887665431 0000 0 00011
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCC-----ceEEEEEecCCccCCccc
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQ-----GAFYLFIDFSTYYGSEAE 405 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~-----~~~~~~~~l~~~~~~~~~ 405 (429)
..+++.....++.++++. ..++++...++++++++.+.+.|.+ ++++++..+. +.+.+|+ +.
T Consensus 231 ~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~------- 298 (379)
T TIGR03402 231 AGTENVPGIVGLGKAAEL---ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISF--EY------- 298 (379)
T ss_pred CCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEe--cC-------
Confidence 234555666666677765 3567888888999999999999986 8888876542 1233343 32
Q ss_pred CCCCCCChHHHHHHHHHhCCeec
Q 014172 406 GFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 406 ~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++...| ++.||.|
T Consensus 299 -----~~~~~~~~~l-~~~gI~v 315 (379)
T TIGR03402 299 -----IEGEAILLLL-DMEGICA 315 (379)
T ss_pred -----CCHHHHHHhh-ccCCEEE
Confidence 1567888876 5558876
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-22 Score=195.50 Aligned_cols=287 Identities=16% Similarity=0.195 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc------CCCCEEEE
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC------SPGDEVII 184 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~------~~gd~Vlv 184 (429)
+.+.+++...+......-....|..++.+.+.+.+++.+| .++.++++++|+++++..++.+++ ++||+|++
T Consensus 34 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~ 111 (373)
T TIGR03812 34 PIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLH--LPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV 111 (373)
T ss_pred HHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhC--CCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 4456666655443211111113455666666666766667 356788999999999988877664 46799999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeE
Q 014172 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264 (429)
Q Consensus 185 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~ 264 (429)
++++|.++...++..|++++.++.+ .++.+|++++++.+++++..+++.+|+||||.+.+ +++|.++|+++ +++
T Consensus 112 ~~~~h~~~~~~~~~~G~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~---~~~i~~l~~~~-~~~ 185 (373)
T TIGR03812 112 PESAHFSFEKAAEMLGLELRYAPLD--EDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDD---IEELSKIALEN-GIY 185 (373)
T ss_pred CCcchHHHHHHHHHcCCeEEEEeeC--CCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCC---HHHHHHHHHHc-CCe
Confidence 9999999999999999999999986 34678999999999887765555558999999998 88999999999 999
Q ss_pred EEEccCCcccccC--C--CCCCccccCCCCCCceEEEeccChhcccccceeeEEE-cCHHHHHHHHHHhhccc-------
Q 014172 265 VLSDEIYEHIIYA--P--ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFT------- 332 (429)
Q Consensus 265 vi~Deay~~~~~~--~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~-~~~~~~~~l~~~~~~~~------- 332 (429)
+|+|++|..+... . .....+ .+. ..+-..+..|.+| +++++.|.|+++ .++++++.+... ..+.
T Consensus 186 livD~a~~~~~~~~~~~~~~~~~~-d~~-~~~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~~~-~~~~~~~~~~~ 261 (373)
T TIGR03812 186 LHVDAAFGGFVIPFLKKGYNPPPF-DFS-LPGVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLSVD-APYLTVKKQAT 261 (373)
T ss_pred EEEEcCchhHHHHHHhcCCCCCCc-ccc-CCCCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhccc-CcccCCCCCcc
Confidence 9999999865321 0 000000 010 0122245567789 656778888665 577777766421 1111
Q ss_pred --CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEEEecCCccCCcccCCCC
Q 014172 333 --SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGK 409 (429)
Q Consensus 333 --~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~~~l~~~~~~~~~~~~~ 409 (429)
...+.....++..+++. ..++.+++..++..++++++.+.|+++ |+. +..|..+ ++.+.++
T Consensus 262 ~~gt~~~~~~~~~~~~l~~--l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~v~~~~~------------ 325 (373)
T TIGR03812 262 ITGTRSGASAAATYAVIKY--LGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLN-IVAFEVD------------ 325 (373)
T ss_pred eEeechhHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCce-EEEEEeC------------
Confidence 12234455555566653 125667888899999999999999998 554 4445554 4667665
Q ss_pred CCChHHHHHHHHHhCCeec
Q 014172 410 IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 410 ~~~~~~~~~~Ll~~~gV~v 428 (429)
+..++.++|.++ ||.|
T Consensus 326 --~~~~v~~~L~~~-gi~v 341 (373)
T TIGR03812 326 --DPEEVRKKLRDR-GWYV 341 (373)
T ss_pred --CHHHHHHHHHHC-Ccee
Confidence 345788888776 8876
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=202.95 Aligned_cols=300 Identities=14% Similarity=0.133 Sum_probs=203.5
Q ss_pred cCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|...... +|.+.+++.+.+.+..... ..-..+....+++.+.+..| .+.+++++++++++.
T Consensus 39 ~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~A~e 112 (401)
T PRK00854 39 DGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTS--RAFRNDQLAPLYEELAALTG----SHKVLPMNSGAEAVE 112 (401)
T ss_pred CCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccc--cccCCHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHH
Confidence 57788998887654444 7889999999887532111 10112334444444444333 358999999999999
Q ss_pred HHHHHhcC---------CC-CEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 170 QAVLAVCS---------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 170 ~~l~~l~~---------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+++++.. +| ++|++..-+|.+....+...+. .+..++. .|++.+++.+.
T Consensus 113 ~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~i~ 185 (401)
T PRK00854 113 TAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEALEAAIT 185 (401)
T ss_pred HHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 99988842 24 6788888777765433332221 2223321 38999999998
Q ss_pred cCCcEEEEcCCCCCccCCCCHH-HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~-~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
+++++|++++|+||+|.+++++ .+++|.++|++| |+++|+||+|.++.+.|... ......-..+ +++ ++|.++
T Consensus 186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~-gi~lI~DEv~~g~g~~g~~~-~~~~~g~~~D--~~~--~~K~l~ 259 (401)
T PRK00854 186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN-NVTLILDEIQTGLGRTGKLL-AEEHEGIEAD--VTL--IGKALS 259 (401)
T ss_pred CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCchHh-HHhhcCCCCC--EEE--eccccc
Confidence 8999999999999999999854 699999999999 99999999998765544211 1101111112 333 579998
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--cee
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG--VKM 383 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g--~~~ 383 (429)
...||+||+++++++++.+.......+++.+.+.+.++.++|+. .++ ..+.+.++++++++.+.|+++.. +..
T Consensus 260 gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~L~~---l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 334 (401)
T PRK00854 260 GGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAALKV---LTE--EGMIENAAEMGAYFLEGLRSIRSNIVRE 334 (401)
T ss_pred CCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHHHHH---HHH--cCHHHHHHHHHHHHHHHHHhhccCceEE
Confidence 33379999999999988876544455666789999999999875 121 33667888889999999988621 222
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+.|.++.+.-.++. .+..+++++|+++ ||.+
T Consensus 335 ~~g~g~~~~i~~~~~~-----------~~~~~~~~~L~~~-GV~v 367 (401)
T PRK00854 335 VRGRGLMLAVELEPEA-----------GGARQYCEALKER-GLLA 367 (401)
T ss_pred EeccceEEEEEEecCc-----------hhHHHHHHHHHHC-CeEE
Confidence 3566666554332321 2467899999876 8875
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=199.52 Aligned_cols=215 Identities=14% Similarity=0.180 Sum_probs=164.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCC----hHHHHHHcCCEEEEecC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS----YPEMARIADATPVILPT 208 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~ 208 (429)
...+|++.+|++. | .+++ ++++++++++.+++.+++++||+|+++.|+|.. +...++..|.+++.++.
T Consensus 61 ~~~~Le~~lA~l~----g---~~~~-v~~~sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v~~v~~ 132 (405)
T PRK08776 61 TRDLLGEALAELE----G---GAGG-VITATGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFALITADL 132 (405)
T ss_pred HHHHHHHHHHHHh----C---CCce-EEEcCHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcEEEEECC
Confidence 3456666676654 4 2344 555556899999999999999999999999987 34445667888888874
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
.|++.+++++++++|+|++++|+||||.+.+ +++|+++|+++ |++||+|++|.... ...++ .
T Consensus 133 -------~d~~~l~~~i~~~tklV~l~~P~NPtG~v~d---l~~I~~la~~~-gi~vIvD~a~a~~~----~~~pl-~-- 194 (405)
T PRK08776 133 -------TDPRSLADALAQSPKLVLIETPSNPLLRITD---LRFVIEAAHKV-GALTVVDNTFLSPA----LQKPL-E-- 194 (405)
T ss_pred -------CCHHHHHHhcCcCCeEEEEECCCCCCCccCC---HHHHHHHHHHc-CCEEEEECCCcccc----cCCcc-c--
Confidence 3889999999889999999999999999988 99999999999 99999999997521 11222 1
Q ss_pred CCCCceEEEeccChhcccc-cceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMT-GWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~-G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
.+..+++.|.+|.++.+ +...|++++ ++++.+.+.......+.+.+.+.+.++... .++++.+.++..+
T Consensus 195 --~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~g-------l~tl~~r~~~~~~ 265 (405)
T PRK08776 195 --FGADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRG-------LRTLDARLRVHQE 265 (405)
T ss_pred --ccCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhh-------hCcHHHHHHHHHH
Confidence 23348999999999744 467899876 577878777666555556677766555433 4567888888899
Q ss_pred HHHHHHHHhccCCCce
Q 014172 367 RRDFLVKSFGELEGVK 382 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~ 382 (429)
++..+.+.|++.|.+.
T Consensus 266 na~~la~~L~~~p~v~ 281 (405)
T PRK08776 266 NADAIAALLDGHAAVN 281 (405)
T ss_pred HHHHHHHHHHcCCCee
Confidence 9999999999887654
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=196.78 Aligned_cols=304 Identities=14% Similarity=0.142 Sum_probs=214.2
Q ss_pred cCCCeEEcCCCC--CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++.+|++.+++.+++.+.. .+ +.....++++++++.+.. .++ .+++++++++++.
T Consensus 27 dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~-~~-~~~~~~~~~~~la~~l~~------~~~~~~~~~~SGseA~~ 98 (375)
T PRK04260 27 DGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIW-HS-PNLYLNSLQEEVAQKLIG------DKDYLAFFCNSGAEANE 98 (375)
T ss_pred CCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcC-cc-cCccCCHHHHHHHHHHhc------CcCCEEEEcCccHHHHH
Confidence 567799998774 445567789999999886532 22 333456788999987742 223 4689999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChH-HHHHHcCCEEEE------ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYP-EMARIADATPVI------LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~------v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
.+++... ..++.|++.+.+|.+.. ..+...|.+... ++......+ .|++.+++.+.+++.+|++..++|+
T Consensus 99 ~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dl~~l~~~l~~~~a~vi~e~v~~~ 177 (375)
T PRK04260 99 AAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF-NDLNSVKALVNKNTAAVMLELVQGE 177 (375)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC-CCHHHHHHhcCCCeEEEEECCeECC
Confidence 8888763 34578888888887643 344333322110 000000001 3899999988777888889999999
Q ss_pred ccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH
Q 014172 241 TGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (429)
Q Consensus 241 tG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~ 319 (429)
+|...+ .+.+++|.++|+++ |+++|+||+|.++...+. ........-..+ +.||||.++ +|+|+||++++++
T Consensus 178 ~G~~~~~~~~l~~~~~l~~~~-~~~~i~De~~~g~g~~g~-~~~~~~~~~~pd----i~t~sK~l~-~G~~ig~~~~~~~ 250 (375)
T PRK04260 178 SGVLPADKDFVKALADYCQET-GILLIVDEVQTGMGRTGK-LYAFEHYGIEPD----IFTLAKGLA-NGVPVGAMLAKSS 250 (375)
T ss_pred CCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccc-hhhhHhhCCCCC----EEEeccccc-CCcceEEEEEcHH
Confidence 998754 57799999999999 999999999987644442 212111111122 458999998 8999999999999
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCc
Q 014172 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~ 399 (429)
+.+.+.......+++.+.+.+.++.++|+.... ++++++.++..+..++.+.+.+.+.+.+.... ..|+++|++++.
T Consensus 251 ~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~- 327 (375)
T PRK04260 251 LGGAFGYGSHGSTFGGNKLSMAAASATLDIMLT-AGFLEQALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTA- 327 (375)
T ss_pred HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecC-
Confidence 988876544455666789999999999976321 46677888888888888888887764344333 378889999842
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..++.++|.++ ||.+
T Consensus 328 ------------~~~~~~~~l~~~-Gi~v 343 (375)
T PRK04260 328 ------------DLSQLVEAARDK-GLIV 343 (375)
T ss_pred ------------cHHHHHHHHHhC-CCEE
Confidence 567899988876 8875
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=196.99 Aligned_cols=241 Identities=13% Similarity=0.139 Sum_probs=181.3
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCC--CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vl 183 (429)
+++.++++.++..... .....|+. +++...|+++||++. ..+++++++|+++++..++.+++++||+|+
T Consensus 34 ~~~~~~~~~~~~~~~~-~~~~~Y~r~~npt~~~Le~~iA~le--------~~~~~~~~~sG~~Ai~~~l~all~~GD~Vv 104 (394)
T PRK09028 34 VFDTVAEMRHAAKNRA-NGEMFYGRRGTPTHFAFQAAIVELE--------GGAGTALYPSGAAAISNALLSFLKAGDHLL 104 (394)
T ss_pred ccCCHHHHHHHhccCc-cCCceecCCCCchHHHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 4555666666554321 12244665 344579999999874 224789999999999999999999999999
Q ss_pred EcCCCCCChHHH----HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh
Q 014172 184 IPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259 (429)
Q Consensus 184 v~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~ 259 (429)
+++|.|.++... +...|+++..++.. +.+.+++++++++|+|++++|+||||.+.+ +++|+++|++
T Consensus 105 v~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~-------~~e~l~~~l~~~TklV~lespsNPtg~v~d---l~~I~~la~~ 174 (394)
T PRK09028 105 MVDSCYEPTRDLCDKILKGFGIETTYYDPM-------IGEGIRELIRPNTKVLFLESPGSITMEVQD---VPTLSRIAHE 174 (394)
T ss_pred EECCCcHHHHHHHHHhhhhcceEEEEECCC-------CHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHH
Confidence 999999877653 34578888877631 567899999999999999999999998877 9999999999
Q ss_pred CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHHHhhcccCCCchH
Q 014172 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI 338 (429)
Q Consensus 260 ~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~ 338 (429)
| |+++|+|++|.... ...+ + ..+.++++.|.+|.+ |-.+...|+++.++++.+.+.......+.+.+++
T Consensus 175 ~-g~~lvvD~t~a~p~----~~~P---l--~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~~~G~~~~p~ 244 (394)
T PRK09028 175 H-DIVVMLDNTWASPI----NSRP---F--EMGVDISIQAATKYIVGHSDVMLGTATANEKHWDQLREHSYLMGQCTSPD 244 (394)
T ss_pred c-CCEEEEECCccccc----cCCc---c--ccCceEEEEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHHhcCCCCCHH
Confidence 9 99999999997521 1111 1 246679999999999 4445777888888887777776655566667777
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 339 SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 339 ~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
....+...|+ .+.-+.++..++...+.+.|++.|.++
T Consensus 245 ~a~l~~rgl~-------TL~lR~~~~~~na~~la~~L~~~p~v~ 281 (394)
T PRK09028 245 DVYLAMRGLR-------TLGVRLAQHEKNALKVANWLATRPEVD 281 (394)
T ss_pred HHHHHHcccC-------cHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 6554444433 366677778888888999999887653
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=201.14 Aligned_cols=262 Identities=15% Similarity=0.146 Sum_probs=182.0
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHH--cCCCCCC---CC------CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIR--EGFTRYT---PN------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~--~~~~~Y~---~~------~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
.|.|+.+... ++|+.+.+++.+.+. ....... .. ....++|+.+++++ | .++++|++++|++
T Consensus 4 ~iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~----g--~~~~~v~~~~g~t 76 (404)
T PRK14012 4 PIYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI----G--ADPREIVFTSGAT 76 (404)
T ss_pred eEEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc----C--cCcCeEEEeCCHH
Confidence 3667666654 457888999888775 2211111 00 11234555565554 4 4567899999999
Q ss_pred HHHHHHHHHhc----CCCCEEEEcCCCCCChHHHHH---HcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 166 QSILQAVLAVC----SPGDEVIIPAPFWVSYPEMAR---IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 166 ~al~~~l~~l~----~~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
+++++++.++. ++||+|+++.++|+++...++ ..|++++.++.++ ++.+|++.|+++++++++++++++++
T Consensus 77 ~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~~t~lv~~~~~~ 154 (404)
T PRK14012 77 ESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRDDTILVSIMHVN 154 (404)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEECcC
Confidence 99998887764 789999999999988755443 4599999998863 45689999999999999999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
||||.+++ +++|.++|+++ ++++|+|++++. |..+..+.. .+..+++.|++|.+| ++ ++|++++++
T Consensus 155 n~tG~~~~---~~~I~~la~~~-g~~vivD~a~~~----g~~~~~~~~----~~~D~~~~s~~K~~g-p~-g~G~l~~~~ 220 (404)
T PRK14012 155 NEIGVIQD---IAAIGEICRER-GIIFHVDAAQSV----GKVPIDLSK----LKVDLMSFSAHKIYG-PK-GIGALYVRR 220 (404)
T ss_pred CCccchhh---HHHHHHHHHHc-CCEEEEEcchhc----CCcccCccc----CCCCEEEEehhhccC-CC-ceEEEEEec
Confidence 99999999 89999999999 999999999875 222222222 234478889999887 44 689988776
Q ss_pred HHHHHHHHHh------hcccC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 319 HFVAACNKIQ------SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 319 ~~~~~l~~~~------~~~~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
+....+.... ..+.. +++.....+..+++.. ...+.....+++++.++++.+.|++++++.+.
T Consensus 221 ~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~---~~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~ 290 (404)
T PRK14012 221 KPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARI---AKEEMATENERIRALRDRLWNGIKDIEEVYLN 290 (404)
T ss_pred CCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 5332221110 00111 2233333333345543 23345667788888999999999888777664
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-22 Score=197.05 Aligned_cols=217 Identities=13% Similarity=0.130 Sum_probs=165.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH---HHcCCEEEEe
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIADATPVIL 206 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v 206 (429)
.++...+|++.+|++++ .+++++++|+++++..++.+++++||+|+++.|+|.++...+ +..|++++.+
T Consensus 51 ~np~~~~lE~~lA~l~g--------~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~ 122 (385)
T PRK08574 51 ENPTLRPLEEALAKLEG--------GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLA 122 (385)
T ss_pred CCccHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEE
Confidence 34567889999999863 357888899999999999999999999999999999987665 4457777665
Q ss_pred cCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 207 PTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
+ +|++++++++++ ++++|++++|+||||.+++ +++|+++|+++ |++||+|++|..... ..++
T Consensus 123 ~--------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~d---l~~I~~la~~~-gi~livD~t~a~~~~----~~~l- 185 (385)
T PRK08574 123 Y--------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVID---VPEVAKAAKEL-GAILVVDNTFATPLL----YRPL- 185 (385)
T ss_pred C--------CCHHHHHHhcCccCceEEEEECCCCCCCEecC---HHHHHHHHHHc-CCEEEEECCCCcccc----CChh-
Confidence 3 368999999988 8999999999999999999 88999999999 999999999964221 1111
Q ss_pred cCCCCCCceEEEeccChhcccccce-eeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWR-LGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R-~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
..+.++++.|++|.++.+|-. .|++++ ++++.+.++......+.+.+.+....+...|+ .+..+.++
T Consensus 186 ----~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~-------tL~~R~~~ 254 (385)
T PRK08574 186 ----RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLK-------TLEVRFER 254 (385)
T ss_pred ----hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccC-------cHHHHHHH
Confidence 134569999999999756655 475554 67888888776665555566654443333333 35556666
Q ss_pred HHHHHHHHHHHhccCCCce
Q 014172 364 FRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~ 382 (429)
..++...+.+.|++.|.++
T Consensus 255 ~~~na~~la~~L~~~p~v~ 273 (385)
T PRK08574 255 QCRNAMAIAEFLSEHPKVA 273 (385)
T ss_pred HHHHHHHHHHHHHcCCCcC
Confidence 6778888888888776654
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=189.16 Aligned_cols=341 Identities=15% Similarity=0.169 Sum_probs=250.4
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCC--CCCCC---hHHHHHHHHHHHH-cCCCCCCCCCCCHHHHHHHH
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE--PDFDT---PVLIAEAGINAIR-EGFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~--~~~~~---p~~v~~a~~~~~~-~~~~~Y~~~~G~~~lr~~ia 142 (429)
-.++..-+|.++.-+.+..+. ...+..|||+.|. -+... -+.|.+|..+... +..-.|.|-.|.+++.+..+
T Consensus 28 ~s~V~maPpDpILGVTeAfk~--D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sa 105 (427)
T KOG1411|consen 28 WSHVEMAPPDPILGVTEAFKK--DPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSA 105 (427)
T ss_pred hhcCCCCCCCCcccHHHHHhc--CCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHH
Confidence 345555566666555554432 3455789999997 23222 3677777766554 23457999999999999999
Q ss_pred HHHHhhcCCCCCCCcEE--EecChHHHHHHHHHHh--cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 143 HKLKEENGLSYTPDQIL--VSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 143 ~~l~~~~g~~~~~~~i~--~t~G~~~al~~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
++.-......+..++|+ .|-++|.++......+ .-++..|.+++|+|.++..+...+|+.+..+........++|.
T Consensus 106 kLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~ 185 (427)
T KOG1411|consen 106 KLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDF 185 (427)
T ss_pred HHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccch
Confidence 98743322334455664 3446777776543333 3478999999999999999999999999888876556677899
Q ss_pred HHHHhhcccC--CcEEEE-cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC--CCCCccccCCCCCCc
Q 014172 219 KVLESKLTEK--SRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~~~--~~~i~l-~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~--~~~~~~~~~~~~~~~ 293 (429)
+.+.+.+... -..|++ ...|||||+..+.|+|++|.++.++. +.+.+.|-+|..|.-++ .....++-+......
T Consensus 186 ~g~ledl~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k-~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~ 264 (427)
T KOG1411|consen 186 KGMLEDLGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEK-NLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHE 264 (427)
T ss_pred HHHHHHHhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhc-cccchhhhhhcccccCCchhhHHHHHHHHHcCCc
Confidence 8887777642 223333 45599999999999999999999999 99999999999987653 222344445555678
Q ss_pred eEEEeccChhcccccceeeEEE--c-CHH----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHH---HHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIA--G-PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV---SKMVKA 363 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~--~-~~~----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~---~~~~~~ 363 (429)
++++.||.|.+|+.|-|+|.+. + +.+ +-.+++.+.++..++|+..+..++...|.+.....+|+ +.+.++
T Consensus 265 ~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadR 344 (427)
T KOG1411|consen 265 ILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADR 344 (427)
T ss_pred eEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHh
Confidence 8999999999999999999863 3 333 34456677788899999999999999998865555664 457788
Q ss_pred HHHHHHHHHHHhccC--CC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l--~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+...|+.+.+.|++. ++ |++...+-|||+|..+. .+..+.|.+++.|++
T Consensus 345 i~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~----------------peQv~~l~ke~~iYm 396 (427)
T KOG1411|consen 345 IISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLN----------------PEQVDWLTKEYHIYL 396 (427)
T ss_pred hhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCC----------------HHHHHHHHhhheeee
Confidence 899999999999884 22 55567888999987663 366778888887764
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-22 Score=197.31 Aligned_cols=262 Identities=15% Similarity=0.155 Sum_probs=187.3
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC---CC------CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT---PN------AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~---~~------~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
.|.|+.+.+. +.|+.+++++.+.+.....+.. .. ....++|+.++++ +| .++++|++|+|++++
T Consensus 4 ~~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~----~g--~~~~~v~~~~g~t~a 76 (402)
T TIGR02006 4 PIYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAEL----IG--ADSREIVFTSGATES 76 (402)
T ss_pred cEEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEeCCHHHH
Confidence 4677766655 4578899998887753221110 00 1123445555555 45 467899999999999
Q ss_pred HHHHHHHhc----CCCCEEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 168 ILQAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 168 l~~~l~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
+..++.++. ++||+|+++.+.|+++...+ +..|++++.+++++ ++.+|++.++++++++++++++++++||
T Consensus 77 ~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~~lv~v~~~~n~ 154 (402)
T TIGR02006 77 NNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRDDTILVSIMHVNNE 154 (402)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCCEEEEEECCCcC
Confidence 998887763 68999999999999866543 45699999999863 4568999999999989999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~ 320 (429)
||.+.+ +++|.++|+++ |+++++|++++. +..+..+.. .+..+++.|++|.+|.+| +|+++..++.
T Consensus 155 tG~~~~---~~~I~~l~~~~-g~~livD~a~a~----g~~~~~~~~----~~~D~~~~s~~K~~gp~G--~G~l~~~~~~ 220 (402)
T TIGR02006 155 IGVIQD---IAAIGEICRER-KVFFHVDAAQSV----GKIPINVNE----LKVDLMSISGHKIYGPKG--IGALYVRRKP 220 (402)
T ss_pred ceeccc---HHHHHHHHHHc-CCEEEEEcchhc----CCcccCccc----cCCCEEEEehhhhcCCCc--eEEEEEccCC
Confidence 999999 88999999999 999999999875 222222221 345588889999887446 8888877543
Q ss_pred HHHHHHHh-------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 321 VAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 321 ~~~l~~~~-------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
...+.... .....+++.....++..+++. ..++++...+++++.++.+.+.|++++++.+.
T Consensus 221 ~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~---~~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~ 288 (402)
T TIGR02006 221 RVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI---AKEEMAQDTAHVLALRDRLLNGIKSIEEVYLN 288 (402)
T ss_pred CCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 32222110 111223455555555566764 34567788889999999999999988887765
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=199.36 Aligned_cols=321 Identities=12% Similarity=0.080 Sum_probs=208.6
Q ss_pred hcCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..+|+..|...... ++.+.+++.+++.+..+.+.+..+.+ ...++++++....+.... +.+++++++++++
T Consensus 38 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~la~~l~~~~~~~~~-~~~~f~~sGsea~ 115 (425)
T PRK08088 38 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYE-PYLELCEKMNQKVPGDFA-KKTLLVTTGSEAV 115 (425)
T ss_pred CCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCCH-HHHHHHHHHHHhCCCCCC-CEEEEeCCcHHHH
Confidence 367789999888755443 78999999999876432332222333 345788888776553322 4677777777777
Q ss_pred HHHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCCEEE--------------E--ecCCCCCCCCC--CHHHHHhhcc--
Q 014172 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV--------------I--LPTRISENFLL--DPKVLESKLT-- 226 (429)
Q Consensus 169 ~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~--------------~--v~~~~~~~~~~--d~e~l~~~l~-- 226 (429)
..+++... .....|+...++|.+....+...+.... . +|... ++... +++.+++.+.
T Consensus 116 e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l~~~ 194 (425)
T PRK08088 116 ENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL-HGVSEDDAIASIERIFKND 194 (425)
T ss_pred HHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccc-cCccHHHHHHHHHHHHHhc
Confidence 76666542 1234566679999988766555443211 1 12111 11111 1456777774
Q ss_pred ---cCCcEEEE-cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 227 ---EKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 227 ---~~~~~i~l-~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
++..+|++ +..+|+++...+.+.+++|.++|++| ++++|+||+|.++.+.+. ..++.. .+.+..+.||||
T Consensus 195 ~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~-~~~lI~Dev~~g~g~~g~-~~~~~~----~~~~pdi~s~sK 268 (425)
T PRK08088 195 AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEH-GIMLIADEVQTGAGRTGT-LFAMEQ----MGVAADLTTFAK 268 (425)
T ss_pred cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcc-hhHHhh----cCCCCCEEEEec
Confidence 34455555 33367777788999999999999999 999999999998655442 112111 133345899999
Q ss_pred hcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.++ +|+|+||+++++++++.+.......+++.+.+.|.++.++|+.... +++++++++..+++++.+.+.+.+.|.+.
T Consensus 269 ~l~-~G~rig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 346 (425)
T PRK08088 269 SIA-GGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQ-ENLLQKANALGEKLKDGLLAIAEKHPEIG 346 (425)
T ss_pred ccc-CCCcceeeEecHHHHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhCCCeE
Confidence 999 9999999999999999887766667778899999999999986432 45566666666666666665555565443
Q ss_pred eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 383 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+. |+++|+.+........ .......++.++|+++ ||.+
T Consensus 347 ~v~g~-G~~~~l~l~~~~~~~~---p~~~~~~~l~~~~~~~-Gv~~ 387 (425)
T PRK08088 347 DVRGL-GAMIAIELFEDGDHSK---PNAKLTAQIVARARDK-GLIL 387 (425)
T ss_pred EEecc-ceEEEEEEecCCCCCC---CCHHHHHHHHHHHHhC-CCEE
Confidence 33344 7779999843100000 0001367888888876 7653
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=195.15 Aligned_cols=217 Identities=19% Similarity=0.178 Sum_probs=164.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~ 201 (429)
.+| +++...+|+++++++. . +++++++++++++..++.+++++||+|+++.|+|..+...+ ...|+
T Consensus 46 ~ry-~~p~~~~Le~~lA~l~--------~-~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~ 115 (366)
T PRK07582 46 GRA-SNPTWRALEAALGELE--------G-AEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV 115 (366)
T ss_pred ECC-CCccHHHHHHHHHHHc--------C-CCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE
Confidence 445 6778899999999885 2 34566666678999999999999999999999999887654 45799
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~ 281 (429)
+++.++.+.. .+ .+.+++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|... .+..
T Consensus 116 ~v~~v~~~~~------~~----~~~~~t~lV~le~p~NPtg~v~d---i~~I~~~a~~~-g~~lvVD~t~~~~--~~~~- 178 (366)
T PRK07582 116 TVREAPTAGM------AE----AALAGADLVLAETPSNPGLDVCD---LAALAAAAHAA-GALLVVDNTTATP--LGQR- 178 (366)
T ss_pred EEEEECCCCh------HH----HhccCceEEEEECCCCCCCCccC---HHHHHHHHHHc-CCEEEEECCCCCc--cccC-
Confidence 9999986421 11 22357899999999999999988 99999999999 9999999999642 1211
Q ss_pred CccccCCCCCCceEEEeccChhc-ccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
++ . .+..+++.|++|.+ |.+|.|+||+++ ++++++.+..+....+.+++.+....+...+.. +..
T Consensus 179 -p~-~----~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~t-------l~~ 245 (366)
T PRK07582 179 -PL-E----LGADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGT-------LGL 245 (366)
T ss_pred -ch-h----cCCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcccc-------HHH
Confidence 11 1 23348899999998 446799999997 578888888777666666777776655555543 444
Q ss_pred HHHHHHHHHHHHHHHhccCCCce
Q 014172 360 MVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
..++..++...+.+.|++.|.++
T Consensus 246 R~~~~~~na~~la~~L~~~p~v~ 268 (366)
T PRK07582 246 RFARQCANALAVAELLAGHPAVR 268 (366)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 55666778888888898877664
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-22 Score=196.61 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=165.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~ 201 (429)
.+| +++...+|++.++++. ..+++++++|+++++.+++.+++++||+|++++|+|..+.. .+...|+
T Consensus 60 ~r~-~~pt~~~Le~~lA~l~--------g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi 130 (394)
T PRK07050 60 GLH-ATPTSLALAQRLAEIE--------GGRHALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI 130 (394)
T ss_pred CCC-CCHHHHHHHHHHHHHh--------CCCeEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence 344 4445567777777764 34689999999999999999999999999999999998764 4567899
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~ 281 (429)
+++.++.. +.+.+++++++++|+|++++|+||+|.+.+ +++|+++|+++ +++||+|++|....+
T Consensus 131 ~v~~vd~~-------~~~~l~~~i~~~tklV~le~p~Np~~~~~d---i~~I~~ia~~~-gi~livD~a~a~~~~----- 194 (394)
T PRK07050 131 TVRFYDPL-------IGAGIADLIQPNTRLIWLEAPGSVTMEVPD---VPAITAAARAR-GVVTAIDNTYSAGLA----- 194 (394)
T ss_pred EEEEECCC-------CHHHHHHhcCCCCeEEEEECCCCCCccHhh---HHHHHHHHHHc-CCEEEEECCcccccc-----
Confidence 99988742 457889999999999999999999987666 99999999999 999999999976321
Q ss_pred CccccCCCCCCceEEEeccChhcc-cccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
+..+. .+.++++.|++|.++ ..+.+.|++++ ++++++.++..+...+.+.+.+....+...++ .+..
T Consensus 195 --~~~l~--~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~-------tl~~ 263 (394)
T PRK07050 195 --FKPFE--HGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLP-------SLQV 263 (394)
T ss_pred --cCHHH--cCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCC-------cHHH
Confidence 11111 245699999999996 23356898776 67888888877766666667665544433232 2334
Q ss_pred HHHHHHHHHHHHHHHhccCCCce
Q 014172 360 MVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
+.++..++...+.+.|++.|++.
T Consensus 264 Rl~~~~~~a~~la~~L~~~p~v~ 286 (394)
T PRK07050 264 RLAAHDRSALEVAEWLKARPEIA 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 55555666667778887776654
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=192.92 Aligned_cols=288 Identities=16% Similarity=0.133 Sum_probs=198.0
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCCCC---CC--CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 100 LAAGEPDFDTPVLIAEAGINAIREGFTRYT---PN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 100 L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~---~~--~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
|+.+-+. +.|+.+.+++.+.+.....+-. .. ....++.+.+.+.+.+.+| .++++|++|+|++++++.++..
T Consensus 3 ld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g--~~~~~v~~t~~~t~a~~~~l~~ 79 (364)
T PLN02651 3 LDMQATT-PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIG--ADPKEIIFTSGATESNNLAIKG 79 (364)
T ss_pred ccCcCCC-CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEeCCHHHHHHHHHHH
Confidence 4444443 4578899999887753211100 00 1112333344444444555 4678999999999998877765
Q ss_pred h----cCCCCEEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCH
Q 014172 175 V----CSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (429)
Q Consensus 175 l----~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~ 247 (429)
+ .++||+|++....|+++.. .++..|++++.++.+ .++.+|+++++++++++++++++++++|+||.++|
T Consensus 80 ~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~--~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~- 156 (364)
T PLN02651 80 VMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK--SDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQP- 156 (364)
T ss_pred HHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccC--CCCcCCHHHHHHhcCCCcEEEEEECCCCCceeccc-
Confidence 4 4789999999988876543 334579999999885 34568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH
Q 014172 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327 (429)
Q Consensus 248 ~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~ 327 (429)
+++|.++|++| |+++++|.+++. |..+..+.. .+..+++.|.+|.+|. ..+|+++.+++....+...
T Consensus 157 --l~~I~~~~~~~-g~~~~vD~a~~~----g~~~~~~~~----~~~D~~~~s~hK~~gp--~G~g~l~v~~~~~~~l~p~ 223 (364)
T PLN02651 157 --VEEIGELCREK-KVLFHTDAAQAV----GKIPVDVDD----LGVDLMSISGHKIYGP--KGVGALYVRRRPRVRLEPL 223 (364)
T ss_pred --HHHHHHHHHHc-CCEEEEEcchhh----CCcccCccc----CCCCEEEechhhhCCC--CceEEEEEcCCCCCCCCcc
Confidence 89999999999 999999999985 222222222 3556999999996553 3489998877554433211
Q ss_pred h-------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCc-----eEEEEE
Q 014172 328 Q-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQG-----AFYLFI 394 (429)
Q Consensus 328 ~-------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~-----~~~~~~ 394 (429)
. .....+++.....++.++|+. ..+..++..++.++.++++.+.|++ ++|+++..|.. ...+.+
T Consensus 224 ~~g~~~~~~~~~GT~~~~~~~~l~~al~~---~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~ 300 (364)
T PLN02651 224 MSGGGQERGRRSGTENTPLVVGLGAACEL---AMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNL 300 (364)
T ss_pred ccCCCccCCccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEE
Confidence 1 112234566666667777765 2344567778888999999999986 68888876411 223555
Q ss_pred ecCCccCCcccCCCCCCChHHHHHHHH
Q 014172 395 DFSTYYGSEAEGFGKIENSESLCRYLL 421 (429)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~Ll 421 (429)
.+++. +..++..+|.
T Consensus 301 ~~~~~------------~~~~~~~~L~ 315 (364)
T PLN02651 301 SFAYV------------EGESLLMGLK 315 (364)
T ss_pred EeCCC------------CHHHHHHHhC
Confidence 66542 6778888874
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=191.84 Aligned_cols=307 Identities=14% Similarity=0.159 Sum_probs=207.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++. +|++.+++.+++.+.. .++. ....+....+++.+.+..+ .+.+++++++++++.
T Consensus 37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~-~~~~~~~~~la~~l~~~~~----~~~v~~~~sGseA~e 110 (406)
T PRK12381 37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFW-HTGN-GYTNEPVLRLAKKLIDATF----ADRVFFCNSGAEANE 110 (406)
T ss_pred CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcc-cccC-ccCCHHHHHHHHHHHhhCC----CCeEEEcCCcHHHHH
Confidence 577899998764 23333 7899999999886521 1211 1123344556666654432 369999999999999
Q ss_pred HHHHHhc--------CCCCEEEEcCCCCCChHHHHHHcCCEEEE----ecCCC--CCCCCCCHHHHHhhcccCCcEEEEc
Q 014172 170 QAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADATPVI----LPTRI--SENFLLDPKVLESKLTEKSRLLILC 235 (429)
Q Consensus 170 ~~l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~--~~~~~~d~e~l~~~l~~~~~~i~l~ 235 (429)
.+++... .....|+..+.+|++....+...+..... .++.+ ....-.|++.+++.+.+++++|++
T Consensus 111 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavii- 189 (406)
T PRK12381 111 AALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQTCAVIV- 189 (406)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCeeEEEE-
Confidence 9988752 13467999999999876544433322110 01100 000113889999999877777777
Q ss_pred CCCCCccCCC--CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 236 SPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 236 ~p~NPtG~~~--~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
.|.|++|-++ +.+.+++|.++|++| |+++|+||+|.++.+.|.. .......-..+ +.||||.++ +|+|+||
T Consensus 190 EPv~~~gg~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~gr~G~~-~~~~~~~v~pD----i~t~sK~l~-gG~~ig~ 262 (406)
T PRK12381 190 EPIQGEGGVIPADKAFLQGLRELCDRH-NALLIFDEVQTGVGRTGEL-YAYMHYGVTPD----VLTTAKALG-GGFPIGA 262 (406)
T ss_pred eCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEcchhhCCCCCcch-hhhHhhCCCCC----EEEehhhhh-CCCceEE
Confidence 6899998765 689999999999999 9999999999887665532 12111111112 469999999 8999999
Q ss_pred EEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC-Cce-ee-cCCceE
Q 014172 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GVK-MS-EPQGAF 390 (429)
Q Consensus 314 v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~-g~~-~~-~p~~~~ 390 (429)
+++++++++.+.......+++.+++.+.++.++|+. .+ -.++++.++++.+++.+.|+++. ... +. ....|+
T Consensus 263 ~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~l~~---l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl 337 (406)
T PRK12381 263 MLTTEKCASVMTVGTHGTTYGGNPLASAVAGKVLEL---IN--TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGL 337 (406)
T ss_pred EEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH---Hh--hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeE
Confidence 999999998887655555667899999999998875 11 23567888889999999888751 121 11 223467
Q ss_pred EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++.++.... .....+++.|+++ ||.+
T Consensus 338 ~~~~~l~~~~~---------~~~~~~~~~l~~~-Gv~v 365 (406)
T PRK12381 338 LIGCVLNAEYA---------GKAKQISQEAAKA-GVMV 365 (406)
T ss_pred EEEEEecCchh---------hHHHHHHHHHHHC-CcEE
Confidence 78888764200 1346777777665 8875
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=189.90 Aligned_cols=212 Identities=17% Similarity=0.143 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH---HHHHHcCCEEEEecCCCCC
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISE 212 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~ 212 (429)
+|++.++++. | .+..+++++++.++..++.+++++||+|+++++.|+++. ..++..|++++.++.
T Consensus 51 ~lE~~la~le----g----~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~---- 118 (397)
T PRK05939 51 ALEAKITKME----G----GVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDA---- 118 (397)
T ss_pred HHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECC----
Confidence 7777787775 2 233455556689999999999999999999999998754 356678999999985
Q ss_pred CCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 213 ~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
.|++++++++++++++|++++|+||||.+.+ +++|+++|+++ |+++|+|++|.... .+. +...+
T Consensus 119 ---~d~e~l~~~l~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~t~a~~~-------~~~--~~~~g 182 (397)
T PRK05939 119 ---TDVQNVAAAIRPNTRMVFVETIANPGTQVAD---LAGIGALCRER-GLLYVVDNTMTSPW-------LFR--PKDVG 182 (397)
T ss_pred ---CCHHHHHHhCCCCCeEEEEECCCCCCCCHHh---HHHHHHHHHHc-CCEEEEECCccccc-------ccC--ccccC
Confidence 2899999999999999999999999999977 99999999999 99999999986421 111 11136
Q ss_pred ceEEEeccChhcccccceeeEEEcCHHH----------------------HHHHH-HHhhcccCCCchHHHHHHHHHHhc
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHF----------------------VAACN-KIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v~~~~~~----------------------~~~l~-~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
..+++.|+||.++..|+++|+++.+... +..+. ......+...++.....+..-
T Consensus 183 aDivv~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rg--- 259 (397)
T PRK05939 183 ASLVINSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAIG--- 259 (397)
T ss_pred CEEEEecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHcC---
Confidence 7799999999999899999998764211 11111 111233434455443333222
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 350 GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
-+-+..+.++..++...+.+.|++.|.++
T Consensus 260 ----l~tl~~R~~~~~~na~~la~~L~~~p~V~ 288 (397)
T PRK05939 260 ----AETLALRVDRSCSNALALAQFLEAHPKVA 288 (397)
T ss_pred ----cCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 23355566666778888888898877654
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=195.01 Aligned_cols=161 Identities=16% Similarity=0.209 Sum_probs=132.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCCh----HHHHHHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSY----PEMARIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~ 205 (429)
+++-..+|++.+|+++ | .+..++++++++++..++.+++++||+|+++.+.|.+. ...++..|++++.
T Consensus 55 ~~p~~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~ 126 (418)
T TIGR01326 55 MNPTTDVLEQRIAALE----G----GVAALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRF 126 (418)
T ss_pred CChhHHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEE
Confidence 3344567888888775 3 24678999999999999999999999999999988653 3456778999999
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++.+ |++.+++++++++++|++++|+||||.+.+ +++|.++|++| |+++|+|++|....+ ..+
T Consensus 127 v~~~-------d~~~l~~~l~~~t~~V~le~p~NPtg~v~d---l~~I~~la~~~-~i~livD~t~~~~~~----~~~-- 189 (418)
T TIGR01326 127 VDPD-------DPEEFEKAIDENTKAVFAETIGNPAINVPD---IEAIAEVAHAH-GVPLIVDNTFATPYL----CRP-- 189 (418)
T ss_pred ECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCchhhc----CCc--
Confidence 9841 899999999999999999999999999998 88999999999 999999999974211 111
Q ss_pred cCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
+ ..+.++++.||||.++.+|+|+||++++.
T Consensus 190 -l--~~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 190 -I--DHGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred -h--hcCCeEEEECccccccCCccceEEEEEec
Confidence 1 13567999999999998999999998854
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-20 Score=182.82 Aligned_cols=270 Identities=19% Similarity=0.247 Sum_probs=189.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCCCChH
Q 014172 115 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVSYP 193 (429)
Q Consensus 115 ~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~y~~~~ 193 (429)
+++.+.+.++.. +......++++.++++++ .+++++++|+++++..++.++ +++||+|+++.++|.++.
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~--------~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~ 72 (352)
T cd00616 3 EAVEEVLDSGWL--TLGPKVREFEKAFAEYLG--------VKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATA 72 (352)
T ss_pred HHHHHHHHcCCc--cCCHHHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHH
Confidence 455666666443 334457889999998873 246888889999999999998 589999999999999999
Q ss_pred HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc
Q 014172 194 EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273 (429)
Q Consensus 194 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~ 273 (429)
..+...|++++.+++++ +++.+|++.+++.+++++++|+++ |++|.+.+ +++|.++|+++ ++++|+|++|..
T Consensus 73 ~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~l~~~~-~i~li~D~a~~~ 144 (352)
T cd00616 73 NAILLLGATPVFVDIDP-DTYNIDPELIEAAITPRTKAIIPV---HLYGNPAD---MDAIMAIAKRH-GLPVIEDAAQAL 144 (352)
T ss_pred HHHHHcCCeEEEEecCC-CcCCcCHHHHHHhcCcCCeEEEEE---CCCCCcCC---HHHHHHHHHHc-CCeEEEECCCCC
Confidence 99999999999999864 357789999999998899999875 47999988 88899999999 999999999985
Q ss_pred cccCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEcC-HHHHHHHHHHhhcc---------------cCCC
Q 014172 274 IIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF---------------TSGA 335 (429)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~---------------~~~~ 335 (429)
....... .+.. ...+.+.||+ |.+ ++.+.|+++.+ +++.+.+....... ....
T Consensus 145 g~~~~~~--~~~~-----~~d~~~~S~~~~K~~--~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (352)
T cd00616 145 GATYKGR--KVGT-----FGDAGAFSFHPTKNL--TTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRL 215 (352)
T ss_pred CCeECCE--Eccc-----CcceeEEcCCCCCCC--cccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCc
Confidence 3221110 1111 1236677876 877 34456888775 57777665543211 1112
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc-----eEEEEEecCCccCCcccCCCCC
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-----AFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~-----~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
+.+...++... .+.+++..++.+++.+++.+.|.+++|+++..+.. ...+.+.++... .
T Consensus 216 ~~~~aa~~~~~-------l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 279 (352)
T cd00616 216 SEIQAAIGLAQ-------LEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEA---------G 279 (352)
T ss_pred CHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcC---------C
Confidence 22222222221 23456677777889999999999988888764322 233445555200 0
Q ss_pred CChHHHHHHHHHhCCeec
Q 014172 411 ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++.+.|.++ ||.+
T Consensus 280 ~~~~~v~~~L~~~-gI~~ 296 (352)
T cd00616 280 ESRDELIEALKEA-GIET 296 (352)
T ss_pred CCHHHHHHHHHHC-CCCe
Confidence 3678899988665 8854
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=186.90 Aligned_cols=233 Identities=13% Similarity=0.148 Sum_probs=171.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCE-EE
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-PV 204 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~ 204 (429)
.+| +++...+|++++|++. ..+++++++|+++++.+++ .++++||+|+++.+.|......+.....+ -+
T Consensus 49 ~R~-~~p~~~~le~~lA~le--------g~~~~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~~~ 118 (364)
T PRK07269 49 TRT-KNPTRAKLEETLAAIE--------SADYALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEGRF 118 (364)
T ss_pred eCC-CCccHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcCcE
Confidence 445 4566789999999986 3578999999999999888 46799999999999998765544332111 01
Q ss_pred EecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcc
Q 014172 205 ILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284 (429)
Q Consensus 205 ~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~ 284 (429)
.+ .|..|++++++++++++|+|++++|+||||.+.+ +++|+++|+++ ++++|+|++|....+. .++
T Consensus 119 ~~------~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~d---i~~I~~la~~~-gi~vvvD~t~~~~~~~----~pl 184 (364)
T PRK07269 119 HF------TYANTEEELIAAIEEDTDIVYIETPTNPLMVEFD---IEKVAKLAHAK-GAKVIVDNTFYSPIYQ----RPI 184 (364)
T ss_pred EE------EecCCHHHHHHhcCcCceEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cch
Confidence 11 1335899999999999999999999999999998 99999999999 9999999997642211 111
Q ss_pred ccCCCCCCceEEEeccChhcccccc-eeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~-R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
. .+..+++.|++|.++-+|- =.||+++ ++++.+.++......+.+.+.+....+...|+ .+..+.+
T Consensus 185 -~----~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~-------tL~~r~~ 252 (364)
T PRK07269 185 -E----LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLK-------TLSLRME 252 (364)
T ss_pred -h----hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCC-------cHHHHHH
Confidence 1 2444999999999963332 3588887 56777777765555555666666555544444 3667777
Q ss_pred HHHHHHHHHHHHhccCCCc-eee-cCCceEEEEE
Q 014172 363 AFRERRDFLVKSFGELEGV-KMS-EPQGAFYLFI 394 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~-~~~-~p~~~~~~~~ 394 (429)
+.+++...+.+.|++.|++ ++. ++.||++.+.
T Consensus 253 ~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~ 286 (364)
T PRK07269 253 RSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFK 286 (364)
T ss_pred HHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEE
Confidence 7788889999999988875 333 6788885544
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-20 Score=183.46 Aligned_cols=276 Identities=17% Similarity=0.183 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~ 188 (429)
+++..+++.+.+.++. |+...+..+|+++++++++ .++.++++|+++++..++.++ +++||+|+++.|+
T Consensus 9 ~~~~~~~v~~~~~~~~--~~~g~~~~~le~~la~~~g--------~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~ 78 (380)
T TIGR03588 9 DQDDIDAVVEVLKSDF--LTQGPTVPAFEEALAEYVG--------AKYAVAFNSATSALHIACLALGVGPGDRVWTTPIT 78 (380)
T ss_pred CHHHHHHHHHHHhcCC--ccCChhHHHHHHHHHHHHC--------CCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcc
Confidence 3555778888877654 3334467899999999974 234566778999999999998 7899999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc----cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeE
Q 014172 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264 (429)
Q Consensus 189 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~----~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~ 264 (429)
|..+...++..|++++.++++++ ++.+|++++++.++ +++++|++ .|++|...+ +++|.++|++| |++
T Consensus 79 ~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~t~~v~~---~~~~G~~~~---~~~i~~l~~~~-~~~ 150 (380)
T TIGR03588 79 FVATANCALYCGAKVDFVDIDPD-TGNIDEDALEKKLAAAKGKLPKAIVP---VDFAGKSVD---MQAIAALAKKH-GLK 150 (380)
T ss_pred hHHHHHHHHHcCCEEEEEecCCC-cCCcCHHHHHHHhhcccCCCceEEEE---eCCCCccCC---HHHHHHHHHHc-CCE
Confidence 99999999999999999998753 46799999999998 78898885 456898888 89999999999 999
Q ss_pred EEEccCCcccc-cCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEc-CHHHHHHHHHHhhccc--------
Q 014172 265 VLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-PKHFVAACNKIQSQFT-------- 332 (429)
Q Consensus 265 vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~-------- 332 (429)
||+|++++... |++.. +... ..-.+.+.||+ |.++ .| ..|+++. ++++.+.++.......
T Consensus 151 lI~D~a~a~g~~~~~~~---~g~~---~~~d~~~~S~~~~K~~~-~~-~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~ 222 (380)
T TIGR03588 151 IIEDASHALGAEYGGKP---VGNC---RYADATVFSFHPVKIIT-TA-EGGAVTTNDEELAERMRLLRSHGITKDPLLFE 222 (380)
T ss_pred EEEECCCcccCccCCEe---CCCc---cccceEEEecCCCCccc-cc-CceEEEECCHHHHHHHHHHHHCCCCCCccccc
Confidence 99999998642 33321 1110 01247777876 8776 33 4677775 4667776654322110
Q ss_pred -----------------CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC-C---ceEE
Q 014172 333 -----------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-Q---GAFY 391 (429)
Q Consensus 333 -----------------~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-~---~~~~ 391 (429)
...+.+....+...|+ .+++..++.+++.+++.+.|++++++....+ . .+++
T Consensus 223 ~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~-------~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 295 (380)
T TIGR03588 223 KQDEGPWYYEQQELGFNYRMTDIQAALGLSQLK-------KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWH 295 (380)
T ss_pred ccccCcceeeeeccccccCccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEE
Confidence 1112222222222222 2566667777788889999988877664432 1 1222
Q ss_pred EE-EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LF-IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++ +.++...+ .+..++.+.|.++ ||.+
T Consensus 296 ~~~i~~~~~~~---------~~r~~l~~~L~~~-gI~~ 323 (380)
T TIGR03588 296 LYPILLDQEFG---------CTRKEVFEALRAA-GIGV 323 (380)
T ss_pred EEEEEECCcCC---------CCHHHHHHHHHHC-CCCc
Confidence 22 33331000 2678888888654 8864
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-22 Score=188.25 Aligned_cols=221 Identities=19% Similarity=0.216 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 213 (429)
..++++.+|++++ ..+.+++++|+++++..++.+++++||+|+++.|+|.+....+...|++++.++...+.+
T Consensus 61 i~~~~~~~A~~~g-------a~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~ 133 (294)
T cd00615 61 IKEAQELAARAFG-------AKHTFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPY 133 (294)
T ss_pred HHHHHHHHHHHhC-------CCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcc
Confidence 5677788887763 234556699999999999999999999999999999999999999999999998764433
Q ss_pred ----CCCCHHHHHhhcc--cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCcccc
Q 014172 214 ----FLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFAS 286 (429)
Q Consensus 214 ----~~~d~e~l~~~l~--~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~ 286 (429)
..+|++.++++++ ++++++++++| ||+|.+++ +++|+++|++| |+++|+||+|+. +.|.+..+.+..
T Consensus 134 ~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~d---l~~I~~~~~~~-g~~livDeA~~~~~~~~~~~~~~~~- 207 (294)
T cd00615 134 YGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYN---LRKIVEEAHHR-GLPVLVDEAHGAHFRFHPILPSSAA- 207 (294)
T ss_pred cCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecC---HHHHHHHHHhc-CCeEEEECcchhhhccCcccCcchh-
Confidence 3689999999986 46899999998 78999999 89999999999 999999999974 334432221211
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEE-cCHHH--HHHHHHHhhcc-cCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHF--VAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~-~~~~~--~~~l~~~~~~~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
..+.++++.|++|++ +|++.|+++ .+.+. .+.+....... +.+++.+...++..++.. ..+.-.+..+
T Consensus 208 ---~~~~div~~S~hK~l--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~---~~~~g~~~~~ 279 (294)
T cd00615 208 ---MAGADIVVQSTHKTL--PALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAM---MALEGKELVE 279 (294)
T ss_pred ---hcCCcEEEEchhccc--chHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH---HHHHhHHHHH
Confidence 246789999999986 678776554 43331 23333332222 233444444444444432 1112223344
Q ss_pred HHHHHHHHHHHHh
Q 014172 363 AFRERRDFLVKSF 375 (429)
Q Consensus 363 ~~~~~r~~l~~~L 375 (429)
+..++.+.+++.|
T Consensus 280 ~~~~~~~~~r~~l 292 (294)
T cd00615 280 ELIELALYARQEI 292 (294)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=188.69 Aligned_cols=308 Identities=15% Similarity=0.085 Sum_probs=197.2
Q ss_pred cCCCeEEcCCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~---~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|+..|..... .+|.+.+++.+.+....+.. .. -..+..+.+++.+.+..+ .+.+++++++++++.
T Consensus 29 dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~~----~~~~~~~~SGs~A~e 102 (400)
T PTZ00125 29 EGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTS-RA-FYNDVLGLAEKYITDLFG----YDKVLPMNSGAEAGE 102 (400)
T ss_pred CCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccc-cc-ccCHHHHHHHHHHHhCCC----CCEEEEeCCcHHHHH
Confidence 5678999988865443 37889999999876422211 11 113355556666655443 358899999999999
Q ss_pred HHHHHhcC----------CCCEEEEcCCCCCChHHH-HHHcCCEEEE---ecCCCC--CCCCCCHHHHHhhcc-cCCcEE
Q 014172 170 QAVLAVCS----------PGDEVIIPAPFWVSYPEM-ARIADATPVI---LPTRIS--ENFLLDPKVLESKLT-EKSRLL 232 (429)
Q Consensus 170 ~~l~~l~~----------~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~---v~~~~~--~~~~~d~e~l~~~l~-~~~~~i 232 (429)
.+++.... .++.|++.+-+|.+.... ....+..... .+..+. .-...|++.+++.+. +++++|
T Consensus 103 ~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v 182 (400)
T PTZ00125 103 TALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAF 182 (400)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEE
Confidence 99987641 246788888877765433 3332221110 011000 000138999999986 678999
Q ss_pred EEcCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee
Q 014172 233 ILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (429)
Q Consensus 233 ~l~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~ 311 (429)
++..++||||.+++ .+.+++|.++|++| |+++|+||+|.++.+.|... .. ...+.... +.+|||.++.+++|+
T Consensus 183 ~~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~Dev~~g~g~~G~~~-~~-~~~~~~pd---~~~~sK~l~~g~~~i 256 (400)
T PTZ00125 183 IVEPIQGEAGVIVPDDGYLKQVYELCKKY-NVLLIVDEIQTGLGRTGKLL-AH-DHEGVKPD---IVLLGKALSGGLYPI 256 (400)
T ss_pred EEcCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhh-HH-HhcCCCCC---EEEEcccccCCCcCc
Confidence 99889999999996 45699999999999 99999999998765544311 11 11111111 335789998544699
Q ss_pred eEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCceeecCC
Q 014172 312 GYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEPQ 387 (429)
Q Consensus 312 G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g~~~~~p~ 387 (429)
||+++++++++.+.......+++.+.+.+.++.++|+. .++ ....+..+++.+++.+.|+++ +.+....+.
T Consensus 257 g~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~---i~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 331 (400)
T PTZ00125 257 SAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEALEV---LKE--EKLAENAQRLGEVFRDGLKELLKKSPWVKEIRGK 331 (400)
T ss_pred EEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 99999999998876544445566788888888887764 111 122344444555555555543 333334554
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|.++|+.++... ..+..+++++|+++ ||.+
T Consensus 332 -g~~~~v~~~~~~---------~~~~~~~~~~l~~~-Gv~v 361 (400)
T PTZ00125 332 -GLLNAIVFDHSD---------GVNAWDLCLKLKEN-GLLA 361 (400)
T ss_pred -cEEEEEEEccCc---------chHHHHHHHHHHHC-CeEE
Confidence 455777775310 02567899998865 8875
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-21 Score=188.20 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPT 208 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~ 208 (429)
...+|++.++++++ . +..+++++++.++..++.+++++||+|+++.+.|.... ..+...|++++.++.
T Consensus 64 ~~~~le~~lA~l~g-------~-~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (389)
T PRK05968 64 TVRAFEEMLAKLEG-------A-EDARGFASGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVDYVDG 135 (389)
T ss_pred hHHHHHHHHHHHhC-------C-CcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEEEeCC
Confidence 35678888888763 2 23455566678999999999999999999999998643 456678999999874
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
.|++++++++ +++|+|++++|+||++.+ .++++|+++|++| +++||+|++|....+.. ++ .
T Consensus 136 -------~d~~~l~~~i-~~tklV~ie~pt~~~~~~---~dl~~i~~la~~~-gi~vivD~a~a~~~~~~----p~-~-- 196 (389)
T PRK05968 136 -------RDEEAVAKAL-PGAKLLYLESPTSWVFEL---QDVAALAALAKRH-GVVTMIDNSWASPVFQR----PI-T-- 196 (389)
T ss_pred -------CCHHHHHHhc-ccCCEEEEECCCCCCCcH---HHHHHHHHHHHHc-CCEEEEECCCcchhccC----ch-h--
Confidence 2889999988 678999998777776655 4599999999999 99999999997654321 11 1
Q ss_pred CCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHhh-cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~~-~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
.+..+++.|++|.++.+| .+.|++++++++++.++.... ....+.+.+.+..+...|+ .+..+.++..+
T Consensus 197 --~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~-------tl~~r~~~~~~ 267 (389)
T PRK05968 197 --LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLR-------TLPLRMKAHEA 267 (389)
T ss_pred --cCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccC-------cHHHHHHHHHH
Confidence 233588999999997544 578999999998888876543 2334556655555444443 24556666677
Q ss_pred HHHHHHHHhccCCCceee
Q 014172 367 RRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~~~ 384 (429)
+...+.+.|+++|+++.+
T Consensus 268 ~a~~la~~L~~~p~v~~v 285 (389)
T PRK05968 268 SALEIARRLKAHPVVERV 285 (389)
T ss_pred HHHHHHHHHHhCCCccEE
Confidence 788888999988887654
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=189.97 Aligned_cols=321 Identities=18% Similarity=0.162 Sum_probs=213.0
Q ss_pred HHHHHHHHHHhcCC--CeEEcCCCCCCCCChHHHHHHHHHHH-HcCCCCC---CCCCCCHHHHHHHHHHHHhhcCCCCCC
Q 014172 82 AITDQATALAQAGV--SVIRLAAGEPDFDTPVLIAEAGINAI-REGFTRY---TPNAGTLELRSAICHKLKEENGLSYTP 155 (429)
Q Consensus 82 ~~~~~~~~~~~~g~--~~i~L~~g~~~~~~p~~v~~a~~~~~-~~~~~~Y---~~~~G~~~lr~~ia~~l~~~~g~~~~~ 155 (429)
++.+..+++.+... ..--++.|.+++.+|+.+.+++.+.. ....+.| +..+|..+++..+++++.+.+|. +.
T Consensus 53 ~~~~~~~~l~~~n~~~~~~~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~--~~ 130 (481)
T PRK04366 53 EVVRHYTRLSQKNYGVDTGFYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGM--DA 130 (481)
T ss_pred HHHHHHHHHHhcCCCCCcceecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCC--Cc
Confidence 44444555544432 22448889899889999988888752 2345677 35678999999999999999995 33
Q ss_pred CcEEEecChHHHHHHH--HH-HhcCCCC----EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 156 DQILVSNGAKQSILQA--VL-AVCSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 156 ~~i~~t~G~~~al~~~--l~-~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
..+..++|+++.+..+ ++ .++++|| +|++++|.|+.|...++..|++++.++++ .++.+|++.|+++++++
T Consensus 131 ~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~--~~~~~D~e~L~~~i~~~ 208 (481)
T PRK04366 131 VTLQPAAGAHGELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSN--EDGLVDLEALKAAVGED 208 (481)
T ss_pred eEEEeCcHHHHHHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecC--CCCCcCHHHHHhhcccC
Confidence 4555566666655533 22 3457776 99999999999999999999999999985 34679999999999999
Q ss_pred CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc-
Q 014172 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT- 307 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~- 307 (429)
+++|++++|| |||.+ .+++++|+++|+++ +.++++|.++..... +. .+ ++..+..+++++.+|.++.|
T Consensus 209 t~~V~v~~Pn-~tG~~--~~dl~eI~~~a~~~-gal~iVD~a~~~~~~-g~--~~----~~~~GaD~~~~~~hK~l~~P~ 277 (481)
T PRK04366 209 TAALMLTNPN-TLGLF--ERNILEIAEIVHEA-GGLLYYDGANLNAIL-GK--AR----PGDMGFDVVHLNLHKTFSTPH 277 (481)
T ss_pred CeEEEEeCCC-Ccccc--chHHHHHHHHHHHc-CCEEEEEecChhhhc-cc--CC----ccccCCCEEEEechhhcCCCC
Confidence 9999999998 99965 34599999999999 999999999853211 11 11 12245679999999998744
Q ss_pred ---cceeeEEEcCHHHHHHHHHH------h-------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 308 ---GWRLGYIAGPKHFVAACNKI------Q-------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 308 ---G~R~G~v~~~~~~~~~l~~~------~-------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
|..+|++.+.+++.+.+... . +......+.....++..++.. .+.+.+++..++..
T Consensus 278 g~Ggp~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~--~G~~Gl~~~a~~~~ 355 (481)
T PRK04366 278 GGGGPGSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRS--LGAEGLREVSEDAV 355 (481)
T ss_pred CCCCCCeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccccCchHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 46688888887766654200 0 000001112222333333332 13556777777778
Q ss_pred HHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 366 ~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+++.++|+++..+.+..+.-.- ..++.+.. ...+ .+..++.++|.++ ||.+
T Consensus 356 ~~a~~l~~~L~~~~~~~~~~~~~~~-~~~~~~~~---~~~g----~~~~~v~~~L~~~-Gi~~ 409 (481)
T PRK04366 356 LNANYLKARLKDIYDLPYDRPCMHE-FVLSGKKL---KETG----VRTLDIAKRLLDY-GFHP 409 (481)
T ss_pred HHHHHHHHHhHhhCcccCCCCeeEE-EEEECccc---cccC----CCHHHHHHHHHHC-CccC
Confidence 8888999999886233321111111 22332210 0001 2678899998876 7653
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=185.49 Aligned_cols=298 Identities=14% Similarity=0.150 Sum_probs=183.9
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHc-CCCCCCCC--CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIRE-GFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~-~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+..+|+..+. ..+..+|++.+++.+.+.+ +...++.. ....+..+.+++.+.+..|. +.++.++ ++++.
T Consensus 44 ~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~----~~~~~~s-G~~a~ 118 (402)
T PRK07505 44 DGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA----SVLTFTS-CSAAH 118 (402)
T ss_pred CCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC----CEEEECC-hHHHH
Confidence 577899997653 2334589999999998865 21122111 12244555555555555452 4444554 45566
Q ss_pred HHHHHHhc----CCCC-EEEEcCCCCCC-hH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 169 LQAVLAVC----SPGD-EVIIPAPFWVS-YP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 169 ~~~l~~l~----~~gd-~Vlv~~p~y~~-~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
..++..+. .+|+ .|++.+..|.+ .. ......+.+++.+|. .|++.++++++++++++++++|+||
T Consensus 119 ~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~~~~vl~~p~~~ 191 (402)
T PRK07505 119 LGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNKTVAYVADGVYS 191 (402)
T ss_pred HHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCCCEEEEEecccc
Confidence 65665432 2233 35566654443 22 122224567777775 3899999998878899999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCC-ccccCCC-CCCceEEEeccChhcccccceeeEEE-cC
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIA-GP 317 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~-~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~v~-~~ 317 (429)
||.+++ +++|.++|++| ++++|+||+|+...|+..... ....+.. ..+++++++||||.++++| ||++ .+
T Consensus 192 ~G~~~~---~~~i~~l~~~~-~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G---g~~~~~~ 264 (402)
T PRK07505 192 MGGIAP---VKELLRLQEKY-GLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG---GVIMLGD 264 (402)
T ss_pred cCCcCC---HHHHHHHHHHc-CCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC---eEEEeCC
Confidence 999999 88899999999 999999999976555432211 1112222 3578899999999999776 8886 47
Q ss_pred HHHHHHHHHHhhcccC--CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEe
Q 014172 318 KHFVAACNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395 (429)
Q Consensus 318 ~~~~~~l~~~~~~~~~--~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~ 395 (429)
+++++.+......+++ +++.+++.++.++++.. .++++.+..+.++++.+.+...+... ....+.++.++.
T Consensus 265 ~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~g~~~~i~~~~ 337 (402)
T PRK07505 265 AEQIELILRYAGPLAFSQSLNVAALGAILASAEIH--LSEELDQLQQKLQNNIALFDSLIPTE-----QSGSFLPIRLIY 337 (402)
T ss_pred HHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHH--hccCcHHHHHHHHHHHHHHHHHHHhc-----CCCCCCCEEEEE
Confidence 8888888776554433 34556777777777620 13344555555666555443322111 011122222333
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.. .+..+++++|+++ ||.+
T Consensus 338 ~~~~-----------~~~~~~~~~l~~~-Gi~v 358 (402)
T PRK07505 338 IGDE-----------DTAIKAAKQLLDR-GFYT 358 (402)
T ss_pred eCCH-----------HHHHHHHHHHHHC-CCeE
Confidence 3311 1367899999866 8876
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-20 Score=184.24 Aligned_cols=290 Identities=18% Similarity=0.161 Sum_probs=197.8
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCC----HHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGT----LELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~----~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
++++++|+.++ ..+..+|++.++..+++++.-.+-+ -..|. .+|.+++|+++ | .+.+++.+++-
T Consensus 101 ~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~----g----~e~all~sSGy 172 (476)
T PLN02955 101 FKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK----K----KEDCLVCPTGF 172 (476)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH----C----CCcEEEECChH
Confidence 45789999887 7788889999999998875211111 12455 44555555554 4 33455555555
Q ss_pred HHHHHHHHHh--------------cCCCCEEEEcCCCCCChHHHHHHc----CCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 166 QSILQAVLAV--------------CSPGDEVIIPAPFWVSYPEMARIA----DATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 166 ~al~~~l~~l--------------~~~gd~Vlv~~p~y~~~~~~~~~~----g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+...++.++ ..++|.|++..-.|.+....+++. +++++.++.+ |++.|++.++.
T Consensus 173 ~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-------D~~~Le~~L~~ 245 (476)
T PLN02955 173 AANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-------DMYHLNSLLSS 245 (476)
T ss_pred HHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-------CHHHHHHHHHh
Confidence 5555566665 245678888888999999999887 5777777742 88888888743
Q ss_pred ---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 228 ---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 228 ---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
+.++|++....++.|.+.+ +++|.++|++| |.++|+||+|+.++++.........+....+.+|+++||||.+
T Consensus 246 ~~~~~~~Vv~EgV~SmdGdiap---L~eL~~L~~~~-ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~ 321 (476)
T PLN02955 246 CKMKRKVVVTDSLFSMDGDFAP---MEELSQLRKKY-GFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA 321 (476)
T ss_pred CCCCceEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch
Confidence 3456666767899999999 99999999999 9999999999988887543333333333357889999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCC--chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
|..| ||+++++++++.+......+.++. +.....++.++++. ... -...+++++++.+++.+. + |+.
T Consensus 322 G~~G---Gfi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l---~~~-~~~~r~~L~~n~~~fr~~---~-G~~ 390 (476)
T PLN02955 322 GCHG---GFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVV---ARK-EKWRRKAIWERVKEFKAL---S-GVD 390 (476)
T ss_pred hccC---ceeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHH---Hhc-CHHHHHHHHHHHHHHHHh---c-CCC
Confidence 8777 999999999998887655443332 33344445555554 111 124567777777777774 2 554
Q ss_pred eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 383 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+ .+.+ +.+.+... ....+++++|+++ ||.|+
T Consensus 391 ~---~sPI-~pI~ig~~-----------~~a~~~~~~L~~~-Gi~v~ 421 (476)
T PLN02955 391 I---SSPI-ISLVVGNQ-----------EKALKASRYLLKS-GFHVM 421 (476)
T ss_pred C---CCCE-EEEEeCCH-----------HHHHHHHHHHHHC-CCEEE
Confidence 3 1222 34444432 2467889998877 88764
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=184.70 Aligned_cols=300 Identities=14% Similarity=0.160 Sum_probs=201.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++. +|++.+++.+++++.. ..+. ....+....+++.+.+..+ .+.+++++++++++.
T Consensus 33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~-~~~~-~~~~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e 106 (397)
T TIGR03246 33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLW-HIGN-GYTNEPVLRLAKKLVDATF----ADKVFFCNSGAEANE 106 (397)
T ss_pred CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcc-cccC-ccCCHHHHHHHHHHHhhCC----CCEEEEeCCcHHHHH
Confidence 578899998873 34444 8999999999887521 1111 1123445566666665433 368999999999999
Q ss_pred HHHHHhc-------CCC-CEEEEcCCCCCChH-HHHHHcCCE------------EEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 170 QAVLAVC-------SPG-DEVIIPAPFWVSYP-EMARIADAT------------PVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 170 ~~l~~l~-------~~g-d~Vlv~~p~y~~~~-~~~~~~g~~------------~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
.+++... .+| +.|+..+-+|.+.. ......+.. +..++. .|++.+++.+.++
T Consensus 107 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 179 (397)
T TIGR03246 107 AALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAKALISDK 179 (397)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHHHHhccC
Confidence 9998762 123 56777777676654 333433321 222221 2899999999888
Q ss_pred CcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 229 SRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
+++|++..++++.|... +.+.+++|.++|++| |+++|.||+|.++.+.|... ....+ +...-+.+|||.++ .
T Consensus 180 ~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~Gr~G~~~-a~~~~----gv~pDi~t~~K~lg-g 252 (397)
T TIGR03246 180 TCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH-NALLIFDEVQTGVGRTGELY-AYMHY----GVTPDILTSAKALG-G 252 (397)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcCCccccch-hhhhc----CCCCCEEEeehhhh-C
Confidence 88888886666677554 789999999999999 99999999998774444321 11111 11122448999998 8
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---C-cee
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---G-VKM 383 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~---g-~~~ 383 (429)
|+++||+++++++++.+.......+++.+++++.++.++|+. .+ -.++.+.++++.+++.+.|+++. + +..
T Consensus 253 G~pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~l~~---~~--~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~ 327 (397)
T TIGR03246 253 GFPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKVLDL---VN--TPELLAGVKQRHDLFVDGLEKINARYNVFSE 327 (397)
T ss_pred CcceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHHHHH---Hh--hccHHHHHHHHHHHHHHHHHHHHhcCCCeEe
Confidence 999999999999988886544445566788889888888875 12 23567888888899998888752 1 233
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.|.+ +.+.+..... ....++++.|+++ ||.+
T Consensus 328 vrg~G~~-~~i~~~~~~~---------~~~~~~~~~l~~~-Gv~~ 361 (397)
T TIGR03246 328 IRGKGLL-IGAVLTEAYQ---------GKAKQFVNAAAEE-GVIA 361 (397)
T ss_pred eecCceE-EEEEEcCchh---------hHHHHHHHHHHHC-CeEE
Confidence 3445544 4444432100 1467899988877 7764
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.2e-20 Score=177.02 Aligned_cols=272 Identities=21% Similarity=0.331 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~ 188 (429)
-.+.++++.+.+.+++...++ -..+|.+++++|+ ....++.++++|.++.++++++ ++|||+|+++..+
T Consensus 14 ~~~e~~~v~~vl~sg~i~~G~--~v~~FE~~~ae~~--------G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~T 83 (374)
T COG0399 14 GEEELAAVQEVLKSGWLTGGP--FVRRFEQAFAEYL--------GVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFT 83 (374)
T ss_pred chHHHHHHHHHHHcCCeecCh--HHHHHHHHHHHHh--------CCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCc
Confidence 367788888999887766644 4589999999996 4567899999999999999966 6999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 014172 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (429)
Q Consensus 189 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~D 268 (429)
|......+...|+++++++++++ .+.+|++.|+++|++++|+|+ |-+--|...+ +++|.++|++| |++||+|
T Consensus 84 fvATan~i~~~Ga~PVFvDid~~-T~nid~~~ie~aIt~~tKAIi---pVhl~G~~~d---m~~i~~la~~~-~l~vIED 155 (374)
T COG0399 84 FVATANAVLLVGAKPVFVDIDPD-TLNIDPDLIEAAITPRTKAII---PVHLAGQPCD---MDAIMALAKRH-GLPVIED 155 (374)
T ss_pred hHHHHHHHHHcCCeEEEEecCCc-ccCCCHHHHHHHcccCCeEEE---EehhccCCCC---HHHHHHHHHHc-CCeEEEE
Confidence 99999999999999999999874 578999999999999999999 4445788888 99999999999 9999999
Q ss_pred cCCcccc-cCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEcC-HHHHHHHHHHhhccc------------
Q 014172 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT------------ 332 (429)
Q Consensus 269 eay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~------------ 332 (429)
.+++... |.|....++.. +.+.|| .|.+. +| -.|.++++ +++.+.++.++....
T Consensus 156 aAqa~Ga~y~gk~vGt~Gd--------~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~ 225 (374)
T COG0399 156 AAQAHGATYKGKKVGSFGD--------IGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEE 225 (374)
T ss_pred cchhccCeecCcccccccc--------eEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHHHhCcCCCccccceeee
Confidence 9998644 55544333322 557777 58887 55 56888775 567777665543221
Q ss_pred ----CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC-Cc---eEEEE-EecCCccCCc
Q 014172 333 ----SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QG---AFYLF-IDFSTYYGSE 403 (429)
Q Consensus 333 ----~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-~~---~~~~~-~~l~~~~~~~ 403 (429)
+..+.+..+.....| +.+++..++-++..+.+.+.|++++++.+... .+ +++++ +.++.. +
T Consensus 226 ~G~N~rm~~iqAAigl~QL-------~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~-~-- 295 (374)
T COG0399 226 LGYNYRLTEIQAAIGLAQL-------ERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE-G-- 295 (374)
T ss_pred cccccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC-C--
Confidence 112233223233333 33555555556666777778887766554322 22 23222 344321 1
Q ss_pred ccCCCCCCChHHHHHHHHHhCCee
Q 014172 404 AEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.+.+++.+.|.++ ||.
T Consensus 296 -------~~R~~l~~~L~~~-gi~ 311 (374)
T COG0399 296 -------ISRDALMESLKEA-GVG 311 (374)
T ss_pred -------CCHHHHHHHHHhC-CCC
Confidence 2456777776655 664
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-19 Score=180.53 Aligned_cols=202 Identities=15% Similarity=0.181 Sum_probs=148.6
Q ss_pred eEEcCCCCCCCCC-----hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 97 VIRLAAGEPDFDT-----PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 97 ~i~L~~g~~~~~~-----p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
+..|+.|.|+.+. +.+-.+++.+.+..+...+++ ...+|+++++++++ .+++++++|+++++..+
T Consensus 25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~~~G~--~~~~fe~~lA~~~g--------~~~~v~~~sGt~al~~a 94 (438)
T PRK15407 25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWLTTGR--FNDAFEKKLAEFLG--------VRYALLVNSGSSANLLA 94 (438)
T ss_pred cccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcccCCh--hHHHHHHHHHHHhC--------CCeEEEECCHHHHHHHH
Confidence 3447888886654 233344455555544443433 24789999999873 34689999999999998
Q ss_pred HHHh---------cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 172 VLAV---------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 172 l~~l---------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
+.++ +++||+|+++.|+|..+...+...|++++.+++++ .++.+|++.+++.+++++++|+++++ +|
T Consensus 95 L~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~~tkaVi~~~~---~G 170 (438)
T PRK15407 95 FSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSPKTKAIMIAHT---LG 170 (438)
T ss_pred HHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCcCCeEEEEeCC---CC
Confidence 8876 47899999999999999999999999999999875 35779999999999999999998764 56
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc-cCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEcCH-
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGPK- 318 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~~~- 318 (429)
...+ +++|.++|++| |++||+|++|+... |.|.... .+. .+.+.||+ |.+. .|- .|++++++
T Consensus 171 ~p~d---l~~I~~la~~~-gi~vIeDaa~a~G~~~~g~~~G---~~g-----d~~~fSf~~~k~~~-~ge-GG~l~t~d~ 236 (438)
T PRK15407 171 NPFD---LAAVKAFCDKH-NLWLIEDNCDALGSTYDGRMTG---TFG-----DIATLSFYPAHHIT-MGE-GGAVFTNDP 236 (438)
T ss_pred Chhh---HHHHHHHHHHC-CCEEEEECccchhhhcCCeeee---ccC-----ceEEEeCCCCCCcc-ccC-ceEEEECCH
Confidence 6555 89999999999 99999999998643 3332222 221 25677775 6664 343 58988865
Q ss_pred HHHHHHHH
Q 014172 319 HFVAACNK 326 (429)
Q Consensus 319 ~~~~~l~~ 326 (429)
++.+.++.
T Consensus 237 ~l~~~~~~ 244 (438)
T PRK15407 237 LLKKIIES 244 (438)
T ss_pred HHHHHHHH
Confidence 45444443
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=188.32 Aligned_cols=216 Identities=18% Similarity=0.226 Sum_probs=159.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEec
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILP 207 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~ 207 (429)
+....|.+.+|++. | .+..++++|+++++..++..++++||+|+++.+.|.+.. ..++..|++++.++
T Consensus 64 p~~~~Le~~lA~le----g----~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd 135 (431)
T PRK08248 64 PTTDVFEKRIAALE----G----GIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVD 135 (431)
T ss_pred chHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEEC
Confidence 33466777777775 2 357889999999999999999999999999999987633 45667899999998
Q ss_pred CCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 208 ~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
. .|++.+++++++++++|++++|+||||.+++ +++|+++|+++ ++++|+|++|.. +....++
T Consensus 136 ~-------~d~e~l~~ai~~~tklV~l~sp~NPtG~v~d---i~~I~~la~~~-gi~vIvD~t~a~----~~~~~pl--- 197 (431)
T PRK08248 136 P-------SDPENFEAAITDKTKALFAETIGNPKGDVLD---IEAVAAIAHEH-GIPLIVDNTFAS----PYLLRPI--- 197 (431)
T ss_pred C-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEeCCCCc----cccCChh---
Confidence 5 2899999999999999999999999999999 88999999999 999999999863 1111111
Q ss_pred CCCCCceEEEeccChhcccccceeeEEEcC-HHH---------------------------------HHHHHHHhhcccC
Q 014172 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF---------------------------------VAACNKIQSQFTS 333 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~---------------------------------~~~l~~~~~~~~~ 333 (429)
.++.++++.|++|.+|.+|.++|++++. .+. ...........+.
T Consensus 198 --~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 275 (431)
T PRK08248 198 --EHGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGA 275 (431)
T ss_pred --HcCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCC
Confidence 2467799999999999999999998763 211 0111112222333
Q ss_pred CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 334 ~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
..+++....+..- -+-+..+.++..++...+.+.|++.|+++
T Consensus 276 ~l~p~~a~l~~rg-------l~tl~~R~~~~~~nA~~la~~L~~~p~v~ 317 (431)
T PRK08248 276 ALSPFNSFLLLQG-------LETLHLRMERHSENALAVAKFLEEHEAVE 317 (431)
T ss_pred CCCHHHHHHHhcC-------cCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3444433322222 23356677777888888999999887764
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=181.99 Aligned_cols=212 Identities=11% Similarity=0.133 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~ 210 (429)
..|++.+|++.. .+++++++|+++++..++.+++++||+|++++|.|.+.... .+..|+++..++..
T Consensus 53 ~~lE~~lA~l~g--------~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~- 123 (377)
T TIGR01324 53 FALQDAMCELEG--------GAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL- 123 (377)
T ss_pred HHHHHHHHHHhC--------CCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC-
Confidence 588888888752 35899999999999999999999999999999999876543 35678888777531
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
+.+.+++++++++|+|++++|+||+|.+.+ +++|+++|++| |+++|+|++|+..... .++ .
T Consensus 124 ------~~e~l~~~i~~~tklV~lesp~Np~g~~~d---l~~I~~la~~~-g~~livD~t~a~g~~~----~pl-----~ 184 (377)
T TIGR01324 124 ------IGEDIATLIQPNTKVLFLEAPSSITFEIQD---IPAIAKAARNP-GIVIMIDNTWAAGLLF----KPL-----E 184 (377)
T ss_pred ------CHHHHHHhcCCCceEEEEECCCCCCCcHHH---HHHHHHHHHHc-CCEEEEECCCcccccc----Ccc-----c
Confidence 237899999999999999999999998887 99999999999 9999999999863221 111 2
Q ss_pred CCceEEEeccChhccc-ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~-~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~ 369 (429)
.+..+++.|++|.++- ++...|+++++++.++.+.......+.+.++.....+...+ +.+..+.++.+++..
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl-------~tl~~R~~~~~~~a~ 257 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGL-------RTLGVRLKQHQESSL 257 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhh-------hhHHHHHHHHHHHHH
Confidence 4566999999999963 34678999999888877775555555555665444443333 335555667777777
Q ss_pred HHHHHhccCCCc
Q 014172 370 FLVKSFGELEGV 381 (429)
Q Consensus 370 ~l~~~L~~l~g~ 381 (429)
.+.+.|++.|.+
T Consensus 258 ~la~~L~~~p~v 269 (377)
T TIGR01324 258 AIAKWLSEQPEV 269 (377)
T ss_pred HHHHHHHhCCCc
Confidence 788888876654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=183.22 Aligned_cols=220 Identities=11% Similarity=0.143 Sum_probs=162.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEec
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILP 207 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~ 207 (429)
.+....++++++.+....+ .+.. ++++++++++..++.+++++||+|++++|.|.++.. .++..|+++..++
T Consensus 60 R~gnPt~~~Le~~la~le~---~~~~-v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd 135 (395)
T PRK05967 60 TRGTPTTDALCKAIDALEG---SAGT-ILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYD 135 (395)
T ss_pred CCCChHHHHHHHHHHHHhC---CCCE-EEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeC
Confidence 4445566666666654443 3344 555557899999999999999999999999999874 4577899998886
Q ss_pred CCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 208 ~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
.. +.+.+++++++++|+|++++|+||+|.+.+ +++|+++|+++ |+++|+|++|....+- ..+
T Consensus 136 ~~-------~~e~l~~al~~~TklV~lesPsNP~l~v~d---l~~I~~la~~~-g~~vvVD~t~a~p~~~-------~pl 197 (395)
T PRK05967 136 PE-------IGAGIAKLMRPNTKVVHTEAPGSNTFEMQD---IPAIAEAAHRH-GAIVMMDNTWATPLYF-------RPL 197 (395)
T ss_pred CC-------CHHHHHHhcCcCceEEEEECCCCCCCcHHH---HHHHHHHHHHh-CCEEEEECCccCceec-------Chh
Confidence 42 457899999999999999999999887666 99999999999 9999999999753211 111
Q ss_pred CCCCCceEEEeccChhcc-cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 288 PGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
..+..|++.|.+|.++ -.+.-.|+++.++++.+.+.......+.+.++.....+..- .+-+.-+.++..+
T Consensus 198 --~~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rg-------l~Tl~lR~~~~~~ 268 (395)
T PRK05967 198 --DFGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRG-------LRTMGIRLEHHRK 268 (395)
T ss_pred --HcCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcC-------cccHHHHHHHHHH
Confidence 1456699999999974 23467888888887777776555555656666654333322 3345666677777
Q ss_pred HHHHHHHHhccCCCce
Q 014172 367 RRDFLVKSFGELEGVK 382 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~ 382 (429)
+...+.+.|++.|.++
T Consensus 269 na~~lA~~L~~hp~v~ 284 (395)
T PRK05967 269 SALEIARWLEGRPDVA 284 (395)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 8888888888877653
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=186.09 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=156.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH----cCCEEEEec
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILP 207 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~ 207 (429)
+...+|++.+|++. | .+..++++++++++..++.+++++||+|+++.+.|.+....+.. .|+++..++
T Consensus 58 pt~~~Le~~lA~l~----g----~~~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d 129 (425)
T PRK06084 58 PTNDVLEQRVAALE----G----GVGALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAA 129 (425)
T ss_pred chHHHHHHHHHHHh----C----CCceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEEC
Confidence 34567888888775 2 23567788888999999999999999999999999865544432 566776665
Q ss_pred CCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 208 ~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
. .|++.+++++++++++|++++|+||||.+++ +++|.++|++| +++||+|++|+.... ..++ .
T Consensus 130 ~-------~d~e~le~ai~~~tklV~lesp~NPtG~v~d---l~~I~~la~~~-~i~vVvD~a~a~~~~----~~p~-~- 192 (425)
T PRK06084 130 H-------DDIAALEALIDERTKAVFCESIGNPAGNIID---IQALADAAHRH-GVPLIVDNTVATPVL----CRPF-E- 192 (425)
T ss_pred C-------CCHHHHHHHhccCCcEEEEeCCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCccccc----CChh-h-
Confidence 3 3899999999999999999999999999999 89999999999 999999999984321 1111 1
Q ss_pred CCCCCceEEEeccChhcccccceeeEEEcC-HHH--HH----------------------------HH----HHHhhccc
Q 014172 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF--VA----------------------------AC----NKIQSQFT 332 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~--~~----------------------------~l----~~~~~~~~ 332 (429)
.+..+++.|++|.++.+|.++|.+++. ..+ .+ .. .......+
T Consensus 193 ---~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g 269 (425)
T PRK06084 193 ---HGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMG 269 (425)
T ss_pred ---cCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcC
Confidence 345599999999999899999987763 211 00 00 01122234
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
...+.+....+..-| +-+..+.++..++...+.+.|++.|++.
T Consensus 270 ~~l~~~~a~l~lrgl-------~tl~~R~~~~~~na~~la~~L~~~p~v~ 312 (425)
T PRK06084 270 AALSPFNAFLILQGL-------ETLALRMERHTENALKVARYLQQHPQVA 312 (425)
T ss_pred CCCCHHHHHHHHcCc-------CcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 445555433333332 3366677777888888999999887754
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=177.92 Aligned_cols=284 Identities=20% Similarity=0.178 Sum_probs=206.7
Q ss_pred CChHHHHHHHHHHHHcCCC------CCCCC--CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh--c-
Q 014172 108 DTPVLIAEAGINAIREGFT------RYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV--C- 176 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~------~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l--~- 176 (429)
++.+++++++...+...+. .|+-. ....+-|+.||+.++ .++++|++|+|+||+.++++... .
T Consensus 12 p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llg------a~~~eIiFTSG~TEsnNlaI~g~~~a~ 85 (386)
T COG1104 12 PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLG------ADPEEIIFTSGATESNNLAIKGAALAY 85 (386)
T ss_pred CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhC------CCCCeEEEecCCcHHHHHHHHhhHHhh
Confidence 3458899999988765321 12100 123466777777764 57899999999999999999873 2
Q ss_pred ---CCCCEEEEcCCCCCChHHHHHHc---CCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHH
Q 014172 177 ---SPGDEVIIPAPFWVSYPEMARIA---DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 177 ---~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
+.|..|+++.--|+...+.++.+ |.++.++|++. ++.+|+++|+++++++|.+|.|...||.||++.| +
T Consensus 86 ~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~--~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQp---I 160 (386)
T COG1104 86 RNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTILVSIMHANNETGTIQP---I 160 (386)
T ss_pred hcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC--CCeEcHHHHHHhcCCCceEEEEEecccCeeeccc---H
Confidence 24789999999999988887776 99999999975 4569999999999999999999999999999999 9
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHH--HHH---
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACN--- 325 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~--~l~--- 325 (429)
++|.++|+++ ++++++|.++.. |..+..+..+ ..++...|-+|.+|..| +|.++..+.+.- .+.
T Consensus 161 ~ei~~i~k~~-~i~fHvDAvQa~----Gkipi~~~~~----~vD~ls~SaHK~~GpkG--iGaLyv~~~~~~~p~i~GGg 229 (386)
T COG1104 161 AEIGEICKER-GILFHVDAVQAV----GKIPIDLEEL----GVDLLSFSAHKFGGPKG--IGALYVRPGVRLEPLIHGGG 229 (386)
T ss_pred HHHHHHHHHc-CCeEEEehhhhc----Cceecccccc----CcceEEeehhhccCCCc--eEEEEECCCCccCceeccCc
Confidence 9999999999 899999999886 4444444332 23466777789999888 788876543211 111
Q ss_pred HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCceeecC---CceEEEEEecCCccC
Q 014172 326 KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-EGVKMSEP---QGAFYLFIDFSTYYG 401 (429)
Q Consensus 326 ~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l-~g~~~~~p---~~~~~~~~~l~~~~~ 401 (429)
+.........+.++..+...+++. ..+.++....+++..|+.+.+.|.+. |++.+... .-...+.+.+|+.
T Consensus 230 QE~g~RsGTenv~~Ivg~~~A~~~---a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv-- 304 (386)
T COG1104 230 QERGLRSGTENVPGIVGFGKAAEI---AVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGV-- 304 (386)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCC--
Confidence 111111223455555666666665 45667888889999999999999975 77776533 2344566777753
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
..+.+... ++..||++|
T Consensus 305 ----------~gE~ll~~-L~~~gI~vS 321 (386)
T COG1104 305 ----------EGESLLLA-LDLAGIAVS 321 (386)
T ss_pred ----------cHHHHHHh-ccccCeEEe
Confidence 45555554 566799886
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=184.44 Aligned_cols=224 Identities=14% Similarity=0.168 Sum_probs=163.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcC
Q 014172 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIAD 200 (429)
Q Consensus 125 ~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g 200 (429)
.+.|+.. |.+ .++++++++++..| .+++++++|+++++.+++ .++++||+|+++.|.|..+. ..+...|
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~leg----~e~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G 196 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAKLDK----ADRAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSG 196 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCC
Confidence 3567654 654 67888888877654 456777788888887555 67899999999999999876 3455789
Q ss_pred CEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCC
Q 014172 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280 (429)
Q Consensus 201 ~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~ 280 (429)
++++.++. .|++++++++++++|+|++++|+||||.+.+ +++|+++|++| |+++|+|++|......
T Consensus 197 ~~v~~vd~-------~d~e~l~~ai~~~TklV~lesPsNPtG~i~D---l~~I~~lAk~~-g~~lIVD~A~a~~~~~--- 262 (464)
T PLN02509 197 VVVKRVNT-------TNLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKIAEMAHAQ-GALVLVDNSIMSPVLS--- 262 (464)
T ss_pred eEEEEeCC-------CCHHHHHHhCCcCCeEEEEECCCCCCCCHHH---HHHHHHHHHHc-CCEEEEECCccccccC---
Confidence 99988864 3789999999999999999999999999866 99999999999 9999999998753321
Q ss_pred CCccccCCCCCCceEEEeccChhccccc-ceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHH
Q 014172 281 HTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (429)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~ 358 (429)
.++ ..+.++++.|++|.++-+| .=.|++++ ++.+.+.+.........+.+.+....+...| +.+.
T Consensus 263 -~pl-----~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L-------~tL~ 329 (464)
T PLN02509 263 -RPL-----ELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI-------KTMA 329 (464)
T ss_pred -Chh-----hcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhh-------hhHH
Confidence 111 1244599999999986333 23577776 4445555554443333334554433333333 3466
Q ss_pred HHHHHHHHHHHHHHHHhccCCCce
Q 014172 359 KMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.+.++.+++...+.+.|++.|.++
T Consensus 330 ~R~~r~~~nA~~la~~L~~~p~V~ 353 (464)
T PLN02509 330 LRIEKQQENARKIAMYLSSHPRVK 353 (464)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcc
Confidence 777888888999999999887764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=181.11 Aligned_cols=217 Identities=12% Similarity=0.149 Sum_probs=157.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCC-hHH---HHHHcCCEEEEe
Q 014172 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS-YPE---MARIADATPVIL 206 (429)
Q Consensus 131 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~-~~~---~~~~~g~~~~~v 206 (429)
++...+|++.++++.+ ....+++++| +.++..++ .++++||+|+++.|+|.+ |.. .+...|++++.+
T Consensus 49 ~p~~~~Le~~lA~l~g-------~~~~~~~~sG-~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v 119 (377)
T PRK07671 49 NPTRAALEELIAVLEG-------GHAGFAFGSG-MAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFV 119 (377)
T ss_pred ChHHHHHHHHHHHHhC-------CCceEEeCCH-HHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEE
Confidence 3345678888877753 2234555554 56777554 578999999999999984 432 344579999988
Q ss_pred cCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc
Q 014172 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~ 286 (429)
+. .|++.+++++++++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|....+. . ++ .
T Consensus 120 ~~-------~d~~~l~~ai~~~tklV~le~P~NPtg~~~d---l~~I~~la~~~-g~~lvvD~a~~~~~~~--~--p~-~ 183 (377)
T PRK07671 120 DT-------SNLEEVEEAIRPNTKAIYVETPTNPLLKITD---IKKISTIAKEK-GLLTIVDNTFMTPYWQ--S--PI-S 183 (377)
T ss_pred CC-------CCHHHHHHhcCCCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCCccccC--C--hh-h
Confidence 74 3899999999999999999999999999988 89999999999 9999999999753322 1 11 1
Q ss_pred CCCCCCceEEEeccChhccccc-ceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
.+..+++.|+||.++-++ .-.|++++ ++++++.+...+.......+......+... .+.+..+.++.
T Consensus 184 ----~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~-------l~tl~~R~~~~ 252 (377)
T PRK07671 184 ----LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRG-------LKTLGIRMEEH 252 (377)
T ss_pred ----hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcC-------cChHHHHHHHH
Confidence 244699999999997333 34566665 567888888776665555555544333322 23356677777
Q ss_pred HHHHHHHHHHhccCCCcee
Q 014172 365 RERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~g~~~ 383 (429)
.++...+.+.|++.|++..
T Consensus 253 ~~na~~la~~L~~~~~v~~ 271 (377)
T PRK07671 253 ETNSRAIAEFLNNHPAVNK 271 (377)
T ss_pred HHHHHHHHHHHHcCCCeeE
Confidence 8888999999998777543
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=184.16 Aligned_cols=217 Identities=13% Similarity=0.184 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPT 208 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~ 208 (429)
....|++.++++.+ ...++++++++.|+.+++.+++++||+|+++.++|.+.... +...|+++++++.
T Consensus 62 tv~~lE~~la~leg--------~~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~ 133 (432)
T PRK06702 62 TLAAFEQKLAELEG--------GVGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP 133 (432)
T ss_pred HHHHHHHHHHHHhC--------CCcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence 45677788887752 34578899999999999999999999999999999876665 6778999999964
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
.+|++.++++++++||+|++.+|+||++.+.+ +++|+++|++| |+++|+|++|.- +.+.. +
T Consensus 134 ------~~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~D---i~~I~~iA~~~-gi~livD~T~~t--------P~~~~-p 194 (432)
T PRK06702 134 ------NLTADEIVALANDKTKLVYAESLGNPAMNVLN---FKEFSDAAKEL-EVPFIVDNTLAT--------PYLCQ-A 194 (432)
T ss_pred ------CCCHHHHHHhCCcCCeEEEEEcCCCccccccC---HHHHHHHHHHc-CCEEEEECCCCc--------hhhCC-h
Confidence 26899999999999999999999999999999 99999999999 999999999852 11111 1
Q ss_pred CCCCceEEEeccCh-----hccccccee-----eEEEcC-HHHH---------------------HHHH-HHhhcccCCC
Q 014172 289 GMWERTLTVNGFSK-----AFAMTGWRL-----GYIAGP-KHFV---------------------AACN-KIQSQFTSGA 335 (429)
Q Consensus 289 ~~~~~~i~~~S~SK-----~~~~~G~R~-----G~v~~~-~~~~---------------------~~l~-~~~~~~~~~~ 335 (429)
-..+-.|++.|+|| ..+++|.++ +|...+ .+++ .... .....++.+.
T Consensus 195 l~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 274 (432)
T PRK06702 195 FEHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCM 274 (432)
T ss_pred hhcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCC
Confidence 11355599999999 667777776 555432 1111 1111 2233445677
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+.+....+...|+. +..+.++..++...+.+.|++.|.+++
T Consensus 275 sp~~a~l~~rgL~T-------l~lR~~r~~~Na~~la~~L~~~p~V~~ 315 (432)
T PRK06702 275 SPFNAYISNIGLET-------LHLRMERHSENALAVAKWLADHERIEW 315 (432)
T ss_pred CHHHHHHHHhccCc-------HHHHHHHHHHHHHHHHHHHHhCCCcce
Confidence 88877766666654 445556667888899999998877654
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=179.68 Aligned_cols=305 Identities=14% Similarity=0.117 Sum_probs=195.5
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|.. .++- +|++.+++.+.+.+.. .++ .....+....+++.+.+.. ..+.|+++++++++++
T Consensus 13 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~-~~~~~~~~~~la~~l~~~~----~~~~v~f~~sGseA~e 86 (382)
T PLN00144 13 EGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLA-HVS-NVYHTIPQVELAKRLVASS----FADRVFFCNSGTEANE 86 (382)
T ss_pred CCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcC-Ccc-ccccCHHHHHHHHHHHhcC----CCCeEEEeCCcHHHHH
Confidence 5778999988853 3443 7899999999987532 121 1122445566777766442 2368999999999999
Q ss_pred HHHHHhcC----C-----------CCEEEEcCCCCCChHHHHHHcCCEE-E---EecCCCCCCC--CCCHHHHHhhccc-
Q 014172 170 QAVLAVCS----P-----------GDEVIIPAPFWVSYPEMARIADATP-V---ILPTRISENF--LLDPKVLESKLTE- 227 (429)
Q Consensus 170 ~~l~~l~~----~-----------gd~Vlv~~p~y~~~~~~~~~~g~~~-~---~v~~~~~~~~--~~d~e~l~~~l~~- 227 (429)
.+++.... . ..+|+....+|.+....+....... . +.|..+...+ -.|++.+++.+..
T Consensus 87 ~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 166 (382)
T PLN00144 87 AAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG 166 (382)
T ss_pred HHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC
Confidence 98886521 0 2468888888887665444322211 0 0111000000 0278999988853
Q ss_pred CCcEEEEcCCCCCccCCCC--HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCc-cccCCCCCCceEEEeccChhc
Q 014172 228 KSRLLILCSPSNPTGSVYP--KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~--~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~ 304 (429)
++++|++...+|| |.+++ .+.+++|.++|++| |+++|+||+|.++.+.+..... ...+.. + +.||||.+
T Consensus 167 ~~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~-g~llI~DEv~tg~gr~g~~~~~~~~~~~P--D----i~t~sK~l 238 (382)
T PLN00144 167 KTAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEA-GALLVFDEVQCGLGRTGYLWAHEAYGVEP--D----IMTLAKPL 238 (382)
T ss_pred CeEEEEEccccCC-CCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchHhhhhhcCCCC--C----EEEecccc
Confidence 5667776545889 54444 44599999999999 9999999999987665532111 223322 2 88899999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
+ +|.|+||+++++++++.+.......+++.+++++.++.+.|+.-. ..+..++..+.-+..++.+.+.+.+.|.+.-+
T Consensus 239 ~-~G~pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~-~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~v 316 (382)
T PLN00144 239 A-GGLPIGAVLVTEKVASAINPGDHGSTFAGGPLVCNAALAVLDKIS-KPGFLASVAKKGEYLRELLRRKLGGNPHVKEV 316 (382)
T ss_pred c-CCcceEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhhCCCceee
Confidence 8 899999999999999888654455667788999988886665310 01222222222222244444555555443223
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.. .|+++|+.+.. +..+++..++++ ||.+
T Consensus 317 rg-~G~~~~l~l~~-------------~~~~~~~~~~~~-Gv~i 345 (382)
T PLN00144 317 RG-VGLLVGIQLDV-------------PAGPLVDACRDS-GLLV 345 (382)
T ss_pred ec-CceEEEEEecC-------------ccHHHHHHHHHC-CeEE
Confidence 33 78889999831 456888888766 8875
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-20 Score=180.82 Aligned_cols=212 Identities=14% Similarity=0.133 Sum_probs=156.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~ 209 (429)
..+|++.+|++++ ....+++++| +.++..++. ++++||+|++++|.|++.. ..++..|++++.++..
T Consensus 56 ~~~le~~lA~l~g-------~~~~v~~~sG-~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 126 (390)
T PRK08064 56 REALEDIIAELEG-------GTKGFAFASG-MAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDMT 126 (390)
T ss_pred HHHHHHHHHHHhC-------CCCeEEECCH-HHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECCC
Confidence 4677888887753 2245555555 668887775 7789999999999998533 4456789999999862
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
|++.+++.+++++++|++++|+||||.+.+ +++|.++|+++ ++++|+|++|...... .++ .
T Consensus 127 -------d~~~l~~~l~~~tklV~l~~p~NptG~~~d---l~~I~~la~~~-g~~vvvD~a~~~~~~~----~~~-~--- 187 (390)
T PRK08064 127 -------NLEEVAQNIKPNTKLFYVETPSNPLLKVTD---IRGVVKLAKAI-GCLTFVDNTFLTPLLQ----KPL-D--- 187 (390)
T ss_pred -------CHHHHHHhcCCCceEEEEECCCCCCcEecc---HHHHHHHHHHc-CCEEEEECCCCccccc----Cch-h---
Confidence 789999999999999999999999999998 88999999999 9999999999763211 111 1
Q ss_pred CCCceEEEeccChhcc-cccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFA-MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~-~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
.+.++++.|++|.++ .+|...|++++ ++++++.+......++...+...... ++.. .+.+..+.++..++
T Consensus 188 -~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l---~~~g----l~tl~~R~~~~~~~ 259 (390)
T PRK08064 188 -LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWL---VLRG----LKTLHVRLEHSSET 259 (390)
T ss_pred -hCCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHH---HHcc----cCcHHHHHHHHHHH
Confidence 345689999999985 33456787766 56888888887776665555444333 2221 23356666777788
Q ss_pred HHHHHHHhccCCCc
Q 014172 368 RDFLVKSFGELEGV 381 (429)
Q Consensus 368 r~~l~~~L~~l~g~ 381 (429)
+..+.+.|++.|.+
T Consensus 260 a~~la~~L~~~~~v 273 (390)
T PRK08064 260 ANKIALYLQEHPKV 273 (390)
T ss_pred HHHHHHHHhcCCCc
Confidence 88888888876544
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=175.44 Aligned_cols=318 Identities=15% Similarity=0.166 Sum_probs=214.9
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCCCCCC-----hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCc
Q 014172 83 ITDQATALAQAGVSVIRLAAGEPDFDT-----PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 157 (429)
Q Consensus 83 ~~~~~~~~~~~g~~~i~L~~g~~~~~~-----p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~ 157 (429)
..++.+.+++.|.+...|...+-..+. ...+.++....+..+.-.|+.++...+|.+++++++ ..+.
T Consensus 17 ~~~r~~~l~~ag~n~f~l~~~~v~iDLltDsgT~aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~--------G~~~ 88 (450)
T TIGR02618 17 REEREKKMQEAGYNTFLLNSEDVYIDLLTDSGTNAMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELY--------GFKY 88 (450)
T ss_pred HHHHHHHHHHcCCCcccCccCceEEEcccCCCcHHHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHH--------CCCe
Confidence 345666777788777777777632221 255666633333334456988888999999999997 3457
Q ss_pred EEEecChHHHHHHHHHHhcCCCCEEEEcCCCCC-ChHHHHHHcCCEEEEecCCC--------CCCCCCCHHHHHhhccc-
Q 014172 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV-SYPEMARIADATPVILPTRI--------SENFLLDPKVLESKLTE- 227 (429)
Q Consensus 158 i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~--------~~~~~~d~e~l~~~l~~- 227 (429)
++.|++++.+++++....++|||.| +.++|. ++...+...|+.++.++.+. ..++.+|++.|++++++
T Consensus 89 av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~ 166 (450)
T TIGR02618 89 VVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV 166 (450)
T ss_pred EEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccc
Confidence 9999999999998877788999987 667774 44455789999777775431 23477999999999976
Q ss_pred ---CCcEEEEcCCCCC-ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-c-cc-----CCCCCCcc----ccCCCCCC
Q 014172 228 ---KSRLLILCSPSNP-TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-I-IY-----APATHTSF----ASLPGMWE 292 (429)
Q Consensus 228 ---~~~~i~l~~p~NP-tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~-~~-----~~~~~~~~----~~~~~~~~ 292 (429)
++++|.+.+++|- .|.+++.+++++|.++|++| |+.||+|.+... - .| .+....++ ..+.. .
T Consensus 167 ~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~-Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~--~ 243 (450)
T TIGR02618 167 GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAH-GIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMS--Y 243 (450)
T ss_pred cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHc-CCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhc--c
Confidence 3457778888884 58999999999999999999 999999999764 1 11 11122233 11111 1
Q ss_pred ceEEEeccChhcccc-cceeeEEE-cCHHHHHHHHHHhhcccC-----CCchHHHHHHHHHHhcCCCChHHHHHH-HHHH
Q 014172 293 RTLTVNGFSKAFAMT-GWRLGYIA-GPKHFVAACNKIQSQFTS-----GASSISQKAGVAALGLGYAGGEVVSKM-VKAF 364 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~-G~R~G~v~-~~~~~~~~l~~~~~~~~~-----~~~~~~q~aa~~~l~~~~~~~~~~~~~-~~~~ 364 (429)
-..+..|..|..+.+ | |+++ .++++++.+++....+.. +...-...++...|.+ .++.. .+.-
T Consensus 244 aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e------~~~~~y~~~r 314 (450)
T TIGR02618 244 ADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIRE------AVDYEYIEHR 314 (450)
T ss_pred CcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHH------hhhHHHHHHH
Confidence 225788888988755 4 7776 578888888877443311 1122233333334432 23322 2222
Q ss_pred HHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc-CCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
....++|.+.|.+. |+.+..|.+|.-++++..... +.....| ....++-.|..+.||-
T Consensus 315 ~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~~----p~~al~~~ly~~~gir 373 (450)
T TIGR02618 315 VKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQF----PAQSLAASIYVETGVR 373 (450)
T ss_pred HHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhhC----hHHHHHHHHHHHhCcc
Confidence 33467888899888 999888888888999876531 1122233 6889999999998874
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-19 Score=178.06 Aligned_cols=222 Identities=16% Similarity=0.186 Sum_probs=156.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~ 201 (429)
..|+.. |.+ .++++++.+.+..|. ++++++++++.++..++. ++++||+|+++++.|.++.. .+...|+
T Consensus 39 ~~Y~r~-~~p-~~~~le~~la~l~g~----~~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 111 (378)
T TIGR01329 39 YDYTRS-GNP-TRTALESLLAKLDKA----DRAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGV 111 (378)
T ss_pred CccCCC-CCh-HHHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCc
Confidence 456543 322 234444444444452 466777777789987765 78999999999999988654 3456899
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~ 281 (429)
+++.++. .|++.+++++++++|+|++++|+||||.+.+ +++|+++|++| |+++|+|++|.... ..
T Consensus 112 ~v~~vd~-------~d~~~le~~i~~~tklv~le~psnptg~v~d---l~~I~~la~~~-g~~vivD~a~~~~~----~~ 176 (378)
T TIGR01329 112 VVVHVDT-------TDLDKVKAALGPKTKLVLLESPTNPLQKIVD---IRKISEMAHAQ-NALVVVDNTMMSPL----LC 176 (378)
T ss_pred EEEEeCC-------CCHHHHHHhcCcCceEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccc----cC
Confidence 9999986 2899999999999999999999999999999 99999999999 99999999985421 11
Q ss_pred CccccCCCCCCceEEEeccChhccc-ccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~~-~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
.++ . .+..+++.|++|.++- .+.+.|++++ ++.+.+.+.......+.+.+......+...+ +.+..
T Consensus 177 ~~l-~----~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l-------~tl~~ 244 (378)
T TIGR01329 177 NPL-E----LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGI-------KTLAI 244 (378)
T ss_pred Chh-h----cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccC-------CCHHH
Confidence 122 1 2345999999998853 3477999987 4556677776655445455555433222222 23555
Q ss_pred HHHHHHHHHHHHHHHhccCCCc
Q 014172 360 MVKAFRERRDFLVKSFGELEGV 381 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~ 381 (429)
+.++..++...+.+.|++.|.+
T Consensus 245 R~e~~~~na~~la~~L~~~~~v 266 (378)
T TIGR01329 245 RIEKQQENARAIAMFLSTHPRV 266 (378)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 6666667777777777766544
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.9e-20 Score=183.73 Aligned_cols=312 Identities=15% Similarity=0.198 Sum_probs=200.0
Q ss_pred cCCCeEEcCCCCCCC--C-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDF--D-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~--~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|+..|.+.. + .+|.+.+++.+.+.+....|.+..+..+|.+.+++.+ . ..+.+++++++++++.
T Consensus 48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~----~---~~~~v~~~~sGseA~e 120 (426)
T PRK00062 48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELV----P---SIEMVRMVNSGTEATM 120 (426)
T ss_pred CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhC----C---CCCEEEEecCHHHHHH
Confidence 578899999987543 2 4789999999998765444445444455555555543 1 3468999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHHc-CC------------EEE-----EecCCCCCCCCCCHHHHHhhcc---
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIA-DA------------TPV-----ILPTRISENFLLDPKVLESKLT--- 226 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~-----~v~~~~~~~~~~d~e~l~~~l~--- 226 (429)
.+++.... .++.|+..+++|+++...+... |. ..+ .+.. .. .|++.+++.+.
T Consensus 121 ~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~d~~~l~~~i~~~~ 195 (426)
T PRK00062 121 SAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTA--PY---NDLEAVEELFEEYG 195 (426)
T ss_pred HHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEc--CC---CCHHHHHHHHHhCC
Confidence 99988643 2578999999999986433322 11 000 0111 01 27888888775
Q ss_pred cCCcEEEEcCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 227 EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
+++.+|++......+|.+.+ .+.+++|.++|++| |+++|.||+|.++.+++.......... .+ +.+|||.++
T Consensus 196 ~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~G~r~g~~~~~~~~~~~--pD----i~~~gK~l~ 268 (426)
T PRK00062 196 DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEH-GALLIFDEVMTGFRVALGGAQGYYGVT--PD----LTTLGKIIG 268 (426)
T ss_pred CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeechhccccCCccHHHHhCCC--cc----hHhhhhHhh
Confidence 35667777644555898876 78899999999999 999999999998744321111111111 12 578999999
Q ss_pred cccceeeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 306 MTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.||++|++++++++++.+... ....+++.+++.+.++.++|+.-. .++.+++.++..+..++.+.+.+.+. ++.
T Consensus 269 -~G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 345 (426)
T PRK00062 269 -GGLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLK-EPGFYEELEALTKRLAEGLKEAAKKA-GIP 345 (426)
T ss_pred -CCCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHc-CCc
Confidence 899999999999999888532 222345688999999988887521 12355556666666666666555555 433
Q ss_pred e-ecCCceEEEEEecCC-ccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 383 M-SEPQGAFYLFIDFST-YYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 383 ~-~~p~~~~~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
. .++.|.|+. +.+.. ..........+ ......+...|+++ ||.+
T Consensus 346 ~~vrg~G~~~~-i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-Gv~v 392 (426)
T PRK00062 346 LTVNRVGSMFG-LFFTDEPVTNYADAKKSDTERFARFFHAMLDE-GVYL 392 (426)
T ss_pred eEEEEecceEE-EEEecCCCcchhhhccccHHHHHHHHHHHHHC-CeEe
Confidence 3 356676653 33321 00000000000 00135788888876 8875
|
|
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-19 Score=177.24 Aligned_cols=287 Identities=18% Similarity=0.246 Sum_probs=205.5
Q ss_pred CChHHHHHHHHHHHHcCCC-----CCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHHHHHHHHHh---cCC
Q 014172 108 DTPVLIAEAGINAIREGFT-----RYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAV---CSP 178 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~-----~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l---~~~ 178 (429)
+.|+.+++++.+.+.+... .+.......++.+.+.+.+.+..| .++ ++|++++|++.+++.++..+ +++
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg--~~~~~~v~~~~~~t~a~~~~~~~l~~~~~~ 87 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLG--APPDEEVVFTSNGTEALNAVASSLLNPLKP 87 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHT--SSTTEEEEEESSHHHHHHHHHHHHHHHGTT
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcC--Cccccccccccccchhhhhhhhcccccccc
Confidence 4578899999988764211 111111123344444444444455 355 79999999999999999999 789
Q ss_pred CCEEEEcCCCCCChH----HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 179 GDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 179 gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
||+|++..-.|++.. ...+..|++++.++.+.+ ..+|++++++.++++++++++++.+|-||..+| +++|.
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~--~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~p---i~~I~ 162 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPG--GSLDLEDLEEALNPDTRLVSISHVENSTGVRNP---IEEIA 162 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTT--SSCSHHHHHHHHHTTESEEEEESBETTTTBBSS---HHHHH
T ss_pred ccccccccccccccccccccccccchhhhcccccccc--chhhhhhhhhhhccccceEEeecccccccEEee---eceeh
Confidence 999999999888765 344577999999987643 458999999999999999999999999999999 99999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhc----
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ---- 330 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~---- 330 (429)
++|+++ ++++++|.+++. |..+..+.. .+.+++++|..|.+|.+| +|+++.+++.++.+......
T Consensus 163 ~~~~~~-~~~~~vD~~~~~----g~~~id~~~----~~~D~~~~s~~Kl~gp~G--~g~l~v~~~~~~~~~p~~~~~~~~ 231 (371)
T PF00266_consen 163 KLAHEY-GALLVVDAAQSA----GCVPIDLDE----LGADFLVFSSHKLGGPPG--LGFLYVRPEAIERLRPAKPGGGYL 231 (371)
T ss_dssp HHHHHT-TSEEEEE-TTTT----TTSS--TTT----TTESEEEEESTSTTSSST--EEEEEEEHHHHHHHHTSSSSSSTT
T ss_pred hhhhcc-CCceeEechhcc----ccccccccc----cccceeeecccccCCCCc--hhhheehhhhhhcccccccccccc
Confidence 999999 999999999986 222222222 355689999999444444 89999999988887422111
Q ss_pred -----------------ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC-----Cc
Q 014172 331 -----------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-----QG 388 (429)
Q Consensus 331 -----------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-----~~ 388 (429)
...+++.+...++..+++.- .+..+++..++..+..+++.+.|++++++.+..| .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 309 (371)
T PF00266_consen 232 DFPSLQEYGLADDARRFEGGTPNVPAIYALNEALKLL--EEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRP 309 (371)
T ss_dssp THHHHHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGT
T ss_pred ccccchhcccccccccccccceeeehhhhHHHHHhhh--hccccccchhhhhhHHHHHHhhhhcCCceeEeeeccccccc
Confidence 11235555556666666641 1345777888899999999999999988887543 23
Q ss_pred eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+. +.+.++.. +..++.++|.++ ||.+
T Consensus 310 ~i-~~~~~~~~------------~~~~~~~~L~~~-~I~~ 335 (371)
T PF00266_consen 310 SI-VSFNLPGS------------DADDVVKYLEER-GIAV 335 (371)
T ss_dssp TE-EEEEETTS------------SHHHHHHHHHHH-TEEE
T ss_pred ce-EEEeecCC------------CHHHHHHHHhhc-CEEE
Confidence 44 55666543 688999988887 8876
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-19 Score=176.61 Aligned_cols=318 Identities=14% Similarity=0.106 Sum_probs=201.6
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|... ++- +|.+.+++.+++.+.. .........+....+++.+.+..+. ...+.+++++++++++
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~-~~~~~~~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~ 114 (421)
T PRK09792 37 VEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFT-HTAYQIVPYESYVTLAEKINALAPV-SGQAKTAFFTTGAEAV 114 (421)
T ss_pred CCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhcc-CcccCccCCHHHHHHHHHHHHhCCC-CCCceEEEeCChHHHH
Confidence 357889999887633 333 7899999999987532 1111112344555666666654321 1225899999999999
Q ss_pred HHHHHHhcC-CC-CEEEEcCCCCCChHHHHHH-cCC-------------EEEEecCCCCCCCCC----CHHHHHhhcc--
Q 014172 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISENFLL----DPKVLESKLT-- 226 (429)
Q Consensus 169 ~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~~~~----d~e~l~~~l~-- 226 (429)
+.+++.... .| .+|+....+|.+....+.. .|. .++.+|...+. ..+ +++.+++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~-~~~~~~~~~~~l~~~~~~~ 193 (421)
T PRK09792 115 ENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDL-HGISTQDSLDAIERLFKSD 193 (421)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccc-ccccHHHHHHHHHHHHHhc
Confidence 998887642 23 5788888888876433322 221 12233332111 112 3477777775
Q ss_pred ---cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 227 ---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 227 ---~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
++..+|++...++|+|..+ +.+.+++|.++|++| ++++|+||+|.++.+.|. ...+..+....+ +.+|||
T Consensus 194 ~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~-~~a~~~~~~~pD----i~t~gK 267 (421)
T PRK09792 194 IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEH-GIVMIADEVQSGFARTGK-LFAMDHYADKPD----LMTMAK 267 (421)
T ss_pred cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCc-hhHHHhcCCCCc----EEEeeh
Confidence 3466777766689999765 899999999999999 999999999999866553 233333322222 678999
Q ss_pred hcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh-ccCCCc
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF-GELEGV 381 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~l~g~ 381 (429)
.++ +|+|+||+++++++++.+.......+++.+.+++.++.+.++.-. ..+++++.+ .+.++.+...+.| +++|.
T Consensus 268 ~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~-~~~~~~~~~-~~g~~l~~~l~~l~~~~p~- 343 (421)
T PRK09792 268 SLA-GGMPLSGVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIID-KESLCERAN-QLGQRLKNTLIDAKESVPA- 343 (421)
T ss_pred hhc-CCCceEEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHHHH-hhhHHHHHH-HHHHHHHHHHHHHHHhCCC-
Confidence 999 999999999999998887654455667789999997777776411 123444444 3333333333333 33543
Q ss_pred eeecCCc-eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 382 KMSEPQG-AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 382 ~~~~p~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..+.| |+++|+.+++... ..........++..++++ ||.+
T Consensus 344 -v~~vrG~Gl~~~ie~~~~~~----~~~~~~~~~~l~~~~~~~-Gv~i 385 (421)
T PRK09792 344 -IAAVRGLGSMIAAEFNDPQT----GEPSAAIAQKIQQRALAQ-GLLL 385 (421)
T ss_pred -cceecccceEEEEEecCCcc----CCcchHHHHHHHHHHHHC-CcEE
Confidence 234666 8889999964200 000001356788888776 8865
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.1e-19 Score=176.35 Aligned_cols=302 Identities=14% Similarity=0.129 Sum_probs=199.2
Q ss_pred cCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|...... +|++.+++.+.+.+... .++ ....+....+++.+.+.+| .+.+++++++++++.
T Consensus 35 ~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~l~~~~~----~~~~~~~~SGs~A~e 108 (401)
T TIGR01885 35 EGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTL-SSR-AFYNDVFGEFAEYVTKLFG----YDKVLPMNTGAEAVE 108 (401)
T ss_pred CCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccc-ccc-ccCCHHHHHHHHHHHhhcC----CCEEEEeCccHHHHH
Confidence 57789999988655443 79999999998865221 111 1123444555555555544 258999999999999
Q ss_pred HHHHHhc---------CC-CCEEEEcCCCCCCh-HHHHHHcCC------------EEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 170 QAVLAVC---------SP-GDEVIIPAPFWVSY-PEMARIADA------------TPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 170 ~~l~~l~---------~~-gd~Vlv~~p~y~~~-~~~~~~~g~------------~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.++.... .+ .+.|+...-+|.+. ...+...|- .++.++. .|++.+++.+.
T Consensus 109 ~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~ 181 (401)
T TIGR01885 109 TAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALE 181 (401)
T ss_pred HHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHHHHH
Confidence 9988752 13 36777788887753 444443321 1233332 27888888875
Q ss_pred ---cCCcEEEEcCCCCCccCCCCHH-HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 227 ---EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 227 ---~~~~~i~l~~p~NPtG~~~~~~-~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
++..+|++..+++++|.+.+.+ .+++|.++|++| ++++|+||+|..+.+.|.. ... ...+.... + .+|||
T Consensus 182 ~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~g~~G~~-~~~-~~~~~~~d-i--~~~gK 255 (401)
T TIGR01885 182 DHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH-NVLLIADEIQTGLGRTGKL-LCV-DHENVKPD-I--VLLGK 255 (401)
T ss_pred hcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchh-hHH-hhcCCCCC-E--EEeec
Confidence 3566777888899999988655 699999999999 9999999999876554432 111 11111122 2 24789
Q ss_pred hcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC-Cc
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE-GV 381 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~-g~ 381 (429)
.++..|+|+||+++++++++.+.......+++.+++.+.++.++|+. .++ ..+.++.+++.+++.+.|+++. ++
T Consensus 256 ~l~~g~~~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a~L~~---i~~--~~l~~~~~~~~~~~~~~L~~l~~~~ 330 (401)
T TIGR01885 256 ALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAALEV---LEE--EKLAENAEKLGEIFRDQLKKLPKPI 330 (401)
T ss_pred cccCCCCCcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHhccCCc
Confidence 99866699999999999988876533334556788899999888875 222 1344566677888999998872 22
Q ss_pred -eeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 382 -KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 382 -~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
...++.|.|+. +.++.. . ...+..+++++|.++ ||.+
T Consensus 331 ~~~~~g~g~~~~-i~~~~~-~-------~~~~~~~l~~~l~~~-Gv~v 368 (401)
T TIGR01885 331 ITEVRGRGLLNA-IVIDES-K-------TGRTAWDLCLKLKEK-GLLA 368 (401)
T ss_pred eeEEeecCeeEE-EEeccC-c-------chhHHHHHHHHHHhC-CEEE
Confidence 23356676654 333221 0 001467899998765 9875
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.4e-19 Score=174.68 Aligned_cols=214 Identities=14% Similarity=0.152 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPT 208 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~ 208 (429)
....|++.++++. | .+.. +++++++.++.+++ .++++||+|++++|.|.+.. ..+...|++++.++.
T Consensus 51 ~~~~Le~~la~l~----g---~~~a-l~~~SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 51 TRFALEELIADLE----G---GVKG-FAFASGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred hHHHHHHHHHHHh----C---CCCE-EEECCHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 3567777777775 3 2234 44455566888655 57899999999999987653 345668999888874
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
.|++++++++++++++|++++|+||||.+.+ +++|.++|++| ++++|+|++|....+. . ++ .
T Consensus 122 -------~d~e~l~~ai~~~t~lV~lesP~Nptg~~~d---i~~I~~la~~~-gi~vivD~t~a~~~~~-~---p~-~-- 183 (380)
T PRK06176 122 -------SDLSQIKKAIKPNTKALYLETPSNPLLKITD---LAQCASVAKDH-GLLTIVDNTFATPYYQ-N---PL-L-- 183 (380)
T ss_pred -------CCHHHHHHhcCcCceEEEEECCCCCCceecC---HHHHHHHHHHc-CCEEEEECCccccccC-C---cc-c--
Confidence 3899999999999999999999999999999 88999999999 9999999999864322 1 11 1
Q ss_pred CCCCceEEEeccChhccccc-ceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
.+..+++.|++|.++.+| .-.|++++. +++.+.+...+.....+.+......+...+ +.+..+.++..+
T Consensus 184 --~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl-------~tl~~R~~~~~~ 254 (380)
T PRK06176 184 --LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGI-------KTLGLRMEAHQK 254 (380)
T ss_pred --cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc-------CcHHHHHHHHHH
Confidence 345599999999997555 346777764 566677766555444444444433222222 223444455555
Q ss_pred HHHHHHHHhccCCCce
Q 014172 367 RRDFLVKSFGELEGVK 382 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~ 382 (429)
+...+.+.|++.|.+.
T Consensus 255 ~a~~la~~L~~~p~v~ 270 (380)
T PRK06176 255 NALCVAEFLEKHPKVE 270 (380)
T ss_pred HHHHHHHHHHhCCCee
Confidence 6666777777665543
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-18 Score=170.65 Aligned_cols=260 Identities=16% Similarity=0.134 Sum_probs=165.2
Q ss_pred CeEEcCCCC-CCCCChHHHHHHHHHHHHcCC--------CCCCC--CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 96 SVIRLAAGE-PDFDTPVLIAEAGINAIREGF--------TRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 96 ~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~--------~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
++|+|+.++ .++..++.+.+++.+++.+.. +..+. ..|..++.+.+.+.+.+.+|. ++.+++++|+
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---~~~l~~~sG~ 81 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---PEAFIVPSGY 81 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---CeEEEECChH
Confidence 489999888 788888888888887775421 11111 123334444444444444442 3456777776
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCC
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPS 238 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~ 238 (429)
.. +..++..+.++||.|++..-.|.+....++......+.++. .|++.+++.+++ ++++|++++++
T Consensus 82 ~a-~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~v~~v~ 153 (370)
T PRK05937 82 MA-NLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRH-------NDLDHLESLLESCRQRSFGRIFIFVCSVY 153 (370)
T ss_pred HH-HHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHhhhccCCCcEEEEEecCC
Confidence 54 44455666678899988888888888877776544444432 489999988862 35566789999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
|++|.+.| +++|.++|+++ |+++++||+|....++.........+. ..+.++.+.||||.+|..| +.+++.+
T Consensus 154 s~~G~i~p---l~eI~~l~~~~-~~~livDea~~~G~~g~~g~g~~~~~~-~~~~~~~~~tlsK~~g~~G---~~vl~~~ 225 (370)
T PRK05937 154 SFKGTLAP---LEQIIALSKKY-HAHLIVDEAHAMGIFGDDGKGFCHSLG-YENFYAVLVTYSKALGSMG---AALLSSS 225 (370)
T ss_pred CCCCCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCchHHhhC-CCCCcEEEEechhhhhcCc---eEEEcCH
Confidence 99999999 99999999999 999999999986544322111111111 1122367899999999767 3355666
Q ss_pred HHHHHHHHHhh--cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 319 HFVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 319 ~~~~~l~~~~~--~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
++...+..... .+..+.+.+...++.++++. ..+..+..++++++.++++.+.|..
T Consensus 226 ~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~---l~~~~~~~~~~l~~l~~~l~~~l~~ 283 (370)
T PRK05937 226 EVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDF---LSQEGELARKQLFRLKEYFAQKFSS 283 (370)
T ss_pred HHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHH---HHhCcHHHHHHHHHHHHHHHHhcCC
Confidence 66555543211 22334555565555555543 1111234567778888888887764
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-18 Score=174.32 Aligned_cols=287 Identities=12% Similarity=0.086 Sum_probs=192.3
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|.. .++- +|++.+++.+.+.+..+ ........+....+++.+.+..+. -..+.++++++++++++
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~~~~f~~sGseA~e 115 (421)
T PRK06777 38 EGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTH-TAYQIVPYASYVTLAERINALAPI-DGPAKTAFFTTGAEAVE 115 (421)
T ss_pred CCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccc-ccccccCChHHHHHHHHHHHhCCC-CCCceEEEeCCcHHHHH
Confidence 5788999988863 3343 78899999999876321 111111234455666666654321 12368999999999999
Q ss_pred HHHHHhcC-CC-CEEEEcCCCCCChHHHHHH-cCCE-------------EEEecCCCCCC---CCCCHHHHHhhcc----
Q 014172 170 QAVLAVCS-PG-DEVIIPAPFWVSYPEMARI-ADAT-------------PVILPTRISEN---FLLDPKVLESKLT---- 226 (429)
Q Consensus 170 ~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~g~~-------------~~~v~~~~~~~---~~~d~e~l~~~l~---- 226 (429)
.+++.... .| ..|+....+|.+....+.. .|.. +..++...... ..-+++.+++.+.
T Consensus 116 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 195 (421)
T PRK06777 116 NAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIA 195 (421)
T ss_pred HHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccC
Confidence 98886532 23 5688888888876544432 2211 11122111000 0013566777664
Q ss_pred -cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 227 -EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 227 -~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
++..+|++...++..|. +++.+.+++|.++|++| |+++|.||+|.++.+.|. ......+....+ +.+|||.+
T Consensus 196 ~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~g~-~~~~~~~~~~pD----iv~~sK~l 269 (421)
T PRK06777 196 PDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEH-GILLIADEVQTGFARTGK-LFAMEYYDVKPD----LITMAKSL 269 (421)
T ss_pred CCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCccCCc-hhhhhhcCCCCC----EEeeehhh
Confidence 24566666666778885 67899999999999999 999999999998766553 222222321122 34799999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CC
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG 380 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g 380 (429)
+ +|+|+||+++++++++.+.......+++.+++++.++.++|+. .++ +++.++++++.+++.+.|+++ +.
T Consensus 270 ~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~---~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~ 343 (421)
T PRK06777 270 G-GGMPISAVVGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDV---IAE--EKLCQRALILGAHLVEVLEKAKASCPA 343 (421)
T ss_pred c-CCCceEEEEEcHHHHhccCCCCCCCCCCcCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9 9999999999999998887655556777899999999999975 222 356777777888888887764 44
Q ss_pred ceeecCCceEEEE
Q 014172 381 VKMSEPQGAFYLF 393 (429)
Q Consensus 381 ~~~~~p~~~~~~~ 393 (429)
+..+++.|.||.+
T Consensus 344 i~~vrg~G~~~~i 356 (421)
T PRK06777 344 IVDIRARGSMVAV 356 (421)
T ss_pred eEEecCceEEEEE
Confidence 5667899988764
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=169.58 Aligned_cols=274 Identities=19% Similarity=0.286 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCC
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFW 189 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~y 189 (429)
.+..+++.+.+++++... ...-..+|++++++++ ..++++.++++|.||.+++.++ +++||+|+++..+|
T Consensus 5 ~e~~~~v~~~l~s~~~~~-~g~~~~~fE~~~a~~~--------g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~ 75 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLST-YGPYVEEFEKEFAEYF--------GVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTF 75 (363)
T ss_dssp HHHHHHHHHHHHHTCCSS-SSHHHHHHHHHHHHHH--------TSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-
T ss_pred HHHHHHHHHHHHhCCccC-CCHHHHHHHHHHHHHh--------CCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcc
Confidence 566778888887764332 1234578888888887 3568899999999999999998 57999999999999
Q ss_pred CChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 014172 190 VSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (429)
Q Consensus 190 ~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~De 269 (429)
......+...|++++++++++ +++.+|++.+++++++++++|++.+ .-|...+ +++|.++|++| |++||+|.
T Consensus 76 ~~~~~ai~~~G~~pv~~Di~~-~~~~id~~~~~~~i~~~t~ai~~~h---~~G~~~d---~~~i~~~~~~~-~i~lIeD~ 147 (363)
T PF01041_consen 76 PATASAILWAGAEPVFVDIDP-ETLNIDPEALEKAITPKTKAILVVH---LFGNPAD---MDAIRAIARKH-GIPLIEDA 147 (363)
T ss_dssp THHHHHHHHTT-EEEEE-BET-TTSSB-HHHHHHHHHTTEEEEEEE----GGGB------HHHHHHHHHHT-T-EEEEE-
T ss_pred hHHHHHHHHhccEEEEEeccC-CcCCcCHHHHHHHhccCccEEEEec---CCCCccc---HHHHHHHHHHc-CCcEEEcc
Confidence 999999999999999999986 4588999999999999999999644 4677776 99999999999 99999999
Q ss_pred CCcccc-cCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEcC-HHHHHHHHHHhhcc--------------
Q 014172 270 IYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF-------------- 331 (429)
Q Consensus 270 ay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~-------------- 331 (429)
+++... |.|.. +..+. .+.+.|| +|.+. .| ..|+++++ +++.+.++.+....
T Consensus 148 a~a~g~~~~g~~---~G~~g-----d~~~fSf~~~K~i~-~g-eGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 217 (363)
T PF01041_consen 148 AQAFGARYKGRP---VGSFG-----DIAIFSFHPTKIIT-TG-EGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELP 217 (363)
T ss_dssp TTTTT-EETTEE---TTSSS-----SEEEEESSTTSSS--SS-S-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSS
T ss_pred ccccCceeCCEe---ccCCC-----CceEecCCCCCCCc-CC-CCeeEEecHHHHHHHhhhhhccCcCcccccccccccc
Confidence 999754 23321 11221 3778888 48774 33 34888775 56777776554221
Q ss_pred ---cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCCc----eE-EEEEecCCccCC
Q 014172 332 ---TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQG----AF-YLFIDFSTYYGS 402 (429)
Q Consensus 332 ---~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~----~~-~~~~~l~~~~~~ 402 (429)
++.++.+..+.+...|+ .+++..+.-+++.+.+.+.|.+++++... .+.+ .+ ...+.++...
T Consensus 218 ~g~n~rm~~~~AAigl~QL~-------~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~-- 288 (363)
T PF01041_consen 218 PGYNFRMSELQAAIGLAQLK-------RLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEA-- 288 (363)
T ss_dssp S--B-B-BHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCG--
T ss_pred CCcccccHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccc--
Confidence 12244444444444444 36666777778888899999998876443 2222 22 2234444310
Q ss_pred cccCCCCCCChHHHHHHHHHhCCeec
Q 014172 403 EAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 403 ~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+.+++.+.|.++ ||.+
T Consensus 289 -------~~~rd~l~~~L~~~-GI~~ 306 (363)
T PF01041_consen 289 -------LADRDELVEALRAR-GIET 306 (363)
T ss_dssp -------CSTHHHHHHHHHHT-TBEE
T ss_pred -------cchHHHHHHHHHHC-CCcc
Confidence 02578899888776 8864
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=175.24 Aligned_cols=303 Identities=13% Similarity=0.112 Sum_probs=191.4
Q ss_pred cCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|...... +|.+.+++.+.+.+.. +....-..+....+++.+.+..+ .+.+++++++++++.
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~--~~~~~~~~~~~~~la~~L~~~~~----~~~~~f~~SGseA~e 146 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLT--LSSRAFYNDKFPEFAEYLTSMFG----YDMVLPMNTGAEGVE 146 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcC--CcccccCCHHHHHHHHHHHhhcC----CCeEEEeCChHHHHH
Confidence 57789999888654444 7999999999987632 11111122334445555554443 358999999999999
Q ss_pred HHHHHhcC---------CCC-EEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCCCCHHHHHhhcc
Q 014172 170 QAVLAVCS---------PGD-EVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 170 ~~l~~l~~---------~gd-~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+++.... ++. .|+...-+|.+....+...... +..++. -|++.+++.++
T Consensus 147 ~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 219 (474)
T PLN02624 147 TAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-------GDLDALEKIFE 219 (474)
T ss_pred HHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-------CCHHHHHHHHH
Confidence 98875432 133 5777777777654333222111 122221 17888888885
Q ss_pred ---cCCcEEEEcCCCCCccCCCCHH-HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 227 ---EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 227 ---~~~~~i~l~~p~NPtG~~~~~~-~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
+++.+|++..++|++|.+++.+ .+++|.++|++| |+++|.||+|.++.+.|... .. ...+.. .-+.+|||
T Consensus 220 ~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~-gillI~DEv~tG~GrtG~~~-a~-~~~~i~---pDiv~lsK 293 (474)
T PLN02624 220 EDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKH-NVLMIADEIQTGLARTGKML-AC-DWEEVR---PDVVILGK 293 (474)
T ss_pred hCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCcCcCcchh-hH-HhcCCC---CCEEEecc
Confidence 3577888999999999998877 499999999999 99999999998765444211 11 111111 12444799
Q ss_pred hcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----C
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----L 378 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l 378 (429)
.+|.+++++|++++++++++.+.......+++.+.+.+.++.++|+. .++ .++.+...++.+.+.+.|++ +
T Consensus 294 ~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~---l~~--~~l~~~~~~~~~~l~~~L~~l~~~~ 368 (474)
T PLN02624 294 ALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMAALQV---VQD--EKLAERSAKLGQELRDQLQKIQKQF 368 (474)
T ss_pred cccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHHHHHH---HHh--chHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99966699999999998888776554445557888999999998874 111 12233333344444444433 2
Q ss_pred CC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 379 EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 ~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+. +..+.+.|.|+. +.+..... ......+++++|+++ ||.+
T Consensus 369 ~~~i~~vrg~G~~~~-i~l~~~~~-------~~~~a~~~~~~L~e~-GV~v 410 (474)
T PLN02624 369 PKLIKEVRGRGLLNA-VVLNSPKL-------GPVSAYDVCLKLKER-GLLA 410 (474)
T ss_pred CCceEEEEeeEEEEE-EEecCCCc-------ChHHHHHHHHHHHhC-CeEE
Confidence 32 444556666644 44432100 001356889887665 8876
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-18 Score=169.18 Aligned_cols=265 Identities=19% Similarity=0.207 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChH-HHHHHHHHHhcC---CCCEEEEcCCCCCChHHHHHHcCCEEEEecC-
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAVCS---PGDEVIIPAPFWVSYPEMARIADATPVILPT- 208 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~-~al~~~l~~l~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~- 208 (429)
...+.+.+.+.+.+..|.+ ..+..++++|+| .++.+++.++-. +||+|+++.-+|.+...++...|++++.+++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~-~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~~ 181 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLR-SIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIETV 181 (444)
T ss_pred HHHHHHHHHHHHHHHcCCC-CCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeeee
Confidence 4567777777777777743 124688888888 688777776642 5899999999999999999999999999996
Q ss_pred CCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 209 RISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
..+++|.+|++.|+++|++ +..++++.+|+ ||.+...+++++|+++|++| |+++|+|++|+... ..+.
T Consensus 182 ~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~--t~~~g~~ddL~eIa~la~k~-gI~lIvDaAyg~~~------~~~~ 252 (444)
T TIGR03531 182 LDGDELTTDVEDIERAIEEIGPDNILCVLSTTS--CFAPRSPDDIEEIAKICANY-DIPHIVNNAYGLQS------NKYM 252 (444)
T ss_pred ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC--cCCCcchhCHHHHHHHHHHc-CCEEEEECcCcCcC------hhhh
Confidence 2346789999999999986 45666777775 55545555699999999999 99999999998522 1111
Q ss_pred cC--CC-CCCc-eEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHH
Q 014172 286 SL--PG-MWER-TLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM 360 (429)
Q Consensus 286 ~~--~~-~~~~-~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~ 360 (429)
.+ .+ ..++ .+++.|++|.+.++|+ .|.+++ ++++++.+...... ...+.+.|.+...++.. +.++++++
T Consensus 253 ~~~~~g~~~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g--~~~~s~~~~~~~~ll~~---G~~g~~~l 326 (444)
T TIGR03531 253 ELINKAIKVGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPG--RASASPSLDVLITLLSL---GSKGYLEL 326 (444)
T ss_pred hhhhccccccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccC--CCCChHHHHHHHHHHHh---CHHHHHHH
Confidence 11 00 0122 5778899999998887 344446 67888877664222 22456788888888877 57899999
Q ss_pred HHHHHHHHHHHHHHhccC---CCceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHh
Q 014172 361 VKAFRERRDFLVKSFGEL---EGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423 (429)
Q Consensus 361 ~~~~~~~r~~l~~~L~~l---~g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 423 (429)
.+++.++++++.+.|+++ -|.++.. |...+-+-+.+....+ .+...+...|..+
T Consensus 327 i~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~~---------~~~~~~g~~l~~~ 384 (444)
T TIGR03531 327 LKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLKG---------KDPTMLGSMLYSR 384 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEecccccc---------cCHHHHHHHHHhC
Confidence 999999999999999886 2556553 3444445555543211 2566777777654
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=173.04 Aligned_cols=294 Identities=13% Similarity=0.063 Sum_probs=181.5
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|.- .++- +|++.+++.+.+.+..+ +.......+.+..+++.+.+.... ...+.+++++++++++
T Consensus 30 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~-~~~~~~~~~~~~~la~~l~~~~p~-~~~~~v~f~~sGseA~ 107 (420)
T TIGR00700 30 VDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTH-TCFMVTPYEGYVALAEKLNRIAPG-SGPKKSVFFNSGAEAV 107 (420)
T ss_pred CCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccC-ccccccCChHHHHHHHHHHHhCCC-CCCCEEEEeCCcHHHH
Confidence 35788999988863 3333 78999999999876321 111112234455566666554321 1225899999999999
Q ss_pred HHHHHHhcC--CCCEEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCC---------CCCCCHHHHHh
Q 014172 169 LQAVLAVCS--PGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISE---------NFLLDPKVLES 223 (429)
Q Consensus 169 ~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~---------~~~~d~e~l~~ 223 (429)
+.+++.... ....|+...-+|.+....+... |- .+..++..... .+.-+++.+++
T Consensus 108 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (420)
T TIGR00700 108 ENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARA 187 (420)
T ss_pred HHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHH
Confidence 998886532 2356888888888765433322 11 11222221000 00002456666
Q ss_pred hcc-----cCCcEEEEcCCCCCccCCCCHH-HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 224 KLT-----EKSRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 224 ~l~-----~~~~~i~l~~p~NPtG~~~~~~-~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
.+. ++..+|++...+.-+|.+++.+ .+++|.++|++| |+++|+||+|.+|.+.+. ...+... +....+
T Consensus 188 ~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tg~gr~g~-~~a~~~~----~~~pDi 261 (420)
T TIGR00700 188 IFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREH-GIVFIADEVQTGFARTGA-MFACEHE----GPEPDL 261 (420)
T ss_pred HHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEecccCCcccch-hHHHhhc----CCCCCE
Confidence 552 3455666655566688866555 599999999999 999999999999866553 2222222 122225
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.+|||.++ +|+|+||+++++++++.+.......+++.++++|.++.++|+.-. .+...+...+..+..++.+.+..+.
T Consensus 262 ~~lsK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~-~~~~~~~~~~~g~~l~~~L~~l~~~ 339 (420)
T TIGR00700 262 ITTAKSLA-DGLPLSGVTGRAEIMDAPAPGGLGGTYAGNPLACAAALAVLAIIE-SEGLIERARQIGRLVTDRLTTLKAV 339 (420)
T ss_pred EEeecccc-CCcceEEEEecHHHHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhh
Confidence 56999999 999999999999999888655555677789999999988776310 1222333333333334434333334
Q ss_pred CCCceeecCCceEEEEEec
Q 014172 378 LEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l 396 (429)
++.+..+++.| .++|+.+
T Consensus 340 ~~~~~~vrg~G-~~~~i~~ 357 (420)
T TIGR00700 340 DPRIGDVRGLG-AMIAVEL 357 (420)
T ss_pred CCCEEEeeccc-eEEEEEE
Confidence 55555566775 4467766
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-18 Score=168.72 Aligned_cols=308 Identities=14% Similarity=0.127 Sum_probs=202.9
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|.. .++- +|.+.+++.+.+.+..+ ++. .-..+....+++.+.+..+ ..+.+++++++++++
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~-~~~~~~~~~la~~L~~~~~---~~~~v~f~~sGseA~ 111 (408)
T PRK04612 37 DQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWH-TSN-VFYSAPPLKLAEELVTASR---FAEKVFLCNSGTEAN 111 (408)
T ss_pred CCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccc-ccCCHHHHHHHHHHHhhCC---CCCEEEEcCchHHHH
Confidence 35788999988863 3443 78999999998875322 222 1223455667777765432 126899999999999
Q ss_pred HHHHHHhcC--------CC-CEEEEcCCCCCChHHHHHH-cCCEEEE---ecCCCC---CCCCCCHHHHHhhcccCCcEE
Q 014172 169 LQAVLAVCS--------PG-DEVIIPAPFWVSYPEMARI-ADATPVI---LPTRIS---ENFLLDPKVLESKLTEKSRLL 232 (429)
Q Consensus 169 ~~~l~~l~~--------~g-d~Vlv~~p~y~~~~~~~~~-~g~~~~~---v~~~~~---~~~~~d~e~l~~~l~~~~~~i 232 (429)
+.+++.... ++ .+|+....+|.+....+.. .|..... -+..+. -.+ .|++.+++.+.++..+.
T Consensus 112 e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~~aa 190 (408)
T PRK04612 112 EAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMAGGDVAA 190 (408)
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhCCCCEEE
Confidence 999877531 12 4688888888876544332 2211100 011100 011 27899998887666777
Q ss_pred EEcCCCCCccCCCC--HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccce
Q 014172 233 ILCSPSNPTGSVYP--KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (429)
Q Consensus 233 ~l~~p~NPtG~~~~--~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 310 (429)
++..|.+++|.+++ .+.+++|.++|++| ++++|+||+|.++.+.|.. +... ..+.+..+.+|||.++ +|+|
T Consensus 191 vi~eP~~~~gg~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tg~gr~G~~---~a~~--~~~~~pdi~t~~K~l~-~G~p 263 (408)
T PRK04612 191 VMLEPIQGEGGVMPAAPGFLARVRALCDQH-DALLVLDEIQCGMGRTGTL---FAHW--QEQVTPDIVTLAKALG-GGFP 263 (408)
T ss_pred EEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCch---hhhh--hcCCCCCEEEEcchhc-CCCc
Confidence 88888888887766 56899999999999 9999999999986554421 1111 1345567889999999 8999
Q ss_pred eeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCceeecC
Q 014172 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSEP 386 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g~~~~~p 386 (429)
+||+++++++++.+.......+++.+++.+.++.+.|+. .++ .++.+..+++-+++.+.|+++ +-+..++.
T Consensus 264 iga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~---~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg 338 (408)
T PRK04612 264 IGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARVALRK---LAS--PQIAANVARQSAALRAGLEALNAEFGVFAQVRG 338 (408)
T ss_pred eEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeec
Confidence 999999999888876555556667889999999998875 221 245555566666666666553 22334456
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|-| +-+.+.... .....++++.|+++ ||.+
T Consensus 339 ~Gl~-~~i~~~~~~---------~~~a~~i~~~l~~~-Gvlv 369 (408)
T PRK04612 339 RGLM-LGAVLAPAH---------AGQAGAILDLAAEH-GLLL 369 (408)
T ss_pred cceE-EEEEecCch---------hhHHHHHHHHHHHC-CeEE
Confidence 6644 455553100 01356777777665 8875
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=164.71 Aligned_cols=320 Identities=13% Similarity=0.123 Sum_probs=209.0
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCCC--CCC---hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCc
Q 014172 83 ITDQATALAQAGVSVIRLAAGEPD--FDT---PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 157 (429)
Q Consensus 83 ~~~~~~~~~~~g~~~i~L~~g~~~--~~~---p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~ 157 (429)
..++.+.+++.|.+...|...+-. +-+ ...+.+++...+.-+.-.|+.++...+|.+++++++. .+.
T Consensus 24 ~~~r~~~l~~ag~n~f~l~~~~v~IDLlSDS~T~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~vAe~lG--------~e~ 95 (460)
T PRK13237 24 RAEREAAMKEAGYNTFLLRSEDVYIDLLTDSGTNAMSDRQWAGMMIGDEAYAGSRNFYHLEETVQEYYG--------FKH 95 (460)
T ss_pred HHHHHHHHHHcCCCcccCCcCcEEEECcccCCchhccHHHHHHHhhcchhhcCCCcHHHHHHHHHHHHC--------CCe
Confidence 345666677777777777666622 211 1445555444444455679888889999999999973 456
Q ss_pred EEEecChHHHHHHHHHHhcCCCCEEEEcCCCCC-ChHHHHHHcCCEEEEecCC--------CCCCCCCCHHHHHhhcccC
Q 014172 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWV-SYPEMARIADATPVILPTR--------ISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 158 i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~--------~~~~~~~d~e~l~~~l~~~ 228 (429)
++.+++++.++.+++...++|||.| +..+|. .....+...|+..+.+..+ ...++.+|++.|+++++++
T Consensus 96 aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~ 173 (460)
T PRK13237 96 VVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV 173 (460)
T ss_pred EEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccc
Confidence 9999999999998777778999975 444344 4444478889866555321 1235779999999999753
Q ss_pred ----CcEEEEcCCCCCc-cCCCCHHHHHHHHHHHHhCCCeEEEEccCCccc----cc---CCCCCCcccc----CCCCCC
Q 014172 229 ----SRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI----IY---APATHTSFAS----LPGMWE 292 (429)
Q Consensus 229 ----~~~i~l~~p~NPt-G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~----~~---~~~~~~~~~~----~~~~~~ 292 (429)
++++.+..++|.. |...|.+++++|.++|++| |+.||+|.+...- +- .+....++.. +. .-
T Consensus 174 ~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~-Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~--s~ 250 (460)
T PRK13237 174 GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKH-GIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMF--SY 250 (460)
T ss_pred cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHc-CCEEEEECcchhcChhhhcccccccCCCcHhHHhhhcc--Cc
Confidence 3456677788877 7999999999999999999 9999999997632 10 1111122211 11 12
Q ss_pred ceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhccc-----CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFT-----SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~-----~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
-.+.+.|++|.++.+ . .|++++ ++++.+.++...-.+. .+.+.-...++...|.+.. ..+++ +.--.
T Consensus 251 aD~~t~S~~K~~~~~-~-GG~i~t~D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~-~~~y~----~~ri~ 323 (460)
T PRK13237 251 ADGCTMSGKKDCLVN-I-GGFLAMNDEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESV-QYEYI----EHRVG 323 (460)
T ss_pred CcEEEEeCCCCCCCC-C-ceEEEECCHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhc-hHHHH----HHHHH
Confidence 236788899998744 1 377776 5678888776632221 1222223333333343311 12333 33334
Q ss_pred HHHHHHHHhccCCCceeecCCceEEEEEecCCcc-CCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
..++|.+.|.+. |+.++.|.||.-+|++..... +.....| ....++..|..+.||-
T Consensus 324 ~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~~~~~----p~~al~~~ly~~~GiR 380 (460)
T PRK13237 324 QVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLPQDQF----PAQALAAELYIESGVR 380 (460)
T ss_pred HHHHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCCcccC----hHHHHHHHHHHHhCcC
Confidence 557788888776 999999999999999875531 1122233 6889999999998874
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=170.49 Aligned_cols=295 Identities=15% Similarity=0.104 Sum_probs=191.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcC---C--CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREG---F--TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~---~--~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
++.+.|+.+.-. +.|+.+.+++.+.+... . ..+....+...+.+++.+ + +..| .++++|++|+|+|++++
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g--~~~~~v~~~~~~t~~l~ 100 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVG--AKEDEVVVMNTLTINLH 100 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccC--CCCCcEEEeCCchHHHH
Confidence 457999977655 34788888887765431 0 111101122233333333 2 4455 46889999999999999
Q ss_pred HHHHHhcCCC---CEEEEcCCCCCChHH----HHHHcCCEE----EEecCCCCCCCCCCHHHHHhhc---ccCCcEEEEc
Q 014172 170 QAVLAVCSPG---DEVIIPAPFWVSYPE----MARIADATP----VILPTRISENFLLDPKVLESKL---TEKSRLLILC 235 (429)
Q Consensus 170 ~~l~~l~~~g---d~Vlv~~p~y~~~~~----~~~~~g~~~----~~v~~~~~~~~~~d~e~l~~~l---~~~~~~i~l~ 235 (429)
.++..++++| +.|++....|++... .++..|+++ +.++.+ .++.+|++.+++.+ ++++++|+++
T Consensus 101 ~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~~t~lv~~~ 178 (406)
T TIGR01814 101 LLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPR--EEETLRLEDILDTIEKNGDDIAVILLS 178 (406)
T ss_pred HHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccC--CCCccCHHHHHHHHHhcCCCeEEEEEe
Confidence 9999887664 368888899987433 345678887 455543 34557999998877 3689999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEE
Q 014172 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYI 314 (429)
Q Consensus 236 ~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v 314 (429)
+++|.||.+++ +++|.++|+++ |+++++|++++. |..+..+.. .+..+++.|.+|+++ .+| |.+
T Consensus 179 ~v~~~tG~~~~---~~~i~~~~~~~-g~~~~vD~aq~~----G~~~id~~~----~gvD~~~~s~hK~l~g~pG---~~l 243 (406)
T TIGR01814 179 GVQYYTGQLFD---MAAITRAAHAK-GALVGFDLAHAV----GNVPLDLHD----WGVDFACWCTYKYLNAGPG---AGA 243 (406)
T ss_pred ccccccceecC---HHHHHHHHHHc-CCEEEEEccccc----CCccccccc----CCCCEEEEcCccccCCCCC---eEE
Confidence 99999999999 99999999999 999999999986 332223222 356699999999874 344 434
Q ss_pred EcCHHHHHHHHHH-hh----------------------cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 014172 315 AGPKHFVAACNKI-QS----------------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (429)
Q Consensus 315 ~~~~~~~~~l~~~-~~----------------------~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l 371 (429)
+..++....+... .. ....+++.....++.++++.- .+..+++..++.++..+++
T Consensus 244 ~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l 321 (406)
T TIGR01814 244 FVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIF--DQAGMEALRKKSLLLTDYL 321 (406)
T ss_pred EEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHH
Confidence 3332222222110 00 001234555555555566531 0223567778888888888
Q ss_pred HHHhccC----CCceeecCC-----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 372 VKSFGEL----EGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 372 ~~~L~~l----~g~~~~~p~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.|+++ +|+++..|. +++ +.+.++ . +..++.++|.++ ||.+
T Consensus 322 ~~~l~~~~~~~~~~~i~~~~~~~~r~~~-v~~~~~-~------------~~~~~~~~L~~~-gi~v 372 (406)
T TIGR01814 322 EELIKARCGGPPVLTIITPRDHAQRGCQ-LSLTHP-V------------PGKAVFQALIKR-GVIG 372 (406)
T ss_pred HHHHHhhcCCCCceEEeCCCChhhcCCe-EEEEec-C------------CHHHHHHHHHHC-CEEE
Confidence 8888774 357776542 233 555665 2 567888888655 8875
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-18 Score=171.85 Aligned_cols=290 Identities=16% Similarity=0.102 Sum_probs=178.4
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|.- .++- +|.+.+++.+.+++..+ .+......+....+++.+.+..+.. ..+.++++++++++.+
T Consensus 52 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~~~~la~~L~~~~p~~-~~~~v~f~~sGseA~e 129 (451)
T PRK06918 52 DGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIH-TGFNVMMYEPYIELAEKLAALAPGS-FDKKVLFLNSGAEAVE 129 (451)
T ss_pred CCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccC-ccccccccHHHHHHHHHHHHhCCCC-CCCEEEEcCCcHHHHH
Confidence 5788999988863 3343 78899999998876321 1111122455666777776554311 1158999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCC--CCCCC--------HHHHHh
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISE--NFLLD--------PKVLES 223 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~--~~~~d--------~e~l~~ 223 (429)
.+++.... ....|+....+|++....+... |- .+..+|..... ..... .+.+++
T Consensus 130 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (451)
T PRK06918 130 NAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKN 209 (451)
T ss_pred HHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHH
Confidence 99887532 2256888888888765444332 21 12223321100 00011 122333
Q ss_pred hc----ccCCcEEEEcCCCCC-ccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 224 KL----TEKSRLLILCSPSNP-TGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 224 ~l----~~~~~~i~l~~p~NP-tG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
.+ .++..+.+|..|-.. .|.++ +.+.+++|.++|++| |+++|+||+|.++.+.+. ..++..++...+ +
T Consensus 210 ~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~-gillI~DEV~tg~gr~g~-~~a~~~~~v~pD----i 283 (451)
T PRK06918 210 FFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEH-GILFVADEIQTGFARTGK-YFAIEHFDVVPD----L 283 (451)
T ss_pred HHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCcCccCc-eehhHhcCCCCC----E
Confidence 32 223344555566444 46645 455699999999999 999999999999876653 233333332122 5
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.||||.++ +|+|+||+++++++++.+.......+++.+.+++.++.++|+.-. ++.+ .+..++.++.+.++|++
T Consensus 284 ~t~sK~l~-~G~pig~v~~~~~i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~--~~~~---~~~~~~~g~~l~~~l~~ 357 (451)
T PRK06918 284 ITVSKSLG-AGVPISGVIGRKEIMDESAPGELGGTYAGSPLGCAAALAVLDIIE--KENL---NDRAIELGKVVMNRFEE 357 (451)
T ss_pred Eeeehhhc-CCCccEEEEEcHHHHhccCCCCcCcCCCcCHHHHHHHHHHHHHHH--HCCH---HHHHHHHHHHHHHHHHH
Confidence 58999999 999999999999999888655555677889999999888776310 1111 22222233333333332
Q ss_pred ----CCCceeecCCceEEEEEec
Q 014172 378 ----LEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 378 ----l~g~~~~~p~~~~~~~~~l 396 (429)
.+.+..+.+.|+|+.|...
T Consensus 358 l~~~~~~~~~vrg~G~~~~~~~~ 380 (451)
T PRK06918 358 MKNKYNCIGDVRGLGAMCAFELV 380 (451)
T ss_pred HHhhCCCceeeccceeEEEEEEc
Confidence 3334445678888877654
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=166.68 Aligned_cols=301 Identities=16% Similarity=0.091 Sum_probs=182.3
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHH-HcCCCCCCCC---CC---CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAI-REGFTRYTPN---AG---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~-~~~~~~Y~~~---~G---~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
.+.++|-..++.. +|.+.+++...+ .....+|+.+ .| ..+|.+...+.+++.+|. ...++.+++|+.+
T Consensus 28 ~~~~~l~~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~---~~alv~~~SG~~A 102 (416)
T PRK13034 28 QDHLELIASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGC---DYANVQPHSGSQA 102 (416)
T ss_pred hcCeeecccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCC---CceEEecCCcHHH
Confidence 4578888888774 788888888875 3211111111 12 334444111255555552 2333456788999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCCh-HHHHHH--cCCEE--EEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCc
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSY-PEMARI--ADATP--VILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 241 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~-~~~~~~--~g~~~--~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPt 241 (429)
+..++.+++++||+|+++..+|.+. ...++. .+... +.++++.. ++.+|++++++.+.. ++|+|++.++. +
T Consensus 103 ~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~klVi~~~~~--~ 179 (416)
T PRK13034 103 NGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRL-TGLIDYDEVEELAKEHKPKLIIAGFSA--Y 179 (416)
T ss_pred HHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccc-cCCcCHHHHHHHHhhcCCeEEEECCCc--c
Confidence 9999999999999999999998772 222222 12222 34544332 456899999998853 67888776654 4
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH-
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF- 320 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~- 320 (429)
|...+ +++|.++|++| |+++|+|++++...+.... ....+ ....++++|++|.++ |...|+++++++.
T Consensus 180 g~~~d---l~~l~~la~~~-g~~livD~Aha~G~~~~g~--~~~~~---~~~Di~~~s~~K~l~--g~~GG~v~~~~~~~ 248 (416)
T PRK13034 180 PRELD---FARFREIADEV-GALLMVDMAHIAGLVAAGE--HPNPF---PHAHVVTTTTHKTLR--GPRGGMILTNDEEI 248 (416)
T ss_pred ccccC---HHHHHHHHHHc-CCEEEEeCcccccCcccCC--CCCCC---CCceEEEEeCcccCC--CCCCeEEEECcHHH
Confidence 67777 88899999999 9999999999875543211 11111 235589999999993 2234888776544
Q ss_pred HHHHHHHhhcc-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC-CceEEEEEecCC
Q 014172 321 VAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 398 (429)
Q Consensus 321 ~~~l~~~~~~~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-~~~~~~~~~l~~ 398 (429)
.+.++...... ..++......++..++... .+....+.+++..++.+++.+.|.++ |+.+..+ ..+..+++.+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~ 325 (416)
T PRK13034 249 AKKINSAVFPGLQGGPLMHVIAAKAVAFGEA--LQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRP 325 (416)
T ss_pred HHHHHhhcCCcccCCccHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCC
Confidence 44444322211 1122233333333233220 11223456788889999999999988 8887642 223336666653
Q ss_pred ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 399 YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. + .+...+.++| ++.||.+
T Consensus 326 ~-~---------~~~~~~~~~L-~~~GI~v 344 (416)
T PRK13034 326 K-G---------LSGKDAEQAL-ERAGITV 344 (416)
T ss_pred C-C---------CCHHHHHHHH-HhCCcEE
Confidence 2 0 1344455555 5558876
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=170.69 Aligned_cols=214 Identities=14% Similarity=0.136 Sum_probs=154.2
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~ 209 (429)
..+|++.++++. | .+..++++++++++.+++.+++++||+|+++.+.|.+.. ..+...|++++.++.
T Consensus 65 ~~~le~~lA~l~----g----~~~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~- 135 (427)
T PRK05994 65 NAVLEERVAALE----G----GTAALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA- 135 (427)
T ss_pred HHHHHHHHHHHh----C----CCcEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC-
Confidence 456777777765 3 235788899999999999999999999999999998643 346778999999875
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
.|++.+++++++++++|++++|+||||.+++ +++|.++|++| ++++|+|++|.... ...++
T Consensus 136 ------~d~~~l~~ai~~~tklV~vesp~NptG~v~d---l~~I~~la~~~-gi~livD~a~a~~~----~~~pl----- 196 (427)
T PRK05994 136 ------DDPASFERAITPRTKAIFIESIANPGGTVTD---IAAIAEVAHRA-GLPLIVDNTLASPY----LIRPI----- 196 (427)
T ss_pred ------CCHHHHHHhcCcCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCccccc----cCCcc-----
Confidence 2789999999999999999999999999999 89999999999 99999999997421 11111
Q ss_pred CCCceEEEeccChhcccccceeeEEEcC-HH-----------------------HHHHHH----------HHhhcccCCC
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGP-KH-----------------------FVAACN----------KIQSQFTSGA 335 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~-----------------------~~~~l~----------~~~~~~~~~~ 335 (429)
..+..+++.|++|.+|-+|-.+|.+++. .. +.+.+. ......+...
T Consensus 197 ~~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 276 (427)
T PRK05994 197 EHGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAI 276 (427)
T ss_pred ccCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCC
Confidence 1345599999999998667666765542 10 111100 1122223334
Q ss_pred chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 336 ~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
+.+....+..-| +.+..+.++..++...+.+.|++.|+++
T Consensus 277 ~~~~A~l~~~~l-------~tL~~r~~~~~~~a~~la~~L~~~p~v~ 316 (427)
T PRK05994 277 SPFNAFLILTGI-------ETLPLRMQRHSDNALAVAEWLKGHPKVS 316 (427)
T ss_pred CHHHHHHHHcCc-------ccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 444433333222 3466677777788888889998887754
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-17 Score=165.83 Aligned_cols=317 Identities=12% Similarity=0.117 Sum_probs=193.8
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++- +|.+.+++.+.+.+.. .+.......+.+..+|+.+.+..+. ..+.|++++++++++
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGsEAv 114 (443)
T PRK08360 38 IEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLI-HYTPIYGFPVEPLLLAEKLIEIAPG--DNPKVSFGLSGSDAN 114 (443)
T ss_pred CCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhcc-CccccccCcHHHHHHHHHHHHhCCC--CCCEEEEcCCHHHHH
Confidence 3578899998885 44444 7899999999987532 2222222345666777777655432 225899999999999
Q ss_pred HHHHHHhcC-CC-CEEEEcCCCCCChHHH-HHHcCC------------EEEEecCCCCC--CCC--------CCHHHHHh
Q 014172 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEM-ARIADA------------TPVILPTRISE--NFL--------LDPKVLES 223 (429)
Q Consensus 169 ~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~-~~~~g~------------~~~~v~~~~~~--~~~--------~d~e~l~~ 223 (429)
+.+++.... .| ..|+...-+|.+.... ....|. .+..+|..... .+. .+++.+++
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (443)
T PRK08360 115 DGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKE 194 (443)
T ss_pred HHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHHH
Confidence 999887532 23 5688877777775422 222221 12223321100 000 12345555
Q ss_pred hcc-----cCCcEEEEcCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 224 KLT-----EKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 224 ~l~-----~~~~~i~l~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
.+. +++++|++...+||+|.+++ .+.+++|.++|++| |+++|+||+|.++.+.|.. .....+. ..+. +
T Consensus 195 ~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~gr~G~~-~a~~~~~-~~pD---i 268 (443)
T PRK08360 195 KFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEH-GILLVVDEVQSGLGRTGKW-FAIEHFG-VEPD---I 268 (443)
T ss_pred HHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCccc-hhhhhcC-CCCC---E
Confidence 553 45777777655799999887 55799999999999 9999999999987665532 1211121 1122 3
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.+|||.++ +|+|+||+++++++++.+.......+.+.+.+.+.++.++|+. .++ +++.+..+++-+++.+.|++
T Consensus 269 itlsK~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~---l~~--~~l~~~~~~~g~~l~~~L~~ 342 (443)
T PRK08360 269 ITLGKPLG-GGLPISATIGRAEIMDSLPPLAHAFTLSGNPVASAAALAVIEE---IEE--KNLLKRAEKLGNYTKKRLEE 342 (443)
T ss_pred EEeccccc-CCceeEEEEEcHHHHhhhcCCCCCCCCCcCHHHHHHHHHHHHH---HHH--cCHHHHHHHHHHHHHHHHHH
Confidence 36899999 9999999999999998887554555667788889999888875 111 12333334444444444433
Q ss_pred ----CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 ----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 ----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+-+..+++.|-+ +-+.+....... . ........++.+|+++ ||.+
T Consensus 343 l~~~~~~v~~vrg~Gl~-~gie~~~~~~~~-~--~~~~~~~~~~~~l~~~-Gi~~ 392 (443)
T PRK08360 343 MKKKHELIGDVRGIGLM-IGVDLVKDRETK-E--RAYEEAAKVVWRAWEL-GLIV 392 (443)
T ss_pred HHHhCCCeeeeeccceE-EEEEEecCCccc-C--ccHHHHHHHHHHHHHC-CeEE
Confidence 3334444555544 444442100000 0 0001235678887766 8875
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.5e-18 Score=169.17 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEecC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPT 208 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~ 208 (429)
-..+|++.+|++.+ .+..++|+++++++.+++.+++++||+|+++...|.+....+ ...|+++++++.
T Consensus 65 ~~~~le~~lA~l~g--------~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~ 136 (433)
T PRK08134 65 TVAVLEERVAALEG--------GVGAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKP 136 (433)
T ss_pred HHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECC
Confidence 35678888887753 234788999999999999999999999999999998765443 458999999986
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
+ |++++++++++++|+|++.+|+||+|.+.+ +++|+++|++| ++++|+|.++..... ..++ .
T Consensus 137 ~-------d~~~l~~~i~~~TklV~~e~~~np~g~v~D---i~~I~~la~~~-gi~livD~t~a~~~~----~~pl-~-- 198 (433)
T PRK08134 137 G-------DIDGWRAAIRPNTRLLFGETLGNPGLEVLD---IPTVAAIAHEA-GVPLLVDSTFTTPYL----LRPF-E-- 198 (433)
T ss_pred C-------CHHHHHHhcCCCCeEEEEECCCcccCcccC---HHHHHHHHHHc-CCEEEEECCCccccc----CCch-h--
Confidence 2 799999999999999999999999999999 99999999999 999999999864211 1121 1
Q ss_pred CCCCceEEEeccChhcccccceeeEEEc
Q 014172 289 GMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
.+..+++.|.+|.++-+|-.+|.++.
T Consensus 199 --~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 199 --HGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred --cCCCEEEeccccccCCCCCceEEEEE
Confidence 35569999999999877776777654
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=162.95 Aligned_cols=215 Identities=12% Similarity=0.121 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~ 209 (429)
...|.+.+|+.- ..+..+++++++.++..++.+++++||+|+++...|.+.... ++..|+++..++.
T Consensus 64 ~~~le~~la~LE--------g~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~vd~- 134 (395)
T PRK08114 64 HFSLQEAMCELE--------GGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWFDP- 134 (395)
T ss_pred HHHHHHHHHHHh--------CCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEECC-
Confidence 456666666642 245788888899999999999999999999999888776654 4567999999874
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhC-CCeEEEEccCCcccccCCCCCCccccCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~-~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
.|.+.+++++++++|+|++.+|.||+|.+.+ +++|+++|+++ +++++++|.++.-... ....
T Consensus 135 ------~d~~~l~~~l~~~TrlV~~EtpsNp~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~-----~~pl--- 197 (395)
T PRK08114 135 ------LIGADIAKLIQPNTKVVFLESPGSITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL-----FKAL--- 197 (395)
T ss_pred ------CCHHHHHHhcCCCceEEEEECCCCCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc-----cCHH---
Confidence 3789999999999999999999999999999 99999999998 1499999999974211 1111
Q ss_pred CCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
..+..+++.|.+|.++-+| .-.|.++.++++.+.+.......+.+.+++....+..-| +-+.-+.++..++
T Consensus 198 -~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl-------~TL~lR~~~~~~n 269 (395)
T PRK08114 198 -DFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGL-------RTLGVRLRQHEES 269 (395)
T ss_pred -HcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCC-------CcHHHHHHHHHHH
Confidence 2456699999999886454 677877888877776765555556566666654443333 3356677778888
Q ss_pred HHHHHHHhccCCCce
Q 014172 368 RDFLVKSFGELEGVK 382 (429)
Q Consensus 368 r~~l~~~L~~l~g~~ 382 (429)
...+.+.|++.|.++
T Consensus 270 a~~va~~L~~hp~V~ 284 (395)
T PRK08114 270 SLKVAEWLAEHPEVA 284 (395)
T ss_pred HHHHHHHHHcCCCEe
Confidence 888999999877654
|
|
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-18 Score=162.45 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=163.9
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC----CCC-CCC--CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG----FTR-YTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~----~~~-Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
..|.+.+.|+.+.-. +.++.|++++.+.+... +.. |+. ..+..+.|+.+|++++ .++.+|++|+|+
T Consensus 39 ~~~~~~vyld~~at~-p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklIn------Ad~~dIiFts~A 111 (428)
T KOG1549|consen 39 HHGTRPVYLDNQATG-PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLIN------ADPSDIVFTSGA 111 (428)
T ss_pred cCCCccEEEecCcCC-CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhC------CCCCcEEEeCCc
Confidence 355678888877744 34788888888876542 222 332 2236788999999986 578789999999
Q ss_pred HHHHHHHHHHhc-CCCC----EEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 165 KQSILQAVLAVC-SPGD----EVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 165 ~~al~~~l~~l~-~~gd----~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
|++++++++.+. ..+| .|++..-.|+.....+ +..|++++++|+. +++.+|.+.+++.++++|+++.|.+
T Consensus 112 TEs~Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~--~~~~~d~~~~~~~i~~~T~lv~I~~ 189 (428)
T KOG1549|consen 112 TESNNLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVE--DSGLVDISKLREAIRSKTRLVSIMH 189 (428)
T ss_pred hHHHHHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccC--ccccccHHHHHHhcCCCceEEEEEe
Confidence 999999999984 3566 8999888888876554 4569999999997 4456899999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
.+|.+|+++| +++|+++|+++ ++.+++|.+++- |..+..+..+ +..+...|.+|+||.+| +|++++
T Consensus 190 Vnn~~gv~~P---v~EI~~icr~~-~v~v~~DaAQav----G~i~vDV~el----n~D~~s~s~HK~ygp~~--iGaLYv 255 (428)
T KOG1549|consen 190 VNNEIGVLQP---VKEIVKICREE-GVQVHVDAAQAV----GKIPVDVQEL----NADFLSISAHKIYGPPG--IGALYV 255 (428)
T ss_pred cccCcccccc---HHHHHHHhCcC-CcEEEeehhhhc----CCccccHHHc----CchheeeecccccCCCc--ceEEEE
Confidence 9999999999 99999999999 999999999986 5555555555 33478889999999888 899988
Q ss_pred CH
Q 014172 317 PK 318 (429)
Q Consensus 317 ~~ 318 (429)
.+
T Consensus 256 r~ 257 (428)
T KOG1549|consen 256 RR 257 (428)
T ss_pred cc
Confidence 75
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.2e-17 Score=155.64 Aligned_cols=287 Identities=19% Similarity=0.215 Sum_probs=213.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC
Q 014172 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~ 186 (429)
.+.++.+++++.+... .+.++ -..++.+.+.+.+...++.. +.+-++++.+++.+++.++..+++|||+||+..
T Consensus 14 ~~v~~~V~~am~~~~~---~h~s~--~F~~~~~~~~~~L~~v~~t~-~~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~ 87 (383)
T COG0075 14 VPVPPRVLLAMARPMV---GHRSP--DFVGIMKEVLEKLRKVFGTE-NGDVVLLSGSGTLAMEAAVASLVEPGDKVLVVV 87 (383)
T ss_pred CCCCHHHHHHhcCCCC---CCCCH--HHHHHHHHHHHHHHHHhcCC-CCcEEEEcCCcHHHHHHHHHhccCCCCeEEEEe
Confidence 4457888888776432 23433 34566667777777777743 235567778899999999999999999999999
Q ss_pred CCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc--cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC
Q 014172 187 PFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (429)
Q Consensus 187 p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~--~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~ 262 (429)
....+. .++++.+|++++.+... .+..+|+++++++++ ++.++|.+++.--+||+..| +++|+++|++| +
T Consensus 88 nG~FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnp---l~~I~~~~k~~-g 161 (383)
T COG0075 88 NGKFGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNP---LKEIAKAAKEH-G 161 (383)
T ss_pred CChHHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCc---HHHHHHHHHHc-C
Confidence 877764 47999999999999875 345689999999998 35778888888889999999 99999999999 9
Q ss_pred eEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh--------------
Q 014172 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------- 328 (429)
Q Consensus 263 i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~-------------- 328 (429)
.++|+|.+-+. ++ ....+ +.|+.++++.+--|.++. -..+|++..+++..+.+....
T Consensus 162 ~l~iVDaVsS~---Gg-~~~~v----d~wgiDv~itgSQK~l~~-PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~ 232 (383)
T COG0075 162 ALLIVDAVSSL---GG-EPLKV----DEWGIDVAITGSQKALGA-PPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKY 232 (383)
T ss_pred CEEEEEecccC---CC-cccch----hhcCccEEEecCchhccC-CCccceeEECHHHHHHHhcCCCCceeecHHHHHHH
Confidence 99999998764 22 22222 236777999999999973 344899998887766654221
Q ss_pred ----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC---ceEEEEEecCCccC
Q 014172 329 ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAFYLFIDFSTYYG 401 (429)
Q Consensus 329 ----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~---~~~~~~~~l~~~~~ 401 (429)
..+.++++....++...+|+.- .++.+++..++++++.+.++++++.+ |++..... ..--..+.+|..
T Consensus 233 ~~~~~~~p~Tppv~~i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g-- 307 (383)
T COG0075 233 MEKKGSTPYTPPVNLIYALREALDLI--LEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEG-- 307 (383)
T ss_pred HhhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCC--
Confidence 2344556777777778888752 25668999999999999999999999 88876511 222244666653
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++...+++++||.+
T Consensus 308 ---------~~~~~~~~~~~~~~g~~i 325 (383)
T COG0075 308 ---------VDDKKVRRALLKEYGVEI 325 (383)
T ss_pred ---------CCcHHHHHHHHHhCCEEe
Confidence 244455558899989876
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=165.12 Aligned_cols=215 Identities=10% Similarity=0.078 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~ 209 (429)
...|++.++++. | .+..+++++|+.++..++.+++++||+|+++...|.+... .+...|++++.++ +
T Consensus 71 ~~~Le~~lA~l~----g----~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d 141 (436)
T PRK07812 71 QDVVEQRIAALE----G----GVAALLLASGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-D 141 (436)
T ss_pred HHHHHHHHHHHh----C----CCeEEEEccHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-C
Confidence 456777777664 3 2457888888889999999999999999999988877553 3345788888885 2
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
. .|++.+++++++++++|++.+|+||+|.+.+ +++|.++|++| |+++|+|+++..... ..++
T Consensus 142 ~-----~d~e~l~~ai~~~tklV~ie~~sNp~G~v~D---l~~I~~la~~~-gi~liVD~t~a~~~~----~~pl----- 203 (436)
T PRK07812 142 P-----DDLDAWRAAVRPNTKAFFAETISNPQIDVLD---IPGVAEVAHEA-GVPLIVDNTIATPYL----IRPL----- 203 (436)
T ss_pred C-----CCHHHHHHhCCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCccccc----CCch-----
Confidence 1 2899999999999999999999999999999 99999999999 999999999864211 1111
Q ss_pred CCCceEEEeccChhcccccceeeEEEcCHH-------------------------------HHHHHH-HHhhcccCCCch
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKH-------------------------------FVAACN-KIQSQFTSGASS 337 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-------------------------------~~~~l~-~~~~~~~~~~~~ 337 (429)
..+..+++.|++|.+|-.|--+|+++.... ++..+. ......+.+.+.
T Consensus 204 ~~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p 283 (436)
T PRK07812 204 EHGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISP 283 (436)
T ss_pred hcCCCEEEEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCH
Confidence 134558899999999877766777665311 010111 222334444555
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 338 ~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
+....+..- -+-+..+.++..++...+.+.|++.|+++
T Consensus 284 ~~a~l~~rg-------l~tL~~R~~~~~~nA~~la~~L~~~p~v~ 321 (436)
T PRK07812 284 FNAFLIAQG-------LETLSLRIERHVANAQRVAEFLEARDEVA 321 (436)
T ss_pred HHHHHHhcC-------cCcHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 543333222 23366677777888888999999887764
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-17 Score=162.93 Aligned_cols=306 Identities=15% Similarity=0.095 Sum_probs=202.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCC------CC-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF------TR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~------~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
++.|+|-..++.. ++.+.+++...+.+.+ .+ |+......++.....++..+.||.. .-+|-.-+|+. +
T Consensus 49 ~~~l~LiasEN~~--s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~--~anvqp~Sg~~-A 123 (493)
T PRK13580 49 RSSLKLIASENYS--SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAE--HAYVQPHSGAD-A 123 (493)
T ss_pred hcCceEecccccC--CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCC--cccccCCCcHH-H
Confidence 4579998888773 5667777666554321 12 3333445667777778888888843 34665555555 5
Q ss_pred HHHHHHHhcCC-------------------------------CCEEEEcCCCCCChHHH---HHHcC--CEEEEecCCCC
Q 014172 168 ILQAVLAVCSP-------------------------------GDEVIIPAPFWVSYPEM---ARIAD--ATPVILPTRIS 211 (429)
Q Consensus 168 l~~~l~~l~~~-------------------------------gd~Vlv~~p~y~~~~~~---~~~~g--~~~~~v~~~~~ 211 (429)
...++.++++| ||+|+..++...++... ....| .+++.++++.+
T Consensus 124 n~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~ 203 (493)
T PRK13580 124 NLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPD 203 (493)
T ss_pred HHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCcc
Confidence 56688888876 89999887766544221 12222 56666777643
Q ss_pred CCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
+..+|++++++.++++++.|++++.+|- |...| +++|.++|+++ |+++++|++|....+++..... ......
T Consensus 204 -~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~d---l~~i~eia~~~-gA~L~VD~AH~~Gligg~~~~~--~~~~~~ 275 (493)
T PRK13580 204 -TGLLDYDEIAALAREFKPLILVAGYSAY-PRRVN---FAKLREIADEV-GAVLMVDMAHFAGLVAGKVFTG--DEDPVP 275 (493)
T ss_pred -cCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcC---HHHHHHHHHHc-CCEEEEECchhhceeccccchh--hcCCCC
Confidence 3569999999999999899999888886 55778 99999999999 9999999999976665432210 010112
Q ss_pred CceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l 371 (429)
+..|+++|++|++ .|.+.|++++++++++.+........+++..+...++..++..- ........++++.++.+.|
T Consensus 276 ~~D~vtgT~hKaL--~GP~GG~I~~~~~l~~~L~~a~P~i~gg~l~p~iAA~avAl~e~--~~~ef~~y~~~l~~Na~~L 351 (493)
T PRK13580 276 HADIVTTTTHKTL--RGPRGGLVLAKKEYADAVDKGCPLVLGGPLPHVMAAKAVALAEA--RTPEFQKYAQQVVDNARAL 351 (493)
T ss_pred CCcEEEeCChhhc--cCCCeEEEEecHHHHHHHhhCCCcccCCCccHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHH
Confidence 4558999999998 34556999999999888865443333344444444444444431 1122356788889999999
Q ss_pred HHHhccCCCceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 372 VKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 372 ~~~L~~l~g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.+.|.+. |+.+.. ...+..+++++.+. ......+.+.|++.||.|+
T Consensus 352 a~~L~~~-G~~vv~ggTdshIV~V~lg~~-----------~~~g~~a~~~L~e~GI~vn 398 (493)
T PRK13580 352 AEGFLKR-GARLVTGGTDNHLVLIDVTSF-----------GLTGRQAESALLDAGIVTN 398 (493)
T ss_pred HHHHHhc-CCCccCCCCCCCEEEEEeCCH-----------HHHHHHHHHHHHHCCeEEc
Confidence 9999988 887752 22345578888643 1133345545556699874
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-18 Score=147.73 Aligned_cols=165 Identities=23% Similarity=0.224 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH-HHHHHcCCEEEEecCCCCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTRISEN 213 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~~~~ 213 (429)
.++++.++++++ .+.+++++++|+++++.+++++++++|++|+++++.|.+.. ..++..|++++.++.+..+.
T Consensus 3 ~~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~ 76 (170)
T cd01494 3 EELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGY 76 (170)
T ss_pred HHHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCc
Confidence 577888888863 35678999999999999999999988999999999999988 88899999999999865443
Q ss_pred CCCCHHHHHhhc-ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 214 FLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 214 ~~~d~e~l~~~l-~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
...+.+.+++.. .++++++++++++||+|..++ .++|.++|+++ |+++|+|++|..+...... .... ..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~---~~~l~~~~~~~-~~~li~D~a~~~~~~~~~~----~~~~-~~~ 147 (170)
T cd01494 77 GGLDVAILEELKAKPNVALIVITPNTTSGGVLVP---LKEIRKIAKEY-GILLLVDAASAGGASPAPG----VLIP-EGG 147 (170)
T ss_pred cchhhhhhhhccccCceEEEEEecCcCCCCeEcC---HHHHHHHHHHc-CCEEEEecccccccccccc----cccc-ccc
Confidence 333334554443 467899999999999999999 68899999999 9999999999986654311 1111 134
Q ss_pred ceEEEeccChhcccccceeeEEEc
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
.++++.|++|.++. .++||+++
T Consensus 148 ~d~~~~s~~K~~~~--~~~G~l~~ 169 (170)
T cd01494 148 ADVVTFSLHKNLGG--EGGGVVIV 169 (170)
T ss_pred CCEEEEEcccccCC--CceEEEEe
Confidence 66899999999973 78999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=154.78 Aligned_cols=332 Identities=15% Similarity=0.209 Sum_probs=224.3
Q ss_pred cccccccCcccccccCCchhHHHHHHHHHHHh----------cCCCeEEcCCCC--CCCCChHHHHHHHHHHHHcCCCC-
Q 014172 61 EVQVDVSLSPRVNAVKPSKTVAITDQATALAQ----------AGVSVIRLAAGE--PDFDTPVLIAEAGINAIREGFTR- 127 (429)
Q Consensus 61 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~i~L~~g~--~~~~~p~~v~~a~~~~~~~~~~~- 127 (429)
.+.+|..+.+.+.+-+....++.+...+++.. .-.+.+..+..+ .....+|++++++.+.+++.-.+
T Consensus 126 ~F~Yd~ff~~~i~kKk~DhsYRvFk~vNRlA~~fP~A~~~se~t~k~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GA 205 (570)
T KOG1360|consen 126 TFDYDRFFREEIDKKKRDHSYRVFKNVNRLAKEFPLAHRYSEATEKKVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGA 205 (570)
T ss_pred cccHHHHHHHHHHhhhccchhHHHHHHhHhhhhccchhhccccccCceEEEecCccccccCChHHHHHHHHHHHHcCCCc
Confidence 34466666666666555544444433333222 111334444333 34455899999999998752111
Q ss_pred ------CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCC
Q 014172 128 ------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 201 (429)
Q Consensus 128 ------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~ 201 (429)
-+.+.-..+|.+.+|++.++...+ --..+++.+-++ ++.+.+. -||-+|....-.+.+..+.++..++
T Consensus 206 GGTRNIsG~s~~hv~LE~eLA~LHqK~aAL--lFsSCfVANDst--LftLak~--lpgcei~SD~gNHASMI~GIrns~v 279 (570)
T KOG1360|consen 206 GGTRNISGHSKHHVRLEAELADLHQKEAAL--LFSSCFVANDST--LFTLAKK--LPGCEIFSDEGNHASMIQGIRNSRV 279 (570)
T ss_pred CCccccCCCCchhhhHHHHHHHHhcCccee--eeeeeeeccchH--HHHHHHH--CCCcEEeccccchHHHHHHhhhcCC
Confidence 112233467888888887532111 011333444443 3322232 3888999888889899999999998
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhccc----CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~ 277 (429)
.-..+.. | |++.|++++.. .+|.|-+.+.+..+|.+.| +++|++++++| |.+-+.||++.-..|+
T Consensus 280 ~K~IFrH----N---D~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp---leelcDvah~y-GAiTFlDEVHAVGlYG 348 (570)
T KOG1360|consen 280 PKHIFRH----N---DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP---LEELCDVAHKY-GAITFLDEVHAVGLYG 348 (570)
T ss_pred cceeecc----C---CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC---HHHHHHHHHHh-Cceeeeehhhhhcccc
Confidence 7766664 2 88888888753 5788889999999999999 99999999999 9999999999988888
Q ss_pred CCCCCccccCCC-CCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccC--CCchHHHHHHHHHHhcCCCCh
Q 014172 278 PATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS--GASSISQKAGVAALGLGYAGG 354 (429)
Q Consensus 278 ~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~--~~~~~~q~aa~~~l~~~~~~~ 354 (429)
+.+.. +.+-++ +....|+.+++.|+||.-| ||+.+..++++.++.+...+.+ +.++.....+..+.+... .
T Consensus 349 ~rGaG-vgerdGvm~kvDiIsGTLgKafGcVG---GYIAat~~LvDmiRSyAaGFIFTTSLPP~vl~GAleaVr~lk--~ 422 (570)
T KOG1360|consen 349 PRGAG-VGERDGVMHKVDIISGTLGKAFGCVG---GYIAATRKLVDMIRSYAAGFIFTTSLPPMVLAGALEAVRILK--S 422 (570)
T ss_pred CCCCC-ccccCCcchhhhhcccchhhhccccc---ceehhhhhHHHHHHHhcCceEEecCCChHHHHhHHHHHHHHh--h
Confidence 65432 222222 3445689999999999777 9999999999999988655544 345555555665555311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.-..++...+++..++.+.|.++ |+.+.+..+ ..+-+.+.+. .-+.+.++.|+.++||+|
T Consensus 423 ~eg~~lR~~hqrnv~~~kq~l~~~-GiPVi~~pS-HIiPv~vgda-----------~l~~~~sd~Li~~h~iYv 483 (570)
T KOG1360|consen 423 EEGRVLRRQHQRNVKYVKQLLMEL-GIPVIPNPS-HIIPVRVGDA-----------ALAKQASDILISKHNIYV 483 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHc-CCcccCCCc-ceeeeeccCH-----------HHHHHHHHHHHHhcCeEE
Confidence 222456777788889999999998 888874444 4477777543 246789999999999986
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=161.64 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=190.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCC-CCCCC---CCC---HHHHHHHHHHHHhhcCCCCCCCcEEEe---cCh
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPN---AGT---LELRSAICHKLKEENGLSYTPDQILVS---NGA 164 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~-~Y~~~---~G~---~~lr~~ia~~l~~~~g~~~~~~~i~~t---~G~ 164 (429)
++.|+|-..++. .++.+++++...+.+.+. .++.. .|. ..+.+...+...+.+| .+++++.++ +|+
T Consensus 34 ~~~l~l~~sen~--~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~--a~~~~~~~~~~~~sg 109 (452)
T PTZ00094 34 IEGLELIASENF--TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFG--LDPEEWGVNVQPYSG 109 (452)
T ss_pred HcCeeEeccccc--CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhC--CCcccceeecCCCch
Confidence 457999999887 457788888887754321 12111 121 2222222334444556 355667666 788
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH----------cCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEE
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----------ADATPVILPTRISENFLLDPKVLESKLTE-KSRLLI 233 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~----------~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~ 233 (429)
++++..++.+++++||.|++....|.++...... .+.+++.++++. ++.+|++++++.++. ++++++
T Consensus 110 t~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~--~g~id~~~L~~~l~~~~~~lvi 187 (452)
T PTZ00094 110 SPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNE--KGLIDYDKLEELAKAFRPKLII 187 (452)
T ss_pred HHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCC--CCCcCHHHHHHHHHHhCCCEEE
Confidence 8999998999999999999988777766543211 113344555543 356899999999954 677766
Q ss_pred EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 234 l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
+. ++.+|...| +++|.++|+++ |+++++|+++..........+ .+. .+..+++.|++|++ .|.+.|+
T Consensus 188 ~~--~s~~g~~~d---i~~I~~i~~~~-ga~l~vDaaq~~G~i~~~~~~----~~~-~~~D~l~~S~hK~l--~GP~Gg~ 254 (452)
T PTZ00094 188 AG--ASAYPRDID---YKRFREICDSV-GAYLMADIAHTSGLVAAGVLP----SPF-PYADVVTTTTHKSL--RGPRSGL 254 (452)
T ss_pred Ee--CCCCCCccC---HHHHHHHHHHc-CCEEEEeccchhccccCCCCC----CCC-CCCcEEEcCCccCC--CCCCceE
Confidence 53 345999999 88999999999 999999999987544322111 111 14558999999987 3444588
Q ss_pred EEcCHHHHHHHHHHh-----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc
Q 014172 314 IAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388 (429)
Q Consensus 314 v~~~~~~~~~l~~~~-----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~ 388 (429)
+++++++.+.+.... ..+..+++.....++.++++.- .....+...++..++++++.+.|.+. |+++..+..
T Consensus 255 l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~--~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~ 331 (452)
T PTZ00094 255 IFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEV--QSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGT 331 (452)
T ss_pred EEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCC
Confidence 887766544333221 1112234555555555666541 12345677888899999999999886 887764221
Q ss_pred -eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 389 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 389 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.....+.+... + .+..++...| ++.||.++
T Consensus 332 ~~~~~~v~~~~~-~---------~~~~~~~~~L-~~~gI~vs 362 (452)
T PTZ00094 332 DNHLVLVDLRPF-G---------ITGSKMEKLL-DAVNISVN 362 (452)
T ss_pred CCceEeecCCcC-C---------CCHHHHHHHH-HHCCcEEe
Confidence 22244444321 0 2455566555 77799873
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=153.71 Aligned_cols=265 Identities=19% Similarity=0.218 Sum_probs=180.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC
Q 014172 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~ 186 (429)
-.+.+++.+++.++-..+...|+.++ ..+++.+++++.+| ...+++++++|++..+++.+.++||+.|++..
T Consensus 10 ~g~~~~m~eam~~a~~~~~~~YG~D~----~~~~~e~~~ae~~g----~~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~ 81 (342)
T COG2008 10 AGPTPEMREALAAANAVGDDVYGEDP----TTNALEQRIAELFG----KEAALFVPSGTQANQLALAAHCQPGESVICHE 81 (342)
T ss_pred CCCCHHHHHHHHhccccCCCCCCCCH----HHHHHHHHHHHHhC----CceEEEecCccHHHHHHHHHhcCCCCeEEEec
Confidence 34578999999887433455676554 45555555554444 27899999999999999999999999999999
Q ss_pred CCCCChHH--HHHHcC-CEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCCCHHHHHHHHHHH
Q 014172 187 PFWVSYPE--MARIAD-ATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIV 257 (429)
Q Consensus 187 p~y~~~~~--~~~~~g-~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a 257 (429)
-+|....+ ..+.++ +.. ++..+..+..+++|+|+..+.+ .+.++++.+.+|-.|+++|.+++++|.++|
T Consensus 82 ~aHi~~~E~Ga~~~~~~~~~--~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l~el~~i~~~~ 159 (342)
T COG2008 82 TAHIYTDECGAPEFFGGGQK--LPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPLDELEAISAVC 159 (342)
T ss_pred cccceecccCcHHHHcCCce--eccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCHHHHHHHHHHH
Confidence 88765443 233332 332 3333345567999999997763 345566555555789999999999999999
Q ss_pred HhCCCeEEEEccC--CcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEE-EcCHHHHHHHHHHhhcccCC
Q 014172 258 AKHPRLLVLSDEI--YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI-AGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 258 ~~~~~i~vi~Dea--y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v-~~~~~~~~~l~~~~~~~~~~ 334 (429)
++| ++.+..|.+ |..++..+ ++...+.. ..+++..++||..+.++ |.+ +++.++++.+..++......
T Consensus 160 k~~-~l~LHmDGAR~~nA~valg---~~~~~~~~--~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~~rK~~Ggl 230 (342)
T COG2008 160 KEH-GLPLHMDGARLANALVALG---VALKTIKS--YVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARRWRKRAGGL 230 (342)
T ss_pred HHh-CCceeechHHHHHHHHHcC---CCHHHHHh--hCCEEEEecccCCccee---eeEEEcCHHHHHHHHHHHHHhccc
Confidence 999 999999988 33333333 23333322 33367778999987555 665 57999999998887666554
Q ss_pred CchHHHHH--HHHHHhcCCCChHHHHHHHHHHHHH--HHHHHHHhccCCCceeecC-CceEEEEEecCC
Q 014172 335 ASSISQKA--GVAALGLGYAGGEVVSKMVKAFRER--RDFLVKSFGELEGVKMSEP-QGAFYLFIDFST 398 (429)
Q Consensus 335 ~~~~~q~a--a~~~l~~~~~~~~~~~~~~~~~~~~--r~~l~~~L~~l~g~~~~~p-~~~~~~~~~l~~ 398 (429)
.+.....+ ...+|++ .-|+ . .....+ ...|.+.|.+.+|+++..| +.++ +|++++.
T Consensus 231 ~~k~r~laA~~~~~l~~----~~~~--~-~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~-vf~~l~~ 291 (342)
T COG2008 231 MRKARFLAAQGLYALED----DVWR--L-AADHANAMAARLAEGLEAKPGVKLAFPVETNM-VFVRLPE 291 (342)
T ss_pred HhhhhHHHHHHHHHHhc----cHHH--H-HHHHHHHHHHHHHHhhhhcCCceeccCCcccE-EEEECCh
Confidence 44433333 3344443 2222 2 222334 7778889987789998765 5555 8999985
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-16 Score=159.21 Aligned_cols=315 Identities=13% Similarity=0.122 Sum_probs=192.9
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|.. .++- +|.+.+++.+.+.+..+ +.......+....+++.+.+..+.. ..+.+++++++++++
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~SGseA~ 114 (425)
T PRK07495 37 KEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH-TCHQVVPYENYVRLAERLNALVPGD-FAKKTIFVTTGAEAV 114 (425)
T ss_pred CCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccC-cccCccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHH
Confidence 35788999988863 3343 78899999998875321 1111122345555666666543311 125899999999999
Q ss_pred HHHHHHhcC-C-CCEEEEcCCCCCChHHHHHH-cCC-------------EEEEecCCCCCCCCCC----HHHHHhhcc--
Q 014172 169 LQAVLAVCS-P-GDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISENFLLD----PKVLESKLT-- 226 (429)
Q Consensus 169 ~~~l~~l~~-~-gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~~~~d----~e~l~~~l~-- 226 (429)
..+++.... . ...|+...-+|.+....... .|. .++.+|.+... ...+ ++.+++.+.
T Consensus 115 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~l~~~~~~~ 193 (425)
T PRK07495 115 ENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVEL-HGVSVEQSLAALDKLFKAD 193 (425)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCccc-ccccHHHHHHHHHHHHHhc
Confidence 998886532 2 36788888888876433222 111 22334432211 1122 445566653
Q ss_pred ---cCCcEEEEcCC-CCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccC
Q 014172 227 ---EKSRLLILCSP-SNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (429)
Q Consensus 227 ---~~~~~i~l~~p-~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (429)
.+..+|++... +| +| .++|.+.+++|.++|++| |+++|+||+|.++.+.|.. ..+.. .+.+..+.+||
T Consensus 194 ~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~tG~gr~G~~-~a~~~----~gv~pDi~tls 266 (425)
T PRK07495 194 VDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQH-GILLIADEVQTGFARTGKL-FAMEH----HEVAADLTTMA 266 (425)
T ss_pred cCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHc-CCEEEEechhhcCCcCCCc-eeecc----cCCCCCEEeeh
Confidence 24566666333 45 78 557999999999999999 9999999999987554431 11111 23445588999
Q ss_pred hhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----
Q 014172 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE---- 377 (429)
Q Consensus 302 K~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~---- 377 (429)
|.++ +|+++||+++++++++.+.......+++.++++++++.++++. .++ .++.+..+++.+++.+.|++
T Consensus 267 K~l~-~G~pigav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~---l~~--~~l~~~~~~~g~~l~~~L~~l~~~ 340 (425)
T PRK07495 267 KGLA-GGFPLAAVTGRAEIMDAPGPGGLGGTYGGNPLGIAAAHAVLDV---IEE--EDLCERANQLGNRLKQRLASLRET 340 (425)
T ss_pred hhhc-CCccceEEEEcHHHHhccCCCCcCCCCCCCHHHHHHHHHHHHH---HHh--chHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999 8999999999999988876544456677899999988777764 111 12333444444444444443
Q ss_pred CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|.+.-+... |+++|+.+...... . ........+.+.++++ ||.+
T Consensus 341 ~~~i~~vrG~-Gl~~~iel~~~~~~--~--~~~~~~~~~~~~~~~~-Gvl~ 385 (425)
T PRK07495 341 VPEIADIRGP-GFMNAVEFNDADSG--L--PSAEFANRVRLKALEK-GLIL 385 (425)
T ss_pred CCCeeeeecC-ceEEEEEEecCCCC--C--ccHHHHHHHHHHHHHC-CeEE
Confidence 3433323333 67799988431000 0 0000134567666665 8765
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=158.79 Aligned_cols=300 Identities=12% Similarity=0.090 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEE--EecChHHHHHHHHHHhcC--------CC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL--VSNGAKQSILQAVLAVCS--------PG 179 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~--~t~G~~~al~~~l~~l~~--------~g 179 (429)
.+++.+.+...+.....++.......++.+.+.+++.+.+|.+-..+++. +|+|+|+++..++.+... .|
T Consensus 54 ~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g 133 (431)
T TIGR01788 54 EPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAG 133 (431)
T ss_pred CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46688888888865444444444456888888888888888531113454 489999999988866431 12
Q ss_pred -----CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 180 -----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 180 -----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
-.|+++.-.|.+....++..|++++.+|+++ +++.+|++.|++++++++.+|+++..+|.||.+.| +++|+
T Consensus 134 ~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t~lV~~t~g~t~tG~idp---i~~I~ 209 (431)
T TIGR01788 134 KPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDENTIGVVCILGTTYTGEYED---VKALN 209 (431)
T ss_pred CCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhhCCeEEEEEeCCCCCcccCC---HHHHH
Confidence 3699999999999999999999999999975 34579999999999999999999999999999999 89999
Q ss_pred HHHHhCC-----CeEEEEccCCccccc---CCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHH--HHHH
Q 014172 255 RIVAKHP-----RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKH--FVAA 323 (429)
Q Consensus 255 ~~a~~~~-----~i~vi~Deay~~~~~---~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~--~~~~ 323 (429)
++|++++ ++++++|.+|+.+.. .+.....+. ..+...+..|.+|.+ +..| +|+++..+. +.+.
T Consensus 210 ~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~----~~~~DSis~s~HK~~~~P~g--~G~l~~r~~~~l~~~ 283 (431)
T TIGR01788 210 DALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR----LPRVKSINVSGHKYGLVYPG--VGWVIWRDEEALPEE 283 (431)
T ss_pred HHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC----CCCceEEEECchhccCCCCC--cEEEEEeChHHcchh
Confidence 9999873 699999999995431 122222221 124446788899976 5444 788876543 2232
Q ss_pred HHH---Hhh----cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC--CceEEEEE
Q 014172 324 CNK---IQS----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFYLFI 394 (429)
Q Consensus 324 l~~---~~~----~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p--~~~~~~~~ 394 (429)
+.. +.. ..+...+...-.++..++.....+.+.++++.++..++.+++.+.|++++++++..| ..+. +.+
T Consensus 284 ~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~i-V~F 362 (431)
T TIGR01788 284 LIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPL-VAF 362 (431)
T ss_pred heecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceE-EEE
Confidence 211 000 011111222211222222211123567888888889999999999999988988754 5555 445
Q ss_pred ecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++... + ....+..++.++|.++ |+.+
T Consensus 363 r~~~~-~------~~~~~~~~l~~~L~~~-G~~~ 388 (431)
T TIGR01788 363 KLKDD-A------DPGYTLYDLSHRLRER-GWIV 388 (431)
T ss_pred EeCCC-C------CCCcCHHHHHHHHHHC-CCcc
Confidence 65421 0 0012567888887665 7753
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=152.08 Aligned_cols=300 Identities=18% Similarity=0.218 Sum_probs=203.3
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.+|+..|||..|. +.++- +|.+.+++.+..++-++ .++.-..+.+.++++.|.+..+ ..+.|+++|+++|++
T Consensus 39 ~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h--~sn~~~~~~~~~la~~L~~~s~---~~d~vff~NSGaEA~ 113 (404)
T COG4992 39 QQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH--VSNLFYNEPQAELAEKLVELSP---FADRVFFCNSGAEAN 113 (404)
T ss_pred CCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh--cccccCChHHHHHHHHHHhhCc---cccEEEEcCCcHHHH
Confidence 4788999999887 44544 79999999987765211 1111224566667777765432 368999999999999
Q ss_pred HHHHHHhcC----CC-CEEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCCCCHHHHHhhcccCCc
Q 014172 169 LQAVLAVCS----PG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLTEKSR 230 (429)
Q Consensus 169 ~~~l~~l~~----~g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~l~~~l~~~~~ 230 (429)
+.++....+ ++ .+|+....+|++-...+-..+.+ ++.+|. + |++.++++++++|.
T Consensus 114 EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf------n-Di~al~~ai~~~ta 186 (404)
T COG4992 114 EAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF------N-DIEALEAAIDEDTA 186 (404)
T ss_pred HHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC------C-CHHHHHHHhccCeE
Confidence 999887532 22 37888888887644333333322 223332 2 89999999999999
Q ss_pred EEEEcCCCCCccCCCCH-HHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccc
Q 014172 231 LLILCSPSNPTGSVYPK-NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (429)
Q Consensus 231 ~i~l~~p~NPtG~~~~~-~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 309 (429)
+|++..-+--.|...+. +.++++.++|++| |+++|.||++.++-..|.-. ..... +..--+.++.|.+| .|.
T Consensus 187 AvivEPIQGEgGV~~~~~~fl~~lr~lCd~~-g~LLI~DEVQtG~GRTGk~f-A~e~~----gV~PDI~tlaK~Lg-GG~ 259 (404)
T COG4992 187 AVIVEPIQGEGGVIPAPPEFLKALRELCDEH-GALLILDEVQTGLGRTGKLF-AYEHY----GVEPDILTLAKALG-GGF 259 (404)
T ss_pred EEEEecccCCCCCCCCCHHHHHHHHHHHHHh-CeEEEEeccccCCCccchHH-HHHHh----CCCCCEEEeecccc-CCc
Confidence 99988888888876654 4699999999999 99999999999876555321 11111 11112667899999 999
Q ss_pred eeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCceeec
Q 014172 310 RLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMSE 385 (429)
Q Consensus 310 R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g~~~~~ 385 (429)
.+|.+++.+.+.+.+..-....+++-++++.+++.++|+.-. + +.+.+..++.-+++.++|.++ +-++-++
T Consensus 260 PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~--~---e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vR 334 (404)
T COG4992 260 PIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALAVLEVLL--E---EGLLENVREKGEYLLQRLRELKRRYPLVKEVR 334 (404)
T ss_pred cceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHHHHHHHHc--c---hhHHHHHHHHHHHHHHHHHHHhhcCCceeeee
Confidence 999999986666666655566778889999999999887521 1 234444455555666666554 2133333
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..| +.+=+.+... ....++++.|.++ ||.+
T Consensus 335 G~G-LmiGiel~~~-----------~~a~~~~~~~~~~-gvL~ 364 (404)
T COG4992 335 GRG-LMIGIELKEP-----------YRARDIVRALREE-GVLV 364 (404)
T ss_pred cce-eEEEEEecCc-----------ccHHHHHHHHHHC-CeEE
Confidence 444 4455666431 1367888888777 7775
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-16 Score=156.69 Aligned_cols=312 Identities=13% Similarity=0.090 Sum_probs=186.2
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-CCcEEE-ecChHH
Q 014172 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-PDQILV-SNGAKQ 166 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-~~~i~~-t~G~~~ 166 (429)
..|+..||+..|... ++- +|.+.+++.+.+.+..... ......+.+..+++.+.+....+.. .+.+++ ++++++
T Consensus 32 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~-~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGse 110 (412)
T TIGR02407 32 EDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIH-SLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTN 110 (412)
T ss_pred CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhcccee-ccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchH
Confidence 357889999888633 343 7999999999886421111 1112245666677776653210101 124655 589999
Q ss_pred HHHHHHHHhcC-CC-CEEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCCCC-CCCCHHHHHhhcc----
Q 014172 167 SILQAVLAVCS-PG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISEN-FLLDPKVLESKLT---- 226 (429)
Q Consensus 167 al~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~-~~~d~e~l~~~l~---- 226 (429)
++..+++.... .| .+|+....+|++....+.. .|. .++.+|...... ..-+++.+++.+.
T Consensus 111 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 190 (412)
T TIGR02407 111 AVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSS 190 (412)
T ss_pred HHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccC
Confidence 99988887642 23 6788888888876644332 221 223333321000 0014677787775
Q ss_pred --cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCC-CccccCCCCCCceEEEeccCh
Q 014172 227 --EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 227 --~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~-~~~~~~~~~~~~~i~~~S~SK 302 (429)
+++.+|++...+++.|. +.+.+.+++|.++|++| |+++|+||++.+|...|... .....+. .| +.+|+|
T Consensus 191 ~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GRtG~~~a~~~~~v~--PD----i~~~~K 263 (412)
T TIGR02407 191 GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRH-DILLIVDDIQAGCGRTGTFFSFEPAGIE--PD----IVCLSK 263 (412)
T ss_pred CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchhHHhcccCCC--CC----EEEech
Confidence 24566776666888998 67888999999999999 99999999998753333211 0111221 22 446899
Q ss_pred hcccc-cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHhccC
Q 014172 303 AFAMT-GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG---EVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 303 ~~~~~-G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~---~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
.++ + |+|+||+++++++ +.+.......+++.+.++..++.+.++.-.... +++.++.+.++++.+.+. +.+
T Consensus 264 ~lg-~~G~pigav~~~~~~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~---~~~ 338 (412)
T TIGR02407 264 SIS-GYGLPLALTLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIV---AEY 338 (412)
T ss_pred hcc-CCccceeEEEEchhh-hccCCCccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH---hhC
Confidence 998 7 9999999998876 544333334455667777666666665200011 122222223333222222 223
Q ss_pred CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 ~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.+.....|+++|+.++.. ....++...|+++ ||.+
T Consensus 339 ~~~~~~vrg~Gl~~~l~l~~~-----------~~~~~~~~~~~~~-Gv~v 376 (412)
T TIGR02407 339 PELIKQVRGRGLMQGIECGDG-----------DLAGKIAKAAFEN-GLII 376 (412)
T ss_pred CCceEeeecceeEEEEEecCh-----------HHHHHHHHHHHHC-CCEE
Confidence 333344456678899999742 1356788888766 8876
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-16 Score=150.98 Aligned_cols=249 Identities=13% Similarity=0.130 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCc--EEEecChHHHHHHHHHHh--cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~--i~~t~G~~~al~~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 209 (429)
..++.+.+.+++.+.+|. ++++ .++|+|+|+++..++... ..++++|++++-.|++....++..|.+.+.|+++
T Consensus 63 ~~~~e~~~~~~~a~l~g~--~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~ 140 (380)
T PRK02769 63 SFDFERDVMNFFAELFKI--PFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSL 140 (380)
T ss_pred hHHHHHHHHHHHHHHhCC--CCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccC
Confidence 567787888888888884 3344 489999999987666554 2578899999999999999999999999899886
Q ss_pred CCCCCCCCHHHHHhhcccC---CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC---eEEEEccCCcccccCCCCCCc
Q 014172 210 ISENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR---LLVLSDEIYEHIIYAPATHTS 283 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~---~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~---i~vi~Deay~~~~~~~~~~~~ 283 (429)
+ ++.+|++.|+++++++ +.+|+++.++|+||.+.| +++|+++|++| + +++++|.+|+.+...-.....
T Consensus 141 ~--~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp---i~~I~~i~~~~-g~~~~~lHVDaA~gg~~~p~~~~~~ 214 (380)
T PRK02769 141 P--NGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN---IKEIQEILKKI-GIDDYYIHADAALSGMILPFVNNPP 214 (380)
T ss_pred C--CCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC---HHHHHHHHHHh-CCCceEEEEEecccceeecccCccc
Confidence 4 4569999999999875 888899999999999999 99999999999 7 799999999874321000000
Q ss_pred cccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh-------cccCCCchHHHHHHHHHHhcCCCChHH
Q 014172 284 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGEV 356 (429)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~-------~~~~~~~~~~q~aa~~~l~~~~~~~~~ 356 (429)
.++...+...+..|.+|.++ ....+|.++..++..+.+..... ....+.+.....++.++|.. .+.+.
T Consensus 215 --~~d~~~~vDsis~s~HK~~~-~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~--lg~~G 289 (380)
T PRK02769 215 --PFSFADGIDSIAISGHKFIG-SPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRS--LGSKG 289 (380)
T ss_pred --cCCccCCCCEEEECCcccCC-CCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHH--HCHHH
Confidence 11111245578889999887 34568999888776665421111 11122233444444455543 14567
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCceee-cCCceEEEEEecC
Q 014172 357 VSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFS 397 (429)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~~~~~~~~l~ 397 (429)
+++..++..+..+++.+.|++. |++.. .|.... +.++.|
T Consensus 290 ~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~-v~f~~~ 329 (380)
T PRK02769 290 LRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSIT-VVFPCP 329 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceE-EEEcCC
Confidence 8888888999999999999886 77655 455443 444433
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=152.01 Aligned_cols=304 Identities=16% Similarity=0.093 Sum_probs=201.6
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCC------CC-CCCCCCCHHHHHHHHHHHHhhcCCCCCC--CcEEEecChH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF------TR-YTPNAGTLELRSAICHKLKEENGLSYTP--DQILVSNGAK 165 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~------~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--~~i~~t~G~~ 165 (429)
..-|+|-..++. +.+.+.+++...+.+.+ .+ |+......++.....++..+.+|.+... -||-.- +++
T Consensus 148 ~~~l~LIASEN~--~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs 224 (586)
T PLN02271 148 FKGIELIASENF--VCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCT 224 (586)
T ss_pred hcCeeecccccc--CCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHH
Confidence 456888777776 34666666665554321 12 2223334566666667777778854332 355555 556
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCCChHHHH---------HHcCCEEEEec--CCCCCCCCCCHHHHHh-hcccCCcEEE
Q 014172 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMA---------RIADATPVILP--TRISENFLLDPKVLES-KLTEKSRLLI 233 (429)
Q Consensus 166 ~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~~~v~--~~~~~~~~~d~e~l~~-~l~~~~~~i~ 233 (429)
.+...++.++++|||+|+..+..|.++.... ...|..+..++ +++ .++.+|.+++++ +...++|+|+
T Consensus 225 ~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~-~~g~IDyd~lek~a~~~rPKLII 303 (586)
T PLN02271 225 SANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNP-QTGYIDYDKLEEKALDFRPKILI 303 (586)
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEccccc-ccCccCHHHHHHHhhhcCCeEEE
Confidence 6677789999999999999888777765432 34565555555 543 345699999998 6677999999
Q ss_pred EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 234 l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
+..-.|| ..++ +++|.++|+++ ++++++|.++......+..+++.. ....++.+|.+|++ .|.|.|.
T Consensus 304 ~g~Sayp--r~~D---~~~i~eIAdev-GA~LmvD~AH~aGLIa~g~~~sP~-----~~aDvvt~TTHKtL--rGPrGG~ 370 (586)
T PLN02271 304 CGGSSYP--REWD---YARFRQIADKC-GAVLMCDMAHISGLVAAKECVNPF-----DYCDIVTSTTHKSL--RGPRGGI 370 (586)
T ss_pred ECchhcc--CcCC---HHHHHHHHHHc-CCEEEEECcccccccccCcCCCCC-----cCCcEEEeCCcccC--CCCCceE
Confidence 8777777 6677 88999999999 999999999986544332222111 13458999999998 6788899
Q ss_pred EEcCHH--------------------HHHHHHHHhhccc-CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 014172 314 IAGPKH--------------------FVAACNKIQSQFT-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (429)
Q Consensus 314 v~~~~~--------------------~~~~l~~~~~~~~-~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (429)
++..++ +.+.+.....+.. .++.....++...++.... ...+..+.+...++.+.|.
T Consensus 371 I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~--~~efk~Ya~QVv~NAkaLA 448 (586)
T PLN02271 371 IFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVA--TPEYKAYMQQVKKNAQALA 448 (586)
T ss_pred EEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHH
Confidence 887653 4444444333322 2233333333344444211 2234778888889999999
Q ss_pred HHhccCCCceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 373 KSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 373 ~~L~~l~g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+.|.+. |++++. ..-+..+++++... + -....++++|++.||.++
T Consensus 449 ~~L~~~-G~~vv~ggTdnHlvLvDl~~~-g----------~~G~~ae~~Le~~~I~~N 494 (586)
T PLN02271 449 SALLRR-KCRLVTGGTDNHLLLWDLTTL-G----------LTGKNYEKVCEMCHITLN 494 (586)
T ss_pred HHHHHC-CCeEeeCCCCcceeeecCccc-C----------CCHHHHHHHHHHcCeEec
Confidence 999887 888763 33456788999653 1 245777788898899875
|
|
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=143.35 Aligned_cols=296 Identities=17% Similarity=0.183 Sum_probs=203.6
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.+++++|+.|+ ..+..+|+++++..+++++.-.+.+ --.|+....+.+...+.++++ .++.++.+.+-.+..
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~----rED~ilypscfdANa 141 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHG----REDTILYPSCFDANA 141 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhC----CCceEEeccccccch
Confidence 35789998887 6777789999999999976211111 125777777777777766655 456666666666777
Q ss_pred HHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc----CCcEEEEcCCCCCccCCC
Q 014172 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 170 ~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPtG~~~ 245 (429)
.++.+++.|.|.|+..+-.+.+..+.++++. .+ ..+|+-.++..+.+ +-|+|+....-...|.+.
T Consensus 142 g~feail~pedAvfSDeLNhASIIdGirLck----ry-------~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdia 210 (417)
T KOG1359|consen 142 GAFEAILTPEDAVFSDELNHASIIDGIRLCK----RY-------RHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIA 210 (417)
T ss_pred HHHHHhcChhhhhhccccccchhhhhhHHHh----hh-------ccchhHHHHHHHHHhhhheEEEEEecceeccCCCcc
Confidence 7889999999999999999999998888875 11 12577777655542 566777777788999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
| +++|.+++++| |.++++||+++-+.++..+......+..+.+.+++.++++|.+| |.-.||..+|..++.-++
T Consensus 211 P---l~ei~~La~kY-gaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlG--ga~GGyttgp~~li~llr 284 (417)
T KOG1359|consen 211 P---LEEISQLAKKY-GALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALG--GASGGYTTGPKPLISLLR 284 (417)
T ss_pred c---HHHHHHHHHhc-CcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhc--CCCCCCccCChhHHHHHH
Confidence 9 99999999999 99999999999887775554455555556678899999999996 444599999999999998
Q ss_pred HHhhcccCCCchH--HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCc
Q 014172 326 KIQSQFTSGASSI--SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 403 (429)
Q Consensus 326 ~~~~~~~~~~~~~--~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~ 403 (429)
+..+++-++.+.+ ..-.+.++++. --.-.......+.+.+.+++.++.- |+.+......+ +.+-+.+.
T Consensus 285 qr~RpylFSnslppavV~~a~ka~dl----lm~s~~~i~~~~a~~qrfr~~me~a-GftIsg~~hPI-~pv~lGda---- 354 (417)
T KOG1359|consen 285 QRSRPYLFSNSLPPAVVGMAAKAYDL----LMVSSKEIQSRQANTQRFREFMEAA-GFTISGASHPI-CPVMLGDA---- 354 (417)
T ss_pred hcCCceeecCCCChhhhhhhHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHhc-CceecCCCCCc-cceecccH----
Confidence 8766654443222 11222233332 0111233344455566666666554 88877544333 33333321
Q ss_pred ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 404 AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.-+..++++||+. |+.|
T Consensus 355 -------~lA~~~ad~lLk~-Gi~V 371 (417)
T KOG1359|consen 355 -------RLASKMADELLKR-GIYV 371 (417)
T ss_pred -------HHHHHHHHHHHhc-CceE
Confidence 1366888888887 7765
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-16 Score=151.56 Aligned_cols=213 Identities=19% Similarity=0.224 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~ 210 (429)
..|.+.|++.. | .+.++++++|..|+..++.+++++||.|+++...|.+....++ ..|.++.+++.
T Consensus 58 ~~le~~la~Le----~----g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~~d~-- 127 (386)
T PF01053_consen 58 RALEQRLAALE----G----GEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTFVDP-- 127 (386)
T ss_dssp HHHHHHHHHHH----T-----SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEEEST--
T ss_pred HHHHHHHHHhh----c----ccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEEeCc--
Confidence 35555555553 3 3679999999999999999999999999999999998775554 47999988874
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC-eEEEEccCCcccccCCCCCCccccCCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~-i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
-|++++++++++++++|++.+|.||+..+.+ +++|+++|+++ | +++|+|..+.-..+- .+ ..
T Consensus 128 -----~d~~~l~~~l~~~t~~v~~EspsNP~l~v~D---l~~i~~~a~~~-g~~~~vVDnT~atp~~~----~p-L~--- 190 (386)
T PF01053_consen 128 -----TDLEALEAALRPNTKLVFLESPSNPTLEVPD---LEAIAKLAKEH-GDILVVVDNTFATPYNQ----NP-LE--- 190 (386)
T ss_dssp -----TSHHHHHHHHCTTEEEEEEESSBTTTTB------HHHHHHHHHHT-TT-EEEEECTTTHTTTC-----G-GG---
T ss_pred -----hhHHHHHhhccccceEEEEEcCCCccccccc---HHHHHHHHHHh-CCceEEeeccccceeee----cc-Cc---
Confidence 2899999999999999999999999999999 99999999999 8 999999999752111 11 11
Q ss_pred CCCceEEEeccChhcccccce-eeEEEcC--HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTGWR-LGYIAGP--KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R-~G~v~~~--~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
.+.+|++.|.+|.++-.|-- .|.++++ .++.+.++......+...++.....+..-|+. +.-+.++..+
T Consensus 191 -~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~T-------l~~R~~~~~~ 262 (386)
T PF01053_consen 191 -LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRT-------LPLRMERQNE 262 (386)
T ss_dssp -GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred -CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCc-------HHHHHHHHHH
Confidence 34569999999998533333 5677754 47888888777766666666665555554443 5566677778
Q ss_pred HHHHHHHHhccCCCce
Q 014172 367 RRDFLVKSFGELEGVK 382 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~ 382 (429)
+...+.+.|++.|.++
T Consensus 263 nA~~lA~~L~~hp~V~ 278 (386)
T PF01053_consen 263 NAEALAEFLEEHPKVK 278 (386)
T ss_dssp HHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHHhCCCCC
Confidence 8888999999887764
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-16 Score=156.39 Aligned_cols=315 Identities=16% Similarity=0.116 Sum_probs=190.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++. +|.+.+++.+++.+... .+...-..+....+++.|.+..+. ..+.++++++++++..
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~-~~~~~~~~~~~~~la~~L~~~~~~--~~~~v~f~~SGseA~e 117 (433)
T PRK08117 41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMH-GPSGVIYYESILKLAEELAEITPG--GLDCFFFSNSGAEAIE 117 (433)
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCcHHHHHH
Confidence 578899998885 34444 78999999998865211 111111235556666666655421 2368999999999999
Q ss_pred HHHHHhcC-CC-CEEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCCCCC--CC--------CCHHHHHh
Q 014172 170 QAVLAVCS-PG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISEN--FL--------LDPKVLES 223 (429)
Q Consensus 170 ~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~~~--~~--------~d~e~l~~ 223 (429)
.+++.... .| ..|+..+-+|.+...... ..+. .+..+|...... .. -+++.+++
T Consensus 118 ~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 197 (433)
T PRK08117 118 GALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLES 197 (433)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHH
Confidence 99886421 23 568887877776543322 2111 112333221000 00 14556666
Q ss_pred hcc-----cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 224 KLT-----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 224 ~l~-----~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
.++ .++.+|++.......|.+. +.+.+++|.++|++| |+++|.||+|.+|...|.... ...+ +...-+
T Consensus 198 ~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tG~gr~G~~~~-~~~~----gv~pDi 271 (433)
T PRK08117 198 LFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRH-GILLIFDEVQTGFGRTGEWFA-AQTF----GVVPDI 271 (433)
T ss_pred HHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHc-CCEEEEecchhccCccccchh-Hhhc----CCCCCE
Confidence 553 2355555555566677664 778899999999999 999999999998655543211 1111 222235
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.||||.++ +|+++|++++++++++.+.......+++.+++++.++.++|+. .++ +.+.+..+++.+++.+.|++
T Consensus 272 ~t~sK~lg-~G~pigav~~~~~i~~~~~~~~~~~T~~~np~~~aaa~a~L~~---l~~--~~l~~~~~~~g~~l~~~L~~ 345 (433)
T PRK08117 272 MTIAKGIA-SGLPLSAVVASKELMEQWPLGSHGTTFGGNPVACAAALATLEV---IKE--EKLLDNANEMGAYALERLEV 345 (433)
T ss_pred eehhhhcc-CCCcceeEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHH
Confidence 79999999 8999999999999988875544445567789999999999875 111 13344445555555555554
Q ss_pred CC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+. ++....+..|.++++.+....+ .........+.+.|+++ ||.+
T Consensus 346 l~~~~~~~~~vrg~Gl~~gi~~~~~~~-----~~~~~~~~~~~~~l~~~-Gv~~ 393 (433)
T PRK08117 346 LKEKHPVIGDVRGIGLMIGIEIVDPDG-----EPDGDAVEKILDKCLEK-GLLF 393 (433)
T ss_pred HHhcCCceeeeecCCcEEEEEEecCCC-----CcchHHHHHHHHHHHHC-CCEE
Confidence 31 2212223445556666632100 00001245677777665 8764
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.9e-16 Score=154.68 Aligned_cols=316 Identities=14% Similarity=0.102 Sum_probs=194.9
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++- +|++.+++.+++.+. ..+....+..+.+..+++++.+..+.. ..+.+++++++++++
T Consensus 53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~ 130 (443)
T PRK06058 53 VDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARF-THTCFMVTPYEGYVAVAEQLNRLTPGD-HEKRSALFNSGAEAV 130 (443)
T ss_pred CCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCCC-CCCEEEEeCCcHHHH
Confidence 3578899998886 33444 789999999998753 223222334577777888887654311 124788999999999
Q ss_pred HHHHHHhc--CCCCEEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCCC----CCC--------CHHH
Q 014172 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISEN----FLL--------DPKV 220 (429)
Q Consensus 169 ~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~----~~~--------d~e~ 220 (429)
..+++... ...++|+....+|++....+... +. .+..+|.....+ ... ..+.
T Consensus 131 e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (443)
T PRK06058 131 ENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITV 210 (443)
T ss_pred HHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHH
Confidence 99888532 12378999999999887544332 11 122222111000 001 1233
Q ss_pred HHhhcc-cCCcEEEEcCCCCCc-cCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 221 LESKLT-EKSRLLILCSPSNPT-GSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 221 l~~~l~-~~~~~i~l~~p~NPt-G~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
+++.+. +++.+| |..|.+.. |.. .+++.+++|.++|++| |+++|.||++.+|...|... ....+.-..| +
T Consensus 211 l~~~~~~~~iAav-i~EPi~g~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfgRtG~~f-a~~~~gv~PD----i 283 (443)
T PRK06058 211 IEKQVGADNLAAV-IIEPIQGEGGFIVPAEGFLPALLEWCREN-GVVFIADEVQTGFARTGAWF-ACEHEGIVPD----L 283 (443)
T ss_pred HHHhhCCCceEEE-EECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcChhhh-HHHhcCCCCC----E
Confidence 444443 344454 45665544 444 4577899999999999 99999999999875544321 1111111112 3
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
-+++|.++ .|+++|++++++++++.+.......+++.+++++.++.+.|+. .++ +++.+..+++.+++.+.|++
T Consensus 284 v~~gK~l~-~G~Pi~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~---~~~--~~l~~~~~~~g~~l~~~L~~ 357 (443)
T PRK06058 284 ITTAKGIA-GGLPLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIET---IEE--DDLVARARQIEALMTDRLRA 357 (443)
T ss_pred EEEccccc-CCCccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHHHHH---HHH--cCHHHHHHHHHHHHHHHHHH
Confidence 45689999 8999999999999988876554556778899999999999875 222 24556666667777777766
Q ss_pred C----CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 L----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l----~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ +.+.-+++.|.|+.+--.++... .....-...+.+.|+++ ||.+
T Consensus 358 l~~~~~~i~~vrg~G~~~~i~~~~~~~~-----~~~~~~~~~l~~~~~~~-Gv~~ 406 (443)
T PRK06058 358 LAAEDDRIGDVRGRGAMIAIELVKPGTT-----EPDAELTKALAAAAHAA-GVIV 406 (443)
T ss_pred HHhhCCcEEeeeccceEEEEEEecCCCC-----CCcHHHHHHHHHHHHHC-CeEE
Confidence 4 22333567777754432221100 00000134566666665 8875
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-16 Score=154.25 Aligned_cols=233 Identities=21% Similarity=0.256 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 214 (429)
.+..+.+|+. || ..+..++++|+|.++..++++++++||.||++..+|-+....+.+.|+++++++.. .+.+
T Consensus 69 ~eAe~~aA~~----fG---Ad~t~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~-~~~~ 140 (417)
T PF01276_consen 69 KEAEELAARA----FG---ADKTFFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPE-DNEY 140 (417)
T ss_dssp HHHHHHHHHH----HT---ESEEEEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEE-E-TT
T ss_pred HHHHHHHHHh----cC---CCeEEEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCC-cccc
Confidence 3455555555 45 45678999999999999999999999999999999999999999999999999865 2222
Q ss_pred ----CCCH-----HHHHhhccc--CCcE---EEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCC
Q 014172 215 ----LLDP-----KVLESKLTE--KSRL---LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPA 279 (429)
Q Consensus 215 ----~~d~-----e~l~~~l~~--~~~~---i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~ 279 (429)
.+++ +.|+++++. ..|+ ++|++|+. -|.+++ +++|+++|+++ ++.|++||||+. +.|. .
T Consensus 141 gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~llvDEAhGah~~F~-~ 214 (417)
T PF01276_consen 141 GIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYD---IKEIAEICHKH-GIPLLVDEAHGAHFGFH-P 214 (417)
T ss_dssp S-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE----HHHHHHHHCCT-ECEEEEE-TT-TTGGCS-G
T ss_pred CCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEEC---HHHHHHHhccc-CCEEEEEccccccccCC-C
Confidence 3466 899988863 4444 99999987 799999 99999999999 999999999884 4454 2
Q ss_pred CCCccccCCC---CCCceEEEeccChhccccccee-eEEEcCHH---HHHHHHHHhhcc-cCCCchHHHHHHHHHHhcCC
Q 014172 280 THTSFASLPG---MWERTLTVNGFSKAFAMTGWRL-GYIAGPKH---FVAACNKIQSQF-TSGASSISQKAGVAALGLGY 351 (429)
Q Consensus 280 ~~~~~~~~~~---~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~---~~~~l~~~~~~~-~~~~~~~~q~aa~~~l~~~~ 351 (429)
.+.+...+.. ....++++.|.+|.+ +++.- +++....+ -.+++.+..... +.+|+.+..+..-.+...
T Consensus 215 lp~~a~~~gad~~~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~-- 290 (417)
T PF01276_consen 215 LPRSALALGADRPNDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQ-- 290 (417)
T ss_dssp GGTTCSSTTSS-CTSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHH--
T ss_pred CccchhhccCccccccceeeeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHH--
Confidence 2222222221 134679999999998 45554 45544333 234555443333 333444433322222221
Q ss_pred CC-hHHHHHHHHHHHHHHHHHHHHh---ccCCCceeecC
Q 014172 352 AG-GEVVSKMVKAFRERRDFLVKSF---GELEGVKMSEP 386 (429)
Q Consensus 352 ~~-~~~~~~~~~~~~~~r~~l~~~L---~~l~g~~~~~p 386 (429)
. ...-+++.++..++.+.+++.+ .++.++++..|
T Consensus 291 -m~~~~G~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~ 328 (417)
T PF01276_consen 291 -MEEEEGRELLEEAIELAEEFRKKINRLNDIWGFKVLGP 328 (417)
T ss_dssp -HSHHHHHHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-
T ss_pred -HhhhhhHHHHHHHHHHHHHHHHHHHhcCCCceEecCCc
Confidence 1 1222334444445555555555 55656665433
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-15 Score=149.77 Aligned_cols=250 Identities=23% Similarity=0.237 Sum_probs=161.8
Q ss_pred ChHHHHHHHHHHHHcCC-CCCCCC---CC--CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEE
Q 014172 109 TPVLIAEAGINAIREGF-TRYTPN---AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~-~~Y~~~---~G--~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~V 182 (429)
.|+++.+++.+.+.... ..|... .| +..+++.+++++ | .+.++++++++.++.+++.+ +.+||+|
T Consensus 98 l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~----G----ae~a~vv~sgtaAl~l~l~~-l~~GdeV 168 (464)
T PRK04311 98 LSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALT----G----AEDALVVNNNAAAVLLALNA-LAAGKEV 168 (464)
T ss_pred CCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHh----C----CCeEEEECCHHHHHHHHHHH-hCCCCEE
Confidence 47889999988876431 122221 12 245666666664 3 34677888888999988865 5799999
Q ss_pred EEcCCCCCC------hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCC--cc--CCCCHHHHHH
Q 014172 183 IIPAPFWVS------YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP--TG--SVYPKNLLDE 252 (429)
Q Consensus 183 lv~~p~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NP--tG--~~~~~~~l~~ 252 (429)
++++..+.. ....++..|++++.++... ..++++++++++++|++|++.+++|| +| ...+ +++
T Consensus 169 Ivs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~d---l~e 241 (464)
T PRK04311 169 IVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVS---LAE 241 (464)
T ss_pred EEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCC---HHH
Confidence 999864431 2346778899999998642 24799999999999999999999998 34 5567 999
Q ss_pred HHHHHHhCCCeEEEEccCCcccc----cCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh
Q 014172 253 IARIVAKHPRLLVLSDEIYEHII----YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~ 328 (429)
|+++|++| |+++|+|.+.+.+. |+-...+.+.... ..+..++++|.+|.+| |...|++++.+++++.+++..
T Consensus 242 I~~lak~~-gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l-~~GaDiv~fSg~K~Lg--Gp~~G~i~g~~~li~~l~~~~ 317 (464)
T PRK04311 242 LAALGKEH-GLPVVYDLGSGSLVDLSQYGLPDEPTVQELL-AAGVDLVTFSGDKLLG--GPQAGIIVGKKELIARLKKHP 317 (464)
T ss_pred HHHHHHHc-CCeEEEECCCcccccchhccCCCCCchhhHH-hcCCcEEEecCccccc--CCceEEEEEcHHHHHHHhhch
Confidence 99999999 99999999654331 2101112222211 1456799999999986 446899999999988776421
Q ss_pred hcccCCCchHHHHHHHHHHhcCCC-Ch--------HHHHHHHHHHHHHHHHHHHHhccC
Q 014172 329 SQFTSGASSISQKAGVAALGLGYA-GG--------EVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~l~~~~~-~~--------~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
.............+..+.|..... .. +.+....++.+++...+.+.|+..
T Consensus 318 ~~r~lr~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~ 376 (464)
T PRK04311 318 LKRALRVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAA 376 (464)
T ss_pred hHHHHhcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 111111223333333333321000 01 112233466667788888888775
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-15 Score=152.58 Aligned_cols=312 Identities=13% Similarity=0.104 Sum_probs=184.9
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-cEEE-ecChHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILV-SNGAKQS 167 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~-t~G~~~a 167 (429)
.|+..||+..|.. .++- +|.+.+++.+.+.+...... .....+.+..+++.+.+....+...+ .+++ +++++++
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA 115 (425)
T PRK09264 37 DGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHG-LDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNA 115 (425)
T ss_pred CCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccc-cccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHH
Confidence 5788999988863 3343 78999999998864211111 11123455666666654321111112 5655 5899999
Q ss_pred HHHHHHHhcC-CC-CEEEEcCCCCCChHHHHHHc-C------------CEEEEecCCCCCCC-CCCHHHHHhhccc----
Q 014172 168 ILQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRISENF-LLDPKVLESKLTE---- 227 (429)
Q Consensus 168 l~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~-~~d~e~l~~~l~~---- 227 (429)
++.+++.... .| .+|+....+|.+....+... | ..++.+|.+..... .-|++.+++.+..
T Consensus 116 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~ 195 (425)
T PRK09264 116 VEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSG 195 (425)
T ss_pred HHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCC
Confidence 9988887632 23 67888888888765433222 1 12344443211000 0167788887742
Q ss_pred --CCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 228 --KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 228 --~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
++.+|++.......|. +.+.+.+++|.++|++| |+++|+||++.++...|.. .......-..+ +.+|+|.+
T Consensus 196 ~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG~~-~~~~~~~v~PD----i~t~~K~l 269 (425)
T PRK09264 196 VDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKH-DILLIVDDIQAGCGRTGTF-FSFERAGITPD----IVTLSKSI 269 (425)
T ss_pred CCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEechhhCCccccHH-HHHhhcCCCCC----EEEecccc
Confidence 3456666555666776 56888999999999999 9999999999876433321 11111111112 45789999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCC
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEG 380 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l~g 380 (429)
+..|.++|++++++++ ..+.......+++.+.++..++.+++..-. ++ .++.+..+++.+++.+.|++ .+.
T Consensus 270 ~~~G~pigav~~~~~i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~--~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~ 344 (425)
T PRK09264 270 SGYGLPMALVLIKPEL-DVWKPGEHNGTFRGNNLAFVTATAALEEYW--SD--DAFEKEVKAKGELVRERLEEIAAKYPG 344 (425)
T ss_pred CCCccceEEEEEchhh-hccCCCccCCCCCCCHHHHHHHHHHHHHHH--hh--hHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9449999999999886 343322223345566777777767773200 11 13444445555555555544 332
Q ss_pred ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 ~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.......|+++++.++.. ....+++..|+++ ||.+
T Consensus 345 ~~~~vrg~Gl~~~i~l~~~-----------~~~~~l~~~~~~~-Gv~~ 380 (425)
T PRK09264 345 LGAEVRGRGMMQGIDFGDG-----------ELAGKIAAEAFEN-GLII 380 (425)
T ss_pred ceecceecccEEEEEecCh-----------HHHHHHHHHHHHC-CCEE
Confidence 3222234567788888642 1356788888776 7765
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-15 Score=151.07 Aligned_cols=303 Identities=17% Similarity=0.096 Sum_probs=182.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-C-----C-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEE---ecCh
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGF-T-----R-YTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGA 164 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~-----~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~---t~G~ 164 (429)
++.|+|-..++. +++.+.+++...+.+.+ . + |+......++.+...+...+.++. ....+.+ ..++
T Consensus 34 ~~~l~liasen~--~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~--~~~~~~~nv~~~SG 109 (475)
T PLN03226 34 WKGLELIASENF--TSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRL--DPEKWGVNVQPLSG 109 (475)
T ss_pred HcCeeEecCCcc--CCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCC--CcceeEEecCcCch
Confidence 356888888877 45678888877773321 1 2 222222234444333444445552 3333333 3566
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHH------HHHcCCEEE----EecCCCCCCCCCCHHHHHhhcc-cCCcEEE
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEM------ARIADATPV----ILPTRISENFLLDPKVLESKLT-EKSRLLI 233 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~------~~~~g~~~~----~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~ 233 (429)
+.++..++.++++|||+|+..+....++... .+..+.... .+.++. +++.+|+++|++.+. .++++|+
T Consensus 110 ~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~~pklIv 188 (475)
T PLN03226 110 SPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLFRPKLII 188 (475)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhcCCeEEE
Confidence 7778889999999999999865322222211 112222221 334443 346799999999886 4677665
Q ss_pred EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 234 l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
+ ..++ +|...+ +++|.++|+++ |.++++|+++..........++. + ....++++|++|++ .|.+.|+
T Consensus 189 ~-~~S~-~s~~~D---~a~i~~ia~~~-ga~LlvD~AH~~Gli~~~~~~~p--~---~~~Div~~t~hK~L--~GP~Gg~ 255 (475)
T PLN03226 189 A-GASA-YPRDWD---YARMRKIADKV-GALLMCDMAHISGLVAAQEAASP--F---EYCDVVTTTTHKSL--RGPRGGM 255 (475)
T ss_pred E-ecCc-CCCccC---HHHHHHHHHHc-CCEEEEEchhhhCcccCCCCCCC--C---CCCeEEEecCcccc--cCCCceE
Confidence 5 3344 778888 88999999999 99999999998755443222111 1 13458999999998 3444599
Q ss_pred EEcCHHHH-----------HH---HHHHhh-cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 014172 314 IAGPKHFV-----------AA---CNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 314 v~~~~~~~-----------~~---l~~~~~-~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
++++++.+ +. +..... .+..+++.....++.++|+.- .....+.++++..++.+++.+.|.+.
T Consensus 256 I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i--~~~~~~~~~~~~~~na~~L~~~L~~~ 333 (475)
T PLN03226 256 IFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQA--MTPEFKAYQKQVKANAAALANRLMSK 333 (475)
T ss_pred EEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 98877544 22 111111 123333444444444555531 11234667888899999999999886
Q ss_pred CCceeecCC-ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 379 EGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 379 ~g~~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
|+++..+. .+..+++++... + .+..++.+. |++.||.++
T Consensus 334 -G~~l~~~~t~~hi~lv~~~~~-g---------i~~~~~~~~-L~~~~I~~n 373 (475)
T PLN03226 334 -GYKLVTGGTDNHLVLWDLRPL-G---------LTGSRVEKV-LDLAHITLN 373 (475)
T ss_pred -CCEEEcCCCCCCEEEEEccCC-C---------CCHHHHHHH-HHHCCCEEC
Confidence 99887532 245577887432 1 245555554 566788764
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.1e-16 Score=153.66 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~ 209 (429)
...+++.+++++ | . +..+++++++.++.+++.+++++||+|+++...|.+.. ..+...|+++++++ +
T Consensus 71 ~~~le~~la~l~----g---~-~~~v~fsSG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-~ 141 (437)
T PRK05613 71 VEALENRIASLE----G---G-VHAVAFASGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE-N 141 (437)
T ss_pred HHHHHHHHHHHh----C---C-CeEEEeCCHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-C
Confidence 356666666664 3 2 34455555557888888888999999999999998764 44577899999997 2
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
+ .|++.+++++++++++|++.++.||+|.+.+ +++|.++|+++ |+++|+|.++..... ..++ .
T Consensus 142 ~-----~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~d---i~~I~~la~~~-gi~livD~t~a~g~~----~~p~-~--- 204 (437)
T PRK05613 142 P-----DDPESWQAAVQPNTKAFFGETFANPQADVLD---IPAVAEVAHRN-QVPLIVDNTIATAAL----VRPL-E--- 204 (437)
T ss_pred C-----CCHHHHHHhCCccCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCeEEEECCCccccc----cChH-H---
Confidence 2 2899999999999999999999999999999 99999999999 999999999865211 1111 1
Q ss_pred CCCceEEEeccChhcccccceeeEEEc-CHHH-----------------------------------H-HHHHHHhhccc
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAG-PKHF-----------------------------------V-AACNKIQSQFT 332 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~-----------------------------------~-~~l~~~~~~~~ 332 (429)
.+..+++.|++|.++-.|.-+|-+++ +.++ . +.........+
T Consensus 205 -~GaDivv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 283 (437)
T PRK05613 205 -LGADVVVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTG 283 (437)
T ss_pred -hCCCEEEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcC
Confidence 24569999999999755655555443 2210 0 11112333445
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.+.+++....+..-| +-+.-+.++..++...+.+.|++.|.+.
T Consensus 284 ~~~~p~~a~l~~rgl-------~TL~lR~~~~~~nA~~lA~~L~~hp~V~ 326 (437)
T PRK05613 284 ATLSPFNAWVTAQGL-------DTLSLRLERHNENAIKVAEFLNNHEKVA 326 (437)
T ss_pred CCCCHHHHHHHHccc-------CcHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 556666544444333 3356667777888888999999887653
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-15 Score=151.63 Aligned_cols=315 Identities=16% Similarity=0.088 Sum_probs=188.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|. ..++- +|++.+++.+++.+..+.. ...-..+.+..+++.+.+..+. ..+.+++++++++++.
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~-~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~e 116 (423)
T PRK05964 40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVI-FAGFTHEPAERLAQRLVALTPG--GLDHVFFSDSGSVAVE 116 (423)
T ss_pred CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHHH
Confidence 577899998885 33444 7899999999887532111 1011235566777777655421 2368999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCCCCHHHHHhhcc--
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLT-- 226 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~e~l~~~l~-- 226 (429)
.+++.... +| .+|+...-+|++....+..... .+..++....+....+++.+++.+.
T Consensus 117 ~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~ 196 (423)
T PRK05964 117 VALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKH 196 (423)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhC
Confidence 99887531 23 5788888888875543332111 1223332211100112788888774
Q ss_pred -cCCcEEEEcC-CCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 227 -EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 227 -~~~~~i~l~~-p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
++..+|++.. .++..|... +.+.+++|.++|++| |+++|+||++.++...|.. ...... +...-+.+++|.
T Consensus 197 ~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~-g~llI~DEv~tg~gr~G~~-~a~~~~----~v~pDi~~~~K~ 270 (423)
T PRK05964 197 AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRH-GVLLIFDEIATGFGRTGTL-FACEQA----GVSPDIMCLSKG 270 (423)
T ss_pred CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcch-hHHHhc----CCCCCeeeeehh
Confidence 2445665544 367778665 888999999999999 9999999999876444421 111111 111224578999
Q ss_pred cccccceeeEEEcCHHHHHHHHHH------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
++..++++|++++++++++.+... ....+++.+.++..++.++|+.-. .++++++..+.-+..++.+.+ +.+
T Consensus 271 l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~-~~~~~~~~~~~g~~l~~~l~~-l~~ 348 (423)
T PRK05964 271 LTGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFE-DEPVLERVAALSAGLAEGLEP-FRD 348 (423)
T ss_pred hhcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHh-hcc
Confidence 983338999999999999887532 112334567888888888887310 123444444444444443332 223
Q ss_pred CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+.-+...|.+ +.+.+..... ......+.+.|+++ ||.+
T Consensus 349 ~~~i~~vrg~Gl~-~~i~l~~~~~--------~~~~~~l~~~l~~~-Gv~v 389 (423)
T PRK05964 349 LPGVADVRVLGAI-GAVELDRPVL--------ERDGPALRAFALER-GVLL 389 (423)
T ss_pred CCCeEEeecccEE-EEEEeccCcc--------hhHHHHHHHHHHHC-CeEE
Confidence 4444323444544 5566643100 00256788888765 8875
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-16 Score=139.82 Aligned_cols=296 Identities=18% Similarity=0.286 Sum_probs=197.4
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
.+||-+..-.. |..++.+++.++.. +..-|+.++...+|.+.+|+.++++. -.++++|+...+. +++.-|
T Consensus 23 ~vDLRSDTvT~-PTdeMr~am~eA~v-gDdVyGeD~tt~rLE~~vA~l~GKEA-------gLFv~SGTmgNll-aIm~Hc 92 (384)
T KOG1368|consen 23 SVDLRSDTVTV-PTDEMRRAMAEASV-GDDVYGEDPTTNRLEQRVAELFGKEA-------GLFVPSGTMGNLL-AIMVHC 92 (384)
T ss_pred ccccccccccC-ChHHHHHHHhhccc-CcccccCCccHHHHHHHHHHHhCccc-------eeeecccccccHH-HHHHHh
Confidence 45555444322 24788888888754 33457777777899999999875432 3566666665555 556655
Q ss_pred -CCCCEEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc--------CCcEEEEcCCCCCcc-C
Q 014172 177 -SPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE--------KSRLLILCSPSNPTG-S 243 (429)
Q Consensus 177 -~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~--------~~~~i~l~~p~NPtG-~ 243 (429)
++|.+|++.+-+|.-.. .+..+.|+.++.+.. +++..+|+++|++++.. .+++|++.|-+|-+| .
T Consensus 93 ~~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~--e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~ 170 (384)
T KOG1368|consen 93 HQRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKN--ENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGK 170 (384)
T ss_pred cCCCceEEeccchheeehhccChhhhccceeEeeee--CCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCce
Confidence 59999999998776433 245567777776654 45566999999999862 479999988877666 9
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEE-EcCHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI-AGPKHFVA 322 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v-~~~~~~~~ 322 (429)
++|.|++++|.++|++| ++.+..|.+--+-.-- ....++..+....|.+=+ .|||.+|.| +|-+ ++++++++
T Consensus 171 vlPle~~~~v~~lak~~-glkLH~DGARi~NAav-asgV~vk~i~~~fDSVsi--CLSKglgAP---VGSViVG~k~FI~ 243 (384)
T KOG1368|consen 171 VLPLEELDRVKALAKRH-GLKLHMDGARIFNAAV-ASGVPVKKICSAFDSVSI--CLSKGLGAP---VGSVIVGSKDFID 243 (384)
T ss_pred EeeHHHHHHHHHHHhcc-CCeeecchhhhhhHHH-HcCCCHHHHHHhhhhhhh--hhhccCCCC---cccEEEccHHHHH
Confidence 99999999999999999 9999999885431100 011233333332333333 389998743 5654 58999999
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC--CceEEEEEecCCcc
Q 014172 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFYLFIDFSTYY 400 (429)
Q Consensus 323 ~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p--~~~~~~~~~l~~~~ 400 (429)
..+..+...+.+.-+.+..++++.... ++... ..+.-.++...+.+.+...+++++..| +.+| +.+.+-..
T Consensus 244 kA~~~RKalGGGmRQsGvLaaaaLval----~~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNi-v~~~l~q~- 316 (384)
T KOG1368|consen 244 KARHFRKALGGGMRQSGVLAAAALVAL----DENVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNI-VNMVLCQA- 316 (384)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHh----hcchH-HHHHHHHHHHHHHHHhccccceeeecchhhcce-eeeecccc-
Confidence 988887777777766666555555543 22233 333444566667788887766776655 4444 66555321
Q ss_pred CCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+.++++++|.+. ||.+
T Consensus 317 ---------~~~~~~l~~~~~k~-gi~l 334 (384)
T KOG1368|consen 317 ---------RLTAEELCKFLEKN-GILL 334 (384)
T ss_pred ---------cCCHHHHHHHHHHC-CeEE
Confidence 13889999998654 8764
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-15 Score=147.35 Aligned_cols=303 Identities=17% Similarity=0.160 Sum_probs=183.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCC------C-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcE-EEecChHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFT------R-YTPNAGTLELRSAICHKLKEENGLSYTPDQI-LVSNGAKQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~------~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i-~~t~G~~~a 167 (429)
..|+|-..++. +++.+.+++...+.+.+. + |+...-..++.+...++..+.||.....+.+ +-..+++.+
T Consensus 21 ~~l~LiaSEN~--~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~A 98 (399)
T PF00464_consen 21 STLNLIASENY--MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQA 98 (399)
T ss_dssp HSEE-CTT-------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHH
T ss_pred cCccccCcccc--cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHH
Confidence 46999888876 345666666655543221 1 2222223466666677778888854222233 233467778
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHH---HH-------HHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPE---MA-------RIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCS 236 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~---~~-------~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~ 236 (429)
...++.+|++|||+|+..++...++.. .. .....+.+.++++++ ++.+|.+++++.+.. ++|+|++..
T Consensus 99 n~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G~ 177 (399)
T PF00464_consen 99 NLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPD-TGLIDYDELEKLAKEHKPKLIICGA 177 (399)
T ss_dssp HHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TT-TSSB-HHHHHHHHHHH--SEEEEE-
T ss_pred HHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecC-CCeECHHHHHHHHhhcCCCEEEECc
Confidence 888999999999999999887765542 11 223467888888764 577999999998864 899988744
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~ 315 (429)
-.+| ..++ ++++.++|++. |.+++.|-+|.. ++-+|..+-++ .. ..|+.+|.+|+| +|.|-|.++
T Consensus 178 S~y~--~~~d---~~~~reIad~v-ga~l~~D~sH~~GLIa~g~~~~P~-~~-----ADvvt~sThKtl--~GPrggiI~ 243 (399)
T PF00464_consen 178 SSYP--RPID---FKRFREIADEV-GAYLMADISHIAGLIAGGLFPNPF-PY-----ADVVTGSTHKTL--RGPRGGIIL 243 (399)
T ss_dssp SSTS--S------HHHHHHHHHHT-T-EEEEE-TTTHHHHHTTSS--GC-CT-----SSEEEEESSGGG---SSS-EEEE
T ss_pred hhcc--CccC---HHHHHHHHHhc-CcEEEecccccccceehheecCcc-cc-----ceEEEeeccccc--cccCceEEE
Confidence 3333 2234 89999999999 999999999874 33344322233 22 239999999998 899999999
Q ss_pred cC--------------HHHHHHHHHHhhcccCCCchHHHHHHH-HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 316 GP--------------KHFVAACNKIQSQFTSGASSISQKAGV-AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 316 ~~--------------~~~~~~l~~~~~~~~~~~~~~~q~aa~-~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
++ +++.+.+.+...+...+.+.....++. .+|... .....++..++..++.+.|.+.|.+. |
T Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea--~~~~fk~Ya~qVv~NAk~La~~L~~~-G 320 (399)
T PF00464_consen 244 TNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEA--LSPEFKEYAKQVVKNAKALAEALQER-G 320 (399)
T ss_dssp ES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred EcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcc--cCHHHHHHHHHHHHHHHHHHHHHhhC-C
Confidence 99 788888888766655444444443333 333321 13446788888889999999999998 8
Q ss_pred ceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 381 VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 381 ~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+++.. ...+..+|+++... + .+. .-+++.|++.||.++
T Consensus 321 ~~v~~ggTd~H~vlvd~~~~-~---------~~g-~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 321 FKVVTGGTDNHQVLVDLRSF-G---------IDG-KEAEKALEEAGIIVN 359 (399)
T ss_dssp -EEGGGS-SSSEEEEEGGGG-T---------S-H-HHHHHHHHHTTEE-E
T ss_pred cEEEECCCCCCeEEEEeccc-c---------cch-HHHHHHHHhcCeeec
Confidence 88863 33456689999653 1 134 445667788899874
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.1e-15 Score=147.67 Aligned_cols=267 Identities=14% Similarity=0.076 Sum_probs=183.4
Q ss_pred HHHHHHHHHHcCCCC----CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcE--EEecChHHHHHHHHHHhc--CCCCEEEE
Q 014172 113 IAEAGINAIREGFTR----YTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAVC--SPGDEVII 184 (429)
Q Consensus 113 v~~a~~~~~~~~~~~----Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l~--~~gd~Vlv 184 (429)
.++++.+.+.+...+ +.......++.+.+.+++.+.+|. +++++ ++|+|+|+++..++.+.. .++..|++
T Consensus 39 ~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~--~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~ 116 (374)
T PLN03032 39 ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWEL--EKDEYWGYITTCGTEGNLHGILVGREVFPDGILYA 116 (374)
T ss_pred HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCC--CCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEe
Confidence 466666655432211 111124578888888888888884 56665 999999999998887654 24568999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 185 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
+.-.|.+....++.+|.+++.||++. ++.+|++.|++++++ ++.+|+++..+|+||++-| +++|+++|++|
T Consensus 117 s~~~H~Sv~kaa~~lg~~~~~V~~d~--~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp---i~eI~~i~~~~- 190 (374)
T PLN03032 117 SRESHYSVFKAARMYRMEAVKVPTLP--SGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD---LDRILRILKEL- 190 (374)
T ss_pred CCCceeHHHHHHHHcCCCCeEeeeCC--CCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC---HHHHHHHHHHh-
Confidence 99999999999999999999999864 456999999999976 4667778889999999999 99999999998
Q ss_pred C-----eEEEEccCCcccc--cCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc---
Q 014172 262 R-----LLVLSDEIYEHII--YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--- 331 (429)
Q Consensus 262 ~-----i~vi~Deay~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~--- 331 (429)
+ +|+++|.+|+.+. |... .+. ..+. .....+..|.+|.++ ....+|.++..++.++.+.....+.
T Consensus 191 g~~~~~~~lHvDaA~gg~~~p~~~~-~~~-~~~~--~~vDSis~s~HK~~g-~P~g~G~ll~r~~~~~~~~~~~~Yl~~~ 265 (374)
T PLN03032 191 GYTEDRFYIHCDGALFGLMMPFVSR-APE-VTFR--KPIGSVSVSGHKFLG-CPMPCGVALTRKKHVKALSQNVEYLNSR 265 (374)
T ss_pred CCCCCCeeEEEEccchhhhhhccCC-Ccc-cCCC--cCCcEEEECcccccC-CCcCeEEEEEEchhhHhhccCCcccCCC
Confidence 6 5999999998642 2111 011 1111 134467888999887 3456899998877665543211111
Q ss_pred --cCCCch--HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-ecCCceEEEEEec
Q 014172 332 --TSGASS--ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQGAFYLFIDF 396 (429)
Q Consensus 332 --~~~~~~--~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~~p~~~~~~~~~l 396 (429)
+...+. .....+-..|.. .+.+.+.++.++.-++.+++.+.|++. ++++ ..|.... +.+.-
T Consensus 266 d~ti~gSR~g~~~l~~w~~l~~--~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~-V~f~~ 331 (374)
T PLN03032 266 DATIMGSRNGHAPLYLWYTLRR--KGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSST-VVFER 331 (374)
T ss_pred CCcccCCCchHHHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceE-EEEcC
Confidence 111222 222233333332 246778888888888999999999887 6654 4565554 44443
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-14 Score=143.90 Aligned_cols=198 Identities=23% Similarity=0.253 Sum_probs=138.4
Q ss_pred ChHHHHHHHHHHHHcCC-CCCCCC---CC--CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEE
Q 014172 109 TPVLIAEAGINAIREGF-TRYTPN---AG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~-~~Y~~~---~G--~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~V 182 (429)
.|+++++++.+.+.... ..|.-. .| ...+++.+++++ | .+..+++++++.++.+++.+ +.+||+|
T Consensus 93 l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~----g----ae~alvv~sg~aAi~l~l~~-l~~GdeV 163 (454)
T TIGR00474 93 LAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELT----G----AEDALVVNNNAAAVLLALNT-LAKGKEV 163 (454)
T ss_pred CCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHH-hCCcCEE
Confidence 47899999988876421 122211 11 246667777665 3 23456677788888877754 6899999
Q ss_pred EEcCCCCCC------hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCc--c--CCCCHHHHHH
Q 014172 183 IIPAPFWVS------YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT--G--SVYPKNLLDE 252 (429)
Q Consensus 183 lv~~p~y~~------~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPt--G--~~~~~~~l~~ 252 (429)
++++..|.. ....++..|++++.++.+. ..++++++++++++|++|++.+++|++ | .+.+ +++
T Consensus 164 Ivs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~d---l~~ 236 (454)
T TIGR00474 164 IVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVS---IAE 236 (454)
T ss_pred EECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCC---HHH
Confidence 999876432 2356778899999998642 148999999999999999999999985 6 4678 999
Q ss_pred HHHHHHhCCCeEEEEccCCcccc----cCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH
Q 014172 253 IARIVAKHPRLLVLSDEIYEHII----YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~ 326 (429)
|+++|++| |+++++|.+.+.+. |+-...+.+.... ..+..++++|.+|.++ |...|++++.+++++.+.+
T Consensus 237 I~~la~~~-g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~-~~GaDiv~fSg~K~Lg--Gp~~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 237 LVALGREH-GLPVMEDLGSGSLVDLSRYGLPDEPTVQEVI-AAGVDLVTFSGDKLLG--GPQAGIIVGKKELIERLKK 310 (454)
T ss_pred HHHHHHHc-CCeEEEECCCcccccchhccCCCCcccccHh-HcCCCEEEecCccccC--CCeEEEEEECHHHHHhhhh
Confidence 99999999 99999998644321 1100111112211 2355699999999985 3458999999988876543
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.8e-15 Score=141.96 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=161.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEe
Q 014172 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 206 (429)
Q Consensus 131 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 206 (429)
++....|.+.++++- ..+..+.++++..||..++.+++++||.|++++..|.+... ..+..|.++.++
T Consensus 62 nPT~~~lE~~~a~LE--------g~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 62 NPTRDALEEALAELE--------GGEDAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred CccHHHHHHHHHHhh--------CCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEE
Confidence 344567777777763 35678999999999999999999999999999999987654 445678998888
Q ss_pred cCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 207 PTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
+. -+.+.+++++. +++|+|++.+|.||+-.+.+ +++|+++|+++ ++++|+|+.|.--++. .
T Consensus 134 d~-------~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~D---I~~i~~~A~~~-g~~vvVDNTfatP~~q-------~ 195 (396)
T COG0626 134 DP-------GDDEALEAAIKEPNTKLVFLETPSNPLLEVPD---IPAIARLAKAY-GALVVVDNTFATPVLQ-------R 195 (396)
T ss_pred CC-------CChHHHHHHhcccCceEEEEeCCCCccccccc---HHHHHHHHHhc-CCEEEEECCccccccc-------C
Confidence 74 25666666666 59999999999999999999 99999999999 8999999999853321 1
Q ss_pred cCCCCCCceEEEeccChhccccc-ceeeEEEcCHH-HHHHHHHHhh-cccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKH-FVAACNKIQS-QFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~-~~~~l~~~~~-~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
.+ ..+..|++.|.+|.++-.+ .=.|.++++.+ +.+.+..... ..+...+++....+..-++ -+.-+.+
T Consensus 196 PL--~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlk-------TL~~Rm~ 266 (396)
T COG0626 196 PL--ELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLR-------TLALRME 266 (396)
T ss_pred hh--hcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccc-------hHHHHHH
Confidence 11 1356699999999996333 33465665654 4444433333 3555667776555444433 3666777
Q ss_pred HHHHHHHHHHHHhccCCCce
Q 014172 363 AFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~ 382 (429)
+..++...+.+.|++.|.++
T Consensus 267 ~~~~nA~~IA~~L~~~p~V~ 286 (396)
T COG0626 267 RHNENALKIAEFLADHPKVK 286 (396)
T ss_pred HHHHHHHHHHHHHhcCCCeE
Confidence 78888888999999877764
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-15 Score=146.30 Aligned_cols=213 Identities=10% Similarity=0.131 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEec
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVILP 207 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~ 207 (429)
+...+|.+.++++. | .+.++++++++.+|.+++.+++++||+|+++.+.|.... ..+...|+++++++
T Consensus 64 P~~~~lE~~la~le----g----~~~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd 135 (384)
T PRK06434 64 PTVQAFEEKYAVLE----N----AEHALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYID 135 (384)
T ss_pred hhHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEEC
Confidence 33456777777764 2 346788888889999999999999999999988766544 55677899999999
Q ss_pred CCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 208 ~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
.++.+.+.+++ +++++|++.+|.|||+.+.+ +++|.++|+++ ++ ++|.++..- +.+ .++ .
T Consensus 136 ~~~~~~~~l~~--------~~tklv~~e~~snpt~~v~D---i~~I~~la~~~-~l--vVD~t~~s~-~~~---~pl-~- 195 (384)
T PRK06434 136 TDRLNSLDFDP--------SNYDLIYAESITNPTLKVPD---IKNVSSFCHEN-DV--IVDATFASP-YNQ---NPL-D- 195 (384)
T ss_pred CCChhheeecC--------CCeeEEEEEcCCCCCceeec---HHHHHHHHHHc-Ce--EEECCCCCc-ccC---Cch-h-
Confidence 86433332221 26899999999999999988 99999999999 74 459997431 111 111 1
Q ss_pred CCCCCceEEEeccChhccccc-ceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 288 PGMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
.+-.+++.|.+|.++-+| .=.|.+++ ++++.+.++......+...+.+....+..- -+.+..+.++.+
T Consensus 196 ---~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~g-------L~tL~~R~~r~~ 265 (384)
T PRK06434 196 ---LGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRG-------LKTLGLRMEKHN 265 (384)
T ss_pred ---cCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhC-------CCcHHHHHHHHH
Confidence 245599999999996434 33577766 456666666554444444555433322222 234667777778
Q ss_pred HHHHHHHHHhccCCCce
Q 014172 366 ERRDFLVKSFGELEGVK 382 (429)
Q Consensus 366 ~~r~~l~~~L~~l~g~~ 382 (429)
++...+.+.|++.|.++
T Consensus 266 ~~a~~~a~~L~~~p~v~ 282 (384)
T PRK06434 266 KNGMELARFLRDSKKIS 282 (384)
T ss_pred HHHHHHHHHHHcCCCcc
Confidence 88888899998887663
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-14 Score=143.89 Aligned_cols=283 Identities=14% Similarity=0.133 Sum_probs=182.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++. +|++.+++.+.+.+....+ .....++...+++++.+.. ..+.+++++++++++.
T Consensus 34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~--~~~~~~~~~~la~~l~~~~----~~~~v~f~~SGseA~e 107 (395)
T PRK03715 34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPS--PAFYNEPMAKLAGLLTQHS----CFDKVFFANSGAEANE 107 (395)
T ss_pred CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhccccc--ccccCHHHHHHHHHHhhcc----CCCEEEEeCCcHHHHH
Confidence 577899998764 33443 6899999999886532222 2234678888999987542 2368999999999999
Q ss_pred HHHHHhc------CCC-CEEEEcCCCCCChHH-HHHHcCCEEEE---ecCCCCCCC----CCCHHHHHhhcccCCcEEEE
Q 014172 170 QAVLAVC------SPG-DEVIIPAPFWVSYPE-MARIADATPVI---LPTRISENF----LLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 170 ~~l~~l~------~~g-d~Vlv~~p~y~~~~~-~~~~~g~~~~~---v~~~~~~~~----~~d~e~l~~~l~~~~~~i~l 234 (429)
.+++... ++| ..|+..+.+|++... .+...|..... .|.. .++ ..|++.+++.+.+++.+|++
T Consensus 108 ~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~aavi~ 185 (395)
T PRK03715 108 GAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIASVEKLITDKTVAVML 185 (395)
T ss_pred HHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHHHHHHHcCCCceEEEE
Confidence 9988874 123 568888887776543 44444432111 1111 011 13789999999877888877
Q ss_pred cCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 235 CSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 235 ~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
...++..|... +.+.+++|.++|++| |+++|.||++.++...|... ....+.-..| +.+|+|.++ .|..+|.
T Consensus 186 Epv~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~tG~GRtG~~~-a~~~~gv~PD----i~t~gK~lg-~G~p~~a 258 (395)
T PRK03715 186 EPVQGEGGVIPATREFMQQLRALTKQH-GLLLIVDEVQTGCGRTGTLF-AYELSGIEPD----IMTLGKGIG-GGVPLAA 258 (395)
T ss_pred eCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCcchh-hHhhcCCCCc----eeeehhhhh-CCcceEE
Confidence 76677778765 688899999999999 99999999999753333211 1111111112 567899998 7899999
Q ss_pred EEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC---CCceeecCCceE
Q 014172 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAF 390 (429)
Q Consensus 314 v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l---~g~~~~~p~~~~ 390 (429)
+++++++.. +.......+++.++++.+++.+.|+. .++ +++.+..+++-+++.+.|+++ .++..++..| .
T Consensus 259 v~~~~~i~~-~~~~~~~~T~~g~pl~~aaala~L~~---l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG~G-l 331 (395)
T PRK03715 259 LLAKAEVAV-FEAGDQGGTYNGNPLMTAVGVAVISQ---LLA--PGFLEGVRARGEYLKEKLLELSEERGLEGERGEG-L 331 (395)
T ss_pred EEEcccccc-ccCCCcCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEEcce-e
Confidence 999888752 22111223445677888888888774 121 234555555666666666543 1344344444 4
Q ss_pred EEEEecC
Q 014172 391 YLFIDFS 397 (429)
Q Consensus 391 ~~~~~l~ 397 (429)
.+-+.+.
T Consensus 332 m~~i~l~ 338 (395)
T PRK03715 332 LRALLLG 338 (395)
T ss_pred EEEEEec
Confidence 4556664
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-14 Score=134.17 Aligned_cols=301 Identities=16% Similarity=0.121 Sum_probs=203.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC------CCC-CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF------TRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~------~~Y-~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|.|=.-++- +++.+.+++-..+.+.+ .+| +...-..++.+...++.++.||. +--||-..+|+.. .
T Consensus 27 ~~ieLIASEN~--~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga--~~anVQPhSGs~A-N 101 (413)
T COG0112 27 EHIELIASENF--TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGA--EYANVQPHSGSQA-N 101 (413)
T ss_pred hceeeeecccc--CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCC--CccccCCCCchHH-H
Confidence 57888887876 45677777777665421 233 33333455666666888888884 4457777777665 5
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHH---HHcC--CEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMA---RIAD--ATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~~---~~~g--~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG 242 (429)
..++.++++|||+|+-.+-.+.++...- ...| .+++.++++++ +..+|.|++++... .++|+|+.-.-. .-
T Consensus 102 ~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~kPK~ii~G~Sa--Y~ 178 (413)
T COG0112 102 QAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEVKPKLIIAGGSA--YS 178 (413)
T ss_pred HHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHhCCCEEEECccc--cc
Confidence 5589999999999998888777766433 2223 36667777654 46799999999875 489988752211 22
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH-HHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFV 321 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~~ 321 (429)
..++ ++++.++|++. |.+++.|-+|-...-.+..+++... ...|+.+|.+|+| +|.|-|.+++++ ++.
T Consensus 179 r~id---~~~~reIad~V-GA~L~~DmAHiaGLVA~G~~p~P~~-----~AdvVTtTTHKTl--rGPrGG~Il~~~eel~ 247 (413)
T COG0112 179 RPID---FKRFREIADEV-GAYLMVDMAHVAGLIAGGVHPNPLP-----HADVVTTTTHKTL--RGPRGGIILTNDEELA 247 (413)
T ss_pred cccC---HHHHHHHHHHh-CceEEehHHHHHHHHhcccCCCCCC-----ccceEeCCcccCC--CCCCceEEEeccHHHH
Confidence 3445 88899999999 9999999998743333323332222 2348999999998 799999999985 888
Q ss_pred HHHHHHhhcccCCCchHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecCCc
Q 014172 322 AACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTY 399 (429)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa-~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~~~ 399 (429)
+.+.+...+...+-+..-..|+ ..++... .+..+++..+...++.+.|.+.|.+. |++++. ..-+.-+.+++...
T Consensus 248 kkin~aVFPg~qggpl~HviAakaVa~~Ea--l~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~ 324 (413)
T COG0112 248 KKINSAVFPGLQGGPLMHVIAAKAVAFKEA--LEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSK 324 (413)
T ss_pred HHhhhhcCCccCCChHHHHHHHHHHHHHHH--cChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccC
Confidence 8888765555544333333332 2233321 23446778888888999999999987 888874 22245577888632
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+ -...-++++|++.||.++
T Consensus 325 -~----------~~Gk~ae~~L~~~~It~N 343 (413)
T COG0112 325 -G----------LTGKKAEAALERAGITVN 343 (413)
T ss_pred -C----------CCHHHHHHHHHHcCEeec
Confidence 1 245667778888899875
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=155.27 Aligned_cols=276 Identities=19% Similarity=0.203 Sum_probs=193.5
Q ss_pred CCCCCC---CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH----HHHHHHHHHhcCC-CC----EEEEcCCCCCChH
Q 014172 126 TRYTPN---AGTLELRSAICHKLKEENGLSYTPDQILVSNGAK----QSILQAVLAVCSP-GD----EVIIPAPFWVSYP 193 (429)
Q Consensus 126 ~~Y~~~---~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~----~al~~~l~~l~~~-gd----~Vlv~~p~y~~~~ 193 (429)
+-|.|. +|+.++...+.+++.+..|. +.|+++++++ +++.++++++.++ || .|+++...|.+..
T Consensus 555 hp~~p~~~~~g~~~~~~~~r~~la~i~g~----~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~ 630 (993)
T PLN02414 555 HPFAPVDQAQGYQEMFEDLGDLLCEITGF----DSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNP 630 (993)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCC----CeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCH
Confidence 445553 57766666666777666663 8999999988 8999999999866 88 8999999999999
Q ss_pred HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccC
Q 014172 194 EMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270 (429)
Q Consensus 194 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Dea 270 (429)
..+...|++++.++++. ++.+|+++|++++++ ++++|++++|+|-+|...+ +++|+++|+++ |.++++|.+
T Consensus 631 a~a~~~G~~vv~v~~d~--~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~---I~eI~~iah~~-Galv~vDgA 704 (993)
T PLN02414 631 ASAAMCGMKIVVVGTDA--KGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG---IDEICDIIHDN-GGQVYMDGA 704 (993)
T ss_pred HHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch---HHHHHHHHHHc-CCEEEEEec
Confidence 88888999999999864 346999999999984 6789999999999999988 99999999999 999999999
Q ss_pred CcccccCCCCCCccccCCCCCCceEEEeccChhcc----cccceeeEEEcCHHHHHHHHHHh-----------hcccCCC
Q 014172 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKIQ-----------SQFTSGA 335 (429)
Q Consensus 271 y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~----~~G~R~G~v~~~~~~~~~l~~~~-----------~~~~~~~ 335 (429)
+..-..+ ... +...+-+++++|.+|+|+ ..|..+|++.+.++++..+-... ...+.|.
T Consensus 705 q~~a~~~---l~~----p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt 777 (993)
T PLN02414 705 NMNAQVG---LTS----PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGT 777 (993)
T ss_pred CHHhccC---cCC----ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCC
Confidence 8541100 111 223466699999999775 34566999988887665542210 1111122
Q ss_pred ---ch----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEE--EEecCCccCCcccC
Q 014172 336 ---SS----ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL--FIDFSTYYGSEAEG 406 (429)
Q Consensus 336 ---~~----~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~--~~~l~~~~~~~~~~ 406 (429)
.. ....++..++.. .+.+.+++..+....+.+++.++|++..++.+..|.+.+|- .++++... ...|
T Consensus 778 ~~~a~~g~al~l~~A~~yi~~--lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~--~~~g 853 (993)
T PLN02414 778 ISAAPWGSALILPISYTYIAM--MGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFK--NTAG 853 (993)
T ss_pred ccchhhhhHHHHHHHHHHHHH--HCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccc--cccC
Confidence 11 222233333332 14677888888888899999999987445655555554321 23443210 0001
Q ss_pred CCCCCChHHHHHHHHHhCCee
Q 014172 407 FGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 407 ~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.+..+++++|++ +|+.
T Consensus 854 ----~~~~di~krL~d-~Gih 869 (993)
T PLN02414 854 ----IEPEDVAKRLMD-YGFH 869 (993)
T ss_pred ----CCHHHHHHHHHH-cCcE
Confidence 356899999994 4764
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=156.32 Aligned_cols=304 Identities=14% Similarity=0.105 Sum_probs=187.6
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC----CCCCCCC----CCHHHHHHHHHHHHhhcCCCCCCC--cEEEecChHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYTPNA----GTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQ 166 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~----~~Y~~~~----G~~~lr~~ia~~l~~~~g~~~~~~--~i~~t~G~~~ 166 (429)
.|.|+.+-..+.+|..+.+++.+.+.... ..|.... -..+.|+.+++++ | .+++ .|++|+|+|+
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~l----g--a~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYF----N--APPSDYACVFTSGATA 108 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHh----C--CCccceEEEEeCChHH
Confidence 68888887665555666666655543211 1111111 1235556666655 4 3443 5899999999
Q ss_pred HHHHHHHHh-cCCCCEEEEcCCCCCChHHH---HHHcCCEEEEecCCCC------CCCCCCH--HHHHhhc---------
Q 014172 167 SILQAVLAV-CSPGDEVIIPAPFWVSYPEM---ARIADATPVILPTRIS------ENFLLDP--KVLESKL--------- 225 (429)
Q Consensus 167 al~~~l~~l-~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~------~~~~~d~--e~l~~~l--------- 225 (429)
++++++..+ .++||+|++..-.|.+.... ++..|++++.++++.+ ....+++ +.+++.+
T Consensus 109 alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~ 188 (805)
T PLN02724 109 ALKLVGETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKRED 188 (805)
T ss_pred HHHHHHHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccc
Confidence 999998887 67899999987777765543 3456999999987521 1122333 5566653
Q ss_pred -ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhC----CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEecc
Q 014172 226 -TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH----PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (429)
Q Consensus 226 -~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~----~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (429)
.+++++|.+++.+|-||.++|.+.++++.+.++++ .++++++|.++.. +..+..+..+ +..+++.|+
T Consensus 189 ~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~piDv~~~----~~Dfl~~S~ 260 (805)
T PLN02724 189 DGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSPPDLSRY----PADFVVVSF 260 (805)
T ss_pred cCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCCCChhhc----CCCEEEEec
Confidence 24568999999999999999954333333322211 1368999999875 4434444433 455999999
Q ss_pred Chhcc-cccceeeEEEcCHHHHHHHHHHhh------------------------cccCCCchHHHHHHHHHHhcCCCChH
Q 014172 301 SKAFA-MTGWRLGYIAGPKHFVAACNKIQS------------------------QFTSGASSISQKAGVAALGLGYAGGE 355 (429)
Q Consensus 301 SK~~~-~~G~R~G~v~~~~~~~~~l~~~~~------------------------~~~~~~~~~~q~aa~~~l~~~~~~~~ 355 (429)
+|.+| ..| +|++++.+++.+.+..... ....+++..+..++.++++. ..+
T Consensus 261 HK~~GgP~G--~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~---l~~ 335 (805)
T PLN02724 261 YKIFGYPTG--LGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKL---LNR 335 (805)
T ss_pred ceeccCCCC--ceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHH---HHH
Confidence 99997 334 8999988877665542110 01123444455555556553 122
Q ss_pred -HHHHHHHHHHHHHHHHHHHhccCC------CceeecCC---------ceEEEEEecCCccCCcccCCCCCCChHHHHHH
Q 014172 356 -VVSKMVKAFRERRDFLVKSFGELE------GVKMSEPQ---------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419 (429)
Q Consensus 356 -~~~~~~~~~~~~r~~l~~~L~~l~------g~~~~~p~---------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 419 (429)
.++.+.++.++.++++.+.|++++ +++++.+. ++. +.+.+.+.-+ . .-....+.+
T Consensus 336 ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~i-vsFnv~~~~~-------~-~v~~~~v~~ 406 (805)
T PLN02724 336 LTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPI-VTFNLKRADG-------S-WVGHREVEK 406 (805)
T ss_pred hChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCE-EEEEEEcCCC-------C-EeCHHHHHH
Confidence 356677888888999999998875 47776442 344 4455543200 0 012344567
Q ss_pred HHHhCCeec
Q 014172 420 LLDKAQVLL 428 (429)
Q Consensus 420 Ll~~~gV~v 428 (429)
|++++||.+
T Consensus 407 l~~~~gI~v 415 (805)
T PLN02724 407 LASLSGIQL 415 (805)
T ss_pred HHHhcCcEE
Confidence 777788876
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-14 Score=142.24 Aligned_cols=317 Identities=16% Similarity=0.169 Sum_probs=186.6
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|.. .++- +|.+.+++.+++.+.. .++......+....+++.+.+..+.. ..+.|++++++++++.
T Consensus 40 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~-~~~~~~~~~~~~~~lae~L~~~~p~~-~~~~v~f~~SGseA~e 117 (445)
T PRK08593 40 DGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFI-HYTPAYMYHEPLVRLAKKLCELAPGD-FEKRVTFGLSGSDAND 117 (445)
T ss_pred CCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHHH
Confidence 5788999987753 3444 7999999999987532 12111122455566666666544311 1258999999999999
Q ss_pred HHHHHhcC-CC-CEEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCCCCC--CC-CC-------HHHHHh
Q 014172 170 QAVLAVCS-PG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISEN--FL-LD-------PKVLES 223 (429)
Q Consensus 170 ~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~~~--~~-~d-------~e~l~~ 223 (429)
.+++.... .| ..|+..+-+|.+....+. ..+. .++.+|...... +. .+ ++.+++
T Consensus 118 ~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (445)
T PRK08593 118 GIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKE 197 (445)
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHH
Confidence 99886431 23 568888887877543332 2221 123343321100 00 01 234444
Q ss_pred hcc-----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 224 KLT-----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 224 ~l~-----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
.+. +++.+|++...++..|.+ .+.+.+++|.++|++| |+++|.||++..|...|.. .....+.-..+ +
T Consensus 198 ~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tg~GrtG~~-~a~~~~gv~pD----i 271 (445)
T PRK08593 198 MFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREH-GILFAVDDIQQGLGRTGKW-SSISHFNITPD----L 271 (445)
T ss_pred HHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCchH-HHHHhcCCCCC----E
Confidence 332 356677776667777876 6888999999999999 9999999999876443321 11111111112 4
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.+|+|.++ .|+++|++++++++++.+......++++.++++++++.+.|+. .++ +++.+..+++-+++.+.|++
T Consensus 272 ~t~gK~l~-~G~p~gav~~~~~i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~---l~~--~~l~~~~~~~g~~l~~~L~~ 345 (445)
T PRK08593 272 MSFGKSLA-GGMPMSAIVGRKEIMESLEAPAHLFTTGANPVSCAAALATIDM---IED--ESLLQRSAEKGEYARKRFDQ 345 (445)
T ss_pred eeeccccc-CCcccEEEEEcHHHHhhhccCCCCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHH
Confidence 57999998 8899999999999998875433345667788888888888875 221 12333334444444444443
Q ss_pred ----CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 ----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 ----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+.-++..|-+ +.+.+...... ..........++..|+++ ||.+
T Consensus 346 l~~~~~~v~~vrG~Gl~-~gi~l~~~~~~---~~~~~~~~~~~~~~~~~~-Gv~~ 395 (445)
T PRK08593 346 WVSKYNFVGDVRGYGLS-IGIDIVSDKKL---KTRDNEAALKICNYCFEH-GVVI 395 (445)
T ss_pred HHhcCCcEEEEeccceE-EEEEEecCCCc---CCCcHHHHHHHHHHHHHC-CeEE
Confidence 4333333445544 44444210000 000001245688887775 8865
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-14 Score=142.28 Aligned_cols=290 Identities=15% Similarity=0.113 Sum_probs=176.3
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCc-EEEecChHHH
Q 014172 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQS 167 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~-i~~t~G~~~a 167 (429)
..|+..||+..|... ++- +|++.+++.+++.+....++ ..-..+.+..+|+.+.+..+....... ++++++++++
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~-~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA 114 (442)
T TIGR00709 36 VEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHT-LDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADA 114 (442)
T ss_pred CCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccc-cccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHH
Confidence 357889999888633 333 78999999998876322111 111245666777777665431101124 5566899999
Q ss_pred HHHHHHHhcC-CC-CEEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCCC--CC----CCH----HHHH
Q 014172 168 ILQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISEN--FL----LDP----KVLE 222 (429)
Q Consensus 168 l~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~--~~----~d~----e~l~ 222 (429)
.+.+++.... .| .+|+...-+|.+....+... |. .+..++...... +. .+. +.++
T Consensus 115 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T TIGR00709 115 VEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFE 194 (442)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHH
Confidence 9998887532 23 67888888888876444432 21 122333211000 00 011 1233
Q ss_pred hhcc------cCCcEEEEcCCC-CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceE
Q 014172 223 SKLT------EKSRLLILCSPS-NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295 (429)
Q Consensus 223 ~~l~------~~~~~i~l~~p~-NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i 295 (429)
+.+. .++.++++...+ |+...+++++.+++|.++|++| |+++|.||+|.+|.+.|. ......+....| +
T Consensus 195 ~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~-~~a~~~~gv~PD--i 270 (442)
T TIGR00709 195 NFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKH-DIKLILDEVQAGFGRSGT-MFAFEHAGIEPD--F 270 (442)
T ss_pred HHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCCCCc-hhHHHHcCCCCc--E
Confidence 3332 345666664444 4444568999999999999999 999999999998865553 222222221112 3
Q ss_pred EEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 014172 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 296 ~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (429)
++ ++|.++ .|+++|+++++++ ++.+.......+++.++++++++.+.|+. .++ +++.+..+++.+++.+.|
T Consensus 271 v~--~gK~l~-~G~Pigav~~~~~-~~~~~~~~~~~T~~gnpla~aaa~a~L~~---i~~--~~l~~~~~~~g~~l~~~L 341 (442)
T TIGR00709 271 VV--MSKAVG-GGLPLAVLLIAPE-FDAWQPAGHTGTFRGNQLAMVTGTEALNY---WKD--DNLAQNAQERGERITSFL 341 (442)
T ss_pred EE--Eccccc-CCcccEEEEEchH-HhccCCCcCCCCCCcCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHH
Confidence 33 899999 5999999999888 45443222345667899999999999974 121 244556666777777777
Q ss_pred ccC----CCceeecCCceEEEEEec
Q 014172 376 GEL----EGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 376 ~~l----~g~~~~~p~~~~~~~~~l 396 (429)
+++ +.+.-++..|-| +-+.+
T Consensus 342 ~~l~~~~~~v~~vrG~Gl~-~~ie~ 365 (442)
T TIGR00709 342 DDMIKEHPCIGNVRGRGLM-QGIMI 365 (442)
T ss_pred HHHHHhCCCeeeeeccceE-EEEEE
Confidence 653 323333455544 55555
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-17 Score=154.58 Aligned_cols=251 Identities=20% Similarity=0.227 Sum_probs=166.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCC
Q 014172 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~ 188 (429)
+.+++.+++.++.. +...|+.+....+|++.+++.+. .+..++++++|.+...+++++++|++.|++..++
T Consensus 7 ~~~~m~~a~~~a~~-gd~~Yg~D~~~~~l~~~i~~l~g--------~e~a~f~~sGT~An~~al~~~~~~~~~vi~~~~a 77 (290)
T PF01212_consen 7 PTPAMLEAMAAANV-GDDAYGEDPTTARLEERIAELFG--------KEAALFVPSGTMANQLALRAHLRPGESVICADTA 77 (290)
T ss_dssp S-HHEEHHHHHTTS-B-CCTTSSHHHHHHHHHHHHHHT--------SSEEEEESSHHHHHHHHHHHHHHTTEEEEEETTE
T ss_pred CCHHHHHHHHcccc-CCcccCCChhHHHHHHHHHHHcC--------CCEEEEeCCCChHHHHHHHHHHhcCCceeccccc
Confidence 56788888855543 33468877777788888888763 4566789999999999999999999999999987
Q ss_pred CCCh---HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCC-ccCCCCHHHHHHHHHHHH
Q 014172 189 WVSY---PEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNP-TGSVYPKNLLDEIARIVA 258 (429)
Q Consensus 189 y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NP-tG~~~~~~~l~~I~~~a~ 258 (429)
|... .......|++++.++... +..+|+++|++.+.. ++++|+|.+|+|. -|.+++.+++++|.++|+
T Consensus 78 Hi~~~E~ga~~~~~G~~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~ 155 (290)
T PF01212_consen 78 HIHFDETGAIEELSGAKLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAR 155 (290)
T ss_dssp HHHHSSTTHHHHHTTCEEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHH
T ss_pred eeeeeccchhhHhcCcEEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHH
Confidence 6532 234466999999998643 256999999999864 5789999999995 389999999999999999
Q ss_pred hCCCeEEEEccCCcc--cccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCc
Q 014172 259 KHPRLLVLSDEIYEH--IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336 (429)
Q Consensus 259 ~~~~i~vi~Deay~~--~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~ 336 (429)
+| |+.++.|.+--. ..+.+ .++..+. ..-+++..|++|.+++++ -+.+++++++++....+.........
T Consensus 156 ~~-gl~lhmDGARl~~a~~~~~---~~~~e~~--~~~D~v~~~~tK~~g~~~--Gavl~~~~~~i~~~~~~~k~~gg~~~ 227 (290)
T PF01212_consen 156 EH-GLPLHMDGARLANAAAALG---VSLAEIA--AGADSVSFGGTKNGGAPG--GAVLAGNKEFIAKARRQRKRLGGGMR 227 (290)
T ss_dssp HH-T-EEEEEETTHHHHHCHHH---HHHHHHH--TTSSEEEEETTSTT-SSS--EEEEEESHHHHHHHHHHHHHHTHHHH
T ss_pred hC-ceEEEEehhhHHHhhhccc---ccHHHHh--hhCCEEEEEEEccccccc--ceEEEechHHHHHHHHHHHHhccCee
Confidence 99 999999988431 11111 1222222 233477888999998765 36677899877665554433322111
Q ss_pred --hHHHH------HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 337 --SISQK------AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 337 --~~~q~------aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
.+... ++...++ .|+ ....+..++.+.+.+.|+.+ |..+..|
T Consensus 228 ~~G~~~a~~~~~~~~l~~l~------~~~-~~~~~~~~~A~~La~~l~~~-~~~~~~~ 277 (290)
T PF01212_consen 228 QAGVLAAAELYQFAALRALE------LWL-ERARHANAMAKRLAAGLEAL-GGVLPRP 277 (290)
T ss_dssp HTTHHHHHHHHHHHHHCHEE------CSH-HHHHCHHHHHHCHHHCHHEE-CEEEETT
T ss_pred ecceeeeechhhHHHHHHHH------hhH-HHHHHHHHHHHHHHHHHHHC-CCcccCC
Confidence 11111 2222222 233 34445556677888899888 4444433
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-14 Score=141.94 Aligned_cols=307 Identities=15% Similarity=0.133 Sum_probs=184.9
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..| ...++- +|.+.+++.+.+.+.. +.......+.+..+|+.+.+.... ..+.++++++++++++
T Consensus 73 dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~--~~~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~SGsEA~e 148 (442)
T TIGR03372 73 QGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQP--LHSQELLDPLRALLAKTLAALTPG--KLKYSFFCNSGTESVE 148 (442)
T ss_pred CCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCC--CcccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCchHHHH
Confidence 57789999888 445554 7889999999887532 111112245566677776654331 2257999999999999
Q ss_pred HHHHHhcC----CC-CEEEEcCCCCCChHHHHHHcCCEEE----EecCCCCCC--CCCCHHHHHhhcc------cCCcEE
Q 014172 170 QAVLAVCS----PG-DEVIIPAPFWVSYPEMARIADATPV----ILPTRISEN--FLLDPKVLESKLT------EKSRLL 232 (429)
Q Consensus 170 ~~l~~l~~----~g-d~Vlv~~p~y~~~~~~~~~~g~~~~----~v~~~~~~~--~~~d~e~l~~~l~------~~~~~i 232 (429)
.+++.... .| ..|+....+|.+....+.....+.. +.|..+.-. --.|.+.+++.++ .+..+|
T Consensus 149 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAav 228 (442)
T TIGR03372 149 AALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAI 228 (442)
T ss_pred HHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 99886532 24 5788888888876544333221110 111110000 0026777776663 234566
Q ss_pred EEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ce
Q 014172 233 ILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WR 310 (429)
Q Consensus 233 ~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R 310 (429)
++...+...|... +++.+++|.++|++| |+++|.||++.+|-..|. ...+..+.-..| +-+|+|.+| .| ..
T Consensus 229 IvEpv~g~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~-~~a~e~~gv~PD----ivt~gK~lg-~G~~P 301 (442)
T TIGR03372 229 ILEPIQGEGGVILPPEGYLPAVRALCDEF-GALLILDEVQTGMGRTGK-MFACEHEGVQPD----ILCLAKALG-GGVMP 301 (442)
T ss_pred EEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeecccCCCcccc-chhhhhcCCCCC----eeeehhhhc-CCccc
Confidence 6655566667655 577899999999999 999999999987533332 111111211112 345999998 78 68
Q ss_pred eeEEEcCHHHHHHHHHH--hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CC-Ccee
Q 014172 311 LGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LE-GVKM 383 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l~-g~~~ 383 (429)
+|.+++.+++.+.+... ....+++.++++.+++.+.|+. .++ +++.+..++.-+++.+.|++ .| .+.-
T Consensus 302 igavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~---i~~--~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~ 376 (442)
T TIGR03372 302 IGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINE---LLE--KNLPAQAAIKGDFLLDGFQQLAAEYPDLIIE 376 (442)
T ss_pred ceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 99999999988877421 2234555678888888888874 111 11223333333444444433 43 2333
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.. |.++-+.+... .....+++.|+++ ||.+
T Consensus 377 vRG~-Gl~~giel~~~-----------~~~~~i~~~l~~~-Gvl~ 408 (442)
T TIGR03372 377 ARGK-GLLMAIEFRDN-----------EIGYAFAKELFQQ-NILV 408 (442)
T ss_pred Eecc-eEEEEEEeCCh-----------HHHHHHHHHHHHC-CcEE
Confidence 3444 44466766431 1346788888876 8875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-14 Score=143.34 Aligned_cols=288 Identities=15% Similarity=0.152 Sum_probs=179.3
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++- +|.+.+++.+.+.+..+ +.......+....+++.+.+..+. ..+.|+++++++++++
T Consensus 50 dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseAve 126 (460)
T PRK06541 50 RGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAF-FPLWSYAHPPAIELAERLAALAPG--DLNRVFFTTGGSEAVE 126 (460)
T ss_pred CCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcC-ccccccCCHHHHHHHHHHHHhCCC--CcCEEEEcCCcHHHHH
Confidence 578899998885 33444 78999999999875321 111112234555666666654321 2368999999999999
Q ss_pred HHHHHhcC-------C-CCEEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCC---CCCCC--------
Q 014172 170 QAVLAVCS-------P-GDEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE---NFLLD-------- 217 (429)
Q Consensus 170 ~~l~~l~~-------~-gd~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~---~~~~d-------- 217 (429)
.+++.... + ..+|+...-+|.+....+... |. .+..+|..... .+.-+
T Consensus 127 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (460)
T PRK06541 127 SAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWA 206 (460)
T ss_pred HHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHH
Confidence 98886531 1 267888888888765433321 11 12223321100 01112
Q ss_pred HHHHHhhcc---cCCcEEEEcCC-CCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT---EKSRLLILCSP-SNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~---~~~~~i~l~~p-~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
++.+++.+. ++..+.+|..| ++++|.+.+ .+.+++|.++|++| |+++|.||+|..|-..|.. .....+.-..|
T Consensus 207 ~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tGfGR~G~~-~a~~~~gv~PD 284 (460)
T PRK06541 207 ADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRY-DVLLVSDEVICAFGRLGEM-FGCERFGYVPD 284 (460)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCchh-hhhhhcCCCCC
Confidence 356777764 24445555556 889998765 88899999999999 9999999999765222221 11111111112
Q ss_pred ceEEEeccChhcccccc-eeeEEEcCHHHHHHHHHHh----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~~----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
+.+|+|.++ .|+ ++|++++++++++.+.... ...+++.++++.+++.+.|+. .+ -+++.+..+++
T Consensus 285 ----ivt~gK~l~-~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~---l~--~~~~~~~~~~~ 354 (460)
T PRK06541 285 ----IITCAKGIT-SGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDI---FE--REGLLDHVRDN 354 (460)
T ss_pred ----EEEeccccc-CCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHH---HH--hccHHHHHHHH
Confidence 335999999 897 9999999999988875421 123555677888888777764 11 12456777788
Q ss_pred HHHHHHHhccCCC---ceeecCCceEEEEEec
Q 014172 368 RDFLVKSFGELEG---VKMSEPQGAFYLFIDF 396 (429)
Q Consensus 368 r~~l~~~L~~l~g---~~~~~p~~~~~~~~~l 396 (429)
.+++.+.|+++.. +..+...|.|+ -+.+
T Consensus 355 g~~l~~~L~~l~~~~~v~~vrg~Gl~~-~ie~ 385 (460)
T PRK06541 355 EPAFRATLEKLLDLPIVGDVRGDGYFY-GIEL 385 (460)
T ss_pred HHHHHHHHHHhhcCCCeEEEEecceEE-EEEE
Confidence 8888888877522 22345666554 4444
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-14 Score=140.59 Aligned_cols=277 Identities=16% Similarity=0.142 Sum_probs=197.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCC--------C-
Q 014172 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP--------G- 179 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~--------g- 179 (429)
+++...+++...+.++.....-.++..++.+.+..++.+.++.+ ..-.=.+|.|+|+++.+++++..+. +
T Consensus 74 ~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~-~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~ 152 (460)
T COG0076 74 VPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAP-EEASGTFTSGGTEANLLALLAARERWRKRALAESG 152 (460)
T ss_pred CHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCC-CCCceEEEcChHHHHHHHHHHHHHHHHHHhhhccc
Confidence 46778888888887655444344578999999999999999864 3345689999999999887775211 1
Q ss_pred -----CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcE--EEEcCCCCCccCCCCHHHHHH
Q 014172 180 -----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL--LILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 180 -----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~--i~l~~p~NPtG~~~~~~~l~~ 252 (429)
-+|+++.-.|.+....++.+|.+...+++.+. ++.+|+++|++++++.+.. |+-+.++-+||.+=+ +++
T Consensus 153 ~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGtT~~G~iDd---i~~ 228 (460)
T COG0076 153 KPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGTTDTGSIDD---IEE 228 (460)
T ss_pred ccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecCCCCCccCC---HHH
Confidence 16999999999999999999999999999875 6789999999999887665 777888899999988 999
Q ss_pred HHHHHHhCCCeEEEEccCCccccc--CCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH-HHHHHHHHhh
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQS 329 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-~~~~l~~~~~ 329 (429)
|.++|+++ ++|+++|.||+++.. ..........+ ....-+..+++|.+. .-..+||++..++ -.........
T Consensus 229 ia~ia~~~-~i~lHVDAA~GG~~~pf~~~~~~~~f~l---~~vdSIt~d~HK~g~-aP~~~G~il~rd~e~l~~~~~~~~ 303 (460)
T COG0076 229 LADIAEEY-GIWLHVDAAFGGFLLPFLEPDGRWDFGL---EGVDSITVDGHKYGL-APIGCGVVLFRDEEALRRILIFAD 303 (460)
T ss_pred HHHHHHHc-CCcEEEEccccceeecccCccchhhcCC---CCceEEEECcccccC-CCCCceEEEEECHHHhhhhhhccc
Confidence 99999999 999999999998653 22211111111 233346778999764 7788999998654 3333322211
Q ss_pred cccC---------CCchHH-H-HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecC
Q 014172 330 QFTS---------GASSIS-Q-KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (429)
Q Consensus 330 ~~~~---------~~~~~~-q-~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~ 397 (429)
++.. ..+..+ + .++...+.. .+.+.+.++.++..+..+++.+.|++++.+++.. |..+. +.++.+
T Consensus 304 ~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~--lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~-V~fr~~ 380 (460)
T COG0076 304 YYLPGGGIPNFTILGSRPGRQALALYANLRR--LGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPI-VAFRLK 380 (460)
T ss_pred ccCCCCCcCceeEeeccchHHHHHHHHHHHH--hCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccce-EEEEcC
Confidence 1111 112222 2 222222222 1467788888888899999999999996588775 54444 667775
Q ss_pred C
Q 014172 398 T 398 (429)
Q Consensus 398 ~ 398 (429)
+
T Consensus 381 ~ 381 (460)
T COG0076 381 D 381 (460)
T ss_pred C
Confidence 4
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.6e-14 Score=136.90 Aligned_cols=262 Identities=12% Similarity=0.141 Sum_probs=182.1
Q ss_pred ChHHHHHHHHHHHHc----CCCCCCCCCCCH---HHHHHHHHHHHhhcCCCCCCCcEEEecC-hHHHHHHHHHHhcCCCC
Q 014172 109 TPVLIAEAGINAIRE----GFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNG-AKQSILQAVLAVCSPGD 180 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~----~~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~i~~t~G-~~~al~~~l~~l~~~gd 180 (429)
.|..+++++.+.+.+ +...|......+ ++.+.+.+.+++.++.+ +..+|++++| +|++++.++..++.+||
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgT~a~ea~~~nl~~~~~ 81 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIP-DNYEVLFLQGGATGQFAAVPLNLLAEGK 81 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCCCCC
Confidence 578899999988763 222333333334 66666777777777731 2357888877 99999999999999999
Q ss_pred EEEEcCCCCCCh--HHHHHHcCCEEEEecCCCC--CCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHH
Q 014172 181 EVIIPAPFWVSY--PEMARIADATPVILPTRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (429)
Q Consensus 181 ~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~--~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~ 256 (429)
++++..-+..+. .+.++..|+ ++.+...+. .+..+++++++ +++++++|.+++-.+.||+..+ ++
T Consensus 82 ~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~--------~l 150 (349)
T TIGR01364 82 VADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR--------EL 150 (349)
T ss_pred eEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc--------ee
Confidence 988776655543 467888999 777765422 22245667665 3568999999999999999876 56
Q ss_pred HHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH---------
Q 014172 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI--------- 327 (429)
Q Consensus 257 a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~--------- 327 (429)
++.+ ++++++|.+.+. +..+..+.. ++ +++.|..|.+|.+| +|+++.++++++.+...
T Consensus 151 ~~~~-~~l~iVDavss~----g~~~id~~~----~d--~~~~ssqK~lgP~G--lg~l~~s~~~~~~~~~~~~~~~~~~~ 217 (349)
T TIGR01364 151 PDVK-NAPLVADMSSNI----LSRPIDVSK----FG--LIYAGAQKNIGPAG--LTVVIVRKDLLGRASRITPSMLNYKI 217 (349)
T ss_pred cccC-CCeEEEEccccc----cCccCCHHH----cc--EEEEecccccCCCc--eEEEEECHHHHhhcccCCCCcchHHH
Confidence 6678 899999999876 333333332 23 88999999998776 89999999887655221
Q ss_pred -h--hcccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCceeec--C--CceEEEEEecC
Q 014172 328 -Q--SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYLFIDFS 397 (429)
Q Consensus 328 -~--~~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~--p--~~~~~~~~~l~ 397 (429)
. .....+++.....++.++|+.- .++ .++++.+++++..+++++.|++++|+.... + ..+..+.+.++
T Consensus 218 ~~~~~~~~~Tp~~~~i~al~~al~~l--~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~ 293 (349)
T TIGR01364 218 HAENDSMYNTPPTFAIYVSGLVFKWL--KEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLG 293 (349)
T ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecC
Confidence 1 1122356677777777777741 133 488999999999999999999997764432 1 23233455665
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-14 Score=135.83 Aligned_cols=311 Identities=16% Similarity=0.208 Sum_probs=198.0
Q ss_pred cCCCeEEcCCCCCCCC--C-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDFD--T-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~--~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..+.-+.- - +|.|.+++.++++++. .|+.+ .++.-.+|+.+.+..+ ..+.|-+++++|+|..
T Consensus 51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~-~fg~P---te~Ei~~Aell~~~~p---~~e~vrfvnSGTEAtm 123 (432)
T COG0001 51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGL-SFGAP---TELEVELAELLIERVP---SIEKVRFVNSGTEATM 123 (432)
T ss_pred CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcC-CCCCC---CHHHHHHHHHHHHhcC---cccEEEEecchhHHHH
Confidence 5778999988885433 2 6889999999998874 45432 3566667777766544 4489999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHH-cC--C-----------------EEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI-AD--A-----------------TPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~g--~-----------------~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+++.-.. .-|.|+..+-+|.++.+.+.. +| . .++.+|. + |++.++++++.
T Consensus 124 sAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~y---N----D~~al~~~~~~ 196 (432)
T COG0001 124 SAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPY---N----DLEALEEAFEE 196 (432)
T ss_pred HHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecC---C----CHHHHHHHHHH
Confidence 88887532 338899999999988765543 22 1 1233332 1 89999998875
Q ss_pred ---CCcEEEE-cCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 228 ---KSRLLIL-CSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 228 ---~~~~i~l-~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
+..+|++ +-..| .|.+.| ++.++.|.++|++| ++++|.||+...|...-........+..+ +.+|.|
T Consensus 197 ~g~~IAaVIvEPv~gn-~g~i~p~~~Fl~~Lr~lt~e~-G~lLI~DEViTGFR~~~gGaq~~~gi~PD------lttlGK 268 (432)
T COG0001 197 YGDDIAAVIVEPVAGN-MGVVPPEPGFLEGLRELTEEH-GALLIFDEVITGFRVALGGAQGYYGVEPD------LTTLGK 268 (432)
T ss_pred cCCcEEEEEeccccCC-CCCCCCCHHHHHHHHHHHHHc-CcEEEEecchhhcccCCcccccccCcCcc------hhhhhh
Confidence 4445555 33366 566555 45699999999999 99999999998876542233333333322 778999
Q ss_pred hcccccceeeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
..| .|+.+|.+.+..++++.+... -+..+++.++++..|..+.|+.-...+...+++.+.-.+.++-+.+.+.+.
T Consensus 269 iIG-GGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~- 346 (432)
T COG0001 269 IIG-GGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERH- 346 (432)
T ss_pred hhc-CCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999 999999999999999977643 334456678888888888887511101123333333334444444444444
Q ss_pred Cceee-cCCceEEEE-EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 GVKMS-EPQGAFYLF-IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~-~p~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+.+. ...+++|-+ +.-.+..............-..|...|+++ ||.+
T Consensus 347 g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l 396 (432)
T COG0001 347 GIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYL 396 (432)
T ss_pred CCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-Cccc
Confidence 65553 244555433 322111000000001111245677777776 8876
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.9e-14 Score=134.47 Aligned_cols=216 Identities=16% Similarity=0.129 Sum_probs=160.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEEec
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILP 207 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~ 207 (429)
+-...|.+.+++.. ....+++.+++..++..++..++..|+.|++....|.+....++ .+|++...++
T Consensus 77 Pt~~~le~~iaal~--------ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd 148 (409)
T KOG0053|consen 77 PTRDVLESGIAALE--------GAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVD 148 (409)
T ss_pred CchHHHHHHHHHHh--------CCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeec
Confidence 34456777777664 33468899999999999999999999999999999998765544 6788888887
Q ss_pred CCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 208 ~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
++ +++.+++++++++++||+.+|.||+..+.+ +++|.++|+++ |++|++|+.+....+- ....
T Consensus 149 ~~-------~~~~~~~~i~~~t~~V~~ESPsNPll~v~D---I~~l~~la~~~-g~~vvVDnTf~~p~~~-----~pL~- 211 (409)
T KOG0053|consen 149 VD-------DLKKILKAIKENTKAVFLESPSNPLLKVPD---IEKLARLAHKY-GFLVVVDNTFGSPYNQ-----DPLP- 211 (409)
T ss_pred hh-------hHHHHHHhhccCceEEEEECCCCCcccccc---HHHHHHHHhhC-CCEEEEeCCcCccccc-----Chhh-
Confidence 52 788999999999999999999999999999 99999999999 9999999998864221 1122
Q ss_pred CCCCCceEEEeccChhccccc-ceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 288 PGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
.+-+|++.|.+|.++-.+ .=.|.++.+ +++.+.+.........+++++...-...-+.. +.-+.++..
T Consensus 212 ---lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglkt-------l~lRi~~~~ 281 (409)
T KOG0053|consen 212 ---LGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLKT-------LHLRINKHS 281 (409)
T ss_pred ---cCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcch-------hhhhHHHHH
Confidence 245599999999996333 334666675 88999998888878888888765544433332 223334444
Q ss_pred HHHHHHHHHhccCCCce
Q 014172 366 ERRDFLVKSFGELEGVK 382 (429)
Q Consensus 366 ~~r~~l~~~L~~l~g~~ 382 (429)
++...+...|++.|.++
T Consensus 282 ena~~~A~~Le~~~~v~ 298 (409)
T KOG0053|consen 282 ENALKIALLLEAHPKVK 298 (409)
T ss_pred HHHHHHHHHhhhCCcee
Confidence 45445555565554444
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-14 Score=140.82 Aligned_cols=250 Identities=13% Similarity=0.154 Sum_probs=163.7
Q ss_pred CCCChHHHHHHHHHHHHcC----CCCCCCCCCCH---HHHHHHHHHHHhhcCCCCCCCcEEEecC-hHHHHHHHHHHhcC
Q 014172 106 DFDTPVLIAEAGINAIREG----FTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNG-AKQSILQAVLAVCS 177 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~----~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~i~~t~G-~~~al~~~l~~l~~ 177 (429)
+...|+.|++++.+.+.+. ...|....... ++.+.+.+.+.+.+|.+ ++++|++|+| +|++++.++..++.
T Consensus 7 p~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~-~~~~vvf~~gs~T~a~~~~~~~l~~ 85 (355)
T cd00611 7 PAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIP-DNYKVLFLQGGATGQFAAVPLNLLG 85 (355)
T ss_pred CCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCCchHHHHHHHHhcCC
Confidence 3446899999999887431 11122221112 33334444444445531 4578999988 99999999999987
Q ss_pred ---CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCC-HHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 178 ---PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 178 ---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d-~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+||.|++ .+......+.++..|++++.++.+..+++ .+ ++..+..+++++++|.+++..|.||..++
T Consensus 86 ~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~------- 156 (355)
T cd00611 86 DKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLAPDAAYVHYCSNETIHGVEFD------- 156 (355)
T ss_pred CCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-------
Confidence 4555544 22222234477888999999987533222 13 33333446778999999999999999754
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH------
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI------ 327 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~------ 327 (429)
++++.| |+++++|.+.+. |..+..+..+ + +.+.|..|.+|.+| +|++++++++.+.+...
T Consensus 157 -~i~~~~-g~~~~VDa~qs~----g~~~idv~~~----~--~~~ss~~K~lGP~G--~g~l~~~~~~~~~~~~~~~~~~~ 222 (355)
T cd00611 157 -EVPDTG-GVPLVADMSSNI----LSRPIDVSKF----G--VIYAGAQKNLGPAG--VTVVIVRKDLLGKARKITPSMLN 222 (355)
T ss_pred -eecccC-CCeEEEEccccc----cCCCCCHHHh----C--EEEeecccccCCCc--eEEEEECHHHHhhcccCCCCccc
Confidence 344558 999999999886 3333333332 2 45666899998666 89999998887654321
Q ss_pred -----h-hcccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCc
Q 014172 328 -----Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGV 381 (429)
Q Consensus 328 -----~-~~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~ 381 (429)
. .....+++.....++.++++.- .+. .++.+.+++++.++++++.|+++||+
T Consensus 223 ~~~~~~~~~~~~Tpn~~~i~~L~aal~~l--~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl 281 (355)
T cd00611 223 YKTHADNNSLYNTPPTFAIYMMGLVLKWL--KEQGGVEAMEKRNRQKAQLLYDTIDNSNGF 281 (355)
T ss_pred HHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 0 1112345666667777777641 123 47888999999999999999999886
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=137.43 Aligned_cols=306 Identities=15% Similarity=0.166 Sum_probs=187.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|. ..++- +|++.+++.+.+.+..+ + ......+.+..+++.+.+.... ..+.+++++++++++.
T Consensus 80 dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~-~-~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGsEAve 155 (459)
T PRK11522 80 QGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPL-H-SQELLDPLRAMLAKTLAALTPG--KLKYSFFCNSGTESVE 155 (459)
T ss_pred CCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcc-c-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCchHHHH
Confidence 577899998884 44554 78999999998875321 1 1112245666677776654331 2368999999999999
Q ss_pred HHHHHhcC----CC-CEEEEcCCCCCChHHHHHHc-CCEEEE---ecCCCCC---CCCCCHHHHHhhcc------cCCcE
Q 014172 170 QAVLAVCS----PG-DEVIIPAPFWVSYPEMARIA-DATPVI---LPTRISE---NFLLDPKVLESKLT------EKSRL 231 (429)
Q Consensus 170 ~~l~~l~~----~g-d~Vlv~~p~y~~~~~~~~~~-g~~~~~---v~~~~~~---~~~~d~e~l~~~l~------~~~~~ 231 (429)
.+++.... +| ..|+...-+|.+....+... |-.... .|..+.- .+ .|.+.+++.+. +++.+
T Consensus 156 ~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~iAa 234 (459)
T PRK11522 156 AALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNIEAMRTALSECKKTGDDVAA 234 (459)
T ss_pred HHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCHHHHHHHHHHhhccCCcEEE
Confidence 99886531 23 46888888888765443332 211111 1111100 01 26778887774 23445
Q ss_pred EEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-c
Q 014172 232 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-W 309 (429)
Q Consensus 232 i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~ 309 (429)
|++...+...|... |.+.++++.++|++| |+++|.||++.+|-..|.. .....+.-..| +-+|+|.+| .| .
T Consensus 235 vIvEpv~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~-~a~e~~gv~PD----ivt~gK~lg-gG~~ 307 (459)
T PRK11522 235 VILEPIQGEGGVILPPEGYLTAVRKLCDEF-GALLILDEVQTGMGRTGKM-FACEHENVQPD----ILCLAKALG-GGVM 307 (459)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHc-CCEEEeccceecCCccchh-hhhhccCCCCC----EEEechhhh-CCCc
Confidence 66655566677754 666899999999999 9999999999875333321 11111211122 347899998 77 6
Q ss_pred eeeEEEcCHHHHHHHHH--HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CC-ce
Q 014172 310 RLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VK 382 (429)
Q Consensus 310 R~G~v~~~~~~~~~l~~--~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g-~~ 382 (429)
.+|.+++.+++.+.+.. .....+++.++++.+++.+.|+. .++ +++.+..+++-+++.+.|+++ |. +.
T Consensus 308 Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~---i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~ 382 (459)
T PRK11522 308 PIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINV---LLE--QNLPAQAEQKGDYLLDGFRQLAREYPDLVQ 382 (459)
T ss_pred cceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHH---Hhc--chHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 89999999998887642 12234455688888888888875 121 134445555555666665543 32 22
Q ss_pred eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 383 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
-++..| .++-+.+... .....+++.|+++ ||.+
T Consensus 383 ~VrG~G-l~~giel~~~-----------~~~~~i~~~l~~~-Gvl~ 415 (459)
T PRK11522 383 EARGKG-MLMAIEFVDN-----------EIGYNFASEMFRQ-RVLV 415 (459)
T ss_pred eEEece-eEEEEEecCc-----------hHHHHHHHHHHHC-CeEE
Confidence 233444 4466666431 1256788888875 8875
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-13 Score=137.95 Aligned_cols=258 Identities=12% Similarity=0.152 Sum_probs=166.8
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|... ++- +|++.+++.+.+.+.. .++. ..++...+|+.+.+... ..+.+.++++++++..
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~-~~~~---~~~~~~~lAe~l~~~~p---~~~~v~f~~SGsEA~e 169 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT-SFGA---PCLLENVLAEMVIDAVP---SVEMVRFVNSGTEACM 169 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC-CCCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCChHHHHH
Confidence 47788998877633 343 7899999999987653 2322 23566667777766543 2479999999999999
Q ss_pred HHHHHhcC-CC-CEEEEcCCCCCChHHHHH-Hc--CC-----------------EEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 170 QAVLAVCS-PG-DEVIIPAPFWVSYPEMAR-IA--DA-----------------TPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 170 ~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~-~~--g~-----------------~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+++.... .| ++|+...-+|.+....+. .. |. .++.+| ++ |++.+++.+..
T Consensus 170 ~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~n-d~~~l~~~l~~ 242 (474)
T PLN02482 170 GVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAP------YN-DLEAVKKLFEA 242 (474)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEec------CC-ChHHHHHHHHh
Confidence 99887532 23 678888888888543211 10 10 011111 11 78888888752
Q ss_pred ---CCcEEEEcCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 228 ---KSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 228 ---~~~~i~l~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
+..+|++.......|.+.+ ++.+++|.++|++| |+++|.||++.++ ..+.. .....+.-..| +.+|+|.
T Consensus 243 ~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~-g~lLI~DEV~tGf-R~g~~-ga~~~~gv~PD----i~t~gK~ 315 (474)
T PLN02482 243 NKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKEN-GALLVFDEVMTGF-RIAYG-GAQEYFGITPD----LTTLGKV 315 (474)
T ss_pred CCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCe-ecCcc-hHhHHhCCCCC----EEEecch
Confidence 4556666555666787665 67899999999999 9999999999876 33321 11111111112 4578999
Q ss_pred cccccceeeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
+| .|+.+|.+++++++++.+... ....+++.++++..++.+.|+. .++ .+..+...++-+++.+.|++
T Consensus 316 lg-gG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~---l~~--~~~~~~~~~~g~~l~~~L~~ 386 (474)
T PLN02482 316 IG-GGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR---LQQ--PGTYEYLDKITKKLIQGILE 386 (474)
T ss_pred hh-CCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHH---Hhc--cCHHHHHHHHHHHHHHHHHH
Confidence 99 899999999999999887532 1223445678888888887775 111 12344444455555555544
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-15 Score=136.80 Aligned_cols=291 Identities=20% Similarity=0.282 Sum_probs=164.1
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHH-HcCCC--CCCC--C---CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAI-REGFT--RYTP--N---AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~-~~~~~--~Y~~--~---~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
+|+..|+|.+--|-....+...++ -.+++ .|.. . .-.++|.+.|.++.+...+...+...|++++|+|+.++
T Consensus 1 ~d~d~GDP~~~E~yW~~~~~~~avvi~gw~rMSY~~~~~~~~f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~ 80 (363)
T PF04864_consen 1 ADADSGDPTFFEPYWRRHGDSSAVVIPGWHRMSYFSDSSNGWFISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFN 80 (363)
T ss_dssp EEESS---GGGHHHHCCTHHHH-EEE-TTTT-SSSS-TTSSTTS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHH
T ss_pred CCcCCCCchhhHHHHHhcCcceeEEEeccccceeEEecCCceeccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHH
Confidence 567788876533333222222221 12332 2332 1 22478999999888776666566679999999999999
Q ss_pred HHHHHhcCC----C--CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEE-EEcCCCCCcc
Q 014172 170 QAVLAVCSP----G--DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL-ILCSPSNPTG 242 (429)
Q Consensus 170 ~~l~~l~~~----g--d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i-~l~~p~NPtG 242 (429)
+++.+|... + -.|+...|.|+.|........-......-+. ..|. +- +.....| ++++||||.|
T Consensus 81 AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~Gda-~~~~-~~-------~~~~~~IElVTSPNNPDG 151 (363)
T PF04864_consen 81 AALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAGDA-SNFK-NS-------DNPSPYIELVTSPNNPDG 151 (363)
T ss_dssp HHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEEEC-CCGT-T--------S-CCGEEEEEESS-TTT-
T ss_pred HHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCccccccH-Hhhc-cC-------CCCCCeEEEEeCCCCCcc
Confidence 999998533 1 3799999999999988765433221221111 1121 00 1123344 7899999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFV 321 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~ 321 (429)
.. .+.++ +.- +..+|.|-+|..=.|.+ + ....+..|.+.|+||.-|-+|.|+||++.. +++.
T Consensus 152 ~l-----r~~V~---~g~-~~k~I~D~AYYWPhyTp-----I---~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va 214 (363)
T PF04864_consen 152 QL-----REAVL---NGS-SGKVIHDLAYYWPHYTP-----I---TAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEVA 214 (363)
T ss_dssp ----------SS---TTT-EEEEEEE-TT-STTTS-----------S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHHH
T ss_pred cc-----cchhc---CCC-Ccceeeeeeeecccccc-----c---CCCCCCceEEEEEecccCccccccceeeecCHHHH
Confidence 87 33343 333 77889999998733332 1 112466699999999999999999998875 5678
Q ss_pred HHHHHHhhcccCCCchHHHHHHHHHHhc---CCCC----hHHHHHHHHHHHHHHHHHHHHhccCCCceee--c-------
Q 014172 322 AACNKIQSQFTSGASSISQKAGVAALGL---GYAG----GEVVSKMVKAFRERRDFLVKSFGELEGVKMS--E------- 385 (429)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa~~~l~~---~~~~----~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~--~------- 385 (429)
+.+.+.....+.+++.=+|.=++..|+. +... .+.+.--++.+++|...|.+.++.-.-+.+. .
T Consensus 215 ~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff 294 (363)
T PF04864_consen 215 KKMTKYMELNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFF 294 (363)
T ss_dssp HHHHHHHHHHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTT
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhcccc
Confidence 8888887778888999999877777752 1100 1345556777888888888888764223222 1
Q ss_pred ----CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 386 ----PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 386 ----p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
..+.-|.|+++... +.+=|..+|+++||.
T Consensus 295 ~~~~~psPafAWlkCe~e-------------ed~DC~~~l~~~~I~ 327 (363)
T PF04864_consen 295 KRVREPSPAFAWLKCERE-------------EDEDCYAVLREAKII 327 (363)
T ss_dssp TCEEE---SEEEEEESSC-------------GGSSHHHHHHCTTEE
T ss_pred ccccCCCCCeEEEecCCc-------------ccccHHHHHHhCCcc
Confidence 12344699999752 223344555666764
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-13 Score=134.10 Aligned_cols=315 Identities=14% Similarity=0.146 Sum_probs=195.8
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+..|||..|... ++- +|.|++++.+.+.... +.+.. ...+-...+++.|.+....+ ..+.+++++++++++
T Consensus 54 dG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~~--~~~e~~v~~ae~L~~~~p~~-~~~~~~f~~sGaeA~ 130 (447)
T COG0160 54 DGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTRD--LYYEPYVELAEKLTALAPGS-GLKKVFFGNSGAEAV 130 (447)
T ss_pred CCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCCc--ccchhHHHHHHHHHHhCCcc-cCCeEEecCCcHHHH
Confidence 68889999997644 333 7999999999876532 22211 12255666666666543321 346899999999999
Q ss_pred HHHHHHhc--CCCCEEEEcCCCCCChHHH-HHHcCC-------------EEEEecCCCC--CCCCC--------CHHHHH
Q 014172 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEM-ARIADA-------------TPVILPTRIS--ENFLL--------DPKVLE 222 (429)
Q Consensus 169 ~~~l~~l~--~~gd~Vlv~~p~y~~~~~~-~~~~g~-------------~~~~v~~~~~--~~~~~--------d~e~l~ 222 (429)
+++++... .....||...-+|++-... +.+.|- .+..+|.... ..+.. ..+.++
T Consensus 131 E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e 210 (447)
T COG0160 131 EAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIE 210 (447)
T ss_pred HHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHH
Confidence 99988753 2346788888877764432 222221 2455554321 11111 234455
Q ss_pred hhccc------CCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceE
Q 014172 223 SKLTE------KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295 (429)
Q Consensus 223 ~~l~~------~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i 295 (429)
+.+.. ++.++++...+.-.|.+. |++.++++.++|++| |+++|.||++.++...| ..+.+....- .-
T Consensus 211 ~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~-gillI~DEVQtG~GRTG-~~fa~E~~gv----~P 284 (447)
T COG0160 211 RALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREH-GILLIADEVQTGFGRTG-KMFAFEHFGV----EP 284 (447)
T ss_pred HHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccc-cchhhhhcCC----CC
Confidence 54421 456777777788788554 555799999999999 99999999999986666 2333333221 22
Q ss_pred EEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 014172 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 296 ~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (429)
-+-+++|.+| .|+.+|.+++.+++.+ ...-....+++.++.+.+++.+.|+. .++ +++.++-++.=+++.++|
T Consensus 285 Divt~aK~ig-~G~Pl~avv~r~ei~~-~~~g~~~~Tf~GNpva~Aaa~AvL~v---ie~--e~L~~~a~~~G~~l~~~L 357 (447)
T COG0160 285 DIVTLAKSLG-GGLPLSAVVGRAEIMD-WPPGGHGGTFGGNPVACAAALAVLDV---IEE--ENLLERAAELGEYLRDRL 357 (447)
T ss_pred CEEEeccccc-CCCceeEEeccHHhcc-cCCcccCCCCCcCHHHHHHHHHHHHH---HHH--ccHHHHHHHHHHHHHHHH
Confidence 2566999999 6999999999999988 44444455678899999999999984 122 144455555555555555
Q ss_pred ccC----CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 376 GEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 376 ~~l----~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++ |-+-=++..| +++-+++-.-.... .....-...++.+++++ |+.+
T Consensus 358 ~~l~~~~~~IgdVRG~G-lm~giE~v~d~~t~---~p~~~~~~~i~~~~~~~-Glil 409 (447)
T COG0160 358 EELQEKHPLIGDVRGLG-LMIGVELVKDRDTK---EPDAELAAKIVARAFER-GLLL 409 (447)
T ss_pred HHHHhhcCceecccccc-eEEEEEEecCCCCC---CCCHHHHHHHHHHHHHc-CCEE
Confidence 543 3222233444 44666664210000 00001356788888777 7654
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-14 Score=145.00 Aligned_cols=156 Identities=21% Similarity=0.205 Sum_probs=116.4
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH-HHHcCCEEEEecCCCCCCC----CCCHH-----HHHh
Q 014172 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRISENF----LLDPK-----VLES 223 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~----~~d~e-----~l~~ 223 (429)
.....++++|+|.++..++++++.+||.||++..+|-+.... +.+.|++++++.... +.+ .++++ .|++
T Consensus 189 Ad~tyFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~-n~~Gi~g~I~~~~~~~~~i~~ 267 (720)
T PRK13578 189 ADKTYFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETAR-NPFGFIGGIDAHCFDEEYLRE 267 (720)
T ss_pred CCceEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccc-cccCCcCCCChHHccHHHHHH
Confidence 456789999999999999999999999999999999998885 899999999997543 222 24544 4887
Q ss_pred hcccC----------CcEEEEcCCCCCccCCCCHHHHHHHHHH-HHhCCCeEEEEccCCcc-cccCCC---CCCccccCC
Q 014172 224 KLTEK----------SRLLILCSPSNPTGSVYPKNLLDEIARI-VAKHPRLLVLSDEIYEH-IIYAPA---THTSFASLP 288 (429)
Q Consensus 224 ~l~~~----------~~~i~l~~p~NPtG~~~~~~~l~~I~~~-a~~~~~i~vi~Deay~~-~~~~~~---~~~~~~~~~ 288 (429)
++... .++++|++|+. -|.+++ +++|+++ ++.+ + .|++||||+. +.|.+. .+.+.....
T Consensus 268 ~i~~~~p~~~~~~~p~k~vvit~pTY-dG~~yd---i~~I~~~~~h~~-~-~llvDEAhgah~~F~p~~~~~p~~al~~G 341 (720)
T PRK13578 268 QIREVAPERADEARPFRLAVIQLGTY-DGTIYN---ARQVVDKIGHLC-D-YILFDSAWVGYEQFIPMMADCSPLLLELN 341 (720)
T ss_pred HHHhcCccccccccCceEEEEECCCC-cceeec---HHHHHHHhhccC-C-cEEEeCcchhhhccCcccccCChhhhhcC
Confidence 77532 58899999987 899999 8889998 6777 7 8899999984 445442 122222333
Q ss_pred CCCCceEEEeccChhcccccceee-EEEcCH
Q 014172 289 GMWERTLTVNGFSKAFAMTGWRLG-YIAGPK 318 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G~R~G-~v~~~~ 318 (429)
.+...++++.|.+|.++ ++.-+ ++....
T Consensus 342 aD~p~i~v~QStHKtL~--alTQaS~LHvk~ 370 (720)
T PRK13578 342 ENDPGIFVTQSVHKQQA--GFSQTSQIHKKD 370 (720)
T ss_pred CCCCCeEEEEChhhcch--hhhhHhhhhcCC
Confidence 32345699999999984 44443 444433
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-13 Score=133.61 Aligned_cols=284 Identities=10% Similarity=0.070 Sum_probs=186.2
Q ss_pred CCChHHHHHHHHHHHHc----CCCCCCCCCCCH---HHHHHHHHHHHhhcCCCCCCCcEEEe-cChHHHHHHHHHHhcCC
Q 014172 107 FDTPVLIAEAGINAIRE----GFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVS-NGAKQSILQAVLAVCSP 178 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~----~~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~i~~t-~G~~~al~~~l~~l~~~ 178 (429)
...|+.|++++...+.+ +...+......+ ++.+.+.+.+++.++.+ +..+|+++ ++++.+++.++..++.+
T Consensus 12 ~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~-~~~~v~~~~gsgt~~~Ea~~~nl~~~ 90 (360)
T PRK05355 12 AMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIP-DNYKVLFLQGGASLQFAMVPMNLLGG 90 (360)
T ss_pred CCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEEcCCchHHHHHHHHhcCCC
Confidence 34689999999987632 122222222223 66677777777777742 23456555 66889999999999999
Q ss_pred CCEEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHh-hcccCCcEEEEcCCCCCccCCCCHHHHHHHHH
Q 014172 179 GDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLES-KLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (429)
Q Consensus 179 gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~-~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~ 255 (429)
||++++..-+..+. .+.++..|.. +.+...+..+. .+..++++ .+++++++|.+++-.+.||+..+ .+++|
T Consensus 91 g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~-~~~~~~~~~~l~~~~~~V~~th~eTstGv~~~--~i~~i-- 164 (360)
T PRK05355 91 GKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGF-TYIPPLDEWQLSDDAAYVHYTSNETIDGTEFH--ELPDT-- 164 (360)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCC-CCCCChhhccCCCCCCEEEEccCCCcceEecC--ccccc--
Confidence 99888776655443 4678888865 56655432333 34444444 77778999999999999999984 15555
Q ss_pred HHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH--------
Q 014172 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------- 327 (429)
Q Consensus 256 ~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~-------- 327 (429)
| ++++|+|.+.+. +..+..+.. ++ +++.|..|.+|.+| +|++++++++++.+...
T Consensus 165 ----~-g~l~vVDavss~----g~~~idv~~----~d--~~~~ssqK~lgP~G--lg~l~~s~~~l~~~~~~~~~~~~~~ 227 (360)
T PRK05355 165 ----G-DVPLVADMSSDI----LSRPIDVSK----FG--LIYAGAQKNIGPAG--LTIVIVREDLLGRALPSIPSMLDYK 227 (360)
T ss_pred ----C-CCcEEEEcCccc----cCccCCHHH----cc--EEEEeccccccCCc--eEEEEECHHHHhhcccCCChHHHHH
Confidence 7 899999999876 333333332 23 88999999998666 89999998887665431
Q ss_pred ---h-hcccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCceeecC---CceEEEEEecCCc
Q 014172 328 ---Q-SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTY 399 (429)
Q Consensus 328 ---~-~~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p---~~~~~~~~~l~~~ 399 (429)
. .....+++.....++.++|+.- .++ .++++.+++++..+++++.|++++.+....+ ..+.-+.+.+++.
T Consensus 228 ~~~~~~~~~~Tp~~~~i~aL~~aL~~i--~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~ 305 (360)
T PRK05355 228 THADNDSMYNTPPTFAIYLAGLVFKWL--KEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE 305 (360)
T ss_pred HHHhcCCccCCCcHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh
Confidence 1 1123456777777777777741 133 4888999999999999999999843222111 2323355666642
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++...+.++ |+.+
T Consensus 306 -----------~~~~~~~~~~~~~-Gi~~ 322 (360)
T PRK05355 306 -----------ELDKKFLAEAKAA-GLVG 322 (360)
T ss_pred -----------HHHHHHHHHHHHC-CCcc
Confidence 1234555665544 6643
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=135.53 Aligned_cols=279 Identities=11% Similarity=0.031 Sum_probs=175.4
Q ss_pred CChHH-HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEec-ChHHHHHHHHHHhcCC-CCEEEE
Q 014172 108 DTPVL-IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSILQAVLAVCSP-GDEVII 184 (429)
Q Consensus 108 ~~p~~-v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~-G~~~al~~~l~~l~~~-gd~Vlv 184 (429)
.+|+. +++++........ ..++ -..++.+.+.+.+.+.+|.+ ++++|++++ |+|.+++.++..++++ ++.|++
T Consensus 22 ~~~~~~v~~a~~~~~~~~~-hr~~--~f~~~~~~~r~~l~~l~~~~-~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~ 97 (378)
T PRK03080 22 KKRPGWQLEALADALLGRS-HRQK--PVKALLKRVIEGTRELLSLP-EGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA 97 (378)
T ss_pred CCChHHHHHHHHhhhcccC-cCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEECCchHHHHHHHHHhcCCCCcceEEE
Confidence 34566 8888886543211 2222 22444445555555555632 345788886 8999999999999875 455555
Q ss_pred cCCCCCCh-HH-HHHHcCC-EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 185 PAPFWVSY-PE-MARIADA-TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 185 ~~p~y~~~-~~-~~~~~g~-~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
.-.|..- .. ..+..|+ +++.++.+ .+..+|+++++. ++.|.+++..|.||..+| +++|++ ++|
T Consensus 98 -~g~f~~~~~~~~~~~~g~~~v~~~~~~--~g~~~d~~~i~~-----~~~V~~~h~~t~tG~~~p---i~~I~~--~~~- 163 (378)
T PRK03080 98 -WESFGSKWATDVVKQLKLEDPRVLEAD--YGSLPDLSAVDF-----DRDVVFTWNGTTTGVRVP---VARWIG--ADR- 163 (378)
T ss_pred -eCHHHHHHHHHHHhhcCCCCceEeccC--CCCCCCHhhcCC-----CCCEEEEecCCccceecc---chhhcc--ccC-
Confidence 3344432 22 2356798 88888864 334578777442 567889999999999999 778888 788
Q ss_pred CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh-------------
Q 014172 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------- 328 (429)
Q Consensus 262 ~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~------------- 328 (429)
|+++|+|.+++. |..+..+.. -.+++.|..|+++. ...+|+++.+++.++.+....
T Consensus 164 g~~~vVDa~qs~----G~~pidv~~------iD~~~~s~~K~l~~-P~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~ 232 (378)
T PRK03080 164 EGLTICDATSAA----FALPLDWSK------LDVYTFSWQKVLGG-EGGHGMAILSPRAVERLESYTPARPIPKFFRLTK 232 (378)
T ss_pred CCeEEEeccccc----ccCCCCHHH------CcEEEEehhhhCCC-CCceEEEEECHHHHHhhhcccCCCCCchhheecc
Confidence 999999999886 333333332 24889999999862 234899999998887654311
Q ss_pred ---------hccc-CCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCceeec--C--CceEEE
Q 014172 329 ---------SQFT-SGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--QGAFYL 392 (429)
Q Consensus 329 ---------~~~~-~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~--p--~~~~~~ 392 (429)
...+ ..++.....++.++|+. ..+ .++++.++.+++.+++++.|++++++++.. + .++..+
T Consensus 233 ~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~---l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~ 309 (378)
T PRK03080 233 GGKAIENSFKGQTINTPSMLTVEDYLDQLDW---ANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSV 309 (378)
T ss_pred chHHhhhhhcCCcccCchHHHHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEE
Confidence 0001 12333344444555553 222 467788888999999999999886666542 2 232335
Q ss_pred EEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++++. . . ....++..+|+++ |+.+
T Consensus 310 ~~~~~~~-~---~-----~~~~~~~~~l~~~-~i~v 335 (378)
T PRK03080 310 TLDFVDA-Q---A-----AVDAAAVAKLLRE-NGAV 335 (378)
T ss_pred EEEcCCc-h---H-----HHHHHHHHHHHHc-CCee
Confidence 5566540 0 0 0234577778776 5543
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=143.33 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC-C
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-N 213 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~ 213 (429)
.+..+..|+. || .....++++|+|.++..++++++++||.|+++..+|-+....+.+.|+++++++..... +
T Consensus 208 ~eAq~~aA~~----fg---A~~t~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~~~~G 280 (755)
T PRK15029 208 GESEKYAARV----FG---ADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSRNRYG 280 (755)
T ss_pred HHHHHHHHHH----hC---CCcEEEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccccccC
Confidence 3444444444 45 45688999999999999999999999999999999999999999999999999744311 1
Q ss_pred --CCCC-----HHHHHhhccc--CCc--------EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCc-ccc
Q 014172 214 --FLLD-----PKVLESKLTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HII 275 (429)
Q Consensus 214 --~~~d-----~e~l~~~l~~--~~~--------~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~-~~~ 275 (429)
..++ ++.+++++.. ..+ +++|++|+. -|.+++ +++|+++|+++ ++.|++||||+ ++.
T Consensus 281 i~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY-~Gv~~d---i~~I~~~~h~~-~~~llvDEAhGah~~ 355 (755)
T PRK15029 281 IIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY-DGVCYN---AKEAQDLLEKT-SDRLHFDEAWYGYAR 355 (755)
T ss_pred CccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC-cceeeC---HHHHHHHHHhc-CCeEEEECccccccc
Confidence 1234 8999988853 334 899999987 799999 99999999999 99999999997 455
Q ss_pred cCCCCCC-ccccC-C-CCCCc-eEEEeccChhcccccceeeE
Q 014172 276 YAPATHT-SFASL-P-GMWER-TLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 276 ~~~~~~~-~~~~~-~-~~~~~-~i~~~S~SK~~~~~G~R~G~ 313 (429)
|.+.-+. +.... . ...+- ++++.|.+|.+ +++..|.
T Consensus 356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL--~alTQaS 395 (755)
T PRK15029 356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQAS 395 (755)
T ss_pred cCccccccccccccccccCCCceEEEEchhhcc--cchhhhh
Confidence 5542221 11100 0 10233 49999999998 4555554
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-13 Score=127.55 Aligned_cols=219 Identities=15% Similarity=0.174 Sum_probs=159.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH----HHHHHcCCEEEEe
Q 014172 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP----EMARIADATPVIL 206 (429)
Q Consensus 131 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v 206 (429)
++....|.+.|+..- .|+ .-+.+.++..++..++..++++||.|+...--|.+.. ..++..|.++.++
T Consensus 61 NPT~~vlE~RiAaLE---GG~-----aa~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fv 132 (426)
T COG2873 61 NPTTDVLEERIAALE---GGV-----AALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFV 132 (426)
T ss_pred CchHHHHHHHHHHhh---cch-----hhhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEe
Confidence 345677888888763 232 2467778888999999999999999999998888654 3457789999999
Q ss_pred cCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc
Q 014172 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~ 286 (429)
+. .|++.++++++++||+|++.+-.||.+.+.+ +++|+++|++| ++.+|+|....-- .-+..
T Consensus 133 d~-------~d~~~~~~aI~~nTkavf~EtigNP~~~v~D---ie~ia~iAh~~-gvpliVDNT~atp-------yl~rP 194 (426)
T COG2873 133 DP-------DDPENFEAAIDENTKAVFAETIGNPGLDVLD---IEAIAEIAHRH-GVPLIVDNTFATP-------YLCRP 194 (426)
T ss_pred CC-------CCHHHHHHHhCcccceEEEEeccCCCccccC---HHHHHHHHHHc-CCcEEEecCCCcc-------eecch
Confidence 74 3899999999999999999999999999999 99999999999 9999999987641 11122
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEEcCH---HHH---------------------H---------HH-HHHhhccc
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---HFV---------------------A---------AC-NKIQSQFT 332 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~---~~~---------------------~---------~l-~~~~~~~~ 332 (429)
+ ..+-.|++.|.+|.+|-.|--+|-++.+. ++. + +. ....+-.+
T Consensus 195 ~--~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~YhGl~~~~~~g~~af~~~~r~~~lRDlG 272 (426)
T COG2873 195 I--EHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSYHGLVYTETFGNAAFIIKARVQLLRDLG 272 (426)
T ss_pred h--hcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccccceehhhhcccHHHHHHHHHHHHHhcc
Confidence 2 24667999999999988888888776531 111 1 00 11122233
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
.+.+++.....+. +-+-+.-+.++..++...+.+-|++.|.+.|+
T Consensus 273 a~lsPfnAfl~lq-------GlETL~LRmerH~~NA~~vA~~L~~HpkV~~V 317 (426)
T COG2873 273 ATLSPFNAFLLLQ-------GLETLSLRMERHCENALKVAEFLENHPKVAWV 317 (426)
T ss_pred cccCcHHHHHHHh-------chhhhHHHHHHHHHhHHHHHHHHhcCCCeeee
Confidence 3344443322222 12345566777788888899999988777664
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-13 Score=133.53 Aligned_cols=318 Identities=12% Similarity=0.063 Sum_probs=185.8
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+.+||+..|... ++- +|++.+++.+++++.. .+... ....+.+..+|+.+.+.... +.+.+++++++++++
T Consensus 48 dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~-~~~~~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~sGSEAv 124 (461)
T PRK07482 48 QGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELA-YYHTYVGHGTEASITLSKRIIDRAPA--GMSKVYYGLSGSDAN 124 (461)
T ss_pred CCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcC-ccccccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCchHHHH
Confidence 57889999988643 333 7899999999987632 11111 12346667777777654321 246899999999999
Q ss_pred HHHHHHhc------C-CC-CEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCC-----------CC
Q 014172 169 LQAVLAVC------S-PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENF-----------LL 216 (429)
Q Consensus 169 ~~~l~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~-----------~~ 216 (429)
+.+++... . +| .+|+...-+|.+....+..... .+..++....... .-
T Consensus 125 e~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 204 (461)
T PRK07482 125 ETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAY 204 (461)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHH
Confidence 99988763 1 22 5788888888875433222111 1122221110000 00
Q ss_pred CHHHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 217 DPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 217 d~e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
+++.+++.+. +++.+|++...+.-.|.. .+.+.+++|.++|++| |+++|.||++.+|-..|... ....+.-..
T Consensus 205 ~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~~-a~~~~gv~P 282 (461)
T PRK07482 205 CADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKY-DILLIADEVVTGFGRLGSMF-GSDHYGIEP 282 (461)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCcchh-hHHhcCCCC
Confidence 3567777773 235566654445555766 5677899999999999 99999999999874333211 111111111
Q ss_pred CceEEEeccChhcccccc-eeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
| +-+++|.++ .|. .+|.+++.+++.+.+... ....+++.++++.+++.+.|+. .++ +++.+.
T Consensus 283 D----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~---~~~--~~l~~~ 352 (461)
T PRK07482 283 D----LITVAKGLT-SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDI---LER--ENLVGN 352 (461)
T ss_pred C----EEEEccccc-cCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHH---HHh--CCHHHH
Confidence 2 444899998 785 899999999988777521 1234566788898888888874 111 122333
Q ss_pred HHHHHHHHHHHhc----cCCCceeecCCceEEEEEecCCccCCcccCCCCC-CChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI-ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~----~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~Ll~~~gV~v 428 (429)
.++.-+++.+.|+ +.+-+.-++..|-| +-+.+..... ..+.+... .-...++..|+++ ||.+
T Consensus 353 ~~~~g~~l~~~L~~l~~~~~~v~~vrG~Glm-~giel~~~~~-~~~~~~~~~~~~~~i~~~~~~~-Gvl~ 419 (461)
T PRK07482 353 AAEVGAYFRARLRAAFGDHPLVGEVRGVGML-AAVEFVADRD-DRTPFDPALKIGPQVSAAALER-GVIA 419 (461)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeeceeE-EEEEeccCCC-cCCCCChhhHHHHHHHHHHHHC-CcEE
Confidence 3344444444443 44333334455544 5565532100 00000000 0135678888776 7764
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-13 Score=134.73 Aligned_cols=313 Identities=14% Similarity=0.144 Sum_probs=181.7
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|.. .++- +|.+.+++.+.+.+.. .+. -..+....+++.+.+..+ ...+.|.+++++++++
T Consensus 50 ~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~---~~~~~~~~la~~L~~~~~--~~~~~v~f~~SGsEA~ 123 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT-SYG---LTSEQEILFAEELFSYLG--LEDHKIRFVSSGTEAT 123 (433)
T ss_pred CCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC--CCcCEEEEeCchHHHH
Confidence 35788999988863 3444 7999999999887643 221 113445556666655443 1236899999999999
Q ss_pred HHHHHHhcC-CC-CEEEEcCCCCCChHHH----HHHcCCE---E-EEecCCC--CC----CCCCCHHHHHhhcc---cCC
Q 014172 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEM----ARIADAT---P-VILPTRI--SE----NFLLDPKVLESKLT---EKS 229 (429)
Q Consensus 169 ~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~----~~~~g~~---~-~~v~~~~--~~----~~~~d~e~l~~~l~---~~~ 229 (429)
..+++.... .| ..|+...-+|.+.... ....+-. . ......+ .. .+ -|++.+++.+. ++.
T Consensus 124 e~AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~ 202 (433)
T PRK00615 124 MTAVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY-NDFQIFQTVMNSLGHRV 202 (433)
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC-CCHHHHHHHHHhcCCce
Confidence 999887642 34 5788888888875421 1111100 0 0000000 00 01 16788888774 244
Q ss_pred cEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc
Q 014172 230 RLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 230 ~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 308 (429)
.+|++.......|... +.+.+++|.++|++| |+++|.||++.++. .|. ......+.-..| | .+|+|.+| .|
T Consensus 203 aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~R-~G~-~ga~~~~gv~PD--i--~~~gK~lg-gG 274 (433)
T PRK00615 203 AGVIFEPICANMGVVLPKPGFIEGIIQTCRRT-GSLSIMDEVVTGFR-VAQ-GGAAAIYHVKPD--I--TVYGKILG-GG 274 (433)
T ss_pred EEEEECCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEccccccc-ccH-hHHHHhcCCCCC--e--EEEccccc-CC
Confidence 5666655566667755 467899999999999 99999999998762 332 111111111112 3 35899998 78
Q ss_pred ceeeEEEcCHHHHHHHHHHh---hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH----HHHhccCCC-
Q 014172 309 WRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL----VKSFGELEG- 380 (429)
Q Consensus 309 ~R~G~v~~~~~~~~~l~~~~---~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l----~~~L~~l~g- 380 (429)
..+|++++++++++.+.... ...+++.++++.+++.+.|+.- ++ +..++..+++-+++ .+.+.+. |
T Consensus 275 ~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i---~~--~~~~~~~~~~g~~l~~~l~~~~~~~-g~ 348 (433)
T PRK00615 275 LPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLC---RE--QGFYTQLSTLEQNFLSPIEEMIRSQ-GF 348 (433)
T ss_pred cceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHH---hc--ccHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 88999999999998875321 2234456788888888888751 11 12233333444444 3333332 3
Q ss_pred -ceeecCCceEEEEEecCCccCCcc--cCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 -VKMSEPQGAFYLFIDFSTYYGSEA--EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 -~~~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.... .|.+ +.+.+......+. ...........+...|+++ ||.+
T Consensus 349 ~v~~~r-~G~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~ 396 (433)
T PRK00615 349 PVSLVR-YGSM-FSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSK-GVYL 396 (433)
T ss_pred CeEEEe-eceE-EEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHC-Ceee
Confidence 44444 4444 4555532100000 0000001134788888876 8875
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-13 Score=131.18 Aligned_cols=232 Identities=14% Similarity=0.108 Sum_probs=157.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|. ..+.. +|.+.+++.+.+++.. .+++. -..+....+++.+.+..+ .+.++++++++++++
T Consensus 22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~-~~~~~-~~~~~~~~la~~l~~~~~----~~~v~~~~SGseA~e 95 (364)
T PRK04013 22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLV-VAGPM-FEHEEKEEMLEELSKWVN----YEYVYMGNSGTEAVE 95 (364)
T ss_pred CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcC-CccCC-cCCHHHHHHHHHHHhhcC----CCEEEEeCchHHHHH
Confidence 577899998875 33444 6888999999887632 12221 123445555666554433 358999999999999
Q ss_pred HHHHHhc-CCC-CEEEEcCCCCCChHHHHHHc--------CCE-----EEEecCCCCCCCCCCHHHHHhhcccCCcEEEE
Q 014172 170 QAVLAVC-SPG-DEVIIPAPFWVSYPEMARIA--------DAT-----PVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 170 ~~l~~l~-~~g-d~Vlv~~p~y~~~~~~~~~~--------g~~-----~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l 234 (429)
.+++... ..| ++|+..+.+|.+....+... +.. +..+| + .|++.+++.+.+++++|++
T Consensus 96 ~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~------~-~d~~~l~~~i~~~~aAviv 168 (364)
T PRK04013 96 AALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIP------F-NDVEAAKEAITKETAAVIF 168 (364)
T ss_pred HHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEec------C-CCHHHHHHHhcCCcEEEEE
Confidence 9988763 245 88999999888865443321 111 11222 1 2788899999888888888
Q ss_pred cCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 235 CSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 235 ~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
...+...|. ..+.+.+++|.++|++| |+++|.||++.++ ..|.. .....+.-..| +-+|+|.++ .|..+|.
T Consensus 169 Epi~g~gG~~~~~~~yl~~lr~lc~~~-gillI~DEv~tG~-RtG~~-~a~~~~gv~PD----iv~~gK~lg-gG~P~~a 240 (364)
T PRK04013 169 EPIQGEGGIVPAKEEFVKTLRDLTEDV-GALLIADEVQSGL-RTGKF-LAIEHYKVEPD----IVTMGKGIG-NGVPVSL 240 (364)
T ss_pred cCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhcC-CCCch-hHHHhcCCCCC----EEEeccccc-CCceeEE
Confidence 766665565 44677899999999999 9999999999987 44421 11111111112 555799999 7899999
Q ss_pred EEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc
Q 014172 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 314 v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
++.+.++. ......+++.++.+.+++.+.|+.
T Consensus 241 ~~~~~~~~----~~~~~~T~~gnp~~~aaa~a~l~~ 272 (364)
T PRK04013 241 TLTNFDVE----RGKHGSTFGGNPLACKAVAVTLRI 272 (364)
T ss_pred EEeccccc----CCCcCCCCCcCHHHHHHHHHHHHH
Confidence 99877652 122335666788888888888874
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=131.21 Aligned_cols=243 Identities=18% Similarity=0.214 Sum_probs=157.5
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|... ++- +|.+.+++.+.+.+......+ .+....+++.+.+..+ ..+.+++++++++++
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~----~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~ 122 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTP----TELEIEFAKMLKEAIP---SLEKVRFVNSGTEAV 122 (428)
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCC----CHHHHHHHHHHHHhCC---CCcEEEEeCCHHHHH
Confidence 367889999887643 343 689999999998764322212 2445666666654432 246899999999999
Q ss_pred HHHHHHhcC-CC-CEEEEcCCCCCChHHHHHH-cCCEEEE--------ecCC-CCCC---CCCCHHHHHhhcc---cCCc
Q 014172 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARI-ADATPVI--------LPTR-ISEN---FLLDPKVLESKLT---EKSR 230 (429)
Q Consensus 169 ~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~g~~~~~--------v~~~-~~~~---~~~d~e~l~~~l~---~~~~ 230 (429)
..+++.... .| ..|+...-+|.+....+.. .|..... ++.. ..+. --.|++.+++.+. .++.
T Consensus 123 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~va 202 (428)
T PRK12389 123 MTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVA 202 (428)
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEE
Confidence 999887532 23 6788888888876543332 2211100 0000 0000 0027888888875 2455
Q ss_pred EEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccc
Q 014172 231 LLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (429)
Q Consensus 231 ~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 309 (429)
+|++.......|.+. +.+.+++|.++|++| |+++|.||++.+|.. +.. .....+.-..| +.+|+|.++ .|.
T Consensus 203 avi~EPv~g~~G~~~p~~~yl~~l~~lc~~~-g~llI~DEV~tG~Rt-~~~-~a~~~~gv~PD----ivt~gK~lg-gG~ 274 (428)
T PRK12389 203 AVLVEPIVGNFGIVEPKPGFLEAVNELAHEA-GALVIYDEVITAFRF-MYG-GAQDLLGVEPD----LTALGKIIG-GGL 274 (428)
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEcccccccc-Ccc-hhhHHhCCCCC----eeeechhhc-CCC
Confidence 666655566678655 577899999999999 999999999998632 211 00111111112 457999998 889
Q ss_pred eeeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhc
Q 014172 310 RLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 310 R~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
.+|.+++++++++.+... ....+++.++++.+++.+.|+.
T Consensus 275 Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~ 317 (428)
T PRK12389 275 PIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEV 317 (428)
T ss_pred ceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHH
Confidence 999999999998887521 1223556788888888888875
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-13 Score=120.18 Aligned_cols=285 Identities=16% Similarity=0.160 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW 189 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y 189 (429)
|+.+.+++.. ....|.. +...++.+.+-+-++..|-. .++.-.++...++.+++.++..++.|||.|++..-.-
T Consensus 29 ~~~V~~A~~~----~~lgh~s-Pe~~qIm~~v~egikyVFkT-~n~~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~ 102 (385)
T KOG2862|consen 29 SGRVQEAMSR----PSLGHMS-PEFVQIMDEVLEGIKYVFKT-ANAQTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGT 102 (385)
T ss_pred CHHHHHhhcC----CccccCC-HHHHHHHHHHHHHHHHHhcc-CCCceEEEecCCcchHHHHHHhhcCCCCeEEEEEech
Confidence 5555555443 3344532 22344444444444333332 2334566777788999999999999999998876543
Q ss_pred CC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEE
Q 014172 190 VS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266 (429)
Q Consensus 190 ~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi 266 (429)
.+ +.++++..|+++..++.+. +....+|+|.+.+.. +++++++++...-||+..+. ++.+.++|++| +.+++
T Consensus 103 wg~ra~D~~~r~ga~V~~v~~~~--G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~--~~~~g~lc~k~-~~lll 177 (385)
T KOG2862|consen 103 WGQRAADCARRYGAEVDVVEADI--GQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL--LAISGELCHKH-EALLL 177 (385)
T ss_pred HHHHHHHHHHhhCceeeEEecCc--ccCccHHHHHHHHHhcCCceEEEEecCccccccchH--HHHHHHHhhcC-CeEEE
Confidence 33 4578999999999997654 445899999998864 78999999999999999883 55677899999 89999
Q ss_pred EccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh-----------------
Q 014172 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS----------------- 329 (429)
Q Consensus 267 ~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~----------------- 329 (429)
+|.+-+- |.. .+ .++ .++..+....--|+++.| ..++-+..++...++++..+.
T Consensus 178 VD~VaSl----ggt--~F-~mD-ewgVDvaytgSQKaL~aP-~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wg 248 (385)
T KOG2862|consen 178 VDTVASL----GGT--EF-EMD-EWGVDVAYTGSQKALGAP-AGLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWG 248 (385)
T ss_pred Eechhhc----CCc--cc-eeh-hhcccEEEecchhhcCCC-CCcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhc
Confidence 9998764 111 11 223 267777777777999843 345667778887777754432
Q ss_pred ------cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec----CCceEEEEEecCCc
Q 014172 330 ------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFIDFSTY 399 (429)
Q Consensus 330 ------~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~----p~~~~~~~~~l~~~ 399 (429)
.+...++....+...++|.. ..++.+++..++.++..+++...|+++ |++... +...---.+.+|..
T Consensus 249 c~~e~~~yhhT~pv~lly~Lr~AL~~--I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~g 325 (385)
T KOG2862|consen 249 CDGEPRAYHHTPPVQLLYSLRAALAL--IAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYG 325 (385)
T ss_pred cCCcccccccCCcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCC
Confidence 12334566666666777764 136889999999999999999999998 765431 11222234666654
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|-.+++.+++.+++|.+
T Consensus 326 -----------vDw~dVv~~~~~~~~vei 343 (385)
T KOG2862|consen 326 -----------VDWKDVVAYAMSHYVVEI 343 (385)
T ss_pred -----------CCHHHHHHHHHHhcCEEe
Confidence 478899999999987764
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-12 Score=130.89 Aligned_cols=314 Identities=15% Similarity=0.131 Sum_probs=184.9
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+.+||+..|.. .++- +|++.+++.+.+.+..+.. ...-..+....+|+.+.+..+.. ..+.+++++++++++
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~lAe~L~~~~p~~-~~~~v~f~~SGsEA~ 128 (441)
T PRK05769 51 VDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYS-LTDFYYEPAVELAERLVEIAPGG-FEKKVFFTNSGTESN 128 (441)
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCcc-CcccCCHHHHHHHHHHHHhCCCC-CCCEEEECCchHHHH
Confidence 35788999988863 3443 6889999999987632211 11112345666777776543210 136899999999999
Q ss_pred HHHHHHhcC-CC-CEEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCCC--CC---------CCHHHH
Q 014172 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISEN--FL---------LDPKVL 221 (429)
Q Consensus 169 ~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~~--~~---------~d~e~l 221 (429)
..+++.... .| .+|+...-+|.+....+... |. .+..++....-. +. -+++.+
T Consensus 129 e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (441)
T PRK05769 129 EAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFI 208 (441)
T ss_pred HHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHH
Confidence 999886532 23 67888888888766433322 21 122333211000 00 012345
Q ss_pred Hh-hcc-----cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCce
Q 014172 222 ES-KLT-----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (429)
Q Consensus 222 ~~-~l~-----~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (429)
++ .++ +++.+|++...+...|... +.+.+++|.++|++| |+++|.||++.++...|.. .....+.-..+
T Consensus 209 e~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~tG~gr~G~~-~a~~~~gv~pD-- 284 (441)
T PRK05769 209 EDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKY-GILLIDDEVQTGMGRTGKM-FAIEHFGVEPD-- 284 (441)
T ss_pred HHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccce-ehhhccCCCCC--
Confidence 55 221 2455555554566667654 577899999999999 9999999999976444421 11122211112
Q ss_pred EEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
+ .+|+|.++ .|+++|++++++++++.+.. ....+++.+++++.++.+.|+. .++ +..+..+++-+++.+.
T Consensus 285 i--vt~~K~l~-~G~p~gav~~~~~i~~~~~~-~~~~T~~g~p~~~aaa~a~L~~---l~~---~~~~~~~~~g~~l~~~ 354 (441)
T PRK05769 285 I--ITLAKAIA-GGLPLGAVIGRAELMFLPPG-SHANTFGGNPVAAAAALATLEE---LEE---GLLENAQKLGEYLRKE 354 (441)
T ss_pred E--EEEccccc-CCcccEEEEEehhhhhcCCC-CCCCCCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHH
Confidence 3 35899999 89999999999988754322 2233445688888888888875 222 5556666666677776
Q ss_pred hccC----CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 375 FGEL----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 375 L~~l----~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++ +-+.-+...| .++-+.+..... +. .......+.+.|+++ ||.+
T Consensus 355 L~~l~~~~~~~~~vrg~G-~~~~i~~~~~~~---~~--~~~~~~~~~~~~~~~-Gil~ 405 (441)
T PRK05769 355 LKELKEKYEFIGDVRGLG-LMIGVELVKDRK---EP--DPKLRDKVLYEAFKR-GLLL 405 (441)
T ss_pred HHHHHHhCCCeeeeecce-EEEEEEeccCCc---cc--cHHHHHHHHHHHHhC-CcEE
Confidence 6553 2122223334 435555532100 00 000234677777765 7765
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-13 Score=133.00 Aligned_cols=308 Identities=13% Similarity=0.070 Sum_probs=184.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++- +|++.+++.+++.+..+.. ...-..+.+..+++.+.+..+ ...+.++++++++++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~-~~~~~~~~~~~la~~L~~~~p--~~~~~v~f~~SGsEAve 117 (428)
T PRK07986 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVM-FGGITHPPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (428)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcc-ccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCCcHHHHH
Confidence 578899998875 33333 6899999999887532111 111124556667777765543 12368999999999999
Q ss_pred HHHHHhcC------C-CCEEEEcCCCCCChHHHHHHc-CC-------------EEEEecCCCCC---CC-CCCHHHHHhh
Q 014172 170 QAVLAVCS------P-GDEVIIPAPFWVSYPEMARIA-DA-------------TPVILPTRISE---NF-LLDPKVLESK 224 (429)
Q Consensus 170 ~~l~~l~~------~-gd~Vlv~~p~y~~~~~~~~~~-g~-------------~~~~v~~~~~~---~~-~~d~e~l~~~ 224 (429)
.+++.... . ..+|+....+|.+....+... +. .++.+|..... .+ .-|++.+++.
T Consensus 118 ~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~ 197 (428)
T PRK07986 118 VAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARL 197 (428)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHH
Confidence 99887542 2 367888888888754332221 21 11222221100 00 0156677777
Q ss_pred cc---cCCcEEEEcCC-CCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 225 LT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 225 l~---~~~~~i~l~~p-~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
+. ++..+|++... +.-.|. ..+++.+++|.++|++| |+++|.||++.++...|.. .....+.-.. .|+ +
T Consensus 198 l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~-g~lLI~DEv~tG~GrtG~~-fa~~~~gv~P--Di~--t 271 (428)
T PRK07986 198 MAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDRE-GILLIADEIATGFGRTGKL-FACEHAGIAP--DIL--C 271 (428)
T ss_pred HHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCCe-eeecccCCCC--CEE--E
Confidence 74 23445555442 444565 44668899999999999 9999999999775333321 1111111111 233 5
Q ss_pred cChhccccc-ceeeEEEcCHHHHHHHHHH-----hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 014172 300 FSKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 300 ~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-----~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (429)
|+|.++ .| ..+|.+++++++++.+... ....+++.++++.+++.+.|+. .++. ++++..+++-+++.+
T Consensus 272 ~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~---i~~~--~~~~~~~~~g~~l~~ 345 (428)
T PRK07986 272 LGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSL---LESG--DWQQQVAAIEAQLRE 345 (428)
T ss_pred echhhh-CCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHH---HHhC--CHHHHHHHHHHHHHH
Confidence 999998 78 5888889999999888642 1234555678888888887764 1111 234444444455555
Q ss_pred HhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 374 SFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 374 ~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|+++ +.+.-++..|- ++-+.+... .....+.+.|+++ ||.+
T Consensus 346 ~l~~l~~~~~i~~vRg~Gl-~~~ve~~~~-----------~~~~~~~~~l~~~-Gl~~ 390 (428)
T PRK07986 346 ELAPLRDAPMVADVRVLGA-IGVVETTRP-----------VNMAALQRFFVEQ-GVWI 390 (428)
T ss_pred HHHHHhcCCCEEeEeccce-EEEEEeCCc-----------ccHHHHHHHHHHC-CcEE
Confidence 55543 33333334444 355655421 1356788888766 8865
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-13 Score=129.66 Aligned_cols=317 Identities=15% Similarity=0.137 Sum_probs=198.9
Q ss_pred HHHHHHHHhcCCCeEEcCCCC---------CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q 014172 84 TDQATALAQAGVSVIRLAAGE---------PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 84 ~~~~~~~~~~g~~~i~L~~g~---------~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
.++.+.+++.|.+...|...+ -.-.+.+...+++.. +.-.|+.++...+|.+.+++.+.
T Consensus 21 e~R~~~l~~agyN~f~l~s~dV~IDLrSDTgT~apS~~m~aAM~~----GDD~Y~gdpSv~~Lee~vael~G-------- 88 (467)
T TIGR02617 21 AYREKAIIKAGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMR----GDEAYSGSRSYYALAESVKNIFG-------- 88 (467)
T ss_pred HHHHHHHHHcCCCcccCCCCCeEEECccCCCCCCCCHHHHHHHHc----CCcccccCchHHHHHHHHHHHhC--------
Confidence 345555666666554444444 221234555565553 56679888888999999999873
Q ss_pred CCcEEEecChHHHHHHHHHHhcC-CCCEEEEcCC-------C-CCChHHHHHHcCCEEEEecCC--------CCCCCCCC
Q 014172 155 PDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAP-------F-WVSYPEMARIADATPVILPTR--------ISENFLLD 217 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l~~-~gd~Vlv~~p-------~-y~~~~~~~~~~g~~~~~v~~~--------~~~~~~~d 217 (429)
.+.++.|..++.+-..+++.+++ |||++++..+ . |......+.+.|+.++.++.+ ....+.+|
T Consensus 89 ~E~alpthqGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~d 168 (467)
T TIGR02617 89 YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFD 168 (467)
T ss_pred CceEEECCCCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcC
Confidence 45678888888888988999998 7888775553 2 223346788899998886432 11235689
Q ss_pred HHHHHhhccc----CCcEEEEcCCCC-CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-ccc------CCCCCCccc
Q 014172 218 PKVLESKLTE----KSRLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIY------APATHTSFA 285 (429)
Q Consensus 218 ~e~l~~~l~~----~~~~i~l~~p~N-PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~------~~~~~~~~~ 285 (429)
+++|+++|++ +...+...--+| -.|.++|.+.++++.++|++| |+.++.|.+--. -.+ .+....++.
T Consensus 169 l~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~-GIplhLDgARl~nNA~fIk~rE~~a~~~si~ 247 (467)
T TIGR02617 169 LEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKY-DIPVVMDSARFAENAYFIKQREAEYKNWSIE 247 (467)
T ss_pred HHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHc-CCcEEEEhHHHHHHhhhhhhcchhhcCCCHH
Confidence 9999999974 222332211233 358999999999999999999 999999986321 011 011122333
Q ss_pred cCCC--CCCceEEEeccChhcccc-cceeeEEEcCHH----HHHHHHHHh-----hcccCCCchHHHHHHHHHHhcCCCC
Q 014172 286 SLPG--MWERTLTVNGFSKAFAMT-GWRLGYIAGPKH----FVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAG 353 (429)
Q Consensus 286 ~~~~--~~~~~i~~~S~SK~~~~~-G~R~G~v~~~~~----~~~~l~~~~-----~~~~~~~~~~~q~aa~~~l~~~~~~ 353 (429)
.+.. ...-+.+..|+||.++.+ | |+++++++ +.+.++... .....+.+.-...++..-|.+.. .
T Consensus 248 eI~rE~~~~aDsvt~slsKglgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~-~ 323 (467)
T TIGR02617 248 QITRETYKYADMLAMSAKKDAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGM-N 323 (467)
T ss_pred HHHHHhhccCCEEEEEcCCCCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcc-c
Confidence 2210 012226677899999866 4 66777654 333333221 12233456666666665565532 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc-CCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
++++..... ..++|.+.|.+. |+.++. .||.-++++..... +.....| .+..++-.|..+.||-
T Consensus 324 ~~yl~~ri~----qv~yl~~~L~~~-Gvpi~~-~Gghav~iDa~~~lphip~~~f----pa~al~~~ly~~~GiR 388 (467)
T TIGR02617 324 LDWLAYRIN----QVQYLVNGLEEI-GVVCQQ-AGGHAAFVDAGKLLPHIPADQF----PAHALACELYKVAGIR 388 (467)
T ss_pred HHHHHHHHH----HHHHHHHHHHhC-CCcEEe-cCccEEEEehhhhCCCCChhhC----cHHHHHHHHHHHcCcc
Confidence 455544443 445677777776 898887 88888888765431 1122333 6889999999998874
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-12 Score=129.32 Aligned_cols=261 Identities=15% Similarity=0.104 Sum_probs=163.9
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|... ++- +|.+.+++.+++.++.. ++ ...+....+++.+.+..+ .+.+.++++++++..
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~-~~---~~~~~~~~lAe~l~~~~~----~~~v~F~nSGtEA~e 144 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLT-TM---LPSEDAAWVGEELARRFG----LPYWQVATTATDANR 144 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCC-CC---CCCHHHHHHHHHHHHHhC----CCEEEEECCHHHHHH
Confidence 57889999877633 333 68999999999886532 21 123555666666665542 468999999999999
Q ss_pred HHHHHhcC-CC-CEEEEcCCCCCChHHHHHH--cCCE-----------------EEEecCCCCCCCCCCHHHHHhhccc-
Q 014172 170 QAVLAVCS-PG-DEVIIPAPFWVSYPEMARI--ADAT-----------------PVILPTRISENFLLDPKVLESKLTE- 227 (429)
Q Consensus 170 ~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~--~g~~-----------------~~~v~~~~~~~~~~d~e~l~~~l~~- 227 (429)
.+++.... .| +.|+...-+|.+....... .+.+ +..+| | -|++.+++.+..
T Consensus 145 ~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~-nd~~~l~~~l~~~ 217 (453)
T PRK07046 145 FVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVE------F-NDLAALEAALADG 217 (453)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeC------C-CCHHHHHHHhCCC
Confidence 99887532 23 6788888888886432221 1110 11111 1 178999988853
Q ss_pred CCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 228 KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+..+|++...+.-.|.+ .+.+.+++|.++|++| |+++|.||+.. |..+-........+. .| +.+|+|.+|
T Consensus 218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~-g~llI~DEV~t-fr~g~Gg~~~~~gv~--PD----i~t~gK~lg- 288 (453)
T PRK07046 218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRY-GTLLVIDETHT-ISSGPGGYTRAHGLE--PD----FLVVGKPIA- 288 (453)
T ss_pred CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEcccc-CccCCcchhHHhCCC--cc----ceeehhhhc-
Confidence 45555554334434544 4556899999999999 99999999987 322211111111111 12 446899999
Q ss_pred ccceeeEEEcCHHHHHHHHHH---------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 307 TGWRLGYIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~---------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.|..+|.+++++++++.+... ....+++.++++.+++.+.|+.-. .++.+++..+.-+..++.+.+.+.+
T Consensus 289 gG~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~-~~~~~~~~~~~g~~l~~~L~~l~~~ 367 (453)
T PRK07046 289 GGVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVM-TEAAYAHMLALAARLAAGLRAVIAR 367 (453)
T ss_pred CCCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887632 112355678888888888887411 1233344444334444444444444
Q ss_pred C
Q 014172 378 L 378 (429)
Q Consensus 378 l 378 (429)
.
T Consensus 368 ~ 368 (453)
T PRK07046 368 H 368 (453)
T ss_pred C
Confidence 4
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-12 Score=126.83 Aligned_cols=250 Identities=12% Similarity=0.034 Sum_probs=172.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 210 (429)
+..++.+.+-+|+.+.+|.+-+.-.=++|+|||+++..++.+-.+ +...|++++-+|.+...+++.+|.+++.||++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d- 208 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL- 208 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC-
Confidence 568999999999999999532122358899999999988877654 33578899999999999999999999999986
Q ss_pred CCCCCCCHHHHHhhcccC---CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCe-----EEEEccCCcccccCC-CCC
Q 014172 211 SENFLLDPKVLESKLTEK---SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL-----LVLSDEIYEHIIYAP-ATH 281 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~---~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i-----~vi~Deay~~~~~~~-~~~ 281 (429)
.++.+|++.|+++|..+ +-+|+.+.++-++|++=| +++|.++|++| |+ |+.+|.+|+++...- ...
T Consensus 209 -~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp---i~eIa~i~~~~-g~~~~~iwlHVDAA~GG~~lPf~~~~ 283 (470)
T PLN02263 209 -VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD---LDLVIKTLEEC-GFSQDRFYIHCDGALFGLMMPFVKRA 283 (470)
T ss_pred -CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC---HHHHHHHHHHc-CCccCCeeEEEeccchhhHhhhcccc
Confidence 45679999999988654 334556778889999988 99999999999 86 999999998764310 111
Q ss_pred CccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhc-----ccCCCchHHHHHHHHHHhcCCCChHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ-----FTSGASSISQKAGVAALGLGYAGGEV 356 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~-----~~~~~~~~~q~aa~~~l~~~~~~~~~ 356 (429)
+.+ .+. ....=+..+.+|.++ .....|.++..++.++.+.....+ .+...+.....++..+......+.+.
T Consensus 284 ~~~-df~--~~vDSIsvD~HK~l~-~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G 359 (470)
T PLN02263 284 PKV-TFK--KPIGSVSVSGHKFVG-CPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRG 359 (470)
T ss_pred ccc-CCC--cCccEEEECCccccC-CCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHH
Confidence 111 111 122235667889987 668899998887655443221111 11112222222222222211125677
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEE
Q 014172 357 VSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLF 393 (429)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~ 393 (429)
+.++.+..-++.+++.+.|++. |+. +..|.....+|
T Consensus 360 ~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f 396 (470)
T PLN02263 360 FQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEE
Confidence 8888888888999999999988 554 44566655333
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-12 Score=131.97 Aligned_cols=276 Identities=13% Similarity=0.098 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----CCcEEEecChHHHHHHHHHHhcC--------
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-------- 177 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-----~~~i~~t~G~~~al~~~l~~l~~-------- 177 (429)
..+.+.+...+......|...+...++.+.+.+|+.+.+|.+-. ...-++|+|+++++..++.+..+
T Consensus 97 ~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~ 176 (490)
T PLN02880 97 GFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGK 176 (490)
T ss_pred HHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcc
Confidence 34444555555443344555567889999999999999996421 02367889999888776655421
Q ss_pred ---CCCEEEEcCCCCCChHHHHHHcCCE---EEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCC
Q 014172 178 ---PGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 178 ---~gd~Vlv~~p~y~~~~~~~~~~g~~---~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~ 245 (429)
+.-.|++++-+|.+...++..+|+. ++.||++..+++.+|++.|++++.+ .+-+|+-+...-.||.+-
T Consensus 177 ~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD 256 (490)
T PLN02880 177 NALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVD 256 (490)
T ss_pred cccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccC
Confidence 1124667888999999999999994 7889987656778999999999864 134455567778899999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc-cCCCCCCceEEEeccChhcccccceeeEEEcCH--HHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVA 322 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~--~~~~ 322 (429)
| +++|+++|++| |+|+++|.+|+.+..... .+. .+.+...-.-+..+++|.+. ....+|+++..+ .+++
T Consensus 257 p---l~eI~~i~~~~-~iwlHVDaA~gg~~~~~~---~~~~~l~gie~aDSit~d~HKwl~-~P~~~g~llvr~~~~l~~ 328 (490)
T PLN02880 257 P---LLELGKIAKSN-GMWFHVDAAYAGSACICP---EYRHYIDGVEEADSFNMNAHKWFL-TNFDCSLLWVKDRNALIQ 328 (490)
T ss_pred c---HHHHHHHHHHc-CCEEEEehhhHHHHHhCH---HHHHHhcCchhcCEEEECchhhcC-CCccEEEEEEeCHHHHHH
Confidence 9 99999999999 999999999997643211 111 11221233467888999996 667889888753 2223
Q ss_pred HHHHHhhccc----------------C-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 323 ACNKIQSQFT----------------S-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 323 ~l~~~~~~~~----------------~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
.+..-..+.. . +...+....+-..|.. .+.+.+.++.+..-+..+++.+.+++.+++++..
T Consensus 329 ~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~--~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~ 406 (490)
T PLN02880 329 SLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRL--YGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVT 406 (490)
T ss_pred HHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHH--hCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEec
Confidence 2221110000 0 0011111111111222 1456677777777788999999999888888875
Q ss_pred C-CceEEEEEecC
Q 014172 386 P-QGAFYLFIDFS 397 (429)
Q Consensus 386 p-~~~~~~~~~l~ 397 (429)
| +.++ +.++++
T Consensus 407 ~~~~~i-v~Fr~~ 418 (490)
T PLN02880 407 PRIFSL-VCFRLV 418 (490)
T ss_pred CCceEE-EEEEEe
Confidence 4 5555 556665
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=130.77 Aligned_cols=319 Identities=16% Similarity=0.118 Sum_probs=183.0
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|.. .++. +|++.+++.+.+.+.. |.......+....+++.+.+..+ ..+.+++++++++++.
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~lae~l~~~~~---~~~~v~f~~sGseA~e 119 (451)
T PRK07678 45 QGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLS--YFPLTQSHEPAIKLAEKLNEWLG---GEYVIFFSNSGSEANE 119 (451)
T ss_pred CCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcC--ccccccCCHHHHHHHHHHHHhCC---CCCEEEEeCCcHHHHH
Confidence 5788999988752 3343 7899999999887532 21111123445566666665543 2358999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCCC--CC-----CC---H
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISEN--FL-----LD---P 218 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~~--~~-----~d---~ 218 (429)
.+++.... +| ..|+...-+|.+....+... |. .+..+|...... +. -+ +
T Consensus 120 ~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (451)
T PRK07678 120 TAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECV 199 (451)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHH
Confidence 88887531 23 57888888888765443322 11 112222211000 00 01 2
Q ss_pred HHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc
Q 014172 219 KVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+.+++.+. +++.+|++...+.-.|.+ .+++.+++|.++|++| |+++|.||++.+|...|.. ..+..+.-..|
T Consensus 200 ~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~~~~~~gv~PD- 276 (451)
T PRK07678 200 KEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKH-GALLISDEVICGFGRTGKA-FGFMNYGVKPD- 276 (451)
T ss_pred HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhcCCcCchh-HHHHhcCCCCC-
Confidence 23555553 345566665445445655 5677899999999999 9999999999876433321 11111211112
Q ss_pred eEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
+-+|+|.+| .| +.+|.+++++++.+.+... ....+++.++++.+++.+.|+.-. .++.+++..+.-+.
T Consensus 277 ---ivt~gK~lg-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~-~~~~~~~~~~~g~~ 351 (451)
T PRK07678 277 ---IITMAKGIT-SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIME-NENLIERSAQLGEL 351 (451)
T ss_pred ---EEEeecccc-cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 446899998 67 6999999999998887531 234566778888888888887511 01222333333333
Q ss_pred HHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+.+.+++.+.+.-+...|.| +-+.+.......... .......++..|+++ ||.+
T Consensus 352 l~~~l~~~~~~~~~v~~vrg~Gl~-~~i~~~~~~~~~~~~--~~~~a~~i~~~l~~~-Gv~~ 409 (451)
T PRK07678 352 LLEQLKEELGEHPLVGDIRGKGLL-VGIELVNDKETKEPA--DNDKVASVVAACKEK-GLII 409 (451)
T ss_pred HHHHHHHHHhcCCCEEEEEeeceE-EEEEEecCCcccCcC--chHHHHHHHHHHHHC-CcEE
Confidence 344444444444333334455544 445542110000000 001145677777776 8865
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-12 Score=131.54 Aligned_cols=319 Identities=12% Similarity=0.081 Sum_probs=184.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+.+||+..|. ..++- +|.+.+++.+.+.+... +... .+..+....+++.+.+.+.. ...+.++++++|++++
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~-~~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~f~~SGsEA~ 164 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPF-YHSFWNRTTKPSLDLAKELLEMFTA-RKMGKVFFTNSGSEAN 164 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccc-eecccccCcHHHHHHHHHHHhhcCC-CCCCEEEEeCChHHHH
Confidence 578899998875 34444 78999999999876321 1111 23456667777776654321 1235799999999999
Q ss_pred HHHHHHhc-------CCC-CEEEEcCCCCCChHH-HHHHcCCE------------EEEecCCCCCC----C-------CC
Q 014172 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISEN----F-------LL 216 (429)
Q Consensus 169 ~~~l~~l~-------~~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~----~-------~~ 216 (429)
..+++... .++ ..|+..+-+|.+... .+...|.. +..++.+.... + ..
T Consensus 165 e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 244 (504)
T PLN02760 165 DTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTR 244 (504)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHH
Confidence 99998763 133 578888877776543 33333321 11222110000 0 00
Q ss_pred CHHHHHhhcc----cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 217 DPKVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 217 d~e~l~~~l~----~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
..+++++.+. +++.+|++.......|.+. +.+.+++|.++|++| |+++|.||++.+|-..|... ....+.-..
T Consensus 245 ~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~TGfGRtG~~~-a~e~~gv~P 322 (504)
T PLN02760 245 LADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKY-DILFIADEVICAFGRLGTMF-GCDKYNIKP 322 (504)
T ss_pred HHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEecchhhCCcccchhh-HHHhcCCCC
Confidence 1244666553 2344555554555567654 677899999999999 99999999997763333211 111111111
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
| +.+|+|.+| .| ..+|.+++++++++.+... ....+++.++++.+++.+.|+. .++ +++.+.
T Consensus 323 D----ivtlgK~lg-gG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~---i~~--~~l~~~ 392 (504)
T PLN02760 323 D----LVSLAKALS-SAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKI---YKE--RNIPEH 392 (504)
T ss_pred c----EEEeccccc-CCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHH---HHh--CCHHHH
Confidence 2 677999998 66 4899999999999887531 2344666788888888888875 121 133444
Q ss_pred HHHHHHHHHHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++-+++.+.|+++ +-+.-+...|.| +-+.+....... +.+.. ..-...+.+.|+++ ||.+
T Consensus 393 ~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~-~gie~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-Gvl~ 458 (504)
T PLN02760 393 VNKIAPRFQDGIKAFSGSPIIGEIRGTGLI-LGTEFVDNKSPN-DPFPAEWGVGAYFGAECKKR-GMLV 458 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCeeeEEeCceE-EEEEEecCCccc-ccccchhHHHHHHHHHHHhC-CcEE
Confidence 444555555555443 222223445544 455553210000 00000 00134577777766 8764
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-12 Score=129.82 Aligned_cols=320 Identities=13% Similarity=0.123 Sum_probs=185.3
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|.. .++- +|++.+++.+++.+..+.........+.+..+++.+.+.... ..+.+++++++++++
T Consensus 43 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGSEAv 120 (459)
T PRK05965 43 ASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPG--SLNHVYFTLGGSDAV 120 (459)
T ss_pred CCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCC--CcCEEEEeCChhHHH
Confidence 35788999988753 3333 789999999998753211100011234555677776654321 346899999999999
Q ss_pred HHHHHHhcC-------CC-CEEEEcCCCCCChHHHH-HHcCC------------EEEEecCCCC--CCCCCC--------
Q 014172 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMA-RIADA------------TPVILPTRIS--ENFLLD-------- 217 (429)
Q Consensus 169 ~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~-~~~g~------------~~~~v~~~~~--~~~~~d-------- 217 (429)
+.+++.... ++ .+|+....+|.+....+ ...|. .+..++.... ..+.-|
T Consensus 121 e~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (459)
T PRK05965 121 DSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAAS 200 (459)
T ss_pred HHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHH
Confidence 999887531 22 56888888888764322 22111 1122322110 001113
Q ss_pred HHHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
++.+++.+. ++..+|++...+...|.+ .+.+.+++|.++|++| |+++|.||+..+|...|.. .....+.-..|
T Consensus 201 ~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~-gillI~DEV~tGfGRtG~~-~a~~~~gv~PD 278 (459)
T PRK05965 201 VAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACREL-GILFVADEVITGFGRTGPL-FACEAEGVVPD 278 (459)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhccCccCchh-hhHhhcCCCCC
Confidence 256677664 345566665556666764 5677899999999999 9999999999987433321 11111111112
Q ss_pred ceEEEeccChhccccc-ceeeEEEcCHHHHHHHHH-------HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~-------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
+-+++|.++ .| ..+|.+++++++.+.+.. .....+++.++++.+++.+.|+. .++ +++.+..
T Consensus 279 ----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~---l~~--~~l~~~~ 348 (459)
T PRK05965 279 ----LMTVAKGLT-SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRL---YHE--GGLLANG 348 (459)
T ss_pred ----eEEechhhc-cCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHH---HHh--ccHHHHH
Confidence 555899998 88 599999999999887753 12334566788888888888864 111 1233334
Q ss_pred HHHHHHHHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 365 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 365 ~~~r~~l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
++.-+++.+.|++ .+.+.-++..|-| +-+.+....... ..+.. ..-...+.+.++++ ||.+
T Consensus 349 ~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~-~gie~~~~~~~~-~~~~~~~~~~~~i~~~~~~~-Gll~ 413 (459)
T PRK05965 349 QKAGPRFAAGLDALRAHPLVGDVRGRGLL-GALELVADKATK-TPFDAALDPADRIFDRAYAN-GLVF 413 (459)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEeecceE-EEEEEecccccc-CCCCchhHHHHHHHHHHHhC-CeEE
Confidence 4444555555544 3333333444544 445553210000 00000 00134677777765 8865
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-12 Score=128.82 Aligned_cols=276 Identities=12% Similarity=0.073 Sum_probs=182.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----CCcEEEecChHHHHHHHHHHhcC--------
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-------- 177 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-----~~~i~~t~G~~~al~~~l~~l~~-------- 177 (429)
..+.+.+..++......|...++..++.+.+.+|+.+.+|.+-. ...-++++|++++...++.+..+
T Consensus 145 ~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~ 224 (539)
T PLN02590 145 GFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGK 224 (539)
T ss_pred HHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcc
Confidence 44555555555444455666778899999999999999996521 13457788999888776665322
Q ss_pred ---CCCEEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCCCCHHHHHhhcccC------CcEEEEcCCCCCccCCC
Q 014172 178 ---PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVY 245 (429)
Q Consensus 178 ---~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~l~~~------~~~i~l~~p~NPtG~~~ 245 (429)
+.-.|++++.+|.+...+++.+|+ +++.||++..+++.+|++.|+++|... +-+|+-+...-.||.+=
T Consensus 225 ~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiD 304 (539)
T PLN02590 225 TLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVD 304 (539)
T ss_pred cCCCCEEEEecCCchHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccC
Confidence 112566788899999999999998 588999876567889999999999642 34555566677899998
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc-CCCCCCceEEEeccChhcccccceeeEEEcCH--HHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVA 322 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~--~~~~ 322 (429)
| +++|+++|++| ++|+.+|.+|+.+..--. .... +.+.....=+...++|.+. ....+|.++..+ .+.+
T Consensus 305 p---l~~Ia~i~~~~-g~WlHVDaA~GG~al~~~---~~r~~~~Gie~ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~ 376 (539)
T PLN02590 305 P---LVPLGNIAKKY-GIWLHVDAAYAGNACICP---EYRKFIDGIENADSFNMNAHKWLF-ANQTCSPLWVKDRYSLID 376 (539)
T ss_pred C---HHHHHHHHHHh-CCeEEEecchhhhhhcCh---hhHHHhcCCccCCEEEECchhhcC-cCcCEEEEEecCHHHHHH
Confidence 8 99999999999 999999999998642211 1111 1111122245667899986 667788877654 3333
Q ss_pred HHHHHhhcc----------------cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-
Q 014172 323 ACNKIQSQF----------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE- 385 (429)
Q Consensus 323 ~l~~~~~~~----------------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~- 385 (429)
.+.....+. +...+.- ..++...+.....+.+.++++.++.-+..+++.+.+++.+++++..
T Consensus 377 a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr-~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~ 455 (539)
T PLN02590 377 ALKTNPEYLEFKVSKKDTVVNYKDWQISLSRR-FRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT 455 (539)
T ss_pred HhhcCHHHhCCcccccccCCCccccCCCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC
Confidence 332111000 1111111 1222222221112467788888888889999999999988898865
Q ss_pred CCceEEEEEec
Q 014172 386 PQGAFYLFIDF 396 (429)
Q Consensus 386 p~~~~~~~~~l 396 (429)
|+-+. +.+++
T Consensus 456 ~~l~i-VcFr~ 465 (539)
T PLN02590 456 RYFSL-VCFRL 465 (539)
T ss_pred CceEE-EEEEe
Confidence 44444 44554
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=125.75 Aligned_cols=247 Identities=13% Similarity=0.070 Sum_probs=151.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+..||+..|. ..++. +|.+.+++.+++++..+ ++.. .+..+....+++.+.+..+. ..+.+++++++++++
T Consensus 52 dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~-~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA~ 128 (460)
T PRK12403 52 DGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPY-YNMFFHTTHPAVIELSELLFSLLPG--HYSHAIYTNSGSEAN 128 (460)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCC-eecccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCcHHHH
Confidence 578899987775 23443 78999999999876321 1111 23445666677777655431 236899999999999
Q ss_pred HHHHHHhc-------CCCCE-EEEcCCCCCChH-HHHHHcCCE-----------EEEecCCCC--CCCCC--------CH
Q 014172 169 LQAVLAVC-------SPGDE-VIIPAPFWVSYP-EMARIADAT-----------PVILPTRIS--ENFLL--------DP 218 (429)
Q Consensus 169 ~~~l~~l~-------~~gd~-Vlv~~p~y~~~~-~~~~~~g~~-----------~~~v~~~~~--~~~~~--------d~ 218 (429)
..+++... ++++. |+...-+|.+.. ......|.+ +..+|.... .++.. +.
T Consensus 129 e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 208 (460)
T PRK12403 129 EVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAA 208 (460)
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHH
Confidence 99988874 23333 445555666543 333333322 222321100 00011 13
Q ss_pred HHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc
Q 014172 219 KVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+.+++.+. +++.+|++...+.-.|.+ .+.+.+++|.++|++| |+++|.||++..|-..|... ....+.-..
T Consensus 209 ~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~~~-a~e~~gv~P-- 284 (460)
T PRK12403 209 LQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQY-DVLLCADEVIGGFGRTGEWF-AHEHFGFEP-- 284 (460)
T ss_pred HHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchhh-hhhhcCCCC--
Confidence 45555542 234556665556656765 4677899999999999 99999999998763333211 111121111
Q ss_pred eEEEeccChhcccccc-eeeEEEcCHHHHHHHHHH----hhcccCCCchHHHHHHHHHHhc
Q 014172 294 TLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~----~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
.|+ +|+|.++ .|. .+|.+++.+++.+.+... ....+++.++++.+++.+.|+.
T Consensus 285 Div--~~gK~lg-gG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~ 342 (460)
T PRK12403 285 DTL--SIAKGLT-SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKA 342 (460)
T ss_pred CeE--EEccccc-ccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence 233 4999998 784 899999999988877531 1234556788888888888875
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-12 Score=126.02 Aligned_cols=247 Identities=15% Similarity=0.149 Sum_probs=158.1
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+.+||+..|. ..++- +|++.+++.+.+.+.. .+.+ .-..+.+..+++.+.+.... ..+.|+++++++++.
T Consensus 50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~-~~~~-~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGsEAv 125 (451)
T PRK06062 50 YEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLC-TVAP-AHANDARSEAARLIAERAPG--DLSKVFFTNGGADAN 125 (451)
T ss_pred CCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcC-CcCC-ccCCHHHHHHHHHHHHhCCC--CCCEEEEcCChHHHH
Confidence 3578899998886 33444 6899999999887632 2212 22345566677777654331 236899999999999
Q ss_pred HHHHHHhcC-CC-CEEEEcCCCCCChHHHHHHc-CCE-----------EEEecCCCCC--CCC--CC-------HHHHHh
Q 014172 169 LQAVLAVCS-PG-DEVIIPAPFWVSYPEMARIA-DAT-----------PVILPTRISE--NFL--LD-------PKVLES 223 (429)
Q Consensus 169 ~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~~-g~~-----------~~~v~~~~~~--~~~--~d-------~e~l~~ 223 (429)
..+++.... .| .+|+...-+|.+....+... |.. +..++..... .|. -| ++.+++
T Consensus 126 e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~ 205 (451)
T PRK06062 126 EHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLER 205 (451)
T ss_pred HHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHH
Confidence 999887532 23 67888888888765433322 211 1222211000 010 02 567777
Q ss_pred hcc----cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEe
Q 014172 224 KLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (429)
Q Consensus 224 ~l~----~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (429)
.+. +++.+|++...+...|.+. +.+.+++|.++|++| |+++|.||++..|...|.. .....+.-..| +.
T Consensus 206 ~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~-g~lLI~DEV~tGfGRtG~~-~a~~~~gv~PD----i~ 279 (451)
T PRK06062 206 VIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRH-GIVLIADEVMAGFGRTGKW-FAIEHFGVVPD----LI 279 (451)
T ss_pred HHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeeccccCCCcCcHH-HHHHhcCCCCC----ee
Confidence 774 2345666654555567664 677899999999999 9999999999985333321 01111111122 55
Q ss_pred ccChhcccccc-eeeEEEcCHHHHHHHHHH--hhcccCCCchHHHHHHHHHHhc
Q 014172 299 GFSKAFAMTGW-RLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 299 S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~--~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
+|+|.++ .|. .+|.+++.+++++.+... ....+++.++++.+++.+.|+.
T Consensus 280 t~gK~lg-gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 332 (451)
T PRK06062 280 TFAKGVN-SGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINA 332 (451)
T ss_pred eechhhh-cCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 7999998 784 899999999998887532 2334566788888888888874
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-12 Score=128.06 Aligned_cols=307 Identities=13% Similarity=0.058 Sum_probs=183.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|. ..++- +|++.+++.+.+.+..+ +....-..+....+++.+.+... -..+.|+++++++++++
T Consensus 42 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGseAve 118 (429)
T PRK06173 42 DGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSH-IMFGGFTHEPAVELAQKLLEILP--PSLNKIFFADSGSVAVE 118 (429)
T ss_pred CCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCC-ccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCCchHHHH
Confidence 578899998775 33333 68999999998875321 11111123455566666655432 12368999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCCCCCCC-----CCHHHHH
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRISENFL-----LDPKVLE 222 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~~~~~-----~d~e~l~ 222 (429)
.+++.... +| .+|+....+|.+....+. ..|. .+..+|... ..+. -+++.++
T Consensus 119 ~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~l~ 197 (429)
T PRK06173 119 VAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPS-IKFGEEWNDEAIEPLQ 197 (429)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCC-cccchhHHHHHHHHHH
Confidence 98887541 33 578888888887532221 1111 112222210 0000 1356677
Q ss_pred hhcc---cCCcEEEEcCC-CCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 223 SKLT---EKSRLLILCSP-SNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 223 ~~l~---~~~~~i~l~~p-~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
+.+. +++.+|++... +.-.|.. .+++.+++|.++|++| |+++|.||++.++...|... ....+.-..| |+
T Consensus 198 ~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~~~-a~~~~gv~PD--iv- 272 (429)
T PRK06173 198 DLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQY-GVLLIFDEIATGFGRTGKLF-ALEHAGVVPD--IM- 272 (429)
T ss_pred HHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHc-CCeEEecchhcCCCcCCcch-HHHhcCCCCC--EE-
Confidence 7774 34556655542 6666765 6788899999999999 99999999997753333211 1111211112 33
Q ss_pred eccChhccccc-ceeeEEEcCHHHHHHHHHH-----hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 014172 298 NGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (429)
Q Consensus 298 ~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-----~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l 371 (429)
+|+|.++ .| ..++.+++++++.+.+... ....+++.++++.+++.+.|+. .++. ..++..+++-+++
T Consensus 273 -~~gK~l~-gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~---i~~~--~~~~~~~~~g~~l 345 (429)
T PRK06173 273 -CIGKALT-GGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRL---LLES--PWQQNIQRIEAQL 345 (429)
T ss_pred -Eeehhhh-CCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHH---HHhC--CHHHHHHHHHHHH
Confidence 4999997 77 4788899999998877531 1222445678888888888764 1211 2345555556666
Q ss_pred HHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 372 VKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 372 ~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.|+++ +.+.-++..| +.+-+.+... .+...+++.|+++ ||.+
T Consensus 346 ~~~L~~~~~~~~v~~vRg~G-l~~~iel~~~-----------~~~~~i~~~l~e~-Gi~v 392 (429)
T PRK06173 346 KQELAPAAEFDSVAEVRVLG-AIGVVEMKEP-----------VNMATLQPRFVEH-GIWV 392 (429)
T ss_pred HHHHHHhhcCCCeeeeeccc-eEEEEEeCCc-----------ccHHHHHHHHHHC-CeEE
Confidence 6666543 2232223444 4455666432 1356888888776 8875
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-12 Score=116.58 Aligned_cols=173 Identities=16% Similarity=0.202 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 213 (429)
+.++.+.+++++ .-+.+-+|+|+.++-+.++.++|++||.|++...+|.+..-+++.+|+++..||-.....
T Consensus 63 I~~F~~dlaeFl--------g~D~~R~t~GARe~KfavMhal~~~gd~vV~D~~aHYttyvAAEragl~v~eVp~tg~Pe 134 (382)
T COG1103 63 IKDFLEDLAEFL--------GMDEVRVTAGAREAKFAVMHALCKEGDWVVVDSLAHYTTYVAAERAGLNVAEVPNTGYPE 134 (382)
T ss_pred HHHHHHHHHHHh--------CCceeeecccchhhHHHHHHHhccCCCEEEEcCcchHHHHHHHHhcCCeEEecCCCCCCc
Confidence 356777788876 457889999999999999999999999999999999888889999999999999655556
Q ss_pred CCCCHHHHHhhccc-------CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc
Q 014172 214 FLLDPKVLESKLTE-------KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (429)
Q Consensus 214 ~~~d~e~l~~~l~~-------~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~ 286 (429)
+.+++|...+.|++ .+.+.++++|..-.|+..+ .+.++++|+++ ++.++...+|.- |..+.+...
T Consensus 135 y~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D---akkva~ic~e~-gvPlllN~AYt~----Grmpvs~ke 206 (382)
T COG1103 135 YKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD---AKKVAKICREY-GVPLLLNCAYTV----GRMPVSGKE 206 (382)
T ss_pred eEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh---hHHHHHHHHHc-CCceEeecceee----ccccccccc
Confidence 88899888777742 3667788999888999988 88999999999 999999999986 445555555
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~ 327 (429)
+ +..++++|-+|+++ +.-.+|.+....++.+.+.+.
T Consensus 207 ~----g~DFiVgSGHKsmA-As~PiGvl~~~eE~ae~V~r~ 242 (382)
T COG1103 207 I----GADFIVGSGHKSMA-ASAPIGVLAMSEEWAEIVLRR 242 (382)
T ss_pred c----CCCEEEecCccchh-ccCCeeEEeehhHHHHHHHhh
Confidence 4 34599999999998 666899999999988877554
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-12 Score=133.29 Aligned_cols=276 Identities=16% Similarity=0.136 Sum_probs=179.0
Q ss_pred CCCCCCC---CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC--------CCCEEEEcCCCCCChH
Q 014172 125 FTRYTPN---AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYP 193 (429)
Q Consensus 125 ~~~Y~~~---~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--------~gd~Vlv~~p~y~~~~ 193 (429)
.+-|.|. +|..++...+..++.+..|.+ .--+..+|++++-...++++.. ..+.|+++.-.|....
T Consensus 516 ~hPyqPe~~sqG~lq~i~elq~~l~eltGmd---~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnP 592 (939)
T TIGR00461 516 IHPFQPSNQVEGYQELIAQLEKWLCSITGFD---AISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNP 592 (939)
T ss_pred cCCCCchHHhHHHHHHHHHHHHHHHHHHCCC---CcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCH
Confidence 4455543 677888899999999988854 2223444555544434444321 2357999999998888
Q ss_pred HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccC
Q 014172 194 EMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270 (429)
Q Consensus 194 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Dea 270 (429)
..++..|.+++.++.+. ++.+|+++|++++++ ++++|++++|+| +|.+-+ .+++|+++|+++ |.++++|.+
T Consensus 593 asa~~~G~~Vv~V~~d~--~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~--~I~eI~~iah~~-G~~v~VDgA 666 (939)
T TIGR00461 593 ASAAMAGMQVVPVNCDQ--DGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEP--TIQHACDIVHSF-GGQVYLDGA 666 (939)
T ss_pred HHHHHCCCEEEEeccCC--CCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceecc--cHHHHHHHHHHc-CCEEEEEec
Confidence 88999999999999863 456999999999974 889999999999 787754 289999999999 899999999
Q ss_pred CcccccCCCCCCccccCCCCCCceEEEeccChhcc----cccceeeEEEcCHHHHHHHHHH---------------hhcc
Q 014172 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA----MTGWRLGYIAGPKHFVAACNKI---------------QSQF 331 (429)
Q Consensus 271 y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~----~~G~R~G~v~~~~~~~~~l~~~---------------~~~~ 331 (429)
+..-.. + ..-++..+-+++++|.+|+|+ ..|..+|++.+.+++...+-.. ....
T Consensus 667 q~~al~-~------l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s 739 (939)
T TIGR00461 667 NMNAQV-G------LTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVS 739 (939)
T ss_pred ChhhCC-C------CCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCcccccccc
Confidence 853110 0 111233466799999999775 3566789998887655443210 0000
Q ss_pred cCCCch-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC--CceEE--EEEecCCccCCcccC
Q 014172 332 TSGASS-ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP--QGAFY--LFIDFSTYYGSEAEG 406 (429)
Q Consensus 332 ~~~~~~-~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p--~~~~~--~~~~l~~~~~~~~~~ 406 (429)
+.+.+. .....+..++.. .+.+.+++..+.--.+..++.++|++ +.++.-+ .+.+| +.++++.. ....|
T Consensus 740 ~~~~g~a~~~l~a~~yi~~--lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~--~~~~g 813 (939)
T TIGR00461 740 AAPYGSASILPISWMYIKM--MGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPL--KAKTG 813 (939)
T ss_pred ccccCcHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccch--hhhcC
Confidence 101111 111222223222 14677888888888899999999987 3444332 22222 22455421 00001
Q ss_pred CCCCCChHHHHHHHHHhCCee
Q 014172 407 FGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 407 ~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.+..+++++|++. |+.
T Consensus 814 ----~~~~dIakrL~d~-G~h 829 (939)
T TIGR00461 814 ----IEAIDVAKRLQDY-GFH 829 (939)
T ss_pred ----CCHHHHHHHHHhC-Cee
Confidence 3688999999987 653
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=125.61 Aligned_cols=315 Identities=14% Similarity=0.122 Sum_probs=181.8
Q ss_pred cCCCeEEcCCC-CCCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHH
Q 014172 93 AGVSVIRLAAG-EPDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (429)
Q Consensus 93 ~g~~~i~L~~g-~~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 170 (429)
.|+..||+..+ ...++ .+|++.+++.+.+.+. .+....-..+....+++.+.+..+. ..+.+++++++++++..
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~--~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGseAve~ 145 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKL--PFSPRRFTNETAIECAEKLTEIAGG--ELNRVLFAPGGTSAIGM 145 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhC--CCccCccCCHHHHHHHHHHHHhCCC--CCCEEEECCCcHHHHHH
Confidence 57889998733 22344 3789999999998752 2222212345666777777665431 23689999999999998
Q ss_pred HHHHhcC-C-CCEEEEcCCCCCChHH-HHHHcCCE------------EEEecCCCCC--CCC-C------CHHHHHhhcc
Q 014172 171 AVLAVCS-P-GDEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISE--NFL-L------DPKVLESKLT 226 (429)
Q Consensus 171 ~l~~l~~-~-gd~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~--~~~-~------d~e~l~~~l~ 226 (429)
+++.... . ..+|+...-+|.+... .....|.. +..+|..... .+. . +++.+++.+.
T Consensus 146 AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 225 (459)
T PRK06082 146 ALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIE 225 (459)
T ss_pred HHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHh
Confidence 8876532 2 3678888887777543 33233221 1222211000 010 0 1345676664
Q ss_pred --cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 227 --EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 227 --~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
.+..+|++...++..+.+.+.+.+++|.++|++| |+++|.||++.+|...|.. .....+.-..| |+ +|+|.+
T Consensus 226 ~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tG~GRtG~~-fa~e~~gv~PD--iv--~~gKgl 299 (459)
T PRK06082 226 KEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKH-NVLLIIDEIPNGMGRTGEW-FTHQAYGIEPD--IL--CIGKGL 299 (459)
T ss_pred cCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhCCCccchh-hHhHhhCCCCC--EE--Eecccc
Confidence 2455555554555545577888999999999999 9999999999876333321 11111111112 33 489999
Q ss_pred cccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CC
Q 014172 305 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LE 379 (429)
Q Consensus 305 ~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l~ 379 (429)
+ .| ..+|.+++.+++...........+++.++++.+++.+.|+. .++ +++.+..+++-+++.+.|++ .+
T Consensus 300 ~-gG~~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~---l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~ 373 (459)
T PRK06082 300 G-GGLVPIAAMITKDKYNTAAQISLGHYTHEKSPLGCAAALATIEV---IEQ--EGLLEKVKADSQFMRERLLEMKAKYP 373 (459)
T ss_pred c-CCCCcceEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8 67 58999999988764432111124666788888888888874 111 13444455555555555544 33
Q ss_pred CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.-++..|.| +-+.+....... . ........+...++++ ||.+
T Consensus 374 ~i~~vrG~Gl~-~~ve~~~~~~~~-~--~~~~~~~~~~~~~~~~-Gvl~ 417 (459)
T PRK06082 374 LIGDVRGIGLL-WGVELVTDRHTK-E--RAYDEAEAVLYRCLNN-GLSF 417 (459)
T ss_pred Ceeeeeeccce-eEEEEccCcccc-C--ccHHHHHHHHHHHHhC-CCEE
Confidence 23334455544 455553210000 0 0000134677777765 8764
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.8e-12 Score=126.36 Aligned_cols=320 Identities=13% Similarity=0.063 Sum_probs=183.5
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++- +|.+.+++.+++.+............+.+..+++.+.+..+. .-+.|++++++++++
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseAv 122 (460)
T PRK06105 45 DAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPV--PMSKVFFTNSGSEAN 122 (460)
T ss_pred CCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHH
Confidence 3578899998885 33443 789999999998763211111112345556677777655431 236899999999999
Q ss_pred HHHHHHhc------C-CC-CEEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCCCCCC-----------C
Q 014172 169 LQAVLAVC------S-PG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISENFL-----------L 216 (429)
Q Consensus 169 ~~~l~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~~~-----------~ 216 (429)
..+++... . +| .+|+...-+|.+....+.. .|. .+..++......+. .
T Consensus 123 e~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 202 (460)
T PRK06105 123 DTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATR 202 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHH
Confidence 99988742 1 23 5788888877765433221 111 11222221100000 0
Q ss_pred CHHHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 217 DPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 217 d~e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
..+++++.+. ++..+|++...+.-.|.. .+.+.+++|.++|++| |+++|.||++..|-..|.. ..+..+.-..
T Consensus 203 ~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~-~~llI~DEv~tG~GRtG~~-f~~~~~~v~P 280 (460)
T PRK06105 203 LANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKY-DILLVADEVICGFGRTGNM-FGCETFGIKP 280 (460)
T ss_pred HHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCeEEEeccccCCCcCchh-hhHHhcCCCC
Confidence 1355666663 245566665556556765 5788899999999999 9999999999776333321 1111111111
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHh-------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~-------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
| +.+|+|.++ .| ..+|.+++++++.+.+.... ...+++.++++.+++.+.|+. .++ +++.+.
T Consensus 281 D----i~~~gK~lg-gG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~---i~~--~~l~~~ 350 (460)
T PRK06105 281 D----ILVMSKQLS-SSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAI---IEE--RDLVGN 350 (460)
T ss_pred C----eeeeecccc-cCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHH
Confidence 2 557999998 66 58999999999988775321 234556788888888888764 111 123444
Q ss_pred HHHHHHHHHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCCCC-ChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~Ll~~~gV~v 428 (429)
.++.-+++.+.|++ .+.+.-+...| +++-+.+...... ...+.... -...++..++++ ||.+
T Consensus 351 v~~~g~~l~~~L~~l~~~~~v~~vrG~G-l~~gie~~~~~~~-~~~~~~~~~~a~~i~~~~~~~-Gvl~ 416 (460)
T PRK06105 351 AAERGARLQARLRALADHPLVGEVRGVG-LIAAVELVADKAT-KTPFEPPGKVGARANAAAHEH-GVIS 416 (460)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEecc-eEEEEEEecCccc-CCCCCchhHHHHHHHHHHHHC-CeEE
Confidence 44444555555544 33233334454 4344555211000 00000000 124677777665 8875
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-11 Score=124.50 Aligned_cols=313 Identities=17% Similarity=0.159 Sum_probs=179.3
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++- +|.+.+++.+.+.+..+ ........+....+++.+.+..+ ...+.++++++++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~SGsEA~e 127 (457)
T PRK05639 51 DGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQH-SMIGYTHSERAIRVAEKLAEISP--IENPKVLFGLSGSDAVD 127 (457)
T ss_pred CCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccc-cccCccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHH
Confidence 578899998886 33444 78999999998875321 11111113444556666655433 12368999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChHHHHHH-cCC-------------EEEEecCCCCCC--CC----CCH--------H
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISEN--FL----LDP--------K 219 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~--~~----~d~--------e 219 (429)
.+++... .....|+....+|.+....+.. .|. .++.+|.+.... +. -+. +
T Consensus 128 ~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (457)
T PRK05639 128 MAIKVSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLD 207 (457)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHH
Confidence 9988753 2236788888888875543322 221 133444321100 00 022 2
Q ss_pred HHHhhc------ccCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 220 VLESKL------TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 220 ~l~~~l------~~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
.+++.+ ..++.+|++...+.-.|. ..+.+.+++|.++|++| |+++|.||++.+|...|.. .....+.-..|
T Consensus 208 ~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~-g~llI~DEv~tG~GrtG~~-~a~~~~gv~PD 285 (457)
T PRK05639 208 YLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH-GILLVMDEVQTGIGRTGKW-FASEWFEVKPD 285 (457)
T ss_pred HHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCcCchH-HHHHhcCCCCC
Confidence 344443 234556666545555676 44677899999999999 9999999999875333321 11111111112
Q ss_pred ceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (429)
|++ |+|.++ .|..+|.+++++++++.. ......+++.++++.+++.+.|+. .++ ++..+..+++-+++.
T Consensus 286 --iv~--~gK~l~-gG~pi~av~~~~~i~~~~-~~~~~~T~~g~p~~~aaa~a~l~~---l~~--~~l~~~~~~~g~~l~ 354 (457)
T PRK05639 286 --LII--FGKGVA-SGMGLSGVIGRKELMDLT-SGSALLTPAANPVISAAAEATLEI---IEE--ENLLKNALKVGEFIK 354 (457)
T ss_pred --EEE--echhhc-CCCcceeEEehHHHHhhc-CCCcccCCCcCHHHHHHHHHHHHH---HHH--ccHHHHHHHHHHHHH
Confidence 333 899998 789999999999998732 211224556777777888887764 111 123333334445555
Q ss_pred HHhcc----CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 373 KSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 373 ~~L~~----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.|++ .+-+.-++..|-| +-+.+-.... .........+.+.|+++ ||.+
T Consensus 355 ~~L~~l~~~~~~~~~VrG~Gl~-~gve~~~~~~-----~~~~~~~~~~~~~~~~~-Gv~~ 407 (457)
T PRK05639 355 KRLLEMKESFEVIGDVRGKGLM-IGVEIVKENG-----KPDPELTGKICWRAFEL-GLIL 407 (457)
T ss_pred HHHHHHHHhCCCEEeeccceeE-EEEEEecCCC-----CCCHHHHHHHHHHHHhC-CeEE
Confidence 55544 3222223445544 4444421100 00001245677777776 8875
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-12 Score=125.09 Aligned_cols=309 Identities=15% Similarity=0.083 Sum_probs=181.9
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++- +|++.+++.+.+++..+.... .-..+....+++.+.+..+. ..+.+++++++++++
T Consensus 37 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~-~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA~ 113 (422)
T PRK05630 37 EDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFG-GLTHEPAIKLTRKLLNLTDN--GLDHVFYSDSGSVSV 113 (422)
T ss_pred CCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccC-CcCCHHHHHHHHHHHhhCCC--CcCEEEEeCCcHHHH
Confidence 3578899998886 33444 789999999998763211100 01234455566666554321 236899999999999
Q ss_pred HHHHHHhcC-------CC-CEEEEcCCCCCChHHHHHH-cCC-------------EEEEecCCCCCCCCC-C----HHHH
Q 014172 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTRISENFLL-D----PKVL 221 (429)
Q Consensus 169 ~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~~~~~~~~-d----~e~l 221 (429)
+.+++.... ++ .+|+....+|.+....+.. .+. ....+|......... + .+.+
T Consensus 114 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 193 (422)
T PRK05630 114 EVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSL 193 (422)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHH
Confidence 988887431 23 5788888888875433322 121 122333221110000 1 2345
Q ss_pred HhhcccCCcEEEEcC-CCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 222 ESKLTEKSRLLILCS-PSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 222 ~~~l~~~~~~i~l~~-p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
++.+.+++.+|++.- .+.-.|.. .+.+.+++|.++|++| |+++|.||++.++...|.. .......-..| +-+
T Consensus 194 ~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~-g~llI~DEv~tG~GrtG~~-~a~~~~gv~PD----i~t 267 (422)
T PRK05630 194 ELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKH-DILLIADEIATGFGRTGEL-FATLAAGVTPD----IMC 267 (422)
T ss_pred HHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEecceeCCCcCchh-hHHHhcCCCCC----eee
Confidence 555555666666654 26666764 5677899999999999 9999999999876333321 11111111111 337
Q ss_pred cChhccccc-ceeeEEEcCHHHHHHHHHH------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 014172 300 FSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (429)
Q Consensus 300 ~SK~~~~~G-~R~G~v~~~~~~~~~l~~~------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (429)
|+|.++ .| ..+|++++++++.+.+... ....+++.++.+..++.++|+. .++. ...+..+++-+++.
T Consensus 268 ~gK~l~-gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~---l~~~--~~~~~~~~~g~~l~ 341 (422)
T PRK05630 268 VGKALT-GGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEI---IETG--MWRKQVKRIEAELI 341 (422)
T ss_pred eechhh-cCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHH---HHhC--cHHHHHHHHHHHHH
Confidence 899997 67 5899999999998887531 1234556778888888887765 1110 12233334444444
Q ss_pred HHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 373 KSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 373 ~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.|+. .+.+.-++..| +++-+.+... .+...+.+.|+++ ||.+
T Consensus 342 ~~L~~l~~~~~v~~vRg~G-l~~~ie~~~~-----------~~~~~~~~~~~~~-Gl~~ 387 (422)
T PRK05630 342 AGLSPLAHLPGVADVRVLG-AIGVVEMEQP-----------VDMEEATQAAVDH-GVWL 387 (422)
T ss_pred HHHHHhhcCCCeeeeeccc-cEEEEEECCc-----------ccHHHHHHHHHHC-CeEE
Confidence 44443 33343334444 4466666421 1356788888776 8765
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-11 Score=123.24 Aligned_cols=319 Identities=15% Similarity=0.114 Sum_probs=183.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++- +|.+.+++.+.+.+..+.+.. .-..+....+++.+.+... -..+.+++++++++++
T Consensus 28 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~-~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAv 104 (447)
T PRK06917 28 QNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRS-QFTSEPAEKLAKKLSDLSP--GDLNWSFFVNSGSEAN 104 (447)
T ss_pred CCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCcccc-ccCCHHHHHHHHHHHHhCC--CCCCEEEEeCChHHHH
Confidence 3578899998875 33444 799999999998764222211 1123556667777765543 1235899999999999
Q ss_pred HHHHHHhc-------CCC-CEEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCCCC--CC--------CC
Q 014172 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISEN--FL--------LD 217 (429)
Q Consensus 169 ~~~l~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~--~~--------~d 217 (429)
+.+++... .+| .+|+...-+|.+....+.. .|. .+..++...... +. -+
T Consensus 105 e~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 184 (447)
T PRK06917 105 ETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLAC 184 (447)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHH
Confidence 99988762 133 6788888888876543332 221 111222111000 00 02
Q ss_pred HHHHHhhcc----cCCcEEEEcCCC-CCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 218 PKVLESKLT----EKSRLLILCSPS-NPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 218 ~e~l~~~l~----~~~~~i~l~~p~-NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
++.+++.+. +++.+|++.... +-.|. ..+.+.+++|.++|++| |+++|.||++.+|...|... ....+.-..
T Consensus 185 ~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~-g~llI~DEv~tGfGRtG~~~-a~~~~gv~P 262 (447)
T PRK06917 185 ATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHY-DILFIADEVMTGLGRTGAMF-AMEHWGVEP 262 (447)
T ss_pred HHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHc-CCEEEEechhhCcCcccchh-hHHhcCCCC
Confidence 456666664 235555554333 33444 55788899999999999 99999999998753233211 111111111
Q ss_pred CceEEEeccChhcccccc-eeeEEEcCHHHHHHHHHHh----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~~----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
| +.+|+|.++ .|. .+|.+++.+++.+.+.... ...+++.++++.+++.+.|+. .++ +++.+..++
T Consensus 263 D----i~~~gK~l~-~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~---l~~--~~l~~~~~~ 332 (447)
T PRK06917 263 D----IMTLGKGLG-AGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEY---MEK--HNLPEKAAE 332 (447)
T ss_pred C----EEEeeehhc-cCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHH---HHH--CCHHHHHHH
Confidence 2 456899998 785 8999999999988775321 223556788888888888874 111 123344444
Q ss_pred HHHHHHHHhcc----CCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 367 RRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 367 ~r~~l~~~L~~----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
+-+++.+.|++ .+-+.-++..|-| +.+.+-.... ..+.+.. ......++..|+++ ||.+
T Consensus 333 ~g~~l~~~L~~l~~~~~~i~~vrG~Gl~-~~ie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-Gvl~ 396 (447)
T PRK06917 333 KGEYLIKGLQKVQQQSTIIGDVRGKGLL-IGVEFVADKK-TKQPFSKSQAVASELISVAAKN-GLLL 396 (447)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeecceE-EEEEEeccCC-cCCCCcchhHHHHHHHHHHHhC-CcEE
Confidence 44445454444 3323333455544 4444421000 0000000 01145677777776 8865
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-11 Score=124.24 Aligned_cols=312 Identities=15% Similarity=0.114 Sum_probs=183.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+..||+..|. ..++. +|.+.+++.+.+++.. |.+. ....+....+++.+.+.... ..+.|++++++++++
T Consensus 44 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~--~~~~~~~~~~~~~~la~~l~~~~p~--~~~~v~f~~sGseA~ 119 (442)
T PRK13360 44 DGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELD--YAPAFQMGHPKAFELANRIAEIAPG--GLNHVFFTNSGSESV 119 (442)
T ss_pred CCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCC--CcccCCcCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHH
Confidence 577899998775 23444 7899999999887522 2111 12235555677777654321 235899999999999
Q ss_pred HHHHHHhcC-------CC-CEEEEcCCCCCChHHHHH-HcC------------CEEEEecCCC--C-CCCCC--------
Q 014172 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMAR-IAD------------ATPVILPTRI--S-ENFLL-------- 216 (429)
Q Consensus 169 ~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~-~~g------------~~~~~v~~~~--~-~~~~~-------- 216 (429)
+.+++.... +| .+|+...-+|.+....+. ..| ..+..+|... . ..+..
T Consensus 120 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 199 (442)
T PRK13360 120 DTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAE 199 (442)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHH
Confidence 998886431 22 579988888887643222 111 1122233221 0 00111
Q ss_pred CHHHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 217 DPKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 217 d~e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
..+.+++.+. ++..+|++...+...|.. .+.+.+++|.++|++| |+++|.||++..+-..|.. .....+.-..
T Consensus 200 ~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~-g~llI~DEv~tG~GrtG~~-~a~~~~gv~P 277 (442)
T PRK13360 200 LADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGAP-FAAQYFGVTP 277 (442)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccc-hhhhhcCCCC
Confidence 1456777664 234455555556666765 4677899999999999 9999999999765332321 1111111111
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
| +.+|+|.++ .| ..+|.+++++++.+.+... ....+++.+.++.+++.+.|+. .++ +.+.+.
T Consensus 278 D----ivt~gK~l~-gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~---l~~--~~l~~~ 347 (442)
T PRK13360 278 D----LLTCAKGLT-NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDL---YER--EGLLTR 347 (442)
T ss_pred c----eeeeeeccc-cCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHH---HHh--CCHHHH
Confidence 2 447999998 56 7899999999998876531 1234556788888888888874 221 134445
Q ss_pred HHHHHHHHHHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++-+++.+.|+++ +.+.-++..|-+ +-+.+..... .......+++.+|+++ ||.+
T Consensus 348 ~~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~-~~~~l~~~~~------~~~~~~~~~~~~l~~~-Gvl~ 407 (442)
T PRK13360 348 AARLAPYWEDALHSLRDAPHVIDIRNLGLV-GAVELAPRDG------KPGKRAYEVFLKCFEK-GLMI 407 (442)
T ss_pred HHHHHHHHHHHHHHhhcCCCeeeeeccceE-EEEEEecCCC------CcchhHHHHHHHHHHC-CcEE
Confidence 555555666666544 222222333333 3344421100 0001345788888776 8875
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=133.92 Aligned_cols=144 Identities=14% Similarity=0.183 Sum_probs=110.1
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC----CCC-----HHHHHhh
Q 014172 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF----LLD-----PKVLESK 224 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~----~~d-----~e~l~~~ 224 (429)
.....++++|+|.++..++++++.+||.||+++.+|-+....+.+.|+++++++... +.+ .++ ++.|+++
T Consensus 210 Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~r-n~~Gi~g~I~~~~~~~e~i~~~ 288 (714)
T PRK15400 210 ADRSYMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTR-NAYGILGGIPQSEFQHATIAKR 288 (714)
T ss_pred CCcEEEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccc-cccCCccCCCccccCHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999997543 222 234 8999998
Q ss_pred ccc--CCc---EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCccc-ccCCCCC-CccccC-CCCCCceEE
Q 014172 225 LTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI-IYAPATH-TSFASL-PGMWERTLT 296 (429)
Q Consensus 225 l~~--~~~---~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~-~~~~~~~-~~~~~~-~~~~~~~i~ 296 (429)
+.. +.+ .++|++|+. -|.+++ +++|++.|+.+ + |++||||+.. .|.+.-. .+.... ....+.+++
T Consensus 289 i~~~p~ak~p~~~vit~pTY-dG~~yd---~~~I~~~~~~~-~--ilvDEAwgah~~F~p~~~~~sam~~ga~~~~~i~v 361 (714)
T PRK15400 289 VKETPNATWPVHAVITNSTY-DGLLYN---TDFIKKTLDVK-S--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYE 361 (714)
T ss_pred HHhCccccCccEEEEECCCC-ccEecC---HHHHHHHhCCC-C--EEEEccchhhhccCcccCCcChhhcCCCCCCceEE
Confidence 864 223 788999965 899999 88899999888 7 5889999853 3443211 111111 111255699
Q ss_pred EeccChhcc
Q 014172 297 VNGFSKAFA 305 (429)
Q Consensus 297 ~~S~SK~~~ 305 (429)
+.|.+|.++
T Consensus 362 tQStHKtL~ 370 (714)
T PRK15400 362 TQSTHKLLA 370 (714)
T ss_pred EEchhhccc
Confidence 999999984
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-11 Score=122.83 Aligned_cols=314 Identities=13% Similarity=0.056 Sum_probs=185.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++- +|++.+++.+.+.+..+.. ...-..+....+++.+.+..+. ..+.+++++++++++
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~-~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~sGseAv 127 (453)
T PRK06943 51 RDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAM-LAGCTHEPAIELAERLAALTGG--TLGHAFFASDGASAV 127 (453)
T ss_pred CCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCCHHHH
Confidence 3578899998885 33444 7899999999887532111 1111234556677777654431 225899999999999
Q ss_pred HHHHHHhc-------CCC-CEEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCCCC--CC--------CC
Q 014172 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISEN--FL--------LD 217 (429)
Q Consensus 169 ~~~l~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~--~~--------~d 217 (429)
..+++... .+| .+|+...-+|.+....+.. .|- .+..++.....+ +. -+
T Consensus 128 e~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 207 (453)
T PRK06943 128 EIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARA 207 (453)
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHH
Confidence 99988752 123 6788888888875432221 111 122233221100 00 12
Q ss_pred HHHHHhhcc---cCCcEEEEcC-CCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~---~~~~~i~l~~-p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
++.+++.+. +++.+|++.- .+.-.|. +.+.+.+++|.++|++| |+++|.||++.+|-..|.. .....+.-..|
T Consensus 208 ~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~-gillI~DEV~TG~GRtG~~-fa~~~~gv~PD 285 (453)
T PRK06943 208 LADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRY-GVHLIADEIAVGCGRTGTF-FACEQAGVWPD 285 (453)
T ss_pred HHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCCCcch-hHHHhCCCCCC
Confidence 466777664 3455666654 2555676 46788899999999999 9999999999886433321 11111111112
Q ss_pred ceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
+-+++|.++ .| ..+|.+++++++.+.+..- ....+++.++++.+++.+.|+. .++ +++.+..+
T Consensus 286 ----ivt~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~---i~~--~~l~~~~~ 355 (453)
T PRK06943 286 ----FLCLSKGIS-GGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDL---FAE--DDVLARNA 355 (453)
T ss_pred ----eEeeehhhc-cCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHH---HHh--cCHHHHHH
Confidence 455799998 88 5999999999998877531 1334556788888888888875 111 12233333
Q ss_pred HHHHHHHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 366 ERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 366 ~~r~~l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.-+++.+.|++ .+++.-++..|-| +-+.+...... .......+..+++++ ||.+
T Consensus 356 ~~G~~l~~~L~~l~~~~~v~~vrG~Gl~-~gvel~~~~~~------~~~~~~~i~~~~~~~-Gll~ 413 (453)
T PRK06943 356 RKSARLRAALAPLAAHPQVRHLRQRGTI-FAFDVALDGDA------ARTFSRRFFEAALER-ELLL 413 (453)
T ss_pred HHHHHHHHHHHHHhcCCCEEeEeccccE-EEEEEccCCCc------chHHHHHHHHHHHHC-CcEE
Confidence 334444444433 3455544455544 45555310000 000135677777766 8765
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-11 Score=122.85 Aligned_cols=312 Identities=17% Similarity=0.144 Sum_probs=185.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+..||+..|. ..++. +|.+.+++.+.+.+.. |.+. .-..+....+++.+.+..+. ..+.|++++++++++
T Consensus 47 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~--~~~~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGseAv 122 (445)
T PRK09221 47 DGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLD--YAPAFQMGHPLAFELAERLAELAPG--GLDHVFFTNSGSESV 122 (445)
T ss_pred CCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhcc--CccccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHHH
Confidence 578899998885 33443 7889999999887521 1111 11234455577777654431 236899999999999
Q ss_pred HHHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHc-C------------CEEEEecCCC---CCCCCC--------
Q 014172 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRI---SENFLL-------- 216 (429)
Q Consensus 169 ~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~---~~~~~~-------- 216 (429)
+.+++.... ++ .+|+....+|.+....+... | ..+..+|... ...+..
T Consensus 123 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (445)
T PRK09221 123 DTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAE 202 (445)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHH
Confidence 998886431 12 57888888888764332211 1 0122233211 000100
Q ss_pred CHHHHHhhcc----cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 217 DPKVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 217 d~e~l~~~l~----~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
..+.+++.+. +++.+|++...+...|... +.+.+++|.++|++| |+++|.||++..|...|.. .....+.-..
T Consensus 203 ~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~-g~llI~DEV~tG~GRtG~~-~~~~~~gv~P 280 (445)
T PRK09221 203 LADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKH-GILLIFDEVITGFGRLGAA-FAAERFGVTP 280 (445)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCCcCchh-hHHHhcCCCC
Confidence 1346666664 2455666655566678754 566799999999999 9999999999865332321 1111111111
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
| +.+|+|.++ .| ..+|.+++++++++.+... ....+++.++++..++.+.|+. .++ +.+.+.
T Consensus 281 D----i~~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~---i~~--~~l~~~ 350 (445)
T PRK09221 281 D----IITFAKGLT-NGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDI---YRE--EDLFER 350 (445)
T ss_pred C----EEEeccccc-cCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHH---HHh--ccHHHH
Confidence 2 457999997 56 6799999999988876431 1234556788888888887764 121 134556
Q ss_pred HHHHHHHHHHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.-+++.+.|+++ +.+.-++..| .++-+.+..... .......++++.|+++ ||.+
T Consensus 351 ~~~~g~~l~~~l~~l~~~~~v~~vrg~G-l~~~v~~~~~~~------~~~~~~~~~~~~~~~~-Gv~~ 410 (445)
T PRK09221 351 AAELAPYFEDAVHSLKGLPHVIDIRNIG-LVAGIELAPRPG------APGARGYEAFMKCFEK-GLLV 410 (445)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecCc-eEEEEEEecccc------cccchHHHHHHHHHHC-CeEE
Confidence 666666777776655 2222233344 334454432100 0001245788888776 8875
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-11 Score=124.00 Aligned_cols=319 Identities=13% Similarity=0.110 Sum_probs=183.0
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNA-GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~-G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
..|+..||+..|.. .++. +|++.+++.+.+.+..+.. ... ...+.+..+++.+.+.... ..+.|+++++++++
T Consensus 48 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~-~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGseA 124 (466)
T PRK07036 48 ADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYT-PFGDMTNAPAAELAAKLAELAPG--DLNHVFLTTGGSTA 124 (466)
T ss_pred CCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccc-cccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCchHH
Confidence 35788999988862 3333 7899999999887521111 111 2345667777777655321 23589999999999
Q ss_pred HHHHHHHhc------C-CC-CEEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCC--CCCCCC-------
Q 014172 168 ILQAVLAVC------S-PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRIS--ENFLLD------- 217 (429)
Q Consensus 168 l~~~l~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~--~~~~~d------- 217 (429)
++.+++... . +| .+|+...-+|.+....+... |. .+..++.... ..+..+
T Consensus 125 ve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 204 (466)
T PRK07036 125 VDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDF 204 (466)
T ss_pred HHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHH
Confidence 999888752 1 22 57888888888755333221 11 1222332110 001111
Q ss_pred -HHHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc-cCCCC
Q 014172 218 -PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGM 290 (429)
Q Consensus 218 -~e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~-~~~~~ 290 (429)
++.+++.+. +++.+|++...+.-.|.. .+++.+++|.++|++| |+++|.||++.+|...|.. .... .+.-.
T Consensus 205 ~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~~~~~~~gv~ 282 (466)
T PRK07036 205 LVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRY-DILYISDEVVTGFGRLGHF-FASEAVFGIQ 282 (466)
T ss_pred HHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCcCchh-hhhhhhcCCC
Confidence 233444442 245566665556556764 5677899999999999 9999999999876333321 1111 11111
Q ss_pred CCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
.| +.+|+|.++ .| ..+|.+++++++.+.+... ....+++.++++.+++.+.|+. .++ +++.+
T Consensus 283 PD----ivt~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~---i~~--~~l~~ 352 (466)
T PRK07036 283 PD----IITFAKGLT-SGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEI---MER--EGLCE 352 (466)
T ss_pred CC----EEEEccccc-cCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHH---HHh--CCHHH
Confidence 12 456899998 78 4899999999998887531 2223556788888888888864 111 12333
Q ss_pred HHHHHHHHHHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 363 AFRERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
..++.-+++.+.|++ .+.+.-+...|.| +.+.+...... .+-+.. ..-...+...|+++ ||.+
T Consensus 353 ~~~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~-~~ve~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-Gvl~ 419 (466)
T PRK07036 353 HVREVGPYFEERLASLRELPLVGDVRGDHLM-ACVECVADKGS-KALLPEDIAIGQRIDRHCQER-GLLV 419 (466)
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEEeeceE-EEEEEccCccc-cCCCCchhHHHHHHHHHHHHC-CcEE
Confidence 344444444444433 3333334455544 55666321000 000000 00134677777766 8765
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-11 Score=122.81 Aligned_cols=319 Identities=15% Similarity=0.138 Sum_probs=182.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+..||+..|. ..++- +|++.+++.+++.+..+ +... ....+.+..+++.+.+..+. -..+.+++++++++++
T Consensus 40 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~~~~~~~~~lae~L~~~~~~-~~~~~v~f~~sGsEAv 117 (449)
T PRK07481 40 DGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEY-YSTFDGTTHPRAIELSYELIDMFAP-EGMRRVFFSSGGSDSV 117 (449)
T ss_pred CCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccc-eecccccCCHHHHHHHHHHHHhcCC-CCCCEEEEcCchHHHH
Confidence 577899998775 33443 68899999998876321 1111 11235566677777655431 1235899999999999
Q ss_pred HHHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCC--CCC-CCHHHH---
Q 014172 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISE--NFL-LDPKVL--- 221 (429)
Q Consensus 169 ~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~--~~~-~d~e~l--- 221 (429)
+.+++.... +| .+|+...-+|.+....+..... .+..++..... .+. -|++.+
T Consensus 118 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~ 197 (449)
T PRK07481 118 ETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARI 197 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHH
Confidence 999887532 23 5788888888875543322211 12222211000 011 133333
Q ss_pred -----Hhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 222 -----ESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 222 -----~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
++.+. +++.+|++...+.-.|.. .+.+.+++|.++|++| |+++|.||++.+|...|... ....+.-..
T Consensus 198 ~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~~-a~~~~gv~P 275 (449)
T PRK07481 198 CARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRH-GILLIADEVVTGFGRTGSWF-GSRGWGVKP 275 (449)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCcCchhh-HhhhcCCCC
Confidence 33332 345566665455556764 5677899999999999 99999999999864333211 111111111
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
| +-+++|.++ .| +.+|.+++++++.+.+... ....+++.++++.+++.+.|+. .++ +++.+.
T Consensus 276 D----iv~~gKgl~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~---l~~--~~l~~~ 345 (449)
T PRK07481 276 D----IMCLAKGIT-SGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDI---VVR--EDLPAN 345 (449)
T ss_pred C----EEEEeeccc-CCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHH---HHh--hhHHHH
Confidence 2 455799998 77 5899999999998887531 2234566788888888888874 111 123333
Q ss_pred HHHHHHHHHHHhcc----CCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.-+++.+.|++ .+-+.-++..|-| +.+.+...... ...... ......+.+.|+++ ||.+
T Consensus 346 ~~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm-~gi~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-Gvl~ 412 (449)
T PRK07481 346 AAKRGAYLLEGLQPLKERFELVGDVRGKGLM-LALDLVADKAT-REPIDPSKGYANAVADVAREN-GVLV 412 (449)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEeecceE-EEEEecccccc-cCCCCchhHHHHHHHHHHHhC-CeEE
Confidence 44444445554444 3323334455544 55555321000 000000 00134677777765 8875
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-11 Score=123.37 Aligned_cols=307 Identities=14% Similarity=0.102 Sum_probs=179.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++. +|.+.+++.+.+++........ -..+....+++.+.+..+. .-+.|++++++++++.
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~--~~~~v~f~~sGseA~e 119 (427)
T TIGR00508 43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGG-FTHKPAIELCQKLVKMTPN--ALDCVFLADSGSVAVE 119 (427)
T ss_pred CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccc-cCCHHHHHHHHHHHhhCCC--CCCEEEEeCCcHHHHH
Confidence 578899998876 23333 6899999999887532111000 0122334455555544331 2368999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHHHHHH-cCCE-------------EEEecCCCCCCCC-----CCHHHHH
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-ADAT-------------PVILPTRISENFL-----LDPKVLE 222 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~g~~-------------~~~v~~~~~~~~~-----~d~e~l~ 222 (429)
.+++.... +| .+|+...-+|.+....+.. .|.. ...++.. ...+. -|+++++
T Consensus 120 ~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~l~ 198 (427)
T TIGR00508 120 VALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAP-QNRFDEEWNEEAITPLA 198 (427)
T ss_pred HHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCC-CccccchhHHHHHHHHH
Confidence 88886431 23 5788888888875433222 2211 1112211 01110 1456677
Q ss_pred hhcc---cCCcEEEEcCC-CCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 223 SKLT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 223 ~~l~---~~~~~i~l~~p-~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
+.+. .+..+|++... +.-.|. +.+.+.+++|.++|++| ++++|.||++.++...|... ....+.-..+ |+
T Consensus 199 ~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~Gr~G~~~-~~~~~~v~pD--i~- 273 (427)
T TIGR00508 199 KLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQY-DILLIADEIATGFGRTGKLF-ACEHAGVVPD--IL- 273 (427)
T ss_pred HHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCCccc-hhhhcCCCCC--EE-
Confidence 7664 23445555442 554555 45788999999999999 99999999997754433221 1111111112 33
Q ss_pred eccChhcccccc-eeeEEEcCHHHHHHHHHHh-----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 014172 298 NGFSKAFAMTGW-RLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (429)
Q Consensus 298 ~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~~-----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l 371 (429)
+++|.++ .|+ .++.+++++++.+.+.... ...+++.++++..++.++|+. .++ .+..+..+++-+++
T Consensus 274 -~~gK~l~-gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~---l~~--~~~~~~~~~~~~~l 346 (427)
T TIGR00508 274 -CVGKALT-GGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAI---LLE--GEWQKQVSAIENQL 346 (427)
T ss_pred -Eechhhh-cCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHH
Confidence 3899997 774 6888889999988876421 223344578888888888874 111 12345555556666
Q ss_pred HHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 372 VKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 372 ~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.|+++ +.+.-+...|.+ +-+.+... .+...+.++|+++ ||.+
T Consensus 347 ~~~L~~l~~~~~i~~vrg~G~~-~~i~~~~~-----------~~~~~~~~~l~~~-Gv~~ 393 (427)
T TIGR00508 347 KRELSPLRKNPVVKDVRVLGAI-GVVEMYKP-----------VNVEELQKKFVEQ-GVWI 393 (427)
T ss_pred HHHHHHhhcCCCEEeEeccccE-EEEEECCc-----------cCHHHHHHHHHHC-CeEE
Confidence 6666654 222222233433 55555321 2467888888876 8875
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-11 Score=124.42 Aligned_cols=249 Identities=16% Similarity=0.131 Sum_probs=154.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++. +|.+.+++.+.+.+..+.........+.+..+|+.+.+..+. ..+.+++++++++++
T Consensus 47 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA~ 124 (456)
T PRK07480 47 SEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPP--GFNHVFFTNSGSEAN 124 (456)
T ss_pred CCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCCcHHHH
Confidence 3578899998875 33444 789999999998763211111112346666677777655431 236899999999999
Q ss_pred HHHHHHhcC-------CC-CEEEEcCCCCCChHHHH-HHcCCE------------EEEecCCC--CCCCCCC--------
Q 014172 169 LQAVLAVCS-------PG-DEVIIPAPFWVSYPEMA-RIADAT------------PVILPTRI--SENFLLD-------- 217 (429)
Q Consensus 169 ~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~-~~~g~~------------~~~v~~~~--~~~~~~d-------- 217 (429)
+.+++.... +| .+|+...-+|.+..... ...|.. +..++... ...+..+
T Consensus 125 e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 204 (456)
T PRK07480 125 DTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAA 204 (456)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHH
Confidence 999886532 33 46888887777754322 211111 11122110 0000011
Q ss_pred HHHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
++.+++.+. +++.+|++...+.-.|.+ .+.+.+++|.++|++| |+++|.||++.+|...|.. .....+.-..|
T Consensus 205 ~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~a~~~~gv~PD 282 (456)
T PRK07480 205 ARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKY-DILLVADEVICGFGRTGEW-FGSQHFGIKPD 282 (456)
T ss_pred HHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcCcch-hhhhhcCCCCC
Confidence 255554442 345566665555556765 5666799999999999 9999999999876333321 11111111112
Q ss_pred ceEEEeccChhcccccc-eeeEEEcCHHHHHHHHH----HhhcccCCCchHHHHHHHHHHhc
Q 014172 293 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK----IQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~----~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
+-+|+|.++ .|. .+|.+++++++.+.+.. .....+++.++++.+++.+.|+.
T Consensus 283 ----iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~ 339 (456)
T PRK07480 283 ----LMTIAKGLT-SGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRI 339 (456)
T ss_pred ----eeeeehhhc-cCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHH
Confidence 456899998 774 89999999999887732 22335667888899999888875
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-11 Score=126.39 Aligned_cols=265 Identities=12% Similarity=0.134 Sum_probs=175.6
Q ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCC-C---------C-CCCcEEEecChHHHHHHHHHHhcC--------
Q 014172 117 GINAIREGFTRYTPNAGTLELRSAICHKLKEENGL-S---------Y-TPDQILVSNGAKQSILQAVLAVCS-------- 177 (429)
Q Consensus 117 ~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~-~---------~-~~~~i~~t~G~~~al~~~l~~l~~-------- 177 (429)
+...+......|..++...++.+.+.+|+.+..+. + . +...-++|+|+|++...++.+-.+
T Consensus 110 l~~~lN~n~~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~ 189 (522)
T TIGR03799 110 LMVALNQNLVKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGD 189 (522)
T ss_pred HHHHhcCCcceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhcccccc
Confidence 44455544455555667789999999999887641 1 1 112357788999888877665321
Q ss_pred ------------------CCCEEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCCCCHHHHHhhcc----cCCcEE
Q 014172 178 ------------------PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLT----EKSRLL 232 (429)
Q Consensus 178 ------------------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~l~----~~~~~i 232 (429)
++..|++++-.|.+....++..|. +++.+|++. ++.+|++.|++.++ .+++.+
T Consensus 190 ~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~ 267 (522)
T TIGR03799 190 FKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPL 267 (522)
T ss_pred ccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcE
Confidence 134688899999999999999998 789999863 46799999999886 355555
Q ss_pred EEc--CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc-CCCCCCceEEEeccChhcccccc
Q 014172 233 ILC--SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGW 309 (429)
Q Consensus 233 ~l~--~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~ 309 (429)
.++ ..++.||.+-| +++|+++|++| |+|+++|.+|+....-.. .+.. +.+......+..+.+|.+. ...
T Consensus 268 ~vvataGtt~tGaiDp---l~eIa~i~~~~-g~~lHVDaA~gg~~~~~~---~~r~~l~gle~aDSit~d~HK~l~-~P~ 339 (522)
T TIGR03799 268 AIVGVAGTTETGNIDP---LDEMADIAQEL-GCHFHVDAAWGGATLLSN---TYRHLLKGIERADSVTIDAHKQLY-VPM 339 (522)
T ss_pred EEEEEecCcCCCCcCC---HHHHHHHHHHc-CCeEEEEchhhhHHHhCH---HHHHHhcCchhCCEEEEChhhcCC-cCc
Confidence 443 55779999999 99999999999 999999999986432111 1111 1111234578889999764 335
Q ss_pred eeeEEEcC-HHHHHHHHHHhhc-------------ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 014172 310 RLGYIAGP-KHFVAACNKIQSQ-------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 310 R~G~v~~~-~~~~~~l~~~~~~-------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (429)
.+|+++.. ++..+.+.....+ ...+-+..+ ..+..+|+. .+.+.++.+.++..+..+++.+.|
T Consensus 340 g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~a-l~lw~aL~~--lG~~G~~~ii~~~~~la~~l~~~L 416 (522)
T TIGR03799 340 GAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMA-MLVYAGLHI--IGRKGYELLIDQSIEKAKYFADLI 416 (522)
T ss_pred ccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHH-HHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888774 4554444321000 111112111 122233332 135678888999999999999999
Q ss_pred ccCCCceeec-CCceEEEEEe
Q 014172 376 GELEGVKMSE-PQGAFYLFID 395 (429)
Q Consensus 376 ~~l~g~~~~~-p~~~~~~~~~ 395 (429)
++.|++++.. |+-+. +.++
T Consensus 417 ~~~~~~el~~~p~l~i-v~Fr 436 (522)
T TIGR03799 417 QQQPDFELVTEPELCL-LTYR 436 (522)
T ss_pred hhCCCeEEecCCCccE-EEEE
Confidence 9998998875 44555 3344
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=134.29 Aligned_cols=316 Identities=18% Similarity=0.174 Sum_probs=189.2
Q ss_pred HHHHHHHHHHhcCC----CeEEcCCCCCCCCChHHHHHHHHHHHHcCC---CCCCC---CCCCHHHHHHHHHHHHhhcCC
Q 014172 82 AITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGF---TRYTP---NAGTLELRSAICHKLKEENGL 151 (429)
Q Consensus 82 ~~~~~~~~~~~~g~----~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~---~~Y~~---~~G~~~lr~~ia~~l~~~~g~ 151 (429)
++.+..+++.+.+. .+|-|+.-..- .++.+...+... .++ +-|.| .+|..++...+.+++.+..|.
T Consensus 482 e~~r~~~~l~~kn~~~~~~~i~lGsct~~--~~p~~~~~~~~~--~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~ 557 (954)
T PRK05367 482 EMMRYLRRLEDKDLALDRSMIPLGSCTMK--LNAAAEMIPITW--PEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGY 557 (954)
T ss_pred HHHHHHHHHHhcCcCcccceeeCCcCCCc--CCHHHHHHHHhC--ccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 55555666655442 35666662222 233333332221 123 33444 256778888889999988884
Q ss_pred CCCCCcEEEec-ChHHHHHHHHHHh----cCCCC----EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHH
Q 014172 152 SYTPDQILVSN-GAKQSILQAVLAV----CSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 222 (429)
Q Consensus 152 ~~~~~~i~~t~-G~~~al~~~l~~l----~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 222 (429)
+ ++.+.. |++++....+.++ ..+|| .|++++..|.+....+...|.+++.++++.+ +.+|+++|+
T Consensus 558 d----~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~--G~iD~~~L~ 631 (954)
T PRK05367 558 D----AVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDEN--GNIDLDDLR 631 (954)
T ss_pred C----CEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCC--CCcCHHHHH
Confidence 2 455544 5555554444333 25665 5999999999988899999999999998743 469999999
Q ss_pred hhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 223 SKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 223 ~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
+++++ ++.+|++++|++-.+...+ +++|+++|+++ |+++++|.++...... +. .+...+-.++..|
T Consensus 632 ~~i~~~~~~la~V~it~pst~G~~e~~---I~eI~~i~h~~-G~~v~VDgA~~~al~~------l~-~pg~~GADi~~~s 700 (954)
T PRK05367 632 AKAEEHADNLAAIMITYPSTHGVFEET---IREICEIVHEH-GGQVYLDGANMNAQVG------LA-RPGDIGADVSHLN 700 (954)
T ss_pred HHHhccCCCeEEEEEEcCCCCeeecCC---HHHHHHHHHHc-CCEEEEECcChhhccC------CC-ChhhcCCCEEEec
Confidence 99965 4667778888875444467 99999999999 9999999999632111 11 1122455689999
Q ss_pred cChhcc----cccceeeEEEcCHHHHHHHHHHh-----h---cccCCCchHHHHH----HHHHHhcCCCChHHHHHHHHH
Q 014172 300 FSKAFA----MTGWRLGYIAGPKHFVAACNKIQ-----S---QFTSGASSISQKA----GVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 300 ~SK~~~----~~G~R~G~v~~~~~~~~~l~~~~-----~---~~~~~~~~~~q~a----a~~~l~~~~~~~~~~~~~~~~ 363 (429)
.+|+|+ ..|..+|++.+.+++...+-... . ....+.+.+.|.. +..++.. .+.+.+++..+.
T Consensus 701 ~HK~f~~P~G~GGPg~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~--~G~~Glr~~a~~ 778 (954)
T PRK05367 701 LHKTFCIPHGGGGPGVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRM--MGAEGLRQATEV 778 (954)
T ss_pred CcccCCCCcCCCCCceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHH--HCHHHHHHHHHH
Confidence 999974 24555888887765544432211 0 0111112222211 1222221 145667777777
Q ss_pred HHHHHHHHHHHhccCCCceeecCCceEE--EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 364 FRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~~~~p~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.-.+.+++.++|++...+.+..|.+.++ +.+++..... ....+..+++++|++. |+.
T Consensus 779 ~~~~A~Yl~~~L~~~~~~~~~~~~~~~~~e~i~~~~~~~~------~~g~~~~di~krL~d~-G~~ 837 (954)
T PRK05367 779 AILNANYIAKRLKDHYPVLYTGANGRVAHECILDLRPLKE------STGITVDDIAKRLIDY-GFH 837 (954)
T ss_pred HHHHHHHHHHHHHhhcCccccCCCCCcccceEEEeecccc------cCCCCHHHHHHHHHHC-CCe
Confidence 7788999999997742443333322111 2233321100 0002568999999664 664
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-11 Score=120.97 Aligned_cols=318 Identities=12% Similarity=0.086 Sum_probs=180.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++- +|.+.+++.+.+.+... +.......+....+++.+.+.... ..+.+++++++++++.
T Consensus 28 dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~-~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~sGsEAve 104 (443)
T PRK07483 28 TGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAY-AHTSFFTTEPAEALADRLVAAAPA--GLEHVYFVSGGSEAVE 104 (443)
T ss_pred CCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccC-ccccccCCHHHHHHHHHHHHhCCC--CCCEEEEcCCcHHHHH
Confidence 577899998885 33444 78999999999875321 111111245556677777654321 2368999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCCCCC---CC--------C
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISENF---LL--------D 217 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~~---~~--------d 217 (429)
.+++.... +| .+|+...-+|++....+.. .|- .+..++.....+. .. .
T Consensus 105 ~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (443)
T PRK07483 105 AALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRL 184 (443)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHH
Confidence 98886531 33 4688888888876432222 111 1122221110000 00 0
Q ss_pred HHHHHhhcc----cCCcEEEEcCCCC-Ccc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 218 PKVLESKLT----EKSRLLILCSPSN-PTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 218 ~e~l~~~l~----~~~~~i~l~~p~N-PtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
++.+++.+. +++.+|++...+. -.| ...+++.+++|.++|++| |+++|.||++.+|...|.. .....+.-..
T Consensus 185 ~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG~~-~a~~~~gv~P 262 (443)
T PRK07483 185 ADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRY-GVLLILDEVMCGMGRTGTL-FACEEDGVAP 262 (443)
T ss_pred HHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHh-CCEEEEecceeCcccCcHH-HHHhhcCCCC
Confidence 255666553 3455666544442 235 455778899999999999 9999999999876433321 1111111111
Q ss_pred CceEEEeccChhcccccc-eeeEEEcCHHHHHHHHHH----hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~----~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
| +-+++|.++ .|. .+|.+++++++.+.+... ....+++.++++.+++.+.|+. .++ +++.+..++
T Consensus 263 D----iv~~gK~l~-gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~---i~~--~~l~~~~~~ 332 (443)
T PRK07483 263 D----LVTIAKGLG-AGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRV---IAE--DGLLANVRA 332 (443)
T ss_pred C----eeeehhhhc-cCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHH---HHh--cCHHHHHHH
Confidence 2 555899998 885 999999999998877532 1234566788888888888864 111 123333334
Q ss_pred HHHHHHHHhc----cCCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 367 RRDFLVKSFG----ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 367 ~r~~l~~~L~----~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
.-+++.+.|+ +.+.+.-++..|-| +-+.+....... ..+.. ......+.+.++++ ||.+
T Consensus 333 ~g~~l~~~L~~l~~~~~~i~~vRG~Glm-~gie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gll~ 396 (443)
T PRK07483 333 RGEQLRARLRERLGQHPHVGDIRGRGLF-VGVELVADRATK-APFDPALKLHARIKREAMAR-GLMV 396 (443)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEeecccE-EEEEEeeccccc-CCCCchhhHHHHHHHHHHHC-CcEE
Confidence 4444444443 34333333455544 445442110000 00000 00134677887776 8765
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-11 Score=121.73 Aligned_cols=324 Identities=13% Similarity=0.049 Sum_probs=184.0
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC---CCCCcEEEecChH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS---YTPDQILVSNGAK 165 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~---~~~~~i~~t~G~~ 165 (429)
..|+..||+..|.. .++- +|++.+++.+.+++-.+.. ...-..+.+..+++.+.+..... -..+.|+++++++
T Consensus 61 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~-~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGS 139 (472)
T PRK08742 61 HDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVM-LAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGS 139 (472)
T ss_pred CCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCcc-ccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCch
Confidence 35788999988853 3343 6889999998876421111 11112345667777776544210 0235899999999
Q ss_pred HHHHHHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCC--CCCC------
Q 014172 166 QSILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISE--NFLL------ 216 (429)
Q Consensus 166 ~al~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~--~~~~------ 216 (429)
+++..+++.... +| .+|+...-+|.+....+...+. .+..+|..... .+..
T Consensus 140 EAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~ 219 (472)
T PRK08742 140 AGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYA 219 (472)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHH
Confidence 999999887532 22 6788888888876544333211 12223321100 0011
Q ss_pred --CHHHHHhhcc---cCCcEEEEcC-CCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 217 --DPKVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 217 --d~e~l~~~l~---~~~~~i~l~~-p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
+++.+++.+. +++.+|++.. .++-.|. +.+++.++++.++|++| |+++|.||++.+|...|... ....+.-
T Consensus 220 ~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~-gillI~DEV~TGfGRtG~~~-a~e~~gv 297 (472)
T PRK08742 220 LQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH-GAFLIADEIATGFGRTGTLF-ACEQAGV 297 (472)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCCCccch-HHHhcCC
Confidence 2466666664 3455555543 2555676 55778899999999999 99999999999874444211 1111111
Q ss_pred CCCceEEEeccChhcccccc-eeeEEEcCHHHHHHHHHH------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNKI------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~~------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
..| +-+++|.++ .|. .+|.+++++++.+.+... ....+++.++++.+++.+.|+.- .++.+.+..+
T Consensus 298 ~PD----iv~~gKgl~-gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i--~~~~l~~~~~ 370 (472)
T PRK08742 298 MPD----LLCLSKGLT-GGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIF--ADDDVIARNQ 370 (472)
T ss_pred CCC----EEEEccccc-CCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHH--HHCCHHHHHH
Confidence 111 455799998 784 899999999998876421 12345567888888888888641 0112222222
Q ss_pred HHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC-ChHHHHHHHHHhCCeec
Q 014172 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~Ll~~~gV~v 428 (429)
+..++...+.+.+++.+.+.-++..|-| +-+.+...... .+.+.... -...+.++++++ ||.+
T Consensus 371 ~~g~~l~~~~~~~~~~~~i~dvRG~Gl~-~giel~~~~~~-~~~~~~~~~~~~~~~~~~~~~-Gll~ 434 (472)
T PRK08742 371 PTAARMTQLAAQIGEHPHVADVRQAGMV-VAFELTRGGNK-RTPFPPAARVGLHAYRAALAR-GVVL 434 (472)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEeccceE-EEEEeccCccc-cccCCchhHHHHHHHHHHHHC-CeEE
Confidence 2222222334444555444444555544 44555321000 00000000 124577777766 8764
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-12 Score=125.64 Aligned_cols=233 Identities=18% Similarity=0.233 Sum_probs=141.8
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|. ..++- +|.+.+++.+.+.+.. .++. ....+-.+++.+.+... ..+.+++++++++++
T Consensus 45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~-~~~~---~~~~~~~la~~l~~~~p---~~~~v~f~~sGseA~ 117 (431)
T PRK06209 45 VDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGC-NFTR---PSAIELDAAESFLELID---GADMVKFCKNGSDAT 117 (431)
T ss_pred CCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCc-CCCC---CCHHHHHHHHHHHHhCC---ccceEEEecCHHHHH
Confidence 3578899998876 33443 7899999999987643 2321 23334445555554432 236899999999999
Q ss_pred HHHHHHhcC-CC-CEEEEc-CCCCCChHHHH----HH-cCC------EEEEecCCCCCCCCCCHHHHHhhccc---CCcE
Q 014172 169 LQAVLAVCS-PG-DEVIIP-APFWVSYPEMA----RI-ADA------TPVILPTRISENFLLDPKVLESKLTE---KSRL 231 (429)
Q Consensus 169 ~~~l~~l~~-~g-d~Vlv~-~p~y~~~~~~~----~~-~g~------~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~ 231 (429)
..+++.... .| ..|+.. .-+|.++.... .. .|. .+..++ . -|++.+++.+.. +..+
T Consensus 118 e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~---~d~~~l~~~l~~~~~~~aa 190 (431)
T PRK06209 118 SAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTPMSAGIPASVSALTVTFR----Y---NDIASLEALFEDHPGRIAC 190 (431)
T ss_pred HHHHHHHHHHhCCCeEEEeccCccccccccccccCCCCCCCChhHhccccccC----C---CCHHHHHHHHHhCCCCEEE
Confidence 999886532 24 345544 23332211100 00 010 011111 1 178999888752 3444
Q ss_pred EEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee
Q 014172 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL 311 (429)
Q Consensus 232 i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~ 311 (429)
|++ -|- .|...+.+.+++|.++|++| |+++|.||++.++...+........+. .+ +.+|+|.+| .|..+
T Consensus 191 vi~-Epv--~g~~~~~~~l~~l~~lc~~~-g~lLI~DEv~tG~~~~~~g~~~~~gv~--PD----i~t~gK~lg-gG~p~ 259 (431)
T PRK06209 191 VIL-EPA--TADEPQDGFLHEVRRLCHEN-GALFILDEMITGFRWHMRGAQKLYGIV--PD----LSCFGKALG-NGFAV 259 (431)
T ss_pred EEE-ccc--cCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccCCcCcchhhHHhCCC--cc----eeeehhhhc-CCccc
Confidence 444 442 35577888999999999999 999999999977643211111111111 12 577999998 78899
Q ss_pred eEEEcCHHHHHH--HHHH--h----hcccCCCchHHHHHHHHHHhc
Q 014172 312 GYIAGPKHFVAA--CNKI--Q----SQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 312 G~v~~~~~~~~~--l~~~--~----~~~~~~~~~~~q~aa~~~l~~ 349 (429)
|++++++++++. +... . ...++++++++.+++.+.|+.
T Consensus 260 ~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~ 305 (431)
T PRK06209 260 SALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAI 305 (431)
T ss_pred EEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHH
Confidence 999999988876 3111 1 123444566777777777764
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-11 Score=126.93 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=110.4
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC----CCCH-----HHHHhh
Q 014172 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF----LLDP-----KVLESK 224 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~----~~d~-----e~l~~~ 224 (429)
.....++++|+|.++..++++++.+||.||+++.+|-+....+.+.|+++++++... +.+ .+++ +.|+++
T Consensus 210 Ad~tyfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~-n~~Gi~g~I~~~~~~~e~I~~~ 288 (713)
T PRK15399 210 AEQSYIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR-NALGILGGIPRREFTRDSIEEK 288 (713)
T ss_pred CCcEEEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccc-cccCCcCCCChhhccHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999997543 222 2445 888888
Q ss_pred ccc-----CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCC-CccccC-CCCCCceEE
Q 014172 225 LTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATH-TSFASL-PGMWERTLT 296 (429)
Q Consensus 225 l~~-----~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~-~~~~~~-~~~~~~~i~ 296 (429)
+.. ++++++|++|+. -|.+++ +++|++.|. --+|++||||+. +.|.+... .+.... .+....+++
T Consensus 289 i~~~p~~~~p~~vvit~pTY-dGi~yd---~~~I~~~~g---~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~ 361 (713)
T PRK15399 289 VAATTQAQWPVHAVITNSTY-DGLLYN---TDWIKQTLD---VPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFE 361 (713)
T ss_pred HHhCCCcCCceEEEEECCCC-CceeeC---HHHHHHHhC---CCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeee
Confidence 853 346888999965 899999 777888772 224569999985 33443111 111111 122334567
Q ss_pred EeccChhcccccceee-EEEc
Q 014172 297 VNGFSKAFAMTGWRLG-YIAG 316 (429)
Q Consensus 297 ~~S~SK~~~~~G~R~G-~v~~ 316 (429)
+.|.+|.+ +++.-+ ++..
T Consensus 362 tQStHKtL--~alTQaS~iHv 380 (713)
T PRK15399 362 TQSTHKML--AAFSQASLIHI 380 (713)
T ss_pred eeehhccc--cccchheeeee
Confidence 99999998 455444 4434
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-11 Score=121.33 Aligned_cols=318 Identities=12% Similarity=0.089 Sum_probs=184.8
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNA-GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~-G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
..|+..||+..|.. .++- +|++.+++.+.+++.. +.... -..+....+++.+.+.... ..+.++++++++++
T Consensus 53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~--~~~~~~~~~~~~~~lae~L~~~~p~--~~~~v~f~~SGseA 128 (460)
T PRK06916 53 VNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIA--HSTLLGLANVPSILLAEKLIEVVPE--GLKKVFYSDSGATA 128 (460)
T ss_pred CCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCCC--CCCEEEEeCCcHHH
Confidence 35788999987752 3343 7889999999987521 11111 1234556677776654431 23589999999999
Q ss_pred HHHHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCC--CCC--------C
Q 014172 168 ILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE--NFL--------L 216 (429)
Q Consensus 168 l~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~--------~ 216 (429)
+..+++.... +| ..|+....+|.+....+... |. .+..+|..... .+. -
T Consensus 129 ve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~ 208 (460)
T PRK06916 129 VEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKK 208 (460)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHH
Confidence 9999887542 33 67888888888755433322 21 12223321100 000 1
Q ss_pred CHHHHHhhcc---cCCcEEEEcC-CCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 217 DPKVLESKLT---EKSRLLILCS-PSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 217 d~e~l~~~l~---~~~~~i~l~~-p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
+++.+++.+. ++..+|++.. .+.-.|.+ .+++.+++|.++|++| |+++|.||++.+|...|.. .....+.-..
T Consensus 209 ~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~-g~llI~DEV~TG~GRtG~~-~a~~~~gv~P 286 (460)
T PRK06916 209 HLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKY-NVLFITDEVATGFGRTGKM-FACEHENVTP 286 (460)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHc-CCEEEeechhhCCCcCchh-hHHHhcCCCC
Confidence 3456666664 3455665544 35556765 5888899999999999 9999999999876333321 1111111111
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHH-------HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~-------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
| +-+++|.++ .| +.+|.+++.+++.+.+.. .....+++.++++..++.+.|+. .++ +++.+.
T Consensus 287 D----iv~~gK~l~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~---l~~--~~l~~~ 356 (460)
T PRK06916 287 D----IMTAGKGLT-GGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLEL---YEK--TNLIEQ 356 (460)
T ss_pred C----eeeeehhhh-cCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHH---HHh--ccHHHH
Confidence 2 446899998 78 599999999999887642 11233555688888888888764 111 123344
Q ss_pred HHHHHHHHHHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCC-hHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN-SESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~Ll~~~gV~v 428 (429)
.+++-+++.+.|+++ +.+.-++..|-| +-+.+..... ..+.+..... ...+...|+++ ||.+
T Consensus 357 ~~~~g~~l~~~l~~l~~~~~v~~vrG~Glm-~giel~~~~~-~~~~~~~~~~~~~~i~~~~~~~-Gvl~ 422 (460)
T PRK06916 357 VARKTEYVATQLEDLFALKHVGDIRQLGLM-VGIELVKNKE-TKEPFEWTERVGVQVCKRSREL-GMLT 422 (460)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEeecCCce-eeEEeecccc-cccCCCchhhHHHHHHHHHHHC-CeEE
Confidence 444555555555543 333334455544 4444421100 0000000001 24677777765 8865
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.6e-11 Score=120.46 Aligned_cols=249 Identities=16% Similarity=0.123 Sum_probs=151.2
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEe-cChHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVS-NGAKQ 166 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t-~G~~~ 166 (429)
..|+.+||+..|.. .++- +|.+.+++.+.+.+... +....-..+.+..+++.+.+........ +.++++ +++++
T Consensus 60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSE 138 (464)
T PRK06938 60 VEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELP-LHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTD 138 (464)
T ss_pred CCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhc-ccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHH
Confidence 35788999988863 3343 78999999998864321 1111112345555666665433211111 356565 78999
Q ss_pred HHHHHHHHhcC-CC-CEEEEcCCCCCChHHHHHH-cCC------------EEEEecCCCCCC--CC--------CCHHHH
Q 014172 167 SILQAVLAVCS-PG-DEVIIPAPFWVSYPEMARI-ADA------------TPVILPTRISEN--FL--------LDPKVL 221 (429)
Q Consensus 167 al~~~l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~g~------------~~~~v~~~~~~~--~~--------~d~e~l 221 (429)
++..+++.... .| .+|+...-+|.+....+.. .|. .+..+|...... +. .+++.+
T Consensus 139 Ave~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l 218 (464)
T PRK06938 139 AVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYL 218 (464)
T ss_pred HHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHH
Confidence 99988887532 33 6788888888876543332 111 123333321100 00 135677
Q ss_pred Hhhccc------CCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCce
Q 014172 222 ESKLTE------KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (429)
Q Consensus 222 ~~~l~~------~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (429)
++.+.. ++.+|++...+.-.|.+ .+.+.+++|.++|++| |+++|.||+..+|...|.. .....+.-..|
T Consensus 219 ~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~-giLlI~DEV~tGfGRtG~~-~a~e~~gv~PD-- 294 (464)
T PRK06938 219 ENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEA-GIPLIVDEIQSGFGRTGKM-FAFEHAGIIPD-- 294 (464)
T ss_pred HHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCcHH-HHHHhcCCCCC--
Confidence 777752 34555554344445665 4588899999999999 9999999999987433321 11111111111
Q ss_pred EEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
+-+++|.+| .|..+|.+++.+++ +.+.......+++.++++.+++.+.|+.
T Consensus 295 --iv~~gKglg-gG~PlsAv~~~~~~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~ 345 (464)
T PRK06938 295 --VVVLSKAIG-GSLPLAVVVYREWL-DTWQPGAHAGTFRGNQMAMAAGSATLRY 345 (464)
T ss_pred --EEEeecccc-CCCceEEEeehhHh-hccCCCCCCCCCCcCHHHHHHHHHHHHH
Confidence 555899998 88999999998774 4443222334566788888888888874
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-11 Score=120.93 Aligned_cols=318 Identities=12% Similarity=0.052 Sum_probs=183.5
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|.. .++- +|.+.+++.+.+.+..+.. ...-..+.+..+++.+.+... -..+.|+++++++++.+
T Consensus 45 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~-~~~~~~~~~~~lae~L~~~~p--~~~~~v~f~~sGsEAve 121 (466)
T PRK07030 45 EGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVI-LAGFSHEPVIELSERLVKITP--PGLSRCFYADNGSSAIE 121 (466)
T ss_pred CCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcc-ccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCCcHHHHH
Confidence 5778999988852 3343 6889999999887632111 111124556667777765432 12358999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHc-CC------------EEEEecCCCCC--CCCC--------CH
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIA-DA------------TPVILPTRISE--NFLL--------DP 218 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~-g~------------~~~~v~~~~~~--~~~~--------d~ 218 (429)
.+++.... +| .+|+...-+|.+....+... |. .+..+|..... .+.. ++
T Consensus 122 ~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l 201 (466)
T PRK07030 122 VALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMF 201 (466)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHH
Confidence 99887521 23 56888888888765433322 21 12223321100 0001 24
Q ss_pred HHHHhhcc---cCCcEEEEcC-CCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc
Q 014172 219 KVLESKLT---EKSRLLILCS-PSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~---~~~~~i~l~~-p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+.+++.+. ++..+|++.- .+.-.|. ..+++.+++|.++|++| |+++|.||++.+|...|.. .....+.-..|
T Consensus 202 ~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~-g~llI~DEV~TGfGRtG~~-~a~~~~gv~PD- 278 (466)
T PRK07030 202 AHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRY-GVHLIHDEIAVGFGRTGTM-FACEQAGIRPD- 278 (466)
T ss_pred HHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCcCccccc-hHHHhcCCCCC-
Confidence 55666664 3455555543 2454565 55667899999999999 9999999999886433321 11111111112
Q ss_pred eEEEeccChhccccc-ceeeEEEcCHHHHHHHHH-------HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~-------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
+-+|+|.++ .| ..+|.+++++++.+.+.. .....+++.++++.+++.+.|+. .++ +++.+..+
T Consensus 279 ---iv~~gKgl~-gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~---i~~--~~l~~~~~ 349 (466)
T PRK07030 279 ---FLCLSKALT-GGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDI---FEQ--DNVIENNR 349 (466)
T ss_pred ---EEeeehhcc-CCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHH---HHh--cCHHHHHH
Confidence 455799998 88 499999999999887742 12334556788888888888874 111 12333334
Q ss_pred HHHHHHHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 366 ERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 366 ~~r~~l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
+.-+++.+.|++ .+.+.-++..|-| +-+.+..... ....+.. ......+.++++++ ||.+
T Consensus 350 ~~G~~l~~~L~~l~~~~~v~~vrG~Gl~-~gie~~~~~~-~~~~~~~~~~~~~~i~~~~~~~-Gvl~ 413 (466)
T PRK07030 350 ALARRMAEATAHLADHPHVAEVRQTGMI-LAIEMVQDKA-SKTPYPWQERRGLKVYQHALER-GALL 413 (466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeEeceeE-EEEEeccCcc-ccccCcchhHHHHHHHHHHHHC-CeEE
Confidence 444444444443 3434334455544 5555532100 0000000 00124677777776 8765
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-11 Score=130.25 Aligned_cols=315 Identities=15% Similarity=0.126 Sum_probs=179.2
Q ss_pred cCCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.|+.+||+..|...++- +|.+.+++.+.+....+. .. ...+....+++.+.+.... ..+.++++++|+++...+
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~--~~-~~~~~~~elae~L~~~~p~--~~~~v~f~~SGsEA~e~A 657 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTN--SR-FHYAAVAEFSERLAALAPD--GLDTVFLVNSGSEANDLA 657 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHhcccc--cc-ccCHHHHHHHHHHHHhCCC--CcCEEEEeCCchHHHHHH
Confidence 57889999988766663 799999999988753221 11 1234556666666654421 236899999999999999
Q ss_pred HHHhc--CCCCEEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCCC--CCCC-CC-----HHHHHhhcc-
Q 014172 172 VLAVC--SPGDEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRIS--ENFL-LD-----PKVLESKLT- 226 (429)
Q Consensus 172 l~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~~--~~~~-~d-----~e~l~~~l~- 226 (429)
++... .....|+..+-+|.+....+. ..+. .+..++.... ..|. .+ .+.+++.+.
T Consensus 658 lklAr~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~ 737 (972)
T PRK06149 658 IRLAWAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEE 737 (972)
T ss_pred HHHHHHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHH
Confidence 88432 122567777777776442221 1110 0122222110 0011 11 233333332
Q ss_pred -----cCCcEEEEcCCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEecc
Q 014172 227 -----EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (429)
Q Consensus 227 -----~~~~~i~l~~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (429)
+++.+|++.......| .+.+++.+++|.++|++| |+++|.||++.+|...|.....+..+.-..| +-+|
T Consensus 738 ~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~-g~llI~DEV~tGfGRtG~~~~a~e~~gv~PD----ivt~ 812 (972)
T PRK06149 738 LDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRAR-GGVCIADEVQVGYGRLGHYFWGFEQQGVVPD----IITM 812 (972)
T ss_pred HhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHc-CCEEEEEeehhcCCccCccchhhhhcCCCCC----EEEe
Confidence 2344555543344345 556778899999999999 9999999999775333321111211211112 3478
Q ss_pred ChhcccccceeeEEEcCHHHHHHHHHH-hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--
Q 014172 301 SKAFAMTGWRLGYIAGPKHFVAACNKI-QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 377 (429)
Q Consensus 301 SK~~~~~G~R~G~v~~~~~~~~~l~~~-~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-- 377 (429)
+|.+| .|..+|.+++.+++.+.+... ....+++.++++.+++.+.|+. .++ +++.+..++.-+++.+.|++
T Consensus 813 gK~lg-~G~Pl~av~~~~~i~~~~~~~~~~~sT~~gnP~~~aaala~L~~---i~~--e~l~~~~~~~G~~l~~~L~~l~ 886 (972)
T PRK06149 813 AKGMG-NGHPLGAVITRREIAEALEAEGYFFSSTGGSPVSCRIGMAVLDV---LRE--EKLQENARRVGDHLKARLEALA 886 (972)
T ss_pred ccccc-CCeeeEEEEEcHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 889999999999998887641 1123346788888888888874 111 12333333344444444443
Q ss_pred --CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 --LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 --l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+-+..++..|-| +-+.+-...... +. .......++++|+++ ||.+
T Consensus 887 ~~~~~i~~vrG~Gl~-~gvel~~~~~~~-~~--~~~~~~~i~~~l~~~-Gvl~ 934 (972)
T PRK06149 887 DRHPLIGAVHGMGLY-LGVELVRDRQTL-EP--ATEETAAICDRLLEL-GVIM 934 (972)
T ss_pred HhCCCeEEEeecceE-EEEEEecCcccC-CC--ChHHHHHHHHHHHhC-CeEE
Confidence 3333344455544 555552100000 00 001245788888876 8875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-11 Score=125.48 Aligned_cols=275 Identities=17% Similarity=0.167 Sum_probs=171.2
Q ss_pred CCCCC---CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEec-ChHHHHHHHHHHhc----CCC----CEEEEcCCCCCChH
Q 014172 126 TRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQSILQAVLAVC----SPG----DEVIIPAPFWVSYP 193 (429)
Q Consensus 126 ~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~-G~~~al~~~l~~l~----~~g----d~Vlv~~p~y~~~~ 193 (429)
+-|.| .+|+.++...+.+++.+..|.+. +.+-. +++.+....++++. .+| ++|+++.-.|....
T Consensus 530 hPyqp~e~sQG~lq~i~elq~~l~eLtGmd~----~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNp 605 (954)
T PRK12566 530 HPFAPREQAEGYRAMIDELEAWLCAITGFDA----ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNP 605 (954)
T ss_pred CCCCchhhhcCHHHHHHHHHHHHHHHHCCCe----EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCH
Confidence 66777 78999999999999998888543 34444 44544544555542 222 67889998887667
Q ss_pred HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccC
Q 014172 194 EMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI 270 (429)
Q Consensus 194 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Dea 270 (429)
..+...|++++.++.+++ +.+|+++|++.++ +++.+|.+.+|++-++.. +.+++|+++|+++ |.+|++|.+
T Consensus 606 asa~~~GieVv~Vp~D~~--G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e---~~V~eI~~iah~~-Galv~vDgA 679 (954)
T PRK12566 606 ASAQMAGMRVVIVECDPD--GNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYE---EGIREICEVVHQH-GGQVYMDGA 679 (954)
T ss_pred HHHHHCCCEEEEeccCCC--CCcCHHHHHHHhhccCCCEEEEEEEecCcCceec---chHHHHHHHHHHc-CCEEEEEee
Confidence 778889999999999743 4699999999987 577777888888754443 4499999999999 999999999
Q ss_pred CcccccCCCCCCccccCCCCCCceEEEeccChhccc----ccceeeEEEcCHHHHHHHHHHhh---------cc---cCC
Q 014172 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVAACNKIQS---------QF---TSG 334 (429)
Q Consensus 271 y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~R~G~v~~~~~~~~~l~~~~~---------~~---~~~ 334 (429)
+..-. . .+ ..++..+.+|++++++|+|+. .|.-+|.+...+++...+.++-. .. ..+
T Consensus 680 ~~~a~-~-----~l-~~Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~ 752 (954)
T PRK12566 680 NLNAQ-V-----GL-ARPADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAP 752 (954)
T ss_pred Chhhc-c-----CC-CChhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecc
Confidence 85211 0 11 111234667999999998852 24445665555555544443210 00 111
Q ss_pred Cch-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEE--EecCCccCCcccCCCCCC
Q 014172 335 ASS-ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 335 ~~~-~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~--~~l~~~~~~~~~~~~~~~ 411 (429)
.+. ....++..++.. .+.+ +.+....-..+.+++.++|.+..++.+.++.+.+|-- +++..... ..+ .
T Consensus 753 ~gsa~~l~~A~~Yi~~--lG~e-Lk~aa~~ailnAnYla~rL~~~~~v~~~~~~~~~~hEfii~~~~l~~--~~g----~ 823 (954)
T PRK12566 753 WGSASILPISWMYIAM--MGPQ-LADASEVAILSANYLANQLGGAFPVLYRGRNERVAHECILDLRPLKA--QTG----I 823 (954)
T ss_pred cchHHHHHHHHHHHHH--HCHH-HHHHHHHHHHHHHHHHHHhHhhCCCCcCCCCCCeeeEEEEEcccccc--ccC----C
Confidence 111 112233333332 1344 6566665567888999999774355553333332221 33321100 001 3
Q ss_pred ChHHHHHHHHHhCCee
Q 014172 412 NSESLCRYLLDKAQVL 427 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~ 427 (429)
+..+++++|+ ++|+.
T Consensus 824 ~~~dvakRL~-d~Gih 838 (954)
T PRK12566 824 SEEDVAKRLM-DYGFH 838 (954)
T ss_pred CHHHHHHHHH-HCCcE
Confidence 6788999999 44764
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-12 Score=119.28 Aligned_cols=237 Identities=19% Similarity=0.230 Sum_probs=166.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 211 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 211 (429)
.|..++.+.+.+.++++.| .++.+++.-|- ......+.+++.||..|+..+..|.+....+++.|+.++.+..+
T Consensus 178 ~G~~~~hkelE~l~A~f~g---~e~a~vF~mGf-~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN-- 251 (519)
T KOG1357|consen 178 AGTTEEHKELEELVARFLG---VEDAIVFSMGF-ATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN-- 251 (519)
T ss_pred cccHHHHHHHHHHHHHhcC---CcceEEEeccc-cccccCcceeecCCcceeeccccchheeccccccCceEEEEecC--
Confidence 4667777777777777766 56778888882 22344578899999999999999999999999999999998863
Q ss_pred CCCCCCHHHHHhhcc-------cCC-----cEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC
Q 014172 212 ENFLLDPKVLESKLT-------EKS-----RLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP 278 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~-------~~~-----~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~ 278 (429)
|.+.||+.|+ +++ |.++ +..-...-|.+.. +.+++++++++ ...++.||+++-..-+.
T Consensus 252 -----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~---Lp~vvalkkky-kayl~lDEAHSiGA~g~ 322 (519)
T KOG1357|consen 252 -----DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD---LPEVVALKKKY-KAYLYLDEAHSIGAMGA 322 (519)
T ss_pred -----CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc---cHHHHHhhccc-cEEEEeeccccccccCC
Confidence 5566665553 222 3444 3444567788888 99999999999 99999999999654432
Q ss_pred CCCCccccC--CCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc---cCCCchHHHHHHHHHHhc--CC
Q 014172 279 ATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF---TSGASSISQKAGVAALGL--GY 351 (429)
Q Consensus 279 ~~~~~~~~~--~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~---~~~~~~~~q~aa~~~l~~--~~ 351 (429)
.+ .....+ .+..+.+|.+++|.|++|..| ||+.+++++++.++...... ++.++...|... ..+.. +.
T Consensus 323 tG-rgvce~~g~d~~dvDImMGtftKSfga~G---Gyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~-ssl~~i~G~ 397 (519)
T KOG1357|consen 323 TG-RGVCEYFGVDPEDVDIMMGTFTKSFGAAG---GYIAGSKELIDYLRTPSPSALYATSLSPPVAQQIL-TSVKHIMGE 397 (519)
T ss_pred CC-cceeeccCCCchhheeecceehhhccccc---ceecCcHHHHhhhccCCCceeecccCChHHHHHHH-HHHHhhcCC
Confidence 11 122222 122466789999999999888 99999999999987543222 222344444433 33321 21
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCce
Q 014172 352 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389 (429)
Q Consensus 352 ~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~ 389 (429)
...+..++..+++.+++.+++..|++. |+-+......
T Consensus 398 dgt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dS 434 (519)
T KOG1357|consen 398 DGTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDS 434 (519)
T ss_pred CcccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCC
Confidence 234556778888999999999999987 7777654444
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-11 Score=129.70 Aligned_cols=314 Identities=12% Similarity=0.081 Sum_probs=181.8
Q ss_pred cCCCeEEcCCCCCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.|+..||+..|...++- +|.+.+++.+.+.+..... ....+....+|+.+.+.... ..+.+++++++++++..+
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~---~~~~~~~~~lAe~L~~~~p~--~~~~v~f~nSGsEA~e~A 696 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNT---RYLHDAIVAYAERLTATLPD--GLTVAFFVNSGSEANSLA 696 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcC---CcCCHHHHHHHHHHHHhCCC--CcCEEEEeCCcHHHHHHH
Confidence 47788999888655555 7999999999887531111 11234556666666654331 236899999999999999
Q ss_pred HHHhcC-CC-CEEEEcCCCCCChHHHHHH-cC------------CEEEEecCCC--CCCCCC-C-------HHHHHhhcc
Q 014172 172 VLAVCS-PG-DEVIIPAPFWVSYPEMARI-AD------------ATPVILPTRI--SENFLL-D-------PKVLESKLT 226 (429)
Q Consensus 172 l~~l~~-~g-d~Vlv~~p~y~~~~~~~~~-~g------------~~~~~v~~~~--~~~~~~-d-------~e~l~~~l~ 226 (429)
++.... .| ..|+...-+|.+....+.. .| ..+..++... ...|.. + .+.+++.+.
T Consensus 697 lklAr~~tGr~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~ 776 (1013)
T PRK06148 697 LRLARAHTGQRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIA 776 (1013)
T ss_pred HHHHHHhcCCCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHH
Confidence 887642 23 6788888888875432221 11 0111111110 001110 1 134444442
Q ss_pred ------cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 227 ------EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 227 ------~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
.++.+|++.....-.|. ..+++.+++|.++|++| |+++|.||++.+|...|.....+..+. ..--+.+
T Consensus 777 ~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~-g~llI~DEVqtGfGRtG~~~~a~e~~g----v~PDivt 851 (1013)
T PRK06148 777 AMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAA-GGVCIADEVQVGFGRVGSHWWAFETQG----VVPDIVT 851 (1013)
T ss_pred hhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEEecccCCCCCCCcchhhhhcC----CCcceee
Confidence 23555555444444454 55777899999999999 999999999988643332111111111 1112566
Q ss_pred cChhcccccceeeEEEcCHHHHHHHHHHh-hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-
Q 014172 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE- 377 (429)
Q Consensus 300 ~SK~~~~~G~R~G~v~~~~~~~~~l~~~~-~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~- 377 (429)
++|.+| .|..+|.+++.+++++.+..-. ...+++.++++.+++.+.|+. .++ +++.+..++.-+++.++|++
T Consensus 852 ~gK~lg-gG~Plgav~~~~ei~~~~~~g~~~~~Tf~gnpla~aaa~a~L~~---i~~--e~l~~~~~~~G~~l~~~L~~l 925 (1013)
T PRK06148 852 MGKPIG-NGHPMGAVVTTREIADSFDNGMEYFNTFGGNPVSCAIGLAVLDI---IED--EDLQRNALEIGNYLLAGLREL 925 (1013)
T ss_pred eccccc-CCcceEEEEEcHHHHhhccCCCccccCCCCCHHHHHHHHHHHHH---Hhh--ccHHHHHHHHHHHHHHHHHHH
Confidence 899999 8999999999999988875321 235666788888888888874 111 12333334444444444444
Q ss_pred ---CCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 378 ---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 ---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
.+-+.-+...| +++-+.+..... .... ......+++.|+++ ||.+
T Consensus 926 ~~~~~~i~~VrG~G-l~~gvel~~~~~----~~~~~~~~~~~i~~~~~~~-Gvl~ 974 (1013)
T PRK06148 926 QDRFDIIGDVRGMG-LFLGIELVTDRK----TKAPATAIARYVKNGARER-GILI 974 (1013)
T ss_pred HHhCCCceEEeeec-eEEEEEecCCcc----ccCccHHHHHHHHHHHHhC-CeEE
Confidence 33233334444 445555532100 0000 00135677777765 8876
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.8e-11 Score=120.24 Aligned_cols=235 Identities=19% Similarity=0.191 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC-
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN- 213 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~- 213 (429)
.+..+.+|+.+ | .....++++|++.++..++++++.+||.||++.++|-+....+-++|+.++++.......
T Consensus 73 ~eAqe~aA~~f----g---Ad~tyFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~ 145 (557)
T COG1982 73 KEAQELAARVF----G---ADHTYFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLY 145 (557)
T ss_pred HHHHHHHHHHh----C---CCceEEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccc
Confidence 45555555554 4 445789999999999999999999999999999999999999999999999987543221
Q ss_pred ---CCCCHHHHHhhccc--CC-cEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc-cCCCCCCcccc
Q 014172 214 ---FLLDPKVLESKLTE--KS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFAS 286 (429)
Q Consensus 214 ---~~~d~e~l~~~l~~--~~-~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~~~ 286 (429)
..++.+.+++.+.. .. |++++++|+. .|++++ +++|.+.+... ++|+..|+++.... +.+..+ .
T Consensus 146 gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY-dGv~~n---~~~i~~~~~~~-~a~v~~deah~~~~~~~~~l~----~ 216 (557)
T COG1982 146 GIIGGIPLETFKEALLAHPDAEKLAVITNPTY-DGVCYN---LRKIVELLHHY-GAWVLYDEAHPAHFDFSPMLP----E 216 (557)
T ss_pred cccCCCCHHHHHHHHHhChhhheeEEEecCcc-ceEeec---HHHHHHHHhhc-CceEEhhhcCcccccccccCc----c
Confidence 45799999887743 34 7888999877 899999 89999999999 99999999987531 111111 1
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEEcCH--H-HHHHHHHHhhcccCCCchHHHHHHHHHHh--cCCCChHHHHHHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--H-FVAACNKIQSQFTSGASSISQKAGVAALG--LGYAGGEVVSKMV 361 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~--~-~~~~l~~~~~~~~~~~~~~~q~aa~~~l~--~~~~~~~~~~~~~ 361 (429)
.....+.++++.|.+|.++ +..-..++...+ . -.+++........++.+.....|.+.+-. .+..+++-.++..
T Consensus 217 ~~~~~~~~~~tqS~HK~l~-alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~~ 295 (557)
T COG1982 217 SALNGGADFVTQSTHKLLA-ALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVARMQEGNAGRELWQEVI 295 (557)
T ss_pred hhhhcCceEEEechhhhhh-hhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 1222577899999999985 333334444442 1 12334333333333333333333322211 1111122222334
Q ss_pred HHHHHHHHHHHHHhccCCCceeecC
Q 014172 362 KAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+..-+.|+.+.+.+.+++++.+..|
T Consensus 296 ~~~i~~r~~~~~~~~~~~~~~~~~~ 320 (557)
T COG1982 296 DEAIDFRKALRRLINEIGFFPVLQP 320 (557)
T ss_pred HHHHHHHHHHHHHHHhcCCeeeccc
Confidence 4445566667777766656655433
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-11 Score=119.77 Aligned_cols=273 Identities=16% Similarity=0.168 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----CCcEEEecChHHHHHHHHHHhcC--------
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-----PDQILVSNGAKQSILQAVLAVCS-------- 177 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-----~~~i~~t~G~~~al~~~l~~l~~-------- 177 (429)
..+.+.+...+......|...+...++++.+.+++.+.+|.+-. ...=++|+|+++++..++.+..+
T Consensus 54 ~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~ 133 (373)
T PF00282_consen 54 SILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKA 133 (373)
T ss_dssp HHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhh
Confidence 34455555566554555555556789999999999999997611 23568999999999877765421
Q ss_pred CC-----C-EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc---C--Cc-EEEEcCCCCCccCCC
Q 014172 178 PG-----D-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---K--SR-LLILCSPSNPTGSVY 245 (429)
Q Consensus 178 ~g-----d-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~--~~-~i~l~~p~NPtG~~~ 245 (429)
.| . .|++++-+|.+...++..+|+.++.||+++ ++.+|+++|++.+.. + +- +|+.+.+...||.+=
T Consensus 134 ~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGlg~~~I~~~~--~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D 211 (373)
T PF00282_consen 134 KGVEEIPKPVIYVSEQAHYSIEKAARILGLGVRKIPTDE--DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAID 211 (373)
T ss_dssp HTTTHCSSEEEEEETTS-THHHHHHHHTTSEEEEE-BBT--TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-
T ss_pred cccccccccccccccccccHHHHhcceeeeEEEEecCCc--chhhhHHHhhhhhcccccccccceeeeccCCCccccccc
Confidence 12 2 577777799999999999999999999975 567999999998853 2 22 445577788899997
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccC-CCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH-HHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAA 323 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-~~~~ 323 (429)
+ +++|.++|+++ ++|+.+|.+|++..+- +........+ ..-.=+..+++|.++ ....+|+++..++ ....
T Consensus 212 ~---l~~i~~i~~~~-~~wlHVDaA~gg~~~~~~~~~~~~~gi---~~adSit~d~HK~l~-~P~~~~~~l~r~~~~l~~ 283 (373)
T PF00282_consen 212 P---LEEIADICEKY-NIWLHVDAAYGGSALLSPEYRHLLFGI---ERADSITIDPHKWLG-VPYGCGVLLVRDKSDLRD 283 (373)
T ss_dssp S---HHHHHHHHHHC-T-EEEEEETTGGGGGGHCTTGGGGTTG---GGESEEEEETTTTTS--SSS-EEEEESSGGGHHG
T ss_pred C---HHHHhhhcccc-ceeeeeccccccccccccccccccccc---ccccccccchhhhhc-CCccceeEEeecccchHH
Confidence 7 99999999999 9999999999983321 1111111111 112235667899998 5578899887653 3332
Q ss_pred HH----HHhh-------------cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-
Q 014172 324 CN----KIQS-------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE- 385 (429)
Q Consensus 324 l~----~~~~-------------~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~- 385 (429)
.. .+.. ..+...+. ...++...+.....+.+.+.++.++..+..+++.+.|++.+++++..
T Consensus 284 ~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~ 362 (373)
T PF00282_consen 284 AFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNE 362 (373)
T ss_dssp GGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESST
T ss_pred HhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 11 0000 01112233 23333322222111467788888888899999999999998888864
Q ss_pred CCceEEEEEe
Q 014172 386 PQGAFYLFID 395 (429)
Q Consensus 386 p~~~~~~~~~ 395 (429)
|+-+. +.++
T Consensus 363 ~~~~~-vcFr 371 (373)
T PF00282_consen 363 PDLNI-VCFR 371 (373)
T ss_dssp TSSSE-EEEE
T ss_pred CCceE-EEEE
Confidence 55555 4443
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-11 Score=118.35 Aligned_cols=278 Identities=13% Similarity=0.066 Sum_probs=163.2
Q ss_pred CChHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEe-cChHHHHHHHHHHhcCCCCEEEE
Q 014172 108 DTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS-NGAKQSILQAVLAVCSPGDEVII 184 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t-~G~~~al~~~l~~l~~~gd~Vlv 184 (429)
..|+.+++++....... ...+++. ..++.+.+.+.+.+.++.+ +..+|+++ +|+|.+++.++..++.+ +.+++
T Consensus 13 ~~~~~v~~a~~~~~~~~~~~~hr~~~--f~~~~~~~r~~l~~l~~~~-~~~~v~f~~gs~T~a~~~~~~~l~~~-~~l~i 88 (361)
T TIGR01366 13 KVRLEQLQALTTTAASLFGTSHRQAP--VKNLVGRVREGLAELFSLP-DGYEVILGNGGATAFWDAATFGLIEK-KSLHL 88 (361)
T ss_pred CCCHHHHHHHHhcCccccccCcCChH--HHHHHHHHHHHHHHHhCCC-CCceEEEECCchhHHHHHHHHhcccc-cccEE
Confidence 34788888876431110 1223221 2344444444444444531 23478886 55999999999998743 33334
Q ss_pred cCCCCCC-hHHHHHHc--CCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 185 PAPFWVS-YPEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 185 ~~p~y~~-~~~~~~~~--g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
..-.|.. +...+... +.++..++... +..++. .+.+++++|.+++..|.||.+.| +++| ++++
T Consensus 89 ~~G~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~lV~~~h~et~tG~~~p---i~~I---~~~~- 154 (361)
T TIGR01366 89 SFGEFSSKFAKAVKLAPWLGEPIIVTADP--GSAPEP-----QADPGVDVIAWAHNETSTGVAVP---VRRP---EGSD- 154 (361)
T ss_pred ecCHHHHHHHHHHHhhhccCCceEEecCC--CCCCCC-----ccCCCCCEEEEcccCCccceecc---cccc---cccC-
Confidence 3434432 23344442 23666666532 222332 35678999999999999999999 5555 5788
Q ss_pred CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh------------
Q 014172 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS------------ 329 (429)
Q Consensus 262 ~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~------------ 329 (429)
|+++|+|.+.+. +..+..+.. ..+++.|-.|.+|.+| .++++++++++++.+.....
T Consensus 155 g~~~iVDavqs~----g~~~idv~~------~D~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~ 223 (361)
T TIGR01366 155 DALVVIDATSGA----GGLPVDIAE------TDVYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASGRWVPEFLSLP 223 (361)
T ss_pred CCeEEEEcCccc----cCCCCCHHH------CCEEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCCCCCchhhhHH
Confidence 999999999876 333333322 3488999999998764 26666778877766542110
Q ss_pred ---------cccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCceeecC-C---ceEEEEEe
Q 014172 330 ---------QFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEP-Q---GAFYLFID 395 (429)
Q Consensus 330 ---------~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-~---~~~~~~~~ 395 (429)
.+...++.....++.++++.- .+. .++...+++++..+++++.+.++++++.... . ......+.
T Consensus 224 ~~~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~ 301 (361)
T TIGR01366 224 TAVDNSLKNQTYNTPAIATLALLAEQIDWM--NGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTID 301 (361)
T ss_pred HHHhccccCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEE
Confidence 111223333333445555530 012 3667778889999999999999855554421 1 11111223
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++. .+..++...|.++ ||.+
T Consensus 302 ~~~g-----------~~~~~v~~~L~~~-gI~i 322 (361)
T TIGR01366 302 FVDD-----------IDAATVAKILRAN-GIVD 322 (361)
T ss_pred CCCc-----------cCHHHHHHHHHHC-CCee
Confidence 3321 2678888888554 8865
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.3e-13 Score=112.76 Aligned_cols=90 Identities=22% Similarity=0.406 Sum_probs=74.3
Q ss_pred eEEcCCCC---CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcC--CCCCCCcEEEecChHHHHHHH
Q 014172 97 VIRLAAGE---PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 97 ~i~L~~g~---~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~~t~G~~~al~~~ 171 (429)
+|.+++|+ |++.+|+.+++++.+. ..|++..|.++||+++|+|+.+.+| +++++++|++|+|+++++..+
T Consensus 59 li~~~i~~~p~~d~~~~~~i~~~~~~~-----a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l 133 (153)
T PLN02994 59 LIEEWIEENPHADICTAEGTIDSFKDI-----ALFQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEII 133 (153)
T ss_pred HHHHHHhCCCccccCCcHHHHHHHHHH-----hcCCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHH
Confidence 44444555 4555666556555552 3488889999999999999999988 678899999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCC
Q 014172 172 VLAVCSPGDEVIIPAPFWVS 191 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~ 191 (429)
++++++|||.|++++|+|++
T Consensus 134 ~~~l~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 134 MFCIADPGDAFLVPTPYYAA 153 (153)
T ss_pred HHHHcCCCCEEEEeCCCCCC
Confidence 99999999999999999974
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=120.81 Aligned_cols=240 Identities=17% Similarity=0.162 Sum_probs=155.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|+..|. ..++- +|++.+++.+.+....... ......+...++++.+.+..+. ..++++++++++++++
T Consensus 14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~-~~~~~~~~~~~la~~L~~~~p~--~~~~v~f~~sGseAve 90 (339)
T PF00202_consen 14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVS-FSGFTHPEAAELAEKLAELFPG--GLDRVFFANSGSEAVE 90 (339)
T ss_dssp TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCS-TTTSEEHHHHHHHHHHHHHSST--TEEEEEEESSHHHHHH
T ss_pred CCCEEEECCCCccceecCCCccccchhHHHHhhhccccc-ccceeccchhhhhhhhhhcccc--ccceeeeccCchHHHH
Confidence 567789998665 34444 6899999999887632211 2333456777788887776632 3469999999999999
Q ss_pred HHHHHhc------C-CC-CEEEEcCCCCCChHHHHHHc-C------------CEEEEecCCCCCCCCCCHHH--------
Q 014172 170 QAVLAVC------S-PG-DEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRISENFLLDPKV-------- 220 (429)
Q Consensus 170 ~~l~~l~------~-~g-d~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~~~~~d~e~-------- 220 (429)
.+++... . +| ..|+...-+|.+....+... + ..+..+|.+ ++..
T Consensus 91 ~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~~~~~~ 163 (339)
T PF00202_consen 91 AALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFP-------DPAADEEEQACL 163 (339)
T ss_dssp HHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETT-------CHHHHHHHHHHH
T ss_pred HHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCC-------ccchhhhHHHHH
Confidence 9998876 2 33 68998888888754322221 1 123455542 2222
Q ss_pred --HHhhc----ccCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc
Q 014172 221 --LESKL----TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 221 --l~~~l----~~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+++.+ .++..+|++...+.-.|.. .+.+.+++|.++|++| |+++|.||++..+...|.. .......-..
T Consensus 164 ~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~gRtG~~-~a~~~~gv~P-- 239 (339)
T PF00202_consen 164 NALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREH-GILLIADEVQTGFGRTGKF-FASEHYGVDP-- 239 (339)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHT-T-EEEEEETTTTTTTTSSS-SGHHHHTSSS--
T ss_pred HHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehccccccc-ccceecccccccccccCCc-cceecccccC--
Confidence 22222 3355566664445445644 4677899999999999 9999999999987444432 1111221111
Q ss_pred eEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
++ -+|+|.++ .|..+|.+++++++.+.+.......+++.+.++..++.+.|+.
T Consensus 240 Di--v~~gK~l~-gG~p~sav~~~~~i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~ 292 (339)
T PF00202_consen 240 DI--VTFGKGLG-GGLPISAVLGSEEIMEAFQPGSHGSTFGGNPLSCAAALATLEI 292 (339)
T ss_dssp SE--EEEEGGGG-TTSSEEEEEEEHHHHTTSCTTSSTCTTTT-HHHHHHHHHHHHH
T ss_pred cc--cccccchh-hhhhcccccccchhhccccccccccccccchHhhhhhhhHHHh
Confidence 23 44689998 7899999999999988775544445666788888888888874
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.2e-10 Score=114.88 Aligned_cols=249 Identities=16% Similarity=0.105 Sum_probs=149.8
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHH
Q 014172 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQS 167 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~a 167 (429)
..|+.+||+..|... ++- +|++.+++.+.+.+.....+ ..-..+.+..+|+.+.+..+..... ..++++++++++
T Consensus 55 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEA 133 (459)
T PRK06931 55 VEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHT-LDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADA 133 (459)
T ss_pred CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhccccc-cccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHH
Confidence 357889999888633 343 78999999998865321111 1122466667777776554311011 234666899999
Q ss_pred HHHHHHHhc--CCCCEEEEcCCCCCChHHHHHHc-C------------CEEEEecCCCCCC--CC----CCHHHH----H
Q 014172 168 ILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-D------------ATPVILPTRISEN--FL----LDPKVL----E 222 (429)
Q Consensus 168 l~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g------------~~~~~v~~~~~~~--~~----~d~e~l----~ 222 (429)
.+.+++... .....|+...-+|.+....+... | ..+..+|...... +. -+.+.+ +
T Consensus 134 ve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (459)
T PRK06931 134 VEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFE 213 (459)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHH
Confidence 998888753 22367888888888876554422 1 1122333221000 00 022322 2
Q ss_pred hhcc------cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceE
Q 014172 223 SKLT------EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295 (429)
Q Consensus 223 ~~l~------~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i 295 (429)
+.+. ++..+|++...+.-.|.+ .+.+.+++|.++|++| |+++|.||+..+|...|.. .....+.-..|
T Consensus 214 ~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~-g~LlI~DEV~tGfGRtG~~-~a~~~~gv~PD--- 288 (459)
T PRK06931 214 NFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKH-GILLIVDEVQAGFARTGKM-FAFEHAGIEPD--- 288 (459)
T ss_pred HHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecchhcCCcCchH-HHhhhcCCCCC---
Confidence 2322 235566664444445654 5678899999999999 9999999999987433321 11111111112
Q ss_pred EEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc
Q 014172 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 296 ~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
+-+++|.++ .|..+|.+++.+++ +.+.......+++.++++.+++.+.|+.
T Consensus 289 -ivt~gK~l~-gG~Pi~av~~~~~~-~~~~~~~~~~T~~gnpla~aaala~L~~ 339 (459)
T PRK06931 289 -IIVMSKAVG-GGLPLAVLGIKKEF-DAWQPGGHTGTFRGNQLAMATGLTTLKI 339 (459)
T ss_pred -EEEeccccc-CCcceeeeeeHHHH-hhccCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 556899998 78999988877663 5543333344666788888888888874
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-10 Score=115.23 Aligned_cols=310 Identities=11% Similarity=0.076 Sum_probs=169.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHH--HHHHHHHcCCCCC-CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAE--AGINAIREGFTRY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~--a~~~~~~~~~~~Y-~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
.|+.+||+..|. ..++- +|++.+ ++.+.+.+-.... +...-..+....+++.+.+..+. -..+.|++++++++
T Consensus 43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p-~~~~~v~f~~SGsE 121 (443)
T PRK08297 43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGD-PELPHLFFVDGGAL 121 (443)
T ss_pred CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCC-CCCCEEEEeCchHH
Confidence 477889988775 33443 688888 8888875421111 01111223444466665544321 12369999999999
Q ss_pred HHHHHHHHhcC--------CC------CEEEEcCCCCCChHHHHHHc-CCEEE-----------EecCCC------CCCC
Q 014172 167 SILQAVLAVCS--------PG------DEVIIPAPFWVSYPEMARIA-DATPV-----------ILPTRI------SENF 214 (429)
Q Consensus 167 al~~~l~~l~~--------~g------d~Vlv~~p~y~~~~~~~~~~-g~~~~-----------~v~~~~------~~~~ 214 (429)
+++.+++.... .| .+|+...-+|.+....+... |.... .++... ..+.
T Consensus 122 Ave~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (443)
T PRK08297 122 AVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDL 201 (443)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCccccc
Confidence 99999887621 12 56999998888866544432 21110 011000 0000
Q ss_pred -CC------CHHHHHhhcc---cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCc
Q 014172 215 -LL------DPKVLESKLT---EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283 (429)
Q Consensus 215 -~~------d~e~l~~~l~---~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~ 283 (429)
.. +++.+++.+. +++.+|++...+.-.|.. .+++.+++|.++|++| |+++|.||++.+|...|.. ..
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~-g~llI~DEV~tGfGRtG~~-~a 279 (443)
T PRK08297 202 EEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEH-DALLIFDEVQTGVGLTGTA-WA 279 (443)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEechhhccCccchH-HH
Confidence 00 2345556664 355666664445445654 6778899999999999 9999999999886443321 11
Q ss_pred cccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH-----HhhcccCCCchHHHHHHHHHHhcCCCChHHHH
Q 014172 284 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358 (429)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~-----~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~ 358 (429)
...+.-..| +-+|+|.++ +|.+++..++.+.... .....+++.+.++..++.+.|+.-. .++.++
T Consensus 280 ~~~~gv~PD----iv~~gK~l~-----~~a~l~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~-~~~l~~ 349 (443)
T PRK08297 280 YQQLGVRPD----IVAFGKKTQ-----VCGIMAGRRVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIE-EDGLVE 349 (443)
T ss_pred HHhcCCCCC----EEEeccccc-----ccceecchHHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHH-hcCHHH
Confidence 111111112 335899975 2333344443222111 1133455678888888888887410 122233
Q ss_pred HHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 359 KMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..+.-+..++.+.+..++.+.+- .+++.| .++.+.++.. .....+++.|+++ ||.+
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G-~~~~i~~~~~-----------~~~~~~~~~l~~~-Gvl~ 407 (443)
T PRK08297 350 NAARQGEYLLARLEELAAEFPAVVSNVRGRG-LMCAFDLPTT-----------ADRDEVIRRLWEE-GVLV 407 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcceeeeccc-eEEEEEecCH-----------HHHHHHHHHHHHC-CEEE
Confidence 333333333333333333344332 345555 4466777532 1356788888865 8875
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-10 Score=112.37 Aligned_cols=290 Identities=13% Similarity=0.151 Sum_probs=186.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc----C-----CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE----G-----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~----~-----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
..++|+.|-. ..|++|++++.+.+.+ + ..+.+ .-..++.+.+.+.+.+.++.+-+.+-++++.|++.
T Consensus 7 ~~~~f~pGP~--~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs--~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~ 82 (365)
T PLN02452 7 RVFNFSAGPA--TLPANVLAKAQAELYNWEGSGMSVMEMSHRG--KEFLSIIQKAEADLRELLDIPDNYEVLFLQGGAST 82 (365)
T ss_pred ceEeeeCCCC--CCCHHHHHHHHHHHhcccccCccccccCCCc--hHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHH
Confidence 3567766643 3588999998877532 0 11222 22356777777888888884322234566678999
Q ss_pred HHHHHHHHhcCCCCEEEEcCCCCCC--hHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhcccCCcEEEEcCCCCCccC
Q 014172 167 SILQAVLAVCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRIS-ENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243 (429)
Q Consensus 167 al~~~l~~l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~ 243 (429)
++.+++..++.+||++++..-...+ +.+.++.+|...+....... ....+++++++. .++.+.|.+++-.-.||+
T Consensus 83 ~~ea~~~nl~~~~~~~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~hnETstGv 160 (365)
T PLN02452 83 QFAAIPLNLCKPGDKADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL--TPDAKFVHICANETIHGV 160 (365)
T ss_pred HHHHHHHhcCCCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC--CCCCcEEEECCCCCCCcE
Confidence 9999999999999988877755444 34667778874444422111 112467776532 346778888877778999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
.++. ++++. ++++|+|.+... +..+..+..+ + +.+.|..|.+|.+| +|++++++++++.
T Consensus 161 ~~~~--~~~i~-------~~~lvVDa~Ss~----g~~pidv~~~----~--v~~~saqK~lGP~G--l~~v~vr~~~l~~ 219 (365)
T PLN02452 161 EFKD--YPDVG-------NVPLVADMSSNF----LSKPVDVSKY----G--VIYAGAQKNVGPSG--VTIVIIRKDLIGN 219 (365)
T ss_pred ecCc--ccccC-------CCeEEEECCccc----cCcccCHHHc----C--EEEEecccccCCCC--eEEEEEcHHHHhh
Confidence 6331 43332 478899999875 2233333322 2 34469999999888 7999999888766
Q ss_pred HHHH------------hhcccCCCchHHHHHHHHHHhcCCCCh-H-HHHHHHHHHHHHHHHHHHHhccCCCcee--ecC-
Q 014172 324 CNKI------------QSQFTSGASSISQKAGVAALGLGYAGG-E-VVSKMVKAFRERRDFLVKSFGELEGVKM--SEP- 386 (429)
Q Consensus 324 l~~~------------~~~~~~~~~~~~q~aa~~~l~~~~~~~-~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~--~~p- 386 (429)
+... ...+..+++....+++..+|+. .. + .++.+.++++++.+++++.|++.+|+.. ..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~---l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~ 296 (365)
T PLN02452 220 ARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFED---LLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKS 296 (365)
T ss_pred cccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChH
Confidence 4321 0111235677777777777764 22 2 4888999999999999999998777611 111
Q ss_pred -CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 387 -QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 387 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.+.+-+.+.++.. ....+|.+.+.++ |+.
T Consensus 297 ~rs~~~vsF~~~~~-----------~~~~~f~~~~~~~-g~~ 326 (365)
T PLN02452 297 VRSLMNVPFTLGGS-----------ELEAEFVKEAAKA-GMV 326 (365)
T ss_pred HhCCeEEEEEcCCc-----------hhHHHHHHHHHHC-CCc
Confidence 3556677777653 2466777777655 654
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=109.04 Aligned_cols=177 Identities=18% Similarity=0.242 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEe---cChHHHHHHHHHHhcCCCCEEEEc-CCCCCChHHHH----------HHcCC
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVS---NGAKQSILQAVLAVCSPGDEVIIP-APFWVSYPEMA----------RIADA 201 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t---~G~~~al~~~l~~l~~~gd~Vlv~-~p~y~~~~~~~----------~~~g~ 201 (429)
.=|+.+.+.+.+.+| .+..++- .++|.+|..++..+++|||+++.. -.-|....+.+ +..|.
T Consensus 54 ~GRd~le~iyA~vfg----aE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi 129 (403)
T PF06838_consen 54 IGRDKLERIYADVFG----AEDALVRPQFVSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGI 129 (403)
T ss_dssp HHHHHHHHHHHHHCT-----SEEEEETTS-SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT-
T ss_pred ccHHHHHHHHHHHhC----chhhhhcccccchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCc
Confidence 456666666666666 2333433 379999999999999999998854 45577777665 45678
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEE-cCCCCCccCCCCHHHHHHHHHHHHh-CCCeEEEEccCCcccccCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPA 279 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l-~~p~NPtG~~~~~~~l~~I~~~a~~-~~~i~vi~Deay~~~~~~~~ 279 (429)
+...+++.++ ..+|++.+++++++++|+++| =+-..-+=..++.++++++++++++ +|++++++|.+|++|+-.
T Consensus 130 ~Y~~v~L~~d--g~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEFvE~-- 205 (403)
T PF06838_consen 130 KYREVPLTED--GTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEFVET-- 205 (403)
T ss_dssp EEEE--B-TT--SSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTTTSS--
T ss_pred eeEEEeecCC--CCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCcceeccc--
Confidence 9999998754 459999999999999999998 3444445566788899999998886 479999999999997632
Q ss_pred CCCccccCCCCCCceEEEeccChhcccccc--eeeEEEcCHHHHHHHHHH
Q 014172 280 THTSFASLPGMWERTLTVNGFSKAFAMTGW--RLGYIAGPKHFVAACNKI 327 (429)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~--R~G~v~~~~~~~~~l~~~ 327 (429)
..+.- .+..++.+|+-|..| .|+ --||+++.+++++.+...
T Consensus 206 ~EP~~------vGADl~aGSLIKNpG-GgiAptGGYIaGr~~lVe~~a~R 248 (403)
T PF06838_consen 206 QEPTE------VGADLMAGSLIKNPG-GGIAPTGGYIAGRKDLVERAAYR 248 (403)
T ss_dssp S-GGG------GT-SEEEEETTSGGG-TTT-SS-EEEEESHHHHHHHHHH
T ss_pred cCccc------cchhheeccceeCCC-CCccCcCCEEechHHHHHHHHhh
Confidence 22221 245599999999987 443 359999999999987654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-10 Score=113.84 Aligned_cols=279 Identities=12% Similarity=0.057 Sum_probs=175.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCCCC
Q 014172 113 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVS 191 (429)
Q Consensus 113 v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-~~gd~Vlv~~p~y~~ 191 (429)
+.+++.+.+-. ..++++ ...++.+.+.+.+.+.++.+-+.+-++++.|+|.++++++..++ ++||.|++.. .|..
T Consensus 19 ~~~~~~~~~~~-~~HRs~--~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~FG~ 94 (374)
T TIGR01365 19 SIEELKNAPLG-RSHRSK--LGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SFGK 94 (374)
T ss_pred hHHHHhhhhcc-cCcCCH--HHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HHHH
Confidence 55555544322 123333 34677777788888888843222335678889999999999999 5899988865 4443
Q ss_pred h-H-HHHHHcCC-EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 014172 192 Y-P-EMARIADA-TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (429)
Q Consensus 192 ~-~-~~~~~~g~-~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~D 268 (429)
- . ++++..|+ ++..+... -+..+|+++++. . +.|++++---.||+..+ +++|+.. .+ +.++|+|
T Consensus 95 r~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~--~---~~v~~vhnETSTGv~np---v~~i~~~--~~-~~lliVD 161 (374)
T TIGR01365 95 GWVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF--K---NDVVFTWNGTTSGVRVP---NGDFIPA--DR-EGLTICD 161 (374)
T ss_pred HHHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC--C---CCEEEecCCCchheecc---ccccccc--cC-CCcEEEE
Confidence 3 4 78888999 47777653 344589999973 1 23567777778999999 5544432 25 7899999
Q ss_pred cCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh--------------------
Q 014172 269 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-------------------- 328 (429)
Q Consensus 269 eay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~-------------------- 328 (429)
.+-+.. + .+..+. +-.+++.|-.|.++.|+ .+++++.+++.++......
T Consensus 162 avSs~g---~-~~l~~d------~iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~~~~ 230 (374)
T TIGR01365 162 ATSAAF---A-QDLDYH------KLDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKLNKK 230 (374)
T ss_pred ccchhc---C-CCCChh------HCcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChhhhccccccchhhh
Confidence 987752 1 222221 24588999999998543 4788888888776655211
Q ss_pred ---hcccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCC-ceeecC----CceEEEEEecCCc
Q 014172 329 ---SQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEG-VKMSEP----QGAFYLFIDFSTY 399 (429)
Q Consensus 329 ---~~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g-~~~~~p----~~~~~~~~~l~~~ 399 (429)
..+...++.....++..+|+. ..++ .++++.++++++.+.+++.++++ | +.+... .+...+.+.++..
T Consensus 231 ~~~~~t~~TP~v~~l~a~~~~l~~--i~~egGle~~~~Rh~~~a~~l~~~l~~l-g~l~~~~~~~~~rS~tvt~v~~~~~ 307 (374)
T TIGR01365 231 IFEGSTINTPSMLCVEDWLDALKW--AESIGGLKPLIARADDNLAVLEAFVAKN-NWIHFLAETPEIRSNTSVCLKVVDP 307 (374)
T ss_pred hhcCCCCCChHHHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCChhhcCCCeEEEEeCCc
Confidence 112223344444555555542 0122 58899999999999999999999 6 666542 2333344555431
Q ss_pred cCCcccCCCCCCC-----hHHHHHHHHHhCCeec
Q 014172 400 YGSEAEGFGKIEN-----SESLCRYLLDKAQVLL 428 (429)
Q Consensus 400 ~~~~~~~~~~~~~-----~~~~~~~Ll~~~gV~v 428 (429)
+..+ ..++ ..+|.+.|.++ ||.+
T Consensus 308 -~~~~----~~~~~~~~~~~~~~~~l~~~-gi~i 335 (374)
T TIGR01365 308 -AIDA----LDEDAQADFAKELISTLEKE-GVAY 335 (374)
T ss_pred -cccc----cccchhhHHHHHHHHHHHHC-CEEE
Confidence 0000 0002 46777776655 8865
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-10 Score=106.08 Aligned_cols=274 Identities=12% Similarity=0.066 Sum_probs=180.5
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCC--CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G--~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
.|+..||+..+... ++. .|++.+++.+......+-..+..- .-++.+.+.+.+ +- -..+.|++++++|+|
T Consensus 54 ~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~----~~-~~~~rvff~nsGTeA 128 (433)
T KOG1401|consen 54 DGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLEAVELEEVLSAVL----GK-GSAERVFFCNSGTEA 128 (433)
T ss_pred CcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHHHHHHHHHHHhcc----cC-CCccEEEEecCCcHH
Confidence 46778998888732 222 688999988876553111111111 123333333332 21 167899999999999
Q ss_pred HHHHHHHhcCC------CC--EEEEcCCCCCChH-HHHHHcCCEEEEecCCC---CC--CCCCCHHHHHhhcccCC---c
Q 014172 168 ILQAVLAVCSP------GD--EVIIPAPFWVSYP-EMARIADATPVILPTRI---SE--NFLLDPKVLESKLTEKS---R 230 (429)
Q Consensus 168 l~~~l~~l~~~------gd--~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~~---~~--~~~~d~e~l~~~l~~~~---~ 230 (429)
+..++..-.+- -+ .++....+|.+-. .++...+-.....|.++ +- ..--|.+.+++.++.+. .
T Consensus 129 ne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~Ia 208 (433)
T KOG1401|consen 129 NETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIA 208 (433)
T ss_pred HHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceE
Confidence 99988875321 12 3888888777644 33333333333333211 10 00017899999987643 6
Q ss_pred EEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccc
Q 014172 231 LLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (429)
Q Consensus 231 ~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 309 (429)
+|++.-.+--.|.. .++|.+..|.+.|+++ ++++|.||+..+|...|.. +....+...+| +.++.|.++ .|+
T Consensus 209 AVIvEPiqGaGG~~p~~peFl~~L~k~C~~~-~vl~I~DEV~tG~gR~g~~-~a~e~~~~~PD----I~t~aK~L~-gGl 281 (433)
T KOG1401|consen 209 AVIVEPIQGAGGIIPADPEFLIGLRKECDDN-GVLLIFDEVQTGLGRLGYG-WAQEYFGVTPD----ITTVAKPLG-GGL 281 (433)
T ss_pred EEEEecccCCCCcccCCHHHHHHHHHHHhhc-CceEEeehhhhCccccchH-HHHHHhCcCCc----ceeehhhcc-CCc
Confidence 66665556556644 4677899999999999 9999999999986544321 11111111112 677999999 999
Q ss_pred eeeEEEcCHHHHHHHHHHhh---cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 310 RLGYIAGPKHFVAACNKIQS---QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 310 R~G~v~~~~~~~~~l~~~~~---~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
.+|..++++++.+.+..-.. ..+++.++++..++...++.-. ..++++++.+.-+..|+.+.+.+.+-+
T Consensus 282 PigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~-~~e~~k~vs~~~k~L~~~l~e~~~~~~ 353 (433)
T KOG1401|consen 282 PIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELK-DPETLKNVSKIGKELRKLLDEYLKKTP 353 (433)
T ss_pred eeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999875433 5566778888888888887533 368888888888999999999988753
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-10 Score=119.65 Aligned_cols=299 Identities=13% Similarity=0.185 Sum_probs=179.2
Q ss_pred HHHHHHHHHHhcCCCeEE-cCCCCCCCCChHHHHHHHHHHHH--cCCCCCCCC--CCCH----HHHHHHHHHHHhhcCCC
Q 014172 82 AITDQATALAQAGVSVIR-LAAGEPDFDTPVLIAEAGINAIR--EGFTRYTPN--AGTL----ELRSAICHKLKEENGLS 152 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~~i~-L~~g~~~~~~p~~v~~a~~~~~~--~~~~~Y~~~--~G~~----~lr~~ia~~l~~~~g~~ 152 (429)
++.+..+++...+....+ ++.|.-+.-+|+.+.+++.+... ..++.|.+. +|.. +++..||+++ |
T Consensus 89 e~~~~~~~la~kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~Lt----G-- 162 (993)
T PLN02414 89 QMLEHMKSLASKNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLT----G-- 162 (993)
T ss_pred HHHHHHHHHHhcCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHh----C--
Confidence 444555555444432222 33444334457777777776443 223444443 4543 4555555554 5
Q ss_pred CCCCcEEEecChHHHHHHHHHHh-cCCC--CEEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 153 YTPDQILVSNGAKQSILQAVLAV-CSPG--DEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 153 ~~~~~i~~t~G~~~al~~~l~~l-~~~g--d~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
.+++++.++.|+|.+.+.+++++ +.+| |+|++++-.|+.+...+ +..|++++.++.... + ..
T Consensus 163 ~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~-----~------~~ 231 (993)
T PLN02414 163 LPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF-----D------YS 231 (993)
T ss_pred CChhhEeecCChHHHHHHHHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh-----c------cc
Confidence 57889999999999999887776 3544 78999999999887555 456999999986321 1 11
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF- 304 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~- 304 (429)
.+.+-.+++..|++ +|.+.+ +++|+++|+++ |+++++ .+... ... .+.. ++..+.+|++++..|..
T Consensus 232 ~~~v~~vlvq~P~~-~G~v~d---v~~I~~~ah~~-GaL~iV-aad~l-al~-----~l~~-pge~GADi~vgsgqKwg~ 298 (993)
T PLN02414 232 SGDVCGVLVQYPAT-DGEVLD---YAEFVKNAHAN-GVKVVM-ATDLL-ALT-----MLKP-PGEWGADIVVGSAQRFGV 298 (993)
T ss_pred cCceEEEEEecCCC-CeEEcC---HHHHHHHHHHc-CCEEEE-EECHH-Hhc-----CCCC-HhhccCcEEEECCCcccc
Confidence 12233444445544 999998 99999999999 899998 33322 011 1111 22346668999998886
Q ss_pred --ccccceeeEEEcCHHHHHHHH-HHhh---------c-------------ccCCCchH----HHHHHHHHHhcCCCChH
Q 014172 305 --AMTGWRLGYIAGPKHFVAACN-KIQS---------Q-------------FTSGASSI----SQKAGVAALGLGYAGGE 355 (429)
Q Consensus 305 --~~~G~R~G~v~~~~~~~~~l~-~~~~---------~-------------~~~~~~~~----~q~aa~~~l~~~~~~~~ 355 (429)
|..|.+.|++.+.+++.+.+- ++.. . ...+.+.+ +..+++++......+..
T Consensus 299 P~G~GGP~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~ 378 (993)
T PLN02414 299 PMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPE 378 (993)
T ss_pred CCCCCCCCeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccc
Confidence 335677999999887755331 0000 0 00112222 22223322211000235
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEE--EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 356 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++++.++..++..++.++|.+. |+++..+ .+| +.++++ +..++.++|.++ ||.+
T Consensus 379 Gl~~Ia~ri~~la~~l~~~L~~~-G~~~~~~--~~f~~vt~~~~--------------~~~~v~~~L~~~-gI~l 435 (993)
T PLN02414 379 GLKTIAQRVHGLAGVFAAGLKKL-GFQVQSL--PFFDTVKVKCS--------------DADAIADAAAKV-GINL 435 (993)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc-CCccCCC--CCcCeEEEecC--------------CHHHHHHHHHHC-CCee
Confidence 57788888888999999999876 7776533 233 233443 457888888766 7654
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.1e-10 Score=114.39 Aligned_cols=306 Identities=11% Similarity=0.037 Sum_probs=167.3
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHH-HHcCCCCCCCCCCCHHHHHHHHHHHH----hhcCCCCCCCcEEEecC
Q 014172 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINA-IREGFTRYTPNAGTLELRSAICHKLK----EENGLSYTPDQILVSNG 163 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~-~~~~~~~Y~~~~G~~~lr~~ia~~l~----~~~g~~~~~~~i~~t~G 163 (429)
..|+..||+..|... ++- +|.+.+++.+. ........ +... ......+++++. +... -..+.|+++++
T Consensus 55 ~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~-~~~~-~~~~~~la~~l~~~l~~~~p--~~~~~v~f~~S 130 (464)
T TIGR00699 55 VDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINR-PALG-NFPSKDWAKILKEGILKVAP--KGQDQVWTGMS 130 (464)
T ss_pred CCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhccc-ccCC-cHHHHHHHHHHHHhHHhhCC--CCcCEEEEeCC
Confidence 357889999988743 333 78999999874 23221111 1111 223344555443 2222 12368999999
Q ss_pred hHHHHHHHHHHhcC--------------------------CC---CEEEEcCCCCCChHHHHHHc-CCE-----------
Q 014172 164 AKQSILQAVLAVCS--------------------------PG---DEVIIPAPFWVSYPEMARIA-DAT----------- 202 (429)
Q Consensus 164 ~~~al~~~l~~l~~--------------------------~g---d~Vlv~~p~y~~~~~~~~~~-g~~----------- 202 (429)
++++++.+++.... +| ..|+....+|.+....+... |-.
T Consensus 131 GsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~ 210 (464)
T TIGR00699 131 GSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFD 210 (464)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCC
Confidence 99999999887621 11 26999998888765443322 211
Q ss_pred EEEecCCCC-CCC-----------CCCHHHHHhhcc---cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEE
Q 014172 203 PVILPTRIS-ENF-----------LLDPKVLESKLT---EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVL 266 (429)
Q Consensus 203 ~~~v~~~~~-~~~-----------~~d~e~l~~~l~---~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi 266 (429)
...+|.... ..+ .-+++.+++.+. .++.+|++.......|.+. +.+.+++|.++|++| |+++|
T Consensus 211 ~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~-g~lLI 289 (464)
T TIGR00699 211 WPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-NVAFI 289 (464)
T ss_pred ceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEE
Confidence 111222100 000 013556677764 2456666655566678766 678899999999999 99999
Q ss_pred EccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 014172 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 346 (429)
Q Consensus 267 ~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~ 346 (429)
.||++.++...|.. .....+.-...-+ +.+|+|.++ .| |+++..+ .+..........+++.++++..++.+.
T Consensus 290 ~DEV~tGfGrtG~~-fa~e~~gv~~~PD--i~t~gK~lg-~g---G~~~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~ 361 (464)
T TIGR00699 290 VDEVQTGVGATGKF-WAHEHWNLDDPPD--MVTFSKKFQ-TA---GYFFHDP-AFRPNKPYRQFNTWMGDPSRALILREI 361 (464)
T ss_pred EeeeeeCCCCCcch-hHHHhcCCCCCCC--EEEehhhhc-cC---Cccccch-hccCCCCcccccCCCCCHHHHHHHHHH
Confidence 99999876443321 1111111100011 466899996 33 4444432 111101112234556777788888777
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CC-Cceeec--CCceEEEEEecCCccCCcccCCCCCCChHHHHHH
Q 014172 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LE-GVKMSE--PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419 (429)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l~-g~~~~~--p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 419 (429)
|+. .++ +++.+..++.-+++.+.|++ +| -+.-++ .. |+++-+.++.. .....+.+.
T Consensus 362 L~~---l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~-Glm~gie~~~~-----------~~~~~i~~~ 424 (464)
T TIGR00699 362 IQE---IKR--KDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGR-GTFIAWDTPDE-----------AKRDKLLKK 424 (464)
T ss_pred HHH---HHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceeeecccCe-EEEEEEecCCH-----------HHHHHHHHH
Confidence 764 111 12233333333344444433 43 233333 33 45466676531 125678888
Q ss_pred HHHhCCeec
Q 014172 420 LLDKAQVLL 428 (429)
Q Consensus 420 Ll~~~gV~v 428 (429)
|+++ ||.+
T Consensus 425 ~~~~-Gvl~ 432 (464)
T TIGR00699 425 ARNN-GVNI 432 (464)
T ss_pred HHHC-CcEE
Confidence 8876 8875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-10 Score=119.22 Aligned_cols=302 Identities=16% Similarity=0.169 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCCe-EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCHHHHHHHHHHHHhhcCCCCCC
Q 014172 82 AITDQATALAQAGVSV-IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTP 155 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~~-i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~l~~~~g~~~~~ 155 (429)
++.+..+++.+..... ..++.|.-+.-.|+.+.+.+.+.-. -++.|+|- +|..+..-.....+.+..| .+.
T Consensus 62 e~~~~~~~la~~N~~~~~~ig~G~y~~~~P~vi~~~i~~~~~-~~t~ytPyQ~EisQG~Leal~~~Qt~la~LtG--~~~ 138 (954)
T PRK05367 62 EALAELRAIASKNKVFRSYIGQGYYGTHTPPVILRNILENPA-WYTAYTPYQPEISQGRLEALLNFQTMVADLTG--LEI 138 (954)
T ss_pred HHHHHHHHHHhcCCCCCcccCCCCCCCcCcHHHHHHHHhCcc-hhhccCCCChHHHHHHHHHHHHHHHHHHHHHC--CCh
Confidence 4444555555444321 2345555343346666565554211 13556653 4655544444444444456 577
Q ss_pred CcEEEecChHHHHHHHHHHh-cCC--CCEEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 156 DQILVSNGAKQSILQAVLAV-CSP--GDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 156 ~~i~~t~G~~~al~~~l~~l-~~~--gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
.|+.+..++|++.+.+++++ ..+ +|+|++++-.|+.+... ++..|++++.++.+. + ++ .++
T Consensus 139 anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~~~~~~~--d--~~--------~~~ 206 (954)
T PRK05367 139 ANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVVVGDAAK--A--LD--------HDD 206 (954)
T ss_pred hhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEEEecCcc--C--CC--------ccc
Confidence 89999999999999888776 344 48999999999987754 456899999998642 1 11 224
Q ss_pred CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc---c
Q 014172 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF---A 305 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~---~ 305 (429)
+.++++.+| |-+|.+.+ +++|+++|+++ |+++++|.....+.. ...++..+-+|++++..|.. |
T Consensus 207 ~~~vlvq~p-~~~G~i~d---~~~i~~~ah~~-Gal~~vda~~~Al~~--------l~~pge~GaDi~vgs~qkfg~P~g 273 (954)
T PRK05367 207 VFGVLLQYP-GTSGEVRD---YTALIAAAHAR-GALVAVAADLLALTL--------LTPPGEMGADIAVGSAQRFGVPMG 273 (954)
T ss_pred EEEEEEecC-CCCeeecc---HHHHHHHHHHc-CCEEEEEehhhhccC--------CCChhhcCCCEEEeeCcccCCCCC
Confidence 445556666 45999998 99999999999 999999875432211 11123356679999999871 2
Q ss_pred cccceeeEEEcCHHHHHHHHH-Hhh----------------------cccCCCchH----HHHHHHHHHhcCCCChHHHH
Q 014172 306 MTGWRLGYIAGPKHFVAACNK-IQS----------------------QFTSGASSI----SQKAGVAALGLGYAGGEVVS 358 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~-~~~----------------------~~~~~~~~~----~q~aa~~~l~~~~~~~~~~~ 358 (429)
..|...|++.+.+++.+.+.. +.. ....+.+.+ +..++.+.+-........++
T Consensus 274 ~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~ 353 (954)
T PRK05367 274 FGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLK 353 (954)
T ss_pred CCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHHHHHHhhhhHH
Confidence 345559999998887665420 000 000011111 11122222100000356688
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceeecCCceEE--EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 359 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFY--LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.++...+..++.++|++. |+++..+ .+| +.++++ .+..++.++|+++ ||.+
T Consensus 354 ~Ia~~~~~la~~l~~~L~~~-G~~~~~~--~~f~~~~~~~~-------------~~~~~i~~~l~~~-gi~~ 408 (954)
T PRK05367 354 AIARRVHRLAAILAAGLRAL-GLEVVHD--SFFDTLTVEVG-------------GDAAAVLARALAA-GINL 408 (954)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CcccCCC--CCCCeEEEeCC-------------CCHHHHHHHHHHC-Ccee
Confidence 88888899999999999874 8776533 232 223332 2678999999876 7654
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-10 Score=111.28 Aligned_cols=311 Identities=11% Similarity=0.089 Sum_probs=168.7
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHH--HHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIA--EAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~--~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
.|+..||+..|... ++- +|.+. +++.+.+.+.... .+...-..+....+++.+.+..+. -..+.+++++++++
T Consensus 36 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~v~f~~sGsE 114 (431)
T TIGR03251 36 DGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGD-PALPHLFFIEGGAL 114 (431)
T ss_pred CCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCC-CCcCEEEEeCCcHH
Confidence 47788888777633 333 67888 8888887653211 111111233334455555443211 13368999999999
Q ss_pred HHHHHHHHhcC--------C------CCEEEEcCCCCCChHHHHHH-cCCEEE---EecC--------C----C--CCCC
Q 014172 167 SILQAVLAVCS--------P------GDEVIIPAPFWVSYPEMARI-ADATPV---ILPT--------R----I--SENF 214 (429)
Q Consensus 167 al~~~l~~l~~--------~------gd~Vlv~~p~y~~~~~~~~~-~g~~~~---~v~~--------~----~--~~~~ 214 (429)
+++.+++.... . +.+|+...-+|.+....+.. .|.... ..|. . + ....
T Consensus 115 Ave~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 194 (431)
T TIGR03251 115 AVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNL 194 (431)
T ss_pred HHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCcccccc
Confidence 99999887631 1 36799999888876544332 221100 0110 0 0 0000
Q ss_pred C-------CCHHHHHhhcc---cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCc
Q 014172 215 L-------LDPKVLESKLT---EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283 (429)
Q Consensus 215 ~-------~d~e~l~~~l~---~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~ 283 (429)
. -+++.+++.+. +++.++++...+.-.|.. .+++.+++|.++|++| |+++|.||++.++...|.. ..
T Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tG~GrtG~~-~a 272 (431)
T TIGR03251 195 DQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEH-DALLIFDEVQTGVGLTGTA-WA 272 (431)
T ss_pred chhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecchhccCccchH-HH
Confidence 0 12344555553 456677775556666765 5777899999999999 9999999999976444321 11
Q ss_pred cccCCCCCCceEEEeccChhcccccceeeEEEcCH--HHHHHHHH--HhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 284 FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--HFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~--~~~~~l~~--~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
+..+.-..| ++ +++|.+. . .|++...+ ++...... .....+++.+.++.+++.+.|+.-. .+..+++
T Consensus 273 ~~~~gv~PD--i~--~~gK~~~-~---~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~-~~~l~~~ 343 (431)
T TIGR03251 273 YQQLGVQPD--IV--AFGKKTQ-V---CGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIE-EERLVDN 343 (431)
T ss_pred HHhcCCCCC--EE--EecccCc-c---ceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHH-hcCHHHH
Confidence 111111112 33 4889862 2 25554443 22221111 1123445567888888888887410 0112233
Q ss_pred HHHHHHHHHHHHHHHhccCCCc-eeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 360 MVKAFRERRDFLVKSFGELEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~-~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+.-+..++.+.+..++.+++ ..++.. |.++.+.++.. .....+++.|+++ ||.+
T Consensus 344 ~~~~g~~l~~~L~~l~~~~~~~i~~vrg~-G~~~~i~~~~~-----------~~~~~~~~~l~~~-Gvl~ 400 (431)
T TIGR03251 344 ARVQGAHLLARLHELAAEFPHLVSNPRGR-GLMCAFDLPST-----------ADRDEVIRQLYRE-GVLL 400 (431)
T ss_pred HHHHHHHHHHHHHHHHHhCccceeccccc-ceeEEEEeCCH-----------HHHHHHHHHHHhC-CeEE
Confidence 3444444444444433334422 223444 44466777532 1245788888865 8875
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.9e-10 Score=104.09 Aligned_cols=322 Identities=16% Similarity=0.200 Sum_probs=205.7
Q ss_pred HHHHHHHhcCCCeEEcCCCCCCCCC-----hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEE
Q 014172 85 DQATALAQAGVSVIRLAAGEPDFDT-----PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159 (429)
Q Consensus 85 ~~~~~~~~~g~~~i~L~~g~~~~~~-----p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~ 159 (429)
.+-+.+++.|.+..-|.+++-.... ...+.+....++-.+.-.|+.+.+...|..++.+.+ |. +.++
T Consensus 27 ~RE~al~~ag~N~F~l~Sedv~IDLLTDSGTgams~~qwaamm~GDEAYagsrs~~~L~~avkdif----Gf----q~~i 98 (471)
T COG3033 27 YREEALKKAGYNPFLLDSEDVFIDLLTDSGTGAMTDKQWAAMMRGDEAYAGSRSYYALADAVKDIF----GF----QYTI 98 (471)
T ss_pred HHHHHHHHcCCCeeeccccceEEEeeccCCcccccHHHHHHHhccchhhcccccHHHHHHHHHHhc----Cc----eeee
Confidence 3445566677777777666632111 123445555555566778999999999999998886 32 5678
Q ss_pred EecChHHHHHHHHHHhcCCCC-----EEEE-cCCCCCChHHHHHHcCCEEEEecCCCCC--------CCCCCHHHHHhhc
Q 014172 160 VSNGAKQSILQAVLAVCSPGD-----EVII-PAPFWVSYPEMARIADATPVILPTRISE--------NFLLDPKVLESKL 225 (429)
Q Consensus 160 ~t~G~~~al~~~l~~l~~~gd-----~Vlv-~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~~~~d~e~l~~~l 225 (429)
.|.-+..+-+.++..++++|+ ..++ ++-.|.......+..|+.++.++++... .+.+|++.|++.|
T Consensus 99 PthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~li 178 (471)
T COG3033 99 PTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLI 178 (471)
T ss_pred eccCCccHHHHHHHHHhhhccccCCccccccccceecchhHHHHhcCCccccccccccccccccCCCCCccCHHHHHHHH
Confidence 888777777777777766553 3333 3445556777888899998888765422 1458999999998
Q ss_pred cc----CCcEEEEc-CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccC-Cccccc------CCCCCCccccCCCC---
Q 014172 226 TE----KSRLLILC-SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIY------APATHTSFASLPGM--- 290 (429)
Q Consensus 226 ~~----~~~~i~l~-~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Dea-y~~~~~------~~~~~~~~~~~~~~--- 290 (429)
++ +.-.|+++ +.|.-.|...+.+.++++.++|++| ++.++.|.+ |.+-.| .+...+++..+...
T Consensus 179 devG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky-~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~s 257 (471)
T COG3033 179 DEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY-DIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYS 257 (471)
T ss_pred HHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc-CCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHh
Confidence 74 45556553 4455788999999999999999999 999999987 444333 12334455443110
Q ss_pred CCceEEEeccChhcccccceeeEEEcCHH----HHHHHHHHh-----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKH----FVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~R~G~v~~~~~----~~~~l~~~~-----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~ 361 (429)
+. .-...|.-|- |+.-+ .|++...++ +...++... .....+.+.-...+.+.-|.++. ..+|++...
T Consensus 258 Ya-D~~~mS~KKD-~lvnm-GGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYGgl~GrdmealAvGL~e~~-~~~yl~~Rv 333 (471)
T COG3033 258 YA-DGCTMSAKKD-GLVNM-GGFLCFKDDSFFDVYEECRTLVVVQEGFPTYGGLAGRDMEALAVGLREGV-NFDYLAHRV 333 (471)
T ss_pred hh-hhheeecccc-ceecc-ccEEEecCccHHHHHHHHHhheEeeccccccCcccchhHHHHHHHHHHhc-CcHHHHHHH
Confidence 00 0122333332 22211 167766654 455554332 12233345555555555555432 256666555
Q ss_pred HHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC-CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 362 KAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. ..++|.+.|++. |+.+..|.||.-+|++...... ..++.| .++.|+-.|..++||-.
T Consensus 334 ~----Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~eqF----paqala~ely~e~GiRa 392 (471)
T COG3033 334 A----QVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQF----PAQALACELYKEAGIRA 392 (471)
T ss_pred H----HHHHHHHHHHhc-CCeeEecCCCceEEeehhhhcCCCChhhC----cHHHHHHHHHHHhCeee
Confidence 4 345777888887 9999999999999998765433 234555 68899999999999864
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=108.33 Aligned_cols=304 Identities=20% Similarity=0.268 Sum_probs=198.6
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC-C------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG-F------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~-~------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|++++||++.+ ..+...+++.+.....+++- . .-|+...-..+|.+.||++++ .++.|+.+.|.
T Consensus 92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G-------~E~aivYs~gF 164 (467)
T KOG1358|consen 92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMG-------TEDAIVYSYGF 164 (467)
T ss_pred cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhC-------Ccceeeecccc
Confidence 577899998776 66666788888888877652 1 225444445678888888874 56788888887
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC-------------CcE
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK-------------SRL 231 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~-------------~~~ 231 (429)
+. +..++.++++.||.|.+.+-........+++..-.++.+..+ |.++++..+.+. .+.
T Consensus 165 ~t-i~S~ipafsKrGDIi~~de~~nfaIq~GlqlSRS~i~~Fkhn-------dm~~lerll~E~~~~~~K~~k~~~~Rrf 236 (467)
T KOG1358|consen 165 ST-IESAIPAFSKRGDIIFVDEAVNFAIQKGLQLSRSTISYFKHN-------DMEDLERLLPEQEDEDQKNPKKALTRRF 236 (467)
T ss_pred ch-hhhcchhhhccCcEEEEehhhhHHHHHHHhhhhheeEEecCC-------CHHHHHHhccCcchhhhhccccccceEE
Confidence 65 666899999999999999988778888888888888888743 666666655321 234
Q ss_pred EEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC--CCCCccccCCCCCCceEEEeccChhcccccc
Q 014172 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (429)
Q Consensus 232 i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 309 (429)
|++..-.-+||...+ +.+|+++..+| ...||.||.|+..+.+. .+-......+ ..+..++++|+.-+++..|
T Consensus 237 iv~EGl~~N~g~i~p---l~~iv~lk~Ky-k~RvildEs~SfG~lg~~GrGvteH~~v~-~~~iDiv~~sm~~alas~G- 310 (467)
T KOG1358|consen 237 IVVEGLYANTGDICP---LPEIVKLKNKY-KFRVILDESLSFGVLGKTGRGVTEHFGVP-ITDIDIVTASMETALASGG- 310 (467)
T ss_pred EEEEeeccCCCcccc---cHHHHHHHhhh-eEEEEEecccccccccccCccccccCCCC-ccceeeeeecccccccccC-
Confidence 555555667999999 99999999999 99999999999766543 2222222222 2456689999998888666
Q ss_pred eeeEEEcCHHHHH--HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-C
Q 014172 310 RLGYIAGPKHFVA--ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-P 386 (429)
Q Consensus 310 R~G~v~~~~~~~~--~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p 386 (429)
||.++..-+++ ++......+..+.++....++..++.. .+|-.++.+.++.....+.+.|+...++.+.. +
T Consensus 311 --gFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i----~~~~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~~ 384 (467)
T KOG1358|consen 311 --GFCAGKSFIADHQRLSGSGYCFSASLPPYLAGAAIKAILI----EEWNPEIVQPLRAKVAKFHAALSSNSGFIVSGSP 384 (467)
T ss_pred --ceeecceeeEeeeeccccceeeeccCchhhhhhHHHHHHH----HhhCcchhhhhhccccccchhhhcCCceEEecCc
Confidence 88887443322 222222222333455555555556653 45555566666766677777887765677764 4
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+ +.+.+....+.+... ..--++++++++.+ |+++
T Consensus 385 ~SPi-~hl~l~~~~~s~e~e---~~lL~eivd~~i~~-~~ll 421 (467)
T KOG1358|consen 385 ESPI-IHLQLERSYGSREKE---EKLLEEIVDKCIAE-GVLL 421 (467)
T ss_pred CCce-eeeeecccccchHHH---HHHHHHHHHHHHhh-ccee
Confidence 4444 556665432211000 00124666777766 6654
|
|
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.8e-09 Score=112.77 Aligned_cols=319 Identities=13% Similarity=0.094 Sum_probs=181.1
Q ss_pred CeEEcCCCC--CCCC--ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGE--PDFD--TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~--~~~~--~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
..+|...|. ..+. .++++.+++.+++.+-. .+....-..+-...+|+.|.+..+.+ ..++|+++++|+++++.+
T Consensus 366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~-hv~~~~~~hepa~~LAe~L~~~~~~~-~l~rVffs~sGSeAvE~A 443 (817)
T PLN02974 366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYG-HVMFPENVHEPALRAAELLLGGPGKG-WASRVFFSDNGSTAIEVA 443 (817)
T ss_pred eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCC-ccccCccCCHHHHHHHHHHHhccCCC-CCCEEEECCchHHHHHHH
Confidence 577777664 3344 37899999999887622 22111123456666777776532200 135899999999999988
Q ss_pred HHHhcC-----C----------------CCEEEEcCCCCCChHHHHHHcCCE---------------EEEecCC------
Q 014172 172 VLAVCS-----P----------------GDEVIIPAPFWVSYPEMARIADAT---------------PVILPTR------ 209 (429)
Q Consensus 172 l~~l~~-----~----------------gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~v~~~------ 209 (429)
++...+ . ..+||....+|++-...+..++.. ...++..
T Consensus 444 lKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~ 523 (817)
T PLN02974 444 LKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRN 523 (817)
T ss_pred HHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcccccc
Confidence 876521 1 235888888888644332222210 0011100
Q ss_pred -------CCC----------CCC-----CC------------HHHHHhhcc--------cCCcEEEEcCC-CCCccCCC-
Q 014172 210 -------ISE----------NFL-----LD------------PKVLESKLT--------EKSRLLILCSP-SNPTGSVY- 245 (429)
Q Consensus 210 -------~~~----------~~~-----~d------------~e~l~~~l~--------~~~~~i~l~~p-~NPtG~~~- 245 (429)
+.+ .|. .| .+.+++.+. ++..+|++.-. +.-.|.++
T Consensus 524 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~ 603 (817)
T PLN02974 524 GRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLI 603 (817)
T ss_pred ccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccC
Confidence 000 000 00 244565553 13444444332 56667765
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAAC 324 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l 324 (429)
+++.+++|.++|++| |+++|.||++.+|...|... ....+.-..| +-+++|.++ .| +.+|.+++++++.+.+
T Consensus 604 ~~~yl~~lr~lc~~~-gilLI~DEV~TGfGRtG~~f-a~e~~gv~PD----Ii~~gKgLt-gG~~Plaa~l~~~~I~~~f 676 (817)
T PLN02974 604 DPLFQRALVQVCRSR-KIPVIFDEVFTGLWRLGVES-AWELLGCKPD----IACYAKLLT-GGLVPLAATLATEEVFEAF 676 (817)
T ss_pred CHHHHHHHHHHHHHh-CCEEEEeecccCCCcccchh-hHHhcCCCCC----EEeeccccc-CCCCccEEEEEcHHHHHhh
Confidence 677899999999999 99999999999875444321 1111111111 556999998 88 6999999999999988
Q ss_pred HH------HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH----HHhccCCCceeecCCceEEEEE
Q 014172 325 NK------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV----KSFGELEGVKMSEPQGAFYLFI 394 (429)
Q Consensus 325 ~~------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~----~~L~~l~g~~~~~p~~~~~~~~ 394 (429)
.. .....+++.++++.+++.+.|+.-. .++...++.+.-++..+++. +.|++.|.+.-++..|-| +-+
T Consensus 677 ~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~-~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg~Gl~-~~i 754 (817)
T PLN02974 677 RGPSKLDALLHGHSYTAHPMGCAAAAKALQWYK-DPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVSLGTV-LAL 754 (817)
T ss_pred ccccccCCcccCCCCCcCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEeeeeE-EEE
Confidence 52 1234566788999999988887511 12222333333333333333 344445555545555544 556
Q ss_pred ecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..... .+++ ...-...+.+.++.+.||.+
T Consensus 755 el~~~~~--~~~~-~~~~a~~v~~~~~~~~Gl~~ 785 (817)
T PLN02974 755 ELDAEGS--GSGY-SSLYARSVVRRLRREDGIYA 785 (817)
T ss_pred EEecCCc--cccc-chHHHHHHHHHHHHhCCEEE
Confidence 6532100 0111 00124567777773458864
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.7e-09 Score=100.97 Aligned_cols=230 Identities=19% Similarity=0.164 Sum_probs=157.5
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCCCCH--HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGTL--ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~--~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.+-+.|.+.+ .+++++++........ ..|.-..|.. .++ .+++.+ .+. ...+.++++++.+.++.+++.+
T Consensus 30 ~~t~lG~s~~--~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~-~~~~~~---~~~-~~aea~~ivnnn~aAVll~~~a 102 (395)
T COG1921 30 LMTNLGRSLY--SPEAIEAMKEAMRAPVELETDLKTGKRGARLT-ELAELL---CGL-TGAEAAAIVNNNAAAVLLTLNA 102 (395)
T ss_pred eeccCCCccC--CHHHHHHHHHHhcccceeeeecccchhhHHHH-HHHHHH---hcc-cchhheeeECCcHHHHHHHHhh
Confidence 3334455443 5788888888776531 2443333332 233 333333 232 2357899999999999999998
Q ss_pred hcCCCCEEE-----EcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEE-cCCCCCccCCCCHH
Q 014172 175 VCSPGDEVI-----IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL-CSPSNPTGSVYPKN 248 (429)
Q Consensus 175 l~~~gd~Vl-----v~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l-~~p~NPtG~~~~~~ 248 (429)
+.+++..|+ ++ +..+...+.++..|++++.+.... .....+++.+|++++++++- .+.|.+.=...+
T Consensus 103 l~~~~EvVis~g~lV~-gg~~~v~d~~~~aG~~l~EvG~tn----~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~-- 175 (395)
T COG1921 103 LAEGKEVVVSRGELVE-GGAFRVPDIIRLAGAKLVEVGTTN----RTHLKDYELAINENTALLLKVHSSNYGFTGMLS-- 175 (395)
T ss_pred hccCCeEEEEcccccc-CCCCChhHHHHHcCCEEEEecccC----cCCHHHHHHHhccCCeeEEEEeecccccccccc--
Confidence 887544443 33 577889999999999999998532 25889999999999998874 444432223335
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh
Q 014172 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328 (429)
Q Consensus 249 ~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~ 328 (429)
.++++++|++| ++.+|+|.+-+..+-. .+.+..... .+..++++|-.|.+| |.+.|.+++.+++++.+++..
T Consensus 176 -~~~l~~ia~~~-~lpvivD~aSg~~v~~---e~~l~~~la-~GaDLV~~SgdKllg--GPqaGii~GkKelI~~lq~~~ 247 (395)
T COG1921 176 -EEELVEIAHEK-GLPVIVDLASGALVDK---EPDLREALA-LGADLVSFSGDKLLG--GPQAGIIVGKKELIEKLQSHP 247 (395)
T ss_pred -HHHHHHHHHHc-CCCEEEecCCcccccc---ccchhHHHh-cCCCEEEEecchhcC--CCccceEechHHHHHHHHhhh
Confidence 78899999999 9999999998765431 122222222 355699999999985 889999999999999988765
Q ss_pred hcccCCCchHHHHHHHHHHhc
Q 014172 329 SQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~l~~ 349 (429)
-....-......++..++|+.
T Consensus 248 l~Ralrv~K~tla~l~~aLe~ 268 (395)
T COG1921 248 LKRALRVDKETLAALEAALEL 268 (395)
T ss_pred hhhhhhcCcHhHHHHHHHHHH
Confidence 444444566666666676664
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5e-09 Score=103.06 Aligned_cols=318 Identities=14% Similarity=0.101 Sum_probs=177.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+.+||--+|. ..++- .+++.+++.+.+.+-.+. .....+.+ -..+|+.|.+..+. -+-++|++++|+++++
T Consensus 42 ~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P--a~~LA~~L~~~aP~-~~l~~vFf~~sGSeAv 118 (449)
T COG0161 42 DGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP--AIELAEKLAELAPE-GGLDHVFFTDSGSEAV 118 (449)
T ss_pred CCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCch--HHHHHHHHHHhCCC-CCccEEEEeCCchHHH
Confidence 466677766665 22333 688999999988762111 11112223 44455555544331 1246999999999999
Q ss_pred HHHHHHhc-------CCC-CEEEEcCCCCCChHHHHHH-cC-------------CEEEEecCCC--C----CCCC----C
Q 014172 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRI--S----ENFL----L 216 (429)
Q Consensus 169 ~~~l~~l~-------~~g-d~Vlv~~p~y~~~~~~~~~-~g-------------~~~~~v~~~~--~----~~~~----~ 216 (429)
+.+++... +|. ..++.-..+|.+-...+.. .| ..+..+|... . +.+. -
T Consensus 119 EtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~ 198 (449)
T COG0161 119 ETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAE 198 (449)
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHH
Confidence 99988753 232 3488778888764322222 22 1122222211 0 1111 1
Q ss_pred CHHHHHhhccc---CCcEEEEcCC-C-CCccCCCCH-HHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 217 DPKVLESKLTE---KSRLLILCSP-S-NPTGSVYPK-NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 217 d~e~l~~~l~~---~~~~i~l~~p-~-NPtG~~~~~-~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
..++|++.+.. .+-+.+|.-| . --+|+.+++ ..|+++.++|++| |+++|.||+-.+|-..|.. +..-.
T Consensus 199 ~a~~le~~i~~~g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky-~ILlI~DEV~tGFGRTG~~---FA~e~-- 272 (449)
T COG0161 199 AADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY-GILLIADEVATGFGRTGKM---FACEH-- 272 (449)
T ss_pred HHHHHHHHHHhcCcccEEEEEecccccccCCcccCChHHHHHHHHHHHHc-CcEEEeecceeCCCcCchh---hhhhh--
Confidence 25566666643 4444455555 3 347766554 4799999999999 9999999998886544432 21110
Q ss_pred CCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH-----hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~-----~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
++..--+-+++|.+.-.=+.+|.+++.+++.+.+..- ....+++.++++.+++++.|+.-. .+.++++.+
T Consensus 273 ~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e-~e~l~~~~~---- 347 (449)
T COG0161 273 AGIVPDILCLAKGLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILE-EEDLLERVA---- 347 (449)
T ss_pred cCCCCCeeeecccccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHH-hcCHHHHHH----
Confidence 1111125568999873447788888899998888653 233466678888888888887511 133344444
Q ss_pred HHHHHHHHHhcc----CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 366 ERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 366 ~~r~~l~~~L~~----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.-.++.+.|++ .|.+.=++..| +..-+++-..... ...| ...-...+...++++ ||.+
T Consensus 348 ~~~~~l~~~L~~~l~~~p~VgdVR~~G-li~~iElv~d~~t-~~~f-~~~~~~~~~~~~~e~-Gl~i 410 (449)
T COG0161 348 EIGAYLQAGLQAALADHPLVGDVRGLG-LIGAIELVADKAT-KTPF-EARVGARVRAAALER-GLLI 410 (449)
T ss_pred HHHHHHHHHHHHhcccCCcEEEeeccc-eEEEEEEeccccc-ccch-hhhHHHHHHHHHHHC-CeEE
Confidence 444444444444 33343334444 3344555321110 0000 001245666666666 8765
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.8e-09 Score=97.66 Aligned_cols=295 Identities=15% Similarity=0.153 Sum_probs=190.1
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHH---HHcC----CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINA---IREG----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~---~~~~----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
...++|.|..|.....++....+....+ ..++ +++ ......++-+.+..++...-| ..+.+|+++.+++
T Consensus 28 lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~--a~~~W~~lp~~lgdklApLiG--A~~~Evvv~dtts 103 (407)
T COG3844 28 LPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNK--AKADWFDLPERLGDKLAPLIG--ARAGEVVVTDTTS 103 (407)
T ss_pred CCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcc--cCCchhhchhHHHHHhhhhhc--CCCCceEEeCCcc
Confidence 3457999998886655443333333322 2221 222 123445666677777766666 4678999999999
Q ss_pred HHHHHHHHHhcC--CCCEEEEcCC-CCCChH----HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 166 QSILQAVLAVCS--PGDEVIIPAP-FWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 166 ~al~~~l~~l~~--~gd~Vlv~~p-~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
-.++.++.+.++ +|+.|++++- +|++-. ..+...|.. +++ ...+.++++++++++++.+|++++.+
T Consensus 104 ~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~---~~~----~~~~~P~~~~~~~~dd~AvV~L~~V~ 176 (407)
T COG3844 104 INLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEGLADLLGIG---YDL----EGVIAPRALEEAITDDVAVVLLSHVN 176 (407)
T ss_pred hHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcchhhhhccc---ccc----eeeeChHHHHHhhccceEEEEecccc
Confidence 999988888764 4888888764 455433 334444433 111 12357889999999999999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEEEcC
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGP 317 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~ 317 (429)
.-||..++ +.+|-+++++| +++++.|-+|+.... +.. +. .++..+-|++-.|.++ -||.. +++.+.
T Consensus 177 y~TGql~d---m~aiT~~AH~~-galv~wDLAHsaGav----p~~---Lh-~~gaDfaigcsyKYLNgGPGap-a~l~v~ 243 (407)
T COG3844 177 YKTGQLLD---MRAITALAHQH-GALVGWDLAHSAGAV----PVD---LH-AAGADFAIGCSYKYLNGGPGAP-AGLFVA 243 (407)
T ss_pred ccccceee---HHHHHHHHHhc-CceEEeehhcccCCc----cee---ec-ccCCCeeeeeeceeccCCCCCc-eeEEec
Confidence 99999999 99999999999 899999999986322 212 22 2466688999999984 24443 444444
Q ss_pred HHHHHHHHH-----------------------HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 318 KHFVAACNK-----------------------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 318 ~~~~~~l~~-----------------------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
++..+.... ..+.....++.++..+...+|+... .-.+.+++++--...+++.+.
T Consensus 244 ~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa--~~~i~~lR~kSlaLTd~fieL 321 (407)
T COG3844 244 PRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFA--DVDITELRKKSLALTDYFIEL 321 (407)
T ss_pred cccccccccccccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhh--hcCHHHHHHhhhHHHHHHHHH
Confidence 333332211 1111223345555555556665421 222677888877888888888
Q ss_pred hccC-C--CceeecCCc----eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 375 FGEL-E--GVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 375 L~~l-~--g~~~~~p~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.. + ++++..|.. |-.+.+..| ...++++.|+++ ||..
T Consensus 322 vEa~~~~~~l~l~tPr~~~~rGsqvS~~hp--------------~~~~V~qaLi~r-GVig 367 (407)
T COG3844 322 VEARCEYYGLTLVTPRAHEERGSQVSLYHP--------------HGYQVMQALIDR-GVIG 367 (407)
T ss_pred HHhccccCCcEEeccchhhhccceeeEecC--------------cHHHHHHHHHHc-Cccc
Confidence 8763 3 577765543 233555554 578999999887 8763
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-09 Score=101.72 Aligned_cols=288 Identities=10% Similarity=0.077 Sum_probs=181.0
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHc--C-------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcE-EEecChHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIRE--G-------FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI-LVSNGAKQ 166 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~--~-------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i-~~t~G~~~ 166 (429)
.++|+.|-.. .|++|++++.+.+.+ + ..+.++ -..++.+.+.+.+++.++++-+ .+| +++.|++.
T Consensus 5 ~~nF~aGPa~--lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~--~F~~i~~~~~~~Lr~Ll~~P~~-y~Vlfl~GggT~ 79 (364)
T PRK12462 5 QLNFSGGPGA--LPDTVLEQVRQAVVELPETGLSVLGMSHRSS--WFSSLLAQAEADLRDLLGIPDE-YGVVFLQGGSSL 79 (364)
T ss_pred cceecCCCcC--CCHHHHHHHHHHHhcccccCccccccccccH--HHHHHHHHHHHHHHHHhCCCCC-CeEEEEeccHHH
Confidence 5666666543 478888888877643 1 122322 2356777777888888885322 355 45556999
Q ss_pred HHHHHHHHhcCCCCEEE--EcCCCCCC-hHHHHHHcCCEEEEecCCCC--CCCCCCHHHHHhhcccCCcEEEEcCCCCCc
Q 014172 167 SILQAVLAVCSPGDEVI--IPAPFWVS-YPEMARIADATPVILPTRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNPT 241 (429)
Q Consensus 167 al~~~l~~l~~~gd~Vl--v~~p~y~~-~~~~~~~~g~~~~~v~~~~~--~~~~~d~e~l~~~l~~~~~~i~l~~p~NPt 241 (429)
++.++...++.+||+++ +..-.|.. +...++.+| ++..+..... -+..++++.+ .+.++.+.|.+|+-.-.|
T Consensus 80 ~~ea~~~Nll~~g~~~~~~~~tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETst 156 (364)
T PRK12462 80 QFSMIPMNFSRPGAAAPEYVTTGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVE 156 (364)
T ss_pred HHHHHHHHcCCCCCcEEEEEeCCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCc
Confidence 99999999999999654 44444432 335666666 5544432111 1234566665 234467777777777789
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHH
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~ 321 (429)
|+.++ ++.+.+ +.++|+|.+-..+ ..+..+..+ .++..+.-|.+|.+| ++.++.+++++
T Consensus 157 Gv~~~--------~~~~~~-~~llvvD~sS~~~----s~pid~~~~------dvi~agsQKnlgP~G--ltvvivs~~al 215 (364)
T PRK12462 157 GLQFP--------DAAGLP-DSPLIADMSSDFM----SRPFDVEAY------GMVYAHAQKNLGPAG--VTVAIIRRALL 215 (364)
T ss_pred eEecC--------cccccC-CCeEEEEcCchhh----CCCCChHHc------cEEEeeccccCCCCc--eEEEEECHHHH
Confidence 99986 233346 7899999887652 222222222 488888999999777 67888888877
Q ss_pred HHHHHH------------hhcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCceee---
Q 014172 322 AACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMS--- 384 (429)
Q Consensus 322 ~~l~~~------------~~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~~~~--- 384 (429)
+..... ......+|+.+..+++..+|+.- .++ .++.+.++.+++.+.+++.+++.+|+...
T Consensus 216 ~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i--~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~ 293 (364)
T PRK12462 216 ERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMALVLRWI--RDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAH 293 (364)
T ss_pred hhccccCCchhhHHHHHhcCCCCCCchHHHHHHHHHHHHHH--HHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCC
Confidence 654321 11122356777777777776531 134 68888999999999999999998654332
Q ss_pred -cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 385 -EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 385 -~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
...+-+-+.+++++. .-..+|.+.+.++ |+.
T Consensus 294 ~~~RS~mnv~f~~~~~-----------~l~~~f~~~a~~~-gl~ 325 (364)
T PRK12462 294 RAARSTMNVAFRFRQP-----------RLDTLFKEQSTEA-GFC 325 (364)
T ss_pred hhhcCcceEEEEcCCH-----------HHHHHHHHHHHHC-CCc
Confidence 234456677777542 1245666655444 553
|
|
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.6e-09 Score=98.77 Aligned_cols=268 Identities=15% Similarity=0.147 Sum_probs=168.1
Q ss_pred hcCCCeEEcCCCCCCCCC---hHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 92 QAGVSVIRLAAGEPDFDT---PVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~---p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
..|+.++|+-.|.-.... +|++.+++.+.+..- ...|.. .-..+|-+++++.+- -+-..++++++++
T Consensus 47 e~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~~-~pi~~~Ae~L~s~~P------~~l~~vfF~nsGs 119 (442)
T KOG1404|consen 47 EEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYLN-PPIHDLAEALVSKLP------GDLKVVFFVNSGS 119 (442)
T ss_pred CCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeeccccC-CcHHHHHHHHHHhCC------CCceEEEEecCCc
Confidence 356778888887743222 688999888877532 234532 224567677766652 1335789999999
Q ss_pred HHHHHHHHHhcC-CC-CEEEEcCCCCCC-hHHHHHHcCCEEEEecCCCC--------------CCCCCC---------HH
Q 014172 166 QSILQAVLAVCS-PG-DEVIIPAPFWVS-YPEMARIADATPVILPTRIS--------------ENFLLD---------PK 219 (429)
Q Consensus 166 ~al~~~l~~l~~-~g-d~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~--------------~~~~~d---------~e 219 (429)
+|.+++++.... -| -.|+.-..+|.+ ....+-+.|......+...- .-|.=+ .+
T Consensus 120 EANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~ 199 (442)
T KOG1404|consen 120 EANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAK 199 (442)
T ss_pred hHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHH
Confidence 999988877532 12 245555666654 44444444443322221100 001001 13
Q ss_pred HHHhhcc---cCCc-EEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCce
Q 014172 220 VLESKLT---EKSR-LLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (429)
Q Consensus 220 ~l~~~l~---~~~~-~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (429)
++++.+. +++- +.+..+.+.-.|.+ +++-.+++..++|+++ |.+.|.||+...|...| .+..+.. .+.+
T Consensus 200 ~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~-Ggl~IaDEVqtGfGRtG----~~wgfe~-h~v~ 273 (442)
T KOG1404|consen 200 ELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKR-GGLFIADEVQTGFGRTG----HMWGFES-HGVV 273 (442)
T ss_pred HHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHc-CCEEEehhhhhcccccc----ccccccc-cCCC
Confidence 3444432 2333 34445556656755 4556899999999999 99999999999976555 2333322 3444
Q ss_pred EEEeccChhcccccceeeEEEcCHHHHHHHHHHh-hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~-~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (429)
--+-|++|.+| .|..+|.+++.+++.+.+.+.. ..++++.++.+.+++.+.|+-- .++ ++.+.-++.-.++.+
T Consensus 274 PDIvTmAKgiG-nG~Pl~AVvtt~EIa~v~~~~~~~fnTyggnP~a~avg~aVL~Vi--kee---~LqE~aa~vG~yl~~ 347 (442)
T KOG1404|consen 274 PDIVTMAKGIG-NGFPLGAVVTTPEIADVLNQKSSHFNTYGGNPVACAVGLAVLKVI--KEE---NLQENAAEVGSYLLE 347 (442)
T ss_pred ccHHHHHhhcc-CCCcceeeecCHHHHHHHHhccccccccCCCchhHHHHHHHHHHH--HHH---hHHHHHHHHHHHHHH
Confidence 45889999999 9999999999999999998776 5667778888888888888751 133 333444445556666
Q ss_pred HhccC
Q 014172 374 SFGEL 378 (429)
Q Consensus 374 ~L~~l 378 (429)
.|.++
T Consensus 348 ~l~~l 352 (442)
T KOG1404|consen 348 KLAAL 352 (442)
T ss_pred HHHHH
Confidence 66554
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.8e-08 Score=101.10 Aligned_cols=277 Identities=13% Similarity=0.103 Sum_probs=170.1
Q ss_pred ChHHHHHH-HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCC---------
Q 014172 109 TPVLIAEA-GINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP--------- 178 (429)
Q Consensus 109 ~p~~v~~a-~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~--------- 178 (429)
.++.++.. +...+......|..+++...+.+.+.+++.+..|.+ ...=.+|+|||++...++.+..+.
T Consensus 95 ~~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~--~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~ 172 (608)
T TIGR03811 95 LMPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYK--NGWGHIVADGSLANLEGLWYARNIKSLPFAMKE 172 (608)
T ss_pred CHHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCC--CCCeEEeCChHHHHHHHHHHHHHhhhccchhhh
Confidence 34444444 344444444455556678899999999999999964 334457888888777655543210
Q ss_pred -------------------------------------------C------CEEEEcCCCCCChHHHHHHcCC---EEEEe
Q 014172 179 -------------------------------------------G------DEVIIPAPFWVSYPEMARIADA---TPVIL 206 (429)
Q Consensus 179 -------------------------------------------g------d~Vlv~~p~y~~~~~~~~~~g~---~~~~v 206 (429)
| -.|+++.-.|.+...++..+|+ .++.|
T Consensus 173 ~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~V 252 (608)
T TIGR03811 173 VKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPV 252 (608)
T ss_pred ccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEe
Confidence 0 0578888889999999999999 58899
Q ss_pred cCCCCCCCCCCHHHHHhhccc----C--CcEEEEcCCCCCccCCCCHHHHHHHHHHH---HhCCCe--EEEEccCCcccc
Q 014172 207 PTRISENFLLDPKVLESKLTE----K--SRLLILCSPSNPTGSVYPKNLLDEIARIV---AKHPRL--LVLSDEIYEHII 275 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~~----~--~~~i~l~~p~NPtG~~~~~~~l~~I~~~a---~~~~~i--~vi~Deay~~~~ 275 (429)
|++ +++.+|++.|++.|.+ + +-+|+-+...-.+|.+=| +++|+++| +++ ++ |+.+|.||+++.
T Consensus 253 pvD--~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDp---l~eI~~l~~~~~~~-gl~~~lHVDAAyGG~~ 326 (608)
T TIGR03811 253 PVD--SNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDG---IDKIVALRNKLMKE-GIYFYLHVDAAYGGYG 326 (608)
T ss_pred ecC--CCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCC---HHHHHHHHHHHHHc-CCceeEeeeccccchh
Confidence 986 4567999999998853 2 234455667778999999 55555555 788 87 699999999852
Q ss_pred ---cCCCC--CCcc-------------------------ccCCCCCCceEEEeccChhcccccceeeEEEcCH-HHHHHH
Q 014172 276 ---YAPAT--HTSF-------------------------ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC 324 (429)
Q Consensus 276 ---~~~~~--~~~~-------------------------~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~~~~l 324 (429)
+-+.. ..++ ..+.+.....=+...++|.+. .....|.++..+ .+.+.+
T Consensus 327 ~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~-~Py~~G~ll~Rd~~~~~~~ 405 (608)
T TIGR03811 327 RAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGY-IPYSAGGIVIQDIRMRDVI 405 (608)
T ss_pred hhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccc-cCCCeEEEEEeCHHHHHHH
Confidence 11100 0000 001111222335667899876 556788777654 443333
Q ss_pred HHHhhc--------------ccCCCchHHHHHHH--HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCce
Q 014172 325 NKIQSQ--------------FTSGASSISQKAGV--AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL------EGVK 382 (429)
Q Consensus 325 ~~~~~~--------------~~~~~~~~~q~aa~--~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l------~g~~ 382 (429)
.....+ ++...+.++..++. ..++.-..+.+.+.++.++..+.++++.+.|.+. +.++
T Consensus 406 ~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~e 485 (608)
T TIGR03811 406 SYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIE 485 (608)
T ss_pred hcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCee
Confidence 211100 01122323322222 2222210145677888888888888898888773 3455
Q ss_pred e---ecCCceEEEEE
Q 014172 383 M---SEPQGAFYLFI 394 (429)
Q Consensus 383 ~---~~p~~~~~~~~ 394 (429)
+ .+|+-++.+|.
T Consensus 486 l~~~~~pdlniV~Fr 500 (608)
T TIGR03811 486 VHPLTKPDFNMVDYV 500 (608)
T ss_pred EEecCCCCcceEEEE
Confidence 4 46777775544
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1e-08 Score=94.86 Aligned_cols=302 Identities=14% Similarity=0.145 Sum_probs=184.6
Q ss_pred cCCCeEEcCCCCCCC---CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDF---DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~---~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+||-.+.... ..+|.+.+++.+..+. ...+...-+..+--+.++++.+.+| -+-|+.++.+.|+.+
T Consensus 57 eGk~ylDflsaysaVnqGhchpki~~aLqeq~~k--LtlssrafYnd~~~~f~~~vt~lf~----~~kvlpmnTGaEa~E 130 (427)
T KOG1402|consen 57 EGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADK--LTLSSRAFYNDVLGEFAEYVTKLFG----YDKVLPMNTGAEAVE 130 (427)
T ss_pred CccchhhhhhhhhhcccCCCCHHHHHHHHHHHhH--hhhhhHHHhhhhHHHHHHHHHHhcC----cceeeecccchhHHH
Confidence 355566665555332 2378899998887653 1111112234455566666666655 356888888899998
Q ss_pred HHHHHhc------C--C-CC-EEEEcCCCCCChHHH----------HHHcCC----EEEEecCCCCCCCCCCHHHHHhhc
Q 014172 170 QAVLAVC------S--P-GD-EVIIPAPFWVSYPEM----------ARIADA----TPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 170 ~~l~~l~------~--~-gd-~Vlv~~p~y~~~~~~----------~~~~g~----~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
.++.... + | .. .|+....+|.+-... .+.+|- .+..+|. + |.++|+.++
T Consensus 131 ta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y---~----d~eale~~l 203 (427)
T KOG1402|consen 131 TACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPY---G----DAEALEVAL 203 (427)
T ss_pred HHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeecc---C----CHHHHHHHh
Confidence 8877652 1 3 22 344444444432111 111111 1222332 1 789999999
Q ss_pred ccC-CcEEEEcCCCCCccCCCCHH-HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 226 TEK-SRLLILCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 226 ~~~-~~~i~l~~p~NPtG~~~~~~-~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
.++ ..++++.--+-..|++.|+. .++++.++|.+| |+++|.||++.++...|.. ........ ...+++ |.|.
T Consensus 204 ~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtky-nvl~I~DEvQTGl~RTGk~--la~d~env-~PDivi--lgKa 277 (427)
T KOG1402|consen 204 KSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKY-NVLLIADEVQTGLARTGKL--LACDYENV-RPDIVI--LGKA 277 (427)
T ss_pred cCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhh-cEEEEehhhhhcccccCcE--EEeehhhc-CCCeEE--Eecc
Confidence 764 44444444478889777665 699999999999 9999999999988765531 11111111 112444 7899
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC----
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---- 379 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~---- 379 (429)
++-.=..+..++++++++..+.......+++-++++.++++++|+- .. -+++.++-.+.-+.++++|.+++
T Consensus 278 lSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vaiAalev---i~--eekL~era~~lG~~l~~~L~~l~~~~p 352 (427)
T KOG1402|consen 278 LSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAIAALEV---IV--EEKLVERAAKLGEILRDQLNKLQKKFP 352 (427)
T ss_pred ccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9723367888899999998887776677788899999999999974 12 23455666666777788877763
Q ss_pred C-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 380 G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 380 g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
+ ++.++..| ++.-+.+... . ....++.++|..|.++ |++
T Consensus 353 ~~v~~VRGrG-l~~ai~i~~~---~----~~~~~aw~~cl~lk~~-g~L 392 (427)
T KOG1402|consen 353 HVVKEVRGRG-LLNAIVINPS---K----TSGQDAWDVCLALKEN-GLL 392 (427)
T ss_pred chhheeeccc-eEEEEEeccc---c----ccchhHHHHHHccccc-ccc
Confidence 3 24444444 5555554321 0 0113678888876554 654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-08 Score=103.04 Aligned_cols=298 Identities=11% Similarity=0.146 Sum_probs=180.4
Q ss_pred HHHHHHHHHHhcCCCe-EEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCC-----CCCHHHHHHHHHHHHhhcCCCCC
Q 014172 82 AITDQATALAQAGVSV-IRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPN-----AGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~~-i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~-----~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
++.+..+++.+..... .-++.|.=+.-.|+.+.+.+.+.- + ++.|+|- +|..+..-.+...+.+..| .+
T Consensus 50 e~~~~~~~la~~N~~~~~fig~G~y~~~~p~~i~r~v~~~p--~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLtG--m~ 125 (939)
T TIGR00461 50 EALAHLKKIASKNHKFKSYIGMGYYGTILPPVIQRNLLENP--GWYTAYTPYQPEISQGRLEALLNFQTVVSDLTG--LP 125 (939)
T ss_pred HHHHHHHHHHhcCCCccccCCCCcCCCcCChHHHHHHHhCc--hhhhcCCCCChhhhhHHHHHHHHHHHHHHHHHC--CC
Confidence 4444555555444332 223455544445777775555421 2 3455553 4655444444444555556 35
Q ss_pred CCcEEEecChHHHHHHHHHHhc-C--CCCEEEEcCCCCCChHHHHH----HcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 155 PDQILVSNGAKQSILQAVLAVC-S--PGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l~-~--~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
..|.-+..+++++.++++++.. . ++++|++++-.|+.+...++ ..|.+++.++ ++++++.+
T Consensus 126 ~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~~~~----------~~~l~~~~-- 193 (939)
T TIGR00461 126 VANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVIVVD----------CSDIKKAV-- 193 (939)
T ss_pred hhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEEEEc----------HHHHhhcC--
Confidence 5678888888888887776642 2 34899999999998885554 7888988874 33455555
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc-
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM- 306 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~- 306 (429)
++.++++.+|+. .|.+-+ +++|+++++++ +.+++++.--..+ .+..-++.++-+|++++ +|.||+
T Consensus 194 ~~~~v~~q~Pn~-~G~ied---~~~i~~~~h~~-gal~~~~ad~~al--------~ll~~Pge~GaDi~vg~-~q~fg~p 259 (939)
T TIGR00461 194 DVFGCLLQYPAT-DGSILD---YKQLIDALHSH-KSLVSVAADLMAL--------TLLTPPGHYGADIVLGS-SQRFGVP 259 (939)
T ss_pred CEEEEEEECCCC-CeEEec---HHHHHHHHHHc-CCEEEEEechHHh--------CCcCCHHHcCCcEEeeC-CCccCCC
Confidence 466777888876 899876 99999999999 8888874322211 11112233455566543 344442
Q ss_pred ---ccceeeEEEcCHHHHHHH----------------------------HHHhhcccCCCchHHHHHHHH--HHhcCCCC
Q 014172 307 ---TGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQKAGVA--ALGLGYAG 353 (429)
Q Consensus 307 ---~G~R~G~v~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q~aa~~--~l~~~~~~ 353 (429)
.|.-.|++.+.+++.+.+ ++.+...+.|.+....+.... +.-. +
T Consensus 260 ~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~---G 336 (939)
T TIGR00461 260 MGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSYCVYH---G 336 (939)
T ss_pred CCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHHHHHH---C
Confidence 356678887777665543 111222233333333221112 2223 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEE--EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.++++.++...+..++.+.|++. |+++..+ .||=. ++++. .+..++.++|+++ ||.+
T Consensus 337 ~~GL~~iA~~~~~~a~~l~~~L~~~-G~~~~~~--~fF~~~~v~~~~------------~~~~~i~~~~~~~-gi~l 397 (939)
T TIGR00461 337 PKGLKNIARRIHSLTSILANGLEND-PHELINK--TWFDTLTVKVGN------------GISSELLKAAEEF-NINL 397 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCC--CccceEEEEeCC------------CCHHHHHHHHHHC-CCee
Confidence 6788899888899999999999995 9887654 45533 34431 2578899988776 7754
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-08 Score=94.78 Aligned_cols=308 Identities=15% Similarity=0.157 Sum_probs=190.8
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.|.+-.++..|...+. +++..+-+.+.+.. +...-.-.++..++.+++-.++...++-+ ....=..|.|+++++.++
T Consensus 77 d~~~~~~~vS~~v~~~-~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~-~~~~g~~t~G~Ses~l~~ 154 (491)
T KOG1383|consen 77 DGNPRLGLASGVVYWG-EPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAP-SDSCGCGTVGGSESGLAA 154 (491)
T ss_pred CCCcccCeeeEEEecC-CcchhhHHHHHHhhcCccCccccchhHHHHHHHHHHHHHHhcCC-ccccCccccccchHHHHH
Confidence 3444455555555444 44555555555543 22222223577888888888888888754 222336788999996655
Q ss_pred HHHh----cC-CC---CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccC
Q 014172 172 VLAV----CS-PG---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243 (429)
Q Consensus 172 l~~l----~~-~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~ 243 (429)
.... .. .| .+++++.-.+..+...++.++.++..||+++ +++.+|+..+.+.+++++.+++..-|+-|+|.
T Consensus 155 ~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~-~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~ 233 (491)
T KOG1383|consen 155 KKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEVELREVPLDE-GDYRVDPGKVVRMIDENTIMLVGSLPNFPTGE 233 (491)
T ss_pred HHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEEEEEeeeccc-cceEecHHHHHHHhccceEEEEEEcCCCCccc
Confidence 5443 11 23 4577777788888889999999999999986 67999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHh-CCCeEEEEccCCcccccC-CCCCCccccCCCCCCceEEEe-ccChhcccccceeeEEEcC-HH
Q 014172 244 VYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYA-PATHTSFASLPGMWERTLTVN-GFSKAFAMTGWRLGYIAGP-KH 319 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~-~~~i~vi~Deay~~~~~~-~~~~~~~~~~~~~~~~~i~~~-S~SK~~~~~G~R~G~v~~~-~~ 319 (429)
.=+ +++|.++..+ + ++.+.+|.+-+.|+-. +... ...++-....|-.+. +-+| ||+.--.+||++-. ++
T Consensus 234 ~e~---ve~l~~l~~e~w-~ipiHvDa~~GgFi~p~~~~~--~~~fdFr~p~V~Sisa~~HK-YGl~~~G~~~vl~r~k~ 306 (491)
T KOG1383|consen 234 IED---VEKLADLLLEIW-DIPIHVDACLGGFINPAGYLN--EEEFDFRVPGVTSISADGHK-YGLAPAGSSWVLYRNKE 306 (491)
T ss_pred hhh---HHHHHHHHHHHh-CCceeecccCccccccccccC--ccccccCCCCceeEeeccce-eeeeecCcEEEEEcccc
Confidence 866 8899999888 9 9999999999887642 1111 111111111222222 2345 55554558998753 22
Q ss_pred HHH-H-------HHHHhhcccCCCchHHHHHHH---HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCC
Q 014172 320 FVA-A-------CNKIQSQFTSGASSISQKAGV---AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQ 387 (429)
Q Consensus 320 ~~~-~-------l~~~~~~~~~~~~~~~q~aa~---~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~ 387 (429)
+.. + +.......+...|..+...+. +.+.. +++...+..+...+....+.+.+++++++.+. +|.
T Consensus 307 ~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~l---G~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~ 383 (491)
T KOG1383|consen 307 LLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSL---GEEGYRENTQNIVETARKLREGIENIKGIKIVGKPL 383 (491)
T ss_pred cccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCc
Confidence 221 1 111111222222222222221 12233 45556666677777888899999998888776 344
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
-++ +..+-.. .+-.++.+.|.+. |..
T Consensus 384 vs~-~~~~s~~------------~~i~elsd~l~~~-GW~ 409 (491)
T KOG1383|consen 384 VSF-ILFGSND------------VNIFELSDLLRKK-GWI 409 (491)
T ss_pred EEE-EEccCCc------------cchhhhhHHHHhc-CcC
Confidence 444 2222221 2566777766554 543
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-10 Score=106.52 Aligned_cols=266 Identities=20% Similarity=0.179 Sum_probs=58.0
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHH-HHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELR-SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr-~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
+.-+.|..+ .++++.+++.+..... ...|.-..|-..-| ..+.+.+.... ..+..+++++...++.+++.++
T Consensus 9 lHTnLGRs~--l~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~lt----gAeaA~VvNnnaAAv~L~l~~l 82 (367)
T PF03841_consen 9 LHTNLGRSP--LSEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELT----GAEAALVVNNNAAAVLLALNTL 82 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccc--ccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccc
Confidence 344455544 3567777776654321 12343222222111 11222332222 3467788888888898888888
Q ss_pred cCCCCEEEEcCCCCC------ChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHH-
Q 014172 176 CSPGDEVIIPAPFWV------SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN- 248 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~------~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~- 248 (429)
+ +|.+|++..---. -..++++..|++++.|-.... -.+++++++|+++|.+++-.+++|-.-.-++.+
T Consensus 83 a-~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN~----t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~ 157 (367)
T PF03841_consen 83 A-KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTNR----THLSDYEKAITENTAALLKVHTSNFRIQGFTGEV 157 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c-cccccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccc
Confidence 6 5677777653222 256788899999999986422 368899999999999998888877532211111
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCcccc----cCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHH
Q 014172 249 LLDEIARIVAKHPRLLVLSDEIYEHII----YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (429)
Q Consensus 249 ~l~~I~~~a~~~~~i~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l 324 (429)
.++++++++++| ++++|+|..-+.+. |+-...+++..... .+..++++|-.|.+| |...|.+++.+++++.+
T Consensus 158 ~~~el~~la~~~-~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~-~GaDlV~fSGdKlLG--GPQaGiI~Gkk~lI~~l 233 (367)
T PF03841_consen 158 SLEELAELAKEH-GLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLA-AGADLVTFSGDKLLG--GPQAGIIVGKKELIEKL 233 (367)
T ss_dssp ---HHHHHHHHH-T--EEEE-TTHHHHHHHTT----------CCC-CT-SEEEEETTSSSS--S-S-EEEEEEHHHHHHH
T ss_pred cHHHHHHHHhhc-CCcEEEECCCCCCcCcccccCccccHHHHHhh-cCCCEEEEECCCcCC--CCCeEEEEeCHHHHHHH
Confidence 289999999999 99999998874332 22112344544433 466799999999986 77799999999999999
Q ss_pred HHHhhcccCCCchHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHHHHHHhccC
Q 014172 325 NKIQSQFTSGASSISQKAGVAALGLGYA---------GGEVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~l~~~~~---------~~~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
++..-....-..-....+..+.|..-.. ....+....+.++++.+.+.+.|...
T Consensus 234 k~~pl~RalrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~~ 296 (367)
T PF03841_consen 234 KKHPLGRALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKAA 296 (367)
T ss_dssp HHHHHTTT-B--HHHHHHHHHHHHH--------------------------------------
T ss_pred hhCCCcceEeeCHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence 8765444445667777777666654110 01123444566677777777777764
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.00 E-value=2e-08 Score=98.91 Aligned_cols=272 Identities=18% Similarity=0.224 Sum_probs=150.7
Q ss_pred HHHHHHHHHHhcCCC-eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-----CCCCHHHHHHHHHHHHhhcCCCCCC
Q 014172 82 AITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLSYTP 155 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~-~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~ 155 (429)
++.+...++.+.... .--++.|.-+.-.|+.+.+.+...- +-.+.|+| ++|..+..-.....+.+..|.+ .
T Consensus 51 e~~r~~~~la~kN~~~~~fiG~G~y~~~~P~~i~~~i~~~~-ef~TaYtPYQpEisQG~Lq~lfe~Qs~i~eLTGmd--v 127 (429)
T PF02347_consen 51 ELLRHLERLASKNKSYTSFIGAGSYTHYVPAVIDRNILSRP-EFYTAYTPYQPEISQGRLQALFEYQSMICELTGMD--V 127 (429)
T ss_dssp HHHHHHHHHHTTS--TTS---CTTT-----HHHHH-HHCCH-HCCCS-STTSGGGBHHHHHHHHHHHHHHHHHHTSS--E
T ss_pred HHHHHHHHHHhcCCCCCccccccccCceeChhhcCccccCh-hhhccCCCCCcHHHHHHHHHHHHHHHHHHHhhCCC--c
Confidence 444455555544332 1123344433334555555233211 12356666 4566665556666666666743 2
Q ss_pred CcEEEecChHHHHHHHHHHh---cCCCCEEEEcCCCCCChHHHHH----HcCCEEEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 156 DQILVSNGAKQSILQAVLAV---CSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 156 ~~i~~t~G~~~al~~~l~~l---~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
-|.-+-.|++..-+.++++. -+..++|+++.-.|+.+...++ ..|.+++.++.+..+ ..| .++
T Consensus 128 aNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv~~~~~~~~--~~d--------~~~ 197 (429)
T PF02347_consen 128 ANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIVEVPLDEDG--TTD--------DDD 197 (429)
T ss_dssp E-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHHHHHHHCCHCCEEEEEE-BBTTC--SB---------STT
T ss_pred cCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEEEecccccC--Ccc--------ccC
Confidence 34556667777776665554 2334699999999999987544 579999999986433 233 567
Q ss_pred CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc---
Q 014172 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA--- 305 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~--- 305 (429)
+.+|++.+||. .|.+-+ +++|.++++++ +.+++. .+- .+... ...-++.++-+|++++ +|.||
T Consensus 198 ~a~v~vq~Pn~-~G~~ed---~~~i~~~~h~~-gal~~~-~ad-~~aL~------~l~~Pge~GADI~vg~-~Q~fg~p~ 263 (429)
T PF02347_consen 198 TAAVMVQNPNT-FGVFED---IKEIADIAHAA-GALVIV-GAD-PNALG------GLKSPGEYGADIVVGE-HQTFGIPM 263 (429)
T ss_dssp EEEEEEESS-T-TSB--T---HHHHHHHHHHT-T-EEEE-CGG-CCGCC------TC--GGGGT-SEEEEC-CTTTT---
T ss_pred eEEEEeecCCC-CceEee---HHHHHHHHHHc-CCEEEE-ecC-HHHHh------CcCChhhcCccEEeeC-CCCCcccC
Confidence 88999999986 788877 99999999999 888775 221 11111 1122334566688776 67765
Q ss_pred -cccceeeEEEcCHHHHHHH----------------------------HHHhhcccCCCchHH--HHHHHHHHhcCCCCh
Q 014172 306 -MTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSIS--QKAGVAALGLGYAGG 354 (429)
Q Consensus 306 -~~G~R~G~v~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~--q~aa~~~l~~~~~~~ 354 (429)
..|.-+|++.+.+++++.+ ++.+...+.|.+... ..++..+... +.
T Consensus 264 ~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~---G~ 340 (429)
T PF02347_consen 264 GFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAAAIYLAYL---GP 340 (429)
T ss_dssp CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHHHHHHHHH---HH
T ss_pred CCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHHHHHHHHh---CH
Confidence 3567789998888766643 222223344444433 2333333334 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 355 EVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+.++++.+....+..++.+.|+++.++.+
T Consensus 341 ~GL~~iA~~~~~~A~yl~~~L~~~~~~~~ 369 (429)
T PF02347_consen 341 EGLREIAERIHLNAHYLAERLKKIYGLPF 369 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTBECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 88999999999999999999998634443
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-07 Score=86.39 Aligned_cols=184 Identities=17% Similarity=0.267 Sum_probs=123.4
Q ss_pred CCCCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC-CCCCChHHH--------
Q 014172 126 TRYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEM-------- 195 (429)
Q Consensus 126 ~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~-p~y~~~~~~-------- 195 (429)
+.|+. +-|...|.+-.|+-+ |.....-+.-+. ++|.+|..++..+++|||+.+.-. .-|....+.
T Consensus 58 tGYGydD~GRdtLe~vyA~vf----~aE~a~VRpq~i-sGTHAI~~aLfg~LRpgDell~i~G~PYDTLeevIG~rg~~~ 132 (416)
T COG4100 58 TGYGYDDLGRDTLERVYAQVF----GAEAALVRPQII-SGTHAIACALFGILRPGDELLYITGSPYDTLEEVIGLRGEGQ 132 (416)
T ss_pred CCCCccccchhHHHHHHHHHh----ccccceeeeeee-cchhHHHHHHHhccCCCCeEEEecCCcchhHHHHhccCCCCc
Confidence 44543 345555555555554 422111122232 568899999999999999977443 335555544
Q ss_pred --HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEc-CCCCCccCCCCHHHHHHHHHHHHh-CCCeEEEEccCC
Q 014172 196 --ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIY 271 (429)
Q Consensus 196 --~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~-~p~NPtG~~~~~~~l~~I~~~a~~-~~~i~vi~Deay 271 (429)
++-.|.+...+|+..++ .+|.+.+.+.+++++|+|.|. +-..----.++.+++++++++.++ +||+++++|.+|
T Consensus 133 gSL~dfgi~Y~~v~Lt~~g--kiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCY 210 (416)
T COG4100 133 GSLKDFGIKYKAVPLTADG--KIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCY 210 (416)
T ss_pred ccHHHhCcceeecccccCC--cccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 34567788888887544 599999999999999999872 221111123677789999998876 579999999999
Q ss_pred cccccCCCCCCccccCCCCCCceEEEeccChhcccccce--eeEEEcCHHHHHHHH
Q 014172 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR--LGYIAGPKHFVAACN 325 (429)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R--~G~v~~~~~~~~~l~ 325 (429)
++|+-. ..+.- -+..+..+|+-|.-| .|+- -||+.+..+++++..
T Consensus 211 GEFvE~--~EPt~------vGaDliAGSLIKNpG-GgiaktGGYiaGk~~~ve~~~ 257 (416)
T COG4100 211 GEFVEE--KEPTH------VGADLIAGSLIKNPG-GGIAKTGGYIAGKAELVEAAA 257 (416)
T ss_pred hhhhhc--cCccc------cchhhhccceeeCCC-CceeeccceeechHHHHHhhc
Confidence 997632 22211 244588999999876 4432 489999999988764
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.6e-07 Score=87.23 Aligned_cols=314 Identities=18% Similarity=0.190 Sum_probs=182.7
Q ss_pred HHHHHHHHHHhcC----CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC---CCCHHHHHHHHHHHHhhcCCCCC
Q 014172 82 AITDQATALAQAG----VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN---AGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 82 ~~~~~~~~~~~~g----~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~---~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
++.+-..++.+.+ ..+|.|++..--+.+--+..-+....+. ..+-|.|. +|+.++...+.+||.+.-|.
T Consensus 49 e~~Rh~~rLs~kn~avd~~m~PLGSCTMK~Np~~e~~~~~~p~f~-~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~--- 124 (496)
T COG1003 49 EMVRHYTRLSQKDLAVDRGMIPLGSCTMKLNPKAEMKPATWPEFA-NIHPFQPEEQVQGYLELIYELQEWLKEITGM--- 124 (496)
T ss_pred HHHHHHHHHHhcccccccCccCCcccccccCchhhcccccccchh-hcCCCCChHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 4455555555432 2456666665444332221111111111 13445443 68889999999999988773
Q ss_pred CCcEEEecC-hHHHHHH---HHHHh-cCCC----CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 155 PDQILVSNG-AKQSILQ---AVLAV-CSPG----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 155 ~~~i~~t~G-~~~al~~---~l~~l-~~~g----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
+.|.+.+. +.++-+. +++.. -..| +.||+|+..|..-...+.++|.+++.|+.+.++ .+|+++|++++
T Consensus 125 -DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G--~VDlddLk~k~ 201 (496)
T COG1003 125 -DAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMAGFKVVVVKCDENG--NVDLDDLRAKA 201 (496)
T ss_pred -ceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhcCceEEEEecCCCC--CccHHHHHHHh
Confidence 34544432 2222222 33333 2333 689999999999999999999999999998554 49999999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
.+++.++.|++||- .|.. ++.+++|+++.+++ |-.|..|.+--.-..+-.. +++.+-.|+=.-++|+|+
T Consensus 202 ~~~~AalMiTnPsT-~GvF--E~~I~ei~~ivH~~-Gg~vY~DGANlNA~vG~~r-------PGd~G~DV~HlNLHKTF~ 270 (496)
T COG1003 202 EDNLAALMITNPST-LGVF--EEDIREICEIVHEA-GGQVYYDGANLNAIVGLAR-------PGDMGFDVVHLNLHKTFC 270 (496)
T ss_pred ccceeEEEeccCcc-cccc--hhhHHHHHHHHHHc-CCEEEecCcchhhhhcccc-------ccccccceEEeecccccc
Confidence 99999999999974 3443 66799999999999 8999999875432221111 222333455556788874
Q ss_pred c----ccceeeEEEcCHHHHHHHHH----H--hh-------c-------ccCCCchHHHHHHHHHH-hcCCCChHHHHHH
Q 014172 306 M----TGWRLGYIAGPKHFVAACNK----I--QS-------Q-------FTSGASSISQKAGVAAL-GLGYAGGEVVSKM 360 (429)
Q Consensus 306 ~----~G~R~G~v~~~~~~~~~l~~----~--~~-------~-------~~~~~~~~~q~aa~~~l-~~~~~~~~~~~~~ 360 (429)
. .|...|=+.+..+++..+-. . .. . ..++ +......+..++ .. +.+.+++.
T Consensus 271 iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~G-s~~il~~a~~YI~~m---G~~GL~~a 346 (496)
T COG1003 271 IPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYG-SASILPIAWAYIRMM---GADGLKQA 346 (496)
T ss_pred cCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccC-cchHHHHHHHHHHHH---hHHHHHHH
Confidence 3 45556655554444332211 0 00 0 0011 111122222222 22 35667777
Q ss_pred HHHHHHHHHHHHHHhccCCCcee-ecCC--ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 361 VKAFRERRDFLVKSFGELEGVKM-SEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 361 ~~~~~~~r~~l~~~L~~l~g~~~-~~p~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
.+.---+.+++.++|+.. +++ +.+. -..=+.++..... . +......+++++|++. |+
T Consensus 347 se~AvLNANYia~rL~~~--y~~~y~~~~~~~HE~ild~r~l~--~----~~Gv~~~DvAKrLlD~-Gf 406 (496)
T COG1003 347 SEVAVLNANYIARRLKGY--YPVPYTGENRVAHECILDARPLK--K----ETGVRALDVAKRLLDY-GF 406 (496)
T ss_pred HHHHHHhHHHHHHHhhhc--CccccCCCCcceeEEEeechHhH--h----hcCCcHHHHHHHHHhc-CC
Confidence 666677889999999862 222 1222 1221233433110 0 1114789999999986 64
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-06 Score=83.56 Aligned_cols=281 Identities=16% Similarity=0.197 Sum_probs=174.0
Q ss_pred HHHHHHHHHhcCCCeE-EcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCH----HHHHHHHHHHHhhcCCC
Q 014172 83 ITDQATALAQAGVSVI-RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTL----ELRSAICHKLKEENGLS 152 (429)
Q Consensus 83 ~~~~~~~~~~~g~~~i-~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~----~lr~~ia~~l~~~~g~~ 152 (429)
.....+++........ -++.|.=+.-+|+.+.+.+.+.- .-++.|+|- +|.. ++...++++ .|.
T Consensus 62 ~l~~l~~ia~kN~~~~sfiG~GyY~~~~P~vI~rnile~p-ewyTaYTPYQpEISQGrLqaLfefQtlv~dL----TGm- 135 (450)
T COG0403 62 ALAELKEIASKNKVFTSFIGAGYYDTYTPPVILRNILENP-EWYTAYTPYQPEISQGRLEALFEFQTLVADL----TGL- 135 (450)
T ss_pred HHHHHHHHHhcCchhhhhccCcccCCcCcHHHHHHhhcCc-cccccCCCCchhhhhHHHHHHHHHHHHHHHH----hCC-
Confidence 3344445444444222 24555544445777775554421 113556663 4443 344455555 454
Q ss_pred CCCCcEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCCCChHHHHHH----cCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 153 YTPDQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 153 ~~~~~i~~t~G~~~al~~~l~~l~---~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
+-.|.-+--++|.+-+.++++.. .+..+++++.-.|+.+...++. .|.+++.++.+ |.+.+++.-
T Consensus 136 -~VANASm~DeaTAaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~-------d~~~l~~~~ 207 (450)
T COG0403 136 -DVANASMLDEATAAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDAD-------DLDDLESAD 207 (450)
T ss_pred -CcccchhhhhHHHHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccc-------hhhhhhhcc
Confidence 34466667778877776666652 2358999999999999887664 56777777753 778888873
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEecc---Ch
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF---SK 302 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~---SK 302 (429)
...+.++++.+|+. .|.. .+++++|.+.++++ +.++++ +.+ .-.-.+..-++.++-.|++++- .=
T Consensus 208 ~~~~~gv~vQyP~~-~G~~--~~d~~~l~~~~h~~-~al~~v---~aD-----plaL~LL~pPGe~GADIvvG~~QrfGv 275 (450)
T COG0403 208 DGDVFGVLVQYPNT-FGIV--EEDLRALIEAAHSA-GALVIV---AAD-----PLALGLLKPPGEFGADIVVGSAQRFGV 275 (450)
T ss_pred ccCeEEEEEecCCC-CCcc--chhHHHHHHHHhhc-CCEEEE---Eec-----hhHhhccCCccccCCceEEecCcccCC
Confidence 33678888888874 6622 23499999999999 766663 111 1112333445566777888874 44
Q ss_pred hcccccceeeEEEcCHHHHHH----------------------------HHHHhhcccCCCchHHHHHH--HHHHhcCCC
Q 014172 303 AFAMTGWRLGYIAGPKHFVAA----------------------------CNKIQSQFTSGASSISQKAG--VAALGLGYA 352 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~----------------------------l~~~~~~~~~~~~~~~q~aa--~~~l~~~~~ 352 (429)
-+|..|..+||..+.+++.+. +++-+...+.|++..-.+.+ ..+.-.
T Consensus 276 PmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~~~h--- 352 (450)
T COG0403 276 PMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYAVYH--- 352 (450)
T ss_pred CcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHh---
Confidence 556678889999888776553 23333444555554333222 222223
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCC-CceeecCCceEEEEE
Q 014172 353 GGEVVSKMVKAFRERRDFLVKSFGELE-GVKMSEPQGAFYLFI 394 (429)
Q Consensus 353 ~~~~~~~~~~~~~~~r~~l~~~L~~l~-g~~~~~p~~~~~~~~ 394 (429)
+.+.++++..+..+...++.++|++.. |+++... .||--+
T Consensus 353 Gp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~--~fFdt~ 393 (450)
T COG0403 353 GPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD--HFFDTF 393 (450)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc--cceeeE
Confidence 578899999999999999999999752 5766533 565433
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-06 Score=81.49 Aligned_cols=301 Identities=17% Similarity=0.133 Sum_probs=172.7
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCC------CC-CCCCCCCHHHHHHHHHHHHhhcCCCCCCC--cEEEecChHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGF------TR-YTPNAGTLELRSAICHKLKEENGLSYTPD--QILVSNGAKQS 167 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~------~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~--~i~~t~G~~~a 167 (429)
-|.|=..++. +...+.+++-..+.+.+ .+ |+.+.-+.++.....++--+.|+.+-+.+ ||-.-+|+ .+
T Consensus 42 gieLIaSENF--ts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGS-PA 118 (477)
T KOG2467|consen 42 GIELIASENF--TSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGS-PA 118 (477)
T ss_pred ceeEeecccc--hHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCC-ch
Confidence 4666555554 45667777766665432 12 33322223333333333334567544445 44444454 45
Q ss_pred HHHHHHHhcCCCCEEEEcC-C--CCCChHHH--HHHcCCEEEE-----ecCCCCCCCCCCHHHHHhhccc-CCcEEEEcC
Q 014172 168 ILQAVLAVCSPGDEVIIPA-P--FWVSYPEM--ARIADATPVI-----LPTRISENFLLDPKVLESKLTE-KSRLLILCS 236 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~-p--~y~~~~~~--~~~~g~~~~~-----v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~ 236 (429)
.+.+..+++.|+|+|.=.+ | .|-++-.. .+...+.-++ +.+++ ..+.+|.|.|++.... ++|+|+- .
T Consensus 119 NfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~-~TG~IDYD~Le~~A~~frPk~iia-G 196 (477)
T KOG2467|consen 119 NFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDP-STGYIDYDKLEKTATLFRPKLIIA-G 196 (477)
T ss_pred hhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCC-CCCceehHHHHHHHHhcCCcEEEe-c
Confidence 6668999999999988433 2 33222111 1222222222 23444 3456899999986544 7787763 1
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~ 315 (429)
.+ -.-..++ ..++-++|.+. +.+++.|-++.- ++-.+..+.++.. ..|+..+-+|++ .|.|.|.+.
T Consensus 197 ~S-aY~R~~D---YaR~R~Iad~~-gA~Lm~DMAHISgLVAA~vipsPFey------~DiVTTTTHKsL--RGPRg~mIF 263 (477)
T KOG2467|consen 197 TS-AYSRLID---YARFRKIADKV-GAYLMADMAHISGLVAAGVIPSPFEY------CDIVTTTTHKSL--RGPRGAMIF 263 (477)
T ss_pred cc-cchhhcc---HHHHHHHHHhc-CceeehhhhhHHHHHhcccCCCcccc------cceeeccccccc--cCCcceeEE
Confidence 11 1223344 67777888888 999999999864 3333333333322 238889999997 799999887
Q ss_pred cCHH---------------HHHHHHHHh-hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 316 GPKH---------------FVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 316 ~~~~---------------~~~~l~~~~-~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
..+- +-+.+.... .....+|......+.+.+|... ....+....++..++.+.+.++|.+.
T Consensus 264 yRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa--~tpefk~Yq~qV~~Nakala~~l~~~- 340 (477)
T KOG2467|consen 264 YRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQA--MTPEFKEYQKQVLKNAKALASALISR- 340 (477)
T ss_pred EeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 5321 112222211 1223345555555566666643 23456778888888999999999988
Q ss_pred Cceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 380 GVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 380 g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
|.+++. ..-+..+.+++... + -...-+++.++..+|.++
T Consensus 341 Gy~lvtgGTDnHlvLvDLr~~-G----------~dGarvE~vle~~~I~~N 380 (477)
T KOG2467|consen 341 GYKLVTGGTDNHLVLVDLRPK-G----------VDGARVEKVLELCHIALN 380 (477)
T ss_pred CceEecCCccceEEEEecccc-C----------CchHHHHHHHHHhhhhhc
Confidence 888763 34456678888653 1 234566677777666553
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.2e-07 Score=81.79 Aligned_cols=299 Identities=13% Similarity=0.111 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC--CCCEEEEc
Q 014172 110 PVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--PGDEVIIP 185 (429)
Q Consensus 110 p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--~gd~Vlv~ 185 (429)
+|++.++....+..- ..++-. .+|.+-...... .. ..-+-++++++++++..++++...+ ...-|++-
T Consensus 63 hp~VV~A~~kQmat~~tN~RFlh----d~lv~cA~~l~s-tl---PeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItl 134 (452)
T KOG1403|consen 63 HPEVVRAGAKQMATISTNNRFLH----DELVQCARTLTS-TL---PELSVCFFVNSGSEANDLALRLARNFTKHQDVITL 134 (452)
T ss_pred CHHHHHHHHHHHhHhcccchhhH----HHHHHHHHHHhh-cC---CCceEEEEecCCchhhHHHHHHHHhhcccCceEEE
Confidence 678888887766531 222211 233332222222 11 1235678999999999999887532 22345556
Q ss_pred CCCCCChHHH-HHHc------CC---EEEEe---cCCC------------C-CCCCCCHHHHHhhccc------CCcEEE
Q 014172 186 APFWVSYPEM-ARIA------DA---TPVIL---PTRI------------S-ENFLLDPKVLESKLTE------KSRLLI 233 (429)
Q Consensus 186 ~p~y~~~~~~-~~~~------g~---~~~~v---~~~~------------~-~~~~~d~e~l~~~l~~------~~~~i~ 233 (429)
+..|.++... .+.. |. ++.+| |+.. . +....-.+.+++.+++ +..+.+
T Consensus 135 dHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfi 214 (452)
T KOG1403|consen 135 DHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFI 214 (452)
T ss_pred echhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHH
Confidence 6666665432 2211 11 11111 2211 0 0001112344444432 222333
Q ss_pred EcCCCCCccCCCCHH-HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceee
Q 014172 234 LCSPSNPTGSVYPKN-LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG 312 (429)
Q Consensus 234 l~~p~NPtG~~~~~~-~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G 312 (429)
-.+-++-.|.++|+. ..+++++..+.+ +-+.|.||+.-+|..-|...+.+.-. +-+--+-++.|.+| .|..++
T Consensus 215 AEslQSCGGQiiPPagYFq~Va~~Vr~a-GGv~IaDEVQvGFGRvG~hyWafq~y----~fiPDIVtmgKpmG-NGhPVa 288 (452)
T KOG1403|consen 215 AESLQSCGGQIIPPAGYFQAVADAVRSA-GGVCIADEVQVGFGRVGSHYWAFQTY----NFIPDIVTMGKPMG-NGHPVA 288 (452)
T ss_pred HHHHHhcCCcccCchhHHHHHHHHHhcC-CCeEEeehhhhcccccchhhhhhhhh----ccccchheecccCC-CCCeee
Confidence 355577788888776 589999999999 77888899999875555544444322 22222566899999 999999
Q ss_pred EEEcCHHHHHHHHH--HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec--CCc
Q 014172 313 YIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQG 388 (429)
Q Consensus 313 ~v~~~~~~~~~l~~--~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~--p~~ 388 (429)
.+++.+++.+++.. +.-..+++.++.+.+++.+.++.- ..+.+.+..+..-+....+...++. ..++.. -..
T Consensus 289 ~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~--e~E~Lq~ha~~vG~~L~~lL~~~k~--kh~~IGDvRGv 364 (452)
T KOG1403|consen 289 AVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVC--EDENLQEHAQQVGEKLEVLLRRLKQ--KHECIGDVRGV 364 (452)
T ss_pred EEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhh--hccceeccccc
Confidence 99999999999875 233345667888888888887741 1233444444444444444444433 122221 233
Q ss_pred eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
|.|+=+++-.-.. ..-.....+.-+..+|.+.++|++|
T Consensus 365 GLFiGIdLVkD~~---tRtP~tk~A~~~v~rlke~y~VLls 402 (452)
T KOG1403|consen 365 GLFIGIDLVKDRK---TRTPDTKEAHWVVNRLKELYRVLLS 402 (452)
T ss_pred eEEEeeeeecccc---cCCCcHHHHHHHHHHHHHhhhEEEe
Confidence 5667677632100 0000011345667788888888875
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.1e-05 Score=82.27 Aligned_cols=299 Identities=13% Similarity=0.118 Sum_probs=172.2
Q ss_pred HHHHHHHHHHhcCCC-eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC-----CCCHHHHHHHHHHHHhhcCCCCCC
Q 014172 82 AITDQATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN-----AGTLELRSAICHKLKEENGLSYTP 155 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~-~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~-----~G~~~lr~~ia~~l~~~~g~~~~~ 155 (429)
++....+++..+.+. ..-++.|.=+.-+|..+.+.+.+.-. -++.|+|- +|..+..-.....+.+..|.++
T Consensus 65 e~~~~~~~~a~kN~~~~~fiG~G~y~~~~P~vi~~~i~~~~~-~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~v-- 141 (954)
T PRK12566 65 AALARLRGYAEQNQVWTSLIGMGYHGTVTPTVILRNVLENPG-WYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDL-- 141 (954)
T ss_pred HHHHHHHHHHhcCCCccccccccccCCcCcHHHHHHHHhCch-hhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchh--
Confidence 444555555444432 23455555444457767565554211 13556553 4554433333334444445433
Q ss_pred CcEEEecChHHHHHHHHHHhc---CCCCEEEEcCCCCCChHHHHH----HcCCEEEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 156 DQILVSNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 156 ~~i~~t~G~~~al~~~l~~l~---~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
.|.-+-.|+|.+-+.++++.. .+..+|++++-.|+.+...++ ..|.+++. +++++.+..+
T Consensus 142 aNASl~D~atA~aEA~~ma~~~~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~~-------------~~~~~~~~~~ 208 (954)
T PRK12566 142 ANASLLDEATAAAEAMALAKRVAKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELVV-------------DAVDNLAAHA 208 (954)
T ss_pred hhhhhccchhHHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEEE-------------cchhhcCCCC
Confidence 355555566655554443331 224689999999988876554 45666654 2233345556
Q ss_pred CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEe---ccChhcc
Q 014172 229 SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN---GFSKAFA 305 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~---S~SK~~~ 305 (429)
+.++++.+|+. .|.+-+ +++|.++++++ +.++| +.+.- + ...+..-++.++-+|+++ +|.=-+|
T Consensus 209 ~~~v~vq~P~~-~G~i~d---~~~i~~~~h~~-gal~~-~~~d~-l------aL~ll~~Pge~GADI~vG~~Q~fGvp~~ 275 (954)
T PRK12566 209 VFGALLQYPDT-HGEIRD---LRPLIDQLHGQ-QALAC-VAADL-L------SLLVLTPPGELGADVVLGSTQRFGVPMG 275 (954)
T ss_pred EEEEEEECCCC-ceEEcc---HHHHHHHHHHc-CCEEE-EEeCH-H------HHhCCCChhhcCCcEEeeCCCcCCCCCC
Confidence 77888889975 788865 99999999998 77765 22211 1 111222344566678777 4555566
Q ss_pred cccceeeEEEcCHHHHHHH----------------------------HHHhhcccCCCchHHHHHH--HHHHhcCCCChH
Q 014172 306 MTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSISQKAG--VAALGLGYAGGE 355 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~q~aa--~~~l~~~~~~~~ 355 (429)
..|.-.||+.+.+++.+.+ ++-+...+.|++..-.+.+ ..+.-. +.+
T Consensus 276 ~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~---Gp~ 352 (954)
T PRK12566 276 YGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAGFYAVYH---GPE 352 (954)
T ss_pred CCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHHHHHHHh---ChH
Confidence 6778899998888776643 2333334445444333222 222222 467
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 356 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.++++.++...+..++.+.|.+. |+++... .||=-+.+.-. ....++.++.+++ ||-
T Consensus 353 Gl~~ia~~~~~~a~~l~~~l~~~-g~~~~~~--~fF~~~~v~~~-----------~~~~~~~~~a~~~-~~n 409 (954)
T PRK12566 353 GLKRIAQRVHRLTAILAAGLEAK-GIKRLNR--HFFDTLTLEVG-----------GAQAAIIESAEAA-RIN 409 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCccccC--CccceEEEEcc-----------CCHHHHHHHHHHC-CCe
Confidence 88888888888999999999995 8886533 56644444210 1355666665554 553
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5e-05 Score=73.20 Aligned_cols=267 Identities=18% Similarity=0.208 Sum_probs=158.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-------CCC-----CEEE-EcCCCC
Q 014172 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-------SPG-----DEVI-IPAPFW 189 (429)
Q Consensus 123 ~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-------~~g-----d~Vl-v~~p~y 189 (429)
.+...|--.++..-..+.+-..+.+..|++...+.|+.-.|+...++.+..+-- ..| +.|+ +++-+|
T Consensus 128 tn~~TYEiAPvF~lmE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesH 207 (510)
T KOG0629|consen 128 TNMFTYEIAPVFVLMEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESH 207 (510)
T ss_pred CCCceEEecceEEeehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccch
Confidence 334456555666556666667777777876655666666667777765544421 112 3444 456789
Q ss_pred CChHHHHHHcC---CEEEEecCCCCCCCCCCHHHHHhhccc-CCc----EEE-EcCCCCCccCCCCHHHHHHHHHHHHhC
Q 014172 190 VSYPEMARIAD---ATPVILPTRISENFLLDPKVLESKLTE-KSR----LLI-LCSPSNPTGSVYPKNLLDEIARIVAKH 260 (429)
Q Consensus 190 ~~~~~~~~~~g---~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~----~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~ 260 (429)
.+...++..+| -.++.|+++.. +.+++++||+.|.. +.+ +++ .+...-..|+.=| +..|+++|++|
T Consensus 208 YSi~kaAa~lg~gtd~c~~v~t~e~--Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd---L~~iadiC~k~ 282 (510)
T KOG0629|consen 208 YSIKKAAAFLGLGTDHCIKVKTDER--GKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD---LNGIADICEKH 282 (510)
T ss_pred hhHHHHHHHhccCCceeEEeccccc--CccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc---HHHHHHHHHhc
Confidence 99999999999 57888888753 45999999998743 222 332 3444566788777 99999999999
Q ss_pred CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH-HHHHHHHHhhcccCCC---c
Q 014172 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKIQSQFTSGA---S 336 (429)
Q Consensus 261 ~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-~~~~l~~~~~~~~~~~---~ 336 (429)
++|+.+|.+|++...-...+... +.+...-.=+..+.+|.+| +.+.++..+...+ +...+.+....+-+.. -
T Consensus 283 -~lWmHvDAAwGGglLmS~k~R~k--l~Giera~SvtwnpHK~~g-aplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Y 358 (510)
T KOG0629|consen 283 -KLWMHVDAAWGGGLLMSRKHRHK--LTGIERANSVTWNPHKLMG-APLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFY 358 (510)
T ss_pred -CEEEEeecccccccccChhhHhh--ccCccccCceeecHHHhhc-CcchhhHHHHHHHHHHHhhcccchhhhhccCcee
Confidence 99999999998743322222221 1111111134567789998 7777777666543 4444433221110000 0
Q ss_pred hHHHHHHHHHHhcC-------------CCChHHHHHHHHHHHHHHHHHHHHhccCCCceee---cCCceEEEEEecCC
Q 014172 337 SISQKAGVAALGLG-------------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS---EPQGAFYLFIDFST 398 (429)
Q Consensus 337 ~~~q~aa~~~l~~~-------------~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~---~p~~~~~~~~~l~~ 398 (429)
..+-.+....+..+ ..+...+++..+++-+..+++.+.+++-+|...+ .|+...+++-.+|.
T Consensus 359 dvS~DTgdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~ 436 (510)
T KOG0629|consen 359 DVSYDTGDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPP 436 (510)
T ss_pred ecccccccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCch
Confidence 00011111111111 0123446778888889999999999997664432 35644444444444
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00026 Score=68.61 Aligned_cols=272 Identities=18% Similarity=0.164 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEecChHH-HHHHHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQ-SILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~-al~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 212 (429)
.|...++..+-+..|.+ +-..+++.+.+|. .+.+.+.++. ..++.|+.+.-.+.+...++..+|++++.|+...++
T Consensus 56 ~ltn~l~~d~~~~~G~~-~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl~~~vV~~~~~~ 134 (389)
T PF05889_consen 56 KLTNSLVLDALRLAGLR-SVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGLEPVVVENVLEG 134 (389)
T ss_dssp HHHHHHHHHHHHHTTHT-THCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT-EEEEE-EEEET
T ss_pred HHHHHHHHHHHHHcCCc-cccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCCeEEEeeccCCC
Confidence 34444554444556753 2356777776554 3334444443 457999999988888888999999999999964433
Q ss_pred C-CCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 213 N-FLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 213 ~-~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
+ ...|.+.+++.+++ +..+.++++++---|...+ ++++|+++|++| |+..|+-.||+--.. ..-..+.+-.
T Consensus 135 d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D--~i~~IakiC~~~-~IPhlvNnAYgvQ~~--~~~~~i~~a~ 209 (389)
T PF05889_consen 135 DELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPD--DIEEIAKICKEY-DIPHLVNNAYGVQSS--KCMHLIQQAW 209 (389)
T ss_dssp TEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB------HHHHHHHHHHH-T--EEEEGTTTTT-H--HHHHHHHHHH
T ss_pred CeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCc--cHHHHHHHHHHc-CCceEEccchhhhHH--HHHHHHHHHH
Confidence 3 33467888877753 4456667776544555533 599999999999 999999999974100 0000000000
Q ss_pred CCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
......+++.|..|.|= -+..-+.+.+ .+..+..+.+.-....+ ..+........+.. +............+.
T Consensus 210 ~~GRvda~vqS~dkNF~-VPvGgai~As~~~~~i~~vs~~YpGRas--~sp~ld~~itLl~L---G~~g~~~ll~~r~~~ 283 (389)
T PF05889_consen 210 RVGRVDAFVQSTDKNFM-VPVGGAIMASFDPSGILAVSKEYPGRAS--ASPSLDLFITLLSL---GCTGYGALLKERKAS 283 (389)
T ss_dssp HHSTCSEEEEEHHHHHC-EESSHEEEEESSHHHHHHHHHTSHSHBT--SHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred hcCCcceeeeecCCCEE-ecCCCcEEEecCHHHHHHHHHHhhhhhh--cccchHHHHHHHHH---hhhHHHHHHHHHHHH
Confidence 00122378999999994 4444444444 45677777654322222 23334445555554 233444455555555
Q ss_pred HHHHHHHhccCC---Cceee-cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 368 RDFLVKSFGELE---GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 368 r~~l~~~L~~l~---g~~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
..++.++|+++. +-.+. .|....-+.+.++....... .+...|...|..+ ||
T Consensus 284 f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~------k~~~~lgs~Lf~R-~V 339 (389)
T PF05889_consen 284 FPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQ------KDGTFLGSMLFKR-GV 339 (389)
T ss_dssp HHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCS------SHHHHHHHHHHHT-TE
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhcc------chhhhHHHHHHhC-Cc
Confidence 555555555431 32332 35555556667765321000 1346777777665 65
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00099 Score=73.30 Aligned_cols=232 Identities=12% Similarity=0.143 Sum_probs=146.0
Q ss_pred eEEcCCCCCCCCC-hHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 97 VIRLAAGEPDFDT-PVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 97 ~i~L~~g~~~~~~-p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.+||+..+-.... --.++..+...++.. ..-|.|+.|...+|..||.++...+++++++++|++.++-..++..+++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1082)
T PLN02672 389 SLDLSFEDESVADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRL 468 (1082)
T ss_pred hccccccccccchhhccHHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHh
Confidence 4555544422211 112556666666543 56788999999999999999999999999999999999999999777765
Q ss_pred h------cCCCCEEEEcCCCCCChHHHHHHcC--------CEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCC
Q 014172 175 V------CSPGDEVIIPAPFWVSYPEMARIAD--------ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSN 239 (429)
Q Consensus 175 l------~~~gd~Vlv~~p~y~~~~~~~~~~g--------~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~N 239 (429)
+ ++.+-+-.++. . |...+...| ..+..+.-.. ..+.+.+.++. ++++|+..-.+
T Consensus 469 ~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~- 537 (1082)
T PLN02672 469 FSPRLAIVDEHLTRWLPK-K---WLTSLAIENATSDSKSDDVITVIEAPR------QSDLVIELIKKLKPQVVVTGMAD- 537 (1082)
T ss_pred hChHHHhhhhhhhccCCH-H---HHhHhhhhcccccCccCCeEEEEeCCC------cchHHHHHHHhCCCeEEEEeccc-
Confidence 4 55554443332 2 222222222 2333332111 11233444433 66777643332
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccC-CcccccCCCCCCccccCC--CCCCceEEEeccChhcccccceeeEEEc
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEI-YEHIIYAPATHTSFASLP--GMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Dea-y~~~~~~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
+-..+....+.|.+.+++. |.+++.|.. |-++.-.+....-+..+. ....+..++..+-|.--.+.+-+.+++.
T Consensus 538 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (1082)
T PLN02672 538 --FEMRTSTAFEHLLNVTAEI-GARLFLDISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVIS 614 (1082)
T ss_pred --hhhhhHHHHHHHHHHHHhh-CcEEEEehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEec
Confidence 2233555689999999999 999999976 444443333222222221 2245556778888888789999999986
Q ss_pred -CHHHHHHHHHHhhcccCCCchHHHHH
Q 014172 317 -PKHFVAACNKIQSQFTSGASSISQKA 342 (429)
Q Consensus 317 -~~~~~~~l~~~~~~~~~~~~~~~q~a 342 (429)
++.+...+.+......+.++.++|..
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (1082)
T PLN02672 615 ENEAVLKALSKTGEVLEGRTAIISQFY 641 (1082)
T ss_pred CcHHHHHHHHHHHHhhccchHHHHHHH
Confidence 55677778776666666677777743
|
|
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0048 Score=59.01 Aligned_cols=291 Identities=9% Similarity=0.111 Sum_probs=155.6
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCC--CC-----C-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEec-ChHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTR--YT-----P-NAGTLELRSAICHKLKEENGLSYTPDQILVSN-GAKQS 167 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~--Y~-----~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~-G~~~a 167 (429)
..+|+.|-.- .|+++++.+.+.+.+ +.+ ++ . +.-..++.+...+.+.+.++++-+ -.|++.. |++..
T Consensus 6 ~~nFsaGPa~--lp~~vL~~a~~e~~~-~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~-Y~VlflqGGat~q 81 (365)
T COG1932 6 VYNFSAGPAA--LPPEVLQQAQKELLD-WNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDD-YKVLFLQGGATGQ 81 (365)
T ss_pred CCCCCCCccc--CCHHHHHHHHHHHhh-hccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCC-ceEEEEcCccHHH
Confidence 5677777644 356666666655433 111 11 0 111245556666777777786533 3565554 57888
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChH-HHHHHcCCEEEEecCC-CCC--CCCCCHHHHHhhcccCCcEEEEcCCCCCccC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYP-EMARIADATPVILPTR-ISE--NFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~-~~~~~~g~~~~~v~~~-~~~--~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~ 243 (429)
..++...|+.....=.+..-.|.... ..++..+-.+...... .+. +..++++... +.++..-|.+|.-.--+|+
T Consensus 82 f~~~p~nLl~~~~~~yv~~g~Ws~~a~~eA~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv 159 (365)
T COG1932 82 FAMAPMNLLGKRGTDYVDTGAWSEFAIKEAKKVGKQPKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGV 159 (365)
T ss_pred HHHHHHhhhcccCceeEeeeehhHhHHHHHHHhcccccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccce
Confidence 88888888866533123344444322 3344444322222211 112 2233444332 2333333555554456777
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
-++.. .. +. ++.++|.|..-.-+. ....+..+ .++..+.-|.+|..| ++.++.+++++++
T Consensus 160 ~v~~~--p~---~~---~~~~~v~D~SS~ils----r~iDvsk~------dviyagaQKnlGpaG--ltvvIvr~~~l~r 219 (365)
T COG1932 160 EVPEL--PD---IG---SDGLLVADASSAILS----RPIDVSKY------DVIYAGAQKNLGPAG--LTVVIVRPDLLER 219 (365)
T ss_pred EccCC--CC---CC---CCceEEEecccHHhc----CCCChhHc------ceEEEehhhccCccc--eEEEEEcHHHHhc
Confidence 76621 10 10 136788887665432 22233333 377888999999777 8999999999888
Q ss_pred HHHH-------------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee---ecCC
Q 014172 324 CNKI-------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM---SEPQ 387 (429)
Q Consensus 324 l~~~-------------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~---~~p~ 387 (429)
+... .....-+|+.++.+.....++--. ..-.++.+.++-+++.+.+++.+++-+-... ....
T Consensus 220 ~~~~~~P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk-~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~R 298 (365)
T COG1932 220 AESYTLPSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLK-SQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANR 298 (365)
T ss_pred ccccCCchHhhchhhhccCCccCCcHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhc
Confidence 7553 111222345555444433332100 1223667778888899999999987521111 1345
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCC
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~g 425 (429)
+-|-+.+++... .=+..|..++.+++.
T Consensus 299 S~mnV~f~~~~~-----------~ld~~fv~eae~~gl 325 (365)
T COG1932 299 SRMNVTFTLVDA-----------ELDKGFVAEAEAAGL 325 (365)
T ss_pred cceeEEEEcCcH-----------HHHHHHHHHHHHcCC
Confidence 567777877642 124566766665533
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0015 Score=61.75 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=87.8
Q ss_pred CHHHHHhhccc-----CCcEEEEcCC-CCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC----CCCCccc
Q 014172 217 DPKVLESKLTE-----KSRLLILCSP-SNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP----ATHTSFA 285 (429)
Q Consensus 217 d~e~l~~~l~~-----~~~~i~l~~p-~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~----~~~~~~~ 285 (429)
.++++++.|.. ++.+-+|..| +...| ...+++..+.|-++|++| ++..|+||++.+..-.| +.++.+.
T Consensus 254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh-~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKH-GVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhc-CeEEEeeeeecCCCccCceeeehhcCCC
Confidence 46666766642 3444455555 66555 567889999999999999 99999999988643222 1222222
Q ss_pred cCCCCCCceEEEeccChhcccccceeeEEEcCHHHHH-HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~-~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
+- .-+-+|||-|- .| ||... ++++. .-.++-..|..-+....+ +..+++. -.-+.+.+..
T Consensus 333 ~P-------pD~vTFSKK~q-~g---Gffh~-~~frpn~pYrifNTWmGdP~k~ll--l~~vv~~-----I~~~~Ll~n~ 393 (484)
T KOG1405|consen 333 SP-------PDVVTFSKKFQ-TG---GFFHD-EEFRPNEPYRIFNTWMGDPSKNLL--LEEVVQE-----IKREDLLNNV 393 (484)
T ss_pred CC-------ccceehhhhhh-cC---ccccC-cccCCCchHHHhhhhcCChHHHHH--HHHHHHH-----HhHHHHHHHH
Confidence 21 22667999995 66 66543 33322 223333333322332222 1222221 0012333444
Q ss_pred HHHHHHHHHHhccC----CC-ceeecCCceEEEEEecCC
Q 014172 365 RERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFST 398 (429)
Q Consensus 365 ~~~r~~l~~~L~~l----~g-~~~~~p~~~~~~~~~l~~ 398 (429)
+..-+.+..+|.++ || +.-.+..|.| +..++|.
T Consensus 394 ~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF-~a~d~ps 431 (484)
T KOG1405|consen 394 AHVGKALLKGLLELQAKYPGKINNLRGRGTF-IAWDCPS 431 (484)
T ss_pred HHHHHHHHHHHHHHHHhCchhhhcccccceE-EEEeCCC
Confidence 44555666665543 54 4444666766 6677775
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00075 Score=65.95 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=99.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCC--------CCCcEEEecChHHHHHHHHHHh------cCCCC------------EEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSY--------TPDQILVSNGAKQSILQAVLAV------CSPGD------------EVI 183 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~--------~~~~i~~t~G~~~al~~~l~~l------~~~gd------------~Vl 183 (429)
..+-..||..-+.+|+.+..+++- +.--|+.++.+...+-.++.+- ++.+. .+.
T Consensus 107 ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~Y 186 (511)
T KOG0628|consen 107 SSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVAY 186 (511)
T ss_pred cCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheEE
Confidence 445568999999999999887541 1224555555444444444331 22221 356
Q ss_pred EcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC-Cc----EEEEcCCCCCccCCCCHHHHHHHHHHHH
Q 014172 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK-SR----LLILCSPSNPTGSVYPKNLLDEIARIVA 258 (429)
Q Consensus 184 v~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~-~~----~i~l~~p~NPtG~~~~~~~l~~I~~~a~ 258 (429)
+.+.++.+....+...|++.+.++.+. |+.++.+.|++++.++ .+ .+++. +--|-.+..-+++.+|..+|+
T Consensus 187 ~SDqahssveka~~i~~VklR~l~td~--n~~mr~~~L~~AIe~D~arGlIPf~v~a--t~GTT~~ca~D~l~elg~Vc~ 262 (511)
T KOG0628|consen 187 CSDQAHSSVEKACLIAGVKLRALPTDE--NFGMRGDTLRKAIEEDIARGLIPFFVCA--TLGTTSSCAFDELEELGPVCR 262 (511)
T ss_pred ecCcccchHHHhHhhcceeEEEeeccc--CcCCCHHHHHHHHHHHHhCCCccEEEEE--eecCccccccccHHHhcchhh
Confidence 778899999999999999999999864 8999999999999752 12 22222 222333446677999999999
Q ss_pred hCCCeEEEEccCCccccc
Q 014172 259 KHPRLLVLSDEIYEHIIY 276 (429)
Q Consensus 259 ~~~~i~vi~Deay~~~~~ 276 (429)
++ ++|+.+|.+|++-.+
T Consensus 263 ~~-glWLHVDAAYAGsa~ 279 (511)
T KOG0628|consen 263 EE-GLWLHVDAAYAGSAF 279 (511)
T ss_pred hc-CEEEEeehhhccccc
Confidence 99 999999999996443
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.017 Score=53.82 Aligned_cols=212 Identities=12% Similarity=0.102 Sum_probs=131.5
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc--CCCCCCCCCCC---HHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE--GFTRYTPNAGT---LELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~--~~~~Y~~~~G~---~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
..+.+.|.|..|...+. |....+.+.+.+.. ...-|+...|. ...-+-+-..++...| ...++|.+.++-|.
T Consensus 63 ~~d~~~iYlcGNSLGLm-PK~t~~~~~~eLDkWak~av~gH~~GkvPW~~~De~il~l~~~iVG--A~e~EvavmNsLTv 139 (465)
T KOG3846|consen 63 SDDKPVIYLCGNSLGLM-PKSTRNSINAELDKWAKCAVEGHFKGKVPWVSIDEPILPLLAPIVG--AQENEVAVMNSLTV 139 (465)
T ss_pred CCCCCeEEEeccccccC-chhhHhHHHHHHHHHHhhhhhcccccccceeecchhhhhhhhhhcc--CCchhhhhHhhhhh
Confidence 45667899988776654 44444444443321 11222222221 1112223333333344 46789999999999
Q ss_pred HHHHHHHHhcCCC---CEEEEcCCCCCCh----HHHHHHcCCEEE--EecCCC-CCCCCCCHHHHHhhccc---CCcEEE
Q 014172 167 SILQAVLAVCSPG---DEVIIPAPFWVSY----PEMARIADATPV--ILPTRI-SENFLLDPKVLESKLTE---KSRLLI 233 (429)
Q Consensus 167 al~~~l~~l~~~g---d~Vlv~~p~y~~~----~~~~~~~g~~~~--~v~~~~-~~~~~~d~e~l~~~l~~---~~~~i~ 233 (429)
.+..++..+.+|- -+|+++.-+|++- ...+++.|..+. .+-+.+ ++...+..|++.+.|+. ...+|+
T Consensus 140 Nlh~Ll~sFyKPTekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~ 219 (465)
T KOG3846|consen 140 NLHSLLISFYKPTEKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVC 219 (465)
T ss_pred HHHHHHHHhcCCcchhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEE
Confidence 9999999998875 3699998888863 356677787642 122222 34445778888888864 344556
Q ss_pred EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ceee
Q 014172 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLG 312 (429)
Q Consensus 234 l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G 312 (429)
+...+.-||..++ +.+|-..-+. +|++|=.|-+++. |. .++ .+ ..|+..+.|+.--|.+. +| -.+|
T Consensus 220 fSGvqyYTGQ~Fd---i~aIT~Agq~-kgc~VGfDLAHAv----gN--VpL-~L-HdWgVDFACWCSYKYln-aGaGgIg 286 (465)
T KOG3846|consen 220 FSGVQYYTGQYFD---IGAITFAGQF-KGCLVGFDLAHAV----GN--VPL-QL-HDWGVDFACWCSYKYLN-AGAGGIG 286 (465)
T ss_pred eecceeecccccc---hhhhhhcccC-CCcEechhhhhhh----cC--Cce-EE-eecCCceEEEeeecccc-cCCCccc
Confidence 7888999999999 8888844444 4999999999875 22 122 12 13788888988888875 33 2345
Q ss_pred EEEcCHH
Q 014172 313 YIAGPKH 319 (429)
Q Consensus 313 ~v~~~~~ 319 (429)
-+...++
T Consensus 287 GlFvHek 293 (465)
T KOG3846|consen 287 GLFVHEK 293 (465)
T ss_pred eeeeehh
Confidence 5554443
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0045 Score=56.37 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=108.2
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc--CCC-CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC-CC
Q 014172 139 SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--SPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISE-NF 214 (429)
Q Consensus 139 ~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~--~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~ 214 (429)
..++...-...|+..-.+.+++--.+-..+.+.+..+. +|. ..|+-+.-.-.+....+-.+|.+++.+.--.++ ..
T Consensus 60 ne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~krpkakyiiw~ridqks~~ksi~~agfepiiie~i~d~d~l 139 (432)
T KOG3843|consen 60 NEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRHKRPKAKYIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDEL 139 (432)
T ss_pred HHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhhcCCcccEEEEEecchHHHHHHHHhcCCCceeeeccccchHH
Confidence 33444333344554333444433333334555555553 343 445555544445556667789998887533332 23
Q ss_pred CCCHHHHHhhccc-CCc-EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 215 LLDPKVLESKLTE-KSR-LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 215 ~~d~e~l~~~l~~-~~~-~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
.-|++.+++.+++ ... .+++.+... .=+.-+++.+++|+.+|..| ++.-|+..+|+.-. .....-++.-. ..+
T Consensus 140 ~tdleav~~~iee~g~dcilci~stts-cfapr~pd~leaiaaica~~-diphivnnayglqs--ee~i~~iaa~~-~~g 214 (432)
T KOG3843|consen 140 ITDLEAVEAIIEELGEDCILCIHSTTS-CFAPRSPDNLEAIAAICAAH-DIPHIVNNAYGLQS--EECIHKIAAAA-ECG 214 (432)
T ss_pred HHhHHHHHHHHHHhCCceEEEEeeccc-ccCCCCCchHHHHHHHHHcc-Cchhhhccccccch--HHHHHHHHHHh-hhc
Confidence 3478888888765 333 333422211 11222567799999999999 99999999997421 00000111111 112
Q ss_pred c-eEEEeccChhcccccceeeEEEc--CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc
Q 014172 293 R-TLTVNGFSKAFAMTGWRLGYIAG--PKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 293 ~-~i~~~S~SK~~~~~G~R~G~v~~--~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
| .-++.|+.|.|-+|= .|.+++ .+.+++.+.+.-....+..++ .......|..
T Consensus 215 rida~vqsldknf~vpv--ggaiia~fk~n~iq~iak~ypgrasa~ps--~dllitll~~ 270 (432)
T KOG3843|consen 215 RIDAFVQSLDKNFMVPV--GGAIIAAFKDNFIQEIAKMYPGRASASPS--LDLLITLLSL 270 (432)
T ss_pred cHHHHHHHhhhcceeec--chhHhhHhHHHHHHHHHHhCCCccccCcc--HHHHHHHHHh
Confidence 2 246889999996442 144443 567888877764433333333 3344444544
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.16 Score=52.23 Aligned_cols=293 Identities=14% Similarity=0.210 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhcCCCeEE--cCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCC-----CCHH----HHHHHHHHHHhhcC
Q 014172 82 AITDQATALAQAGVSVIR--LAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA-----GTLE----LRSAICHKLKEENG 150 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~~i~--L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~-----G~~~----lr~~ia~~l~~~~g 150 (429)
++.+....+..+.+ ++. .+.|.=..-.|+.+.+.+.+.-.. .++|+|-+ |..| +...|++. -|
T Consensus 104 eml~~l~~ia~kNk-~~ksfIGmGYyn~~vP~~I~RNilenp~W-~TqYTPYQ~EIsQGRLEsllNyQTmi~dl----TG 177 (1001)
T KOG2040|consen 104 EMLQHLEDIASKNK-IWKSFIGMGYYNTHVPAVILRNILENPGW-YTQYTPYQAEISQGRLESLLNYQTMITDL----TG 177 (1001)
T ss_pred HHHHHHHHHHhhhh-HHHHhhccccccccCcHHHHHHhhhCCcc-eeccCCCchhhhhhhHHHHhhhHHhhhhc----cC
Confidence 44444444443332 333 233333333477776655543211 36677643 3222 22233333 35
Q ss_pred CCCCCCcE-EEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH----cCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 151 LSYTPDQI-LVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 151 ~~~~~~~i-~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
+++ .|. ++--|+..+-.+++..-..++.+.++...+|+.....++. .|.+++.. |+++....
T Consensus 178 L~~--aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~TRa~~~~i~v~~~----------~~~~~~~s- 244 (1001)
T KOG2040|consen 178 LPM--ANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVKTRAKGFGIKVVVS----------DIKEADYS- 244 (1001)
T ss_pred Ccc--cchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhhccccccceeEEec----------CHHHhhcc-
Confidence 433 233 3334443333333333355677899999999988876653 23333222 33333221
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEecc---Ch
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF---SK 302 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~---SK 302 (429)
.++...+++-.|.. -|.+.+ +.++++.+++. +.+++.--- + ....+..-++.++..|.++|- .-
T Consensus 245 ~~~v~gvlvQYP~t-~G~i~d---~~el~~~a~~~-~s~vv~atD---L-----LaLtiLrpPgefGaDIavGSsQRFGV 311 (1001)
T KOG2040|consen 245 SKDVSGVLVQYPDT-EGSVLD---FDELVELAHAN-GSLVVMATD---L-----LALTILRPPGEFGADIAVGSSQRFGV 311 (1001)
T ss_pred ccceeEEEEEcCCC-CCcccC---HHHHHHHhhcc-CceEEEeeh---h-----hHHHccCChhhcCceeeeccccccCc
Confidence 23466777777765 688888 88888999887 766653211 1 112333345556777888874 33
Q ss_pred hcccccceeeEEEcCHHHHHHH----------------------------HHHhhcccCCCch--HHHHHHHHHHhcCCC
Q 014172 303 AFAMTGWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASS--ISQKAGVAALGLGYA 352 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l----------------------------~~~~~~~~~~~~~--~~q~aa~~~l~~~~~ 352 (429)
-+|..|.-.||..+.+++.+.+ ++-+...+.|+.. ++-.++..++-.
T Consensus 312 PlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTAQALLANmaAmyaiYH--- 388 (1001)
T KOG2040|consen 312 PLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTAQALLANMAAMYAIYH--- 388 (1001)
T ss_pred cccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHHHHHHHHHHHHHhhhc---
Confidence 3343444455544444433321 1111112222211 112222223323
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHh
Q 014172 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423 (429)
Q Consensus 353 ~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 423 (429)
+.+.++++.++.....-++..+|+.. |-++. .-.||=.+++.-. .+.+++.++..++
T Consensus 389 Gp~gL~~IArrvh~~T~~l~~~l~~a-ghel~--~k~fFDTLkI~~~-----------~s~~~~l~rA~~~ 445 (1001)
T KOG2040|consen 389 GPHGLKEIARRVHNLTLILAEGLKNA-GHELQ--HKPFFDTLKIRCG-----------CSAEEVLDRAAKR 445 (1001)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhc-chhhc--cccccceEEEEec-----------CcHHHHHHHHHhh
Confidence 46778888888888888999999876 64443 2226655555311 1456666666554
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.34 Score=49.88 Aligned_cols=169 Identities=22% Similarity=0.256 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecC-hH----HHHHHHHHHh-cCCC----CEEEEcCCCCCChHHHHHHcCC
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNG-AK----QSILQAVLAV-CSPG----DEVIIPAPFWVSYPEMARIADA 201 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G-~~----~al~~~l~~l-~~~g----d~Vlv~~p~y~~~~~~~~~~g~ 201 (429)
+|+.++.+.+.++|...-|. +++.+.+. +. .++. ++++. ..+| ...|+|...|..-...+.++|.
T Consensus 578 qGY~~lf~~Le~~Lc~iTG~----D~~s~QPNsGA~GEYaGL~-~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Magm 652 (1001)
T KOG2040|consen 578 QGYQQLFTELEKDLCEITGF----DSFSLQPNSGAQGEYAGLR-VIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMAGM 652 (1001)
T ss_pred hhHHHHHHHHHHHhheeecc----cceeecCCCCcccchhhHH-HHHHHHHhccCCcceeEEEeecccCCChhhHHhcCC
Confidence 68888888898888876663 34544432 22 2333 34443 3344 3578888899999999999999
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCc----cc
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE----HI 274 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~----~~ 274 (429)
+++.|.++.. +.+|..+|++..++ +-.++.++.|+- -|.. ++.+++++++.++| |--|..|.+-- ++
T Consensus 653 kvvpV~~~~~--G~id~~dLk~kaekh~~~Laa~MvTYPST-~Gvf--E~~i~d~cd~iHeh-GGQVYlDGANMNAqVGl 726 (1001)
T KOG2040|consen 653 KVVPVGCDAN--GNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVF--EEGIDDICDIIHEH-GGQVYLDGANMNAQVGL 726 (1001)
T ss_pred EEEEeeccCC--CCccHHHHHHHHHHhhhhhheeEEecccc-cccc--cccHHHHHHHHHhc-CCEEEecCCCccceecc
Confidence 9999998754 45999999887654 456777888864 2333 34599999999999 88888897643 22
Q ss_pred ccCCCCCCccccCCCCCCceEEEeccChhccc----ccceeeEEEcCHHHHH
Q 014172 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAM----TGWRLGYIAGPKHFVA 322 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~----~G~R~G~v~~~~~~~~ 322 (429)
+. +++.+..+.=--++|+|.+ .|..+|=+-..+.++.
T Consensus 727 c~-----------pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLap 767 (1001)
T KOG2040|consen 727 CR-----------PGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP 767 (1001)
T ss_pred cC-----------CccccccceeecccceeeecCCCCCCCCCccchhhhccc
Confidence 21 1223333444557787754 3444555544444443
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.58 E-value=19 Score=33.89 Aligned_cols=278 Identities=12% Similarity=0.115 Sum_probs=140.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC--------CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP--------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~--------~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
..+|+|+.|..- .|..|+..+.+.+-+ +.+-+- +.....+.+.-...+.+.++++-+-+-+++..|+|.
T Consensus 6 ~~vvnFaaGPAk--lp~~VL~e~qkdl~n-~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~ 82 (370)
T KOG2790|consen 6 ERVVNFAAGPAK--LPESVLLEAQKDLLN-FNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTG 82 (370)
T ss_pred cceeecCCCccc--CCHHHHHHHHHHhhc-cCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcc
Confidence 358999888654 355555544443322 111100 111233444444555556665422233455566777
Q ss_pred HHHHHHHHhc--CCC---CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC-CCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 167 SILQAVLAVC--SPG---DEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 167 al~~~l~~l~--~~g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
-...+...++ +-| |-|+.-.=+--.+.++-+......+..+..... +-.+|.+..+. +++.+.+++|.----
T Consensus 83 qFaAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~~~~~~V~~~~k~y~ygkvPd~~~w~~--~~da~yvyyCaNETV 160 (370)
T KOG2790|consen 83 QFAAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKYGTPNIVIPKLKSYTYGKVPDPSTWEL--NPDASYVYYCANETV 160 (370)
T ss_pred cccccchhhhccccCCccceEEeccccHHHHHHHHhhCCceEEeccccccccCcCCChhhccc--CCCccEEEEecCcee
Confidence 7766666665 344 556544422223445444444444444443222 12345544432 455667777765444
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~ 320 (429)
-|+-++.- - +-.-+ +.+++.|-.-.++. .+..+.. ..+++..--|.+|.+|. -.++..+++
T Consensus 161 HGVEf~~~-----P-~~~~~-~~vlVaDmSSnflS----rpvDvsk------~gvi~aGAQKN~G~aG~--Tvvivr~dl 221 (370)
T KOG2790|consen 161 HGVEFDFI-----P-VNDPK-GAVLVADMSSNFLS----RPVDVSK------FGVIFAGAQKNVGPAGV--TVVIVRKDL 221 (370)
T ss_pred eceecCCC-----C-CCCCC-CceEEEecccchhc----CCccchh------cceEEeccccccCcccc--EEEEEehhh
Confidence 56555411 0 11123 77788887655432 2223322 23778888999997874 446667776
Q ss_pred HHHHHHHh------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee--cC
Q 014172 321 VAACNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS--EP 386 (429)
Q Consensus 321 ~~~l~~~~------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~--~p 386 (429)
+....... ....-.++.++.++.--.++.- ...-.+..+.+.-.+..+.+++.+.+..|+-.. .|
T Consensus 222 lg~~~~~tP~v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~i-l~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~ 300 (370)
T KOG2790|consen 222 LGNALDITPSVLDYKIMDKNNSLYNTPPCFGIYVMGLVFEWI-LEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEP 300 (370)
T ss_pred hcccccCCccccceeeeccccccccCCCeeeeeehhhHHHHH-HhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccch
Confidence 65433221 1111234544444333322210 002235667777788889999999886564322 22
Q ss_pred --CceEEEEEecC
Q 014172 387 --QGAFYLFIDFS 397 (429)
Q Consensus 387 --~~~~~~~~~l~ 397 (429)
.+-|-+.+++.
T Consensus 301 ~~RS~MNV~Fri~ 313 (370)
T KOG2790|consen 301 SVRSRMNVPFRIE 313 (370)
T ss_pred hhhhhcccceeec
Confidence 23455556664
|
|
| >COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.09 E-value=5.5 Score=35.92 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=66.8
Q ss_pred cEEEecChHHHHHHHHHHhcCCCCEE---EEcCC-C---CC-------ChHHHHHHcCCEEEEecCCCCCCCCCCHHHHH
Q 014172 157 QILVSNGAKQSILQAVLAVCSPGDEV---IIPAP-F---WV-------SYPEMARIADATPVILPTRISENFLLDPKVLE 222 (429)
Q Consensus 157 ~i~~t~G~~~al~~~l~~l~~~gd~V---lv~~p-~---y~-------~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 222 (429)
-+.+-+|+..+..++..++ +.|-.| +...| . |. .....++..|..++.....-+ ..-..++|.
T Consensus 3 ~~aL~SGGKDS~~Al~~a~-~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g~--~e~eve~L~ 79 (223)
T COG2102 3 VIALYSGGKDSFYALYLAL-EEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSGE--EEREVEELK 79 (223)
T ss_pred EEEEEecCcHHHHHHHHHH-HcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCcc--chhhHHHHH
Confidence 3677789988887665554 455322 22222 1 11 123456778999888887532 224677787
Q ss_pred hhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEE
Q 014172 223 SKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266 (429)
Q Consensus 223 ~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi 266 (429)
+++.. +...|+ +|.+++..+..++-.+|++- ++.++
T Consensus 80 ~~l~~l~~d~iv-------~GaI~s~yqk~rve~lc~~l-Gl~~~ 116 (223)
T COG2102 80 EALRRLKVDGIV-------AGAIASEYQKERVERLCEEL-GLKVY 116 (223)
T ss_pred HHHHhCcccEEE-------EchhhhHHHHHHHHHHHHHh-CCEEe
Confidence 77764 455776 89999999999999999999 88776
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 429 | ||||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 7e-80 | ||
| 1bkg_A | 385 | Aspartate Aminotransferase From Thermus Thermophilu | 2e-74 | ||
| 1bjw_A | 382 | Aspartate Aminotransferase From Thermus Thermophilu | 6e-74 | ||
| 1b5o_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Sin | 7e-74 | ||
| 1gck_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Dou | 2e-73 | ||
| 1gc3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 3e-72 | ||
| 5bj3_A | 385 | Thermus Thermophilus Aspartate Aminotransferase Tet | 5e-72 | ||
| 1gde_A | 389 | Crystal Structure Of Pyrococcus Protein A-1 E-form | 2e-63 | ||
| 1dju_A | 388 | Crystal Structure Of Aromatic Aminotransferase From | 2e-63 | ||
| 1o4s_A | 389 | Crystal Structure Of Aspartate Aminotransferase (Tm | 4e-59 | ||
| 3e2z_B | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 3e-41 | ||
| 1xi9_A | 406 | Alanine Aminotransferase From Pyrococcus Furiosus P | 3e-41 | ||
| 2z61_A | 370 | Crystal Structure Of Mj0684 From Methanococcus Jann | 5e-41 | ||
| 3e2f_A | 410 | Crystal Structure Of Mouse Kynurenine Aminotransfer | 1e-40 | ||
| 1w7n_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-36 | ||
| 3fvs_A | 422 | Human Kynurenine Aminotransferase I In Complex With | 4e-36 | ||
| 1w7l_A | 422 | Crystal Structure Of Human Kynurenine Aminotransfer | 4e-36 | ||
| 1u08_A | 386 | Crystal Structure And Reactivity Of Ybdl From Esche | 8e-35 | ||
| 2o0r_A | 411 | The Three-Dimensional Structure Of N-Succinyldiamin | 4e-34 | ||
| 1v2d_A | 381 | Crystal Structure Of T.Th Hb8 Glutamine Aminotransf | 5e-31 | ||
| 1yiy_A | 429 | Aedes Aegypti Kynurenine Aminotransferase Length = | 1e-30 | ||
| 1yiz_A | 429 | Aedes Aegypti Kynurenine Aminotrasferase Length = 4 | 6e-30 | ||
| 2gb3_A | 409 | Crystal Structure Of Aspartate Aminotransferase (Tm | 1e-26 | ||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 1e-23 | ||
| 1bw0_A | 416 | Crystal Structure Of Tyrosine Aminotransferase From | 4e-23 | ||
| 3ele_A | 398 | Crystal Structure Of Amino Transferase (rer07020700 | 2e-21 | ||
| 3b46_A | 447 | Crystal Structure Of Bna3p, A Putative Kynurenine A | 3e-21 | ||
| 3dyd_A | 427 | Human Tyrosine Aminotransferase Length = 427 | 2e-18 | ||
| 3pdx_A | 402 | Crystal Structural Of Mouse Tyrosine Aminotransfera | 2e-18 | ||
| 3h14_A | 391 | Crystal Structure Of A Putative Aminotransferase Fr | 3e-16 | ||
| 3b1c_A | 392 | Crystal Structure Of Betac-S Lyase From Streptococc | 7e-16 | ||
| 1c7n_A | 399 | Crystal Structure Of Cystalysin From Treponema Dent | 1e-15 | ||
| 2o1b_A | 404 | Structure Of Aminotransferase From Staphylococcus A | 1e-15 | ||
| 3t32_B | 383 | Crystal Structure Of A Putative C-S Lyase From Baci | 2e-15 | ||
| 2dou_A | 376 | Probable N-Succinyldiaminopimelate Aminotransferase | 2e-15 | ||
| 3nra_A | 407 | Crystal Structure Of An Aspartate Aminotransferase | 4e-15 | ||
| 3l8a_A | 421 | Crystal Structure Of Metc From Streptococcus Mutans | 4e-15 | ||
| 4dgt_A | 391 | Crystal Structure Of Plp-Bound Putative Aminotransf | 1e-14 | ||
| 3asa_A | 400 | Crystal Structure Of Apo-Ll-Diaminopimelate Aminotr | 2e-14 | ||
| 2zc0_A | 407 | Crystal Structure Of An Archaeal Alanine:glyoxylate | 3e-14 | ||
| 3cq5_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 9e-13 | ||
| 3cq4_A | 376 | Histidinol-Phosphate Aminotransferase From Coryneba | 1e-12 | ||
| 3jtx_A | 396 | Crystal Structure Of Aminotransferase (np_283882.1) | 4e-12 | ||
| 3cq6_A | 369 | Histidinol-Phosphate Aminotransferase From Coryneba | 5e-12 | ||
| 1iax_A | 428 | Crystal Structure Of Acc Synthase Complexed With Pl | 1e-11 | ||
| 3qgu_A | 449 | L,L-Diaminopimelate Aminotransferase From Chalmydom | 2e-11 | ||
| 3f6t_A | 533 | Crystal Structure Of Aspartate Aminotransferase (E. | 2e-11 | ||
| 2zy3_A | 546 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 4e-11 | ||
| 2zy5_A | 546 | R487a Mutant Of L-Aspartate Beta-Decarboxylase Leng | 5e-11 | ||
| 2z1z_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 3e-10 | ||
| 3fdd_A | 533 | The Crystal Structure Of The Pseudomonas Dacunhae A | 4e-10 | ||
| 3eia_A | 432 | Crystal Structure Of K270q Variant Of Ll-Diaminopim | 7e-10 | ||
| 1fg3_A | 356 | Crystal Structure Of L-Histidinol Phosphate Aminotr | 9e-10 | ||
| 3ei8_A | 432 | Crystal Structure Of K270n Variant Of Ll-Diaminopim | 1e-09 | ||
| 3op7_A | 375 | Crystal Structure Of A Plp-Dependent Aminotransfera | 1e-09 | ||
| 3euc_A | 367 | Crystal Structure Of Histidinol-Phosphate Aminotran | 1e-09 | ||
| 1gew_A | 356 | Crystal Structure Of Histidinol-Phosphate Aminotran | 2e-09 | ||
| 3aov_A | 448 | Crystal Structure Of Pyrococcus Horikoshii Kynureni | 3e-09 | ||
| 1x0m_A | 403 | A Human Kynurenine Aminotransferase Ii Homologue Fr | 3e-09 | ||
| 2zy2_A | 544 | Dodecameric L-Aspartate Beta-Decarboxylase Length = | 4e-09 | ||
| 2z20_A | 432 | Crystal Structure Of Ll-diaminopimelate Aminotransf | 4e-09 | ||
| 3ezs_A | 376 | Crystal Structure Of Aminotransferase Aspb (Np_2074 | 5e-09 | ||
| 1b8g_A | 429 | 1-aminocyclopropane-1-carboxylate Synthase Length = | 7e-09 | ||
| 1ynu_A | 473 | Crystal Structure Of Apple Acc Synthase In Complex | 7e-09 | ||
| 1m7y_A | 435 | Crystal Structure Of Apple Acc Synthase In Complex | 8e-09 | ||
| 4fl0_A | 456 | Crystal Structure Of Ald1 From Arabidopsis Thaliana | 8e-09 | ||
| 4ge7_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 1e-08 | ||
| 4gdy_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 2e-08 | ||
| 2xh1_A | 425 | Crystal Structure Of Human Kat Ii-Inhibitor Complex | 3e-08 | ||
| 2r2n_A | 425 | The Crystal Structure Of Human Kynurenine Aminotran | 3e-08 | ||
| 3ue8_A | 439 | Kynurenine Aminotransferase Ii Inhibitors Length = | 3e-08 | ||
| 3piu_A | 410 | High-Resolution Structure Of Native Malus Domestica | 4e-08 | ||
| 3tcm_A | 500 | Crystal Structure Of Alanine Aminotransferase From | 6e-08 | ||
| 3fdb_A | 377 | Crystal Structure Of A Putative Plp-Dependent Beta- | 1e-07 | ||
| 2qlr_A | 425 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-07 | ||
| 2vgz_A | 427 | Crystal Structure Of Human Kynurenine Aminotransfer | 1e-07 | ||
| 2f8j_A | 347 | Crystal Structure Of Histidinol-phosphate Aminotran | 2e-07 | ||
| 1uu1_A | 335 | Complex Of Histidinol-Phosphate Aminotransferase (H | 2e-07 | ||
| 3dzz_A | 391 | Crystal Structure Of A Putative Plp-Dependent Amino | 2e-07 | ||
| 3ihj_A | 498 | Human Alanine Aminotransferase 2 In Complex With Pl | 4e-07 | ||
| 3hdo_A | 360 | Crystal Structure Of A Histidinol-Phosphate Aminotr | 7e-07 | ||
| 1h1c_A | 335 | Histidinol-Phosphate Aminotransferase (Hisc) From T | 1e-06 | ||
| 1d2f_A | 390 | X-Ray Structure Of Maly From Escherichia Coli: A Py | 1e-06 | ||
| 3get_A | 365 | Crystal Structure Of Putative Histidinol-Phosphate | 2e-06 | ||
| 3fkd_A | 350 | The Crystal Structure Of L-Threonine-O-3-Phosphate | 2e-06 | ||
| 3ffh_A | 363 | The Crystal Structure Of Histidinol-phosphate Amino | 4e-06 | ||
| 3ly1_A | 354 | Crystal Structure Of Putative Histidinol-Phosphate | 1e-05 | ||
| 3p1t_A | 337 | Crystal Structure Of A Putative Aminotransferase (B | 1e-05 | ||
| 3ftb_A | 361 | The Crystal Structure Of The Histidinol-Phosphate A | 3e-05 | ||
| 1vp4_A | 425 | Crystal Structure Of A Putative Aminotransferase (T | 7e-05 | ||
| 2c7t_A | 418 | Crystal Structure Of The Plp-Bound Form Of Btrr, A | 1e-04 | ||
| 1lkc_A | 364 | Crystal Structure Of L-Threonine-O-3-Phosphate Deca | 4e-04 |
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
| >pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With Maleate Length = 385 | Back alignment and structure |
|
| >pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus Length = 382 | Back alignment and structure |
|
| >pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double Mutant 1 Complexed With Aspartate Length = 385 | Back alignment and structure |
|
| >pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 2 Complexed With Tryptophan Length = 385 | Back alignment and structure |
|
| >pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra Mutant 1 Length = 385 | Back alignment and structure |
|
| >pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form Length = 389 | Back alignment and structure |
|
| >pdb|1DJU|A Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3 Length = 388 | Back alignment and structure |
|
| >pdb|1O4S|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1255) From Thermotoga Maritima At 1.90 A Resolution Length = 389 | Back alignment and structure |
|
| >pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii In Complex With Kynurenine Length = 410 | Back alignment and structure |
|
| >pdb|1XI9|A Chain A, Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001 Length = 406 | Back alignment and structure |
|
| >pdb|2Z61|A Chain A, Crystal Structure Of Mj0684 From Methanococcus Jannaschii Reveals Its Similarity In The Active Site To Kynurenine Aminotransferases Length = 370 | Back alignment and structure |
|
| >pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii, Plp-Bound Form Length = 410 | Back alignment and structure |
|
| >pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I In Pmp Form Length = 422 | Back alignment and structure |
|
| >pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With Glycerol Length = 422 | Back alignment and structure |
|
| >pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I Length = 422 | Back alignment and structure |
|
| >pdb|1U08|A Chain A, Crystal Structure And Reactivity Of Ybdl From Escherichia Coli Identify A Methionine Aminotransferase Function. Length = 386 | Back alignment and structure |
|
| >pdb|2O0R|A Chain A, The Three-Dimensional Structure Of N-Succinyldiaminopimelate Aminotransferase From Mycobacterium Tuberculosis Length = 411 | Back alignment and structure |
|
| >pdb|1V2D|A Chain A, Crystal Structure Of T.Th Hb8 Glutamine Aminotransferase Length = 381 | Back alignment and structure |
|
| >pdb|1YIY|A Chain A, Aedes Aegypti Kynurenine Aminotransferase Length = 429 | Back alignment and structure |
|
| >pdb|1YIZ|A Chain A, Aedes Aegypti Kynurenine Aminotrasferase Length = 429 | Back alignment and structure |
|
| >pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698) From Thermotoga Maritima At 2.50 A Resolution Length = 409 | Back alignment and structure |
|
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1BW0|A Chain A, Crystal Structure Of Tyrosine Aminotransferase From Trypanosoma Cruzi Length = 416 | Back alignment and structure |
|
| >pdb|3ELE|A Chain A, Crystal Structure Of Amino Transferase (rer070207001803) From Eubacterium Rectale At 2.10 A Resolution Length = 398 | Back alignment and structure |
|
| >pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine Aminotransferase From Saccharomyces Cerevisiae Length = 447 | Back alignment and structure |
|
| >pdb|3DYD|A Chain A, Human Tyrosine Aminotransferase Length = 427 | Back alignment and structure |
|
| >pdb|3PDX|A Chain A, Crystal Structural Of Mouse Tyrosine Aminotransferase Length = 402 | Back alignment and structure |
|
| >pdb|3H14|A Chain A, Crystal Structure Of A Putative Aminotransferase From Silicibacter Pomeroyi Length = 391 | Back alignment and structure |
|
| >pdb|3B1C|A Chain A, Crystal Structure Of Betac-S Lyase From Streptococcus Anginosus: Internal Aldimine Form Length = 392 | Back alignment and structure |
|
| >pdb|1C7N|A Chain A, Crystal Structure Of Cystalysin From Treponema Denticola Contains A Pyridoxal 5'-Phosphate Cofactor Length = 399 | Back alignment and structure |
|
| >pdb|2O1B|A Chain A, Structure Of Aminotransferase From Staphylococcus Aureus Length = 404 | Back alignment and structure |
|
| >pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase (Ttha0342) From Thermus Thermophilus Hb8 Length = 376 | Back alignment and structure |
|
| >pdb|3NRA|A Chain A, Crystal Structure Of An Aspartate Aminotransferase (Yp_354942.1) From Rhodobacter Sphaeroides 2.4.1 At 2.15 A Resolution Length = 407 | Back alignment and structure |
|
| >pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans Length = 421 | Back alignment and structure |
|
| >pdb|4DGT|A Chain A, Crystal Structure Of Plp-Bound Putative Aminotransferase From Clostridium Difficile 630 Crystallized With Magnesium Formate Length = 391 | Back alignment and structure |
|
| >pdb|3ASA|A Chain A, Crystal Structure Of Apo-Ll-Diaminopimelate Aminotransferase From Chlamydia Trachomatis Length = 400 | Back alignment and structure |
|
| >pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate Aminotransferase Length = 407 | Back alignment and structure |
|
| >pdb|3CQ5|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum In Complex With Pmp Length = 369 | Back alignment and structure |
|
| >pdb|3CQ4|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Length = 376 | Back alignment and structure |
|
| >pdb|3JTX|A Chain A, Crystal Structure Of Aminotransferase (np_283882.1) From Neisseria Meningitidis Z2491 At 1.91 A Resolution Length = 396 | Back alignment and structure |
|
| >pdb|3CQ6|A Chain A, Histidinol-Phosphate Aminotransferase From Corynebacterium Glutamicum Holo-Form (Plp Covalently Bound ) Length = 369 | Back alignment and structure |
|
| >pdb|1IAX|A Chain A, Crystal Structure Of Acc Synthase Complexed With Plp Length = 428 | Back alignment and structure |
|
| >pdb|3QGU|A Chain A, L,L-Diaminopimelate Aminotransferase From Chalmydomonas Reinhardtii Length = 449 | Back alignment and structure |
|
| >pdb|3F6T|A Chain A, Crystal Structure Of Aspartate Aminotransferase (E.C. 2.6.1.1) (Yp_194538.1) From Lactobacillus Acidophilus Ncfm At 2.15 A Resolution Length = 533 | Back alignment and structure |
|
| >pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase Length = 546 | Back alignment and structure |
|
| >pdb|2Z1Z|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-malate Ion Length = 432 | Back alignment and structure |
|
| >pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme Length = 533 | Back alignment and structure |
|
| >pdb|3EIA|A Chain A, Crystal Structure Of K270q Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With L-Glu: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate Aminotransferase Complexed With L-Histidinol Length = 356 | Back alignment and structure |
|
| >pdb|3EI8|A Chain A, Crystal Structure Of K270n Variant Of Ll-Diaminopimelate Aminotransferase From Arabidopsis Thaliana Complexed With Ll-Dap: External Aldimine Form Length = 432 | Back alignment and structure |
|
| >pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase (Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|3EUC|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase (Yp_297314.1) From Ralstonia Eutropha Jmp134 At 2.05 A Resolution Length = 367 | Back alignment and structure |
|
| >pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase Complexed With Pyridoxal 5'-Phosphate Length = 356 | Back alignment and structure |
|
| >pdb|3AOV|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Kynurenine Aminotransferase In Complex With Plp Length = 448 | Back alignment and structure |
|
| >pdb|1X0M|A Chain A, A Human Kynurenine Aminotransferase Ii Homologue From Pyrococcus Horikoshii Ot3 Length = 403 | Back alignment and structure |
|
| >pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase Length = 544 | Back alignment and structure |
|
| >pdb|2Z20|A Chain A, Crystal Structure Of Ll-diaminopimelate Aminotransferase From Arabidopsis Thaliana Length = 432 | Back alignment and structure |
|
| >pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1) From Helicobacter Pylori 26695 At 2.19 A Resolution Length = 376 | Back alignment and structure |
|
| >pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase Length = 429 | Back alignment and structure |
|
| >pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-Vinylglycine Length = 473 | Back alignment and structure |
|
| >pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L- Aminoethoxyvinylglycine Length = 435 | Back alignment and structure |
|
| >pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana Length = 456 | Back alignment and structure |
|
| >pdb|4GE7|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex Length = 425 | Back alignment and structure |
|
| >pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase Ii In Complex With Kynurenine Length = 425 | Back alignment and structure |
|
| >pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors Length = 439 | Back alignment and structure |
|
| >pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum Vulgare Length = 500 | Back alignment and structure |
|
| >pdb|3FDB|A Chain A, Crystal Structure Of A Putative Plp-Dependent Beta-Cystathionase (Aecd, Dip1736) From Corynebacterium Diphtheriae At 1.99 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 425 | Back alignment and structure |
|
| >pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii Length = 427 | Back alignment and structure |
|
| >pdb|2F8J|A Chain A, Crystal Structure Of Histidinol-phosphate Aminotransferase (ec 2.6.1.9) (imidazole Acetol-phosphate Transferase) (tm1040) From Thermotoga Maritima At 2.40 A Resolution Length = 347 | Back alignment and structure |
|
| >pdb|1UU1|A Chain A, Complex Of Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima (Apo-Form) Length = 335 | Back alignment and structure |
|
| >pdb|3DZZ|A Chain A, Crystal Structure Of A Putative Plp-Dependent Aminotransferase (Lbul_1103) From Lactobacillus Delbrueckii Subsp. At 1.61 A Resolution Length = 391 | Back alignment and structure |
|
| >pdb|3IHJ|A Chain A, Human Alanine Aminotransferase 2 In Complex With Plp Length = 498 | Back alignment and structure |
|
| >pdb|3HDO|A Chain A, Crystal Structure Of A Histidinol-Phosphate Aminotransferase From Geobacter Metallireducens Length = 360 | Back alignment and structure |
|
| >pdb|1H1C|A Chain A, Histidinol-Phosphate Aminotransferase (Hisc) From Thermotoga Maritima Length = 335 | Back alignment and structure |
|
| >pdb|1D2F|A Chain A, X-Ray Structure Of Maly From Escherichia Coli: A Pyridoxal-5'- Phosphate-Dependent Enzyme Acting As A Modulator In Mal Gene Expression Length = 390 | Back alignment and structure |
|
| >pdb|3GET|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Np_281508.1) From Campylobacter Jejuni At 2.01 A Resolution Length = 365 | Back alignment and structure |
|
| >pdb|3FKD|A Chain A, The Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Porphyromonas Gingivalis Length = 350 | Back alignment and structure |
|
| >pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate Aminotransferase From Listeria Innocua Clip11262. Length = 363 | Back alignment and structure |
|
| >pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate Aminotransferase (Yp_050345.1) From Erwinia Carotovora Atroseptica Scri1043 At 1.80 A Resolution Length = 354 | Back alignment and structure |
|
| >pdb|3P1T|A Chain A, Crystal Structure Of A Putative Aminotransferase (Bpsl1724) From Burkholderia Pseudomallei K96243 At 2.60 A Resolution Length = 337 | Back alignment and structure |
|
| >pdb|3FTB|A Chain A, The Crystal Structure Of The Histidinol-Phosphate Aminotransferase From Clostridium Acetobutylicum Length = 361 | Back alignment and structure |
|
| >pdb|1VP4|A Chain A, Crystal Structure Of A Putative Aminotransferase (Tm1131) From Thermotoga Maritima Msb8 At 1.82 A Resolution Length = 425 | Back alignment and structure |
|
| >pdb|2C7T|A Chain A, Crystal Structure Of The Plp-Bound Form Of Btrr, A Dual Functional Aminotransferase Involved In Butirosin Biosynthesis. Length = 418 | Back alignment and structure |
|
| >pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate Decarboxylase From Salmonella Enterica Length = 364 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 551 bits (1423), Expect = 0.0
Identities = 158/360 (43%), Positives = 217/360 (60%), Gaps = 15/360 (4%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV +V PS T+ I +A A+ G+ V +AGEPDF+TP I EA A+ +G TR
Sbjct: 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTR 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR AI KL+ +NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAP
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
FWVSYPEM ++A+ TPVILPT + F + P+ + +T K++LL+ +PSNPTG VY
Sbjct: 123 FWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTP 182
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ + IA+ VA L VLSDEIYE I+Y A H S + P +ER++ +GF+K +AM
Sbjct: 183 DEVRAIAQ-VAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+G++AGP V A KIQ TS + +Q +AA + V +M+ AF E
Sbjct: 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYE---NSQDCVQEMLAAFAE 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RR +++ + + G++ +P GAFY+F + +S C LLD+ QV
Sbjct: 299 RRRYMLDALNAMPGLECPKPDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQV 348
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 538 bits (1389), Expect = 0.0
Identities = 127/359 (35%), Positives = 205/359 (57%), Gaps = 22/359 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R++ + SKT+ + +A AL + G VI L AGEPDF TP + E + +++G +
Sbjct: 14 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK 73
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G ELR I ++ E +PDQ++V+NGAKQ++ A +A+ PGDEVI+ +P
Sbjct: 74 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 133
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
WVSY +A T ++ T +S+NF + +E L K++ +++ SP+NPTG VY +
Sbjct: 134 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 193
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
L+ + R +AK ++SDE+Y+ ++Y TS + ++R + +NGFSK+ +MT
Sbjct: 194 EFLEGLVR-LAKKRNFYIISDEVYDSLVYTDE-FTSILDVSEGFDRIVYINGFSKSHSMT 251
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY+ + A +KIQS TS ++++Q A + AL S MV+ F+ER
Sbjct: 252 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKAL------EVDNSYMVQTFKER 305
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
++F+V+ ++ GVK EP+GAFYLF + C LL++ +V
Sbjct: 306 KNFVVERLKKM-GVKFVEPEGAFYLFFKVR-------------GDDVKFCERLLEEKKV 350
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 532 bits (1374), Expect = 0.0
Identities = 145/361 (40%), Positives = 197/361 (54%), Gaps = 18/361 (4%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
+LS R+ V S+ + D +A VI L GEPDFDTP I E A+ +G T
Sbjct: 2 ALSDRLELVSASEIRKLFD----IAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLT 57
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 185
Y PN G LELR AI KLK++NG+ P +I+V GA Q+ L + A G+EV+IP
Sbjct: 58 HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIP 117
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P +VSY +A PV +PT + F L+ L+ +T+K+R LI+ SP NPTG+V
Sbjct: 118 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL 177
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L+EIA V +H L+V+SDE+YEH IY A H S ASL GM+ERT+TVNGFSK FA
Sbjct: 178 TKKDLEEIADFVVEHD-LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 236
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
MTGWRLG++A P + K Q + + Q A AL + V +M K +
Sbjct: 237 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKAL-KDERSWKAVEEMRKEYD 295
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RR + K E+ G+ +P+GAFY+F S+ +L +A+
Sbjct: 296 RRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDT----------GLTSKKFSELMLKEAR 344
Query: 426 V 426
V
Sbjct: 345 V 345
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 530 bits (1368), Expect = 0.0
Identities = 147/356 (41%), Positives = 208/356 (58%), Gaps = 15/356 (4%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS RV A+KPS TVA+ +A L + GV ++ L AGEPDFDTP + EA A+ +G T+
Sbjct: 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTK 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG ELR A+ K + ENGLS TP++ +V+ G Q++ A+ PGDEVI+ +P
Sbjct: 64 YAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+WVSYPEM R A V + T E F+ DP+ + +T +++ L++ SP+NPTG+VYPK
Sbjct: 124 YWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYPK 183
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+L+ +AR+ +H ++SDEIYEH++Y H S + E TLTVNG +KAFAMT
Sbjct: 184 EVLEALARLAVEHD-FYLVSDEIYEHLLYEGE-HFSPGRVAP--EHTLTVNGAAKAFAMT 239
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY GPK + A + Q T+ +I+Q A + AL A V +A+R R
Sbjct: 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRR 299
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
RD L++ L G+K P GAFY+ +D S + LL+
Sbjct: 300 RDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAP----------DEVRAAERLLEA 344
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} Length = 370 | Back alignment and structure |
|---|
Score = 495 bits (1276), Expect = e-176
Identities = 109/359 (30%), Positives = 169/359 (47%), Gaps = 30/359 (8%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
LS R+ + + + I A L G VI L GEPDF+TP I + GI +++EG T
Sbjct: 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTH 61
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT + G LELR I K++ PD I+++ G+ + A+ ++ GDEV+I P
Sbjct: 62 YTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNP 121
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ Y R A PV + LE L++K++ +I+ SPSNP G V +
Sbjct: 122 CYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSDKTKAIIINSPSNPLGEVIDR 173
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
EI ++ ++SDEIY ++Y S E+T+ +NGFSK +AMT
Sbjct: 174 ----EIYEFAYEN-IPYIISDEIYNGLVYE-GKCYSAIEFDENLEKTILINGFSKLYAMT 227
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY+ + A K+Q A +ISQ A + A ++ M+K F R
Sbjct: 228 GWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKE--TEREINSMIKEFDRR 285
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
R ++K + G +++ P GA+Y+F + E+ LL + V
Sbjct: 286 RRLVLKYVKDF-GWEVNNPIGAYYVFPNIG-------------EDGREFAYKLLKEKFV 330
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 486 bits (1253), Expect = e-172
Identities = 77/371 (20%), Positives = 139/371 (37%), Gaps = 26/371 (7%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSV----IRLAAGEPDFD--TPVLIAEAGINAI 121
P + V + G + + + G+ D TP
Sbjct: 8 FKKLGTDNAPGQEVRQSAAGLEALIRGAPIEGRPVDFSHGDVDAHEPTPGAFDLFSAGVQ 67
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGD 180
G YT G L +R + +L G D ++++ G + ++ AV A + GD
Sbjct: 68 SGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGD 127
Query: 181 EVIIPAPFWVSYPEMARIADATPVILP----TRISENFLLDPKVLESKLTEKSRLLILCS 236
+V I P + + ++ + V + + LD LE +R+ + +
Sbjct: 128 KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSN 187
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTL 295
P+NP G VY + +IA + A++ V++D++Y + YA A++T + + E +
Sbjct: 188 PNNPAGVVYSAEEIGQIAALAARYG-ATVIADQLYSRLRYAGASYTHLRAEAAVDAENVV 246
Query: 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 355
T+ G SK +++G+RLG G + +A K+Q+ + A+ SQ
Sbjct: 247 TIMGPSKTESLSGYRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFD---EAPG 303
Query: 356 VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSES 415
+ + + RD L+ EGV PQ YLF
Sbjct: 304 WMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLP----------KLAVAPAE 353
Query: 416 LCRYLLDKAQV 426
+ L +A V
Sbjct: 354 FVKILRLQAGV 364
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 472 bits (1218), Expect = e-166
Identities = 92/360 (25%), Positives = 167/360 (46%), Gaps = 23/360 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
S RV + S + A + GV + L G+PD TP + E I +
Sbjct: 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFER-IYENKPEVVY 74
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y+ +AG ELR A K + P+ +LV+NG ++IL + + +PGDE+++ P
Sbjct: 75 YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 134
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
F+ +Y A+IA + + R+ E F + P+ LES + E+++ ++L +P NPTG VY K
Sbjct: 135 FYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNPCNPTGVVYGK 193
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+ + + I +H L ++ DE+Y I++ S S+ ++ + ++ SK F+
Sbjct: 194 DEMRYLVEIAERHG-LFLIVDEVYSEIVFR-GEFASALSI--ESDKVVVIDSVSKKFSAC 249
Query: 308 GWRLGY-IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
G R+G I + ++ K+ Q + Q V L + + +RE
Sbjct: 250 GARVGCLITRNEELISHAMKLA-QGRLAPPLLEQIGSVGLLN---LDDSFFDFVRETYRE 305
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
R + ++K E + ++P GAFY+ + +E++E R++L +
Sbjct: 306 RVETVLKKLEEHGLKRFTKPSGAFYITAELP------------VEDAEEFARWMLTDFNM 353
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 459 bits (1184), Expect = e-161
Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 24/369 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREG 124
S R +V+ + + A L + G+ VIRL G+P DF P + EA AI+EG
Sbjct: 12 ASKRALSVEYA-IRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEG 70
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184
Y + G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE+++
Sbjct: 71 HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILV 130
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244
P P + Y + + PV T E++ D + K+T++++ + + +P+NPTG++
Sbjct: 131 PGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGAL 190
Query: 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304
Y K L+EI I ++ + V+SDEIY+ + Y H S SL + +NG SK +
Sbjct: 191 YDKKTLEEILNIAGEY-EIPVISDEIYDLMTYE-GEHISPGSLTKD-VPVIVMNGLSKVY 247
Query: 305 AMTGWRLGYIA--GPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359
TGWRLGY+ P++ ++ + ++ ++ +Q A +A L + + +
Sbjct: 248 FATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYLKE 304
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419
+K +ERRD++ K E+ G+ ++PQGAFY+F +N +
Sbjct: 305 YMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIEVG---------PWKNDKEFVLD 355
Query: 420 LLDKAQVLL 428
+L A VL
Sbjct: 356 VLHNAHVLF 364
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 446 bits (1149), Expect = e-155
Identities = 67/401 (16%), Positives = 115/401 (28%), Gaps = 46/401 (11%)
Query: 60 EEVQVDVSLSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGEPDFDTPVLIAEAGI 118
E++ + + + + + T L +A G R+ G P P + E I
Sbjct: 8 EKLIREKQNELHIKDLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEI 67
Query: 119 NAIREGFT-RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 177
+REG Y G EL+ K + + + G+ Q + L
Sbjct: 68 QKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR 127
Query: 178 ----PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
+ P + RI L K+ T + +I
Sbjct: 128 THKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQTGQFCSII 187
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-----APATHTSFASLP 288
+P+NPT L I + KH ++V+ D Y + + P S+
Sbjct: 188 YSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVA 246
Query: 289 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV------------------AACNKIQSQ 330
+ + SKAF+ G R+G + A +
Sbjct: 247 NYTDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYA 306
Query: 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-----EGVKMSE 385
+SGA+ +Q A L G V + + + K F + +E
Sbjct: 307 LSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDNGFNIVYDKDGNE 366
Query: 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
P + F Y G +S L +
Sbjct: 367 PLADGFYF--TVGYKG---------MDSSKLIEKFVRYGMC 396
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 441 bits (1136), Expect = e-154
Identities = 88/359 (24%), Positives = 147/359 (40%), Gaps = 22/359 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+ +AV P + + + A +AG +I + G+P P EA ++
Sbjct: 4 KNSSRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALG 63
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G LR I E G+ P +++++ G+ L A A+ GD V I AP
Sbjct: 64 YTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ SY ++ R PV LPT P L++ SP+NPTG++
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASPANPTGTMLDH 180
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+ + +SDEIY I Y + + + +N FSK F+MT
Sbjct: 181 AAMGALIEAAQAQ-GASFISDEIYHGIEYEAKAV----TALELTDECYVINSFSKYFSMT 235
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+G++ P+ V +I A SQ A +AAL + + ++
Sbjct: 236 GWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAAL----DCDAELQANLDVYKAN 291
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
R +++ + +++ P GAFY++ D S ++S + +L+KA V
Sbjct: 292 RKLMLERLPKAGFTRIAPPDGAFYVYADVSDL----------TDDSRAFAAEILEKAGV 340
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 427 bits (1101), Expect = e-149
Identities = 82/382 (21%), Positives = 156/382 (40%), Gaps = 47/382 (12%)
Query: 68 LSPRVNAV--KPSKTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIRE 123
++ + + S + + A +V + G P P ++ + + +
Sbjct: 4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTD 63
Query: 124 ----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG 179
YT G +E R+AI L +G + D + ++ GA S+ A+ S
Sbjct: 64 YDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDA 123
Query: 180 -DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
DE I AP++ Y A A V +P E+F +D LE ++ +R +I+ SP+
Sbjct: 124 YDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQIDFDALEERINAHTRGVIINSPN 182
Query: 239 NPTGSVYPKNLLDEIARIVAKHPR-----LLVLSDEIYEHIIYAPATHTSFASLPGMWER 293
NP+G+VY + + +++ ++ K + + +++DE Y I+Y + ++
Sbjct: 183 NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVY---DGIKVPFVTKYYDN 239
Query: 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAA 346
TL +SK+ ++ G R+GY+ P ++ A S+ QK V
Sbjct: 240 TLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKC 299
Query: 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406
G + + A++E RD L + + G +P GAFY+F+
Sbjct: 300 QG--------ATGDINAYKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKAL--------- 341
Query: 407 FGKIENSESLCRYLLDKAQVLL 428
++S + C + VL+
Sbjct: 342 ---EDDSNAFCEKAK-EEDVLI 359
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 422 bits (1087), Expect = e-147
Identities = 67/336 (19%), Positives = 124/336 (36%), Gaps = 26/336 (7%)
Query: 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS 152
AGVS+ L E F E ++ Y G+ + ++
Sbjct: 25 AGVSISSLTLEE-LFALSGTNPEDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----G 78
Query: 153 YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212
P+QIL +NGA + L + ++ PGD VI P + ++ + A +
Sbjct: 79 VKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEEN 138
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
+L D + L + ++++ + + +NPTG+V + L+E+ I ++ +LSDE+Y
Sbjct: 139 GWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYR 197
Query: 273 HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFT 332
+ S+ ++++ + VN SK +++ G R+G++A +
Sbjct: 198 SF-----SELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTM 252
Query: 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392
A AL E++ + E L + E V P
Sbjct: 253 ICAGVFDDLVAQLALA---HYQEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTS 309
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
F+ + E C LL + VLL
Sbjct: 310 FVKIAV-----------DMPMEDFCLQLLQEHGVLL 334
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 414 bits (1066), Expect = e-143
Identities = 85/369 (23%), Positives = 153/369 (41%), Gaps = 22/369 (5%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP----DFDTPVLIAEAGINAIREG-F 125
+ + AI D ++I L+ G+P + T + +A +A+ G +
Sbjct: 30 DMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKY 89
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIP 185
Y P+ G L R I +++++G Q+I + + +PG +++P
Sbjct: 90 NGYAPSIGFLSSREEIASYYHCPE-APLEAKDVILTSGCSQAIDLCLAVLANPGQNILVP 148
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + Y +A + +++ +D K LE + EK+ LI+ +PSNP GSV+
Sbjct: 149 RPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVNNPSNPCGSVF 208
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L +I + A+ + +L+DEIY ++++ + A+L L+ G +K +
Sbjct: 209 SKRHLQKILAVAARQ-CVPILADEIYGDMVFSDCKYEPLATL-STDVPILSCGGLAKRWL 266
Query: 306 MTGWRLGYIAGPKHFVAACNKIQ------SQFTSGASSISQKAGVAALGLGYAGGEVVSK 359
+ GWRLG+I N+I+ SQ G +I Q A + L GE
Sbjct: 267 VPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCRT--PGEFYHN 324
Query: 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRY 419
+ + D + + G++ P GA YL + E F + EN
Sbjct: 325 TLSFLKSNADLCYGALAAIPGLRPVRPSGAMYLMVGIEM------EHFPEFENDVEFTER 378
Query: 420 LLDKAQVLL 428
L+ + V
Sbjct: 379 LVAEQSVHC 387
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 411 bits (1059), Expect = e-142
Identities = 92/384 (23%), Positives = 160/384 (41%), Gaps = 32/384 (8%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
DVS+S V + ++D A +I+L+ G+P D +L + A I ++E
Sbjct: 5 DVSMSNHAGLV-FNPIRTVSDNAKPSPS-PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEA 62
Query: 125 -----FTRYTPNAGTLELRSAICHKL------KEENGLSYTPDQILVSNGAKQSILQAVL 173
Y P G+ E R A+ KEE + D +++ +G IL A+
Sbjct: 63 IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT 122
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
A+C GD ++P P + Y + + R ++ D + +K++LLI
Sbjct: 123 AICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLI 182
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY----APATHTSFASLPG 289
+ +PSNP GS + + +++I R+ + RL + SDEIY +++ AT TS A
Sbjct: 183 VTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFET 241
Query: 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGV 344
+ + G +K + GWRLG++ + ++ G ++ Q A
Sbjct: 242 TV-PRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALG 300
Query: 345 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404
AL E + ++V E +L GE G+ + P+GA YL
Sbjct: 301 EALLNT--PQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDL------ 352
Query: 405 EGFGKIENSESLCRYLLDKAQVLL 428
E + I+ LL++ V +
Sbjct: 353 EKYRDIKTDVEFFEKLLEEENVQV 376
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} Length = 447 | Back alignment and structure |
|---|
Score = 384 bits (987), Expect = e-131
Identities = 85/395 (21%), Positives = 164/395 (41%), Gaps = 19/395 (4%)
Query: 48 RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDF 107
R+ +M+ S + V S V A A G +I L G +
Sbjct: 10 RQFTNLMSTSRPKVVANKYFTSNTAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSY 69
Query: 108 DTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166
P + A+ +Y+P G L +++ + + V+ GA +
Sbjct: 70 SPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANE 129
Query: 167 SILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR----------ISENFLL 216
IL ++ + + GDEVI+ PF+ Y + V +P E + +
Sbjct: 130 GILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTI 189
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
D + E +T K++ +I+ +P NP G V+ + L + I KH ++++SDE+YEH+ +
Sbjct: 190 DFEQFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDEVYEHLYF 248
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGA 335
+ P + + TLTV K+FA TGWR+G+ ++ ++ K ++ +
Sbjct: 249 TDSFTRIATLSPEIGQLTLTVGSAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFAS 308
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
S Q+A ++ KM + + + F EL G+ + P+G +++ +D
Sbjct: 309 PSPLQEACANSINDA-LKIGYFEKMRQEYINKFKIFTSIFDEL-GLPYTAPEGTYFVLVD 366
Query: 396 FSTYYGSEAEGFGKIENSES----LCRYLLDKAQV 426
FS E + + ++ + +L+++ V
Sbjct: 367 FSKVKIPEDYPYPEEILNKGKDFRISHWLINELGV 401
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} Length = 411 | Back alignment and structure |
|---|
Score = 371 bits (954), Expect = e-126
Identities = 111/359 (30%), Positives = 173/359 (48%), Gaps = 18/359 (5%)
Query: 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT 129
V+ ++P T + +ALA + + L G PD D P + +A +AI G +Y
Sbjct: 2 ATVSRLRPYATTVFAE-MSALATR-IGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYP 59
Query: 130 PNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPF 188
P G+ LR AI + + G+ Y P+ ++LV+ GA ++I AVL + PG EV++ PF
Sbjct: 60 PGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPF 119
Query: 189 WVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
+ SY + +A A V +P F LD L +T ++R LI+ SP NPTG+V
Sbjct: 120 YDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPHNPTGAVLSA 179
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
L IA I L+V++DE+YEH+++ A H A GM ERT+T++ +K F T
Sbjct: 180 TELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCT 238
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GW++G+ GP +A + + + Q A AL V+ + + R R
Sbjct: 239 GWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRAR 295
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RD L E+ G + + G ++L D G ++S C L +K V
Sbjct: 296 RDRLAAGLTEI-GFAVHDSYGTYFLCADPR--------PLG-YDDSTEFCAALPEKVGV 344
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 Length = 386 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-125
Identities = 100/364 (27%), Positives = 173/364 (47%), Gaps = 22/364 (6%)
Query: 67 SLSPRVNAVK--PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
+ +P + K T T +ALAQ I L+ G PDFD P + E + + +G
Sbjct: 2 TNNPLIPQSKLPQLGTTIFTQ-MSALAQQ-HQAINLSQGFPDFDGPRYLQERLAHHVAQG 59
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVI 183
+Y P G LR AI K + G D I V+ GA +++ A+ A+ GDEVI
Sbjct: 60 ANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVI 119
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGS 243
P + SY ++ + + +F +D + + L+E++RL+IL +P NP+ +
Sbjct: 120 CFDPSYDSYAPAIALSGGIVKRMALQ-PPHFRVDWQEFAALLSERTRLVILNTPHNPSAT 178
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303
V+ + + + +A H + V+SDE+YEHI ++ H S + P + ER + V+ F K
Sbjct: 179 VWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKT 237
Query: 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVK 362
+ MTGW++GY P A K+ Q+ + ++ +Q A L A E +
Sbjct: 238 YHMTGWKVGYCVAPAPISAEIRKVH-QYLTFSVNTPAQLALADMLR---AEPEHYLALPD 293
Query: 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 422
+R++RD LV + E +++ +G ++L +D+S + C++L
Sbjct: 294 FYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAV---------STLDDVEFCQWLTQ 343
Query: 423 KAQV 426
+ V
Sbjct: 344 EHGV 347
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 363 bits (934), Expect = e-122
Identities = 65/385 (16%), Positives = 122/385 (31%), Gaps = 64/385 (16%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK-LKEENGLSYTP 155
+ + D + E + Y L + I + + E G P
Sbjct: 106 SLSYVRDQLGLDPAAFLHEMVDGILGCN---YPVPPRMLNISEKIVRQYIIREMGADAIP 162
Query: 156 DQ---ILVSNGAKQSILQ-----AVLAVCSPGDEVIIPAPFWVSYPEMARIADAT--PVI 205
+ + G ++ + + GD+V I P + Y E+ +A V
Sbjct: 163 SESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVA 222
Query: 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRLL 264
+ S N+ L+ ++ +PSNP + L+ + IVA+H P L+
Sbjct: 223 INADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLM 282
Query: 265 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324
+L+D++Y S ++ E TL V FSK F TGWRLG +A + V
Sbjct: 283 ILTDDVYGTFAD---DFQSLFAI--CPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDL 337
Query: 325 NKIQSQFTSGASSISQKAGVA--------------------------------------A 346
+ Q + + + + +
Sbjct: 338 ALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFS 397
Query: 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS----TYYGS 402
L + +K RR+ + + ++ E +Y ID YG
Sbjct: 398 LFALMDEADEYKHTLKQLIRRRETTLYRELGMPPLR-DENAVDYYTLIDLQDVTAKLYGE 456
Query: 403 EAEGFG-KIENSESLCRYLLDKAQV 426
+ K ++ + + D+ +
Sbjct: 457 AFSEWAVKQSSTGDMLFRIADETGI 481
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 358 bits (920), Expect = e-120
Identities = 72/421 (17%), Positives = 139/421 (33%), Gaps = 68/421 (16%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
++ + ++ + + + + E + ++AE A+
Sbjct: 73 IMAGYINTDGIRERLFAFLDPDKNDEDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANN 132
Query: 125 FTRYTPNAGTLELRSAICHKLKEE---NGLSYTPDQILVSNGAKQSILQAVLAVCS---- 177
+ P+ + I + L+E + + + G +I+ A ++
Sbjct: 133 Y--PVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLL 190
Query: 178 -PGDEVIIPAPFWVSYPEMARIADATPVI--LPTRISENFLLDPKVLESKLTEKSRLLIL 234
GD++ I P + Y + + D V L + ++ ++P +E + LI+
Sbjct: 191 KKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIV 250
Query: 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294
+P+NPT + N L+ I + V K+P+L+++SDE+Y + S S+ + T
Sbjct: 251 VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVP---NFKSIYSV--VPYNT 305
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFV-------------AACNKIQSQFTSGASSISQK 341
+ V +SK F TGWRLG IA + V +K S +
Sbjct: 306 MLVYSYSKLFGCTGWRLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFI 365
Query: 342 AGVAA-------------------------------LGLGYAGGEVVSKMVKAFRERRDF 370
+ A G + + K ER D
Sbjct: 366 DRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQ 425
Query: 371 LVKSFGELEGVKMSEPQGAFYLFIDFS----TYYGSE-AEGFGKIENSESLCRYLLDKAQ 425
L + + ++ +Y ID YG E + L +K
Sbjct: 426 LHDAMQ-APKDE-TDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNG 483
Query: 426 V 426
V
Sbjct: 484 V 484
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Length = 381 | Back alignment and structure |
|---|
Score = 350 bits (900), Expect = e-119
Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 19/332 (5%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
L PR A K S I + + LAQ + + L G P P + EA A+
Sbjct: 2 RLHPRTEAAKES----IFPRMSGLAQR-LGAVNLGQGFPSNPPPPFLLEAVRRAL-GRQD 55
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
+Y P AG LR A+ + + P+ ++V++GA +++ + ++ PGDEV++
Sbjct: 56 QYAPPAGLPALREALAEEF------AVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLE 109
Query: 187 PFWVSYPEMARIADATPVILPTRISEN-FLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
PF+ Y A +A A ++ ++ F LD LE LT ++R L+L +P NPTG V+
Sbjct: 110 PFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVF 169
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
+ L+ IAR+ H L ++SDE+Y+ + Y ERT TV K
Sbjct: 170 GERELEAIARLARAH-DLFLISDEVYDELYYGERPRRL---REFAPERTFTVGSAGKRLE 225
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
TG+R+G+I GPK F+ ++ + A + Q AL L + + +R
Sbjct: 226 ATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLA-RREGFYEALREGYR 284
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397
RRD L + G+++ P+G ++L +
Sbjct: 285 RRRDLLAGGLRAM-GLRVYVPEGTYFLMAELP 315
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A* Length = 410 | Back alignment and structure |
|---|
Score = 348 bits (896), Expect = e-118
Identities = 108/373 (28%), Positives = 173/373 (46%), Gaps = 22/373 (5%)
Query: 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINA-IREGFTR 127
+ R+ + + V T A A SV+ L G PD P + E A + +
Sbjct: 2 AKRIEGLDSNVWVEFTKLA-----ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ 56
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
YT G L A+ + P+ +ILV+ GA S+ ++ + PGDEVII
Sbjct: 57 YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMV 116
Query: 187 PFWVSYPEMARIADATPVILPTR---------ISENFLLDPKVLESKLTEKSRLLILCSP 237
PF+ Y M R+A A PV +P R S ++ DP+ LESK + K++ +IL +P
Sbjct: 117 PFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSSKTKAIILNTP 176
Query: 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297
NP G VY + L IA + KH L +SDE+YE ++Y TH A+LPGMWERT+T+
Sbjct: 177 HNPLGKVYTRQELQVIADLCVKHD-TLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235
Query: 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV- 356
K F++TGW+LG+ GP H + +Q ++ Q A A + +
Sbjct: 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDP 295
Query: 357 ---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413
+ + K +RD +V+ + G+K P G +++ D S+ ++
Sbjct: 296 ECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYD 354
Query: 414 ESLCRYLLDKAQV 426
+++ ++
Sbjct: 355 YKFVKWMTKHKKL 367
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* Length = 422 | Back alignment and structure |
|---|
Score = 343 bits (881), Expect = e-115
Identities = 101/379 (26%), Positives = 171/379 (45%), Gaps = 28/379 (7%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+ R++ + + + LA V+ L G PDF P EA +A+ F
Sbjct: 6 QARRLDGIDYN----PWVEFVKLASE-HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFML 60
Query: 128 --YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
YT G L + E G P +LV+ G ++ A A+ GDEVII
Sbjct: 61 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 120
Query: 185 PAPFWVSYPEMARIADATPVILPTR----------ISENFLLDPKVLESKLTEKSRLLIL 234
PF+ Y M +A PV + + S N+ LDP L K T +++ L+L
Sbjct: 121 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVL 180
Query: 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294
+P+NP G V+ + L+ +A + +H ++ ++DE+Y+ ++Y H S ASLPGMWERT
Sbjct: 181 NTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERT 239
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYA- 352
LT+ K F+ TGW++G++ GP H + + Q + + SQ A +
Sbjct: 240 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVH-QNSVFHCPTQSQAAVAESFEREQLL 298
Query: 353 ---GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409
+ +A + RD +++S + G+K PQG+++L D S + + G
Sbjct: 299 FRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGA 357
Query: 410 I--ENSESLCRYLLDKAQV 426
+ ++++ +
Sbjct: 358 VDEPYDRRFVKWMIKNKGL 376
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 340 bits (874), Expect = e-114
Identities = 64/361 (17%), Positives = 131/361 (36%), Gaps = 37/361 (10%)
Query: 97 VIRLAAGEP----DFDTP-------VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
+I++ E D + +I + G + A+ +
Sbjct: 40 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFM 99
Query: 146 KE--ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIA-DAT 202
E N +++ P+ ++++ GA + + + PG+ V+IP P++ + +
Sbjct: 100 AEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVE 159
Query: 203 PVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARI 256
V + S F + LE E + + +++ +PSNP G+ +N L +
Sbjct: 160 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 219
Query: 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASL---------PGMWERTLTVNGFSKAFAMT 307
V + ++SDEIY ++ + S + +W+R V SK +
Sbjct: 220 VEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLP 278
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
G+R+G I V A S F SS +Q A L +++ K ++R
Sbjct: 279 GFRVGAIYSNDDMVVAAATKMSSFGL-VSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQR 337
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427
+ LV + G+ + ++D S E L + ++ + +
Sbjct: 338 QKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSN-----TFEAEMELWKKIVYEVHLN 391
Query: 428 L 428
+
Sbjct: 392 I 392
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* Length = 429 | Back alignment and structure |
|---|
Score = 340 bits (873), Expect = e-114
Identities = 91/390 (23%), Positives = 165/390 (42%), Gaps = 24/390 (6%)
Query: 54 MACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI 113
M+ + E + L R S + + LA + L G PD+ P
Sbjct: 1 MSSTSNETMHNKFDLPKRYQGSTKS----VWVEYIQLAAQ-YKPLNLGQGFPDYHAPKYA 55
Query: 114 AEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSIL 169
A A +YT G L A+ + + P ++LV+ GA +++
Sbjct: 56 LNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY 115
Query: 170 QAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP--------TRISENFLLDPKVL 221
+ GDEVII PF+ Y M + A P +P T S +++LD L
Sbjct: 116 ATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNEL 175
Query: 222 ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATH 281
E+ EK++++I+ +P NP G V + L+ +A + K +L +SDE+YEH+++ P H
Sbjct: 176 EALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEH 234
Query: 282 TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQK 341
+LPGMWERT+T+ K F++TGW++G+ GP+ + + ++ Q+
Sbjct: 235 IRICTLPGMWERTITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQE 294
Query: 342 AGVAALGLGY----AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397
A + + + +RD++ E+ G+ + PQG +++ D+S
Sbjct: 295 AIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWS 353
Query: 398 TY-YGSEAEGFGKIENSESLCRYLLDKAQV 426
+ + +++ +
Sbjct: 354 SLDSKVDLTQETDARKDYRFTKWMTKSVGL 383
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} Length = 412 | Back alignment and structure |
|---|
Score = 339 bits (871), Expect = e-114
Identities = 89/360 (24%), Positives = 160/360 (44%), Gaps = 15/360 (4%)
Query: 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R 127
R++ + P + A + G +I L+ G PD TP I E + T
Sbjct: 11 FARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHG 70
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
Y+ + G LR AI H ++ + P+ + +V+ G+K+ + +LA GD +++P
Sbjct: 71 YSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPN 130
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P + + A IA A +P +F + + + K R++IL PSNPT
Sbjct: 131 PSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGFPSNPTAQCVE 190
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+ + + + ++ ++V+ D Y I+Y S +PG + + SK++ M
Sbjct: 191 LDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNM 249
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
GWR+G++ G V+A +I+S G + Q A +AAL + V + + +++
Sbjct: 250 AGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQ---QCVRDIARQYQQ 306
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD LVK E G + P+ + Y++ E + + S + LL A+V
Sbjct: 307 RRDVLVKGLREA-GWMVENPKASMYVWAKIP-------EPYAHL-GSLEFAKKLLQDAKV 357
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-112
Identities = 63/359 (17%), Positives = 129/359 (35%), Gaps = 36/359 (10%)
Query: 97 VIRLAAGEP----DFDTPVLIAEAGINAIREG------FTRYTPNAGTLELRSAICHKLK 146
VI++ E D + + EG + G E R AI ++
Sbjct: 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFME 97
Query: 147 EENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIAD-ATP 203
+ G + + P++++++ GA + + + PGD ++P+P++ ++ R
Sbjct: 98 KTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQL 157
Query: 204 VILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
+ + S NF + K ++ K + LIL +PSNP G+ K+ L +
Sbjct: 158 IPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFT 217
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTGWR 310
+H + ++ DEIY ++ S A + + V SK + G+R
Sbjct: 218 NQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFR 276
Query: 311 LGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369
+G I V K+ S + A A L + + +R
Sbjct: 277 VGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLA--AMLSDEKFVDNFLRESAMRLGKRHK 334
Query: 370 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+ G+K + + ++D ++ SL R +++ ++ +
Sbjct: 335 HFTNGLEVV-GIKCLKNNAGLFCWMDLRPLLRES-----TFDSEMSLWRVIINDVKLNV 387
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} Length = 404 | Back alignment and structure |
|---|
Score = 328 bits (844), Expect = e-110
Identities = 75/361 (20%), Positives = 148/361 (40%), Gaps = 22/361 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT- 126
+S ++ + S + + + +I +A G PD TP I + A+
Sbjct: 22 ISNKLANIPDSYFGKTMGRK--IEHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQ 79
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 185
+Y G + AI + + ++ + ++ + G K ++ V +PGD V++P
Sbjct: 80 KYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLP 139
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P + Y +AD PV L ++L D ++S++ +K++L+ L P+NPTGS
Sbjct: 140 DPGYTDYLAGVLLADGKPVPLNLE-PPHYLPDWSKVDSQIIDKTKLIYLTYPNNPTGSTA 198
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K + DE ++ D Y + A + S + + + + SK +
Sbjct: 199 TKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFD-AKNPSILASENGKDVAIEIYSLSKGYN 256
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
M+G+R+G+ G K + A K Q+ +G Q A + AL + + + F+
Sbjct: 257 MSGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNH---YDDFLEEQSNVFK 313
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RRD + + +G Y++++ Y SE ++L+ +
Sbjct: 314 TRRDRFEAMLAKA-DLPFVHAKGGIYVWLETPPGYD-----------SEQFEQFLVQEKS 361
Query: 426 V 426
+
Sbjct: 362 I 362
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} Length = 376 | Back alignment and structure |
|---|
Score = 311 bits (798), Expect = e-103
Identities = 76/338 (22%), Positives = 141/338 (41%), Gaps = 22/338 (6%)
Query: 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-RYTPNAGTLELRSAICHKLKE 147
+ GV +I L+ G D P +A A+ + T Y + TL +
Sbjct: 19 KARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEG 78
Query: 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
G+ P + L G+++ + +LA+ P D +++P + SY AR+A ++
Sbjct: 79 RYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLI 138
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
P R E+ L D K + + ++++L+L P+NPTG+V +E + KH L ++
Sbjct: 139 PLR--EDGLADLKAVPEGVWREAKVLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLI 195
Query: 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326
D Y +Y S +LPG ER + + SK++ + G+RLG+ G + +A +
Sbjct: 196 HDNPYVDQVYE-GEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEALARLER 254
Query: 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386
++ + + GV AL EVV + +RER + ++ + + P
Sbjct: 255 VKGVIDFNQYAGVLRMGVEALKTPK---EVVRGYARVYRERALGMAEALK--GVLSLLPP 309
Query: 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424
+ YL+ L+++
Sbjct: 310 RATMYLWGRLPEGVD-----------DLEFGLRLVERG 336
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 295 bits (758), Expect = 8e-97
Identities = 59/387 (15%), Positives = 132/387 (34%), Gaps = 46/387 (11%)
Query: 68 LSPRVNAVK-PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLI---AEAGINAI-R 122
LS + P ++ + A+A + G + +A N +
Sbjct: 25 LSDLGQNMFYPKGILSQS------AEAKSTTYNATIGMATNKDGKMFASSLDAMFNDLTP 78
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEEN-GLSYTP-DQILVSNGAKQSILQAVLAVCSPGD 180
+ Y P G ELR K+ +N LS + +V+N + + D
Sbjct: 79 DEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDD 138
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK---SRLLILCSP 237
+++P W +Y + + + ++ L L ++IL P
Sbjct: 139 TILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYP 198
Query: 238 SNPTGSVYPKNLLDEIARIV----AKHPRLLVLSDEIYEHIIY----APATHTSFASLPG 289
+NPTG + I + K +++ + D+ Y + Y + T+ +L
Sbjct: 199 NNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHS 258
Query: 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF-------TSGASSISQKA 342
+ ++G +K F G+R+G++ ++++ S +Q A
Sbjct: 259 NAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSA 318
Query: 343 GVAALGLGYAGGEVVSKMVKAFRERRDF---LVKSFGELEGVKMSEPQGAFYLFIDFSTY 399
L + + + ++ +ER + +V + + + +++ I
Sbjct: 319 VKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQAYDFNSGYFMAIKVHD- 377
Query: 400 YGSEAEGFGKIENSESLCRYLLDKAQV 426
+ E+L ++L+DK +
Sbjct: 378 -----------VDPEALRKHLIDKYSI 393
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* Length = 400 | Back alignment and structure |
|---|
Score = 291 bits (747), Expect = 2e-95
Identities = 86/351 (24%), Positives = 137/351 (39%), Gaps = 40/351 (11%)
Query: 90 LAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSAICHK 144
L +VI L+ G+ +AEA ++I Y P+ G LR +
Sbjct: 28 LENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSED 87
Query: 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 204
+I +S+GAK + +L+ P V I P + +Y ++AR+ A +
Sbjct: 88 FYRGF---VDAKEIFISDGAKVDLF-RLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEI 143
Query: 205 I-LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263
I LP F + +L LCSP+NPTG+V K+ L I +H +
Sbjct: 144 IALPCLQENAFFPEFPE-----DTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EI 197
Query: 264 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323
L+L D Y I P+ S +P + +N FSK G RLG+ P+ A
Sbjct: 198 LILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTYA 257
Query: 324 C--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375
+ S +GAS +Q+AGVA L + + +RE D L K+
Sbjct: 258 DGHFVIQDWERFLSTTFNGASIPAQEAGVAGL-----SILPQLEAIHYYRENSDLLRKAL 312
Query: 376 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
G ++ + A YL++ + S L + L + +
Sbjct: 313 LAT-GFEVFGGEHAPYLWVKPTQANIS----------DRDLFDFFLREYHI 352
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* Length = 432 | Back alignment and structure |
|---|
Score = 284 bits (730), Expect = 2e-92
Identities = 86/414 (20%), Positives = 150/414 (36%), Gaps = 57/414 (13%)
Query: 43 LNKSDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPS---KTVAITDQATALAQAGVSVIR 99
+ K V E + VS + ++ ++ +A A L VI
Sbjct: 1 MAKRVNTCKCVATPQEKIEYKTKVSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVIS 60
Query: 100 LAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELRSAICHKLKEENGLSYT 154
L G+ P +I A E G++ Y G LR+AI G+
Sbjct: 61 LGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGD- 119
Query: 155 PDQILVSNGAKQSI--LQAVLAVCSPGDEVIIPAPFWVSYPEMARIA------------D 200
D + VS+GAK I LQ + + + P + +Y + + I
Sbjct: 120 -DDVFVSDGAKCDISRLQVMF---GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKY 175
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ F D ++ ++ CSP+NPTG+ + L ++ K+
Sbjct: 176 GNIEYMRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN 230
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
+++ D Y + S +PG E + FS TG RLG+ PK
Sbjct: 231 -GSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKL 288
Query: 321 VAAC--------NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372
+ + N+I +GAS+ISQ +A L G E + K++ ++E + ++
Sbjct: 289 LYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTP--EGLEAMHKVIGFYKENTNIII 346
Query: 373 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+F L G + + A Y+++ F S + +L+K V
Sbjct: 347 DTFTSL-GYDVYGGKNAPYVWVHFPNQS------------SWDVFAEILEKTHV 387
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 284 bits (729), Expect = 1e-91
Identities = 72/378 (19%), Positives = 134/378 (35%), Gaps = 31/378 (8%)
Query: 79 KTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT--RYTPNAGTLE 136
+ V + AL +++ + F + I A+ G Y+ + G
Sbjct: 80 QPVTFFREVLALCDHP-DLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIHG 138
Query: 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-PGDEVIIPAPFWVSYPEM 195
LR AI + +G D I +++GA + + + D +++P P + Y
Sbjct: 139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS 198
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNL 249
+ V S + L+ ++ +L + R L++ +P NPTG V +
Sbjct: 199 IALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEEN 258
Query: 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASL---PGMWERTL---TVNGFSK 302
+I + L++L+DE+Y+ IY SF + G E L + SK
Sbjct: 259 QYDIVKFCKNE-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSK 317
Query: 303 A-FAMTGWRLGYIAGPKHFVAACNKIQSQFTSG--ASSISQKAGVAALGLGYAGGE---- 355
+ G R GY +I + ++ Q + A E
Sbjct: 318 GYYGECGKRGGYFEITGFSAPVREQIYKIASVNLCSNITGQILASLVMNPPKASDESYAS 377
Query: 356 ---VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKI 410
++ + R L +F +LEG+ +E +GA Y+F I A+
Sbjct: 378 YKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQKAIEAAKAAN-K 436
Query: 411 ENSESLCRYLLDKAQVLL 428
LL+ +++
Sbjct: 437 APDAFYALRLLESTGIVV 454
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} Length = 498 | Back alignment and structure |
|---|
Score = 271 bits (695), Expect = 1e-86
Identities = 67/361 (18%), Positives = 126/361 (34%), Gaps = 38/361 (10%)
Query: 102 AGEPDFDTPVLIAEAGI--NAIREGFTRYTPNAGTLELRSAICHKLKE-ENGLSYTPDQI 158
P F I Y+ + G +R + + + G+ PD I
Sbjct: 97 LDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNI 156
Query: 159 LVSNGAKQSILQAVLAVCSPGDE----VIIPAPFWVSYPEMARIADATPVILPTRISENF 214
++ GA I + + S G + V+IP P + Y + DA V +
Sbjct: 157 YLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCW 216
Query: 215 LLDPKVLESKLTEKS-----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
L+ L + E ++L + +P NPTG V + ++++ + +L +L+DE
Sbjct: 217 ALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE-KLFLLADE 275
Query: 270 IYEHIIYAP-ATHTSFASL-----PGMWERTLTV--NGFSKAF-AMTGWRLGYIA---GP 317
+Y+ +Y+P SF + P + SK + G+R GY+
Sbjct: 276 VYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLH 335
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE--------VVSKMVKAFRERRD 369
K+ S +S +A + + GE ++ ++
Sbjct: 336 PEIKGQLVKLLSVRLC--PPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAK 393
Query: 370 FLVKSFGELEGVKMSEPQGAFYLF--IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427
F ++ G+ + QGA Y F I A+ + C LL++ +
Sbjct: 394 LTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQ-MAPDMFYCMKLLEETGIC 452
Query: 428 L 428
+
Sbjct: 453 V 453
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* Length = 427 | Back alignment and structure |
|---|
Score = 266 bits (681), Expect = 2e-85
Identities = 51/358 (14%), Positives = 106/358 (29%), Gaps = 52/358 (14%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTL----ELRSAICHKLKEE 148
+A+G+ F +A+ Y N + EL I +
Sbjct: 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV 116
Query: 149 NGLSYTPDQILVSNGAKQSILQAVLAVCS--------PGDEVIIPAPFWVSYPEMARIAD 200
+ I+ G Q I V+++ P +V+ APF+ + E + D
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ + + + + ++ SP+NP G + H
Sbjct: 177 KKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLR--------------H 214
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 319
++ IY+ + Y P + + + + + SK +G R G+ + +
Sbjct: 215 A-VIKGCKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269
Query: 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERRDFL 371
++ T G +Q + L A ++ + K RER +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329
Query: 372 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVLL 428
+ + E + Y S + + K E + C ++
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINT 387
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} Length = 449 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 2e-84
Identities = 85/405 (20%), Positives = 152/405 (37%), Gaps = 50/405 (12%)
Query: 48 RRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQA---GVSVIRLAAGE 104
RR+ V+ +DV + ++ + Q +I L G+
Sbjct: 19 RRMTAVVQAVAQRAGTIDVQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGD 78
Query: 105 PDFDTPVLIAEAGINAI-----REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL 159
P IA+A A REG++ Y G LR A+ G + D+I
Sbjct: 79 TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRA--ADEIF 136
Query: 160 VSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP----------VILPTR 209
+S+G+K I + + V + P + Y + + + T +
Sbjct: 137 ISDGSKCDIA-RIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCN 195
Query: 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269
+F D +++ ++ CSP+NPTG+ + L E+ K+ +++ D
Sbjct: 196 PDNHFFPDLSK-----AKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN-GSILVYDA 249
Query: 270 IYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC----- 324
Y I P + +PG E + FSK TG RLG+ PK A
Sbjct: 250 AYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVH 309
Query: 325 ---NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
N++ + +GAS+I Q G+A L G + ++ M+K ++E L +F E+ G
Sbjct: 310 ADWNRVMTTCFNGASNIVQAGGLACLQP--EGLKEMNAMIKFYKENAQILKTTFTEM-GF 366
Query: 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
+ A Y+++ F S + +L++ +
Sbjct: 367 SVYGGDDAPYIWVGFPGKP------------SWDVFAEILERCNI 399
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 1e-77
Identities = 49/392 (12%), Positives = 112/392 (28%), Gaps = 59/392 (15%)
Query: 76 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL--------------IAEAGINAI 121
+P+ + D ++ V L G P V ++
Sbjct: 13 QPTGISQLMDDLGDALKSDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSA 72
Query: 122 REGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC----- 176
Y+ G A+ + T + I ++NG++ +
Sbjct: 73 IISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVN 132
Query: 177 ----------SPGDEVIIPAPFWVSYPEMARIADA----TPVILPTRISEN-----FLLD 217
++ P ++ Y ++ P I + +D
Sbjct: 133 EHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVD 192
Query: 218 PKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274
+ LE+ + + P+NPTG+V + +A I ++ + ++ D Y
Sbjct: 193 FEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-DIPLIIDNAYGMP 251
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+ T+ SK + G R G I + A + + +
Sbjct: 252 FPNIIYS---DAHLNWDNNTILCFSLSK-IGLPGMRTGIIVADAKVIEAVSAMNAVVNLA 307
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL---EGVKMSEPQGAFY 391
+ + +++ ++++ VK + + + +P+GA +
Sbjct: 308 PTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIF 367
Query: 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
L++ F ++ L L K
Sbjct: 368 LWLWFK----------DLPISTLDLYERLKAK 389
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Length = 417 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 1e-75
Identities = 48/319 (15%), Positives = 99/319 (31%), Gaps = 24/319 (7%)
Query: 97 VIRLAAGEPDFDTPVL--IAEAGINAIREG-----FTRYTPNAGTLELRSAICHKLKEEN 149
I L G P + + + G Y G L +A+ L+E
Sbjct: 33 AIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETL 92
Query: 150 GLSYTPDQILVSNGAKQSI---LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVIL 206
G P I ++NG++ + + G + P Y A + +
Sbjct: 93 GWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFV 152
Query: 207 PTRI------SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
R F + E++ ++ + P+NPTG+V L ++ R+ +H
Sbjct: 153 SARPNIELLPEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQH 212
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320
+ ++ D Y F+ +W + + + G R G I
Sbjct: 213 -NIPLVIDNAYGVPFP----GIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKT 267
Query: 321 VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL-- 378
+ A + + + + + + + +R +
Sbjct: 268 ITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLS 327
Query: 379 -EGVKMSEPQGAFYLFIDF 396
E + +P+GA +L++ F
Sbjct: 328 EERCLIHKPEGAIFLWLWF 346
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} Length = 376 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 8e-71
Identities = 67/353 (18%), Positives = 123/353 (34%), Gaps = 36/353 (10%)
Query: 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 141
+ L GEP F+TP I +A N Y +A LR+A
Sbjct: 10 ERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQ 68
Query: 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIA 199
K + ++++ + G+++ + V + P PF+ Y A+
Sbjct: 69 RGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFI 128
Query: 200 DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259
A +++P +F L K ++ L+IL SP+NPTG L ++ K
Sbjct: 129 KAKSLLMPLTKENDFTPS---LNEKELQEVDLVILNSPNNPTGRTLSLEELISWVKLALK 185
Query: 260 HPRLLVLSDEIYEHIIYAPATHTSF-----ASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314
H ++++DE Y I Y S + ++ L ++ SK + G R G+I
Sbjct: 186 H-DFILINDECYSEI-YENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFI 243
Query: 315 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374
AG + ++ +++ QKA AA + K
Sbjct: 244 AGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWL----DDRHAEFFRNIYANNLKLARKI 299
Query: 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427
F +FY+++ ++N E+ + L ++
Sbjct: 300 FKNTLI-----YPYSFYVYL--------------PVQNGENFAKTLYQNEGII 333
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} Length = 396 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 5e-58
Identities = 81/377 (21%), Positives = 159/377 (42%), Gaps = 41/377 (10%)
Query: 67 SLSPRVNAVKP---SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE 123
++ + +KP ++ +A G+ + L GEP TP +I +A ++
Sbjct: 1 GMNTLLKQLKPYPFARLHEAMQGISA--PEGMEAVPLHIGEPKHPTPKVITDALTASL-H 57
Query: 124 GFTRYTPNAGTLELRSAICHKLKEE-NGLSYTPD-QILVSNGAKQSILQAVLAVCSP--- 178
+Y AG ELR A + LK +GL+ D +IL G+++++ V V +P
Sbjct: 58 ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSD 117
Query: 179 --GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236
++ P PF+ Y + + +F D + + ++ ++++L+ +CS
Sbjct: 118 GIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSISEEVWKRTKLVFVCS 176
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF----ASLPGMWE 292
P+NP+GSV + E+ + K+ ++ SDE Y I + A L +
Sbjct: 177 PNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQ 235
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
+ L SK + G R G++AG + ++ S S Q+A +AA
Sbjct: 236 KLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWD---- 291
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412
+ V + ++E+ + ++ ++ VK+ P +FY+++ K+ +
Sbjct: 292 DEQHVIDNRRLYQEKFERVIPILQQVFDVKL--PDASFYIWL--------------KVPD 335
Query: 413 SESL--CRYLLDKAQVL 427
+ L R L KA +
Sbjct: 336 GDDLAFARNLWQKAAIQ 352
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* Length = 391 | Back alignment and structure |
|---|
Score = 180 bits (457), Expect = 1e-52
Identities = 60/373 (16%), Positives = 111/373 (29%), Gaps = 50/373 (13%)
Query: 72 VNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRY 128
V K I+++ ++ V+ L G+P + Y
Sbjct: 2 VKLENSRKPEKISNKNIPMSD---FVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSY 58
Query: 129 TPNAGTL------ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE- 181
+ L EL AI + I+V G+ Q AV A+ S
Sbjct: 59 FSDMTNLCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQ 118
Query: 182 ---VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238
V+ APF+ +Y E + + D + + + ++ SP+
Sbjct: 119 PVSVVAAAPFYSTYVEETTYVRSGMY--------KWEGDAWGFD---KKGPYIELVTSPN 167
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298
NP G + + + V+ D Y Y P + + + + +
Sbjct: 168 NPDG-----TIRETVVNR-PDDDEAKVIHDFAY----YWP----HYTPITRRQDHDIMLF 213
Query: 299 GFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357
FSK G R+G+ + K + + G S SQ L + +
Sbjct: 214 TFSKITGHAGSRIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSE 273
Query: 358 SKMVKAF-------RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410
S+ F + R + L + E + + + AF + + A +
Sbjct: 274 SESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGK-SLESYPAFAWLGT 332
Query: 411 ENSESLCRYLLDK 423
+ L L
Sbjct: 333 KEETDLVSELRRH 345
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Length = 369 | Back alignment and structure |
|---|
Score = 156 bits (398), Expect = 3e-44
Identities = 69/303 (22%), Positives = 123/303 (40%), Gaps = 25/303 (8%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSY 153
IRL E + + + + + RY P +ELR + + ++ G++
Sbjct: 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRY-PERDAVELRDELAAYITKQTGVAV 90
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213
T D + +NG+ + + Q + A PG + P + +P +A+ + + +
Sbjct: 91 TRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--AD 148
Query: 214 FLLD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
F +D LE ++ ++ + +P+NPTG V LD++ RI+ P ++++ DE Y
Sbjct: 149 FRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS---LDDVERIINVAPGIVIV-DEAYA 204
Query: 273 HIIYAPATHTSFASLPGMW--ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330
+P+ T P RT SKAF G RLGY F+ A ++
Sbjct: 205 EFSPSPSATTLLEKYPTKLVVSRT-----MSKAFDFAGGRLGYFVANPAFIDAVMLVRLP 259
Query: 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390
+ S++SQ A + AL V+ R + EL G + + F
Sbjct: 260 Y--HLSALSQAAAIVAL----RHSADTLGTVEKLSVERVRVAARLEEL-GYAVVPSESNF 312
Query: 391 YLF 393
F
Sbjct: 313 VFF 315
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Length = 377 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-43
Identities = 70/329 (21%), Positives = 129/329 (39%), Gaps = 31/329 (9%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF T + +A +A++ Y P+ L A + G P+ I
Sbjct: 34 DFSTCPAVLQAITDAVQREAFGYQPDGS--LLSQATAEFYADRYGYQARPEWIFPIPDVV 91
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT--PVILPTRISENFLLDPKVLES 223
+ + A+ +VI+P P +YP + AT I I ++ +E
Sbjct: 92 RGLYIAIDHFTPAQSKVIVPTP---AYPPFFHLLSATQREGIF---IDATGGINLHDVEK 145
Query: 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS 283
+R ++LC+P NP G V+ L+E+ + ++ VL DEI+ +++ HT
Sbjct: 146 GFQAGARSILLCNPYNPLGMVFAPEWLNELCDLAHRY-DARVLVDEIHAPLVF-DGQHTV 203
Query: 284 FASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSGASSISQK 341
A + +T+ SKA+ + G + I ++ GAS++
Sbjct: 204 AAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLI 263
Query: 342 AGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTY 399
A AA Y G +++ V + DFL+ + + G K++ Q + ++IDF
Sbjct: 264 AAEAA----YRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDT 319
Query: 400 YGSEAEGFGKIENSESLCRYLLDKAQVLL 428
S + ++KA+V +
Sbjct: 320 -----------TIEGSPSEFFIEKAKVAM 337
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} Length = 407 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 5e-42
Identities = 79/341 (23%), Positives = 140/341 (41%), Gaps = 18/341 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
L+ R N +K S + +A+ L + GV +I LAAG+PD + P ++ E + +
Sbjct: 7 LAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEP 66
Query: 126 T--RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183
YTP G ELR + LK+ + L +P+ I+++ G ++ + PGD VI
Sbjct: 67 KSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVI 126
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-----LILCSPS 238
P +++ A +P +N + +LE K+ E LI P+
Sbjct: 127 TENPSYINTLLAFEQLGAKIEGVPV---DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPT 183
Query: 239 --NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296
NP G + I +K+ LL++ D Y + Y +L R +
Sbjct: 184 GQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVPLKALDNE-GRVIV 241
Query: 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEV 356
SK TG+R+G+I + + A +ISQ + L GY
Sbjct: 242 AGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYH 300
Query: 357 VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDF 396
+ + ++E+RD ++K+ L + ++P ++
Sbjct: 301 LEGALLGYKEKRDIMLKALENHLPNAEFTKPIAGMFVMFFL 341
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 1e-41
Identities = 62/298 (20%), Positives = 108/298 (36%), Gaps = 22/298 (7%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
++ +A PV + A I+ + + RY P+A L A+ +
Sbjct: 26 LLDFSANINPLGMPVSVKRALIDNL-DCIERY-PDADYFHLHQALARHH----QVP--AS 77
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
IL NG +SI + +I P + Y + R ++ + L
Sbjct: 78 WILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL 135
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
+LE LT L LC+P+NPTG + + LL IA L+L DE + +
Sbjct: 136 TDAILE-ALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLIL-DEAFID--F 191
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAACNKIQSQFTSGA 335
P T F + +K +A+ G RLGY + +A + Q ++
Sbjct: 192 IPH-ETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWS--V 248
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
++++ AG AL RE ++ +L + + + + L
Sbjct: 249 NALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLL 302
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* Length = 356 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-41
Identities = 69/331 (20%), Positives = 128/331 (38%), Gaps = 48/331 (14%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
+ L A E + + +N RY P + G+ P+
Sbjct: 31 DVWLNANEYPTAVEFQLTQQTLN-------RY-PECQPKAVIENYAQYA----GVK--PE 76
Query: 157 QILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
Q+LVS GA + I + A C PG D ++ P + Y A +PT +N+
Sbjct: 77 QVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQ 134
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP-RLLVLSDEIYEHI 274
LD + + KL + +++ +CSP+NPTG + + ++ + +V++DE Y I
Sbjct: 135 LDLQGISDKL-DGVKVVYVCSPNNPTGQLINP---QDFRTLLELTRGKAIVVADEAY--I 188
Query: 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334
+ P S A + + SKAFA+ G R G+ + + K+ + +
Sbjct: 189 EFCPQ--ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPL- 245
Query: 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
S+ AL G + + V R++L+ + E+ V+
Sbjct: 246 -STPVADIAAQALSP--QGIVAMRERVAQIIAEREYLIAALKEIPCVE------------ 290
Query: 395 DFSTYYGSEAEGF--GKIENSESLCRYLLDK 423
+ SE + + + S ++ + L D+
Sbjct: 291 ---QVFDSETN-YILARFKASSAVFKSLWDQ 317
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 Length = 390 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 3e-41
Identities = 54/335 (16%), Positives = 123/335 (36%), Gaps = 35/335 (10%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF T I EA + G Y+ E +AI H ++ + ++
Sbjct: 39 DFATAPCIIEALNQRLMHGVFGYSRWKND-EFLAAIAHWFSTQHYTAIDSQTVVYGPSVI 97
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
+ + + G+ V+I P +Y + + + + + + D L
Sbjct: 98 YMVSELIRQWSETGEGVVIHTP---AYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKL 154
Query: 222 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E+ L + + ++++LCSP NPTG V+ + L+ +A + +H + V+SDEI+ +++
Sbjct: 155 EAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERH-GVRVISDEIHMDMVWGEQP 213
Query: 281 HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQ 340
H ++++ + SK+F + Y + + + + S
Sbjct: 214 HIPWSNVAR--GDWALLTSGSKSFNIPALTGAYG------IIENSSSRDAYLSALKGRDG 265
Query: 341 KAGVAALGL-----GYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLF 393
+ + L L Y G + + ++ ++ + PQ + +
Sbjct: 266 LSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAW 325
Query: 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+D + L + L+++ +V +
Sbjct: 326 LDLRPLNIDDNA----------LQKALIEQEKVAI 350
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-40
Identities = 58/339 (17%), Positives = 122/339 (35%), Gaps = 39/339 (11%)
Query: 87 ATALAQAGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
T G ++ ++ P P I + Y P+ L +I + L
Sbjct: 18 YTEGVFKGRELLDYSSNINP-LGIPKSFLNNIDEGI-KNLGVY-PDVNYRRLNKSIENYL 74
Query: 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVI 205
L I++ NGA + I ++ ++++I P + Y A+ + V
Sbjct: 75 ----KLK--DIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVVF 124
Query: 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265
EN +D + + SK+ + +I+ +P+NP G + K + ++ + + ++
Sbjct: 125 SYLD--ENMCIDYEDIISKIDDV-DSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTII 181
Query: 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKHFVAAC 324
+ DE + I + +SF + + +K FAM G R GY I K A
Sbjct: 182 I-DEAF--IEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKI 238
Query: 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384
Q+ + + ++ A + L + + + ++ R ++ ++ +K
Sbjct: 239 KAKQNPWN--INCFAEMAAINCL----KDTNYIEESLLWIKKERKRFIEELNKIGFIKRV 292
Query: 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
A ++ + E L LL +
Sbjct: 293 FSPHANFVLCRLENI------------SGEKLYDSLLKE 319
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} Length = 363 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 4e-40
Identities = 64/334 (19%), Positives = 120/334 (35%), Gaps = 48/334 (14%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
+ +L++ E T +A N+ E Y P+ LR + L +
Sbjct: 34 ITKLSSNENPLGTSKKVAAIQANSSVE-TEIY-PDGWASSLRKEVADFY----QLE--EE 85
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
+++ + G + I + ++ P +V Y + A I A +P ++
Sbjct: 86 ELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEH 143
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHI 274
D + + + + EK+ ++ +C+P+NPTG+ +I + + P L+VL DE Y
Sbjct: 144 DLEGMLNAIDEKTTIVWICNPNNPTGNYIEL---ADIQAFLDRVPSDVLVVL-DEAYIE- 198
Query: 275 IYAPATHTSFASLPGMWE-----RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329
Y L ++ RT FSK + + R+GY K + N ++
Sbjct: 199 -YVTPQPEKHEKLVRTYKNLIITRT-----FSKIYGLASARVGYGIADKEIIRQLNIVRP 252
Query: 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA 389
F +SI QK + A+ + + + E VK+ G
Sbjct: 253 PF--NTTSIGQKLAIEAI----KDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGN 306
Query: 390 FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
F + ID + ++ YL
Sbjct: 307 F-VLIDLG-------------IEAGTIFSYLEKN 326
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Length = 391 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 5e-40
Identities = 79/336 (23%), Positives = 141/336 (41%), Gaps = 37/336 (11%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF I ++ N + + YT +I + L + + ++ S G
Sbjct: 43 DFKAAPCIIDSLKNRLEQEIYGYTTR--PDSYNESIVNWLYRRHNWKIKSEWLIYSPGVI 100
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN--FLLDPKV 220
+I + + D+++I P Y + +I P + EN +++D +
Sbjct: 101 PAISLLINELTKANDKIMIQEP---VYSPFNSVVKNNNRELIISPLQKLENGNYIMDYED 157
Query: 221 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
+E+K+ + +L ILC+P NP G V+ K+ L ++ I KH + ++SDEI+ II
Sbjct: 158 IENKIKD-VKLFILCNPHNPVGRVWTKDELKKLGDICLKH-NVKIISDEIHSDIILKKHK 215
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-----KHFVAACNKIQSQFTSG 334
H AS+ + T+T +K F + G + Y+ P K A +I
Sbjct: 216 HIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRID---IKR 272
Query: 335 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
+ S A A+ Y GE + ++ DF +K E + +K+ +P+G + L
Sbjct: 273 NNCFSLVATEAS----YNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLL 328
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
++DFS S+ E L L+ K +V L
Sbjct: 329 WVDFSALGLSDEE----------LESILVQKGKVAL 354
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Length = 354 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-39
Identities = 60/312 (19%), Positives = 116/312 (37%), Gaps = 24/312 (7%)
Query: 86 QATALAQAGVS-VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHK 144
++ A IR+ E A +A+ + RY L L + +
Sbjct: 6 ESAAFTAPSTDNPIRINFNENPLGMSPKAQAAARDAVVKAN-RY-AKNEILMLGNKLAAH 63
Query: 145 LKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 204
+ IL++ G+ + I A+ A S +++IP + A+IA
Sbjct: 64 H----QVE--APSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVT 117
Query: 205 ILPTRISENFLLDPKVLESKLTEK--SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP- 261
+ +N+ D + L++ + ++ L +P+NPTG++ P D I +A P
Sbjct: 118 KVKML--DNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPA---DVIEPWIASKPA 172
Query: 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321
+ + DE Y + P + + E + + FSK AM G R+GY +
Sbjct: 173 NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVI 232
Query: 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
A + + + A +A++ ++ K+ R L+K+ +L +
Sbjct: 233 ALMGRYVAGE--KINFSGVDAALASM----NDSAFITYSKKSNDVSRQILLKALEDL-KL 285
Query: 382 KMSEPQGAFYLF 393
+G F
Sbjct: 286 PYLPSEGNFVFH 297
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* Length = 399 | Back alignment and structure |
|---|
Score = 144 bits (367), Expect = 2e-39
Identities = 70/333 (21%), Positives = 123/333 (36%), Gaps = 30/333 (9%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
+F P + E + E YT T E + + +K+ + D I+ + G
Sbjct: 42 EFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVV 99
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
++ AV PGD VII P Y + + + +D + L
Sbjct: 100 PAVFNAVREFTKPGDGVIIITP---VYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKL 156
Query: 222 ESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E + ++ L+ CSP NP G V+ K+ L +I IV K L++ SDEI+ +I
Sbjct: 157 EKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYE 215
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSGASS 337
HT F S+ + ++T+T SK F + G + I P + ++
Sbjct: 216 HTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTT 275
Query: 338 ISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFID 395
+ KA Y + +K + + + F +K +G + +ID
Sbjct: 276 LGYKACEIC----YKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWID 331
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
F + +++ KAQ+
Sbjct: 332 FRALKMDHKA----------MEEFMIHKAQIFF 354
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} Length = 391 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-39
Identities = 59/336 (17%), Positives = 128/336 (38%), Gaps = 36/336 (10%)
Query: 106 DFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 162
DF I + ++ G+ E A+ + E+ D + ++
Sbjct: 38 DFKIAPEIMASMEEKLKVAAFGYESVPA-----EYYKAVADWEEIEHRARPKEDWCVFAS 92
Query: 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDP 218
G +I V SPGD++++ P Y + + + + + ++
Sbjct: 93 GVVPAISAMVRQFTSPGDQILVQEP---VYNMFYSVIEGNGRRVISSDLIYENSKYSVNW 149
Query: 219 KVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
LE KL T R+++ C+P NP G + + + IA + AKH ++L++SDEI+ ++
Sbjct: 150 ADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKH-QVLLISDEIHGDLVLT 208
Query: 278 PATHTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSG 334
T ++ +++ SK F + I P A
Sbjct: 209 DEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESFFLAGIGE 268
Query: 335 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
+ ++ A +AA Y G + ++ + R+ + + + + VK+ + ++
Sbjct: 269 PNLLAIPAAIAA----YEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLA 324
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
++D S + + C+YL +K +++
Sbjct: 325 WVDISALGMNAED----------FCKYLREKTGLII 350
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* Length = 392 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-39
Identities = 80/336 (23%), Positives = 143/336 (42%), Gaps = 36/336 (10%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF+ + +A + + YT + EL A+ K E+ S+ + I+ G
Sbjct: 42 DFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVV 99
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
+I A+ A G+ V+I +P YP AR V + F +D + L
Sbjct: 100 PAISIAIQAFTKEGEAVLINSP---VYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQL 156
Query: 222 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E+ + E +L +LC+P NP G V+ + +L++I + KH ++++SDEI++ +
Sbjct: 157 ENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKH-HVILVSDEIHQDLTLFGHE 215
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGYIAGP-----KHFVAACNKIQSQFTSG 334
H SF ++ P + L ++ +K F + G + Y F
Sbjct: 216 HVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN---NHHE 272
Query: 335 ASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYL 392
SS+ A A Y G+ + + E F V+ F + +K+ +PQG + +
Sbjct: 273 VSSLGYIATETA----YRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLI 328
Query: 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
++DFS Y ++ L L D+A+V+L
Sbjct: 329 WLDFSDYGLTDDA----------LFTLLHDQAKVIL 354
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} Length = 367 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 4e-39
Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 44/333 (13%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
+++L A E + P + + E RY P + LR+ + + +
Sbjct: 32 LVKLDAMENPYRLPPALRSELAARLGEVALNRY-PVPSSEALRAKLKEVM----QVP-AG 85
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
++L+ NG+ + I LA PG +V+ P P +V Y A+ A V +P R +F
Sbjct: 86 MEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLR--ADFT 143
Query: 216 LD-PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP----RLLVLSDEI 270
LD +L + + ++ L P+NPTG+++ ++ IV R LV+ DE
Sbjct: 144 LDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFD---AADMEAIVRAAQGSVCRSLVVVDEA 200
Query: 271 YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330
Y+ +A S+ S + L + SK + G RLGY+AG ++ +K++
Sbjct: 201 YQP--FAQE---SWMSRLTDFGNLLVMRTVSK-LGLAGIRLGYVAGDPQWLEQLDKVRPP 254
Query: 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390
+ + +++ + AL V+ + R R + + GV + F
Sbjct: 255 YNV--NVLTEATALFAL----EHVAVLDEQAAQLRAERSRVAEGMAAHGGVTVFPSAANF 308
Query: 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
L ++ ++ LL +
Sbjct: 309 LLA---------------RVPDAAQTFDRLLAR 326
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Length = 421 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 5e-39
Identities = 77/332 (23%), Positives = 142/332 (42%), Gaps = 29/332 (8%)
Query: 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165
DF I EA IN RE Y +L A+ ++E+ + + IL +G
Sbjct: 72 DFLPVPEIKEAIINYGREHIFGYN--YFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVV 129
Query: 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT---PVILPTRISEN-FLLDPKVL 221
+I A+ A GD V+I +P Y AR V +I F +D + L
Sbjct: 130 PAISIALQAFSEKGDAVLINSP---VYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQL 186
Query: 222 ESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT 280
E + + ++ +LCSP NP G V+ + L +IA + KH ++++SDEI++ + T
Sbjct: 187 EKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKH-GVILVSDEIHQDLALFGNT 245
Query: 281 HTSFASL-PGMWERTLTVNGFSKAFAMTGWRLGY--IAGPKHFVAACNKIQSQFTSGASS 337
H S +L + T+ ++ +K F + G + + I + + +
Sbjct: 246 HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPT 305
Query: 338 ISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396
+ A AA + G+ + ++ ++K +K+ EP+G + +++DF
Sbjct: 306 VGMIATQAA----FQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDF 361
Query: 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
S Y ++ + L L ++A+V+L
Sbjct: 362 SAYAIAQPQ----------LSEKLQNEAKVVL 383
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 1e-37
Identities = 51/297 (17%), Positives = 105/297 (35%), Gaps = 31/297 (10%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
++ + + + + + Y P LR + + + +
Sbjct: 17 IVNFSTTVWTDGDKDHLEKHLVENL-NCIRHY-PEPDAGTLRQMLAKRN----SVD--NN 68
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
ILV+NG + Q A G +I P + Y + R+ + P+ E+
Sbjct: 69 AILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSN--EDIG- 123
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
LC+P+NP G + + EI R++ HP + D+ Y +
Sbjct: 124 ------EADFSNMDFCWLCNPNNPDGRLLQR---TEILRLLNDHPDTTFVLDQSYVS--F 172
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
A + G + + V FS A+ + G R+GYI K F+ + + +
Sbjct: 173 TTEEVIRPADIKG-RKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTPWA--VN 229
Query: 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
+++ +A L + ++ ++ + + L+GV++ F+L
Sbjct: 230 ALAIEAAKFIL----IHPAQFTLPIRKWQRNTVDFITALNRLDGVEVHPSGTTFFLL 282
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Length = 365 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 4e-37
Identities = 61/317 (19%), Positives = 118/317 (37%), Gaps = 36/317 (11%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156
VI+LA+ E F TP E + Y P+ +EL+S + K + +
Sbjct: 32 VIKLASNENPFGTPPKAIEC-LRQNANKAHLY-PDDSMIELKSTLAQKY----KVQ--NE 83
Query: 157 QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216
I++ G+ Q I A+ + + + + + Y A+ A + + L
Sbjct: 84 NIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSI--THNLD 141
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHI 274
+ K L ++ +L+ LC P+NP G E + L+V+ D Y
Sbjct: 142 EFKKLYETHKDEIKLIFLCLPNNPLGECLDA---SEATEFIKGVNEDCLVVI-DAAYNEF 197
Query: 275 IYAPATHTSFASLPGMWE-------RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327
+ + E T FSK + + G R+GY + ++A K+
Sbjct: 198 ASFKDSKKHLEPCELIKEFDNVLYLGT-----FSKLYGLGGLRIGYGIANANIISAFYKL 252
Query: 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387
++ F S+++ KA VAA+ E K ++ + + + + +K+ +
Sbjct: 253 RAPF--NVSNLALKAAVAAM----DDDEFTEKTLENNFSQMELYKEFAKKH-NIKIIDSY 305
Query: 388 GAFYLFIDFSTYYGSEA 404
F + F ++
Sbjct: 306 TNF-ITYFFDEKNSTDL 321
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Length = 360 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 63/311 (20%), Positives = 120/311 (38%), Gaps = 33/311 (10%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIR---EGFTRYTPNAGTLELRSAICHKLKEENGLSY 153
I+L E + + +A + + Y P+A + +LR G
Sbjct: 28 WIKLNTNENPYPPSPEVVKAILEELGPDGAALRIY-PSASSQKLREVAGELY----GFD- 81
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213
P I+++NG+ + + + A + G+E+ P + Y +A + A +
Sbjct: 82 -PSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GD 138
Query: 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
F + + ++ L +P+ P G +P L+ I + + +LVL DE Y
Sbjct: 139 FRIAGFP----ERYEGKVFFLTTPNAPLGPSFP---LEYIDELARRCAGMLVL-DETY-- 188
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333
+A + + L E + SK++++ G R+G +AA +KI+ +
Sbjct: 189 AEFAES---NALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRDHYN- 244
Query: 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
++Q A VAAL +S+ + RE R++ + G + QG + LF
Sbjct: 245 -LDRLAQAACVAAL----RDQAYLSECCRRIRETREWFTTELRSI-GYDVIPSQGNY-LF 297
Query: 394 IDFSTYYGSEA 404
G
Sbjct: 298 ATPPDRDGKRV 308
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Length = 425 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 3e-36
Identities = 72/351 (20%), Positives = 135/351 (38%), Gaps = 37/351 (10%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
+S +K S I + A I G PD +T P +AE I + +
Sbjct: 21 ISKIGQNMKSS---IIREILKFAADKDA--ISFGGGVPDPETFPRKELAEIAKEIIEKEY 75
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSY-TPDQILVSNGAKQSILQAVLAVCSPGDE 181
Y+ G L+ I L+ G++ D ++ + G++Q++
Sbjct: 76 HYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESY 135
Query: 182 VIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP- 237
++ P +Y R A V++P E+ +D VLE KL+E + +
Sbjct: 136 CVLDDP---AYLGAINAFRQYLANFVVVPL---EDDGMDLNVLERKLSEFDKNGKIKQVK 189
Query: 238 --------SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289
NP G + I K+ L ++ D+ Y + Y T + G
Sbjct: 190 FIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKI-G 247
Query: 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349
ER + +N FSK A G R+G +AG K F+ + + + +I+ + L
Sbjct: 248 GPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLER 306
Query: 350 GYAGGEVVSKMVKAFRERRDFLVKS----FGELEGVKMSEPQGAFYLFIDF 396
E + ++ +R +R ++ + F ++ GVK + +G ++++
Sbjct: 307 YDL-LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTL 356
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Length = 397 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 62/343 (18%), Positives = 132/343 (38%), Gaps = 35/343 (10%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
++ S I + + G+ + A G P + P AEA +RE
Sbjct: 10 FGKGAGRIQAS---TIRELLKLTQRPGI--LSFAGGLPAPELFPKEEAAEAAARILREKG 64
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
Y+P G LR+ + + P+++L++ G++Q++ G V
Sbjct: 65 EVALQYSPTEGYAPLRAFVAE------WIGVRPEEVLITTGSQQALDLVGKVFLDEGSPV 118
Query: 183 IIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS- 238
++ AP SY + R+ + +P D LE L + + PS
Sbjct: 119 LLEAP---SYMGAIQAFRLQGPRFLTVPA---GEEGPDLDALEEVLKRERPRFLYLIPSF 172
Query: 239 -NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL--PGMWERTL 295
NPTG + P + ++V + L+V+ D+ Y + + A S L + +
Sbjct: 173 QNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVI 231
Query: 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 355
+ FSK + G R+ + + + + ++Q L G++ E
Sbjct: 232 YLGSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFS--E 288
Query: 356 VVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDF 396
+ ++ + +RE+ ++ + + V+ + P+G +++++
Sbjct: 289 RLERVRRVYREKAQAMLHALDREVPKEVRYTRPKGGMFVWMEL 331
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} Length = 337 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 2e-35
Identities = 55/312 (17%), Positives = 102/312 (32%), Gaps = 32/312 (10%)
Query: 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 141
++ + +A + LA E + A I A RY P + +
Sbjct: 3 SVGEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAA-IAAAAARINRY-PFDAEPRVMRKL 60
Query: 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA 201
D +++ G + + + P + Y ++
Sbjct: 61 AEHF----SCP--EDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSGL 112
Query: 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261
+ ++ LLDP L + ++L +PSNPTG E+ ++ +
Sbjct: 113 RHFEIGLT--DDLLLDPNDLAQ--VSRDDCVVLANPSNPTGQALS---AGELDQLRQRAG 165
Query: 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321
L++ DE Y Y+ A L FSK++ + G RLG + GP +
Sbjct: 166 -KLLI-DETYVD--YSSFRARGLAYGE----NELVFRSFSKSYGLAGLRLGALFGPSELI 217
Query: 322 AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381
AA + Q ++ A AAL + +R + + L G
Sbjct: 218 AAMKRKQWFCNV--GTLDLHALEAAL----DNDRAREAHIAKTLAQRRRVADALRGL-GY 270
Query: 382 KMSEPQGAFYLF 393
+++ + F L
Sbjct: 271 RVASSEANFVLV 282
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* Length = 448 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-33
Identities = 63/346 (18%), Positives = 145/346 (41%), Gaps = 33/346 (9%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
S + ++ S + + + + + I LA G P+ T P +I + + + +
Sbjct: 54 FSKKALEMRAS---EVRELLKLVETSDI--ISLAGGLPNPKTFPKEIIRDILVEIMEKYA 108
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
+ Y G LR + L + + I++++G++Q++ +PGD V
Sbjct: 109 DKALQYGTTKGFTPLRETLMKWLGKR-YGISQDNDIMITSGSQQALDLIGRVFLNPGDIV 167
Query: 183 IIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-----LIL 234
++ AP +Y + + + +P ++ + ++LE KL E ++
Sbjct: 168 VVEAP---TYLAALQAFNFYEPQYIQIPL---DDEGMKVEILEEKLKELKSQGKKVKVVY 221
Query: 235 CSPS--NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292
P+ NP G ++ + + +++ +V+ D+ Y + Y+ +L
Sbjct: 222 TVPTFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKIKALDNE-G 279
Query: 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA 352
R + + FSK A G+R+G++ G + + + Q + GY
Sbjct: 280 RVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYL 338
Query: 353 GGEVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFYLFIDF 396
+ + ++ K ++ RRD ++++ E EGVK ++P+G ++++
Sbjct: 339 -EKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKPEGGMFIWVTL 383
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* Length = 335 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 6e-33
Identities = 69/328 (21%), Positives = 123/328 (37%), Gaps = 46/328 (14%)
Query: 97 VIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
LA E F P + + + Y ++ EL I L + +
Sbjct: 21 KTYLALNENPFPFPEDLVDEVFRRLNSDALRIY-YDSPDEELIEKILSYL---DTDFLSK 76
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
+ + V NGA + I +L D + P + Y A+ A + +P ++
Sbjct: 77 NNVSVGNGADEIIYVMMLM----FDRSVFFPPTYSCYRIFAKAVGAKFLEVPLT--KDLR 130
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 275
+ + ++ + +P+NPTG V+ +EI RI+ V DE Y
Sbjct: 131 IPEVN-----VGEGDVVFIPNPNNPTGHVFE---REEIERILKTGA--FVALDEAY---- 176
Query: 276 YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335
S+ +E + FSKAF++ R+GY+ + F+ A N+++ F
Sbjct: 177 -YEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLPFNV-- 233
Query: 336 SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFID 395
S +SQ AL E+ + K E R+ + + E+ G ++++ +G F
Sbjct: 234 SYVSQMFAKVAL----DHREIFEERTKFIVEERERMKSALREM-GYRITDSRGNFVFV-- 286
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDK 423
F + E E L +L K
Sbjct: 287 -----------FMEKEEKERLLEHLRTK 303
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Length = 425 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 66/365 (18%), Positives = 132/365 (36%), Gaps = 47/365 (12%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV-LIAEAGINAIREGF 125
++ A PS I L++ S+I LA G P+ + P N F
Sbjct: 7 ITAASAARNPS---PIRTMTDILSRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQF 63
Query: 126 TR--------YTPNAGTLELRSAICHKLKEENGLSY-------TPDQILVSNGAKQSILQ 170
Y+P+AG EL S + + + + V++G++Q + +
Sbjct: 64 GEEMMKRALQYSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCK 123
Query: 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 230
+ +PGD V++ P + + + + + + + P L L+
Sbjct: 124 VFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVAS---DESGIVPDSLRDILSRWKP 180
Query: 231 L-----------LILCSPS--NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA 277
+ P+ NPTG+ EI + K+ L++ D+ Y + +
Sbjct: 181 EDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDDPYYFLQFN 239
Query: 278 PATHTSFASL--PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGA 335
+F S+ G R + + FSK + +G R+G++ GPK + T
Sbjct: 240 KFRVPTFLSMDVDG---RVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHP 295
Query: 336 SSISQKAGVAALGLGYAGG--EVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFY 391
S+ +Q L G V +++ + ++D ++ + + + P +
Sbjct: 296 STFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMF 355
Query: 392 LFIDF 396
L+I
Sbjct: 356 LWIKV 360
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} Length = 422 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-28
Identities = 51/372 (13%), Positives = 109/372 (29%), Gaps = 69/372 (18%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-PV---LIAEAGINAIRE 123
+ R+ V+ +T + L + L G+P + + L++ G + +
Sbjct: 10 DAARLAQVREE----VTAKYAELKAKN-LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK 64
Query: 124 GFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA------ 174
Y G ++R L D ++ +G+ +I+ +++
Sbjct: 65 DGVDCRNYGGLLGIADIRELWAE------ALGLPADLVVAQDGSSLNIMFDLISWSYTWG 118
Query: 175 --------VCSPGDEVIIPAPFWVSY-----------PEMARIADATPVILPTRISENFL 215
+ + P P Y EM + +
Sbjct: 119 NNDSSRPWSAEEKVKWLCPVP---GYDRHFTITEHFGFEMINVP-----------MTDEG 164
Query: 216 LDPKVLESKLTEKSRLLILCSP--SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
D V+ + + + P NPTG + + E+A + P ++ D Y
Sbjct: 165 PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYAL 224
Query: 274 IIYAPATHTSFASLP-----GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ 328
+ + G R ++ SK G + + A K +
Sbjct: 225 HTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITH-AGSGVSFFASSKENIEWYASHA 283
Query: 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF----LVKSFGELEGVKMS 384
+ G + ++Q A G + K + + + L E K +
Sbjct: 284 NVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWT 343
Query: 385 EPQGAFYLFIDF 396
P G +++ +D
Sbjct: 344 SPTGGYFISVDV 355
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} Length = 427 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-27
Identities = 50/363 (13%), Positives = 101/363 (27%), Gaps = 50/363 (13%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT-----PVLIAEAGINAIR 122
+ R+ I + L + L G+P + +L +
Sbjct: 11 DAERIGLFHED----IKRKFDELKSKN-LKLDLTRGKPSSEQLDFADELLALPGKGDFKA 65
Query: 123 EGFTR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--- 176
T Y G +++R L +Q+L + + +I+ V++
Sbjct: 66 ADGTDVRNYGGLDGIVDIRQIWADLL------GVPVEQVLAGDASSLNIMFDVISWSYIF 119
Query: 177 -----------SPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESK 224
+ I P P Y I ++ ++E+ D +E
Sbjct: 120 GNNDSVQPWSKEETVKWICPVP---GYDRHFSITERFGFEMISVPMNEDGP-DMDAVEEL 175
Query: 225 LTEKSRLLILCSP--SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 282
+ + P SNPTG +++ ++ + P V+ D Y
Sbjct: 176 VKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPE 235
Query: 283 SFASLP-----GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASS 337
+ G R SK G + + G +
Sbjct: 236 VIDIVGLGEAAGNPNRFWAFTSTSKITL-AGAGVSFFLTSAENRKWYTGHAGIRGIGPNK 294
Query: 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF----LVKSFGELEGVKMSEPQGAFYLF 393
++Q A G V+ K + + + L E + + P G +++
Sbjct: 295 VNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFIS 354
Query: 394 IDF 396
+D
Sbjct: 355 LDV 357
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Length = 423 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 59/345 (17%), Positives = 107/345 (31%), Gaps = 37/345 (10%)
Query: 83 ITDQATALAQAGVSVIRLAAGEPDFDT-PV---LIAEAGINAIREGFTR---YT-PNAGT 134
A G++ + + G+P + L+ G +R Y AG
Sbjct: 14 ARQAYEAFKARGLN-LNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGL 72
Query: 135 LELRSAICHKLKEE-------NGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
R+ L + N S ++++ + + S ++I+ P
Sbjct: 73 PSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVP 132
Query: 188 FWVSYPE-MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-LILCSP--SNPTGS 243
Y + +L + + D +E + IL P SNP G
Sbjct: 133 ---GYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGE 188
Query: 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYA------PATHTSFASLPGMWERTLTV 297
+A + A P + +D+ Y P A G +R
Sbjct: 189 TISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248
Query: 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE-- 355
SK G LG++A + + +K + G + + Q V L G E
Sbjct: 249 ASTSKITF-AGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGLEGL 307
Query: 356 ---VVSKMVKAFRERRDFLVKSFGEL-EGVKMSEPQGAFYLFIDF 396
+ + FR + L GE E + P+G +++ +D
Sbjct: 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDT 352
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 8e-08
Identities = 59/472 (12%), Positives = 124/472 (26%), Gaps = 161/472 (34%)
Query: 1 MANSLHSSTSFISNPVNFGHSKIPAQIPGSVSFPSRYLHNFNLNKS--------DRRVLR 52
M L + S I +I + R L + + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 53 VMA--CSGVEEVQV-----DVSLSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAGE 104
C ++ ++ ++A + +++ + L S++
Sbjct: 261 AFNLSC------KILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 105 PDFDTPV-----------LIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY 153
D P +IAE+ IR+G + +N
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAES----IRDGLATW-------------------DNWKHV 350
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDE-------VIIPAPFWVSYPEMARIADATPVIL 206
D++ +I+++ L V P + + F P A I ++
Sbjct: 351 NCDKL-------TTIIESSLNVLEPAEYRKMFDRLSV----F----PPSAHIPTILLSLI 395
Query: 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR----IVAKHPR 262
+ ++ D V+ +KL + S L+ P T S+ ++ E+ A H
Sbjct: 396 WFDVIKS---DVMVVVNKLHKYS--LVEKQPKESTISIP--SIYLELKVKLENEYALHRS 448
Query: 263 LL-----------------VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
++ L Y HI + H E + F F
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNI------EHPERMTLFRMVF- 497
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
L + F+ KI + A G + ++ +
Sbjct: 498 -----LDF-----RFLEQ--KI------------RHDSTAWNASGS-----ILNTLQQLK 528
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 417
+ ++ + + E + +DF + S+
Sbjct: 529 FYKPYICDNDPKYERL--------VNAILDFLPKIEE------NLICSKYTD 566
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 25/127 (19%)
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIADATPVILP 207
D V+NGA+++ + ++ V++ E A ++P
Sbjct: 70 DVARVTNGAREAKFAVMHSLAKKDAWVVM--------DENCHYSSYVAAERAGLNIALVP 121
Query: 208 TRISENFLLDPKVLESKLTEKSR-----LLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
++ + P+ + E + L ++ P G++ + +IA++ +++
Sbjct: 122 KTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-D 177
Query: 263 LLVLSDE 269
+ +L +
Sbjct: 178 VPLLVNG 184
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* Length = 393 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 178 PGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLLIL 234
GDEVI P+ WVS M + A PV + + ++ P+ +E+ +T +++ +I
Sbjct: 78 EGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR----DTLMVTPEHIEAAITPQTKAII- 132
Query: 235 CSPSNP---TGSVYPKNLLDEIARIVAKHPRLLVLSD 268
P G P + LD I + ++ + V+ D
Sbjct: 133 -----PVHYAG--APAD-LDAIYALGERY-GIPVIED 160
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Length = 424 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRIS 211
+ N LQ + EVI+P + + P R TPV I P
Sbjct: 71 VATCNATAG----LQLLAHAAGLTGEVIMP-SMTFAATPHALRWIGLTPVFADIDP---- 121
Query: 212 ENFLLDPKVLESKLTEKSR 230
+ LDP + + +T ++
Sbjct: 122 DTGNLDPDQVAAAVTPRTS 140
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* Length = 367 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 4e-05
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 30/122 (24%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
I +NG A Q + A L V PGDEVI P +V+ E + A PV I P
Sbjct: 54 ISCANGTDALQIVQMA-LGV-GPGDEVITPGFTYVATAETVALLGAKPVYVDIDP----R 107
Query: 213 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
+ LDP++LE+ +T +++ +I C+ D I I +K+ + V+
Sbjct: 108 TYNLDPQLLEAAITPRTKAIIPVSLYGQCAD------------FDAINAIASKY-GIPVI 154
Query: 267 SD 268
D
Sbjct: 155 ED 156
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* Length = 418 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 26/120 (21%)
Query: 158 ILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ ++G+ + L L GDEVI+P+ W++ +A PV + +
Sbjct: 61 VPTTSGS--TALMLALEALGIGEGDEVIVPSLTWIATATAVLNVNALPVFVDVEA----D 114
Query: 213 NFLLDPKVLESKLTEKSRLLI----LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ +DP++++S +T+K++ +I S +N +DEI I +H L V+ D
Sbjct: 115 TYCIDPQLIKSAITDKTKAIIPVHLFGSMAN----------MDEINEIAQEH-NLFVIED 163
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* Length = 399 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 30/122 (24%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
+ V++G A Q L+ L + PGDEVI+P+ +++ ATPV +
Sbjct: 82 VGVNSGMDALQLALRG-LGI-GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE----D 135
Query: 213 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
+ LDP ++E +T ++R L+ + +D + + +H L ++
Sbjct: 136 HPTLDPLLVEKAITPRTRALLPVHLYGHPAD------------MDALRELADRH-GLHIV 182
Query: 267 SD 268
D
Sbjct: 183 ED 184
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} Length = 374 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 25/119 (21%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215
I V G A + L + GDEVI A +++ A ATPV ++
Sbjct: 57 IGVGTGTDALAMSFKM-LNI-GAGDEVITCANTFIASVGAIVQAGATPV--LVDSENGYV 112
Query: 216 LDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL------LDEIARIVAKHPRLLVLSD 268
+DP+ +E+ +T+K++ ++ P + + +A+I KH L ++ D
Sbjct: 113 IDPEKIEAAITDKTKAIM------------PVHYTGNIADMPALAKIAKKH-NLHIVED 158
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} Length = 373 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 30/122 (24%)
Query: 158 ILVSNG--AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV---ILPTRISE 212
I NG A IL+ + GDEVI+P+ +++ A P+
Sbjct: 55 IGCGNGLDALHLILKG-YDI-GFGDEVIVPSNTFIATALAVSYTGAKPIFVEPDI----R 108
Query: 213 NFLLDPKVLESKLTEKSRLLI------LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVL 266
+ +DP ++ES +TEK++ +I + +DEI RI K+ L ++
Sbjct: 109 TYNIDPSLIESAITEKTKAIIAVHLYGQPAD------------MDEIKRIAKKY-NLKLI 155
Query: 267 SD 268
D
Sbjct: 156 ED 157
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* Length = 390 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 158 ILVSNG--AKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMARIADATPV---ILPT 208
++VS+G A ++ A+ GDE+I+PA W + + I
Sbjct: 53 VMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDI- 111
Query: 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+D + L+ +T+ ++ ++ N G P N DEI +I+ +++L D
Sbjct: 112 ---NTLNIDIESLKEAVTDSTKAIL---TVNLLG--NPNN-FDEINKIIGGR-DIILLED 161
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} Length = 446 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 40/264 (15%), Positives = 80/264 (30%), Gaps = 49/264 (18%)
Query: 162 NGAKQSILQAVLAVCSPGDEVIIP---------APFWVSYPEMARIADATPVILPTRISE 212
NG IL + + ++++ A I+ + T S
Sbjct: 79 NGTTSGILSVIQSFSQKKGDILMARNVHKSVLHA---------LDISQQEGHFIETHQSP 129
Query: 213 NFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 271
KV S+L +L++L P N G + ++E+ + + + I
Sbjct: 130 LTNHYNKVNLSRLNNDGHKLVVLTYP-NYYGETFN---VEEVIKSLHQL--------NIP 177
Query: 272 EHIIYAPATHTSFASLPG---MWERTLTVNGFSK---AFAMTGWRL--GYIAGPKHFVAA 323
I A H P ++ V F K A M ++ +
Sbjct: 178 VLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEY 237
Query: 324 CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383
+ Q+ +S + I AA + A R + +++ G +M
Sbjct: 238 LSYFQT--SSPSYLIMASLESAAQFYKTYDST----LFFAKRAQLIECLENK----GFEM 287
Query: 384 SEPQGAFYLFIDFSTYYGSEAEGF 407
+ L I + + G + + +
Sbjct: 288 LQVDDPLKLLIKYEGFTGHDIQNW 311
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* Length = 388 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 178 PGDEVIIPAPF-WVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSR 230
PG EVI+P F ++S + A+ A V + + LDP+ + + +T +++
Sbjct: 77 PGTEVIVP-AFTFISSSQAAQRLGAVTVPVDVDA----ATYNLDPEAVAAAVTPRTK 128
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* Length = 375 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 178 PGD--EVIIPAPFWVSYPEMARIADATPV---ILPTRISENFLLDPKVLESKLTEKSRLL 232
D E+I +V+ M + TPV I +D LE + E+++ +
Sbjct: 71 SADRNEIITTPISFVATANMLLESGYTPVFAGIKND-----GNIDELALEKLINERTKAI 125
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268
+ + G ++ + ++ KH L LSD
Sbjct: 126 V---SVDYAG--KSVE-VESVQKLCKKH-SLSFLSD 154
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 43/268 (16%), Positives = 90/268 (33%), Gaps = 46/268 (17%)
Query: 163 GAKQSILQAVLA----------VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212
G +S+L A+ + +P E ++P ++ + A+ V P +
Sbjct: 168 GGTESLLLAMKTYRDWARATKGITAP--EAVVPVSAHAAFDKAAQYFGIKLVRTP--LDA 223
Query: 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE 272
++ D + +T + ++ +P P G V P + EIA + A+H + +
Sbjct: 224 DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEHGIGCHVDACLGG 280
Query: 273 HIIYAPATHTS-----FASLPGMWERTLTVNGFSKAFAMTG-----WRLGYIAGPKHFVA 322
I+ L G+ +++ + + G +R + +
Sbjct: 281 FILPWAERLGYPVPPFDFRLEGVT--SVSADTHKYGYGAKGTSVILYRRPDLL-HYQYFI 337
Query: 323 ACN---KIQSQFT-----SGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVK 373
A + + T GA S + A + +LG GY + + D L
Sbjct: 338 AADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYL------DATRRILQAADRLKA 391
Query: 374 SFGELEGVK-MSEPQGAFYLFIDFSTYY 400
+ +K + +P + D Y
Sbjct: 392 GVRAIPSLKILGDPLWVIAVASDELNIY 419
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 100.0 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 100.0 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 100.0 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 100.0 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 100.0 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 100.0 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 100.0 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 100.0 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 100.0 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 100.0 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 100.0 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 100.0 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 100.0 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 100.0 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 100.0 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 100.0 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 100.0 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 100.0 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 100.0 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 100.0 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 100.0 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 100.0 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 100.0 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 100.0 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 100.0 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 100.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 100.0 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 100.0 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 100.0 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 100.0 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 100.0 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 100.0 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 100.0 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 100.0 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 100.0 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 100.0 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 100.0 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 100.0 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 100.0 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 100.0 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 100.0 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 100.0 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 100.0 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 100.0 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 100.0 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 100.0 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 100.0 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 100.0 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 100.0 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 100.0 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.98 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.98 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.98 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.98 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.97 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.97 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.97 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.97 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.97 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.97 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.97 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.97 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.97 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.97 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.97 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.97 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.97 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.97 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.97 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.97 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.97 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.97 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.97 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.97 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.97 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.97 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.97 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.97 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.97 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.97 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.97 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.97 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.97 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.97 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.97 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.96 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.96 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.96 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.96 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.96 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.96 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.96 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.96 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.96 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.96 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.96 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.96 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.96 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.96 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.96 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.96 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.96 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.96 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.96 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.96 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.95 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.95 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.95 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.95 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.95 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.95 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.95 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.95 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.95 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.95 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.95 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.95 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.95 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.95 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.95 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.95 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.95 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.95 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.95 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.94 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.94 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.94 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.94 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.94 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.94 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.94 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.94 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.94 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.93 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.93 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.93 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.93 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.93 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.93 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.93 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.93 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.93 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.93 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.93 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.92 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.92 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.92 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.92 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.92 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.92 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.92 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.92 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.91 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.91 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.9 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.82 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.89 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.89 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.89 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.88 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.88 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.88 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.87 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.84 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.81 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 99.72 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 99.68 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.66 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 99.65 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.62 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.55 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.54 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.54 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.52 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.43 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 80.9 |
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=408.03 Aligned_cols=345 Identities=43% Similarity=0.721 Sum_probs=308.2
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+++++..++++.+.++...+.++...++++|+|+.|+|++++|+.+.+++.+.+..+..+|++..|..+||+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 83 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRR 83 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 78889999999988888888887777788999999999998899999999998876667898888999999999999999
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|..+++++|++|+|+++++.+++++++++||+|+++.|+|..|...++..|++++.+++++++++.+|+++|++++++
T Consensus 84 ~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 163 (385)
T 1b5p_A 84 ENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITP 163 (385)
T ss_dssp TTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCCT
T ss_pred HhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcCC
Confidence 88988889999999999999999999999999999999999999999999999999999997656788999999999988
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++ ...++..+.. +++++++||||.+|++
T Consensus 164 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~-~~~~~~~~~~--~~~i~~~s~SK~~~~~ 239 (385)
T 1b5p_A 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEG-EHFSPGRVAP--EHTLTVNGAAKAFAMT 239 (385)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSS-CCCCGGGTCT--TTEEEEEESTTTTTCG
T ss_pred CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCCHHHcCC--CCEEEEEechhhcCCc
Confidence 899999999999999999999999999999999 99999999999998876 5556666643 7899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.........+++.+.|.++.++|+......+++++.++.++++|+.+.+.|+++ |+++..|+
T Consensus 240 G~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 318 (385)
T 1b5p_A 240 GWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRPS 318 (385)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCS
T ss_pred ccceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCC
Confidence 99999999999999999888777777889999999999996300014678899999999999999999998 89988999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++||+|++++.. + .+..+++++|+ ++||.+
T Consensus 319 ~~~~~~~~~~~~-~---------~~~~~l~~~l~-~~gv~v 348 (385)
T 1b5p_A 319 GAFYVLMDTSPI-A---------PDEVRAAERLL-EAGVAV 348 (385)
T ss_dssp BTTEEEEECTTT-C---------SSHHHHHHHHH-HTTEEC
T ss_pred eeEEEEEecCCC-C---------CCHHHHHHHHH-HCCeEE
Confidence 999999999732 1 26889999998 559976
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=393.48 Aligned_cols=347 Identities=45% Similarity=0.790 Sum_probs=310.0
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++++.++++.+..+...+++....|+++|+|+.|++++++|+.+.+++.+.+..+..+|++..|..++|+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 82 (388)
T 1j32_A 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQR 82 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhHhHhCCccHHHHHHHHHHHHHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 67888888888888888888887777889999999999988899999999998876667898888999999999999999
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|.++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.++++.+|++.|++++++
T Consensus 83 ~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 162 (388)
T 1j32_A 83 DNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP 162 (388)
T ss_dssp HHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT
T ss_pred hcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc
Confidence 89987888999999999999999999999999999999999999999999999999999987655688999999999998
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC-CCCceEEEeccChhccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAM 306 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~ 306 (429)
++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.+++....++..+.. ..++++++.||||.+|+
T Consensus 163 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~ 241 (388)
T 1j32_A 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTC
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCC
Confidence 899999999999999999999999999999999 9999999999999887765556665542 14688999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.......+.+++.+.|.++.++|+. ..++++++++.++++++++.+.|++++|+++..|
T Consensus 242 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 318 (388)
T 1j32_A 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECPKP 318 (388)
T ss_dssp TTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCCC
T ss_pred cccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCC
Confidence 9999999999999999998877777778899999999999985 4678999999999999999999999889999889
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+|++++.. + .+..+++++|++++||.+
T Consensus 319 ~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~gi~v 350 (388)
T 1j32_A 319 DGAFYMFPSIAKT-G---------RSSLDFCSELLDQHQVAT 350 (388)
T ss_dssp CBTTEECCBCGGG-T---------CCHHHHHHHHHHHHCEEC
T ss_pred CeeEEEEEecCCC-C---------CCHHHHHHHHHHhCCEEE
Confidence 9999999988641 1 267899999988669876
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-49 Score=394.25 Aligned_cols=350 Identities=25% Similarity=0.405 Sum_probs=292.0
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHK 144 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~ 144 (429)
|.+++++..++++.+..+...+.+....|+++|+|+.|++++++|+.+.+++.+.+... ...|++..|..++|++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~ 87 (412)
T 2x5d_A 8 ARRFARIDRLPPYVFNITAELKMAARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHW 87 (412)
T ss_dssp -------------CHHHHHHHHHHHHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHH
T ss_pred cchhHHHhhcCchHHHHHHHHHHHHhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHH
Confidence 33678888888888888877777777788899999999999888899999998877553 45798888999999999999
Q ss_pred HHhhcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh
Q 014172 145 LKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 145 l~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
+.+.+|.++++ ++|++|+|+++++.+++++++++||+|+++.|+|+++...++..|++++.+++++++++.+|++.+++
T Consensus 88 ~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 167 (412)
T 2x5d_A 88 YRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIR 167 (412)
T ss_dssp HHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHH
Confidence 99888987788 79999999999999999999999999999999999999999999999999998765466689999999
Q ss_pred hcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 224 ~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
++++++++|++++||||||.+++.+++++|+++|++| |++||+||+|..+.+++....++..+....++++++.||||.
T Consensus 168 ~i~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~ 246 (412)
T 2x5d_A 168 ESIPKPRMMILGFPSNPTAQCVELDFFERVVALAKQY-DVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKS 246 (412)
T ss_dssp TEESCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-C
T ss_pred hcccCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccc
Confidence 9988999999999999999999999999999999999 999999999999988765555666665445789999999999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+|++|+|+||+++++++++.+.......+.+.+.++|.++.++|+. .+++++++++.++++++++.+.|+++ |+++
T Consensus 247 ~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 322 (412)
T 2x5d_A 247 YNMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG---DQQCVRDIARQYQQRRDVLVKGLREA-GWMV 322 (412)
T ss_dssp CSCTTSCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHHH-TCCC
T ss_pred cCCcccceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHC-CCEe
Confidence 9999999999999999999998877766778899999999999986 46789999999999999999999988 8888
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+|++|+|+|++++...+ ..+..+++++|++++||.+
T Consensus 323 ~~~~~g~~~~~~~~~~~~--------~~~~~~~~~~l~~~~gi~v 359 (412)
T 2x5d_A 323 ENPKASMYVWAKIPEPYA--------HLGSLEFAKKLLQDAKVSV 359 (412)
T ss_dssp CCCSBSSEEEEECCTTTG--------GGCHHHHHHHHHHHHCEEC
T ss_pred cCCCeeeEEEEEcCCccC--------CCCHHHHHHHHHHHCCEEE
Confidence 889999999999974210 0157899999988779976
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-49 Score=388.70 Aligned_cols=339 Identities=27% Similarity=0.418 Sum_probs=297.8
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.++ +++.++++.+.++...++++...|+++|+|+.|++++++|+.+.+++.+.+.++...|++..|..++|+++++++.
T Consensus 4 ~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~ 82 (391)
T 3h14_A 4 KNS-SRSAVDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYG 82 (391)
T ss_dssp CCC-STTCCCCCTTHHHHHHHHHHHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHH
T ss_pred hhh-hHhhcCcchHHHHHHHHHHHHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHH
Confidence 455 8899999999999999999988999999999999999999999999999887666789888899999999999999
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+.+|+++++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+++++++++.+|+++++++
T Consensus 83 ~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~-- 160 (391)
T 3h14_A 83 EWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL-- 160 (391)
T ss_dssp HHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS--
T ss_pred HHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc--
Confidence 999988899999999999999999999999999999999999999999999999999999998777788999999887
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.+++. ..++..+ .+++++++||||.+|+
T Consensus 161 -~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~---~~~~i~~~s~sK~~g~ 234 (391)
T 3h14_A 161 -DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQ-GASFISDEIYHGIEYEAK-AVTALEL---TDECYVINSFSKYFSM 234 (391)
T ss_dssp -CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSC-CCCGGGT---CSSSEEEEESSSTTCC
T ss_pred -CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEECcchhcccCCC-CcChhhc---CCCEEEEEechhccCC
Confidence 789999999999999999999999999999999 999999999999988764 2333333 4788999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+......++.+++.+.|.++.+++.. .+++++.+++++++++.+.+.|++++...+..|
T Consensus 235 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 310 (391)
T 3h14_A 235 TGWRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDC----DAELQANLDVYKANRKLMLERLPKAGFTRIAPP 310 (391)
T ss_dssp TTSCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCC
T ss_pred ccceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 9999999999999999999888888888999999999888873 788999999999999999999998843444688
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+|++++.. + .+..+++++|++++||.+
T Consensus 311 ~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~gi~v 342 (391)
T 3h14_A 311 DGAFYVYADVSDL-T---------DDSRAFAAEILEKAGVAV 342 (391)
T ss_dssp CBTTEEEEECTTT-C---------SCHHHHHHHHHHHHCEEC
T ss_pred CeeEEEEEecCcc-C---------CCHHHHHHHHHHHCCEEE
Confidence 9999999999752 0 378899999998889986
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=401.02 Aligned_cols=350 Identities=23% Similarity=0.425 Sum_probs=297.4
Q ss_pred cCCchhHHHHHHHHHH----HhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhc
Q 014172 75 VKPSKTVAITDQATAL----AQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEEN 149 (429)
Q Consensus 75 ~~~~~~~~~~~~~~~~----~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~ 149 (429)
++++.+..+...+..+ +..++++|+|+.|.|++++|+.+.+++.+++.+ +..+|++..|..+||+++++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~ 112 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIY 112 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTT
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 6778777777766554 235678999999999999999999999998865 45689888899999999999999888
Q ss_pred CCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC----------CCCCCHH
Q 014172 150 GLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE----------NFLLDPK 219 (429)
Q Consensus 150 g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~e 219 (429)
|..+++++|++|+|+++++..++++++++||+|++++|+|..|...++..|++++.+++++++ +|.+|++
T Consensus 113 g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 192 (447)
T 3b46_A 113 NTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFE 192 (447)
T ss_dssp TSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHH
T ss_pred CCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHH
Confidence 888888999999999999999999999999999999999999999999999999999986543 5789999
Q ss_pred HHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC-CCCCCceEEEe
Q 014172 220 VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVN 298 (429)
Q Consensus 220 ~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 298 (429)
+|++++++++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++ .+.++..+ .+..++++++.
T Consensus 193 ~l~~~l~~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~ 270 (447)
T 3b46_A 193 QFEKAITSKTKAVIINTPHNPIGKVFTREELTTLGNICVKH-NVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVG 270 (447)
T ss_dssp HHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEE
T ss_pred HHHHhhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEe
Confidence 99999998999999999999999999999999999999999 99999999999998876 34455555 22357899999
Q ss_pred ccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 299 GFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 299 S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
||||.++++|||+||+++ ++++++.+........++.+.+.|.++.++|+... .+++++++++.++++++++.+.|++
T Consensus 271 S~sK~~~~~G~riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~ 349 (447)
T 3b46_A 271 SAGKSFAATGWRIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDAL-KIGYFEKMRQEYINKFKIFTSIFDE 349 (447)
T ss_dssp EHHHHTTCTTSCCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhcCCcchhhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999887666677789999999999998621 1567889999999999999999999
Q ss_pred CCCceeecCCceEEEEEecCCccCCccc----CCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAE----GFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ |+++..|++|+|+|++++....+... ..+...++.+++++|++++||.+
T Consensus 350 ~-g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v 403 (447)
T 3b46_A 350 L-GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVA 403 (447)
T ss_dssp H-TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEEC
T ss_pred C-CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEE
Confidence 8 88888899999999999752000000 00001256789999998789986
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=385.74 Aligned_cols=343 Identities=43% Similarity=0.673 Sum_probs=302.1
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.+++++..++++.+.++.+.+++. +++|+|+.|++++++|+.+.+++.+.+......|++..|..++|+++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~ 77 (389)
T 1gd9_A 2 ALSDRLELVSASEIRKLFDIAAGM----KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLK 77 (389)
T ss_dssp CHHHHHHHSCCCHHHHHHHHHHTC----SSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred chhhHhHhCChhHHHHHHHHHhhh----cCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 467888888988877776665432 4689999999998888999999999987766789888899999999999999
Q ss_pred hhcCCCCCCCc-EEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 147 EENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 147 ~~~g~~~~~~~-i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
+.+|.++++++ |++|+|+++++..++++++++||+|++++|+|+++...++..|++++.+|+++++++.+|++.|++++
T Consensus 78 ~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 157 (389)
T 1gd9_A 78 KQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV 157 (389)
T ss_dssp HHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC
T ss_pred HHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhc
Confidence 88897778889 99999999999999999999999999999999999999999999999999876556789999999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
++++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++....++..+.+..++++++.||||.+|
T Consensus 158 ~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 236 (389)
T 1gd9_A 158 TDKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 236 (389)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTT
T ss_pred CcCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcC
Confidence 88899999999999999999999999999999999 99999999999998876545566666544578999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
++|+|+||+++++++++.+.........+++.+.|.++.++|+. ..+ +++++++.++++++++.+.|+++ |+++
T Consensus 237 ~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~ 312 (389)
T 1gd9_A 237 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKD---ERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPT 312 (389)
T ss_dssp CGGGCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred CcccceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHHHHHHHHHHHc-CCee
Confidence 99999999999999999998877766778899999999999985 344 78999999999999999999998 8988
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..|++++|+|++++.. + .+..+++++|++++||.+
T Consensus 313 ~~~~~~~~~~~~~~~~-~---------~~~~~~~~~l~~~~gi~v 347 (389)
T 1gd9_A 313 VKPKGAFYIFPRIRDT-G---------LTSKKFSELMLKEARVAV 347 (389)
T ss_dssp CCCCBTTEECCBCGGG-T---------CCHHHHHHHHHHHTCEEC
T ss_pred cCCCeeeEEEEeccCC-C---------CCHHHHHHHHHHhCCEEE
Confidence 8899999999998741 0 267899999986679976
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=388.76 Aligned_cols=355 Identities=28% Similarity=0.513 Sum_probs=307.0
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC--CCCCCCCCCHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF--TRYTPNAGTLELRSAICH 143 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~--~~Y~~~~G~~~lr~~ia~ 143 (429)
+.+++++..++++.+.++.+.+. ++++|+|+.|+|++++|+.+.+++.+.+.++. .+|++..|..++|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~ 78 (422)
T 3fvs_A 4 QLQARRLDGIDYNPWVEFVKLAS-----EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILAS 78 (422)
T ss_dssp CCSCGGGTTCCCCHHHHHHHHHH-----TSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHH
T ss_pred hhHHHHhhccCccHHHHHHHHhh-----cCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHH
Confidence 34788999999998777665443 35799999999999999999999999987653 689888899999999999
Q ss_pred HHHhhcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC----------CC
Q 014172 144 KLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----------SE 212 (429)
Q Consensus 144 ~l~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----------~~ 212 (429)
++.+.+|.++++ ++|++|+|+++++..++.+++++||+|+++.|+|.++...++..|++++.+++++ ++
T Consensus 79 ~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~ 158 (422)
T 3fvs_A 79 FFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSS 158 (422)
T ss_dssp HHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGG
T ss_pred HHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEeccccccccccccccc
Confidence 999999988888 7999999999999999999999999999999999999999999999999999875 23
Q ss_pred CCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 213 ~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
+|.+|++.+++++++++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.|++..+.++..+....+
T Consensus 159 ~~~~d~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 237 (422)
T 3fvs_A 159 NWQLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWE 237 (422)
T ss_dssp GSBCCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGG
T ss_pred CCCCCHHHHHhhcCCCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCCCCCCChhhcccccC
Confidence 577999999999999999999999999999999999999999999999 9999999999999998877777777766678
Q ss_pred ceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~-----~~~~~~~~~~~~~~~~~~ 367 (429)
+++++.||||.+|++|+|+||+++++++++.+.........+.+.+.|.++.++|+. +. ..++++++++.++++
T Consensus 238 ~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 316 (422)
T 3fvs_A 238 RTLTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQ-PSSYFVQFPQAMQRC 316 (422)
T ss_dssp GEEEEEEHHHHHTCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTC-TTCHHHHHHHHHHHH
T ss_pred cEEEEecchhccCCccceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccc-hHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887767778899999999999874 22 257889999999999
Q ss_pred HHHHHHHhccCCCceeecCCceEEEEEecCCccCCcc--cCCCCCCChHHHHHHHHHhCCeec
Q 014172 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA--EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 368 r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+.+.|+++ |+++..|++++|+|++++....... .+........+++.+|++++||.+
T Consensus 317 ~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 378 (422)
T 3fvs_A 317 RDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVA 378 (422)
T ss_dssp HHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEE
Confidence 99999999998 9998899999999999864210000 000000006689999998889976
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=392.40 Aligned_cols=339 Identities=12% Similarity=0.104 Sum_probs=271.0
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC---C--CCChHHHHHHHHHHH-H-cCCCCCCCCCCCHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---D--FDTPVLIAEAGINAI-R-EGFTRYTPNAGTLELRSA 140 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~---~--~~~p~~v~~a~~~~~-~-~~~~~Y~~~~G~~~lr~~ 140 (429)
+..++..++++.+..+.+.++.. ..+++|+|+.|.+ + +.+++.+.++.. .+ . ...++|++..|.++||++
T Consensus 4 ~~~~~~~~~~~~i~~~~~~~~~~--~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~a 80 (405)
T 3k7y_A 4 LLSSLENIEVDNILKTAREFKED--TCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTL 80 (405)
T ss_dssp GGGGCCCCCCCHHHHHHHHHTTS--SCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHH
T ss_pred hhhcCCCCCCChHHHHHHHHhcC--CCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHH
Confidence 56788889999877776666542 2357999999973 2 345688888876 43 3 346789999999999999
Q ss_pred HHHHHHhhcCCCCCCCc--EEEecChHHHHHHHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCC
Q 014172 141 ICHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (429)
Q Consensus 141 ia~~l~~~~g~~~~~~~--i~~t~G~~~al~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 216 (429)
+++|+.+.++..+++++ +++|+|+++++.+++.++++ + |+|++++|+|+.|...++..|++++.+|+..++++.+
T Consensus 81 ia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 159 (405)
T 3k7y_A 81 TQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDI 159 (405)
T ss_dssp HHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEE
T ss_pred HHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCc
Confidence 99999777766666764 59999999999999999987 8 9999999999999999999999999999855556889
Q ss_pred CHHHHHhhccc--CCcEEEEcCC-CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCC--CCccccCCCCC
Q 014172 217 DPKVLESKLTE--KSRLLILCSP-SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPAT--HTSFASLPGMW 291 (429)
Q Consensus 217 d~e~l~~~l~~--~~~~i~l~~p-~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~--~~~~~~~~~~~ 291 (429)
|++.+++.+++ +++++++++| |||||.+++.+++++|+++|++| +++||+||+|.++.|++.. ..++..+....
T Consensus 160 d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~-~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~ 238 (405)
T 3k7y_A 160 NYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHK-KHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKN 238 (405)
T ss_dssp CHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEEESCTTTSSSSTTGGGHHHHHHHTTT
T ss_pred CHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CeEEEEecCcccccCCCcccchHHHHHHHhcC
Confidence 99999999863 5678888765 89999999999999999999999 9999999999999886421 22333333335
Q ss_pred CceEEEeccChhcccccceeeEEEc---CHHHHHHHH----HHhhcccCCCchHHHHHHHHHHhcCCCC---hHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACN----KIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMV 361 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~R~G~v~~---~~~~~~~l~----~~~~~~~~~~~~~~q~aa~~~l~~~~~~---~~~~~~~~ 361 (429)
+++|+++||||.|+|+|||+||+++ ++++++.+. ...+...++++.++|.++..+|.++... .++++.++
T Consensus 239 ~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~ 318 (405)
T 3k7y_A 239 IAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLS 318 (405)
T ss_dssp CCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999853 666665543 3334455567889999999988752111 23466778
Q ss_pred HHHHHHHHHHHHHhc----cCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 362 KAFRERRDFLVKSFG----ELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~----~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+++|+.+.+.|+ ++. ++++.+|+||||+|++++. +++++| +++||++
T Consensus 319 ~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~----------------~~~~~L-~~~gV~v 375 (405)
T 3k7y_A 319 QRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLA----------------KIAEHL-KTHHIYI 375 (405)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGG----------------GGTTTT-TTTTEEC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCH----------------HHHHHH-HHCCEee
Confidence 889999999999999 762 2688899999999998752 445677 7778875
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-48 Score=381.09 Aligned_cols=340 Identities=37% Similarity=0.667 Sum_probs=302.5
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
..+++++.++++.+.++...+.+....|+++|+|+.|++++++|+.+.+++.+.+......|++..|..++|+++++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~ 92 (389)
T 1o4s_A 13 MVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIG 92 (389)
T ss_dssp -CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 36788889999999898888888777788999999999988888999999999887656689887899999999999999
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+.+|.++++++|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.+|+++++++.+|+++|+++++
T Consensus 93 ~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~ 172 (389)
T 1o4s_A 93 ERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV 172 (389)
T ss_dssp HHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC
T ss_pred HHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc
Confidence 88898778899999999999999999999999999999999999999999999999999998765568899999999998
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.+++ ...++..+....++++++.||||.+|+
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~ 250 (389)
T 1o4s_A 173 GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSHSM 250 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhcCC
Confidence 8899999999999999999999999999999999 99999999999988865 334555554335789999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.........+++.+.|.++.++|+. . ++++++.++++++++.+.|+++ |+++..|
T Consensus 251 ~G~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~---~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 323 (389)
T 1o4s_A 251 TGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEV---D---NSYMVQTFKERKNFVVERLKKM-GVKFVEP 323 (389)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC---C---CHHHHHHHHHHHHHHHHHHHHT-TCCCCCC
T ss_pred cccceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhc---c---HHHHHHHHHHHHHHHHHHHHhc-CCeeecC
Confidence 9999999999999999998877766677899999999998876 2 6678889999999999999998 8888889
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+|++++ . +..+++++|++++||.+
T Consensus 324 ~~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v 352 (389)
T 1o4s_A 324 EGAFYLFFKVR-G------------DDVKFCERLLEEKKVAL 352 (389)
T ss_dssp SBSSEEEEECS-S------------CHHHHHHHHHHHHCEEC
T ss_pred CcceEEEEeCC-C------------CHHHHHHHHHHHCCEEE
Confidence 99999999986 2 67899999986669876
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=376.50 Aligned_cols=341 Identities=27% Similarity=0.473 Sum_probs=297.5
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
.++++..+.++.+..+...... .++|+|+.|.+++++|+.+.+++.+.+..+...|++..|..++|+++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~ 82 (386)
T 1u08_A 8 PQSKLPQLGTTIFTQMSALAQQ-----HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTER 82 (386)
T ss_dssp CCCSCCCCCCCHHHHHHHHHHH-----TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred cchhhhcCCccHHHHHHHHHhc-----CCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHH
Confidence 4677888887766555443321 35899999999988889999999999876567898888999999999999999
Q ss_pred hcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+|.+++++ +|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++++.+ ++.+|+++|+++++
T Consensus 83 ~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~ 161 (386)
T 1u08_A 83 LYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLS 161 (386)
T ss_dssp HHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCC
T ss_pred HhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHHHHhhc
Confidence 889878888 9999999999999999999999999999999999999999999999999998653 47799999999998
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.|++..+.++..+....++++++.||||.+|+
T Consensus 162 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 240 (386)
T 1u08_A 162 ERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHM 240 (386)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTC
T ss_pred ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCC
Confidence 8899999999999999999999999999999999 999999999999988775555665553235789999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.........+.+.+.|.++..+|+. .++++++++++++++++++.+.|+++ |+++..|
T Consensus 241 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 316 (386)
T 1u08_A 241 TGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA---EPEHYLALPDFYRQKRDILVNALNES-RLEILPC 316 (386)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH---CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCC
T ss_pred cccceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCC
Confidence 9999999999999999988776656667889999999999986 36789999999999999999999998 8998889
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|++++... ..+..+++++|++++||.+
T Consensus 317 ~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v 349 (386)
T 1u08_A 317 EGTYFLLVDYSAVS---------TLDDVEFCQWLTQEHGVAA 349 (386)
T ss_dssp CBSSEEEEECTTTC---------CSCHHHHHHHHHHHSCEEC
T ss_pred CceEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEE
Confidence 99999999997520 0257899999988789986
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=381.45 Aligned_cols=343 Identities=31% Similarity=0.541 Sum_probs=300.0
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
++++++..++++.+..+..... ..+.|+|+.|.+++++|+.+.+++.+.+.++...|++..|..+||+++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~ 76 (411)
T 2o0r_A 2 ATVSRLRPYATTVFAEMSALAT-----RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRR 76 (411)
T ss_dssp CCCGGGGGGSSCHHHHHHHHHH-----TTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred chhhHhHhcCccHHHHHHHHhh-----cCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4678888888887666554332 23589999999998888999999999987656789888899999999999999
Q ss_pred hhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhh
Q 014172 147 EENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESK 224 (429)
Q Consensus 147 ~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~ 224 (429)
+.+|.+++++ +|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.+|++.+ +++.+|++.|+++
T Consensus 77 ~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~ 156 (411)
T 2o0r_A 77 RHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRA 156 (411)
T ss_dssp HHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHH
T ss_pred HHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHh
Confidence 9889877888 9999999999999999999999999999999999999999999999999998654 3467899999999
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
+++++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.|++....++..+....++++++.||||.+
T Consensus 157 l~~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~ 235 (411)
T 2o0r_A 157 VTPRTRALIINSPHNPTGAVLSATELAAIAEIAVAA-NLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMF 235 (411)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHT
T ss_pred hccCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhc
Confidence 998899999999999999999999999999999999 9999999999999887765566666654467899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
|++|+|+||+++++++++.+........++.+.+.|.++.++|+. .+++++++++.++++++++.+.|+++ |+++.
T Consensus 236 ~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 311 (411)
T 2o0r_A 236 NCTGWKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDT---EDAWVAALRNSLRARRDRLAAGLTEI-GFAVH 311 (411)
T ss_dssp TCTTTCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEC
T ss_pred CCccceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHHc-CCEec
Confidence 999999999999999999988776655667788899999999986 47889999999999999999999988 89988
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|++|+|+|++++... ..+..+++++|++++||.+
T Consensus 312 ~~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~~gi~v 346 (411)
T 2o0r_A 312 DSYGTYFLCADPRPLG---------YDDSTEFCAALPEKVGVAA 346 (411)
T ss_dssp CCCBSSEEEEECGGGT---------CCCHHHHHHHHHHHHSEEC
T ss_pred CCCeeEEEEEecCCCC---------CCCHHHHHHHHHHhCCEEE
Confidence 8999999999997520 0257899999987779876
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=386.86 Aligned_cols=340 Identities=19% Similarity=0.345 Sum_probs=296.9
Q ss_pred ccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHHHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELR 138 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr 138 (429)
|+..++++.++++++.++.+..... ++++|+|+.|.|+.. +++.+.+++.+.+.+. ..+|++..|..+||
T Consensus 50 ~~~~~s~~~~~~~~s~~~~~~~~~~-----~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr 124 (448)
T 3aow_A 50 VERFFSKKALEMRASEVRELLKLVE-----TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLR 124 (448)
T ss_dssp GGGGCCHHHHHCCCCHHHHHHHHHH-----TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHH
T ss_pred hHHHhhHHHhcCCCcHHHHHHHhcc-----CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHH
Confidence 6666899999999998777655432 356999999998755 5788999998888653 36898889999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 139 SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 139 ~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
+++++++.+.+|.+ ++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+|++++ .+|+
T Consensus 125 ~~ia~~~~~~~g~~-~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~ 200 (448)
T 3aow_A 125 ETLMKWLGKRYGIS-QDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDDE---GMKV 200 (448)
T ss_dssp HHHHHHHHHHHCCC-TTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECH
T ss_pred HHHHHHHHHhcCcC-ChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCCC---CCCH
Confidence 99999998888976 7899999999999999999999999999999999999999999999999999998643 3899
Q ss_pred HHHHhhcc----c--CCcEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 219 KVLESKLT----E--KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 219 e~l~~~l~----~--~~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
+.|+++++ + ++++|+ +++|+||||.+++.+++++|+++|++| |++||+||+|.++.|++....++..++. .
T Consensus 201 ~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~-~~~lI~De~y~~~~~~g~~~~~~~~~~~-~ 278 (448)
T 3aow_A 201 EILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEY-DFIVVEDDPYGELRYSGNPEKKIKALDN-E 278 (448)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECSCTTCBCSSCCCCCTGGGCT-T
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHhcCC-C
Confidence 99999987 5 789985 699999999999999999999999999 9999999999999987765667766643 5
Q ss_pred CceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l 371 (429)
+++++++||||.++ +|+|+||+++++++++.+.......+.+++.++|.++.++|+.+. ..++++++++.|+++++.+
T Consensus 279 ~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~-~~~~~~~~~~~~~~~~~~l 356 (448)
T 3aow_A 279 GRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGY-LEKHIPEIRKFYKPRRDAM 356 (448)
T ss_dssp SCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence 78999999999999 999999999999999999887777777889999999999998631 1578899999999999999
Q ss_pred HHHhcc-CC-CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 372 VKSFGE-LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 372 ~~~L~~-l~-g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.|++ +| |+++..|.+|+|+|++++.. .+..+++++|+++ ||.+
T Consensus 357 ~~~L~~~~~~g~~~~~p~~g~~~~v~~~~~-----------~~~~~l~~~l~~~-gV~v 403 (448)
T 3aow_A 357 LEALEEFMPEGVKWTKPEGGMFIWVTLPDG-----------IDSKKMLERAIKK-GVAY 403 (448)
T ss_dssp HHHHHHHCCTTCEECCCSBSSEEEEECSTT-----------CCHHHHHHHHHHT-TEEC
T ss_pred HHHHHHhCCCCeEEeCCCccEEEEEEcCCC-----------CCHHHHHHHHHHC-CcEE
Confidence 999987 67 69998899999999999753 3688999999988 9976
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-48 Score=383.29 Aligned_cols=345 Identities=32% Similarity=0.538 Sum_probs=298.2
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia 142 (429)
+.+++++++++++.+..+. .++++...|+++|+|+.|.+ +++.|+.+.+++.+.+......|++..|..++|++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la 88 (406)
T 1xi9_A 10 IRASKRALSVEYAIRDVVL-PARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 88 (406)
T ss_dssp CCCCHHHHTCCC--------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred hhHHHHHhcCChhHHHHHH-HHHHHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHH
Confidence 4678899999999888888 88888888889999999999 7888899999999988766567988889999999999
Q ss_pred HHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHH
Q 014172 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 222 (429)
Q Consensus 143 ~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 222 (429)
+++.+.+|+++++++|++|+|+++++..++++++++||+|++++|+|.++...++..|++++.+|+++++++.+|++.|+
T Consensus 89 ~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 168 (406)
T 1xi9_A 89 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 168 (406)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence 99999999888889999999999999999999999999999999999999999999999999999876456788999999
Q ss_pred hhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc-eEEEeccC
Q 014172 223 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFS 301 (429)
Q Consensus 223 ~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~S 301 (429)
+.+++++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++ ...++..++ .++ +++++|||
T Consensus 169 ~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~-~~~~~~~~~--~~~~~i~~~s~s 244 (406)
T 1xi9_A 169 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEG-EHISPGSLT--KDVPVIVMNGLS 244 (406)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSS-CCCCHHHHC--SSSCEEEEEEST
T ss_pred HhhCcCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEEcCccccccCC-CCCCHHHcC--CCceEEEEeccc
Confidence 99998899999999999999999999999999999999 99999999999988843 334555553 577 89999999
Q ss_pred hhcccccceeeEEE--cCH----HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 014172 302 KAFAMTGWRLGYIA--GPK----HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 302 K~~~~~G~R~G~v~--~~~----~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (429)
|.++++|+|+||++ +++ ++++.+....... .+++.+.|.++.++|+. ..++++++++.++++++++.+.|
T Consensus 245 K~~~~~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L 320 (406)
T 1xi9_A 245 KVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTG---PMDYLKEYMKKLKERRDYIYKRL 320 (406)
T ss_dssp TTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCccEEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 998 9999988776554 67889999999999975 35678899999999999999999
Q ss_pred ccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 376 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 376 ~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++||+++..|++++|+|++++...+ .+..+++++|++++||.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~l~~~~gi~v 364 (406)
T 1xi9_A 321 NEIPGISTTKPQGAFYIFPKIEVGPW---------KNDKEFVLDVLHNAHVLF 364 (406)
T ss_dssp HTSTTEECCCCCBSSEECCEECSCSC---------SSHHHHHHHHHHHHCEEC
T ss_pred HhCCCCeeecCCeeEEEEEecCccCC---------CCHHHHHHHHHHhCCEEE
Confidence 99889998889999999998874101 267899999986669975
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-48 Score=382.14 Aligned_cols=339 Identities=22% Similarity=0.361 Sum_probs=295.9
Q ss_pred cccccccCCchhHHHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~-~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+++++.++++++..+......+. ..|+++|+|+.|++++++|+.+.+++.+.+. ...+|++..|..++|+++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y~~~~g~~~lr~~la~~l~~ 81 (396)
T 3jtx_A 3 NTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLH-ELEKYPLTAGLPELRQACANWLKR 81 (396)
T ss_dssp HHHHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGG-GGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhh-hccCCCCCCCcHHHHHHHHHHHHH
Confidence 45677788888777766554433 3577899999999999999999999998875 457898888999999999999999
Q ss_pred hcCCC-CCCC-cEEEecChHHHHHHHHHHhcCCC-----CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHH
Q 014172 148 ENGLS-YTPD-QILVSNGAKQSILQAVLAVCSPG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV 220 (429)
Q Consensus 148 ~~g~~-~~~~-~i~~t~G~~~al~~~l~~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 220 (429)
.+|.+ ++++ +|++|+|+++++..++++++++| |+|+++.|+|.++...++..|++++.+++ .++++.+|++.
T Consensus 82 ~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~ 160 (396)
T 3jtx_A 82 RYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRS 160 (396)
T ss_dssp HTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGG
T ss_pred hcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHH
Confidence 99977 7788 99999999999999999999997 79999999999999999999999999998 44677889999
Q ss_pred HHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc----CCCCCCceEE
Q 014172 221 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS----LPGMWERTLT 296 (429)
Q Consensus 221 l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~----~~~~~~~~i~ 296 (429)
+++++++++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++..+.+... +....+++++
T Consensus 161 l~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 239 (396)
T 3jtx_A 161 ISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKY-GFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLM 239 (396)
T ss_dssp SCHHHHHTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-CCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEE
T ss_pred HHHhhccCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEE
Confidence 9999988999999999999999999999999999999999 9999999999999887643333221 2223688999
Q ss_pred EeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 014172 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (429)
Q Consensus 297 ~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (429)
+.||||.|+++|+|+||+++++++++.+.......+.+++.+.|.++.++|+. .+++++.++.++++++.+.+.|+
T Consensus 240 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~ 315 (396)
T 3jtx_A 240 FTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDD----EQHVIDNRRLYQEKFERVIPILQ 315 (396)
T ss_dssp EEESTTTSSCGGGCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeccccccCCcccceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777778999999999999985 67899999999999999999998
Q ss_pred cCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 377 ~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++ +.+..|++++|+|++++.. +..+++++|++++||.+
T Consensus 316 ~~--~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~gi~v 353 (396)
T 3jtx_A 316 QV--FDVKLPDASFYIWLKVPDG------------DDLAFARNLWQKAAIQV 353 (396)
T ss_dssp TT--SCCCCCSSSSEEEEECTTS------------CHHHHHHHHHHHHCEEC
T ss_pred hc--CCccCCCeeEEEEEECCCC------------CHHHHHHHHHHHCCEEE
Confidence 85 4566789999999999852 68899999988889986
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-48 Score=384.31 Aligned_cols=340 Identities=22% Similarity=0.365 Sum_probs=291.8
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++..++++.+..+...... ..|+++|+|+.|++++++++.+.+++.+.+.+. ..+|++..|..++|+++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 100 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKIE--HGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQR 100 (404)
T ss_dssp CHHHHTSCCCTTC-------C--CCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHHh--cCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 566777777766665444332 356679999999999888899999999887432 34687778999999999999998
Q ss_pred hcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+|.++++ ++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+++++ +++.+|+++|+++++
T Consensus 101 ~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~ 179 (404)
T 2o1b_A 101 QYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQII 179 (404)
T ss_dssp HHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHHH
T ss_pred HhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhhc
Confidence 88987776 7999999999999999999999999999999999999999999999999999875 567789999999988
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++++|++++|+||||.+++.+++++|+++|++| |++||+||+|.++.+++ .+.++..+....++++++.||||.+|+
T Consensus 180 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~g~ 257 (404)
T 2o1b_A 180 DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGT-DTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGYNM 257 (404)
T ss_dssp HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTS-SCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTTTC
T ss_pred cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhccC
Confidence 7899999999999999999999999999999999 99999999999988865 344555554334788999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+......+..+++.+.|.++.++|+. .+++++++++.++++++.+.+.|+++ |+++..+
T Consensus 258 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 333 (404)
T 2o1b_A 258 SGFRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNH---YDDFLEEQSNVFKTRRDRFEAMLAKA-DLPFVHA 333 (404)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEECC
T ss_pred chhheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhc-CCeecCC
Confidence 9999999999999999998877777778999999999999986 47889999999999999999999998 8988889
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|++++.. .+..+++++|++++||.+
T Consensus 334 ~~g~~~~~~~~~~-----------~~~~~l~~~l~~~~gi~v 364 (404)
T 2o1b_A 334 KGGIYVWLETPPG-----------YDSEQFEQFLVQEKSILV 364 (404)
T ss_dssp CBSSEEEEECCTT-----------CCHHHHHHHHHHHHCEEC
T ss_pred CcceEEEEeCCCC-----------CCHHHHHHHHHHHCCEEE
Confidence 9999999999742 267899999997779976
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=376.53 Aligned_cols=334 Identities=23% Similarity=0.373 Sum_probs=291.5
Q ss_pred ccCC-chhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCC
Q 014172 74 AVKP-SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGL 151 (429)
Q Consensus 74 ~~~~-~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~ 151 (429)
++++ +.+..+..........|+++|+|+.|++++++|+.+.+++.+.+.+. ..+|++..|..++|+++++++.+.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~ 82 (376)
T 2dou_A 3 RVPEPSVFLVVDEAKRKARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGV 82 (376)
T ss_dssp -CCCTHHHHHHHHHHHHHHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCccchHHHHHHHHHHhhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3455 66677777777666778899999999999888899999999887543 467866568899999999999988898
Q ss_pred CCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCc
Q 014172 152 SYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR 230 (429)
Q Consensus 152 ~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~ 230 (429)
+++++ +|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+|+ ++++.+|++.++++++++++
T Consensus 83 ~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~~ 160 (376)
T 2dou_A 83 GLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREAK 160 (376)
T ss_dssp CCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHEE
T ss_pred CCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCce
Confidence 77776 9999999999999999999999999999999999999999999999999998 45677899999998887899
Q ss_pred EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccce
Q 014172 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (429)
Q Consensus 231 ~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 310 (429)
+|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++ ...++..+.+..++++++.||||.+|++|+|
T Consensus 161 ~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 238 (376)
T 2dou_A 161 VLLLNYPNNPTGAVADWGYFEEALGLARKH-GLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSYNLAGFR 238 (376)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHHTCGGGC
T ss_pred EEEECCCCCCcCccCCHHHHHHHHHHHHHc-CCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhcCChhhe
Confidence 999999999999999999999999999999 99999999999988876 3334444433457899999999999999999
Q ss_pred eeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceE
Q 014172 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~ 390 (429)
+||+++++++++.+......++.+++.+.|.++.++|+. .++++++.++.++++++.+.+.|+++ +++.+|++|+
T Consensus 239 ~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~ 313 (376)
T 2dou_A 239 LGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKT---PKEVVRGYARVYRERALGMAEALKGV--LSLLPPRATM 313 (376)
T ss_dssp CEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTS---CHHHHHHHHHHHHHHHHHHHHHHTTT--SEECCCCBSS
T ss_pred eEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHh--cCccCCCeeE
Confidence 999999999999998877777777899999999999986 47889999999999999999999987 7888889999
Q ss_pred EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+|++++.. .+..+++++|+++ ||.+
T Consensus 314 ~~~~~~~~~-----------~~~~~~~~~l~~~-gi~v 339 (376)
T 2dou_A 314 YLWGRLPEG-----------VDDLEFGLRLVER-GVAL 339 (376)
T ss_dssp EEEEECCTT-----------CCHHHHHHHHHHT-TEEC
T ss_pred EEEEECCCC-----------CCHHHHHHHHHHC-CEEE
Confidence 999999742 2678999999988 9976
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=379.29 Aligned_cols=352 Identities=31% Similarity=0.524 Sum_probs=300.8
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHh
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
++++..++++.+.++.+.. .+.++|+|+.|+|++++|+.+.+++.+.+.+. ..+|++..|..++|+++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 76 (410)
T 3e2y_A 2 AKRIEGLDSNVWVEFTKLA-----ADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGK 76 (410)
T ss_dssp CGGGTTCCCCHHHHTTTTT-----TSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred chhhccCCccHHHHHHHHh-----cCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHH
Confidence 3566777777665554322 34579999999999999999999999988653 45898888999999999999999
Q ss_pred hcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC---------CCCCCCC
Q 014172 148 ENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI---------SENFLLD 217 (429)
Q Consensus 148 ~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---------~~~~~~d 217 (429)
.+|..+++ ++|++|+|+++++..++++++++||+|+++.|+|..+...++..|++++.+++++ +.++.+|
T Consensus 77 ~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d 156 (410)
T 3e2y_A 77 IYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFD 156 (410)
T ss_dssp HHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECC
T ss_pred HhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCC
Confidence 99988888 8999999999999999999999999999999999999999999999999999863 2456789
Q ss_pred HHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 218 ~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
++++++++++++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.|++....++..+....++++++
T Consensus 157 ~~~l~~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 235 (410)
T 3e2y_A 157 PRELESKFSSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKH-DTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITI 235 (410)
T ss_dssp HHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEE
T ss_pred HHHHHhhcCCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHc-CcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEE
Confidence 9999999998999999999999999999999999999999999 999999999999999887677777776667899999
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHHH
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERRDFLV 372 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~-----~~~~~~~~~~~~~~~~~~r~~l~ 372 (429)
.||||.+|++|+|+||+++++++++.+........++++.+.|.++..+|+. .. ..++++++++.++++++++.
T Consensus 236 ~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 314 (410)
T 3e2y_A 236 GSAGKTFSVTGWKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDD-PECYFNSLPKELEVKRDRMV 314 (410)
T ss_dssp EEHHHHSSCGGGCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS-TTSHHHHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998887777778899999999999873 11 25788999999999999999
Q ss_pred HHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 373 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 373 ~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.|+++ |+.+..|++++|+|++++..............++.+++.+|++++||.+
T Consensus 315 ~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v 369 (410)
T 3e2y_A 315 RLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTA 369 (410)
T ss_dssp HHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEEC
T ss_pred HHHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEE
Confidence 999998 9999899999999999875311000000000124589999988889986
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-47 Score=379.55 Aligned_cols=355 Identities=25% Similarity=0.455 Sum_probs=300.1
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc---CCCCCCCCCCCHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE---GFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~---~~~~Y~~~~G~~~lr~~ia 142 (429)
+.+++++..+.++.+..+.+... ..++|+|+.|.+++++|+.+.+++.+.+.. ....|++..|..++|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la 87 (429)
T 1yiz_A 13 FDLPKRYQGSTKSVWVEYIQLAA-----QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALS 87 (429)
T ss_dssp CCSSSSCCCCTTCHHHHHHHHHH-----HHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHH
T ss_pred cchhHHhhhCCchHHHHHHHHhc-----cCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHH
Confidence 45788888888876655544332 135899999999988899999999998865 3467988789999999999
Q ss_pred HHHHhhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC--------C
Q 014172 143 HKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE--------N 213 (429)
Q Consensus 143 ~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~ 213 (429)
+++.+.+|.+++++ +|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+|++.++ +
T Consensus 88 ~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 167 (429)
T 1yiz_A 88 KLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSAD 167 (429)
T ss_dssp HHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGG
T ss_pred HHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccC
Confidence 99998889777888 99999999999999999999999999999999999999999999999999987643 5
Q ss_pred CCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc
Q 014172 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 214 ~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+.+|++.|++++++++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.|++....++..+....++
T Consensus 168 ~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 246 (429)
T 1yiz_A 168 WVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 246 (429)
T ss_dssp CBCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTSCCCCGGGSTTTGGG
T ss_pred cccCHHHHHHHhccCceEEEECCCCCCCCccCCHHHHHHHHHHHHHc-CcEEEEeccccccccCCCCCcChhhccCCcCc
Confidence 67999999999988899999999999999999999999999999999 99999999999999877655666666444688
Q ss_pred eEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-----GYAGGEVVSKMVKAFRERR 368 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~-----~~~~~~~~~~~~~~~~~~r 368 (429)
++++.||||.+|++|+|+||+++++++++.+.......+++.+.+.|.++.++|+. +.. +++++++++.+++++
T Consensus 247 ~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 325 (429)
T 1yiz_A 247 TITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSP-ECYFNSISGELMAKR 325 (429)
T ss_dssp EEEEEEHHHHHTCGGGCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTST-TSHHHHHHHHHHHHH
T ss_pred eEEEecchhccCCCCcceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccch-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876666777899999999999986 432 678899999999999
Q ss_pred HHHHHHhccCCCceeecCCceEEEEEecCCccCCc-ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 369 ~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.+.|+++ |+++..|++|+|+|++++...... ........+..+++++|++++||.+
T Consensus 326 ~~l~~~L~~~-g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v 385 (429)
T 1yiz_A 326 DYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQG 385 (429)
T ss_dssp HHHHHHHHHH-TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHhC-CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEE
Confidence 9999999988 898888999999999997520000 0000000246789999987779986
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-47 Score=374.71 Aligned_cols=336 Identities=25% Similarity=0.449 Sum_probs=287.7
Q ss_pred ccCccccccc--CCchhHHHHHHHHHHHhc--CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC----CCCCCCCCCCHHH
Q 014172 66 VSLSPRVNAV--KPSKTVAITDQATALAQA--GVSVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTPNAGTLEL 137 (429)
Q Consensus 66 ~~~s~~~~~~--~~~~~~~~~~~~~~~~~~--g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~----~~~Y~~~~G~~~l 137 (429)
|.++++++.+ .++.++++...+.++... ++++|+|+.|+|++++|+.+.+++.+.+.+. ...|++..|..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~l 81 (398)
T 3ele_A 2 MVVNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVET 81 (398)
T ss_dssp CSSCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHH
T ss_pred cchhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHH
Confidence 4578889888 688888888877766543 4679999999999989999999999988764 4689888999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCC-CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCC
Q 014172 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (429)
Q Consensus 138 r~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 216 (429)
|+++++++.+.+|..+++++|++|+|+++++..++++++++| |+|+++.|+|.++...++..|++++.+|+++ +++.+
T Consensus 82 r~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~ 160 (398)
T 3ele_A 82 RAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQI 160 (398)
T ss_dssp HHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-TTSSC
T ss_pred HHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-cCCcC
Confidence 999999999999988899999999999999999999999999 9999999999999999999999999999875 36789
Q ss_pred CHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh------CCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 217 d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~------~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
|+++|++++++++++|++++||||||.+++.+++++|+++|++ | |++||+||+|.++.|++...+.... .
T Consensus 161 d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~---~ 236 (398)
T 3ele_A 161 DFDALEERINAHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGR-PIFIIADEPYREIVYDGIKVPFVTK---Y 236 (398)
T ss_dssp CHHHHHHTCCTTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECTTTTCBCTTCCCCCGGG---T
T ss_pred CHHHHHHHhCcCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCC-CeEEEEeccccccccCCCCcCChHh---h
Confidence 9999999999899999999999999999999999999999999 9 9999999999999887643333322 2
Q ss_pred CCceEEEeccChhcccccceeeEEEcCHHH------HHHHHHHhhc-ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHF------VAACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~------~~~l~~~~~~-~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
.+++++++||||.+|++|+|+||+++++++ .+.+...... ...+++.+.|.++..+++.. . .++.
T Consensus 237 ~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~-----~~~~ 308 (398)
T 3ele_A 237 YDNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGAT---G-----DINA 308 (398)
T ss_dssp CSSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCC---C-----CHHH
T ss_pred cCCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCH---H-----HHHH
Confidence 578999999999999999999999998874 3344433332 24567888888888777652 1 3577
Q ss_pred HHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++++++.+.|+++ |+++..|++++|+|++++.. +..++++.|. ++||.+
T Consensus 309 ~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~-~~gi~v 359 (398)
T 3ele_A 309 YKENRDLLYEGLTRI-GYHCFKPDGAFYMFVKALED------------DSNAFCEKAK-EEDVLI 359 (398)
T ss_dssp HHHHHHHHHHHHHHH-TCCEECCSBSSEEEEECSSS------------CHHHHHHHHH-TTTEEC
T ss_pred HHHHHHHHHHHHHHc-CCeecCCCeeEEEEEEcCCC------------CHHHHHHHHH-HCCEEE
Confidence 889999999999988 89999999999999999753 6788998775 459976
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=380.61 Aligned_cols=352 Identities=24% Similarity=0.391 Sum_probs=288.2
Q ss_pred ccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCC----CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD----FDTPVLIAEAGINAIREG-FTRYTPNAGTLELR 138 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~----~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr 138 (429)
|.+.++..... .+.+++.+.+..+....+++++|+|+.|+|+ +++|+.+.+++.+.+... ...|++..|..++|
T Consensus 24 w~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr 102 (427)
T 3dyd_A 24 WSVRPSDMAKK-TFNPIRAIVDNMKVKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSR 102 (427)
T ss_dssp CCCCCCC-----------------CCCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHH
T ss_pred cCcchhhHhhc-ccchHHHHHHHHhhcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHH
Confidence 55555544333 2334444444443323346678999999975 577899999999988764 46898899999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 139 SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 139 ~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
+++++++.+. |.++++++|++|+|+++++.+++..++++||+|+++.|+|.++...++..|++++.+++++++++.+|+
T Consensus 103 ~~la~~~~~~-~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 181 (427)
T 3dyd_A 103 EEIASYYHCP-EAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDL 181 (427)
T ss_dssp HHHHHHHCBT-TBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECH
T ss_pred HHHHHHHhhc-CCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCH
Confidence 9999999765 777788999999999999999999999999999999999999999999999999999998777788999
Q ss_pred HHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEe
Q 014172 219 KVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (429)
Q Consensus 219 e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (429)
+.+++.+++++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.|++....++..+.. ..++++++
T Consensus 182 ~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~~i~Deay~~~~~~g~~~~~~~~~~~-~~~vi~~~ 259 (427)
T 3dyd_A 182 KQLEYLIDEKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQ-CVPILADEIYGDMVFSDCKYEPLATLST-DVPILSCG 259 (427)
T ss_dssp HHHHSSCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTTTCBCSSCCCCCGGGGCS-SCCEEEEE
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcCchhhccCCCcCccHHHhCC-CCcEEEEe
Confidence 999999998899999999999999999999999999999999 9999999999999988766666666654 46789999
Q ss_pred ccChhcccccceeeEEEcC-------HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 014172 299 GFSKAFAMTGWRLGYIAGP-------KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (429)
Q Consensus 299 S~SK~~~~~G~R~G~v~~~-------~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l 371 (429)
||||.|+++|+|+||++++ +++++.+...... .++++.++|.++.++|+.. ..+++++++++++++++.+
T Consensus 260 S~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~--~~~~~~~~~~~~~~~~~~l 336 (427)
T 3dyd_A 260 GLAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQR-ILGPCTIVQGALKSILCRT--PGEFYHNTLSFLKSNADLC 336 (427)
T ss_dssp ESTTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH-HCCSCHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHH
T ss_pred eccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 4677777766443 4678999999999999842 3678999999999999999
Q ss_pred HHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 372 VKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 372 ~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.|+++||+++..|++++|+|++++... +....+..+++++|++++||.+
T Consensus 337 ~~~L~~~~g~~~~~p~~g~~~~~~l~~~~------~~~~~~~~~~~~~l~~~~gV~v 387 (427)
T 3dyd_A 337 YGALAAIPGLRPVRPSGAMYLMVGIEMEH------FPEFENDVEFTERLVAEQSVHC 387 (427)
T ss_dssp HHHHHHSTTEEEECCSBTTEEEEEECGGG------CTTCSSHHHHHHHHHHHHCEEC
T ss_pred HHHHhcCCCceecCCCeeEEEEEecCHhh------cCCCCCHHHHHHHHHHHCCEEE
Confidence 99999999999989999999999886310 0011367899999987779976
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=366.64 Aligned_cols=330 Identities=33% Similarity=0.565 Sum_probs=294.0
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+++++..++++.+.++...+.+....|+++|+|+.|.+++++|+.+.+++.+.+..+...|++..|..++|+++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~ 81 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQKLESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKD 81 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHHHHHTTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccHHHHHHHHHHHHHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHH
Confidence 56788888999888888888877777889999999999988889999999999877667898888999999999999999
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|+++++++|++|+|+++++..++++++++||+|++++|+|+++...++..|++++.++ +|++++++.+++
T Consensus 82 ~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~~ 153 (370)
T 2z61_A 82 KYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALSD 153 (370)
T ss_dssp HSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCCS
T ss_pred HhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhccc
Confidence 899888899999999999999999999999999999999999999999999999999987 589999999988
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
++++|++++|+||||.+++.+ |.++|++| |+++|+||+|.++.+++ ...++..+.+..++++++.||||.+|++
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~----l~~~~~~~-~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 227 (370)
T 2z61_A 154 KTKAIIINSPSNPLGEVIDRE----IYEFAYEN-IPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLYAMT 227 (370)
T ss_dssp SEEEEEEESSCTTTCCCCCHH----HHHHHHHH-CSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTTTCG
T ss_pred CceEEEEcCCCCCcCcccCHH----HHHHHHHc-CCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhccCCc
Confidence 899999999999999999955 99999999 99999999999988876 3445666544468899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
|+|+||+++++++++.+.........+++.+.|.++.++|+. + +++++++++.++++++++.+.|+++ |+++..|
T Consensus 228 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 303 (370)
T 2z61_A 228 GWRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKET---EREINSMIKEFDRRRRLVLKYVKDF-GWEVNNP 303 (370)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH---HHHHHHHHHHHHHHHHHHHHHHHHT-TCBCCCC
T ss_pred cceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCC
Confidence 999999999999999998877767778899999998888863 1 5678889999999999999999998 8988889
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|++++. +..+++++|++++||.+
T Consensus 304 ~~~~~~~~~~~~-------------~~~~~~~~l~~~~gi~v 332 (370)
T 2z61_A 304 IGAYYVFPNIGE-------------DGREFAYKLLKEKFVAL 332 (370)
T ss_dssp CBTTEECCBCSS-------------CHHHHHHHHHHHHCEEC
T ss_pred CcceEEEEecCC-------------CHHHHHHHHHHhCCEEE
Confidence 999999998863 47789999986669876
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=381.84 Aligned_cols=345 Identities=15% Similarity=0.166 Sum_probs=283.8
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCC---CCCCCCh--HHHHHHHHHHHHc-CCCCCCCCCCCHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGINAIRE-GFTRYTPNAGTLELRS 139 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g---~~~~~~p--~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~ 139 (429)
|++++++..++++.+..+...+... ..+++|+|+.| +|+..+| +.+.+++.+.+.+ ...+|++..|..++|+
T Consensus 22 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ 99 (420)
T 4f4e_A 22 MSLFSAVELAPRDPILGLNEAFNAD--TRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDA 99 (420)
T ss_dssp CCTTTTCCCCCCCHHHHHHHHHHHC--CCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHH
T ss_pred cCHhhcCCcCCCChHHHHHHHHHhc--CCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Confidence 5688999999999888887766543 34579999999 6776665 8999999998876 4568999999999999
Q ss_pred HHHHHHHhhcCCCCCCC--cEEEecChHHHHHHH--HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCC
Q 014172 140 AICHKLKEENGLSYTPD--QILVSNGAKQSILQA--VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215 (429)
Q Consensus 140 ~ia~~l~~~~g~~~~~~--~i~~t~G~~~al~~~--l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 215 (429)
++++++....+..++++ +|++|+|+++++..+ +.+++++||+|++++|+|.+|...++..|++++.+|+..++++.
T Consensus 100 ~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNG 179 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTE
T ss_pred HHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCc
Confidence 99999976555444677 899999999999998 45668999999999999999999999999999999985445688
Q ss_pred CCHHHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC-CCCccccCCCCC
Q 014172 216 LDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMW 291 (429)
Q Consensus 216 ~d~e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~-~~~~~~~~~~~~ 291 (429)
+|++.+++.++ ++++++++++||||||.+++.+++++|+++|++| |+++|+||+|.++.|++. ...++..+....
T Consensus 180 ~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 258 (420)
T 4f4e_A 180 VNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKAR-RLVPFLDIAYQGFGESIEADAAAVRLFAAAN 258 (420)
T ss_dssp ECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTT
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CcEEEEccccccccCCcchhhHHHHHHHhcC
Confidence 99999999997 6788999999999999999999999999999999 999999999999998752 234455444446
Q ss_pred CceEEEeccChhcccccceeeEEEc---CHHHHHH----HHHHhhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTGWRLGYIAG---PKHFVAA----CNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMV 361 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G~R~G~v~~---~~~~~~~----l~~~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~ 361 (429)
+++++++||||.||++|+|+||+++ ++++++. +.........+++.+.|.++..++..... .++++++++
T Consensus 259 ~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 338 (420)
T 4f4e_A 259 LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMR 338 (420)
T ss_dssp CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999863 4565544 33333445566889999999888875210 035688899
Q ss_pred HHHHHHHHHHHHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 362 KAFRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
++|+++|+.+.+.|+++ +|+.+..|++|||+|++++ . +.+.++++++||.+.
T Consensus 339 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~-~~~~~~l~~~gI~v~ 393 (420)
T 4f4e_A 339 DRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLT---------------S-AQVDRLREEFGIYAV 393 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCC---------------H-HHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCC---------------H-HHHHHHHHhCCEEec
Confidence 99999999999999986 4788888999999998763 3 345566667799863
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=372.82 Aligned_cols=338 Identities=27% Similarity=0.504 Sum_probs=299.6
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+++++.+++++.+.++...+.++...|+++|+|+.|.+++++|+.+.+++ +.+.++...|++..|..++|+++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~ 94 (409)
T 2gb3_A 16 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKR 94 (409)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCccHHHHHHHHHHHHHhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 78999999999888888888887778889999999999888888999999 88766566898888999999999999998
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|+++++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+|+++++++.+ ++.|++++++
T Consensus 95 ~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~~ 173 (409)
T 2gb3_A 95 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFINE 173 (409)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCCT
T ss_pred HhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhCc
Confidence 888888889999999999999999999999999999999999999999999999999999875455656 8999999988
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.+++ ...++ +....+++++++||||.+|++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~Dea~~~~~~~~-~~~~~--~~~~~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRG-EFASA--LSIESDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSS-CCCCG--GGSCCTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHc-CCEEEEECcccccccCC-CCCCc--cccCCCCEEEEecchhccCCc
Confidence 899999999999999999999999999999999 99999999999988865 23333 222246789999999999999
Q ss_pred cceeeEEEcCH-HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-ec
Q 014172 308 GWRLGYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SE 385 (429)
Q Consensus 308 G~R~G~v~~~~-~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~~ 385 (429)
|+|+||+++++ ++++.+......+. +++.+.|.++.++|+. ..++++++++.++++++++.+.|+++ |+++ ..
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~ 324 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEH-GLKRFTK 324 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCBCC
T ss_pred cceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHHc-CceeeeC
Confidence 99999999998 99999888766666 7899999999999976 47789999999999999999999998 8888 78
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHh-----CCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK-----AQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~-----~gV~v 428 (429)
|++++|+|++++. .+..+++++|+++ +||.+
T Consensus 325 ~~~~~~~~~~~~~------------~~~~~l~~~l~~~~~~~~~gi~v 360 (409)
T 2gb3_A 325 PSGAFYITAELPV------------EDAEEFARWMLTDFNMDGETTMV 360 (409)
T ss_dssp CSBSSEEEEECSS------------SCHHHHHHHHHHSCCBTTEEEEC
T ss_pred CCeeEEEEEEeCC------------CCHHHHHHHHHhccccccCcEEE
Confidence 8999999999873 2688999999887 68875
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=376.89 Aligned_cols=343 Identities=20% Similarity=0.272 Sum_probs=284.0
Q ss_pred cccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHH--HHHHH---------HHHHHcCCCCCCCC
Q 014172 63 QVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVL--IAEAG---------INAIREGFTRYTPN 131 (429)
Q Consensus 63 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~--v~~a~---------~~~~~~~~~~Y~~~ 131 (429)
++...+|++++.++++.+.++.+.+.. .++++|+|+.|.|+..++|. +..++ ..... ...+|++.
T Consensus 2 ~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~ 77 (425)
T 2r2n_A 2 NYARFITAASAARNPSPIRTMTDILSR---GPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMK-RALQYSPS 77 (425)
T ss_dssp CGGGGSCHHHHTCCCCSGGGHHHHHHH---SCTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHH-HHTSCCCT
T ss_pred chhHHHHHHHhcCCCchHHHHHHHhhc---CCCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchh-hhcCCCCC
Confidence 345568999999999998888776653 23579999999998665331 00000 11111 12579999
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCC-------CCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEE
Q 014172 132 AGTLELRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPV 204 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~-------~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 204 (429)
.|.++||++|++++.+.+|.+.+ +++|++|+|+++++.+++++++++||+|++++|+|.++...++..|++++
T Consensus 78 ~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~ 157 (425)
T 2r2n_A 78 AGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNII 157 (425)
T ss_dssp TCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEE
Confidence 99999999999999998997664 37999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCHHHHHhhcc------------cCCcEEEE-cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCC
Q 014172 205 ILPTRISENFLLDPKVLESKLT------------EKSRLLIL-CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY 271 (429)
Q Consensus 205 ~v~~~~~~~~~~d~e~l~~~l~------------~~~~~i~l-~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay 271 (429)
.++++.+ .+|++.|++.++ +++++|++ ++||||||.+++.+++++|+++|++| |++||+||+|
T Consensus 158 ~v~~~~~---~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~-~~~li~De~~ 233 (425)
T 2r2n_A 158 NVASDES---GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKY-DFLIIEDDPY 233 (425)
T ss_dssp EECEETT---EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTT
T ss_pred EeCcCCC---CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCc
Confidence 9998642 389999999886 46888876 79999999999999999999999999 9999999999
Q ss_pred cccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc--
Q 014172 272 EHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-- 349 (429)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~-- 349 (429)
.++.|++....++..+.. .+++++++||||.++ +|+|+||+++++++++.+.........+++.++|.++..+|+.
T Consensus 234 ~~~~~~g~~~~~~~~~~~-~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~ 311 (425)
T 2r2n_A 234 YFLQFNKFRVPTFLSMDV-DGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWG 311 (425)
T ss_dssp GGGBSSSSCCCCTGGGCT-TSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCccccCC-CCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Confidence 999998766667777653 578999999999999 9999999999999999998887777778999999999999874
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCc-eeecCCceEEEEEecCCccCCcccCCCCCCChHHH-HHHHHHhCC
Q 014172 350 -GYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGV-KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL-CRYLLDKAQ 425 (429)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~-~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~Ll~~~g 425 (429)
+. ..++++++++.|+++|+.+.+.|++ ++|+ .+..|++|+|+|++++.. .++.++ .+.| .++|
T Consensus 312 ~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~-----------~~~~~~~~~~l-~~~g 378 (425)
T 2r2n_A 312 EEG-FMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGI-----------NDVKELIEEKA-VKMG 378 (425)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTC-----------SCCHHHHHTHH-HHTT
T ss_pred cch-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCC-----------CCHHHHHHHHH-HHCC
Confidence 11 1467888999999999999999988 6776 567899999999999853 245565 5555 4669
Q ss_pred eec
Q 014172 426 VLL 428 (429)
Q Consensus 426 V~v 428 (429)
|.+
T Consensus 379 v~v 381 (425)
T 2r2n_A 379 VLM 381 (425)
T ss_dssp EEC
T ss_pred cEE
Confidence 986
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=378.56 Aligned_cols=339 Identities=23% Similarity=0.388 Sum_probs=292.2
Q ss_pred ccCcccccccCCc-hhHHHHHHHHHHHh--cCCCeEEcCCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCCCCHHH
Q 014172 66 VSLSPRVNAVKPS-KTVAITDQATALAQ--AGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLEL 137 (429)
Q Consensus 66 ~~~s~~~~~~~~~-~~~~~~~~~~~~~~--~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~~l 137 (429)
..++++++.+++. .+..+..+...... .|+++|+|+.|++++++|+.+.+++.+++. .....|++..|..+|
T Consensus 37 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l 116 (449)
T 3qgu_A 37 VQRNENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGAL 116 (449)
T ss_dssp CCCCHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHH
T ss_pred hhhhHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHH
Confidence 3567788888874 45566665554443 377899999999999999999999999887 456689888999999
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCE----------EEEec
Q 014172 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT----------PVILP 207 (429)
Q Consensus 138 r~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~----------~~~v~ 207 (429)
|+++++++. +|+.+++++|++|+|+++++..+ ..++++||+|++++|+|.++...++..|++ ++.++
T Consensus 117 r~~ia~~~~--~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 193 (449)
T 3qgu_A 117 REAVASTFY--GHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMV 193 (449)
T ss_dssp HHHHHHHHH--TTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEE
T ss_pred HHHHHHHHH--cCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEe
Confidence 999999997 78778899999999999999988 888999999999999999999999999999 99999
Q ss_pred CCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 208 ~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
++.++++..|++++ +++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++..+.++..+
T Consensus 194 ~~~~~~~~~~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~ 267 (449)
T 3qgu_A 194 CNPDNHFFPDLSKA-----KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKN-GSILVYDAAYALYISNPDCPKTIYEI 267 (449)
T ss_dssp CCGGGTTCCCGGGC-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCCTTSCSSGGGS
T ss_pred cccccCCcCChhHc-----CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchHhhhcCCCCCCCHhhc
Confidence 98766666666542 5789999999999999999999999999999999 99999999999999887666677777
Q ss_pred CCCCCceEEEeccChhcccccceeeEEEcCHHHHH--------HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--------ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~--------~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
....++++++.||||.+|++|+|+||+++++++++ .+.........+++.++|.++.+++... ..+++++
T Consensus 268 ~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~ 345 (449)
T 3qgu_A 268 PGADEVAIETCSFSKYAGFTGVRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPE--GLKEMNA 345 (449)
T ss_dssp TTGGGTEEEEEECSGGGTCTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHH--HHHHHHH
T ss_pred cCCCCcEEEEecchhhcCCccceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhc--CHHHHHH
Confidence 65568899999999999999999999999988765 4555555555678999999999988741 1467889
Q ss_pred HHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 360 MVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.++++++++.+.|+++ |+++..+++++|+|++++. .++.+++++|++++||.+
T Consensus 346 ~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gI~v 401 (449)
T 3qgu_A 346 MIKFYKENAQILKTTFTEM-GFSVYGGDDAPYIWVGFPG------------KPSWDVFAEILERCNIVT 401 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCEEESSSSSEEEEECTT------------SCHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeeeCCCCeeEEEEECCC------------CCHHHHHHHHHHHCCEEE
Confidence 9999999999999999998 8999889999999999983 278899999999889986
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=365.97 Aligned_cols=348 Identities=22% Similarity=0.365 Sum_probs=297.9
Q ss_pred ccccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHH
Q 014172 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLE 136 (429)
Q Consensus 62 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~ 136 (429)
|++...+++++..+.++.+..+...+.++..+|+++|+|+.|.|+.. +++.+.+++.+.+.+. .. |++..|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~ 79 (407)
T 2zc0_A 1 MDYTKYLAGRANWIKGSALADVMKKASELQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPE 79 (407)
T ss_dssp CCGGGGSCGGGGGCCCCHHHHHHHHHHHHHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHH
T ss_pred CcchhhhhhhhccCCchHHHHHHHhhhcccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHH
Confidence 34444578899999998888877776655456778999999987654 5788999999888653 35 888889999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCC
Q 014172 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (429)
Q Consensus 137 lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 216 (429)
+|+++++++.+.+|.++++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+|++++ .+
T Consensus 80 l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~---~~ 156 (407)
T 2zc0_A 80 LREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDND---GM 156 (407)
T ss_dssp HHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EE
T ss_pred HHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCCC---CC
Confidence 999999999888887778899999999999999999999999999999999999999999999999999998643 28
Q ss_pred CHHHHHhhcc----c--CCcEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 217 DPKVLESKLT----E--KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 217 d~e~l~~~l~----~--~~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
|++.|+++++ + ++++|+ +++|+||||.+++.+++++|+++|++| |+++|+||+|..+.+++....++..+..
T Consensus 157 d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~ 235 (407)
T 2zc0_A 157 RVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKY-DLLIIEDTAYNFMRYEGGDIVPLKALDN 235 (407)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBSSCSSCCCGGGGCS
T ss_pred CHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEECCCcccccCCCCCCChhhcCC
Confidence 9999999987 5 788875 789999999999999999999999999 9999999999998887655555666543
Q ss_pred CCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERR 368 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~-~~~~~~~~~~~~~r 368 (429)
.+++++++||||.++ +|+|+||+++++++++.+......++.+++.+.|.++.++++.... + +++++.++.+++++
T Consensus 236 -~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~ 312 (407)
T 2zc0_A 236 -EGRVIVAGTLSKVLG-TGFRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYF-EKYHLEGALLGYKEKR 312 (407)
T ss_dssp -SCCEEEEEESTTTTC-TTSCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHH-HHHTTTTHHHHHHHHH
T ss_pred -CCCEEEEcccccccC-CCcceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHH
Confidence 468999999999999 9999999999999999998887777777899999999999986211 3 56778899999999
Q ss_pred HHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 369 DFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 369 ~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.+.|++ ++++++..|.+++|+|++++.. .+..+++++|++++||.+
T Consensus 313 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~~gi~v 362 (407)
T 2zc0_A 313 DIMLKALENHLPNAEFTKPIAGMFVMFFLPEG-----------ADGISFANELMEREGVVV 362 (407)
T ss_dssp HHHHHHHHHHCTTSCBCCCSBSSEEEEECSTT-----------CCHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHHHhCCCCEEecCCCcEEEEEEcCCC-----------CCHHHHHHHHHHhCCeEE
Confidence 999999987 5788887888999999999742 268899999998879876
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-46 Score=383.59 Aligned_cols=355 Identities=20% Similarity=0.332 Sum_probs=278.7
Q ss_pred CcccccccCCchhHHHHHHHHHHHhc---CC-----CeEEcCCCCCC---CCC----------------------hHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQA---GV-----SVIRLAAGEPD---FDT----------------------PVLIA 114 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~---g~-----~~i~L~~g~~~---~~~----------------------p~~v~ 114 (429)
+++++.++.......+..++.++++. |. ++|++++|+|. ..+ |..+.
T Consensus 28 ~~~~~~~~~y~~rg~~~~~a~~~~~~~~~g~~~~f~~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~ 107 (498)
T 3ihj_A 28 MNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAK 107 (498)
T ss_dssp ETTEEEEEEEEECCHHHHHHHHHHHHHHTTCCCSSSSCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHH
T ss_pred HHHHHHHhhhhhcCHHHHHHHHHHHHHhccCCCchhhhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHH
Confidence 67777777655555677777777664 44 79999999982 222 55556
Q ss_pred HHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHhhc-CCCCCCCcEEEecChHHHHHHHHHHhcCCCC----EEEEc
Q 014172 115 EAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEEN-GLSYTPDQILVSNGAKQSILQAVLAVCSPGD----EVIIP 185 (429)
Q Consensus 115 ~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~-g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd----~Vlv~ 185 (429)
+++.+++.+ ....|++..|..++|++|++++.+.+ |+++++++|++|+|+++++..++++++++|| .|+++
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~ 187 (498)
T 3ihj_A 108 KRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIP 187 (498)
T ss_dssp HHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEE
T ss_pred HHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEe
Confidence 666777664 24679999999999999999999888 4888899999999999999999999999875 99999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-----CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhC
Q 014172 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (429)
Q Consensus 186 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-----~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~ 260 (429)
.|+|+.|...++..|++++.++++++++|.+|+++|++++++ ++++|++++||||||.+++.+++++|+++|++|
T Consensus 188 ~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~ 267 (498)
T 3ihj_A 188 IPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEE 267 (498)
T ss_dssp ESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHc
Confidence 999999999999999999999998888899999999999976 589999999999999999999999999999999
Q ss_pred CCeEEEEccCCcccccCCC-CCCccccCCC-------CCCceEEEeccChhc-ccccceeeEEE---cCHHHHHHHHHHh
Q 014172 261 PRLLVLSDEIYEHIIYAPA-THTSFASLPG-------MWERTLTVNGFSKAF-AMTGWRLGYIA---GPKHFVAACNKIQ 328 (429)
Q Consensus 261 ~~i~vi~Deay~~~~~~~~-~~~~~~~~~~-------~~~~~i~~~S~SK~~-~~~G~R~G~v~---~~~~~~~~l~~~~ 328 (429)
+++||+||+|..+.|++. .+.++..+.. ...++|+++||||.| |++|+|+||++ .++++++.+.+..
T Consensus 268 -~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~ 346 (498)
T 3ihj_A 268 -KLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL 346 (498)
T ss_dssp -TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH
T ss_pred -CcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH
Confidence 999999999999999764 4555554321 124579999999999 89999999998 6899999988776
Q ss_pred hcccCCCchHHHHHHHHHHhcCC----CChHH---HHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC
Q 014172 329 SQFTSGASSISQKAGVAALGLGY----AGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (429)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~l~~~~----~~~~~---~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~ 401 (429)
. ...+++.++|.++..+++... ...++ ...+++.++++++++.+.|+++||+++.+|+++||+|++++....
T Consensus 347 ~-~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~p~gg~~~~~~l~~p~~ 425 (498)
T 3ihj_A 347 S-VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIHCNPLQGAMYAFPRIFIPAK 425 (498)
T ss_dssp H-HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBSSEECCEECCCHH
T ss_pred h-ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEecCCCeEEEEEEeccCchh
Confidence 5 556789999998888886311 01233 456788999999999999999999999999999999987642100
Q ss_pred C----cccCCCCCCChHHH-HHHHHHhCCeec
Q 014172 402 S----EAEGFGKIENSESL-CRYLLDKAQVLL 428 (429)
Q Consensus 402 ~----~~~~~~~~~~~~~~-~~~Ll~~~gV~v 428 (429)
. ...+ .+..++ +.+|++++||.+
T Consensus 426 ~~~~~~~~g----~~~~~~~~~~ll~~~gI~v 453 (498)
T 3ihj_A 426 AVEAAQAHQ----MAPDMFYCMKLLEETGICV 453 (498)
T ss_dssp HHHHHHHTT----SCHHHHHHHHHHHHHCBCC
T ss_pred hhHHHHhcC----CCcHHHHHHHHHHHCCEEE
Confidence 0 0001 134454 788888889986
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-46 Score=366.26 Aligned_cols=315 Identities=21% Similarity=0.342 Sum_probs=283.5
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
..|+++|+|+.|++++++|+.+.+++.+.+.++...|++ .| .++|+++++++.+.+|..+++++|++|+|+++++..+
T Consensus 20 ~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~ 97 (377)
T 3fdb_A 20 RYGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIA 97 (377)
T ss_dssp SSCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHH
T ss_pred ccCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHH
Confidence 357889999999999999999999999999877778987 77 8999999999999999888899999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
+++++++||+|+++.|+|.++...++..|++++.+|++.+ +|+++++++++++++++++++|+||||.+++.++++
T Consensus 98 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~ 173 (377)
T 3fdb_A 98 IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQAGARSILLCNPYNPLGMVFAPEWLN 173 (377)
T ss_dssp HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHTTCCEEEEESSBTTTTBCCCHHHHH
T ss_pred HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhccCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999998653 899999999998899999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCC-CCCCccccCCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhh
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQS 329 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~-~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~ 329 (429)
+|+++|++| |+++|+||+|..+.+++ ....++..+.. .++++++.||||.+|++|+|+||+++ ++++++.+.....
T Consensus 174 ~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 251 (377)
T 3fdb_A 174 ELCDLAHRY-DARVLVDEIHAPLVFDGQHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQIIFSNPSDAEHWQQLSP 251 (377)
T ss_dssp HHHHHHHHT-TCEEEEECTTGGGBSSSCCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEECCSHHHHHHHHHSCH
T ss_pred HHHHHHHHc-CCEEEEEcccchhhcCCCCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEEeCCHHHHHHHHHHHH
Confidence 999999999 99999999999998877 55555555433 57889999999999999999999886 7889999888766
Q ss_pred cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCCC
Q 014172 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 330 ~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
..+.+++.++|.++.++++. .+++++++++.++++++.+.+.|++ +||+++..|++++++|++++..
T Consensus 252 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~--------- 319 (377)
T 3fdb_A 252 VIKDGASTLGLIAAEAAYRY---GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQATYLMWIDFRDT--------- 319 (377)
T ss_dssp HHHCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSBCSEEEEECTTS---------
T ss_pred hhcCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCeeEEEEEECccc---------
Confidence 66678999999999999987 4788999999999999999999998 7899999999999999999853
Q ss_pred CCCChHHHHHHHHHhCCeec
Q 014172 409 KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+.+++++|++++||.+
T Consensus 320 --~~~~~~~~~l~~~~gi~v 337 (377)
T 3fdb_A 320 --TIEGSPSEFFIEKAKVAM 337 (377)
T ss_dssp --CCCSCHHHHHHHHHCEEC
T ss_pred --CCCHHHHHHHHHhCCEEe
Confidence 123578899998889976
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=366.89 Aligned_cols=324 Identities=21% Similarity=0.326 Sum_probs=282.9
Q ss_pred cCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC
Q 014172 75 VKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
++++.+.++.+..+++...| ++|+|+.|++++++|+.+.+++.+.+ .....|++..|..++|+++++++.+.+|.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~g-~~i~l~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~ 81 (376)
T 3ezs_A 4 FEPYPFERLRALLKEITPKK-RGLDLGIGEPQFETPKFIQDALKNHT-HSLNIYPKSAFEESLRAAQRGFFKRRFKIELK 81 (376)
T ss_dssp CCCCHHHHHHHHHTTCCCSS-CCCBCSSCCCCSCCCHHHHHHHHTTG-GGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCC
T ss_pred CCcchHHHHHHHHHhhhccC-CEEEeCCCCCCCCCCHHHHHHHHHhh-hhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCC
Confidence 46777778777776665567 89999999999999999999998876 34578988889999999999999999998778
Q ss_pred CCcEEEecChHHHHHHHHHHhcCC--CCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEE
Q 014172 155 PDQILVSNGAKQSILQAVLAVCSP--GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLL 232 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i 232 (429)
+++|++|+|+++++..++++++++ ||+|+++.|+|.++...++..|++++.++++.++++ ++ .+++.+.+++++|
T Consensus 82 ~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~-~l~~~~~~~~~~v 158 (376)
T 3ezs_A 82 ENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDF--TP-SLNEKELQEVDLV 158 (376)
T ss_dssp GGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTS--CC-CCCHHHHHHCSEE
T ss_pred HHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCc--ch-hHHhhhccCCCEE
Confidence 999999999999999999999999 999999999999999999999999999999766554 33 6666677789999
Q ss_pred EEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC-----CCCceEEEeccChhcccc
Q 014172 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-----MWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 233 ~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~-----~~~~~i~~~S~SK~~~~~ 307 (429)
++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++ ...++..... ..++++++.||||.+|++
T Consensus 159 ~~~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 159 ILNSPNNPTGRTLSLEELISWVKLALKH-DFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEcCCCCCcCCCCCHHHHHHHHHHHHHc-CcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 9999999999999999999999999999 99999999999998876 3334433211 368899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+.........+++.+.|.++.++++. .+++++.++.++++++.+.+.|+ ++. .|.
T Consensus 237 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~---~~~--~~~ 307 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLD----DRHAEFFRNIYANNLKLARKIFK---NTL--IYP 307 (376)
T ss_dssp GGCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHC----SHHHHHHHHHHHHHHHHHHHHST---TCC--CCS
T ss_pred cceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHhc---CCC--CCC
Confidence 999999999999999999887777778999999999999986 56789999999999999999997 554 688
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++|+|++++ +..+++++|++++||.+
T Consensus 308 ~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v 334 (376)
T 3ezs_A 308 YSFYVYLPVQ--------------NGENFAKTLYQNEGIIT 334 (376)
T ss_dssp BSSEEEEECS--------------CHHHHHHHHHHHHCCBC
T ss_pred cceEEEEECC--------------CHHHHHHHHHHhCCEEE
Confidence 9999999986 47799999998669876
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=371.04 Aligned_cols=336 Identities=19% Similarity=0.221 Sum_probs=291.4
Q ss_pred ccCCchhHHHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHHHHhhcCC
Q 014172 74 AVKPSKTVAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHKLKEENGL 151 (429)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~-~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~l~~~~g~ 151 (429)
.++++.++.+......+. ..|+++|+|+.|++++++|+.+.+++.+.+.++. .+|++..|..++|+++++++.+.+|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~ 101 (437)
T 3g0t_A 22 DLGMASIRDLVALVTNLEKATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNI 101 (437)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred cCCCcHHHHHHHHHHHHHHhcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCC
Confidence 344555666666665543 4578899999999999999999999999987665 78988889999999999999999999
Q ss_pred CCCCCcEEEecChHHHHHHHHHHhc--CCCC--EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc-c
Q 014172 152 SYTPDQILVSNGAKQSILQAVLAVC--SPGD--EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-T 226 (429)
Q Consensus 152 ~~~~~~i~~t~G~~~al~~~l~~l~--~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l-~ 226 (429)
++++++|++|+|+++++.+++++++ ++|| +|+++.|+|.++...++..|++++.++++ ++++.+|++.|++++ +
T Consensus 102 ~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~ 180 (437)
T 3g0t_A 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT 180 (437)
T ss_dssp CCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT
T ss_pred CCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc
Confidence 8889999999999999999999999 9999 99999999999999999999999999987 456778999999999 7
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCC----cc-ccCCCCCCceEEEeccC
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT----SF-ASLPGMWERTLTVNGFS 301 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~----~~-~~~~~~~~~~i~~~S~S 301 (429)
+++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++.... ++ ..+....++++++.|||
T Consensus 181 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~s 259 (437)
T 3g0t_A 181 GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKH-DVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSS 259 (437)
T ss_dssp TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEEST
T ss_pred CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHC-CcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCc
Confidence 7899999999999999999999999999999999 999999999999888742211 11 44443468899999999
Q ss_pred hhcccccceeeEEEcCHHHHH-H-----------------HHHHhhcccCCCchHHHHHHHHHHhcCCCChHH---HHHH
Q 014172 302 KAFAMTGWRLGYIAGPKHFVA-A-----------------CNKIQSQFTSGASSISQKAGVAALGLGYAGGEV---VSKM 360 (429)
Q Consensus 302 K~~~~~G~R~G~v~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~---~~~~ 360 (429)
|.+|++|+|+||+++++++++ . +.........+++.++|.++..+|+. ...+ ++++
T Consensus 260 K~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~ 336 (437)
T 3g0t_A 260 KAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKA---CNDGEYNFRDS 336 (437)
T ss_dssp TTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHH---HHTTSCCHHHH
T ss_pred cCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhC---cHhHHHHHHHH
Confidence 999999999999999999988 7 76666666678999999999999986 2333 8899
Q ss_pred HHHHHHHHHHHHHHhccCCCceee------cC-CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 361 VKAFRERRDFLVKSFGELEGVKMS------EP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 361 ~~~~~~~r~~l~~~L~~l~g~~~~------~p-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++++++++.+.+.|+++ |+++. .| .+++|+|++++. .+..+++++|+++ ||.+
T Consensus 337 ~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~L~~~-gi~v 397 (437)
T 3g0t_A 337 VIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPLADGFYFTVGYKG------------MDSSKLIEKFVRY-GMCA 397 (437)
T ss_dssp HHHHHHHHHHHHHHHHTT-TEEESSCEETTEECCSSSEEEEEETT------------CCHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHHHHHHHHHHHc-CCEEeccccCCCCCceeEEEEEecCC------------CCHHHHHHHHHHc-CeEE
Confidence 999999999999999999 88887 34 899999999983 2788999999876 9876
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=367.14 Aligned_cols=319 Identities=23% Similarity=0.335 Sum_probs=285.2
Q ss_pred CeEEcCCCCCC-CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHHHHHHH
Q 014172 96 SVIRLAAGEPD-FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAV 172 (429)
Q Consensus 96 ~~i~L~~g~~~-~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al~~~l 172 (429)
.+|+|+.|++. +++|+.+++++.+.+.+. ...|++..|..++++++++++.+.+|.++++ ++|++|+|+++++..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 38999999866 778899999999988753 3468888899999999999999999987766 79999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC----CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKN 248 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~ 248 (429)
.+++++||+|+++.|+|.++...++..|++++.++++. ++++.+|++.|++++++++++|++++||||||.+++.+
T Consensus 120 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~nptG~~~~~~ 199 (407)
T 3nra_A 120 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFSNPNNPAGVVYSAE 199 (407)
T ss_dssp HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEESSCTTTCCCCCHH
T ss_pred HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEcCCCCCCCcccCHH
Confidence 99999999999999999999999999999999999843 35677999999999988999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC-CCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH
Q 014172 249 LLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI 327 (429)
Q Consensus 249 ~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~ 327 (429)
++++|+++|++| |+++|+||+|..+.|++....++..+. ...++++++.||||.+|++|+|+||+++++++++.+...
T Consensus 200 ~l~~i~~~~~~~-~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~ 278 (407)
T 3nra_A 200 EIGQIAALAARY-GATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFGSRAIIARMEKL 278 (407)
T ss_dssp HHHHHHHHHHHH-TCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHHHH
Confidence 999999999999 999999999999999877666776665 457899999999999999999999999999999999988
Q ss_pred hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCC
Q 014172 328 QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 407 (429)
Q Consensus 328 ~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~ 407 (429)
...+..+++.+.|.++..+|+. ..+++++.+++++++++.+.+.|++++|+++..|++++|+|++++.. +
T Consensus 279 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~-~------ 348 (407)
T 3nra_A 279 QAIVSLRAAGYSQAVLRGWFDE---APGWMEDRIARHQAIRDELLHVLRGCEGVFARTPQAGSYLFPRLPKL-A------ 348 (407)
T ss_dssp HHHHTSSSCHHHHGGGGGTTCC---CTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCCCSBSSEECCBCCCB-S------
T ss_pred HhhhccCCChHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCeeEEEEEeCCCC-C------
Confidence 8888888889999888888875 45788899999999999999999999899998899999999999752 0
Q ss_pred CCCCChHHHHHHHHHhCCeec
Q 014172 408 GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 408 ~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 349 ---~~~~~~~~~l~~~~gi~v 366 (407)
T 3nra_A 349 ---VAPAEFVKILRLQAGVVV 366 (407)
T ss_dssp ---SCHHHHHHHHHHHHCEEC
T ss_pred ---CCHHHHHHHHHHhCCEEE
Confidence 368899999988779976
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-45 Score=359.93 Aligned_cols=320 Identities=18% Similarity=0.285 Sum_probs=284.9
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.|+++|+|+.|++++++|+.+.+++.+.+.+....|++. ..++++++++++.+.+|.++++++|++|+|+++++..++
T Consensus 25 ~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~ 102 (391)
T 3dzz_A 25 LKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMV 102 (391)
T ss_dssp CCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHH
T ss_pred cCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHH
Confidence 456899999999999999999999999988766778664 699999999999999998888999999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC-CCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
.+++++||+|+++.|+|.++...++..|++++.+|++ .+++|.+|++.|+++++ +++++|++++|+||||.+++.+++
T Consensus 103 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l 182 (391)
T 3dzz_A 103 RQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEV 182 (391)
T ss_dssp HHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHH
T ss_pred HHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHH
Confidence 9999999999999999999999999999999999986 34557789999999998 789999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHh
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQ 328 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~ 328 (429)
++|+++|++| |+++|+||+|.++.+.+....++..+... .++++++.||||.+|++|+|+||++++ +++++.+....
T Consensus 183 ~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 261 (391)
T 3dzz_A 183 KRIAELCAKH-QVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNPDLRARAEESF 261 (391)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCHHHHHHHHHHH
Confidence 9999999999 99999999999999887666677666532 478999999999999999999999997 89999888765
Q ss_pred hc-ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccC
Q 014172 329 SQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (429)
Q Consensus 329 ~~-~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~ 406 (429)
.. ...+++.+.+.++.+++.. ..+++++.++.++++++++.+.|++ ++|+++..|++++++|++++.. +
T Consensus 262 ~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 332 (391)
T 3dzz_A 262 FLAGIGEPNLLAIPAAIAAYEE---GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNASYLAWVDISAL-G----- 332 (391)
T ss_dssp HHHTCSSCCTTHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCBSSEEEEECGGG-C-----
T ss_pred HhhccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCceEEEEEehhhc-C-----
Confidence 43 3356888999999999987 5788999999999999999999999 8999999999999999999752 0
Q ss_pred CCCCCChHHHHHHHHHhCCeec
Q 014172 407 FGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 407 ~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 333 ----~~~~~~~~~l~~~~gi~v 350 (391)
T 3dzz_A 333 ----MNAEDFCKYLREKTGLII 350 (391)
T ss_dssp ----SCHHHHHHHHHHHHCEEC
T ss_pred ----CCHHHHHHHHHHhCCEEE
Confidence 268899999986669976
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=368.36 Aligned_cols=341 Identities=16% Similarity=0.217 Sum_probs=278.7
Q ss_pred cccccccCCchhHHHHHHHHHHHhc--CCCeEEcCCCCC-----CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQA--GVSVIRLAAGEP-----DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAI 141 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~--g~~~i~L~~g~~-----~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~i 141 (429)
.++.....++.+..+.+.+++.... |.++|+|+.|+| ++++|+.+.+++.+....+...|++..|..+||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~i 89 (418)
T 3rq1_A 10 KHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAA 89 (418)
T ss_dssp TTTTTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHH
T ss_pred hhcCCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHH
Confidence 5555666677777887777777665 668999999987 777788888887765433446899989999999999
Q ss_pred HHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHH
Q 014172 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 221 (429)
Q Consensus 142 a~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l 221 (429)
++++...++.. .+++|++|+|+++++..++++++++||+|++++|+|.+|...++..|++++.+|+++++ +.+|++.+
T Consensus 90 a~~~~~~~~~~-~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l 167 (418)
T 3rq1_A 90 EKECFGNFRPE-GHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNHEAF 167 (418)
T ss_dssp HHHHHGGGCCS-SEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCHHHH
T ss_pred HHHHhcccCcc-ccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCHHHH
Confidence 99997766532 23499999999999999999999999999999999999999999999999999986544 77999999
Q ss_pred Hhhccc----CCc-EEEEcCC-CCCccCCCCHHHHHHHHHHHH------hCCCeEEEEccCCcccccCCCCCCcccc-CC
Q 014172 222 ESKLTE----KSR-LLILCSP-SNPTGSVYPKNLLDEIARIVA------KHPRLLVLSDEIYEHIIYAPATHTSFAS-LP 288 (429)
Q Consensus 222 ~~~l~~----~~~-~i~l~~p-~NPtG~~~~~~~l~~I~~~a~------~~~~i~vi~Deay~~~~~~~~~~~~~~~-~~ 288 (429)
++++++ +++ ++++++| |||||.+++.+++++|+++|+ +| |++||+||+|.++.+++....++.. ..
T Consensus 168 ~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~ 246 (418)
T 3rq1_A 168 QNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRN-NVIIGIDVAYLDYSGEKDEVRAFFNKFS 246 (418)
T ss_dssp HHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSC-EEEEEEECTTGGGSSCHHHHHGGGGGGT
T ss_pred HHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCC-CeEEEEecccccccCChHHHHHHHHHHH
Confidence 999875 676 7788999 999999999999999999999 89 9999999999998876543333332 33
Q ss_pred CCCCc--eEEEeccChhcccccceeeEEEc---CHHHHHHHHHHhhcc----cCCCchHHHHHHHHHHhcCCC---ChHH
Q 014172 289 GMWER--TLTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNKIQSQF----TSGASSISQKAGVAALGLGYA---GGEV 356 (429)
Q Consensus 289 ~~~~~--~i~~~S~SK~~~~~G~R~G~v~~---~~~~~~~l~~~~~~~----~~~~~~~~q~aa~~~l~~~~~---~~~~ 356 (429)
...++ +++++||||.+|++|+|+||+++ ++++++.+....... ..+++.++|.++..+|++... ..+.
T Consensus 247 ~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 326 (418)
T 3rq1_A 247 HLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAE 326 (418)
T ss_dssp TCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHH
Confidence 33345 58899999999999999999998 899999887764432 245889999999999975210 0123
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++++.++++++++.+.|+++ |+++.+|+++||+|++++ +..++++.| +++||.+
T Consensus 327 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~--------------~~~~~~~~l-~~~gi~v 382 (418)
T 3rq1_A 327 RNCYYQLIRDRADIFKQEAAQV-GLPMLPYRGGFFITIPTD--------------SANAICEEL-KKEHIYV 382 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCSSSEEEEECT--------------THHHHHHHH-HHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCceEEEEcCCC--------------CHHHHHHHH-HhCCEEE
Confidence 4467789999999999999998 899999999999999874 577899876 4569976
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=359.23 Aligned_cols=318 Identities=23% Similarity=0.395 Sum_probs=283.3
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
+.++|+|+.|++++++|+.+.+++.+.+.+....|++ +..++++++++++.+.+|..+++++|++|+|+++++..++.
T Consensus 31 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~ 108 (391)
T 4dq6_A 31 TNDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLIN 108 (391)
T ss_dssp CSCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHH
Confidence 4679999999999999999999999998776667755 67999999999999999987888999999999999999999
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC--CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
+++++||+|+++.|+|.++...++..|++++.+|++ .+++|.+|++++++++++ +++|++++|+||||.+++.++++
T Consensus 109 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~ 187 (391)
T 4dq6_A 109 ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNPVGRVWTKDELK 187 (391)
T ss_dssp HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCCCCcCcCHHHHH
Confidence 999999999999999999999999999999999987 455678999999999988 99999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccChhcccccceeeEEEcCH-HHHHHHHHHhh
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQS 329 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~~~~l~~~~~ 329 (429)
+|+++|++| |+++|+||+|.++.+++....++..+... .++++++.||||.+|++|+|+||+++++ ++++.+.....
T Consensus 188 ~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 266 (391)
T 4dq6_A 188 KLGDICLKH-NVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFT 266 (391)
T ss_dssp HHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHHHH
Confidence 999999999 99999999999999887666666665432 4788999999999999999999999875 88888887754
Q ss_pred cc-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCC
Q 014172 330 QF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 407 (429)
Q Consensus 330 ~~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~ 407 (429)
.+ ..+++.+++.++.+++.. .++++++.+++++++++.+.+.|++ +||+++..+++++++|++++.. +
T Consensus 267 ~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 336 (391)
T 4dq6_A 267 RIDIKRNNCFSLVATEASYNN---GESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSAL-G------ 336 (391)
T ss_dssp HTTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSBSSEEEEECGGG-C------
T ss_pred hhcCCCCCHHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCccEEEEEEhhhc-C------
Confidence 44 346888999999999986 4788999999999999999999998 7899999999999999999742 0
Q ss_pred CCCCChHHHHHHHHHhCCeec
Q 014172 408 GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 408 ~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 337 ---~~~~~~~~~l~~~~gi~v 354 (391)
T 4dq6_A 337 ---LSDEELESILVQKGKVAL 354 (391)
T ss_dssp ---CCHHHHHHHHHHTTCEEC
T ss_pred ---CCHHHHHHHHHHhCCEEe
Confidence 378899999998879976
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=367.58 Aligned_cols=352 Identities=24% Similarity=0.397 Sum_probs=284.6
Q ss_pred ccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC----CCCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP----DFDTPVLIAEAGINAIREG-FTRYTPNAGTLELR 138 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~----~~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr 138 (429)
|++.+|...... ++.++.+...+.... .++++|+|+.|.| ++++|+.+.+++.+.+... ...|++..|..++|
T Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr 81 (416)
T 1bw0_A 4 WDVSMSNHAGLV-FNPIRTVSDNAKPSP-SPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAR 81 (416)
T ss_dssp CCCCCCHHHHTC-CCHHHHHHHTCCCCC-SCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHH
T ss_pred cccCchhhhhcc-ccHHHHHHHHHHHhh-cCCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHH
Confidence 777766644443 344444443332221 2256899999997 5677899999999988764 46798878999999
Q ss_pred HHHHHHHHh------hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC
Q 014172 139 SAICHKLKE------ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212 (429)
Q Consensus 139 ~~ia~~l~~------~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 212 (429)
+++++++.+ .+|.++++++|++|+|+++++..++++++++||+|+++.|+|+++...++..|++++.+++++++
T Consensus 82 ~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 161 (416)
T 1bw0_A 82 EAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPEN 161 (416)
T ss_dssp HHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGG
T ss_pred HHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCccc
Confidence 999999983 25666788999999999999999999999999999999999999999999999999999987655
Q ss_pred CCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC----CCCccccCC
Q 014172 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA----THTSFASLP 288 (429)
Q Consensus 213 ~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~----~~~~~~~~~ 288 (429)
++.+|++.|+++++++++++++++|+||||.+++.+++++|+++|++| |++||+||+|.++.|++. ...++..+.
T Consensus 162 ~~~~d~~~l~~~l~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 240 (416)
T 1bw0_A 162 DWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFE 240 (416)
T ss_dssp TTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred CCCCCHHHHHHHhccCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHc-CCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence 678999999999988899999999999999999999999999999999 999999999999888765 344555554
Q ss_pred CCCCceEEEeccChhcccccceeeEEEcCHH--HHHHHH----HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACN----KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~--~~~~l~----~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
. .+++++++||||.|+++|+|+||++++++ +++.+. ... ....+++.+.|.++.++|+.. ..+++++.++
T Consensus 241 ~-~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~ 316 (416)
T 1bw0_A 241 T-TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVG-MLVCGPCTVVQAALGEALLNT--PQEHLDQIVA 316 (416)
T ss_dssp C-SCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHH-HHHTCSCHHHHHHHHHHHHSS--CHHHHHHHHH
T ss_pred C-CCcEEEEecchhhCCCCCceEEEEEeeCchhhHHHHHHHHHHHh-ccccCCCcHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 3 45789999999999999999999998663 444333 221 124568899999999999842 2678899999
Q ss_pred HHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++++++++.+.|++++|+++..|++++|+|++++... +....+..+++++|++++||.+
T Consensus 317 ~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~gi~v 376 (416)
T 1bw0_A 317 KIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK------YRDIKTDVEFFEKLLEEENVQV 376 (416)
T ss_dssp HHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG------BSSCCSHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHhCCCCcccCCCeeEEEEEeCCHHH------cCCCCCHHHHHHHHHHHCCEEE
Confidence 99999999999999988999888889999999886310 0001267889999987679976
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-45 Score=373.66 Aligned_cols=359 Identities=20% Similarity=0.292 Sum_probs=284.4
Q ss_pred CcccccccCCchhHHHHHHHHHHHhc-----CC----CeEEcCCCCCC---CC--------------------------C
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQA-----GV----SVIRLAAGEPD---FD--------------------------T 109 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~-----g~----~~i~L~~g~~~---~~--------------------------~ 109 (429)
+++++.++.......+..+++++++. |. ++|++++|+|. .. .
T Consensus 28 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~~~~~~~~ 107 (500)
T 3tcm_A 28 LNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLF 107 (500)
T ss_dssp SCHHHHHCCCGGGSHHHHHHHHHHHHHHHSTTSSSSSSCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGCTTHHHHS
T ss_pred hCHHHHhhhhHhcCHHHHHHHHHHHHHhhCCCCCCHHHhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccCCCCcccC
Confidence 44444444433333555666665555 54 67888888761 11 3
Q ss_pred hHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-CCCCEEEE
Q 014172 110 PVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPGDEVII 184 (429)
Q Consensus 110 p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-~~gd~Vlv 184 (429)
|..+++++.+.+.. ....|++..|..++|+++++++.+.+|.++++++|++|+|+++++..++.+++ ++||+|++
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv 187 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILV 187 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEE
Confidence 45566666777655 35689999999999999999999999988899999999999999999999998 89999999
Q ss_pred cCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCCCHHHHHHHHHHHH
Q 014172 185 PAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVYPKNLLDEIARIVA 258 (429)
Q Consensus 185 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~ 258 (429)
+.|+|+.|...++..|++++.++++.+++|.+|++.|++++++ ++++|++++||||||.+++.+++++|+++|+
T Consensus 188 ~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~ 267 (500)
T 3tcm_A 188 PIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCK 267 (500)
T ss_dssp EESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999999999999998877889999999999976 7899999999999999999999999999999
Q ss_pred hCCCeEEEEccCCcccccCCC-CCCcccc----CC--CCCCceEEEeccChhc-ccccceeeEEEc---CHHHHHHHHHH
Q 014172 259 KHPRLLVLSDEIYEHIIYAPA-THTSFAS----LP--GMWERTLTVNGFSKAF-AMTGWRLGYIAG---PKHFVAACNKI 327 (429)
Q Consensus 259 ~~~~i~vi~Deay~~~~~~~~-~~~~~~~----~~--~~~~~~i~~~S~SK~~-~~~G~R~G~v~~---~~~~~~~l~~~ 327 (429)
+| +++||+||+|..+.|++. ...++.. +. ....++++++||||.| |++|+|+||+++ ++++++.+.+.
T Consensus 268 ~~-~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~ 346 (500)
T 3tcm_A 268 NE-GLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKI 346 (500)
T ss_dssp HH-TCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHH
T ss_pred Hc-CCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHH
Confidence 99 999999999999999653 4445432 21 1234689999999999 899999999998 89999998877
Q ss_pred hhcccCCCchHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc
Q 014172 328 QSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY 400 (429)
Q Consensus 328 ~~~~~~~~~~~~q~aa~~~l~~~~~-------~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~ 400 (429)
.. ...+++.++|.++..++..... ..++++.+++.++++++++.+.|++++|+++.+|+++||+|+++.-..
T Consensus 347 ~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~g~~~~~~~~~lp~ 425 (500)
T 3tcm_A 347 AS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNEAEGAMYVFPQICLPQ 425 (500)
T ss_dssp HH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCCCBTTEECCEECCCH
T ss_pred Hh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEecCCeEEEEeeeecCch
Confidence 64 5667899999999998874210 124567788899999999999999999999999999999997653110
Q ss_pred CC-cccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 GS-EAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~-~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.. ......+..+...++.++++++||++
T Consensus 426 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v 454 (500)
T 3tcm_A 426 KAIEAAKAANKAPDAFYALRLLESTGIVV 454 (500)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHCEEC
T ss_pred hhHHHHHhcCCCcHHHHHHHHHHHCCEEE
Confidence 00 00000001134556778888889986
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-45 Score=365.16 Aligned_cols=338 Identities=24% Similarity=0.399 Sum_probs=285.0
Q ss_pred ccCcccccccCC-chhHHHHHHHHHHH--hcCCCeEEcCCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCCCCHHH
Q 014172 66 VSLSPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTLEL 137 (429)
Q Consensus 66 ~~~s~~~~~~~~-~~~~~~~~~~~~~~--~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~~l 137 (429)
+.++++++.+++ +.+..+.++..... ..++++|+|+.|++++++|+.+.+++.+++. .+...|++..|..+|
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l 103 (432)
T 3ei9_A 24 VSRNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPL 103 (432)
T ss_dssp CCCCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHH
T ss_pred cccChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHH
Confidence 457788888887 46666655544332 2456899999999999999999999999887 345689888899999
Q ss_pred HHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCC------------EEEE
Q 014172 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADA------------TPVI 205 (429)
Q Consensus 138 r~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~ 205 (429)
++++++++.+ ++.+++++|++|+|+++++.. +..++++||.|++++|+|.++...++..|. +++.
T Consensus 104 ~~~ia~~~~~--~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 180 (432)
T 3ei9_A 104 RAAIAKTFYG--GLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEY 180 (432)
T ss_dssp HHHHHHHHHT--TTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEE
T ss_pred HHHHHHHHHc--cCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEE
Confidence 9999999974 555778999999999999996 578889999999999999999999998884 6788
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++++.++++..|++. .+++++|++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++. ..++.
T Consensus 181 ~~~~~~~~~~~~l~~-----~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~-~~~li~Dea~~~~~~~~~-~~~~~ 253 (432)
T 3ei9_A 181 MRCTPENGFFPDLST-----VGRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKN-GSIIVYDSAYAMYMSDDN-PRSIF 253 (432)
T ss_dssp EECCGGGTTSCCGGG-----CCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSC-CSSGG
T ss_pred eccCcccCCcCChhh-----CCCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHc-CcEEEEccchHhhccCCC-CCChh
Confidence 888766666666543 35789999999999999999999999999999999 999999999999888754 34555
Q ss_pred cCCCCCCceEEEeccChhcccccceeeEEEcCHHH--------HHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF--------VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~--------~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~ 357 (429)
.+....+++++++||||.||++|+|+||+++++++ ++.+.+.......+++.++|.++.+++... ..+++
T Consensus 254 ~~~~~~~~~i~~~S~SK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~ 331 (432)
T 3ei9_A 254 EIPGAEEVAMETASFSNYAGFTGVRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPE--GLEAM 331 (432)
T ss_dssp GSTTGGGTEEEEEESHHHHCTTTTCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHH--HHHHH
T ss_pred hcCCCCCeEEEEecchhccCCcccceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcc--cHHHH
Confidence 66555688999999999999999999999999887 777777766666678999999999888631 24678
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++++.++++++++.+.|+++ |+++..+.+++|+|++++.. ++.+++.+|++++||.+
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ll~~~gv~v 389 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL-GYDVYGGKNAPYVWVHFPNQ------------SSWDVFAEILEKTHVVT 389 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCEEECSSSSEEEEECTTS------------CHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CceecCCCcceEEEEECCCC------------CHHHHHHHHHHHCCEEE
Confidence 999999999999999999998 89888888899999999842 68899999999889986
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-45 Score=361.14 Aligned_cols=318 Identities=22% Similarity=0.337 Sum_probs=278.7
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
+++|+|+.|++++++|+.+.+++.+.+......|++. ..++|+++++++.+.+|+++++++|++|+|+++++.+++++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~ 108 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVRE 108 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHH
Confidence 3799999999998889999999999987666778653 89999999999998889777889999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
++++||+|+++.|+|.++...++..|++++.+|++++ ++|.+|++.|+++++ +++++|++++||||||.+++.+++++
T Consensus 109 l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 109 FTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp HCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred hcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 9999999999999999999999999999999998633 346789999999997 68999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 330 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~ 330 (429)
|+++|++| |+++|+||+|.++.+++....++..+... .++++++.||||.+|++|+|+||++++ +++++.+......
T Consensus 189 i~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~ 267 (399)
T 1c7n_A 189 IKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDA 267 (399)
T ss_dssp HHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhh
Confidence 99999999 99999999999998877555566555321 478899999999999999999999997 6799988877666
Q ss_pred ccC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCCC
Q 014172 331 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 331 ~~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
++. +++.++|.++.++|+. ..+++++.++.++++++++.+.|++ +||+++.++++++++|++++.. +
T Consensus 268 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 336 (399)
T 1c7n_A 268 TSGMPFTTLGYKACEICYKE---CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRAL-K------- 336 (399)
T ss_dssp TTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGG-C-------
T ss_pred cccCCCCHHHHHHHHHHHhC---ChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCCceEEEEEEcccC-C-------
Confidence 544 5789999999999986 4678999999999999999999998 8899998999999999999742 0
Q ss_pred CCCChHHHHHHHHHhCCeec
Q 014172 409 KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 337 --~~~~~~~~~l~~~~gi~v 354 (399)
T 1c7n_A 337 --MDHKAMEEFMIHKAQIFF 354 (399)
T ss_dssp --CCHHHHHHHHHHTTCCCC
T ss_pred --CCHHHHHHHHHHhCCEEE
Confidence 267889999987779876
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=365.98 Aligned_cols=338 Identities=16% Similarity=0.139 Sum_probs=269.0
Q ss_pred cccccCCchhHHHHHHHHHHHhcC-CCeEEcCCCCC-CCCCh----HHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 014172 71 RVNAVKPSKTVAITDQATALAQAG-VSVIRLAAGEP-DFDTP----VLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~L~~g~~-~~~~p----~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (429)
.+...++..+..+ ....+..+ +++|+|+.|.+ ++..+ +.+.+++.+.... +..+|.+..|.+++|+++++
T Consensus 6 ~~~~~~~~~i~~~---~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~ 82 (401)
T 7aat_A 6 HVEMGPPDPILGV---TEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAE 82 (401)
T ss_dssp TCCCCCCCHHHHH---HHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHH
T ss_pred cCCCCCCChhHHH---HHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHH
Confidence 3444455544444 44444443 45899999997 65442 4678877776653 56789888999999999999
Q ss_pred HHHhhcCCCCCCCcEEE--ecChHHHHHHHHHHhc---CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 144 KLKEENGLSYTPDQILV--SNGAKQSILQAVLAVC---SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~---~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
++.+.+|..+++++|++ |+|+++++.+++.++. ++||+|++++|+|.+|...++..|++++.+|++.++++.+|+
T Consensus 83 ~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 162 (401)
T 7aat_A 83 LALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF 162 (401)
T ss_dssp HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCH
Confidence 99988887777899977 9999999998877664 899999999999999999999999999999987555688999
Q ss_pred HHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC--CCCccccCCCCCCc
Q 014172 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~--~~~~~~~~~~~~~~ 293 (429)
+.+++.+. ++++++++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++. ...++..+....++
T Consensus 163 ~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T 7aat_A 163 TGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence 97666654 5788999999999999999999999999999999 999999999999888653 12233333234688
Q ss_pred eEEEeccChhcccccceeeEEEc---CHH----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCC---hHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVKA 363 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~---~~~----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~---~~~~~~~~~~ 363 (429)
+++++||||.||++|+|+||+++ +++ ++..+.........+++.+.|.++..++.++... .+++++++++
T Consensus 242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T 7aat_A 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876 555 5566666666677778888888888888652110 3557888999
Q ss_pred HHHHHHHHHHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+++.+.|+++ +++++..|+++||+|++++ .+++.+|++++||.+
T Consensus 322 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~gi~v 373 (401)
T 7aat_A 322 IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----------------PEQVERLTKEFSIYM 373 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCC----------------HHHHHHHHHhCCEec
Confidence 999999999999886 2477778999999998663 355678888889986
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=355.91 Aligned_cols=315 Identities=17% Similarity=0.282 Sum_probs=272.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE-LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~-lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
++|+|+.|++++++|+.+.+++.+.+......|++. ..+ +|+++++++.+.+|+.+++++|++|+|+++++.+++++
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~ 106 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQ 106 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHH
Confidence 589999999998889999999999987656778654 678 99999999998889778889999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC-CCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE-NFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
++++||+|+++.|+|.++...++..|++++.+|++.++ +|.+|++.|++++++ ++++|++++|+||||.+++.+++++
T Consensus 107 l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~ 186 (390)
T 1d2f_A 107 WSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI 186 (390)
T ss_dssp SSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred hcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 99999999999999999999999999999999987543 467899999999986 7899999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhh-c
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS-Q 330 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~-~ 330 (429)
|+++|++| |+++|+||+|.++.+++....++..+.... ..+ +.||||.+|++|+|+||++++ +++++.+..... .
T Consensus 187 l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 263 (390)
T 1d2f_A 187 MADLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVARGD-WAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR 263 (390)
T ss_dssp HHHHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTCCSS-EEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT
T ss_pred HHHHHHHc-CCEEEEEccccccccCCCCCcCHHHcchhh-Hhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhh
Confidence 99999999 999999999999988765555665554322 123 999999999999999999985 788888877665 3
Q ss_pred ccC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCCC
Q 014172 331 FTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 331 ~~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
... +++.+.|.++.++++. .++++++.++.++++++.+.+.|++ +||+++.+|++++++|++++.. +
T Consensus 264 ~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 332 (390)
T 1d2f_A 264 DGLSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-N------- 332 (390)
T ss_dssp SCCCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGG-C-------
T ss_pred cccCCCCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCccEEEEEEcccc-C-------
Confidence 443 6789999999998986 4778999999999999999999998 7899988899999999999742 0
Q ss_pred CCCChHHHHHHHHHhCCeec
Q 014172 409 KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 333 --~~~~~l~~~l~~~~gi~v 350 (390)
T 1d2f_A 333 --IDDNALQKALIEQEKVAI 350 (390)
T ss_dssp --CCHHHHHHHHHHTTCEEC
T ss_pred --CCHHHHHHHHHHHcCEEe
Confidence 267899999987779986
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=354.69 Aligned_cols=327 Identities=29% Similarity=0.509 Sum_probs=277.8
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.++++++.++++.+..+...+.. +++|+|+.|.|++++|+.+.+++.+.+.+ ...|++..|..+||+++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~~ 75 (381)
T 1v2d_A 2 RLHPRTEAAKESIFPRMSGLAQR-----LGAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEFA 75 (381)
T ss_dssp CCCGGGGGC---CHHHHHHHHHH-----HTCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHHT
T ss_pred chhhhhhhcCccHHHHHHHHHhc-----CCeEEecCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCCCHHHHHHHHHhcC
Confidence 46788888888877666555443 34899999999998899999999998865 5679877799999999999963
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC--CCCCCCCCHHHHHhh
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR--ISENFLLDPKVLESK 224 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~e~l~~~ 224 (429)
+++++|++|+|+++++..++.+++++||+|++++|+|.++...++..|++++.++++ ++ ++.+|+++|+++
T Consensus 76 ------~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~~~~d~~~l~~~ 148 (381)
T 1v2d_A 76 ------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPE-GFRLDLSALEKA 148 (381)
T ss_dssp ------SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETT-EEECCHHHHHTT
T ss_pred ------CChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCc-cCCcCHHHHHHh
Confidence 467899999999999999999999999999999999999999999999999999986 32 367899999999
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
+++++++|++++|+||||.+++.+++++|+++|++| |+++|+||+|.++.+ +....++..+ ..++++++.||||.+
T Consensus 149 l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~-g~~~~~~~~~--~~~~~~~~~s~sK~~ 224 (381)
T 1v2d_A 149 LTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYY-GERPRRLREF--APERTFTVGSAGKRL 224 (381)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBS-SSCCCCHHHH--CTTTEEEEEEHHHHT
T ss_pred cCcCCEEEEECCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEEcCcccccc-CCCCCCHHHh--cCCCEEEEeechhhc
Confidence 988899999999999999999999999999999999 999999999999887 4444455544 357899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
|++|+|+||+++++++++.+.........+++.+.|.++.++|+... .+++++++++.++++++++.+.|++. |+++.
T Consensus 225 ~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 302 (381)
T 1v2d_A 225 EATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGYRRRRDLLAGGLRAM-GLRVY 302 (381)
T ss_dssp TCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred CCcccceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHHHHHHHHHHHC-CCEec
Confidence 99999999999999999988877665666788999999999988511 04678899999999999999999986 89998
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|++++|+|++++.. + +.++++++||.+
T Consensus 303 ~~~~~~~~~~~~~~~------------~----~~~~l~~~gi~v 330 (381)
T 1v2d_A 303 VPEGTYFLMAELPGW------------D----AFRLVEEARVAL 330 (381)
T ss_dssp CCSBSSEEEEECTTC------------C----HHHHHHHTCEEC
T ss_pred CCCcceEEEEecChH------------h----HHHHHHhCCEEE
Confidence 899999999998741 2 555666779876
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=366.40 Aligned_cols=341 Identities=21% Similarity=0.316 Sum_probs=289.8
Q ss_pred ccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHHHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELR 138 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr 138 (429)
++..+++++..++++.+..+...+ .++++|+|+.|.|+.. +++.+.+++.+.+... ...|++..|..++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr 91 (425)
T 1vp4_A 17 LEGKISKIGQNMKSSIIREILKFA-----ADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLK 91 (425)
T ss_dssp HHHHCCHHHHTCCCCCHHHHTTTT-----TSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHH
T ss_pred hHhhhhhhhhcCCCcHHHHHHHhc-----cCCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHH
Confidence 344578888888887665554322 2457999999987654 5788999999888653 36898888999999
Q ss_pred HHHHHHHHhhcCCC-CCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCC
Q 014172 139 SAICHKLKEENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217 (429)
Q Consensus 139 ~~ia~~l~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 217 (429)
+++++++.+.+|.+ +++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+|++++ .+|
T Consensus 92 ~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---~~d 168 (425)
T 1vp4_A 92 QQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD---GMD 168 (425)
T ss_dssp HHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT---EEC
T ss_pred HHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCCC---CCC
Confidence 99999998877876 77899999999999999999999999999999999999999999999999999998643 289
Q ss_pred HHHHHhhccc--------CCcEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 218 PKVLESKLTE--------KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 218 ~e~l~~~l~~--------~~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
++.|++++++ ++++|+ +++|+||||.+++.+++++|+++|++| |+++|+||+|.++.|++....++..+.
T Consensus 169 ~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~ 247 (425)
T 1vp4_A 169 LNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVDPIFKIG 247 (425)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCCCCCHHHHH
T ss_pred HHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEECCCccccCCCCCCcCHHHhC
Confidence 9999998875 788884 799999999999999999999999999 999999999999988765555555553
Q ss_pred CCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r 368 (429)
. .++++++.||||.++ +|+|+||+++++++++.+.......+.+++.++|.++.++|+... .++++++.++.+++++
T Consensus 248 ~-~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~ 324 (425)
T 1vp4_A 248 G-PERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYD-LLEQLKPTIELYRRKR 324 (425)
T ss_dssp C-TTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC-HHHHTHHHHHHHHHHH
T ss_pred C-CCCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 2 478999999999999 999999999999999999887766667789999999999998732 1577889999999999
Q ss_pred HHHHHHhcc-CC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 369 DFLVKSFGE-LE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 369 ~~l~~~L~~-l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.+.|++ ++ |+++..|.+|+|+|++++.. .+..+++++|+++ ||.+
T Consensus 325 ~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~-----------~~~~~l~~~l~~~-gi~v 376 (425)
T 1vp4_A 325 TVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG-----------FDTWEMFEYAKRK-KVFY 376 (425)
T ss_dssp HHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTT-----------CCTTTTHHHHHHH-TEEC
T ss_pred HHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCC-----------CCHHHHHHHHHHC-CCEE
Confidence 999999987 45 68888889999999999742 2567899999988 9876
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=359.06 Aligned_cols=319 Identities=24% Similarity=0.360 Sum_probs=285.8
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
|+++|+|+.|++++++|+.+.+++.+.+.+....|++. ..++++++++++.+.+|+++++++|++|+|+++++..+++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~ 137 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQ 137 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHH
Confidence 67899999999999999999999999988766778654 4899999999999999988889999999999999999999
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC-CCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR-ISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
+++++||+|+++.|+|.++...++..|.+++.+|++ .+++|.+|++.|+++++ +++++|++++|+||||.+++.++++
T Consensus 138 ~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~ 217 (421)
T 3l8a_A 138 AFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLI 217 (421)
T ss_dssp HHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHH
T ss_pred HhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHH
Confidence 999999999999999999999999999999999987 45567789999999998 7899999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC-CCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhh
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQS 329 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~ 329 (429)
+|.++|++| |+++|+||+|.++.+++....++..+.. ..++++++.|+||.+|++|+|+||++++ +++++.+.....
T Consensus 218 ~l~~l~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~~~~ 296 (421)
T 3l8a_A 218 KIAELCKKH-GVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQL 296 (421)
T ss_dssp HHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCHHHHHHHHHHHH
Confidence 999999999 9999999999999998876777777653 2588899999999999999999999998 899998887653
Q ss_pred c-ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCC
Q 014172 330 Q-FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG 408 (429)
Q Consensus 330 ~-~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~ 408 (429)
. ...+++.+++.++.++++. .++|++++++.++++++++.+.|+++|++++.+++++|++|++++.. +
T Consensus 297 ~~~~~~~n~~~~~a~~aal~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~~~~~~~~~v~~~~~-~------- 365 (421)
T 3l8a_A 297 ANNQHEVPTVGMIATQAAFQY---GKPWLEELKTVIEGNIKLVIKELEAKTKIKVMEPEGTYLVWLDFSAY-A------- 365 (421)
T ss_dssp HTTCSCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEECCSBSSEEEEECGGG-T-------
T ss_pred hcccCCCCHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeCCCeeEEEEEecccc-C-------
Confidence 3 3447899999999999986 57889999999999999999999988899999999999999999752 1
Q ss_pred CCCChHHHHHHHHHhCCeec
Q 014172 409 KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 409 ~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 366 --~~~~~l~~~l~~~~gi~v 383 (421)
T 3l8a_A 366 --IAQPQLSEKLQNEAKVVL 383 (421)
T ss_dssp --CCTTHHHHHHHHTTCEEC
T ss_pred --CCHHHHHHHHHHhCCEEE
Confidence 257799999998889986
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=356.70 Aligned_cols=335 Identities=25% Similarity=0.399 Sum_probs=272.7
Q ss_pred cCcccccccCC-chhHHHHHHHHHHH--hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHc-----CCCCCCCCCCCHHHH
Q 014172 67 SLSPRVNAVKP-SKTVAITDQATALA--QAGVSVIRLAAGEPDFDTPVLIAEAGINAIRE-----GFTRYTPNAGTLELR 138 (429)
Q Consensus 67 ~~s~~~~~~~~-~~~~~~~~~~~~~~--~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-----~~~~Y~~~~G~~~lr 138 (429)
++++++.++.+ +.+..+.++..... ..++++|+|+.|++++++|+.+.+++.+.+.. ....|++..|..+||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr 81 (400)
T 3asa_A 2 KRNPHFVSLTKNYLFADLQKRVAQFRLENPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALR 81 (400)
T ss_dssp CCCHHHHTCCCCCHHHHHHHHHHHHHHHCTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHH
T ss_pred ccchhhhccCCcccHHHHHHHHHHhhhhcCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHH
Confidence 45788888876 44566666555543 24678999999999988899999999988754 246798888999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCE-EEEecCCCCCCCCCC
Q 014172 139 SAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFLLD 217 (429)
Q Consensus 139 ~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d 217 (429)
+++++++. +|. +++++|++|+|+++++..++ .++++||+|++++|+|.++...++..|++ ++.+|+++++++..|
T Consensus 82 ~~la~~l~--~g~-~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 157 (400)
T 3asa_A 82 QKLSEDFY--RGF-VDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE 157 (400)
T ss_dssp HHHHHTTS--TTS-SCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC
T ss_pred HHHHHHHH--cCC-CCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccC
Confidence 99999964 454 57889999999999999865 45689999999999999999999999999 999998765555555
Q ss_pred HHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEE
Q 014172 218 PKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTV 297 (429)
Q Consensus 218 ~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~ 297 (429)
++. . +++++|++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++....++..++...++++++
T Consensus 158 l~~---~--~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 231 (400)
T 3asa_A 158 FPE---D--THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEH-EILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEI 231 (400)
T ss_dssp CCT---T--CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEE
T ss_pred hhh---c--cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEE
Confidence 432 1 5789999999999999999999999999999999 999999999999887664444555554334688999
Q ss_pred eccChhcccccceeeEEEcCHHH-------HHHHHHHhhcc-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHF-------VAACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRD 369 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~-------~~~l~~~~~~~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~ 369 (429)
+||||.+|++|+|+||+++++++ ++.+....... ..+++.++|.++.++|+.. +++++++.++++++
T Consensus 232 ~s~sK~~g~~GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~ 306 (400)
T 3asa_A 232 NSFSKPLGFAGIRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL-----PQLEAIHYYRENSD 306 (400)
T ss_dssp EECCGGGTTTTCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT-----TTCHHHHHHHHHHH
T ss_pred ecchhhcCCcchheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH-----HHHHHHHHHHHHHH
Confidence 99999999999999999999888 66664332222 2358999999999999862 56788899999999
Q ss_pred HHHHHhccCCCceeecCCceEEEEEe-cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 370 FLVKSFGELEGVKMSEPQGAFYLFID-FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 370 ~l~~~L~~l~g~~~~~p~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+.|+++ |+++..|.+++|+|++ ++.. .++.+++++|++++||.+
T Consensus 307 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~gv~v 354 (400)
T 3asa_A 307 LLRKALLAT-GFEVFGGEHAPYLWVKPTQAN-----------ISDRDLFDFFLREYHIAI 354 (400)
T ss_dssp HHHHHHHHT-TCEEEECSSSSEEEEECCCTT-----------CCTTTHHHHHHHHHSEEC
T ss_pred HHHHHHHHC-CCeeeCCCCceEEEEeccCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 999999988 8998888889999999 7642 245689999988879876
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=367.64 Aligned_cols=346 Identities=13% Similarity=0.102 Sum_probs=263.8
Q ss_pred ccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia 142 (429)
++-++++++..++++.+..+.+.++. ...+++|+|+.|+| +++.|+.+.+++.++.......|++..|..+||++++
T Consensus 12 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia 89 (409)
T 4eu1_A 12 LEAQTQGPGSMGKPDPILGLGQDFRM--DPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQ 89 (409)
T ss_dssp ---------------CHHHHHHHHHH--CCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHH
T ss_pred hhhhHhhcCCCCCCChHHHHHHHHhh--CCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHH
Confidence 45567889999999876666555443 23457999999997 8887777888877764445678999999999999999
Q ss_pred HHHHhhcCCCCCCCcE--EEecChHHHHHHH---HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCC
Q 014172 143 HKLKEENGLSYTPDQI--LVSNGAKQSILQA---VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLD 217 (429)
Q Consensus 143 ~~l~~~~g~~~~~~~i--~~t~G~~~al~~~---l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 217 (429)
+++....+.++++++| ..|.|+++++..+ +++++++||+|++++|+|.+|...++..|++++.+++..++++.+|
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 169 (409)
T 4eu1_A 90 KLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLN 169 (409)
T ss_dssp HHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEEC
T ss_pred HHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCc
Confidence 9984322211236788 4599999998865 4456789999999999999999999999999999998656678899
Q ss_pred HHHHHhhcc--c-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC--CCCccccCCCCCC
Q 014172 218 PKVLESKLT--E-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA--THTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~--~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~--~~~~~~~~~~~~~ 292 (429)
++++++.++ + +++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++. ...++..+....+
T Consensus 170 ~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~ 248 (409)
T 4eu1_A 170 LAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRR-NHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVP 248 (409)
T ss_dssp HHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhC-CcEEEEeccccccccCCcccchHHHHHHHhhCC
Confidence 999999986 2 455666799999999999999999999999999 999999999999988752 1233333333457
Q ss_pred ceEEEeccChhcccccceeeEE---EcCHH----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCC---hHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYI---AGPKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEVVSKMVK 362 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v---~~~~~----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~---~~~~~~~~~ 362 (429)
++++++||||.||++|+|+||+ +.+++ +++.+.........+++.++|.++..+|+.+... .++++++++
T Consensus 249 ~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 328 (409)
T 4eu1_A 249 NLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSS 328 (409)
T ss_dssp CCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999996 56677 6666666666667778899999999999852100 234778899
Q ss_pred HHHHHHHHHHHHhccCCC----ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 363 AFRERRDFLVKSFGELEG----VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g----~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+++++++++.+.|+++ | +++..|+++||+|++++ .+++.+|++++||.+.
T Consensus 329 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ll~~~gv~v~ 382 (409)
T 4eu1_A 329 RIAEVRKRLVSELKAC-GSVHDWSHIERQVGMMAYTGLT----------------REQVELLRSEYHIYMT 382 (409)
T ss_dssp HHHHHHHHHHHHHHHT-TCCSCCHHHHHSCSSEEECCCC----------------HHHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHhc-CCCCCcceecCCceEEEEeCCC----------------HHHHHHHHHcCCEEEc
Confidence 9999999999999987 4 77788999999996553 3668889988899863
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=364.85 Aligned_cols=314 Identities=17% Similarity=0.246 Sum_probs=271.6
Q ss_pred CCeEEcCCCCC-CCCChHHH--HHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCc---EEEecChHHH
Q 014172 95 VSVIRLAAGEP-DFDTPVLI--AEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ---ILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~-~~~~p~~v--~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~---i~~t~G~~~a 167 (429)
+++|+|+.|+| +++.|+.+ .+++.+.+.. ...+|++..|..+||+++++++.+.+ +.+++++ |++|+|++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~~t~g~~~a 125 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPIVTNALTHG 125 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCEEESHHHHH
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEEEcCCchHH
Confidence 56899999999 88877766 7776665543 45789888899999999999998764 5677888 9999999999
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGS 243 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~ 243 (429)
+..++++++++||+|++++|+|.++...++. .|++++.++++.++ +.+|++++++++++ +++++++++||||||.
T Consensus 126 l~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~ 204 (430)
T 2x5f_A 126 LSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIMILNYPNNPTGY 204 (430)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCC
T ss_pred HHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCC
Confidence 9999999999999999999999999999999 99999999987544 67999999999976 7899999999999999
Q ss_pred CCCHHHHHHHHHHHHh-----CCCeEEEEccCCcccccCCCCCCccc-cCCCCCCc---eEEEeccChhcccccceeeEE
Q 014172 244 VYPKNLLDEIARIVAK-----HPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWER---TLTVNGFSKAFAMTGWRLGYI 314 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~-----~~~i~vi~Deay~~~~~~~~~~~~~~-~~~~~~~~---~i~~~S~SK~~~~~G~R~G~v 314 (429)
+++.+++++|+++|++ | |++||+||+|.++.+++....++. .+....++ +++++||||.+|++|+|+||+
T Consensus 205 ~~~~~~l~~i~~~~~~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~ 283 (430)
T 2x5f_A 205 TPTHKEVTTIVEAIKALANKGT-KVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFM 283 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTC-EEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEE
T ss_pred cCCHHHHHHHHHHHHhhhhccC-CEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEE
Confidence 9999999999999999 9 999999999999988765444554 44433567 899999999999999999999
Q ss_pred Ec---CHHHHHHHHHHhhc----ccCCCchHHHHHHHHHHh-cCCCChHHHHH---HHHHHHHHHHHHHHHhc----cCC
Q 014172 315 AG---PKHFVAACNKIQSQ----FTSGASSISQKAGVAALG-LGYAGGEVVSK---MVKAFRERRDFLVKSFG----ELE 379 (429)
Q Consensus 315 ~~---~~~~~~~l~~~~~~----~~~~~~~~~q~aa~~~l~-~~~~~~~~~~~---~~~~~~~~r~~l~~~L~----~l~ 379 (429)
++ ++++++.+...... .+.+++.+.|.++.++|+ . .++.++ +++.++++++.+.+.|+ ++
T Consensus 284 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~- 358 (430)
T 2x5f_A 284 TFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNN----KQFDKEIEQNIQTLKERYEVTKEVVYADQYHS- 358 (430)
T ss_dssp EEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-
T ss_pred EEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-
Confidence 99 99999998876654 566789999999999998 6 244444 89999999999999998 55
Q ss_pred CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++.+|++|+|+|+++++ .+..+++++|++++||.+
T Consensus 359 g~~~~~~~~g~~~~~~~~~------------~~~~~~~~~l~~~~gi~v 395 (430)
T 2x5f_A 359 HWQAYDFNSGYFMAIKVHD------------VDPEALRKHLIDKYSIGV 395 (430)
T ss_dssp TEEECCCCBSSEEEEEESS------------SCHHHHHHHHHHHHCEEC
T ss_pred CceeeCCCceEEEEeCCCC------------CCHHHHHHHHHHhCCEEE
Confidence 7888889999999999973 268899999998569976
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=357.89 Aligned_cols=341 Identities=18% Similarity=0.155 Sum_probs=273.5
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCC---CCCCCCh--HHHHHHHHH-HHHc-CCCCCCCCCCCHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTP--VLIAEAGIN-AIRE-GFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g---~~~~~~p--~~v~~a~~~-~~~~-~~~~Y~~~~G~~~lr~~ia 142 (429)
.++...+++.+..+...+.. ...+++|+|+.| +++..+| +.+.+++.+ ++.. ....|++..|..++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 80 (397)
T 3fsl_A 3 QKVDAYAGDPILTLMERFKE--DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp TTCCCCCCCHHHHHHHHHHT--CCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHH
T ss_pred ccCCCCCCCchhhHHHHHhc--CCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHH
Confidence 34566677766666554443 233569999999 5665554 899999999 8865 4568988899999999999
Q ss_pred HHHHhhcCCCCCCC--cEEEecChHHHHHHHH--HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 143 HKLKEENGLSYTPD--QILVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 143 ~~l~~~~g~~~~~~--~i~~t~G~~~al~~~l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
+++...++..++++ +|++|+|+++++..++ ..++++||+|+++.|+|.+|...++..|++++.+++..++++.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 160 (397)
T 3fsl_A 81 PLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRF 160 (397)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECH
T ss_pred HHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcH
Confidence 99976655444678 8999999999999984 4567999999999999999999999999999999985556788999
Q ss_pred HHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC-CCCCccccCCCCCCce
Q 014172 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERT 294 (429)
Q Consensus 219 e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~-~~~~~~~~~~~~~~~~ 294 (429)
+.+++.++ ++++++++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++ ....++..+....+++
T Consensus 161 ~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T 3fsl_A 161 NDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPA 239 (397)
T ss_dssp HHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCE
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhC-CEEEEEecCchhhccCcccccHHHHHHHhcCCCE
Confidence 99999997 5778888999999999999999999999999999 99999999999998864 2334444444446899
Q ss_pred EEEeccChhcccccceeeEEEc---CHHHHHHHHH----HhhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHHH
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAG---PKHFVAACNK----IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAF 364 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~---~~~~~~~l~~----~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~~ 364 (429)
++++||||.+|++|+|+||+++ ++++++.+.. .......+++.++|.++..++..+.. ..++++++++++
T Consensus 240 i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 319 (397)
T 3fsl_A 240 LVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRI 319 (397)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999974 4565554432 22334556788999998888875210 046688899999
Q ss_pred HHHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 365 RERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+++++++.+.|++++ |+++..|++++|+|++++ . +.+.++++++||.+.
T Consensus 320 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~l~~~gi~v~ 371 (397)
T 3fsl_A 320 LAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLS---------------A-AQVDRLREEFGVYLI 371 (397)
T ss_dssp HHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCC---------------H-HHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCC---------------H-HHHHHHHHhCCEEEC
Confidence 999999999999874 788888999999998764 2 345666777799863
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=346.75 Aligned_cols=327 Identities=22% Similarity=0.303 Sum_probs=273.4
Q ss_pred cCcccccccCCchhHH-HHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVA-ITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~-~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l 145 (429)
++++.++.+.++.... .....+. ...+++|+|+.|++++++|+.+.+++.+.+.. ...|++..+ .++|+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y~~~~~-~~lr~~la~~~ 78 (365)
T 3get_A 3 KFNEFLNNLSNYEPGKDIEVIAKE--YGVKEVIKLASNENPFGTPPKAIECLRQNANK-AHLYPDDSM-IELKSTLAQKY 78 (365)
T ss_dssp CCCGGGGGSCCCCCCCCHHHHHHH--TTCSCCEECSSCCCTTCSCHHHHHHHHHHGGG-TTSCCCTTC-HHHHHHHHHHH
T ss_pred CcchhHhhcCCCCCCCCHHHHHHh--cCCCceEEecCCCCCCCCCHHHHHHHHHHHHh-hccCCCCCh-HHHHHHHHHHh
Confidence 4456666666554322 2222222 22367999999999999999999999998763 567866655 89999999997
Q ss_pred HhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 146 ~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
. +++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.+++ .++++ +|++++++++
T Consensus 79 ~------~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l 150 (365)
T 3get_A 79 K------VQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETH 150 (365)
T ss_dssp T------CCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHT
T ss_pred C------CCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHh
Confidence 3 56789999999999999999999999999999999999999999999999999998 34567 9999999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCccccc--CCCCCCccccCCCCCCceEEEeccChh
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
++++++|++++||||||.+++.+++++|+++| ++ |+++|+||+|.++.| .+....+........+++++++||||.
T Consensus 151 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 228 (365)
T 3get_A 151 KDEIKLIFLCLPNNPLGECLDASEATEFIKGV-NE-DCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKL 228 (365)
T ss_dssp TTTEEEEEEESSCTTTCCCCCHHHHHHHHHTS-CT-TSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSST
T ss_pred CCCCCEEEEcCCCCCCCCCcCHHHHHHHHHhC-CC-CcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchH
Confidence 99999999999999999999999999999988 68 999999999999886 443333443332335789999999999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+|++|+|+||+++++++++.+......+ +++.+.|.++.++|+. .+++++.+++++++++.+.+.|+++ |+++
T Consensus 229 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~ 301 (365)
T 3get_A 229 YGLGGLRIGYGIANANIISAFYKLRAPF--NVSNLALKAAVAAMDD----DEFTEKTLENNFSQMELYKEFAKKH-NIKI 301 (365)
T ss_dssp TSCTTTCCEEEEECHHHHHHHHHHSCTT--CSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hcCcchheEEEEcCHHHHHHHHHhcCCC--CcCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEE
Confidence 9999999999999999999998876553 5899999999999985 6889999999999999999999998 8988
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.++ |+|++++.. +..+++++|.++ ||.+
T Consensus 302 ~~~~~~-~~~~~~~~~------------~~~~~~~~l~~~-gi~v 332 (365)
T 3get_A 302 IDSYTN-FITYFFDEK------------NSTDLSEKLLKK-GIII 332 (365)
T ss_dssp CCCSSS-EEEEECSSS------------CHHHHHHHHHTT-TEEC
T ss_pred CCCCCe-EEEEECCCC------------CHHHHHHHHHHC-CEEE
Confidence 766665 589999752 678999998876 9976
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-44 Score=355.55 Aligned_cols=343 Identities=15% Similarity=0.125 Sum_probs=277.8
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC-C----CCChHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-D----FDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSA 140 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~-~----~~~p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ 140 (429)
+++++..++++.+..+...+++. .++++|+|+.|.+ + ..+++.+.+++.+.+.+ ...+|++..|..+||++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 82 (412)
T 1ajs_A 5 VFAEVPQAQPVLVFKLIADFRED--PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTC 82 (412)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHTC--CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred hhhhCcccCCchHHHHHHHHhhc--CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHH
Confidence 56678888899888877766542 4678999999985 3 23468899999888732 35679889999999999
Q ss_pred HHHHHHhhcCCCCCCCcEEE--ecChHHHHHHHHH--HhcCCC-----CEEEEcCCCCCChHHHHHHcCCE-EEEecCCC
Q 014172 141 ICHKLKEENGLSYTPDQILV--SNGAKQSILQAVL--AVCSPG-----DEVIIPAPFWVSYPEMARIADAT-PVILPTRI 210 (429)
Q Consensus 141 ia~~l~~~~g~~~~~~~i~~--t~G~~~al~~~l~--~l~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~ 210 (429)
+++++...+|..+++++|++ |+|+++++.++++ .++++| |+|+++.|+|.+|...++..|++ ++.+++.+
T Consensus 83 la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~ 162 (412)
T 1ajs_A 83 ASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWD 162 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEE
T ss_pred HHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeeec
Confidence 99999766665557889999 9999999999854 456899 99999999999999999999999 99999865
Q ss_pred CCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC--CCCCccc
Q 014172 211 SENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFA 285 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~--~~~~~~~ 285 (429)
++++.+|++.+++.+++ +++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.+++ ....++.
T Consensus 163 ~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~ 241 (412)
T 1ajs_A 163 TEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred CCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEcccccccCCcccccchHHH
Confidence 56678999999998864 677888999999999999999999999999999 99999999999988764 1233444
Q ss_pred cCCCCCCceEEEeccChhcccccceeeEEEc---CHH----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCC---ChH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGE 355 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~---~~~----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~ 355 (429)
.+....++++++.||||.+|++|+|+||+++ +++ +++.+.........+++.++|.++.++|+.... ..+
T Consensus 242 ~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1ajs_A 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHH
Confidence 3433357899999999999988999999999 887 444454434444455789999999999986100 024
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 356 VVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 356 ~~~~~~~~~~~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
++++++++++++++++.+.|+++. ++++..|++++|+|++++ .+++.++++++||.+.
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gv~v~ 382 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLN----------------PKQVEYLINQKHIYLL 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC----------------HHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC----------------HHHHHHHHHhCCEEec
Confidence 788899999999999999999873 488888999999998652 3567777878899863
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=362.10 Aligned_cols=341 Identities=16% Similarity=0.152 Sum_probs=270.5
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCC-CeEEcCCCCC-CCCCh----HHHHHHHHHHHH---cCCCCCCCCCCCHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGV-SVIRLAAGEP-DFDTP----VLIAEAGINAIR---EGFTRYTPNAGTLE 136 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~L~~g~~-~~~~p----~~v~~a~~~~~~---~~~~~Y~~~~G~~~ 136 (429)
|++..++...++..+..+. .+++..+. .+|+|+.|.+ ++..+ +.+.+++.+... .....|.+..|.++
T Consensus 22 ~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~ 98 (448)
T 3meb_A 22 MSVFSGFPASPPDAILNLT---VLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPL 98 (448)
T ss_dssp CCTTTTCCCCCCCTTHHHH---HHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHH
T ss_pred hhHHhcCCCCCCChHHHHH---HHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHH
Confidence 4456677777777555544 44445554 4799999998 76554 455555544431 34578999999999
Q ss_pred HHHHHHHHHHhhcCCC---CCCCcEEE--ecChHHHHHH--HHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEE
Q 014172 137 LRSAICHKLKEENGLS---YTPDQILV--SNGAKQSILQ--AVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVI 205 (429)
Q Consensus 137 lr~~ia~~l~~~~g~~---~~~~~i~~--t~G~~~al~~--~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~ 205 (429)
+|+++++++ +|.. +++++|++ |+|+++++.+ .+..++.+||+|++++|+|.+|...++ ..|++++.
T Consensus 99 lr~~ia~~l---~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~ 175 (448)
T 3meb_A 99 FLEAAQFLM---FGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKE 175 (448)
T ss_dssp HHHHHHHHH---HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEE
T ss_pred HHHHHHHHh---cCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEE
Confidence 999999998 3533 22689999 9999999987 556778899999999999999999999 99999999
Q ss_pred ecCCCCC-CCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC--
Q 014172 206 LPTRISE-NFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-- 279 (429)
Q Consensus 206 v~~~~~~-~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~-- 279 (429)
+|+..++ ++.+|++.+++.+++ +++++++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++.
T Consensus 176 ~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~-~~~li~Deay~~~~~~~~~~ 254 (448)
T 3meb_A 176 YTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEK-KHIAFFDSAYQGFATGSFEA 254 (448)
T ss_dssp ECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTSSSCHHH
T ss_pred EeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCCccc
Confidence 9985444 688999999999873 567778899999999999999999999999999 999999999999887651
Q ss_pred CCCccccCCCCCCceEEEeccChhcccccceeeEE--Ec--------C-H----HHHHHHHHHhhcccCCCchHHHHHHH
Q 014172 280 THTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI--AG--------P-K----HFVAACNKIQSQFTSGASSISQKAGV 344 (429)
Q Consensus 280 ~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v--~~--------~-~----~~~~~l~~~~~~~~~~~~~~~q~aa~ 344 (429)
...++..+....+++++++||||.||++|+|+||+ ++ + + ++++.+....+....+++.++|.++.
T Consensus 255 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~ 334 (448)
T 3meb_A 255 DAFAVRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQ 334 (448)
T ss_dssp HTHHHHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred CchhHHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHH
Confidence 12233333233578899999999999999999998 66 4 4 67777777667777789999999999
Q ss_pred HHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHhccC--CC------ceeecCCceEEEEEecCCccCCcccCCCCCCCh
Q 014172 345 AALGLGYAGG---EVVSKMVKAFRERRDFLVKSFGEL--EG------VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENS 413 (429)
Q Consensus 345 ~~l~~~~~~~---~~~~~~~~~~~~~r~~l~~~L~~l--~g------~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~ 413 (429)
.+|....... +++++++++++++|+.+.+.|+++ ++ +.+..|+++||+|+.++
T Consensus 335 ~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------- 398 (448)
T 3meb_A 335 VIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT---------------- 398 (448)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC----------------
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC----------------
Confidence 9987621101 447888999999999999999886 56 77778999999998763
Q ss_pred HHHHHHHHHhCCeecC
Q 014172 414 ESLCRYLLDKAQVLLH 429 (429)
Q Consensus 414 ~~~~~~Ll~~~gV~v~ 429 (429)
.+++.+|++++||++.
T Consensus 399 ~~~~~~ll~~~gV~v~ 414 (448)
T 3meb_A 399 PEHVDYLKEKWSIYLV 414 (448)
T ss_dssp HHHHHHHHHHHCEEEC
T ss_pred HHHHHHHHHhCCEEEe
Confidence 3778888888899863
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=348.09 Aligned_cols=331 Identities=19% Similarity=0.345 Sum_probs=280.7
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFD--TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAI 141 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~--~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~i 141 (429)
.++++...+.++.+..+...+ .++++|+|+.|.++.. +++.+.+++.+.+.+. ...|++..|..++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~l 83 (397)
T 2zyj_A 9 AFGKGAGRIQASTIRELLKLT-----QRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFV 83 (397)
T ss_dssp HSCGGGGGCCCCHHHHHHHHH-----TSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHhhc-----cCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHH
Confidence 378888888877665554432 2457999999987643 5788999998887642 36788878999999999
Q ss_pred HHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHH
Q 014172 142 CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVL 221 (429)
Q Consensus 142 a~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l 221 (429)
++++ | +++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.+|.+++ .+|+++|
T Consensus 84 a~~~----g--~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~---~~d~~~l 154 (397)
T 2zyj_A 84 AEWI----G--VRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEE---GPDLDAL 154 (397)
T ss_dssp HHHH----T--SCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETT---EECHHHH
T ss_pred HHHh----C--CChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCCC---CCCHHHH
Confidence 9998 3 56789999999999999999999999999999999999999999999999999998642 2899999
Q ss_pred Hhhccc-CCcEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC--CCceEEE
Q 014172 222 ESKLTE-KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM--WERTLTV 297 (429)
Q Consensus 222 ~~~l~~-~~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~--~~~~i~~ 297 (429)
++++++ ++++|+ +++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++....++..+... .++++++
T Consensus 155 ~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~ 233 (397)
T 2zyj_A 155 EEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMER-GLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYL 233 (397)
T ss_dssp HHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEE
T ss_pred HHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEE
Confidence 999986 789885 799999999999999999999999999 99999999999998876544555554321 1688999
Q ss_pred eccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHHHHHHHHHhc
Q 014172 298 NGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG-EVVSKMVKAFRERRDFLVKSFG 376 (429)
Q Consensus 298 ~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~-~~~~~~~~~~~~~r~~l~~~L~ 376 (429)
+||||.++ +|+|+||+++++++++.+......+..+.+.++|.++.++|+. .. ++++++++.++++++.+.+.|+
T Consensus 234 ~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~~l~~~L~ 309 (397)
T 2zyj_A 234 GSFSKVLS-PGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKE---GFSERLERVRRVYREKAQAMLHALD 309 (397)
T ss_dssp EESTTTTC-GGGCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTT---THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccc-ccceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999999998877666667899999999999986 23 6788899999999999999998
Q ss_pred c-CC-CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 377 E-LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 377 ~-l~-g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ +| |+++..|.+|+|+|++++.. .+..+++++|+++ ||.+
T Consensus 310 ~~~~~g~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~~l~~~-gi~v 351 (397)
T 2zyj_A 310 REVPKEVRYTRPKGGMFVWMELPKG-----------LSAEGLFRRALEE-NVAF 351 (397)
T ss_dssp HHSCTTSEECCCSBSSEEEEECSTT-----------CCHHHHHHHHHHT-TEEE
T ss_pred HHCCCCeEEccCCccEEEEEEcCCC-----------CCHHHHHHHHHHC-CCEE
Confidence 7 57 69988889999999999742 2688999999887 9876
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=354.68 Aligned_cols=344 Identities=15% Similarity=0.124 Sum_probs=273.0
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC-CC----CChHHHHHHHHH-HHHcC-CCCCCCCCCCHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP-DF----DTPVLIAEAGIN-AIREG-FTRYTPNAGTLELRS 139 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~-~~----~~p~~v~~a~~~-~~~~~-~~~Y~~~~G~~~lr~ 139 (429)
++++++..++++.+..+...++.. .++++|+|+.|.+ ++ .+++.+.+++.+ .+..+ ..+|++..|..++|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~ 80 (412)
T 1yaa_A 3 TLFNNIELLPPDALFGIKQRYGQD--QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTS 80 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHHHHHTC--CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred chhccCcccCCCcHHHHHHHHhcC--CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHH
Confidence 356778888888777766655432 4677999999986 33 356889999988 76532 457988899999999
Q ss_pred HHHHHHHhhcCCCCCCCcEEE--ecChHHHHHHHH--HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCC
Q 014172 140 AICHKLKEENGLSYTPDQILV--SNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215 (429)
Q Consensus 140 ~ia~~l~~~~g~~~~~~~i~~--t~G~~~al~~~l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 215 (429)
++++++.+.+|..+++++|++ |+|+++++.+++ ..++.+||+|++++|+|.+|...++..|++++.+++..++++.
T Consensus 81 ~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 160 (412)
T 1yaa_A 81 NAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCc
Confidence 999999766665567889999 999999999873 4455799999999999999999999999999999983234577
Q ss_pred CCHHHHHhhcccC--CcEEE-EcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC--CCCCccccCCCC
Q 014172 216 LDPKVLESKLTEK--SRLLI-LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP--ATHTSFASLPGM 290 (429)
Q Consensus 216 ~d~e~l~~~l~~~--~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~--~~~~~~~~~~~~ 290 (429)
+|++.+++.++++ .++++ +++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++ ....++..+...
T Consensus 161 ~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 1yaa_A 161 LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCcccchhHHHHHHHhc
Confidence 9999999998653 34454 599999999999999999999999999 99999999999988764 122233333222
Q ss_pred CC---ceEEEeccChhcccccceeeEEE--c-----CHH----HHHHHHHHhhcccCCCchHHHHHHHHHHhcCCC---C
Q 014172 291 WE---RTLTVNGFSKAFAMTGWRLGYIA--G-----PKH----FVAACNKIQSQFTSGASSISQKAGVAALGLGYA---G 353 (429)
Q Consensus 291 ~~---~~i~~~S~SK~~~~~G~R~G~v~--~-----~~~----~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~---~ 353 (429)
.+ ++++++||||.+|++|+|+||++ + +++ +++.+.........+++.+.|.++.++|+.... .
T Consensus 240 ~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 319 (412)
T 1yaa_A 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319 (412)
T ss_dssp TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHH
Confidence 34 89999999999998899999998 7 566 777777755555566789999999999986210 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 354 GEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.+++++++++++++++++.+.|+++. ++++..|++|+|+|+.++ ...+ .++++++||.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~~~l~~~gi~v~ 382 (412)
T 1yaa_A 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT---------------PQMV-KRLEETHAVYLV 382 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC---------------HHHH-HHHHHHHCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC---------------HHHH-HHHHHhCCEEec
Confidence 25788999999999999999999873 388888999999997653 3444 777777799863
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=352.42 Aligned_cols=341 Identities=14% Similarity=0.115 Sum_probs=258.7
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCC---CCC--CChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~---~~~--~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (429)
.++..++++.+..+...+... .++++|+|+.|. ++. ++++.+.+++.+.+.+ ...+|++..|..+||+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (396)
T 2q7w_A 3 ENITAAPADPILGLADLFRAD--ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp TTCCCCCC-------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred cccccCCCchHHHHHHHHhcc--CCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHH
Confidence 456667777666655544432 346789999998 333 4468999999887764 35679889999999999999
Q ss_pred HHHhhcCCCCCCCcEEE--ecChHHHHHHHHHHh--cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHH
Q 014172 144 KLKEENGLSYTPDQILV--SNGAKQSILQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 219 (429)
++....+.++++++|++ |+|+++++.++++.+ +.+||+|+++.|+|.+|...++..|++++.+++++++++.+|++
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 160 (396)
T 2q7w_A 81 LLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHH
Confidence 99654443345789998 999999999998766 46999999999999999999999999999999865456789999
Q ss_pred HHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCC-CCCCccccCCCCCCceE
Q 014172 220 VLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAP-ATHTSFASLPGMWERTL 295 (429)
Q Consensus 220 ~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~-~~~~~~~~~~~~~~~~i 295 (429)
.+++.+++ +++++++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++ ....++..+....++++
T Consensus 161 ~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (396)
T 2q7w_A 161 ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELI 239 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecccccccCCccchhHHHHHHHhcCCcEE
Confidence 99999874 467778899999999999999999999999999 99999999999988753 12223433332247899
Q ss_pred EEeccChhcccccceeeEEEc---CH----HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHHHH
Q 014172 296 TVNGFSKAFAMTGWRLGYIAG---PK----HFVAACNKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFR 365 (429)
Q Consensus 296 ~~~S~SK~~~~~G~R~G~v~~---~~----~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~~~ 365 (429)
+++||||.+|++|+|+||+++ ++ ++++.+.........+++.++|.++.++|+.... ..++++++++.++
T Consensus 240 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 319 (396)
T 2q7w_A 240 VASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQ 319 (396)
T ss_dssp EEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHH
T ss_pred EEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999986 55 4555555444444555699999999999875100 0367888899999
Q ss_pred HHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 366 ERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 366 ~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
++++.+.+.|+++. ++++..|++|+|+|++++ . +++.++++++||.+.
T Consensus 320 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~---------------~-~~~~~~l~~~gv~v~ 370 (396)
T 2q7w_A 320 RMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT---------------K-EQVLRLREEFGVYAV 370 (396)
T ss_dssp HHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC---------------H-HHHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC---------------H-HHHHHHHHhcCeeec
Confidence 99999999999873 388888999999998663 2 455666667799863
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=349.40 Aligned_cols=323 Identities=19% Similarity=0.349 Sum_probs=264.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-----------cCCCCCCCCCCCHHHHHHHHHHHHhhcCCC--CCCCcEEEec
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-----------EGFTRYTPNAGTLELRSAICHKLKEENGLS--YTPDQILVSN 162 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~~i~~t~ 162 (429)
..|+|+.|++++++| .+.+++.+... ....+|++..|..+||+++++++.+.+|.. +++++|++|+
T Consensus 37 ~~i~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~ 115 (428)
T 1iay_A 37 GVIQMGLAENQLCLD-LIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp SBEECSSCCCCSSHH-HHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred ceeeeccccchhhHH-HHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence 589999999887654 77777764210 113578777789999999999999888865 6789999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH-HHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEc
Q 014172 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA-RIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILC 235 (429)
Q Consensus 163 G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~ 235 (429)
|+++++..++++++++||+|++++|+|.++...+ ...|++++.+|++.+++|.+|++.+++++++ ++++|+++
T Consensus 116 G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~ 195 (428)
T 1iay_A 116 GATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195 (428)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEc
Confidence 9999999999999999999999999999998755 4789999999987656678999999998863 68999999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-------CCceEEEeccChhccccc
Q 014172 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-------WERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 236 ~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-------~~~~i~~~S~SK~~~~~G 308 (429)
+||||||.+++.+++++|+++|++| |++||+||+|.++.|++....++..+... .++++++.||||.+|++|
T Consensus 196 ~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G 274 (428)
T 1iay_A 196 NPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHC-CeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC
Confidence 9999999999999999999999999 99999999999988876444444444332 578999999999999999
Q ss_pred ceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 309 WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 309 ~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
+|+||+++ ++++++.+.+.... .+.+.++|.++..+|+.....+++++++++.++++++++.+.|+++ |+++.+++
T Consensus 275 lr~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~ 351 (428)
T 1iay_A 275 FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN 351 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred ceEEEEEeCCHHHHHHHHHHHhc--ccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCCC
Confidence 99999998 68888888766443 4578999999999988511012367889999999999999999998 88888888
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+|+|++++..... . ...+..+++++|++++||.+
T Consensus 352 ~g~~~~~~~~~~~~~--~---~~~~~~~l~~~l~~~~gi~v 387 (428)
T 1iay_A 352 AGLFCWMDLRPLLRE--S---TFDSEMSLWRVIINDVKLNV 387 (428)
T ss_dssp SSSEEEEECGGGCSS--S---SHHHHHHHHHHHHHTSCEEC
T ss_pred eeEEEEEechhhcCC--C---chhHHHHHHHHHHHhCCEEE
Confidence 899999999753100 0 00134589999988889976
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=348.82 Aligned_cols=343 Identities=13% Similarity=0.139 Sum_probs=261.1
Q ss_pred cccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCC---CCCCC--hHHHHHHHHHHHHcCCC-CCCCCCCCHHHH
Q 014172 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFDT--PVLIAEAGINAIREGFT-RYTPNAGTLELR 138 (429)
Q Consensus 65 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~---~~~~~--p~~v~~a~~~~~~~~~~-~Y~~~~G~~~lr 138 (429)
.|+.++++++++..+...|.......++.+.+.|||++|. ++-.+ .+.|.+|....+..+.. .|.|..|.++||
T Consensus 14 ~m~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr 93 (420)
T 4h51_A 14 AMTTAERWQKIQAQAPDVIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFI 93 (420)
T ss_dssp -CCHHHHHHTCCCCCCCHHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHH
T ss_pred hhhhhHHHhCCCCCCCChHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHH
Confidence 3556677777776666667666666666667799999993 33333 47888888887766554 599999999999
Q ss_pred HHHHHHHHhhcCCCCCCC--cEEEecChHHHHHHHHHHh----cCCCCEEEEcCCCCCChHHHHHHcCCEE-EEecCCCC
Q 014172 139 SAICHKLKEENGLSYTPD--QILVSNGAKQSILQAVLAV----CSPGDEVIIPAPFWVSYPEMARIADATP-VILPTRIS 211 (429)
Q Consensus 139 ~~ia~~l~~~~g~~~~~~--~i~~t~G~~~al~~~l~~l----~~~gd~Vlv~~p~y~~~~~~~~~~g~~~-~~v~~~~~ 211 (429)
+++++++. |.....+ ..+.|.|++.++..++..+ ++|||+|++++|+|++|..+++.+|++. ..++...+
T Consensus 94 ~aia~~~~---g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~ 170 (420)
T 4h51_A 94 DEAVKIIY---GNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDP 170 (420)
T ss_dssp HHHHHHHH---C---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEG
T ss_pred HHHHHHhc---CCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccc
Confidence 99999974 3222333 3456889998887666554 5799999999999999999999999974 45555555
Q ss_pred CCCCCCHHHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCC--cccc
Q 014172 212 ENFLLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT--SFAS 286 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~--~~~~ 286 (429)
+++.+|.+.+.+.+. ++++++++++||||||.+++.++|++|+++|++| ++++|+||+|.+|.|++.... .+..
T Consensus 171 ~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~-~~~~~~D~~Y~~~~~~~~~~~~~~~~~ 249 (420)
T 4h51_A 171 KTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAK-HHQVFFDSAYQGYASGSLDTDAYAARL 249 (420)
T ss_dssp GGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred cccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc-CceEeeehhhhhhccCCcccchHHHHh
Confidence 667789998887764 5677888899999999999999999999999999 999999999999998753222 2222
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEEcCHHH-------HHHHHHHhhcccCCCchHHHHHHHHHHhcCCCC---hHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-------VAACNKIQSQFTSGASSISQKAGVAALGLGYAG---GEV 356 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~-------~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~---~~~ 356 (429)
+....++++++.||||.|+|+|||+||++++.+. ...+....+...++++..+|.++..++.+.... ++.
T Consensus 250 ~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~ 329 (420)
T 4h51_A 250 FARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAE 329 (420)
T ss_dssp HHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHhhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2333578999999999999999999999875433 333444556677889999999999999863211 234
Q ss_pred HHHHHHHHHHHHHHHHHHhccC--CC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 357 VSKMVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~l--~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.++++|+++|+.+.+.|+++ ++ |.+..+++|||.|+.++ . +.++.| +++||++
T Consensus 330 ~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls---------------~-e~v~~L-~e~~Vy~ 387 (420)
T 4h51_A 330 LSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLS---------------K-AQCEYC-QNHNIFI 387 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCC---------------H-HHHHHH-HHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcC---------------H-HHHHHH-HhCCEEE
Confidence 6778999999999999999986 22 55567889999997653 2 445554 6679875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-43 Score=341.48 Aligned_cols=289 Identities=22% Similarity=0.355 Sum_probs=246.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++|+|+.|++++++|+.+ + + ....+|++ .+..++|+++|+++. +++++|++|+|+++++..+++++
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a----~-~~~~~Y~~-~~~~~lr~~la~~~~------~~~~~v~~~~G~~~ai~~~~~~~ 95 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--T----Q-QTLNRYPE-CQPKAVIENYAQYAG------VKPEQVLVSRGADEGIELLIRAF 95 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--C----C-CCTTSCCC-SSCHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--h----h-hhhccCCC-ccHHHHHHHHHHHhC------CChHHEEEcCCHHHHHHHHHHHH
Confidence 589999999999988766 1 2 24567855 468999999999983 56789999999999999999999
Q ss_pred cCCC-CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 176 CSPG-DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 176 ~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
+++| |+|+++.|+|.+|...++..|++++.+|++ ++|.+|+++++++++ ++++|++++||||||.+++.+++++|+
T Consensus 96 ~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~ 172 (356)
T 1fg7_A 96 CEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLL 172 (356)
T ss_dssp CCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred hCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 9999 999999999999999999999999999986 356799999999998 899999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
++|+ | |+++|+||+|.++.. ..++..+....++++++.||||.||++|+|+||+++++++++.+......+ +
T Consensus 173 ~~~~-~-~~~li~De~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~~--~ 244 (356)
T 1fg7_A 173 ELTR-G-KAIVVADEAYIEFCP----QASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPY--P 244 (356)
T ss_dssp HHHT-T-TCEEEEECTTGGGSG----GGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHHHHHHHHSCSS--C
T ss_pred HhCC-C-CCEEEEEccchhhcC----CCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHHHHHHHhcCCC--C
Confidence 9999 9 999999999998652 123334433467899999999999999999999999999999988776544 5
Q ss_pred CchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCC
Q 014172 335 ASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIEN 412 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~ 412 (429)
++.++|.++.++|+. .. ++++.+++++++|+++.+.|++++++....|.+++|+|++++ +
T Consensus 245 ~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~--------------~ 306 (356)
T 1fg7_A 245 LSTPVADIAAQALSP----QGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFK--------------A 306 (356)
T ss_dssp SCHHHHHHHHHHTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCCSSSEEEEEET--------------T
T ss_pred CCHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCCCCeEEEEECC--------------C
Confidence 889999999999975 33 388999999999999999999986543445667888999986 4
Q ss_pred hHHHHHHHHHhCCeec
Q 014172 413 SESLCRYLLDKAQVLL 428 (429)
Q Consensus 413 ~~~~~~~Ll~~~gV~v 428 (429)
..+++++|. ++||.+
T Consensus 307 ~~~l~~~L~-~~gI~v 321 (356)
T 1fg7_A 307 SSAVFKSLW-DQGIIL 321 (356)
T ss_dssp HHHHHHHHH-HTTEEC
T ss_pred HHHHHHHHH-HCCEEE
Confidence 678999985 559976
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=336.91 Aligned_cols=303 Identities=19% Similarity=0.274 Sum_probs=262.6
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.++++|+|+.|++++++|+.+.+++.+.+.. ..+| +..+..++|+++++++. +++++|++|+|+++++..++
T Consensus 14 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~~~g~~~a~~~~~ 85 (354)
T 3ly1_A 14 STDNPIRINFNENPLGMSPKAQAAARDAVVK-ANRY-AKNEILMLGNKLAAHHQ------VEAPSILLTAGSSEGIRAAI 85 (354)
T ss_dssp CSSSCEECSSCCCSSCCCHHHHHHHHHTGGG-TTSC-CHHHHHHHHHHHHHHTT------SCGGGEEEESHHHHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHhh-CcCC-CCCchHHHHHHHHHHhC------CChHHEEEeCChHHHHHHHH
Confidence 4567999999999999999999999988764 5677 56678899999999873 56789999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc--cCCcEEEEcCCCCCccCCCCHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~--~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
++++++||+|+++.|+|.++...++..|++++.++.++ ++.+|+++|+++++ +++++|++++|+||||.+++.+++
T Consensus 86 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l 163 (354)
T 3ly1_A 86 EAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVI 163 (354)
T ss_dssp HHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHH
T ss_pred HHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHH
Confidence 99999999999999999999999999999999999864 47799999999998 789999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhc
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ 330 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~ 330 (429)
++|+++| +| |+++|+||+|.++.+++.....+.......+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 164 ~~l~~~~-~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~ 241 (354)
T 3ly1_A 164 EPWIASK-PA-NTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG 241 (354)
T ss_dssp HHHHHTC-CT-TEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC
T ss_pred HHHHHhC-CC-CeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC
Confidence 9999999 89 999999999999887664333332223222889999999999999999999999999999998877665
Q ss_pred ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCC
Q 014172 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 331 ~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
.+++.+.|.++.++|+. .+++++.+++++++++.+.+.|+++ |+++.++. ++|+|++++.
T Consensus 242 --~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~-~~~~~~~~~~------------ 301 (354)
T 3ly1_A 242 --EKINFSGVDAALASMND----SAFITYSKKSNDVSRQILLKALEDL-KLPYLPSE-GNFVFHQLVV------------ 301 (354)
T ss_dssp --SCCCHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCC-SSEEEEECSS------------
T ss_pred --CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCeECCCC-ceEEEEECCC------------
Confidence 56899999999999985 5889999999999999999999988 88887554 4568999873
Q ss_pred CChHHHHHHHHHhCCeecC
Q 014172 411 ENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v~ 429 (429)
+..++++.|.++ ||.+.
T Consensus 302 -~~~~~~~~l~~~-gi~v~ 318 (354)
T 3ly1_A 302 -PLKDYQTHMADA-GVLIG 318 (354)
T ss_dssp -CHHHHHHHHHHT-TEECC
T ss_pred -CHHHHHHHHHHC-CEEEe
Confidence 578899988865 99863
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-42 Score=334.82 Aligned_cols=324 Identities=18% Similarity=0.263 Sum_probs=266.2
Q ss_pred CcccccccCCchhHHHH-HHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAIT-DQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
++++++.+.++...... +..++ ..++++|+|+.|++++++|+.+.+++.+.+. ....| +..+..++|+++++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~-~~~~y-~~~~~~~lr~~la~~~~ 81 (363)
T 3ffh_A 6 WKKSLAGLSSYKPGKREEEVMAE--LGLTKITKLSSNENPLGTSKKVAAIQANSSV-ETEIY-PDGWASSLRKEVADFYQ 81 (363)
T ss_dssp CCGGGTTCCC----CHHHHHHHT--TTCSCCEECSSCSCTTCCCHHHHHHHHTCBS-CCCBC-----CHHHHHHHHHHHT
T ss_pred hhHHHHhCCCCCCCCCHHHHHHh--cCCCceEEccCCCCCCCCCHHHHHHHHHHHH-HhhcC-CCcchHHHHHHHHHHhC
Confidence 56677777766433221 12111 1235799999999999999999999988654 34556 66789999999999984
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+++++|++|+|+++++..++++++++||+|+++.|+|..+...++..|++++.+|+++ ++.+|+++++++++
T Consensus 82 ------~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~ 153 (363)
T 3ffh_A 82 ------LEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAID 153 (363)
T ss_dssp ------CCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCC
T ss_pred ------CChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhcc
Confidence 5678999999999999999999999999999999999999999999999999999874 46799999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++++|++++|+||||.+++.+++.+|++.|++ |+++|+||+|.++.+ +. ..+........++++++.||||.+|+
T Consensus 154 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~--~~~li~De~~~~~~~-~~-~~~~~~~~~~~~~~i~~~s~sK~~g~ 229 (363)
T 3ffh_A 154 EKTTIVWICNPNNPTGNYIELADIQAFLDRVPS--DVLVVLDEAYIEYVT-PQ-PEKHEKLVRTYKNLIITRTFSKIYGL 229 (363)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSCT--TSEEEEECTTGGGCS-SC-CCCCGGGGGTCTTEEEEEESSSTTCC
T ss_pred cCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCC--CcEEEEeCchHhhcC-cc-ccCHHHHhhcCCCEEEEeechhhhcC
Confidence 999999999999999999998888888887754 799999999999887 43 23333443446899999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+..... .++++.+.+.++.++|+. .+++++.+++++++++++.+.|++++|+++.++
T Consensus 230 ~G~r~G~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~ 303 (363)
T 3ffh_A 230 ASARVGYGIADKEIIRQLNIVRP--PFNTTSIGQKLAIEAIKD----QAFIGECRTSNANGIKQYEAFAKRFEKVKLYPA 303 (363)
T ss_dssp SSCCCEEEEECHHHHHHHHHTCC--SCCCBHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHCTTCEECCC
T ss_pred chhceeeeecCHHHHHHHHHhCC--CCCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHhhCCCceECCC
Confidence 99999999999999999887765 456899999999999985 688999999999999999999999669998766
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+ +|+|++++. +..+++++|.++ ||.+
T Consensus 304 ~~-~~~~~~~~~-------------~~~~~~~~l~~~-gi~v 330 (363)
T 3ffh_A 304 NG-NFVLIDLGI-------------EAGTIFSYLEKN-GYIT 330 (363)
T ss_dssp CS-SEEEEECSS-------------CHHHHHHHHHHT-TEEC
T ss_pred CC-eEEEEECCC-------------CHHHHHHHHHHC-CeEE
Confidence 55 568999873 578999998875 8876
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=351.37 Aligned_cols=320 Identities=14% Similarity=0.159 Sum_probs=258.8
Q ss_pred HHHHHHHHhcCCCeEEcCCCCCC---CCChHHHHHHHHHHH--Hc--CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014172 84 TDQATALAQAGVSVIRLAAGEPD---FDTPVLIAEAGINAI--RE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPD 156 (429)
Q Consensus 84 ~~~~~~~~~~g~~~i~L~~g~~~---~~~p~~v~~a~~~~~--~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~ 156 (429)
...+.++...| .+|+|+.|+|+ +++|+.+.+++.+.+ .. ...+|++..|..+||++|++++. ++++
T Consensus 22 ~~~~~~l~~~~-~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~------~~~~ 94 (422)
T 3d6k_A 22 TAKYAELKAKN-LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALG------LPAD 94 (422)
T ss_dssp HHHHHHHHHTT-CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHT------CCGG
T ss_pred HHHHHHHhccC-CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhC------CChh
Confidence 34455555544 48999999998 777778888776542 12 24689999999999999999983 5788
Q ss_pred cEEEecChHHHH--HHHHHHhcCC------------CCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHH
Q 014172 157 QILVSNGAKQSI--LQAVLAVCSP------------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 222 (429)
Q Consensus 157 ~i~~t~G~~~al--~~~l~~l~~~------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 222 (429)
+|++|+|+++++ .+++.+++++ +|+|++++|+|..|...++..|++++.+|++.+ ++|++.++
T Consensus 95 ~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~ 171 (422)
T 3d6k_A 95 LVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDE---GPDMGVVR 171 (422)
T ss_dssp GEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT---EECHHHHH
T ss_pred HEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCCC---CCCHHHHH
Confidence 999999999987 6677777765 358999999999999999999999999998653 28999999
Q ss_pred hhccc-CCcEEE-EcCCCCCccCCCCHHHHHHHHHHHH-hCCCeEEEEccCCcc--cccCCCCCCccccC---CCCCCce
Q 014172 223 SKLTE-KSRLLI-LCSPSNPTGSVYPKNLLDEIARIVA-KHPRLLVLSDEIYEH--IIYAPATHTSFASL---PGMWERT 294 (429)
Q Consensus 223 ~~l~~-~~~~i~-l~~p~NPtG~~~~~~~l~~I~~~a~-~~~~i~vi~Deay~~--~~~~~~~~~~~~~~---~~~~~~~ 294 (429)
+.+++ ++++|+ +++||||||.+++.+++++|+++|+ +| |++||+||+|.+ +.+++....++..+ .+..+++
T Consensus 172 ~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~-~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (422)
T 3d6k_A 172 ELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAP-DFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRF 250 (422)
T ss_dssp HHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCE
T ss_pred HHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhcc-CCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcE
Confidence 99975 789988 6999999999999999999999999 99 999999999986 43333233344322 2236889
Q ss_pred EEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHH
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~~r~~l~~ 373 (429)
++++||||. +++|+|+||+++++++++.+.......+.+++.++|.++..+|+. +.. .++++++++.|+++++.+.+
T Consensus 251 i~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~ 328 (422)
T 3d6k_A 251 WFMSSTSKI-THAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGL-KAHMLKHAASLAPKFERVLE 328 (422)
T ss_dssp EEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcChhhh-cCcccceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999 679999999999999999999888777788999999999999975 111 46788889999999999888
Q ss_pred Hhcc----CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 374 SFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 374 ~L~~----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.|.+ ++++.+..|++|+|+|++++.. +..++.+. ++++||.+.
T Consensus 329 ~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~-l~~~gV~v~ 375 (422)
T 3d6k_A 329 ILDSRLSEYGVAKWTSPTGGYFISVDVVPG------------TASRVVEL-AKEAGIALT 375 (422)
T ss_dssp HHHHHHGGGTCEEECCCSBSSCEEEEESTT------------CHHHHHHH-HHHTTEECC
T ss_pred HHHHhcCcCCceEEeCCCcceEEEEECCCC------------CHHHHHHH-HHHCCeEEE
Confidence 8865 3346777899999999999742 45566654 556699863
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=346.06 Aligned_cols=323 Identities=20% Similarity=0.341 Sum_probs=267.3
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC------------CCCCCCCCCHHHHHHHHHHHHhhcC--CCCCCCcEEEe
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF------------TRYTPNAGTLELRSAICHKLKEENG--LSYTPDQILVS 161 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~------------~~Y~~~~G~~~lr~~ia~~l~~~~g--~~~~~~~i~~t 161 (429)
.+|+|+.+++.+. ++.+.+++.+...... .+|++..|..+||+++++++.+.+| +++++++|++|
T Consensus 39 ~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 117 (435)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred CeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEc
Confidence 5899999998776 6667777665432111 4698889999999999999986554 55678999999
Q ss_pred cChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH-HcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEE
Q 014172 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR-IADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 234 (429)
Q Consensus 162 ~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l 234 (429)
+|+++++..++.+++++||.|+++.|+|.++...+. ..|++++.++++.+++|.+|++.|++++++ ++++|++
T Consensus 118 ~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i 197 (435)
T 3piu_A 118 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 197 (435)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999999999999999999999999999998888 789999999998777788999999999875 7899999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC---------CCceEEEeccChhcc
Q 014172 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM---------WERTLTVNGFSKAFA 305 (429)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~---------~~~~i~~~S~SK~~~ 305 (429)
++|+||||.+++.+++++|+++|++| |+++|+||+|..+.|++....++..+... .+++++++||||.+|
T Consensus 198 ~~p~nptG~~~~~~~l~~l~~~~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g 276 (435)
T 3piu_A 198 TNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 276 (435)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSC
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccC
Confidence 99999999999999999999999999 99999999999998887655555544332 578899999999999
Q ss_pred cccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 306 MTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 306 ~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
++|+|+||+++ ++++++.+.+.... .+.+.+.|.++.+++......++++++++++++++++.+.+.|+++ |+++.
T Consensus 277 ~~G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 353 (435)
T 3piu_A 277 LPGFRVGAIYSNDDMVVAAATKMSSF--GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCL 353 (435)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHGGG--SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEC
T ss_pred CCceeEEEEEeCCHHHHHHHHHHhhc--CCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc
Confidence 99999999999 56777777765443 3467889999888887521113356788899999999999999998 89999
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++|+|+|++++..... ....+..+++++|++++||.+
T Consensus 354 ~~~~g~~~~~~l~~~~~~-----~~~~~~~~~~~~l~~~~gi~v 392 (435)
T 3piu_A 354 NGNAGLFCWVDMRHLLRS-----NTFEAEMELWKKIVYEVHLNI 392 (435)
T ss_dssp CCCSSSEEEEECGGGSSS-----SSHHHHHHHHHHHHHTSCEEC
T ss_pred CCCeeEEEEEEccccccc-----CCchhHHHHHHHHHHHCCEEE
Confidence 999999999999863110 000135689999999889986
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=365.71 Aligned_cols=317 Identities=24% Similarity=0.385 Sum_probs=275.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++|+|+.|++++++|+.+.+++.+.+......|++. ..++|+++++++.+.+|..+++++|++|+|+++++.++++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~ 109 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF 109 (392)
Confidence 789999999999999999999999887666778654 789999999999988887778899999999999999999999
Q ss_pred cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+++||+|+++.|+|.++...++..|++++.++++++ ++|.+|++.+++.++ +++++|++++|+||||.+++.+++++|
T Consensus 110 ~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l 189 (392)
T 3b1d_A 110 TKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQI 189 (392)
Confidence 999999999999999999999999999999998543 347789999999987 678999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC-CCceEEEeccChhcccccceeeEEEcCH-HHHHHHHHHhhcc
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM-WERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACNKIQSQF 331 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~~~~l~~~~~~~ 331 (429)
+++|++| |+++|+||+|.++.+++....++..+... .++++++.||||.+|++|+|+||+++++ ++++.+......+
T Consensus 190 ~~~~~~~-~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~ 268 (392)
T 3b1d_A 190 GHLCQKH-HVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQFKHQQLVN 268 (392)
Confidence 9999999 99999999999998877555566555432 5789999999999999999999999875 4888888776655
Q ss_pred c-CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCCCC
Q 014172 332 T-SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409 (429)
Q Consensus 332 ~-~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 409 (429)
+ .+++.++|.++.++|+. .+++++++++.++++++.+.+.|++ +||+++.+|+++|++|++++.. +
T Consensus 269 ~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~-~-------- 336 (392)
T 3b1d_A 269 NHHEVSSLGYIATETAYRY---GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQGTYLIWLDFSDY-G-------- 336 (392)
Confidence 4 35688899999888875 3678889999999999999999998 7899999999999999998742 0
Q ss_pred CCChHHHHHHHHHhCCeec
Q 014172 410 IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 410 ~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|++++||.+
T Consensus 337 -~~~~~l~~~l~~~~gi~v 354 (392)
T 3b1d_A 337 -LTDDALFTLLHDQAKVIL 354 (392)
Confidence 156789999886668876
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=327.76 Aligned_cols=298 Identities=17% Similarity=0.289 Sum_probs=257.9
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.|+++|+|+.|++++++|+.+.+++.+.+.. ...| +..+..++|+++++++. +++++|++|+|+++++..++
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~l~~~la~~~~------~~~~~i~~~~g~t~al~~~~ 95 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKN-LGVY-PDVNYRRLNKSIENYLK------LKDIGIVLGNGASEIIELSI 95 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHG-GGSC-CCTTCHHHHHHHHHHHT------CCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHH-hcCC-CCccHHHHHHHHHHHhC------CCcceEEEcCCHHHHHHHHH
Confidence 5678999999999999999999999998876 4567 66789999999999983 57889999999999999988
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
+++ |+|+++.|+|.++...++..|++++.++++.+++ ++++++++++++ ++++++++||||||.+++.+++++
T Consensus 96 ~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~ 168 (361)
T 3ftb_A 96 SLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMC--IDYEDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIH 168 (361)
T ss_dssp TTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSC--CCHHHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHH
T ss_pred HHc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccC--CCHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHH
Confidence 887 9999999999999999999999999999876544 678999999988 999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE-cCHHHHHHHHHHhhcc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQF 331 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~-~~~~~~~~l~~~~~~~ 331 (429)
|+++|++| |+++|+||+|.++.++ ...+........++++++.||||.+|++|+|+||++ +++++++.+......
T Consensus 169 i~~~~~~~-~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~~~~- 244 (361)
T 3ftb_A 169 VLKLAEEK-KKTIIIDEAFIEFTGD--PSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNP- 244 (361)
T ss_dssp HHHHHHHH-TCEEEEECSSGGGTCC--TTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTTSCT-
T ss_pred HHHHhhhc-CCEEEEECcchhhcCC--cccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhhCCC-
Confidence 99999999 9999999999998876 233444444456889999999999999999999998 899999998876553
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce-eecCCceEEEEEecCCccCCcccCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK-MSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~-~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
++++.+.+.++.++|+. .+++++.+++++++++.+.+.|++++++. +.++.++ |+|++++..
T Consensus 245 -~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~----------- 307 (361)
T 3ftb_A 245 -WNINCFAEMAAINCLKD----TNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHAN-FVLCRLENI----------- 307 (361)
T ss_dssp -TCSCHHHHHHHHHTSSC----HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEECCSSS-EEEEEESSS-----------
T ss_pred -CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecCCCCe-EEEEEcCCC-----------
Confidence 46889999999999884 68899999999999999999999998898 7666665 588888752
Q ss_pred CChHHHHHHHHHhCCeec
Q 014172 411 ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v 428 (429)
+..+++++|+++ ||.+
T Consensus 308 -~~~~l~~~l~~~-gi~v 323 (361)
T 3ftb_A 308 -SGEKLYDSLLKE-DIVI 323 (361)
T ss_dssp -CHHHHHHHHHTT-TEEC
T ss_pred -CHHHHHHHHHHC-CeEE
Confidence 688999999887 9976
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=348.43 Aligned_cols=309 Identities=14% Similarity=0.129 Sum_probs=257.8
Q ss_pred CCeEEcCCCCCCCCCh---HHHHHHH--HHHHHc---CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 95 VSVIRLAAGEPDFDTP---VLIAEAG--INAIRE---GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p---~~v~~a~--~~~~~~---~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
...|+|+.|.|+.... +.+.+++ .+++.+ ...+|++..|..+||++|++++. +++++|++|+|+++
T Consensus 33 ~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~ 106 (427)
T 3ppl_A 33 NLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLLG------VPVEQVLAGDASSL 106 (427)
T ss_dssp CCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHHT------SCGGGEEECSSCHH
T ss_pred CceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHhC------CCcceEEEeCCcHH
Confidence 3589999999986553 2466665 444433 24789888999999999999983 67899999999999
Q ss_pred HH--HHHHHHhcC--C----------CCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcE
Q 014172 167 SI--LQAVLAVCS--P----------GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRL 231 (429)
Q Consensus 167 al--~~~l~~l~~--~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~ 231 (429)
++ .++++++++ + ||+|++++|+|..|...++..|++++.+|++.+ ++|++.|+++++ +++++
T Consensus 107 al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~---g~d~~~l~~~l~~~~~~~ 183 (427)
T 3ppl_A 107 NIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED---GPDMDAVEELVKNPQVKG 183 (427)
T ss_dssp HHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT---EECHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC---CCCHHHHHHHHhcCCCeE
Confidence 99 578888877 6 899999999999999999999999999998753 289999999995 67888
Q ss_pred EEE-cCCCCCccCCCCHHHHHHHHHHH-HhCCCeEEEEccCCcccccCCCCC--CccccC---CCCCCceEEEeccChhc
Q 014172 232 LIL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATH--TSFASL---PGMWERTLTVNGFSKAF 304 (429)
Q Consensus 232 i~l-~~p~NPtG~~~~~~~l~~I~~~a-~~~~~i~vi~Deay~~~~~~~~~~--~~~~~~---~~~~~~~i~~~S~SK~~ 304 (429)
|++ ++||||||.+++.+++++|+++| ++| |++||+||+|.++.|++... .++..+ .+..+++++++||||.
T Consensus 184 v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~- 261 (427)
T 3ppl_A 184 MWVVPVFSNPTGFTVTEDVAKRLSAMETAAP-DFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKI- 261 (427)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHCCCSST-TCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTT-
T ss_pred EEECCCCCCCCCccCCHHHHHHHHHHHhhcC-CCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhc-
Confidence 885 48999999999999999999999 999 99999999999988876432 234333 1246899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhcc-C---C
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGE-L---E 379 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l---~ 379 (429)
+++|+|+||+++++++++.+.........+++.+.|.++..++.. +. ..+++++.++.|+++++.+.+.|.+ + +
T Consensus 262 ~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~ 340 (427)
T 3ppl_A 262 TLAGAGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEG-VRAVMRKHAASLAPKFNKVLEILDSRLAEYG 340 (427)
T ss_dssp SCTTSSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred cCcCccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 679999999999999999999888878888999999999999985 11 1467888999999999999888865 3 3
Q ss_pred CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+..|++|+|+|++++.. +..++.+.|. ++||.+
T Consensus 341 ~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l~-~~gv~v 376 (427)
T 3ppl_A 341 VAQWTVPAGGYFISLDVVPG------------TASRVAELAK-EAGIAL 376 (427)
T ss_dssp CCEECCCSBSSCEEEECSTT------------CHHHHHHHHH-HTTEEC
T ss_pred ceEEeCCCccEEEEEECCcc------------hHHHHHHHHH-HCCCEE
Confidence 57888899999999999853 5778887765 459986
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=334.85 Aligned_cols=289 Identities=21% Similarity=0.314 Sum_probs=256.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH
Q 014172 115 EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE 194 (429)
Q Consensus 115 ~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~ 194 (429)
+++.+.+..+...|++..|..+||+++++++. .+++++|++|+|+++++..++++++++||+|+++.|+|.++..
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~-----~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~ 120 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYT-----GVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYD 120 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSS-----SCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHH
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhc-----cCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHH
Confidence 35566666777899999999999999999873 2577899999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCccc
Q 014172 195 MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI 274 (429)
Q Consensus 195 ~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~ 274 (429)
.++..|++++.++++.+++|.+|++.+++++++++++|++++|+||||.+++.+++++|.++|++| |+++|+||+|..+
T Consensus 121 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~-~~~li~De~~~~~ 199 (375)
T 3op7_A 121 IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEV-GAYILSDEVYRSF 199 (375)
T ss_dssp HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECCSCCC
T ss_pred HHHHcCCEEEEEeccccCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc-CCEEEEEcccccc
Confidence 999999999999998777788999999999999999999999999999999999999999999999 9999999999998
Q ss_pred ccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCCh
Q 014172 275 IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 354 (429)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~ 354 (429)
.++ ...++... .+++++++||||.+|++|+|+||+++++++++.+.........+++.+.+.++..++.. .+
T Consensus 200 ~~~--~~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~ 271 (375)
T 3op7_A 200 SEL--DVPSIIEV---YDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAH---YQ 271 (375)
T ss_dssp SSS--CCCCHHHH---CTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHT---HH
T ss_pred ccc--CCCchhhh---cCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhc---cH
Confidence 765 22233322 57889999999999999999999999999999998888777788899999999998886 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++++.++.++++++.+.+.|++.+++.+..|.+++++|+.++.. .+..+++++|++++||.+
T Consensus 272 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ll~~~gi~v 334 (375)
T 3op7_A 272 EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVD-----------MPMEDFCLQLLQEHGVLL 334 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCS-----------SCHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 788899999999999999999998899998999999999988743 368899999987779976
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=339.01 Aligned_cols=338 Identities=15% Similarity=0.124 Sum_probs=266.2
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC---CC--CChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DF--DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~---~~--~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~ 143 (429)
+++..++++.+..+...+.. ..++++|+|+.|++ +. ++++.+.+++.+.+.. ...+|++..|..++|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (394)
T 2ay1_A 3 GNLKPQAPDKILALMGEFRA--DPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp GGCCCCCCCSHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred ccCccCCCccHHHHHHHHHh--CCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHH
Confidence 56777888877777665553 24667999999984 22 4568999999888764 45679888999999999999
Q ss_pred HHHhhcCCCCCCCcEEE--ecChHHHHHHHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHH
Q 014172 144 KLKEENGLSYTPDQILV--SNGAKQSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPK 219 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i~~--t~G~~~al~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e 219 (429)
++... + +++++|++ |+|+++++.++++.++. +||+|+++.|+|.++...++..|++++.++++.++++.+|++
T Consensus 81 ~~~~~-~--~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 157 (394)
T 2ay1_A 81 LILGD-G--LKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFE 157 (394)
T ss_dssp HHHGG-G--CCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHH
T ss_pred HHhCC-C--CCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHH
Confidence 98432 2 36789999 99999999999888754 999999999999999999999999999999865556789999
Q ss_pred HHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCC-CCCccccCCCCCCceE
Q 014172 220 VLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPA-THTSFASLPGMWERTL 295 (429)
Q Consensus 220 ~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~-~~~~~~~~~~~~~~~i 295 (429)
.+++.+++ +++++++++||||||.+++.+++++|+++|++| |+++|+||+|.++.+++. ...++..+....++++
T Consensus 158 ~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i 236 (394)
T 2ay1_A 158 GMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVL 236 (394)
T ss_dssp HHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEE
T ss_pred HHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEecCccccccCcccchHHHHHHhhcCCCEE
Confidence 99999864 356677799999999999999999999999999 999999999999877531 1223333322246789
Q ss_pred EEeccChhcccccceeeEEEc---CHHHHHHH----HHHhhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHHHH
Q 014172 296 TVNGFSKAFAMTGWRLGYIAG---PKHFVAAC----NKIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFR 365 (429)
Q Consensus 296 ~~~S~SK~~~~~G~R~G~v~~---~~~~~~~l----~~~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~~~ 365 (429)
+++||||.+|++|+|+||+++ ++++++.+ .........+++.++|.++.++|+.... ..+++++++++++
T Consensus 237 ~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~ 316 (394)
T 2ay1_A 237 IAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGML 316 (394)
T ss_dssp EEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 66654443 3333344445689999999999985100 0357888999999
Q ss_pred HHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 366 ERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 366 ~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
++++++.+.|+++. ++++..|++|+|+|++++ .. .+.++++++||.+.
T Consensus 317 ~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~-~~~~~l~~~gi~v~ 367 (394)
T 2ay1_A 317 RLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGAT---------------PE-QVKRIKEEFGIYMV 367 (394)
T ss_dssp HHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCC---------------HH-HHHHHHHHHCEECC
T ss_pred HHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCC---------------HH-HHHHHHHhCCEEec
Confidence 99999999998863 488878899999998764 23 44566666699863
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=328.50 Aligned_cols=301 Identities=21% Similarity=0.293 Sum_probs=253.6
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
..|+++|+|+.|++++++|+.+.+++.+.+.. ..+|+ ..|..++|+++++++. +++++|++|+|+++++..+
T Consensus 21 ~~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~~~y~-~~~~~~l~~~la~~~~------~~~~~v~~~~g~~~al~~~ 92 (364)
T 1lc5_A 21 ISPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERYP-DADYFHLHQALARHHQ------VPASWILAGNGETESIFTV 92 (364)
T ss_dssp SCGGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSCC-CTTCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHH
T ss_pred CCccceEEeccccCCCCCCHHHHHHHHHHHHH-hhcCC-CCCHHHHHHHHHHHHC------cCHHHEEECCCHHHHHHHH
Confidence 34567999999998888889999999887754 46784 4689999999999983 4678999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
++++ +||+|+++.|+|.++...++..|++++.+|++.++++.+ ++.+.+.++++++++++++||||||.+++.++++
T Consensus 93 ~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~ 169 (364)
T 1lc5_A 93 ASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQ 169 (364)
T ss_dssp HHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTCCEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCCCEEEEeCCCCCCCCCCCHHHHH
Confidence 9988 789999999999999999999999999999875445544 5766667777899999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE-cCHHHHHHHHHHhhc
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQ 330 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~-~~~~~~~~l~~~~~~ 330 (429)
+|+++|++| |+++|+||+|.++.+++. ++..+....++++++.||||.+|++|+|+||++ +++++++.+.....
T Consensus 170 ~i~~~~~~~-~~~li~De~~~~~~~~~~---~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~- 244 (364)
T 1lc5_A 170 AIADRCKSL-NINLILDEAFIDFIPHET---GFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM- 244 (364)
T ss_dssp HHHHHHHHH-TCEEEEECTTGGGSTTCC---CSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC-
T ss_pred HHHHHhhhc-CcEEEEECcChhhccCcc---chhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC-
Confidence 999999999 999999999999877532 222322335789999999999999999999999 99999998887654
Q ss_pred ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCC
Q 014172 331 FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 331 ~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
..+++.++|.++.++|+. .+++++.++.++++++.+.+.|+++||+++.++. ++|+|++++.
T Consensus 245 -~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-g~~~~~~~~~------------ 306 (364)
T 1lc5_A 245 -PWSVNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVYPGR-ANYLLLRCER------------ 306 (364)
T ss_dssp -TTCSCHHHHHHHHHGGGC----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCS-SSEEEEEESC------------
T ss_pred -CCCCCHHHHHHHHHHHhC----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCC-CeEEEEECCC------------
Confidence 346889999999999985 5789999999999999999999998889887554 5568888863
Q ss_pred CChHHHHHHHHHhCCeec
Q 014172 411 ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v 428 (429)
+..+++++|+++ ||.+
T Consensus 307 -~~~~l~~~l~~~-gi~v 322 (364)
T 1lc5_A 307 -EDIDLQRRLLTQ-RILI 322 (364)
T ss_dssp -TTCCHHHHHHTT-TEEC
T ss_pred -cHHHHHHHHHHC-CcEE
Confidence 244788888765 9876
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=335.92 Aligned_cols=315 Identities=18% Similarity=0.284 Sum_probs=250.3
Q ss_pred CCCeEEcCCCCCCCCCh--HHHHHHHHHHHHcCC-----CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 94 GVSVIRLAAGEPDFDTP--VLIAEAGINAIREGF-----TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p--~~v~~a~~~~~~~~~-----~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
++++|+|+.|.|+..++ +.+.+++.+.+.+.. ..|++..|..+||+++++++.+.+|+.+++++|++|+|+++
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~ 109 (417)
T 3g7q_A 30 TPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS 109 (417)
T ss_dssp --CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence 35799999999987553 567777777765432 47999999999999999999999999899999999999999
Q ss_pred HHHHHHHHhcCCCC-----EEEEc-CCCCCChHHHHHH------cCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEE
Q 014172 167 SILQAVLAVCSPGD-----EVIIP-APFWVSYPEMARI------ADATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 167 al~~~l~~l~~~gd-----~Vlv~-~p~y~~~~~~~~~------~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l 234 (429)
++++++++++++|| +|+++ .|+|..|...+.. .+..++.++.+. .++.+|++.++ +++++++|++
T Consensus 110 al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~~~~~~v~~ 186 (417)
T 3g7q_A 110 AFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IGEETGMICV 186 (417)
T ss_dssp HHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CCTTEEEEEE
T ss_pred HHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cccCceEEEE
Confidence 99999999999987 89997 9999998876532 234444554321 24668999998 6778999999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEE
Q 014172 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYI 314 (429)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v 314 (429)
++||||||.+++.+++++|+++|++| |+++|+||+|..+.. +...... .....++++++.|||| ++++|+|+||+
T Consensus 187 ~~p~NptG~~~~~~~~~~l~~~a~~~-~~~li~De~~~~~~~-~~~~~~~--~~~~~~~~i~~~s~sK-~~~~G~r~G~~ 261 (417)
T 3g7q_A 187 SRPTNPTGNVITDEELMKLDRLANQH-NIPLVIDNAYGVPFP-GIIFSEA--RPLWNPNIILCMSLSK-LGLPGSRCGII 261 (417)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHT-TCCEEEECTTCTTTT-CCBCSCC--CCCCCTTEEEEEESGG-GTCTTSCCEEE
T ss_pred CCCCCCCCCccCHHHHHHHHHHHHHc-CCEEEEeCCCccccc-ccccccc--ccCCCCCEEEEEechh-ccCCCcceEEE
Confidence 99999999999999999999999999 999999999986321 1111111 1123578999999999 68899999999
Q ss_pred EcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH-HHHHHHHHHHHHHHHhcc-CC--CceeecCCceE
Q 014172 315 AGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAF 390 (429)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~-~~~~~~~~r~~l~~~L~~-l~--g~~~~~p~~~~ 390 (429)
++++++++.+......++.+++.+.|.++..+++.... .+++.+ +++.|+++++.+.+.|.+ ++ |+.+..|++|+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ 340 (417)
T 3g7q_A 262 IANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDL-LRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAI 340 (417)
T ss_dssp ECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCH-HHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSS
T ss_pred EeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcch-HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcce
Confidence 99999999999888888888999999999999987432 344444 778899999999999877 55 47888899999
Q ss_pred EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+|++++.. + .+..+++++|.+ +||.+
T Consensus 341 ~~~~~~~~~-~---------~~~~~l~~~l~~-~gi~v 367 (417)
T 3g7q_A 341 FLWLWFKDL-P---------ITTELLYQRLKA-RGVLM 367 (417)
T ss_dssp EEEEECTTC-S---------SCHHHHHHHHHH-TTEEC
T ss_pred EEEEEcCCC-C---------CCHHHHHHHHHH-CCEEE
Confidence 999999852 0 268899998855 59976
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-41 Score=338.70 Aligned_cols=345 Identities=15% Similarity=0.220 Sum_probs=270.6
Q ss_pred ccCcccccccC-CchhHHHHHHHHHHHhcCCCeE-EcCCCCCCCCCh--HHHHHHHHHHHHc-------C-----CCCCC
Q 014172 66 VSLSPRVNAVK-PSKTVAITDQATALAQAGVSVI-RLAAGEPDFDTP--VLIAEAGINAIRE-------G-----FTRYT 129 (429)
Q Consensus 66 ~~~s~~~~~~~-~~~~~~~~~~~~~~~~~g~~~i-~L~~g~~~~~~p--~~v~~a~~~~~~~-------~-----~~~Y~ 129 (429)
|++|++..++. ++.+..++....+... .+++| +|+.|.|+..++ +.+.+++.+.+.+ . ...|+
T Consensus 2 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 80 (444)
T 3if2_A 2 MKFSKFGQKFTQPTGISQLMDDLGDALK-SDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYS 80 (444)
T ss_dssp CCCCHHHHHHHSCCHHHHHHHHHHHHHH-SSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCC
T ss_pred CCcchhhhhccCchhHHHHHHHHHhhhc-CchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccC
Confidence 45566655444 3555555544433322 36799 999999987543 5566666666554 2 25798
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--------------EEEEc-CCCCCChHH
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--------------EVIIP-APFWVSYPE 194 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd--------------~Vlv~-~p~y~~~~~ 194 (429)
+..|..+||+++|+++.+.+|+.+++++|++|+|+++++.+++++++++|| +|+++ .|+|..|..
T Consensus 81 ~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~ 160 (444)
T 3if2_A 81 NPQGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSD 160 (444)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTT
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhh
Confidence 899999999999999999999989999999999999999999999999998 78876 999999886
Q ss_pred H------HHHcCCEEEEecCCCCC---CCCCCHHHHHhh---cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC
Q 014172 195 M------ARIADATPVILPTRISE---NFLLDPKVLESK---LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (429)
Q Consensus 195 ~------~~~~g~~~~~v~~~~~~---~~~~d~e~l~~~---l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~ 262 (429)
. +...|.+++.++.+.++ ++.+|++.|+++ +++++++|++++||||||.+++.+++++|+++|++| |
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~-~ 239 (444)
T 3if2_A 161 VHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRY-D 239 (444)
T ss_dssp CCSSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-T
T ss_pred cccccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHC-C
Confidence 3 44568888888876422 357999999998 678899999999999999999999999999999999 9
Q ss_pred eEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHH
Q 014172 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKA 342 (429)
Q Consensus 263 i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~a 342 (429)
++||+||+|+.+.. +...... .....+++++++||||. +++|+|+||+++++++++.+.......+.+++.+.|.+
T Consensus 240 ~~li~De~~~~~~~-~~~~~~~--~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a 315 (444)
T 3if2_A 240 IPLIIDNAYGMPFP-NIIYSDA--HLNWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAI 315 (444)
T ss_dssp CCEEEECTTCTTTT-CCBCSCC--CCCCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CEEEEECCCCCccc-ccccccc--cccCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccCCCChHHHHH
Confidence 99999999986321 1111111 11235789999999997 77999999999999999999988877777889999999
Q ss_pred HHHHHhcCCCChHHHHH-HHHHHHHHHHHHHHHhcc-CC--CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHH
Q 014172 343 GVAALGLGYAGGEVVSK-MVKAFRERRDFLVKSFGE-LE--GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCR 418 (429)
Q Consensus 343 a~~~l~~~~~~~~~~~~-~~~~~~~~r~~l~~~L~~-l~--g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 418 (429)
+..++..... .+++.+ +++.|+++++.+.+.|.+ ++ ++.+..|++++|+|++++.. + .+..++++
T Consensus 316 ~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~-~---------~~~~~l~~ 384 (444)
T 3if2_A 316 ATPLVANDRI-KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDL-P---------ISTLDLYE 384 (444)
T ss_dssp HHHHHHTSHH-HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTC-S---------SCHHHHHH
T ss_pred HHHHHHcCch-hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCC-C---------CCHHHHHH
Confidence 9999986321 233444 677889999999888876 55 46777899999999999852 0 26889999
Q ss_pred HHHHhCCeec
Q 014172 419 YLLDKAQVLL 428 (429)
Q Consensus 419 ~Ll~~~gV~v 428 (429)
.|.+ +||.+
T Consensus 385 ~l~~-~gi~v 393 (444)
T 3if2_A 385 RLKA-KGTLI 393 (444)
T ss_dssp HHHH-TTEEC
T ss_pred HHHH-CCeEE
Confidence 8855 59976
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=344.78 Aligned_cols=328 Identities=15% Similarity=0.169 Sum_probs=264.5
Q ss_pred cccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCC---CCChHHHHHHHH--HHHHcC--CCCC-CCCCCCHHHHHHHH
Q 014172 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPD---FDTPVLIAEAGI--NAIREG--FTRY-TPNAGTLELRSAIC 142 (429)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~---~~~p~~v~~a~~--~~~~~~--~~~Y-~~~~G~~~lr~~ia 142 (429)
++..++++.+.++.+... . ...|+|+.|.|+ ++.|+.+.+++. +.+..+ ..+| ++..|..+||++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~----~-~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia 80 (423)
T 3ez1_A 6 ASRPALDLARQAYEAFKA----R-GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFA 80 (423)
T ss_dssp CCHHHHHHHHHHHHHHHH----H-TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhc----C-CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHH
Confidence 344444444444433332 2 358999999999 777888888875 444332 3789 88899999999999
Q ss_pred HHHHhhcCCCCCCCcEEEecChHHHHH--HHHHHhcC--C---------CCEEEEcCCCCCChHHHHHHcCCEEEEecCC
Q 014172 143 HKLKEENGLSYTPDQILVSNGAKQSIL--QAVLAVCS--P---------GDEVIIPAPFWVSYPEMARIADATPVILPTR 209 (429)
Q Consensus 143 ~~l~~~~g~~~~~~~i~~t~G~~~al~--~~l~~l~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 209 (429)
+++. +++++|++|+|+++++. ++++++++ + ||+|++++|+|..|...++..|++++.+|++
T Consensus 81 ~~~~------~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 154 (423)
T 3ez1_A 81 GYLD------VKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQ 154 (423)
T ss_dssp HHTT------SCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE
T ss_pred HHhC------CChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCC
Confidence 9973 57889999999999998 88999888 8 5999999999999999999999999999987
Q ss_pred CCCCCCCCHHHHHhhc--ccCCcEEEE-cCCCCCccCCCCHHHHHHHHHHH-HhCCCeEEEEccCCcccccCC-C--CCC
Q 014172 210 ISENFLLDPKVLESKL--TEKSRLLIL-CSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAP-A--THT 282 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l--~~~~~~i~l-~~p~NPtG~~~~~~~l~~I~~~a-~~~~~i~vi~Deay~~~~~~~-~--~~~ 282 (429)
.+ ++|++.|++++ .+++++|++ ++||||||.+++.+++++|+++| ++| |++||+||+|..+.|.+ . ...
T Consensus 155 ~~---g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~-~~~li~De~y~~~~~~~~~~~~~~ 230 (423)
T 3ez1_A 155 SD---GPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAP-DFTIFADDAYRVHHLVEEDRAEPV 230 (423)
T ss_dssp TT---EECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSST-TCEEEEECTTSSCBCCSSSCCCCC
T ss_pred CC---CCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhcc-CCEEEEECCcchhhcCCCCCCCCc
Confidence 53 38999999999 578899875 69999999999999999999999 999 99999999999766554 2 223
Q ss_pred ccccC---CCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc--CCCChHHH
Q 014172 283 SFASL---PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--GYAGGEVV 357 (429)
Q Consensus 283 ~~~~~---~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~--~~~~~~~~ 357 (429)
++..+ .+..+++++++||||. +++|+|+||+++++++++.+.........+++.+.|.++..+++. +.. .+++
T Consensus 231 ~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~-~~~~ 308 (423)
T 3ez1_A 231 NFVVLARDAGYPDRAFVFASTSKI-TFAGAGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGGL-EGLM 308 (423)
T ss_dssp CHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTHH-HHHH
T ss_pred chhhhhhccCCCCeEEEEeCchhh-ccCCcceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccchH-HHHH
Confidence 33332 1236899999999999 569999999999999999999888888888999999999999885 221 5678
Q ss_pred HHHHHHHHHHHHHHHHHhcc----CC-CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 358 SKMVKAFRERRDFLVKSFGE----LE-GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~----l~-g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.++.|+++++.+.+.|.+ ++ ++.+..|++|+|+|++++.. +..++.+.| +++||.+
T Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~------------~~~~~~~~l-~~~gv~v 371 (423)
T 3ez1_A 309 RDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP------------VADRVVKLA-EAAGVSL 371 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS------------CHHHHHHHH-HHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC------------cHHHHHHHH-HHCCcEE
Confidence 88888999998888877765 42 37788899999999999852 566666665 4559986
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=324.73 Aligned_cols=298 Identities=24% Similarity=0.406 Sum_probs=256.8
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
+++|+|+.|++++++|+.+.+++.+.+.+ ....|+. .+..++|++++++++ .. ++++|++|+|+++++..+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~g----~~-~~~~i~~~~g~t~a~~~~~~ 103 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVMQ----VP-AGMEVLLGNGSDEIISMLAL 103 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHHT----CC-TTCEEEEEEHHHHHHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHhC----CC-CcceEEEcCCHHHHHHHHHH
Confidence 46899999999999999999999998864 4567854 688999999999973 22 66899999999999999999
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
+++++||+|+++.|+|.++...++..|++++.+++++ ++.+|++.+++++++ ++++|++++||||||.+++.+++++
T Consensus 104 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~ 181 (367)
T 3euc_A 104 AAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEA 181 (367)
T ss_dssp HTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHH
T ss_pred HHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999864 567999999999988 8999999999999999999999999
Q ss_pred HHHHHHhCC-CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc
Q 014172 253 IARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (429)
Q Consensus 253 I~~~a~~~~-~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~ 331 (429)
|+++|++|+ |+++|+||+|.++.+.+ ... .+ ...++++++.||||. +++|+|+||+++++++++.+......
T Consensus 182 i~~~~~~~~~~~~li~De~~~~~~~~~--~~~--~~-~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~- 254 (367)
T 3euc_A 182 IVRAAQGSVCRSLVVVDEAYQPFAQES--WMS--RL-TDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDKVRPP- 254 (367)
T ss_dssp HHHHTBTTSCBCEEEEECTTCCSSSCC--SGG--GG-GTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGGGCCS-
T ss_pred HHHhhhhcCCCcEEEEeCcchhhcccc--hHH--HH-hhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHHhCCC-
Confidence 999999873 59999999999866332 111 12 235788999999999 88999999999999999888776543
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (429)
++++.++|.++..+|+. .+++++.+++++++++.+.+.|+++||+++. +.+++|+|++++
T Consensus 255 -~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~-~~~~~~~~~~~~-------------- 314 (367)
T 3euc_A 255 -YNVNVLTEATALFALEH----VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF-PSAANFLLARVP-------------- 314 (367)
T ss_dssp -SCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC-CCSSSEEEEECS--------------
T ss_pred -CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-CCCCeEEEEECC--------------
Confidence 45899999999999985 6789999999999999999999999899865 556677899886
Q ss_pred ChHHHHHHHHHhCCeec
Q 014172 412 NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~v 428 (429)
+..++.++|.+ +||.+
T Consensus 315 ~~~~l~~~l~~-~gi~v 330 (367)
T 3euc_A 315 DAAQTFDRLLA-RKVLI 330 (367)
T ss_dssp CHHHHHHHHHT-TTEEC
T ss_pred CHHHHHHHHHH-CCeEE
Confidence 46788888754 59976
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-40 Score=321.95 Aligned_cols=299 Identities=22% Similarity=0.354 Sum_probs=254.3
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
.|+|+.|++++++|+.+.+++.+.+.+. ..+|++..+ .++|+++++++.+.+|..+++++|++|+|+++++..+++
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~ 110 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQ 110 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHH
Confidence 3999999999989999999999988652 567866555 899999999999988887788999999999999999999
Q ss_pred HhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 174 ~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
+++++||+|++++|+|+++...++..|++++.+|.+ +++.+|++.+++++++ ++++|++++|+||||.+++ +++
T Consensus 111 ~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---~~~ 185 (369)
T 3cq5_A 111 AFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTS---LDD 185 (369)
T ss_dssp HHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCC---HHH
T ss_pred HhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC---HHH
Confidence 999999999999999999999999999999999965 4467999999999987 8999999999999999999 555
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC-ceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~-~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~ 331 (429)
+.++|+.+ ++++|+||+|.++.++ .+...+....+ +++++.||||.+|++|+|+||+++++++++.+......
T Consensus 186 l~~l~~~~-~~~li~De~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~- 259 (369)
T 3cq5_A 186 VERIINVA-PGIVIVDEAYAEFSPS----PSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRLP- 259 (369)
T ss_dssp HHHHHHHC-SSEEEEECTTGGGCCS----CCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSCT-
T ss_pred HHHHHHhC-CCEEEEECCchhhcCC----cchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCCC-
Confidence 66666677 7999999999987653 23333323345 89999999999999999999999999999888776544
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (429)
++++.+.|.++.++|+. .+++++.+++++++++.+.+.|++. |+++.++ .++|+|++++ .
T Consensus 260 -~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~-~~~~~~~~~~-~------------ 319 (369)
T 3cq5_A 260 -YHLSALSQAAAIVALRH----SADTLGTVEKLSVERVRVAARLEEL-GYAVVPS-ESNFVFFGDF-S------------ 319 (369)
T ss_dssp -TCSCHHHHHHHHHHHHT----HHHHHTHHHHHHHHHHHHHHHHHHH-TCEEECC-SSSEEEEECC-S------------
T ss_pred -CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHhC-CCEECCC-CCeEEEEECC-C------------
Confidence 35889999999999985 5788899999999999999999886 8888754 4566888886 1
Q ss_pred ChHHHHHHHHHhCCeec
Q 014172 412 NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~v 428 (429)
+..+++++|.+ +||.+
T Consensus 320 ~~~~l~~~l~~-~gi~v 335 (369)
T 3cq5_A 320 DQHAAWQAFLD-RGVLI 335 (369)
T ss_dssp SHHHHHHHHHH-TTEEC
T ss_pred CHHHHHHHHHH-CCEEE
Confidence 67889998865 59876
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=349.12 Aligned_cols=320 Identities=22% Similarity=0.314 Sum_probs=257.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCCCCHHHHHHHHHHHHhh-cC-CCCC-CCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEE-NG-LSYT-PDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~l~~~-~g-~~~~-~~~i~~t~G~~~al~~~ 171 (429)
++|+|+.|.++++ |+.+++++.+.+.. ..|+ +..|..++|+++++++.+. ++ +.+. +++|++|+|+++++..+
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~--~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~ 180 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVA--NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYA 180 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHH
Confidence 3789999999986 66666666666654 3454 7889999999999999766 34 4555 47999999999999999
Q ss_pred HHH-----hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC--CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCC
Q 014172 172 VLA-----VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (429)
Q Consensus 172 l~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~ 244 (429)
+.+ ++++||+|+++.|+|.+|...++..|++++.++++. ++++.+|++.|++++++++++|++++||||||.+
T Consensus 181 ~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~~p~NPtG~~ 260 (533)
T 3f6t_A 181 FHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVVNPTNPTSKE 260 (533)
T ss_dssp HHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEESSCTTTCBC
T ss_pred HHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEeCCCCCCccc
Confidence 998 789999999999999999999999999999999875 5678899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH-hCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH----
Q 014172 245 YPKNLLDEIARIVA-KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---- 319 (429)
Q Consensus 245 ~~~~~l~~I~~~a~-~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~---- 319 (429)
++.+++++|+++|+ +| +++||+||+|.++.++. .++.... .+++++++||||.+|++|+|+||++++++
T Consensus 261 ~~~~~l~~l~~la~~~~-~~~li~De~y~~~~~~~---~~~~~~~--~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~ 334 (533)
T 3f6t_A 261 FDTNALNAIKQAVEKNP-KLMIISDEVYGAFVPNF---KSIYSVV--PYNTMLVYSYSKLFGCTGWRLGVIALNEKNVFD 334 (533)
T ss_dssp CCHHHHHHHHHHHHHCT-TCEEEEECTTGGGSTTC---CCHHHHS--GGGEEEEEESHHHHTCGGGCEEEEEEESSCHHH
T ss_pred cCHHHHHHHHHHHHhCC-CCEEEEcCCccccccCc---cCHhhcC--CCCEEEEecCcccCCCcccceEEEEECcHHHHH
Confidence 99999999999999 68 99999999999887642 2333332 47899999999999999999999999776
Q ss_pred -HHHHH--------------------------------HHHhhcccCCCchHHHHH----HHHHHhc----CCCChHHHH
Q 014172 320 -FVAAC--------------------------------NKIQSQFTSGASSISQKA----GVAALGL----GYAGGEVVS 358 (429)
Q Consensus 320 -~~~~l--------------------------------~~~~~~~~~~~~~~~q~a----a~~~l~~----~~~~~~~~~ 358 (429)
+++.+ .+.......+++.+.|.+ +..+|.. +. ..++++
T Consensus 335 ~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~-~~~~~~ 413 (533)
T 3f6t_A 335 DNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGS-DDPYID 413 (533)
T ss_dssp HHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGT-BCHHHH
T ss_pred HHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccc-hHHHHH
Confidence 33322 334445566788889988 4556641 11 367899
Q ss_pred HHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccC--C----CCCCChHHHHHHHHHhCCeec
Q 014172 359 KMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG--F----GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 359 ~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~--~----~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++.|+++++.+.+.|. + ++.+..|+++||+|++++...... .+ + ....++.+++.+|++++||.+
T Consensus 414 ~~~~~~~~r~~~l~~~L~-~-~~~~~~~~~g~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v 486 (533)
T 3f6t_A 414 IARKLVSERYDQLHDAMQ-A-PKDETDTNTHYYSLIDIYRLAEKI-YGKEFRDYLTNNFEQVDFLLKLAEKNGVVL 486 (533)
T ss_dssp HHHHHHHHHHHHHHHHHT-C-CCCCSTTBCCSEEEEEHHHHHHHH-HCHHHHHHHHHHCCHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHhcC-C-CccccCCCceEEEEEehHhhhhhc-cchHHHHHhhccCCHHHHHHHHHHhCCEEE
Confidence 999999999999999998 6 788888999999999997410000 00 0 000157789999998889986
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=346.24 Aligned_cols=345 Identities=20% Similarity=0.301 Sum_probs=259.3
Q ss_pred ccccccCC--chhHHHHHHHHHHHh-cCC----CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 014172 70 PRVNAVKP--SKTVAITDQATALAQ-AGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 70 ~~~~~~~~--~~~~~~~~~~~~~~~-~g~----~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia 142 (429)
.++..+++ +.+..+.+....... +|. .+|+|+.|+++++ ++.+.+++.+.+.. .+|++..|..++|++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~l~~g~~~~~-~~~~~~al~~~~~~--~~Y~~~~g~~~lr~~ia 148 (546)
T 2zy4_A 72 VGVGGLAKIDGIEGRFERYIAENRDQEGVRFLGKSLSYVRDQLGLD-PAAFLHEMVDGILG--CNYPVPPRMLNISEKIV 148 (546)
T ss_dssp SCEEECCCSTTHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHH
T ss_pred hhhccCCccccchhHHHHHHHhcCCCCcchhHHhhhecccCCCCCC-ChHHHHHHHHhhhc--CCCCCCcCCHHHHHHHH
Confidence 34555655 555555554443321 111 2799999999874 56677777776643 68988889999999988
Q ss_pred HHH-HhhcCCCC---CCCcEEEecChHHHHHHHHHH-----hcCCCCEEEEcCCCCCChHHHHHHc--CCEEEEecCCCC
Q 014172 143 HKL-KEENGLSY---TPDQILVSNGAKQSILQAVLA-----VCSPGDEVIIPAPFWVSYPEMARIA--DATPVILPTRIS 211 (429)
Q Consensus 143 ~~l-~~~~g~~~---~~~~i~~t~G~~~al~~~l~~-----l~~~gd~Vlv~~p~y~~~~~~~~~~--g~~~~~v~~~~~ 211 (429)
+++ .+.++... ++++|++|+|+++++..++++ ++++||+|++++|+|+.|...+... |++++.++++++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~ 228 (546)
T 2zy4_A 149 RQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPS 228 (546)
T ss_dssp HHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGG
T ss_pred HHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcc
Confidence 765 44444322 468999999999999999988 5789999999999999999886654 689999999887
Q ss_pred CCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHH--HhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a--~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
++|.+|++.|++.+++++++|++++||||||.+++.+++++|+++| ++| |++||+||+|.++.++ ..++....
T Consensus 229 ~~~~~d~~~l~~~~~~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~-~~~ii~De~y~~~~~~---~~s~~~~~- 303 (546)
T 2zy4_A 229 LNWQYPDSELDKLKDPAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRP-DLMILTDDVYGTFADD---FQSLFAIC- 303 (546)
T ss_dssp GTTBCCHHHHGGGGSTTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCT-TCEEEEECTTGGGSTT---CCCHHHHC-
T ss_pred cCCCCCHHHHHHhhCCCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccC-CcEEEEeCcchhhccc---CcCHHHhC-
Confidence 7899999999998888899999999999999999999999999999 788 9999999999998753 33444432
Q ss_pred CCCceEEEeccChhcccccceeeEEEcCHH-HHHHHHHH-------------h-----------------------hccc
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAACNKI-------------Q-----------------------SQFT 332 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-~~~~l~~~-------------~-----------------------~~~~ 332 (429)
.+++|+++||||.+|++|+|+||++++++ +++.+.+. . ....
T Consensus 304 -~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 382 (546)
T 2zy4_A 304 -PENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHT 382 (546)
T ss_dssp -GGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGG
T ss_pred -CCCEEEEEeCccccCCCCcceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhcc
Confidence 37899999999999999999999999875 77766321 1 1223
Q ss_pred CCCchHHHHHH-----HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCC-cccC
Q 014172 333 SGASSISQKAG-----VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEG 406 (429)
Q Consensus 333 ~~~~~~~q~aa-----~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~-~~~~ 406 (429)
.+.+.+.|.++ .++++. .+.+++++++.|+++++.+.+.|. + ++.+.+|+++||+|++++..... ...+
T Consensus 383 ~~~s~~~Q~a~a~~a~~all~~---~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 457 (546)
T 2zy4_A 383 AGLSTPQQVQMALFSLFALMDE---ADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYTLIDLQDVTAKLYGEA 457 (546)
T ss_dssp CSSCHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEEEEEHHHHHHHHHCHH
T ss_pred CCCCcHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEEEEEHHHhhcccccHH
Confidence 46788888764 234444 367899999999999999999996 5 56667889999999998631000 0000
Q ss_pred C----CCCCChHHHHHHHHHhCCeec
Q 014172 407 F----GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 407 ~----~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ ....++.+++.++++++||.|
T Consensus 458 ~~~wl~~~~~~~~~l~~ll~~~gV~v 483 (546)
T 2zy4_A 458 FSEWAVKQSSTGDMLFRIADETGIVL 483 (546)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHSCCC
T ss_pred HHHHhhccCCHHHHHHHHHHHCCEEE
Confidence 0 000134566667777779876
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=317.02 Aligned_cols=312 Identities=20% Similarity=0.337 Sum_probs=256.3
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~ 143 (429)
.+++.++.++++..... ...|+++|+|+.|+|++++|+.+.+++.+.+.++ ...|+ ..+..+||+++++
T Consensus 5 ~~~~~~~~~~~~~~~~~-------~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~-~~~~~~lr~~la~ 76 (360)
T 3hdo_A 5 PLRQNIASMKGYIPGYQ-------PPDIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYP-SASSQKLREVAGE 76 (360)
T ss_dssp CCCHHHHHCCCCCCCCC-------CSCCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCC-CSSCHHHHHHHHH
T ss_pred hhHHHHHhcCCcCCCCC-------CccccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCC-CCchHHHHHHHHH
Confidence 45666667766643210 0235679999999999999999999999998765 56774 4577999999999
Q ss_pred HHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh
Q 014172 144 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
+++ +++++|++|+|+++++..++++++++||+|+++.|+|.++...++..|++++.++++. ++.+ +++++
T Consensus 77 ~~g------~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~ 146 (360)
T 3hdo_A 77 LYG------FDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPE 146 (360)
T ss_dssp HHT------CCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCS
T ss_pred HhC------cCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHh
Confidence 983 5788999999999999999999999999999999999999999999999999999853 3444 55544
Q ss_pred hcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 224 ~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
.+ +++++++++|+||||.+++ +++|.++|+++ |+++|+||+|.++. +.....+ ....++++++.||||.
T Consensus 147 ~~--~~~~v~i~~p~nptG~~~~---~~~l~~l~~~~-~~~li~De~~~~~~--~~~~~~~---~~~~~~~i~~~s~sK~ 215 (360)
T 3hdo_A 147 RY--EGKVFFLTTPNAPLGPSFP---LEYIDELARRC-AGMLVLDETYAEFA--ESNALEL---VRRHENVVVTRTLSKS 215 (360)
T ss_dssp SB--CSSEEEEESSCTTTCCCCC---HHHHHHHHHHB-SSEEEEECTTGGGS--SCCCTHH---HHHCSSEEEEEESTTT
T ss_pred hc--CCCEEEEeCCCCCCCCCcC---HHHHHHHHHHC-CCEEEEECChHhhC--CcchhHH---hccCCCEEEEecchHh
Confidence 43 4679999999999999999 66677788999 99999999999863 3222222 2235889999999999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+|++|+|+||+++++++++.+...... ++++.++|.++.++|+. .+++++.+++++++++.+.+.|+++ |+.+
T Consensus 216 ~g~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~ 288 (360)
T 3hdo_A 216 YSLAGMRIGLAIARPEVIAALDKIRDH--YNLDRLAQAACVAALRD----QAYLSECCRRIRETREWFTTELRSI-GYDV 288 (360)
T ss_dssp TSCTTSCCEEEECCHHHHHHHHHHSCS--CCSCHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEE
T ss_pred hcCCccceeeEeeCHHHHHHHHHhCCC--CCCCHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEE
Confidence 999999999999999999999887654 46899999999999985 6789999999999999999999998 8888
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+ .|+|+.++.. +..+++++|.++ ||.+
T Consensus 289 ~~~~~-~~~~~~~~~~------------~~~~l~~~l~~~-gi~v 319 (360)
T 3hdo_A 289 IPSQG-NYLFATPPDR------------DGKRVYDGLYAR-KVLV 319 (360)
T ss_dssp CCCSS-SEEEEECTTC------------CHHHHHHHHHHT-TEEC
T ss_pred cCCCc-cEEEEECCCC------------CHHHHHHHHHHC-CEEE
Confidence 75555 5588888742 688999888765 9986
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=309.40 Aligned_cols=289 Identities=20% Similarity=0.296 Sum_probs=237.4
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
...+++|+|+.|++++++|+.+.+++.+.+.. ..+| +..|..+||+++++++. +++++|++|+|+++++.++
T Consensus 13 ~~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~y-~~~~~~~lr~~la~~~~------~~~~~i~~t~G~~~~l~~~ 84 (337)
T 3p1t_A 13 RAAAQAVCLAFNENPEAVEPRVQAAIAAAAAR-INRY-PFDAEPRVMRKLAEHFS------CPEDNLMLVRGIDECFDRI 84 (337)
T ss_dssp -CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG-TTSC-CTTHHHHHHHHHHHHHT------SCGGGEEEESHHHHHHHHH
T ss_pred cCCCCceEeeCCCCCCCCCHHHHHHHHHhhhh-hccC-CCCchHHHHHHHHHHhC------cCHHHEEEeCCHHHHHHHH
Confidence 34567999999999999999999999987654 5678 56789999999999974 5678999999999999999
Q ss_pred HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 172 VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 172 l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
+.++ +||+|++++|+|.++...++..|++++.++++. ++.+|++.++++ .+++++++++||||||.+++ ++
T Consensus 85 ~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~~~---~~ 155 (337)
T 3p1t_A 85 SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--SRDDCVVLANPSNPTGQALS---AG 155 (337)
T ss_dssp HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--CTTEEEEEESSCTTTCCCCC---HH
T ss_pred HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--cCCCEEEEeCCCCCCCCCCC---HH
Confidence 8887 999999999999999999999999999999863 567999999987 46889999999999999999 55
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~ 331 (429)
+|.++|+++ +++ |+||+|.++.+.+. .. ....+++++++||||.+|++|+|+||+++++++++.+.+...
T Consensus 156 ~l~~l~~~~-~~~-ivDea~~~~~~~~~--~~----~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~-- 225 (337)
T 3p1t_A 156 ELDQLRQRA-GKL-LIDETYVDYSSFRA--RG----LAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQW-- 225 (337)
T ss_dssp HHHHHHHHC-SEE-EEECTTGGGSSCSS--SC----CCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTSC--
T ss_pred HHHHHHHhC-CcE-EEECCChhhccccc--cc----cccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhcC--
Confidence 666777888 874 55999998654332 11 122578899999999999999999999999999998877543
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (429)
..+++.+.|.++..+|+. .+++.+.++++.++|+.+.+.|+++ |+++.+++++| +|+..+
T Consensus 226 ~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~~-------------- 285 (337)
T 3p1t_A 226 FCNVGTLDLHALEAALDN----DRAREAHIAKTLAQRRRVADALRGL-GYRVASSEANF-VLVENA-------------- 285 (337)
T ss_dssp TTCSCHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCSSSE-EEEECT--------------
T ss_pred CCCCCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-cCEECCCCCeE-EEEEcC--------------
Confidence 346788999999988885 4566677778888899999999998 88888777776 566654
Q ss_pred ChHHHHHHHHHhCCeec
Q 014172 412 NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~v 428 (429)
+..++.+.| +++||.+
T Consensus 286 ~~~~~~~~l-~~~gi~v 301 (337)
T 3p1t_A 286 AGERTLRFL-RERGIQV 301 (337)
T ss_dssp TTHHHHHHH-HHTTEEC
T ss_pred CHHHHHHHH-HHCCeEE
Confidence 344666655 4559976
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=315.66 Aligned_cols=291 Identities=16% Similarity=0.277 Sum_probs=238.0
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.|+++|+|+.|++++++|+++.+++.+.+ .....|++..+ .+||+++++++. +++++|++|+|+++++.+++
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~t~g~~~al~~~~ 84 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENL-NCIRHYPEPDA-GTLRQMLAKRNS------VDNNAILVTNGPTAAFYQIA 84 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTG-GGGGSCCCTTC-HHHHHHHHHHTT------CCGGGEEEESHHHHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhH-hHHhcCCCCcH-HHHHHHHHHHhC------cCHHHEEEcCCHHHHHHHHH
Confidence 35689999999999999999999999887 44567866665 899999999873 57789999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecC-CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLD 251 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~ 251 (429)
++++ ||+|+++.|+|..+...++..|++++.+++ +.+++ +++ +++++|++++||||||.+++.++++
T Consensus 85 ~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~~--------~~~~~v~i~~p~nptG~~~~~~~l~ 152 (350)
T 3fkd_A 85 QAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGE--ADF--------SNMDFCWLCNPNNPDGRLLQRTEIL 152 (350)
T ss_dssp HHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGG--SCC--------TTCSEEEEESSCTTTCCCCCHHHHH
T ss_pred HHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCcccc--Ccc--------CCCCEEEEeCCCCCcCCCCCHHHHH
Confidence 9988 999999999999999999999999999998 54343 333 5789999999999999999988888
Q ss_pred HHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc
Q 014172 252 EIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF 331 (429)
Q Consensus 252 ~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~ 331 (429)
+|++.|++ .+||+||+|.++.+.+... ...+. ..+++++++||||.+|++|+|+||+++++++++.+......
T Consensus 153 ~l~~~~~~---~~li~Dea~~~~~~~~~~~--~~~~~-~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~- 225 (350)
T 3fkd_A 153 RLLNDHPD---TTFVLDQSYVSFTTEEVIR--PADIK-GRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFSTP- 225 (350)
T ss_dssp HHHHHCTT---SEEEEECTTTTSCSSCCCC--GGGGT-TCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCCT-
T ss_pred HHHHhCCC---CEEEEECchhhhccCcchh--hHHhh-cCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCCC-
Confidence 77777754 4999999999987765322 22222 36889999999999999999999999999999998876643
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~ 411 (429)
.+++.++|.++.++|+.. ..+.++.++.+ ++++.+.+.|+++||+++.++. ++|+|++++..
T Consensus 226 -~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~------------ 287 (350)
T 3fkd_A 226 -WAVNALAIEAAKFILIHP---AQFTLPIRKWQ-RNTVDFITALNRLDGVEVHPSG-TTFFLLRLKKG------------ 287 (350)
T ss_dssp -TCSCHHHHHHHHHHHHCT---TTTCCCHHHHH-HHHHHHHHHHHHSTTEEECCCS-SSEEEEEESSS------------
T ss_pred -CCCCHHHHHHHHHHHhCH---HHHHHHHHHHH-HHHHHHHHHHhcCCCcEECCCC-CcEEEEECCCC------------
Confidence 468999999999999863 33444444444 8899999999988899887555 45678988752
Q ss_pred ChHHHHHHHHHhCCeec
Q 014172 412 NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 412 ~~~~~~~~Ll~~~gV~v 428 (429)
+..+++++|++++||.+
T Consensus 288 ~~~~l~~~L~~~~gi~v 304 (350)
T 3fkd_A 288 TAAELKKYMLEEYNMLI 304 (350)
T ss_dssp CHHHHHHHHHHTTCEEC
T ss_pred CHHHHHHHHHHHCCEEE
Confidence 68899999998669986
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=327.26 Aligned_cols=295 Identities=18% Similarity=0.176 Sum_probs=235.0
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHH--Hc--CCCCCCCCCCC-----HHHHHHHHHHHHhhcCCCCCC-CcEEEec
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAI--RE--GFTRYTPNAGT-----LELRSAICHKLKEENGLSYTP-DQILVSN 162 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~--~~--~~~~Y~~~~G~-----~~lr~~ia~~l~~~~g~~~~~-~~i~~t~ 162 (429)
.++++|+|+.|.|++++|+.+.+++.+.. .. +..+|++..|. ++||++||++++ .+|+.+.+ ++|++|+
T Consensus 20 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t~ 98 (391)
T 3bwn_A 20 MSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVGT 98 (391)
T ss_dssp TTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEEE
T ss_pred CCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEeC
Confidence 45679999999999877777777653322 11 35679999998 999999999998 67888777 5999999
Q ss_pred ChHHHHHHHHHHhcCCCC----EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 163 GAKQSILQAVLAVCSPGD----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 163 G~~~al~~~l~~l~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
|+++++.+++++++++|| +|++++|+|..|...++..|++++.++++.+ + +. .+++++|++++||
T Consensus 99 G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~~-~--l~--------~~~~k~v~l~~p~ 167 (391)
T 3bwn_A 99 GSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDAW-G--FD--------KKGPYIELVTSPN 167 (391)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEEST-T--CC--------CCSCEEEEEESSC
T ss_pred ChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCHH-H--cC--------CCCCEEEEECCCC
Confidence 999999999999999999 9999999999999999999999998887542 2 22 2578999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc-C
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-P 317 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~ 317 (429)
||||.+++ +|++.++.+ +++||+||+|.+ + ...++.. ..+++|+++||||.||++|+|+||+++ +
T Consensus 168 NPtG~~~~-----~l~~~~~~~-~~~ii~De~y~~----~-~~~~l~~---~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 233 (391)
T 3bwn_A 168 NPDGTIRE-----TVVNRPDDD-EAKVIHDFAYYW----P-HYTPITR---RQDHDIMLFTFSKITGHAGSRIGWALVKD 233 (391)
T ss_dssp TTTCCCCC-----CCC-----C-CCEEEEECTTCS----T-TTSCCCC---CBCCSEEEEEHHHHHSCGGGCEEEEEECC
T ss_pred CCCchhHH-----HHHHHhhcC-CCEEEEeCCCCC----C-CCCcccc---CCCCeEEEEechhhcCCCccceEEEEecC
Confidence 99999997 344422222 399999999973 2 1222222 358899999999999999999999997 8
Q ss_pred HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC----
Q 014172 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYA-------GGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---- 386 (429)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~-------~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p---- 386 (429)
+++++.+.........+++.++|.++..+|+.+.. .+++++++++.|+++|+.+.+.|++++|+++..|
T Consensus 234 ~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~ 313 (391)
T 3bwn_A 234 KEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAF 313 (391)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEE
T ss_pred HHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccc
Confidence 99999998887766678999999999999986210 1467899999999999999999999877777544
Q ss_pred ---------CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 ---------QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+|+|++++. . +++.++++++||.+
T Consensus 314 ~~f~~~~~~~~g~~~~~~~~~--------------~-~~~~~~l~~~gV~v 349 (391)
T 3bwn_A 314 CNYFGKSLESYPAFAWLGTKE--------------E-TDLVSELRRHKVMS 349 (391)
T ss_dssp ETTTTEEECCCCSEEEEEESS--------------S-CCHHHHHHHTTEEC
T ss_pred cccccccCCCcceEEEecCCc--------------H-HHHHHHHHHCCEEE
Confidence 455689999973 1 24455667779986
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=306.93 Aligned_cols=287 Identities=22% Similarity=0.363 Sum_probs=237.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
+.|+|+.|.+++++|+.+.+++.+.+. .+...|+ ..+..++|+++++++.+. .+++++|++|+|+++++..++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~-~~~~~~lr~~la~~~~~~---~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYY-DSPDEELIEKILSYLDTD---FLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCC-CSSCHHHHHHHHHHHTCS---SCCGGGEEEESSHHHHHHHHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCchHHHHHHHHHHcCCC---CCCHHHEEEcCChHHHHHHHHHH
Confidence 579999999988889999999998772 3345674 457999999999998643 35678999999999999999998
Q ss_pred hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
+ ||+|+++ |+|.++...++..|++++.+|++ +++.+|++++ +++++|++++||||||.+++.+++++|+
T Consensus 96 ~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l-----~~~~~v~l~~p~nptG~~~~~~~l~~l~ 164 (335)
T 1uu1_A 96 F---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLT--KDLRIPEVNV-----GEGDVVFIPNPNNPTGHVFEREEIERIL 164 (335)
T ss_dssp S---SEEEECS-SSCHHHHHHHHHHTCEEEECCCC--TTSCCCCCCC-----CTTEEEEEESSCTTTCCCCCHHHHHHHH
T ss_pred h---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccC--CCCCCCHHHc-----CCCCEEEEeCCCCCCCCCCCHHHHHHHH
Confidence 8 8999999 99999999999999999999985 3466888776 5789999999999999999966666555
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG 334 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~ 334 (429)
++ . | ++|+||+|.++.+. ++..+....+++++++||||.+|++|+|+||+++++++++.+...... ++
T Consensus 165 ~~---~-~-~li~De~~~~~~~~-----~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~~ 232 (335)
T 1uu1_A 165 KT---G-A-FVALDEAYYEFHGE-----SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--FN 232 (335)
T ss_dssp HT---T-C-EEEEECTTHHHHCC-----CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSCT--TC
T ss_pred Hh---C-C-EEEEECcchhhcch-----hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcCC--CC
Confidence 54 4 7 89999999986542 222222235789999999999999999999999999999988876544 46
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChH
Q 014172 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSE 414 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 414 (429)
++.++|.++.++|+. .+++++.+++++++++++.+.|+++ |+++. |.+++|+|++++.. +..
T Consensus 233 ~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~------------~~~ 294 (335)
T 1uu1_A 233 VSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFVFMEKE------------EKE 294 (335)
T ss_dssp SCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHH-TCCBC-CCCSSEEEEECCTH------------HHH
T ss_pred cCHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHHHHHHHC-CcEEc-CCCCeEEEEECCCC------------CHH
Confidence 899999999999985 5688899999999999999999988 77765 55667899998742 567
Q ss_pred HHHHHHHHhCCeec
Q 014172 415 SLCRYLLDKAQVLL 428 (429)
Q Consensus 415 ~~~~~Ll~~~gV~v 428 (429)
+++++|+++ ||.+
T Consensus 295 ~~~~~l~~~-gi~v 307 (335)
T 1uu1_A 295 RLLEHLRTK-NVAV 307 (335)
T ss_dssp HHHHHHHHH-TEEE
T ss_pred HHHHHHHHC-CEEE
Confidence 899998875 9876
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=324.48 Aligned_cols=294 Identities=16% Similarity=0.179 Sum_probs=244.6
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHH-cCCCC--CCCCC-C---CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIR-EGFTR--YTPNA-G---TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~-~~~~~--Y~~~~-G---~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
..+|+|+.|+|++++|+.+.+++.+++. .+... |++.. | ..+||++|++++++.++..+++++|++|+|++++
T Consensus 56 ~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~a 135 (427)
T 2hox_A 56 GCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQL 135 (427)
T ss_dssp TCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHH
T ss_pred CceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHH
Confidence 3589999999998888888888887763 33334 98887 8 9999999999999877777789999999999999
Q ss_pred HHHHHHHh--------cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCC
Q 014172 168 ILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSN 239 (429)
Q Consensus 168 l~~~l~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~N 239 (429)
+.+++.++ +++||.|+++.|+|+.|...++..|++++.+ .+|++.|++++++++|+|++++|||
T Consensus 136 l~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~~~~k~v~l~~p~N 207 (427)
T 2hox_A 136 IHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSNPEQYIEMVTSPNN 207 (427)
T ss_dssp HHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSCGGGEEEEEESSCT
T ss_pred HHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeee--------cCCHHHHHHhhcCCceEEEEcCCCC
Confidence 99999999 9999999999999999999999999987643 3688899998888899999999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc-CH
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PK 318 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~ 318 (429)
|||.+++ +. + + ++.+|.|+.|. + .+.++..+. .+++|+++||||.+|++|+|+||+++ ++
T Consensus 208 PtG~~~~-~~-------l--~-~~~~i~d~~~~----~--~~~s~~~~~--~~~~i~~~S~SK~~g~~G~RiG~~~~~~~ 268 (427)
T 2hox_A 208 PEGLLRH-AV-------I--K-GCKSIYDMVYY----W--PHYTPIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDE 268 (427)
T ss_dssp TTCCCCC-CS-------S--T-TCEEEEECTTC----S--TTTSCCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred CcccccH-HH-------H--c-CCCEEEeeccc----C--CCCCccccC--CCceEEEEeChhcCCCCCceEEEEEECCH
Confidence 9999999 52 2 2 45677787764 2 233444443 57899999999999999999999999 58
Q ss_pred HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHHHHHHHHHhccCCCcee-------
Q 014172 319 HFVAACNKIQSQFTSGASSISQKAGVAALGLGY--------AGGEVVSKMVKAFRERRDFLVKSFGELEGVKM------- 383 (429)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~--------~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~------- 383 (429)
++++.+.+.......+++.+.|.++..+|..+. ..++++++.++.|+++++++.+.|++++|+.+
T Consensus 269 ~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~ 348 (427)
T 2hox_A 269 SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSE 348 (427)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCE
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCcccccccccc
Confidence 999999988877777899999999999987521 01456778899999999999999998766554
Q ss_pred -------ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 -------SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 -------~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..|++++|+|++++. +..+++++|++++||.|
T Consensus 349 ~~~~~~~~~p~~g~f~~~~~~~-------------~~~~~~~~ll~~~gI~v 387 (427)
T 2hox_A 349 YCNYFRRMRPPSPSYAWVKCEW-------------EEDKDCYQTFQNGRINT 387 (427)
T ss_dssp EETTTTEEECCCCSEEEEEECS-------------GGGCSHHHHHHHTTEEC
T ss_pred ccccccccCCCCceEEEEECCC-------------cHHHHHHHHHHHCCEEE
Confidence 357789999999973 35678899987789986
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=299.58 Aligned_cols=299 Identities=17% Similarity=0.198 Sum_probs=245.1
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+++|+|+.|++ ++++|+.+.+++.+.+... ...|.+..|..++++++++++.+.+|. +++++|+|+++++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~----~~v~~~~ggt~a~ 116 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK----EAAILFSTGFQSN 116 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHH
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC----CcEEEECCHHHHH
Confidence 3567899999998 6667899999999887652 234556678889999999999988873 5899999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc----CCcEEEEcCCCCCccCC
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSV 244 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPtG~~ 244 (429)
..++++++++||.|+++.|+|..+...++..|++++.+|. +|++++++.+++ ++++|++++|+||||.+
T Consensus 117 ~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~ 189 (398)
T 3a2b_A 117 LGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDI 189 (398)
T ss_dssp HHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCB
T ss_pred HHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCc
Confidence 9999999999999999999999999999999999999986 489999999876 78999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc-eEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER-TLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
++ +++|.++|++| |+++|+||+|..+.|+.. ..++....+..++ +++++||||.++++| ||+++++++++.
T Consensus 190 ~~---~~~l~~~~~~~-~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~~~~~~~~~ 261 (398)
T 3a2b_A 190 VN---LPELTSIANEF-DAAVMVDDAHSLGVIGHK-GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVAGDADVIDF 261 (398)
T ss_dssp CC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGG-GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEECHHHHHH
T ss_pred cC---HHHHHHHHHHc-CcEEEEECCCcccccCCC-CCchHhhcCCCcCCeEEEecccccccCCC---cEEEeCHHHHHH
Confidence 99 89999999999 999999999998776422 1223222122345 699999999999778 999999999998
Q ss_pred HHHH-hhcccCCCchHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC
Q 014172 324 CNKI-QSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (429)
Q Consensus 324 l~~~-~~~~~~~~~~~~q~-aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~ 401 (429)
+... ......+.+.+.|. ++.++|+. .++++++++.++++++++.+.|+++ |+++.+|. ++|+|+.++..
T Consensus 262 l~~~~~~~~~~~~~~~~~~a~~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~-g~~~~~~~~~~-- 333 (398)
T 3a2b_A 262 LKHNARSVMFSASMTPASVASTLKALEI----IQNEPEHIEKLWKNTDYAKAQLLDH-GFDLGATE-SPILPIFIRSN-- 333 (398)
T ss_dssp HHHHCHHHHSSBCCCHHHHHHHHHHHHH----HHHCTHHHHHHHHHHHHHHHHHHHT-TCCBCSCC-SSEEEEECCCH--
T ss_pred HHHhcccceecCCCCHHHHHHHHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHhc-CCCcCCCC-CCEEEEEcCCH--
Confidence 8775 33344445666776 45677775 3456788999999999999999998 88887776 46799998742
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|+++ ||.+
T Consensus 334 ---------~~~~~l~~~l~~~-gi~v 350 (398)
T 3a2b_A 334 ---------EKTFWVTKMLQDD-GVFV 350 (398)
T ss_dssp ---------HHHHHHHHHHHHT-TEEC
T ss_pred ---------HHHHHHHHHHHHC-CcEE
Confidence 2577899999888 9976
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=282.75 Aligned_cols=296 Identities=17% Similarity=0.237 Sum_probs=231.2
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcC-------CCCCCC--CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREG-------FTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~-------~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
+++|+|+.|.++ +.|+.+.+++.+.+... ...|++ ..+..++++++++++. .. ++++|++|+|++
T Consensus 27 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~----~~-~~~~v~~~~g~t 100 (420)
T 1t3i_A 27 HPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFIN----AR-SPREIVYTRNAT 100 (420)
T ss_dssp EECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTT----CS-CGGGEEEESSHH
T ss_pred CceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcC----CC-CCCeEEEcCChH
Confidence 458999999998 67899999999988652 223432 3556778888888764 21 568999999999
Q ss_pred HHHHHHHHHh----cCCCCEEEEcCCCCCC----hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCC
Q 014172 166 QSILQAVLAV----CSPGDEVIIPAPFWVS----YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 237 (429)
Q Consensus 166 ~al~~~l~~l----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p 237 (429)
+++.+++.++ +++||+|+++.|+|++ +...++..|++++.++++ .++.+|++.+++++++++++|++++|
T Consensus 101 ~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~~~v~~~~~ 178 (420)
T 1t3i_A 101 EAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSEKTKLVTVVHI 178 (420)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCTTEEEEEEESB
T ss_pred HHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCCCceEEEEeCC
Confidence 9999999999 8999999999999998 567778899999999986 45678999999999989999999999
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~ 317 (429)
+||||.+++ +++|.++|++| |+++|+|++|..+.. ...+.. .+.++++.||||.+|.+| +||++++
T Consensus 179 ~nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~~~~----~~~~~~----~~~di~~~s~sK~~~~~g--~G~~~~~ 244 (420)
T 1t3i_A 179 SNTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSAPHY----PLDVQL----IDCDWLVASGHKMCAPTG--IGFLYGK 244 (420)
T ss_dssp CTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEEC
T ss_pred cccccCcCC---HHHHHHHHHHc-CCEEEEEhhhccCCc----cCchhh----cCCCEEEEehhhhcCCCc--eEEEEEc
Confidence 999999999 89999999999 999999999986321 112222 246799999999988777 9999999
Q ss_pred HHHHHHHHHHhhc--------------------ccCCCchHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 014172 318 KHFVAACNKIQSQ--------------------FTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (429)
Q Consensus 318 ~~~~~~l~~~~~~--------------------~~~~~~~~~q~aa~~-~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (429)
+++++.+...... +..+.+.+.+.++.. +++.- .+.++++++++++++++++.+.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~ 322 (420)
T 1t3i_A 245 EEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLG 322 (420)
T ss_dssp HHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9988877654321 223466677766554 45430 022467888999999999999999
Q ss_pred cCCCceeecCC------ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 377 ELEGVKMSEPQ------GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 377 ~l~g~~~~~p~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++|+++..|. ++++ ++.++.. +..++++.|. +.||.+
T Consensus 323 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~l~-~~gi~v 366 (420)
T 1t3i_A 323 QIPQLRLYGPNPKHGDRAALA-SFNVAGL------------HASDVATMVD-QDGIAI 366 (420)
T ss_dssp TCTTEEEESCCGGGSCBCSEE-EEEETTB------------CHHHHHHHHH-TTTEEC
T ss_pred hCCCeEEeCCCccccccCCEE-EEEECCC------------CHHHHHHHHH-HCCeEE
Confidence 98899887764 5665 4567642 5778887665 459876
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=278.93 Aligned_cols=280 Identities=16% Similarity=0.162 Sum_probs=216.3
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHH-----cCCCCCCCCCCCH---HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIR-----EGFTRYTPNAGTL---ELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~-----~~~~~Y~~~~G~~---~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
...++.|+|++++|+.+.+++.+.+. .+.+.|+. .|.+ +|+++++++++ .+++++++|+++++
T Consensus 20 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g--------~~~~i~~~~g~~ai 90 (404)
T 1e5e_A 20 DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEK--------TEACVATSSGMGAI 90 (404)
T ss_dssp CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHT--------CSEEEEESSHHHHH
T ss_pred CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhC--------CCcEEEeCChHHHH
Confidence 45789999999998777666665553 23456766 5666 89999998873 13788888889999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCC
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV 244 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~ 244 (429)
..++++++++||+|+++.|+|.++.. .++..|++++.++.+ |++++++.+++++++|++++|+||||.+
T Consensus 91 ~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~t~~v~l~~p~NptG~v 163 (404)
T 1e5e_A 91 AATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKPNTKIVYFETPANPTLKI 163 (404)
T ss_dssp HHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCTTEEEEEEESSCTTTCCC
T ss_pred HHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCCCCcEEEEECCCCCCCcc
Confidence 99999999999999999999999888 788899999999863 7889999999899999999999999999
Q ss_pred CCHHHHHHHHHHHHh-CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee-eEEEcCHHHHH
Q 014172 245 YPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA 322 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~-~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~ 322 (429)
++ +++|+++|++ | |+++|+||+|..+.+. .++ . .++++++.|+||.++++|+|+ ||+++++++++
T Consensus 164 ~~---l~~i~~la~~~~-~~~li~De~~~~~~~~----~~~-~----~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~ 230 (404)
T 1e5e_A 164 ID---MERVCKDAHSQE-GVLVIADNTFCSPMIT----NPV-D----FGVDVVVHSATKYINGHTDVVAGLICGKADLLQ 230 (404)
T ss_dssp CC---HHHHHHHHHTST-TCEEEEECTTTCTTTC----CGG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHH
T ss_pred cC---HHHHHHHHHhhc-CCEEEEECCCchhhhC----Ccc-c----cCCEEEEEcCccccCCCCCCeEEEEEECHHHHH
Confidence 98 9999999999 9 9999999999987653 122 1 367899999999999999998 99999999888
Q ss_pred -HHHHHhhcc-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--------------CCCceeecC
Q 014172 323 -ACNKIQSQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE--------------LEGVKMSEP 386 (429)
Q Consensus 323 -~l~~~~~~~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--------------l~g~~~~~p 386 (429)
.+......+ +.+.+.+.+.++..+++. ....+ +...++.+.+.+.|++ +||+++.++
T Consensus 231 ~~l~~~~~~~~g~~~~~~~~~~~~~~l~~---~~~~~----~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~ 303 (404)
T 1e5e_A 231 QIRMVGIKDITGSVISPHDAWLITRGLST---LNIRM----KAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKK 303 (404)
T ss_dssp HHHHTCCCCCCCCCCCHHHHHHHHHHHTT---HHHHH----HHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHhHhH---HHHHH----HHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHh
Confidence 777766555 566888899988888874 22222 2233333333333332 345555444
Q ss_pred C----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 387 Q----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 387 ~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
+ ++|+.| ++++ ..+.+.+++++.||.
T Consensus 304 ~~~~~g~~~~~-~~~~--------------~~~~~~~~l~~~~i~ 333 (404)
T 1e5e_A 304 QMRMYGSMITF-ILKS--------------GFEGAKKLLDNLKLI 333 (404)
T ss_dssp HCSSCCSEEEE-EETT--------------HHHHHHHHHHTCSSS
T ss_pred hCCCCceEEEE-EeCC--------------CHHHHHHHHHhCCCc
Confidence 4 888777 7752 334556677777763
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=277.27 Aligned_cols=297 Identities=16% Similarity=0.170 Sum_probs=227.0
Q ss_pred CCCeEEcCCCCC-CCCChHHHHHHHHHHHHcCCC-----CC--CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 94 GVSVIRLAAGEP-DFDTPVLIAEAGINAIREGFT-----RY--TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 94 g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~~~~-----~Y--~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
|+++|+|+.|.| ++..++.+.+++.+.+.+... .| +...+..++++++++++ | .++.|++++| +
T Consensus 42 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----~---~~~~i~~~sG-t 113 (399)
T 3tqx_A 42 EKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL----G---TDDTILYSSC-F 113 (399)
T ss_dssp TEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH----T---CSEEEEESCH-H
T ss_pred CeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH----C---CCcEEEECch-H
Confidence 456899999965 334578999999988765211 11 12223466777777765 4 2345555555 7
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCC
Q 014172 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSN 239 (429)
Q Consensus 166 ~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~N 239 (429)
+++..++.+++++||.|+++.|+|..+...++..|++++.++. .|++.+++.+++ ++++|++++|+|
T Consensus 114 ~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~n 186 (399)
T 3tqx_A 114 DANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVFS 186 (399)
T ss_dssp HHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEET
T ss_pred HHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence 7999999999999999999999999999999999999999985 367788888765 799999999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC-CCCceEEEeccChhcccccceeeEEEcCH
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
|||.+++ +++|.++|++| |+++|+||+|+...++... .+.....+ ..+.+++++||||.++ |.+.||+++++
T Consensus 187 ptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~~di~~~s~sK~~~--g~~gG~~~~~~ 259 (399)
T 3tqx_A 187 MDGIIAD---LKSICDLADKY-NALVMVDDSHAVGFIGENG-RGTPEYCGVADRVDILTGTLGKALG--GASGGYTSGHK 259 (399)
T ss_dssp TTTEECC---HHHHHHHHHHT-TCEEEEECTTTTTTSSTTS-CCHHHHHTCTTCCSEEEEESSSSSC--SSCCEEEEECH
T ss_pred CCCCcCC---HHHHHHHHHHc-CCEEEEECCccccccCCCC-CchHHhhCCCCCCcEEEecchHhcc--cCceEEEEcCH
Confidence 9999999 99999999999 9999999999743333222 12222211 1356799999999998 34559999999
Q ss_pred HHHHHHHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEec
Q 014172 319 HFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 319 ~~~~~l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l 396 (429)
++++.+...... +..+.+.+.+.++.++++. ..++.++++++++++++++.+.|+++ |+++.++.+++ +|+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~-~~~~~ 334 (399)
T 3tqx_A 260 EIIEWLRNRSRPYLFSNTVAPVIVATSLKVLEL---LKTEGPQLRKQLQENSRYFRAGMEKL-GFQLVPGNHPI-IPVML 334 (399)
T ss_dssp HHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSE-EEEEE
T ss_pred HHHHHHHHhCcceeccCCCcHHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHc-CCCcCCCCCCE-EEEEe
Confidence 999998875332 2335677777788888875 22668899999999999999999998 88887666655 77888
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+.. .+..+++++|+++ ||.+.
T Consensus 335 ~~~-----------~~~~~~~~~l~~~-gi~v~ 355 (399)
T 3tqx_A 335 GDA-----------QLATNMADHLLQE-GIYVV 355 (399)
T ss_dssp ECH-----------HHHHHHHHHHHHT-TEECC
T ss_pred CCH-----------HHHHHHHHHHHHC-CCEEe
Confidence 643 2578999999886 99863
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-33 Score=274.85 Aligned_cols=296 Identities=16% Similarity=0.232 Sum_probs=230.0
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC---CCC------CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGF---TRY------TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~---~~Y------~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
|+++|+|+.+.++ +.|+.+.+++.+.+.+.. ..| .+..+..++++++++++ |.. ++++|++|+|+
T Consensus 21 g~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~~~-~~~~v~~~~g~ 94 (406)
T 1kmj_A 21 GLPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NAR-SAEELVFVRGT 94 (406)
T ss_dssp TEECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSH
T ss_pred CCceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc----CCC-CCCeEEEeCCh
Confidence 3468999999988 567899999999887532 111 13345667888888776 321 46899999999
Q ss_pred HHHHHHHHHHh----cCCCCEEEEcCCCCCCh----HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 165 KQSILQAVLAV----CSPGDEVIIPAPFWVSY----PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 165 ~~al~~~l~~l----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
++++..++.++ +++||+|+++.|+|++. ...++..|++++.++++. ++.+|++.|++++++++++|++++
T Consensus 95 t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~v~~~~ 172 (406)
T 1kmj_A 95 TEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDEKTRLLAITH 172 (406)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCTTEEEEEEES
T ss_pred hHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhccCCeEEEEeC
Confidence 99999999999 89999999999998764 345778899999999863 466899999999998999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
|+||||.+++ +++|.++|++| |+++|+||+|..+. ....+.. .+.++++.||||.+|++| +||+++
T Consensus 173 ~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~g~----~~~~~~~----~~~d~~~~s~~K~~g~~G--~G~~~~ 238 (406)
T 1kmj_A 173 VSNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAVMH----HPVDVQA----LDCDFYVFSGHKLYGPTG--IGILYV 238 (406)
T ss_dssp BCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTTTT----SCCCHHH----HTCSEEEEEGGGTTSCTT--CEEEEE
T ss_pred CCccccCcCC---HHHHHHHHHHc-CCEEEEEchhhcCC----CCCcccc----cCCCEEEEEchhccCCCC--cEEEEE
Confidence 9999999999 99999999999 99999999998632 1112211 256799999999998778 899999
Q ss_pred CHHHHHHHHHHhh---------------------cccCCCchHHHHHHH-HHHhcCCCCh-HHHHHHHHHHHHHHHHHHH
Q 014172 317 PKHFVAACNKIQS---------------------QFTSGASSISQKAGV-AALGLGYAGG-EVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 317 ~~~~~~~l~~~~~---------------------~~~~~~~~~~q~aa~-~~l~~~~~~~-~~~~~~~~~~~~~r~~l~~ 373 (429)
++++++.+..... .+..+.+.+.+.++. ++++. .. .++++++++++++++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~ 315 (406)
T 1kmj_A 239 KEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEY---VSALGLNNIAEYEQNLMHYALS 315 (406)
T ss_dssp CHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHH
T ss_pred eHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHH---HHHcCHHHHHHHHHHHHHHHHH
Confidence 9998887754331 122345667776655 55553 12 3577888999999999999
Q ss_pred HhccCCCceeecC--CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 374 SFGELEGVKMSEP--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 374 ~L~~l~g~~~~~p--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|++++|+++..+ .++++.| .+++. +..++++.|.++ ||.+
T Consensus 316 ~L~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~l~~~-gi~v 358 (406)
T 1kmj_A 316 QLESVPDLTLYGPQNRLGVIAF-NLGKH------------HAYDVGSFLDNY-GIAV 358 (406)
T ss_dssp HHTTSTTEEEESCTTCCSEEEE-EETTC------------CHHHHHHHHHHT-TEEC
T ss_pred HHhcCCCeEEecCCCcCCEEEE-EECCC------------CHHHHHHHHhhC-CcEE
Confidence 9999889998887 7887665 56532 677888776554 9875
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=272.17 Aligned_cols=296 Identities=12% Similarity=0.096 Sum_probs=229.1
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHc-CC----CCC--CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-GF----TRY--TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~-~~----~~Y--~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+.+|+|+.|.+ ++++|+.+.+++.+.+.+ +. ..| +...+..++|+++++++ |. ++.+++++|
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~---~~~i~~~sG- 108 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----GY---SRALLFISG- 108 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----TC---SEEEEESCH-
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh----CC---CcEEEeCCc-
Confidence 3567999999985 556788999999998865 21 223 34456678888888887 42 245555555
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC---CcEEEEcCCCCCc
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK---SRLLILCSPSNPT 241 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~---~~~i~l~~p~NPt 241 (429)
++++..++++++++||.|+++.|+|..+...++..|++++.+|. .|++++++.+++. ++++++++|||||
T Consensus 109 t~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~npt 181 (384)
T 1bs0_A 109 FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVFSMD 181 (384)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred HHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 89999999999999999999999999999999999999999984 4899999988653 6788899999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHH
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~ 321 (429)
|.+++ +++|.++|++| |++||+||+|..+.++.........+. .+.+++++||||.++++| ||++++++++
T Consensus 182 G~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~~~--~~~di~~~s~sK~~~~~G---G~~~~~~~~~ 252 (384)
T 1bs0_A 182 GDSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSCWLQK--VKPELLVVTFGKGFGVSG---AAVLCSSTVA 252 (384)
T ss_dssp CCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHHHHTT--CCCSEEEEESSSTTSSCC---EEEEECHHHH
T ss_pred CCccC---HHHHHHHHHHc-CcEEEEECCcccceecCCCCchHHhcC--CCCcEEEeeccchhhccC---cEEEeCHHHH
Confidence 99999 89999999999 999999999987655311111111122 134499999999999777 9999999999
Q ss_pred HHHHHHhhcc--cCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCC
Q 014172 322 AACNKIQSQF--TSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398 (429)
Q Consensus 322 ~~l~~~~~~~--~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~ 398 (429)
+.+......+ +.+++.+.+.++.++++. ..+ +.++.+++++++++++.+.|+++ |+++.+ .++.++|++++.
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~ 327 (384)
T 1bs0_A 253 DYLLQFARHLIYSTSMPPAQAQALRASLAV---IRSDEGDARREKLAALITRFRAGVQDL-PFTLAD-SCSAIQPLIVGD 327 (384)
T ss_dssp HHHHHHCHHHHSSBCCCHHHHHHHHHHHHH---HHSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECS-CCSSBCCEEEES
T ss_pred HHHHHhchhhhcCCCCCHHHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhc-CCcccC-CCCCEEEEEeCC
Confidence 8887653222 335788888888888875 222 67889999999999999999998 888764 445557888864
Q ss_pred ccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 399 YYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
. .+..+++++|+++ ||.+.
T Consensus 328 ~-----------~~~~~l~~~l~~~-gi~v~ 346 (384)
T 1bs0_A 328 N-----------SRALQLAEKLRQQ-GCWVT 346 (384)
T ss_dssp H-----------HHHHHHHHHHHHT-TEECC
T ss_pred H-----------HHHHHHHHHHHHC-CcEEE
Confidence 2 2577899999877 99863
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-33 Score=274.33 Aligned_cols=287 Identities=15% Similarity=0.155 Sum_probs=232.0
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv 184 (429)
+.++|+.+.+++.+.+.. .|++ ...++++++++++.+.+|. +++ +|++|+|+++++..++.+++++||+|++
T Consensus 42 ~~~~~~~v~~a~~~~~~~---~~~~--~~~~~~~~~~~~la~~~g~--~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~ 114 (393)
T 1vjo_A 42 PSNAHPSVLQAMNVSPVG---HLDP--AFLALMDEIQSLLRYVWQT--ENPLTIAVSGTGTAAMEATIANAVEPGDVVLI 114 (393)
T ss_dssp CCCCCHHHHHHHSSCCCC---TTSH--HHHHHHHHHHHHHHHHHTC--CCSCEEEESSCHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCCCHHHHHHHhccccc---ccCH--HHHHHHHHHHHHHHHHhCC--CCCcEEEEeCchHHHHHHHHHhccCCCCEEEE
Confidence 345678888887765422 4643 2568999999999998885 567 8999999999999999999999999999
Q ss_pred cCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 185 PAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 185 ~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
++|+|.+ +...++..|++++.++++. ++.+|++.|++.+++ ++++|++++|+||||.+++ +++|.++|++|
T Consensus 115 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~- 188 (393)
T 1vjo_A 115 GVAGYFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF- 188 (393)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-
T ss_pred EcCChhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhCCceEEEEeccCCCcceecc---HHHHHHHHHHc-
Confidence 9999999 8999999999999999864 456899999999988 8999999999999999999 88999999999
Q ss_pred CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHH----h---------
Q 014172 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI----Q--------- 328 (429)
Q Consensus 262 ~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~----~--------- 328 (429)
|+++|+||+|.. +..+.. +. ..+.++++.|+||.++.+| |+||+++++++++.+... .
T Consensus 189 ~~~li~Dea~~~----g~~~~~---~~-~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (393)
T 1vjo_A 189 GTLLLVDTVTSL----GGVPIF---LD-AWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLL 259 (393)
T ss_dssp TCEEEEECTTTT----TTSCCC---TT-TTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred CCEEEEECCccc----cCcCCc---cc-ccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhh
Confidence 999999999983 222222 22 2466799999999998677 999999999988877532 0
Q ss_pred ------hcccC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc---eEEEEEecCC
Q 014172 329 ------SQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFIDFST 398 (429)
Q Consensus 329 ------~~~~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~---~~~~~~~l~~ 398 (429)
..... +++.+.|.++.++++.. .++++++++++++++++++.+.|+++ |+++..|++ +.++++.++.
T Consensus 260 ~~~~~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~ 336 (393)
T 1vjo_A 260 GKYWGSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPD 336 (393)
T ss_dssp HHHHSTTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCT
T ss_pred hhhhccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHc-CCcccCCccccCCcEEEEEcCC
Confidence 01223 67888899888888751 12357889999999999999999998 888877765 3457788763
Q ss_pred ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 399 YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. .+..+++++|++++||.+
T Consensus 337 ~-----------~~~~~~~~~l~~~~gi~v 355 (393)
T 1vjo_A 337 G-----------VDGKAVARRLLNEHNIEV 355 (393)
T ss_dssp T-----------CCHHHHHHHHHHHHCEEC
T ss_pred C-----------CCHHHHHHHHHhhCCEEE
Confidence 2 268899999988778876
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=269.54 Aligned_cols=293 Identities=15% Similarity=0.159 Sum_probs=233.0
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 177 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 177 (429)
+.|....+. ..|+.+.+++.+.+. ..|++. ..++++++++++.+.+|.+ ++++|++|+|+++++..++.++++
T Consensus 21 ~~l~~~~~~-~~~~~v~~a~~~~~~---~~~~~~--~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~a~~~~~~~l~~ 93 (386)
T 2dr1_A 21 YKLFTAGPV-ACFPEVLEIMKVQMF---SHRSKE--YRKVHMDTVERLREFLEVE-KGEVLLVPSSGTGIMEASIRNGVS 93 (386)
T ss_dssp SEECCSSSC-CCCHHHHHHTTSCCC---CTTSHH--HHHHHHHHHHHHHHHHTCS-SSEEEEESSCHHHHHHHHHHHHSC
T ss_pred ceeecCCCc-CCcHHHHHHHhcccc---cccCHH--HHHHHHHHHHHHHHHhCCC-CCcEEEEeCChHHHHHHHHHHhhc
Confidence 334433333 446778777665432 256432 3789999999999988965 467899999999999999999999
Q ss_pred CCCEEEEcCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc--ccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 178 PGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 178 ~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l--~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+||+|++++|+|.+ +...++..|++++.++.+. ++.+|+++|++++ .+++++|++++|+||||.+.+ +++|
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~i 168 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNP---LPEL 168 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHH
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCC---HHHH
Confidence 99999999999998 8889999999999999864 4668999999999 568999999999999999998 8999
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH--------
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-------- 325 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~-------- 325 (429)
.++|++| |+++|+||+|..+.+. .++ . ..+.++++.||||.++.++ ++||+++++++++.+.
T Consensus 169 ~~l~~~~-~~~li~D~a~~~~~~~----~~~---~-~~~~di~~~s~sK~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~ 238 (386)
T 2dr1_A 169 AKVAKEH-DKLVFVDAVSAMGGAD----IKF---D-KWGLDVVFSSSQKAFGVPP-GLAIGAFSERFLEIAEKMPERGWY 238 (386)
T ss_dssp HHHHHHT-TCEEEEECTTTBTTBC----CCT---T-TTTCSEEEEETTSTTCCCS-SCEEEEECHHHHHHHTTCTTCCST
T ss_pred HHHHHHc-CCeEEEEccccccCcc----ccc---c-ccCCcEEEEeccccccCCC-ceEEEEECHHHHHHHhcCCCCceE
Confidence 9999999 9999999999975431 122 1 1356799999999998552 4999999999887762
Q ss_pred --------HH--hhcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCceeecCC---ceE
Q 014172 326 --------KI--QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---GAF 390 (429)
Q Consensus 326 --------~~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~---~~~ 390 (429)
.. ......+++.+.|.++.++|+. ..+ ++++++++++++++++.+.|+++ |+++..++ .++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 314 (386)
T 2dr1_A 239 FDIPLYVKYLKEKESTPSTPPMPQVFGINVALRI---IEKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPT 314 (386)
T ss_dssp TCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSS
T ss_pred EeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCc
Confidence 22 1234456788889888888875 233 37788999999999999999998 88887765 366
Q ss_pred EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|++++.. .+..+++++|+++ ||.+
T Consensus 315 ~~~~~~~~~-----------~~~~~~~~~l~~~-gi~v 340 (386)
T 2dr1_A 315 ITAVLTPPG-----------IKGDEVYEAMRKR-GFEL 340 (386)
T ss_dssp EEEEECCTT-----------CCHHHHHHHHHHT-TEEC
T ss_pred eEEEEcCCC-----------CCHHHHHHHHHHC-CeEE
Confidence 789988742 2688999999888 9876
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=274.93 Aligned_cols=299 Identities=18% Similarity=0.140 Sum_probs=228.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC----C---CCCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----T---RYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~----~---~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
+.|+|+.|.+. +.|+.+.+++.+.+.... . .|.. ..+..++++++++++ | +++++|++|+|++++
T Consensus 16 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 88 (390)
T 1elu_A 16 NKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF----N--VDPNTITITDNVTTG 88 (390)
T ss_dssp TSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT----T--SCGGGEEEESSHHHH
T ss_pred CeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc----C--CCHHHEEEeCChHHH
Confidence 47999988744 457889999988875421 1 3422 256678888888886 3 466799999999999
Q ss_pred HHHHHHHh-cCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 168 ILQAVLAV-CSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 168 l~~~l~~l-~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
+..+++++ +++||+|+++.|+|.++... ++..|++++.++++.++++.+|++.|++.+++++++|++++|+||||
T Consensus 89 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 89 CDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTG 168 (390)
T ss_dssp HHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTC
T ss_pred HHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccccCCc
Confidence 99999999 89999999999999997754 56789999999986545677999999999998999999999999999
Q ss_pred CCCCHHHHHHHHHHHH----hCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 243 SVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~----~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
.+++ +++|.++|+ +| |+++|+||+|... ..... +. ..+.++++.|+||.+. +|.++||+++++
T Consensus 169 ~~~~---~~~i~~l~~~~~~~~-~~~li~Dea~~~g----~~~~~---~~-~~~~d~~~~s~~K~~~-~~~g~G~~~~~~ 235 (390)
T 1elu_A 169 QVLP---LAEIMAVCRRHQGNY-PVRVLVDGAQSAG----SLPLD---FS-RLEVDYYAFTGHKWFA-GPAGVGGLYIHG 235 (390)
T ss_dssp CBCC---HHHHHHHHHHCCSSS-CCEEEEECTTTBT----TBCCC---TT-TSCCSEEEEESSSTTC-CCTTCEEEEECT
T ss_pred eecC---HHHHHHHHhhhhhhc-CcEEEEEcccccC----CcCCC---hh-hcCCCEEEcccccccc-CCCceEEEEECH
Confidence 9999 899999999 99 9999999999852 21111 11 1356799999999543 667799999998
Q ss_pred HHHHHHHHHh----------------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 014172 319 HFVAACNKIQ----------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (429)
Q Consensus 319 ~~~~~l~~~~----------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (429)
++++.+.... .....+++...+.++.++++.-. ...++++++++++++++++.+.|+
T Consensus 236 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~ 314 (390)
T 1elu_A 236 DCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ-RQGTAEERYQAICQRSEFLWRGLN 314 (390)
T ss_dssp TTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8877654321 11223456666776666665300 022478899999999999999999
Q ss_pred cCCCceeec---CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 377 ELEGVKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 377 ~l~g~~~~~---p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++|+++.. +.++|+.| +++.. .+..+++++|.++ ||.+
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~l~~~-gi~v 356 (390)
T 1elu_A 315 QLPHVHCLATSAPQAGLVSF-TVDSP-----------LGHRAIVQKLEEQ-RIYL 356 (390)
T ss_dssp HSTTEEESCSSCCSSSEEEE-EECSS-----------SCHHHHHHHHHHT-TEEC
T ss_pred hcCCcEEecCccccccEEEE-EcCCC-----------CCHHHHHHHHHHC-CEEE
Confidence 988888874 46777555 77532 2678899998655 9876
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=269.75 Aligned_cols=291 Identities=17% Similarity=0.169 Sum_probs=225.3
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCC--------CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTR--------YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~--------Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
+.|+.+.+. ++|+.+.+++.+.+.+.... |.+..+..++++++++++ | +++++|++|+|+++++.
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a~~ 75 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATESIN 75 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCeEEEECCHHHHHH
Confidence 677777766 66889999999988752111 112234567888888876 3 46789999999999999
Q ss_pred HHHHHhc----CCCCEEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 170 QAVLAVC----SPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 170 ~~l~~l~----~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
.++++++ ++||+|+++.|+|+++...+ +..|++++.+|++. ++.+|+++|++++++++++|++++|+||||
T Consensus 76 ~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 153 (384)
T 1eg5_A 76 WILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNEVG 153 (384)
T ss_dssp HHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTTTC
T ss_pred HHHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCCCCeEEEEECCCCCcc
Confidence 9999998 79999999999999887655 77899999999863 467899999999998999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCC--eEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPR--LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~--i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~ 320 (429)
.+++ +++|.++|++| | ++||+||+|.. +. ....+ .. .+.++++.|+||.+|++| +||+++++++
T Consensus 154 ~~~~---~~~i~~l~~~~-~~~~~li~Dea~~~---~~-~~~~~---~~-~~~di~~~s~sK~~g~~G--~G~~~~~~~~ 219 (384)
T 1eg5_A 154 TIQP---VEDVTRIVKKK-NKETLVHVDAVQTI---GK-IPFSL---EK-LEVDYASFSAHKFHGPKG--VGITYIRKGV 219 (384)
T ss_dssp BBCC---HHHHHHHHHHH-CTTCEEEEECTTTT---TT-SCCCC---TT-TCCSEEEEEGGGGTSCTT--CEEEEECTTS
T ss_pred cccC---HHHHHHHHHhc-CCceEEEEEhhhhc---CC-cccCc---hh-cCCCEEEecHHHhcCCCc--eEEEEEcCCC
Confidence 9999 88999999999 9 99999999983 22 12222 22 256799999999999878 7999998875
Q ss_pred --HHHHHHH---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC-c--eEEE
Q 014172 321 --VAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-G--AFYL 392 (429)
Q Consensus 321 --~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~-~--~~~~ 392 (429)
...+... ......+++.+.+.++.++|+. ..+++++++++++++++++.+.|++ +|+++..+. + +.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~~ 295 (384)
T 1eg5_A 220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHMEKLRSKLVSGLMN-LGAHIITPLEISLPNTL 295 (384)
T ss_dssp CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHT-TTCEECSCTTSBCTTEE
T ss_pred ccccccccCcccccccCCCCChHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHhCC-CCeEEeCCcccCCCCEE
Confidence 2222111 1123446788899888888875 3567888999999999999999998 488886553 2 2346
Q ss_pred EEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+++. +..+++++|.+ +||.+
T Consensus 296 ~~~~~~~------------~~~~~~~~l~~-~gi~v 318 (384)
T 1eg5_A 296 SVSFPNI------------RGSTLQNLLSG-YGIYV 318 (384)
T ss_dssp EEECTTC------------CHHHHHHHHHH-TTEEC
T ss_pred EEEeCCC------------CHHHHHHHHhh-CCeEE
Confidence 6776632 67889988864 59876
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=275.07 Aligned_cols=290 Identities=12% Similarity=0.100 Sum_probs=221.5
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCCCCHHHHHH-HHHHHHhhcCCCCCCCcEEEecC
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSA-ICHKLKEENGLSYTPDQILVSNG 163 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~---------~~~Y~~~~G~~~lr~~-ia~~l~~~~g~~~~~~~i~~t~G 163 (429)
++++|+|+.|.+..++|+.+.+++.+.+... ...|.+..+..+++++ +++++. . + +|++|+|
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~----~--~--~v~~~~g 77 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLG----C--D--VARVTNG 77 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTT----S--S--EEEEESS
T ss_pred CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcC----C--C--EEEEeCC
Confidence 3468999998877778899999999877542 1234567788999999 999863 2 2 9999999
Q ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEec--CCCCCCCCCCHHHHHhhcc-----cCCcEEEEcC
Q 014172 164 AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP--TRISENFLLDPKVLESKLT-----EKSRLLILCS 236 (429)
Q Consensus 164 ~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~e~l~~~l~-----~~~~~i~l~~ 236 (429)
+++++..++++++++||+|++++|+|.++...++..|++++.++ .+ .++.+|+++|+++++ +++++|++++
T Consensus 78 ~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 78 AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDY--PDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCT--TTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hHHHHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccC--CCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999 64 346799999999997 7899999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
|+||||.+++ +++|.++|++| |++||+||+|..+.+. .++..+ +..+++.||||.++ .|.|+||+++
T Consensus 156 ~~nptG~~~~---~~~i~~~~~~~-~~~li~D~a~~~~~~~----~~~~~~----~~di~~~s~sK~~~-~~~~~G~~~~ 222 (371)
T 2e7j_A 156 PDGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIGRMP----VSLKEI----GADFIVGSGHKSMA-ASGPIGVMGM 222 (371)
T ss_dssp SCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBTTBC----CCHHHH----TCSEEEEEHHHHSS-CCSSCEEEEE
T ss_pred CCCCCcccCC---HHHHHHHHHHc-CCeEEEECccccCCCC----CChhhc----CCCEEEecCCcCCC-CCCCcEEEEE
Confidence 9999999999 79999999999 9999999999975431 122222 34599999999998 4569999999
Q ss_pred CHHHHHH-HHHHhh--cc-----cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH--HHHHHHHHHHhccCCCceeecC
Q 014172 317 PKHFVAA-CNKIQS--QF-----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAF--RERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 317 ~~~~~~~-l~~~~~--~~-----~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~--~~~r~~l~~~L~~l~g~~~~~p 386 (429)
++++++. +..... .. ..+++...+.++.++++. ..+ +..+++ +++++++.+.|+++ |+++..|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~---~~~---~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~ 295 (371)
T 2e7j_A 223 KEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRE---RIKRWDEEVEKARRFAAEMEKL-GIKQLGD 295 (371)
T ss_dssp CTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHH---HGGGHHHHHHHHHHHHHHHHHT-TCEEESS
T ss_pred echhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHc-CcEEecC
Confidence 9988776 654432 11 233455555555566653 121 566777 88999999999988 8888766
Q ss_pred C--ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 Q--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. .+.++|++++ +..+++++|. ++||.+
T Consensus 296 ~~~~~~~~~~~~~--------------~~~~~~~~l~-~~gi~~ 324 (371)
T 2e7j_A 296 NPHNHDLMFFHAE--------------VLYEISKKAK-GGRFFL 324 (371)
T ss_dssp SSCCSSEEEEECH--------------HHHHHHHHSS-SGGGHH
T ss_pred CCccCceEEEECC--------------CHHHHHHHHH-HCCEEE
Confidence 3 3446888885 2567888877 448764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=272.01 Aligned_cols=296 Identities=18% Similarity=0.198 Sum_probs=227.0
Q ss_pred cCCCeEEcCCCCC-CCCChHHHHHHHHHHHHc-C--CCCCCCCCCC----HHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-G--FTRYTPNAGT----LELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~-~--~~~Y~~~~G~----~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+++|+|+.|++ ++..++.+.+++.+.+.. + ...|....|. .+|++++++++ |. +++++++++
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~----g~----~~~i~~~sG 133 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY----GT----TGAIVFSTG 133 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH----TC----SEEEEESCH
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh----CC----CceEEecCc
Confidence 4567999999985 545688999999998865 3 2233344455 45555555554 52 255666666
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc----CCcEEEEcCCCCC
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE----KSRLLILCSPSNP 240 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NP 240 (429)
++++..++.+++++||.|+++.|+|.++...++..|++++.++. .|++.|++.+++ ++++|++++++||
T Consensus 134 s~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~~n~ 206 (427)
T 2w8t_A 134 YMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGVYSM 206 (427)
T ss_dssp HHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESEETT
T ss_pred HHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence 77888899999999999999999999999999999999998873 489999998875 7899999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc-CCCCCCceEEEeccChhcccccceeeEEEcCHH
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS-LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~-~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~ 319 (429)
||.+++ +++|.++|++| |+++|+||+|..+.++.... .+.. +.-..+.++++.||||.+|++| ||++++++
T Consensus 207 tG~~~~---l~~l~~l~~~~-g~~li~Dea~~~~~~~~~g~-~~~~~~~~~~~~di~~~s~sK~~g~~g---G~v~~~~~ 278 (427)
T 2w8t_A 207 LGDIAP---LKEMVAVAKKH-GAMVLVDEAHSMGFFGPNGR-GVYEAQGLEGQIDFVVGTFSKSVGTVG---GFVVSNHP 278 (427)
T ss_dssp TTEECC---HHHHHHHHHHT-TCEEEEECTTTTTTSSTTSC-CHHHHTTCTTCCSEEEEESSSTTCSCC---EEEEECCT
T ss_pred CCCccC---HHHHHHHHHHc-CCEEEEECCccccccCCCCC-chHhhcCCCcCCcEEEecchhhhccCC---CEEEeCHH
Confidence 999999 99999999999 99999999999987753222 2222 2212356899999999999777 99999998
Q ss_pred HHHHHHHHhh--cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCCceEEEEEec
Q 014172 320 FVAACNKIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 396 (429)
Q Consensus 320 ~~~~l~~~~~--~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~~~~~~~~l 396 (429)
+++.+..... .++.+.+...+.++.++|+. .+++++++++++++++++.+.|+++ |+++. ++..+.++|+.+
T Consensus 279 l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 353 (427)
T 2w8t_A 279 KFEAVRLACRPYIFTASLPPSVVATATTSIRK----LMTAHEKRERLWSNARALHGGLKAM-GFRLGTETCDSAIVAVML 353 (427)
T ss_dssp TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHH----HTSCHHHHHHHHHHHHHHHHHHHHH-TCEESCSSCCSSEEEEEE
T ss_pred HHHHHHHhcccccccCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCcccCCCCCCCEEEEEE
Confidence 8887765422 23345666666666677775 2235678899999999999999988 88887 451445688988
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.. .+..+++++|+++ ||.+
T Consensus 354 ~~~-----------~~~~~l~~~L~~~-Gi~v 373 (427)
T 2w8t_A 354 EDQ-----------EQAAMMWQALLDG-GLYV 373 (427)
T ss_dssp SSH-----------HHHHHHHHHHHHT-TEEC
T ss_pred CCH-----------HHHHHHHHHHHHC-CeEE
Confidence 742 2477899999887 9976
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=272.66 Aligned_cols=298 Identities=15% Similarity=0.149 Sum_probs=227.2
Q ss_pred CCCeEEcCCCCC-CCCChHHHHHHHHHHHHc-CC------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 94 GVSVIRLAAGEP-DFDTPVLIAEAGINAIRE-GF------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 94 g~~~i~L~~g~~-~~~~p~~v~~a~~~~~~~-~~------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
|++++++..|++ +++.++.+.+++.+.+.+ +. ..|+...+..++|+++++++. .+++|++|+|++
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-------~~~~i~~~sG~~ 117 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ-------KEAALVFSSAYN 117 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT-------CSEEEEESCHHH
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhC-------CCcEEEECCcHH
Confidence 456789988775 565667899999998865 21 234444567889999988863 257888888877
Q ss_pred HHHHHHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc----cCCcEEEEcCCCC
Q 014172 166 QSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT----EKSRLLILCSPSN 239 (429)
Q Consensus 166 ~al~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~----~~~~~i~l~~p~N 239 (429)
++..++..++ .+||.|+++.|+|+++...++..|++++.++.+ |++.+++.++ +++++|++++|+|
T Consensus 118 -a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~~~~~n 189 (401)
T 2bwn_A 118 -ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYS 189 (401)
T ss_dssp -HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCT
T ss_pred -HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEEecCcC
Confidence 6666666553 589999999999999999999999999999863 6888888776 5789999999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH 319 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~ 319 (429)
|||.+++ +++|.++|++| |+++|+||+|....|+...........-....+++++||||.++++| ||++++++
T Consensus 190 ptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G---G~~~~~~~ 262 (401)
T 2bwn_A 190 MDGDFGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASAR 262 (401)
T ss_dssp TTCCBCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHH
T ss_pred CCCCcCC---HHHHHHHHHHc-CCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC---CEEecCHH
Confidence 9999999 89999999999 99999999999665643222111111111234689999999999888 99999999
Q ss_pred HHHHHHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecC
Q 014172 320 FVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (429)
Q Consensus 320 ~~~~l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~ 397 (429)
+++.+...... +..+.+.+.+.++.++++.. ....+++++++++++++++.+.|+++ |+++..+.++ ++|+.++
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~-~~~~~~~ 338 (401)
T 2bwn_A 263 MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFL--KTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSH-IVPVVIG 338 (401)
T ss_dssp HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSS-CEEEECC
T ss_pred HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCC-eEEEEeC
Confidence 98887754322 23334557787777777641 12235788899999999999999988 8888877777 5888886
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.. .+..+++++|++++||.+
T Consensus 339 ~~-----------~~~~~~~~~L~~~~gi~v 358 (401)
T 2bwn_A 339 DP-----------VHTKAVSDMLLSDYGVYV 358 (401)
T ss_dssp CH-----------HHHHHHHHHHHHHHCEEC
T ss_pred Ch-----------HHHHHHHHHHHhcCCEEE
Confidence 42 156789999986669986
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=268.28 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=228.0
Q ss_pred cCCCeEEcCCCCCCCC--ChHHHHHHHHHHHHc-CCC----CCC--CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecC
Q 014172 93 AGVSVIRLAAGEPDFD--TPVLIAEAGINAIRE-GFT----RYT--PNAGTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~--~p~~v~~a~~~~~~~-~~~----~Y~--~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G 163 (429)
.|+++|+|+.|.| ++ +|+.+.+++.+.+.. +.. .|. ...+..++++++++++ |. + +.|++++|
T Consensus 43 ~g~~~id~~~~~~-~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~--~-~~i~~~sG 114 (401)
T 1fc4_A 43 DGSHVINFCANNY-LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----GM--E-DAILYSSC 114 (401)
T ss_dssp TSCEEEECCCSCT-TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----TC--S-EEEEESCH
T ss_pred CCccEEEeeccCc-ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh----CC--C-cEEEeCCh
Confidence 4678999999965 54 478999999988765 211 221 1345678888888887 42 3 55655555
Q ss_pred hHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCC
Q 014172 164 AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSP 237 (429)
Q Consensus 164 ~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p 237 (429)
++++..++++++++||.|+++.|+|..+...++..|++++.++. .|++++++.+++ ++++|++++|
T Consensus 115 -s~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 186 (401)
T 1fc4_A 115 -FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVLIATDGV 186 (401)
T ss_dssp -HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEEEEEESE
T ss_pred -HHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 66888899999999999999999999988899999999999873 488999988865 7899999999
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCc-cccc-CCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEE
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIY-APATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYI 314 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~-~~~~-~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v 314 (429)
+||||.+++ +++|.++|++| |+++|+||+|+ ++.+ .+....+...+. .+.+++++||||.+ +++| ||+
T Consensus 187 ~nptG~~~~---~~~i~~l~~~~-~~~li~De~~~~g~~~~~g~~~~~~~~~~--~~~di~~~s~sK~~~~~~g---G~~ 257 (401)
T 1fc4_A 187 FSMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVM--GRVDIITGTLGKALGGASG---GYT 257 (401)
T ss_dssp ETTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCT--TCCSEEEEESSSTTCSSSC---EEE
T ss_pred cCCCCCCCC---HHHHHHHHHHc-CCEEEEECcccccccCCCCCccHHHcCCC--cCCcEEEecchhhccCCCC---EEE
Confidence 999999999 99999999999 99999999996 6653 332222222222 25679999999999 6554 999
Q ss_pred EcCHHHHHHHHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEE
Q 014172 315 AGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL 392 (429)
Q Consensus 315 ~~~~~~~~~l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~ 392 (429)
++++++++.+...... ++.+.+.+.+.++.++|+. .+..++.+++++++++++.+.|+++ |+++. +..++|+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~ 331 (401)
T 1fc4_A 258 AARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAA-GFTLA-GADHAII 331 (401)
T ss_dssp EECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBC-CSSSSEE
T ss_pred EcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCCCEE
Confidence 9999999988775422 2557889999999888875 2224678889999999999999998 88877 5566678
Q ss_pred EEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|++++.. .+..+++++|+++ ||.+
T Consensus 332 ~~~~~~~-----------~~~~~l~~~l~~~-gi~v 355 (401)
T 1fc4_A 332 PVMLGDA-----------VVAQKFARELQKE-GIYV 355 (401)
T ss_dssp EEEEECH-----------HHHHHHHHHHHHT-TEEC
T ss_pred EEEcCCh-----------HHHHHHHHHHHHC-CcEE
Confidence 9998642 1577899998876 9976
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.08 Aligned_cols=286 Identities=18% Similarity=0.249 Sum_probs=219.1
Q ss_pred CCCCCCCC-h---HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-c
Q 014172 102 AGEPDFDT-P---VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-C 176 (429)
Q Consensus 102 ~g~~~~~~-p---~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~ 176 (429)
.++|+|++ | +++.+++.+.+.++...|.+..+..++|++++++++ .++.|++++| ++++.+++.++ +
T Consensus 4 ~~~p~f~~~p~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~-------~~~~i~~~sG-t~al~~~l~~l~~ 75 (388)
T 1b9h_A 4 RKAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG-------AAHALAVTNG-THALELALQVMGV 75 (388)
T ss_dssp -CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT-------CSEEEEESCH-HHHHHHHHHHTTC
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC-------CCeEEEeCCH-HHHHHHHHHHcCC
Confidence 45788887 7 899999999988754567777788999999999974 2256777766 89999999999 8
Q ss_pred CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHH
Q 014172 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~ 256 (429)
++||+|+++.|+|.++...++..|++++.++++++ ++.+|++.|++++++++++|+ |+||||.+.+ +++|.++
T Consensus 76 ~~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i~~l 148 (388)
T 1b9h_A 76 GPGTEVIVPAFTFISSSQAAQRLGAVTVPVDVDAA-TYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKI 148 (388)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHH
T ss_pred CCcCEEEECCCccHHHHHHHHHcCCEEEEEecCCC-cCCCCHHHHHHhcCcCceEEE---EeCCccCcCC---HHHHHHH
Confidence 99999999999999999999999999999998753 477999999999988888776 9999999998 8999999
Q ss_pred HHhCCCeEEEEccCCccc-ccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH-H--HHHHHHHhhc--
Q 014172 257 VAKHPRLLVLSDEIYEHI-IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-F--VAACNKIQSQ-- 330 (429)
Q Consensus 257 a~~~~~i~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-~--~~~l~~~~~~-- 330 (429)
|++| |++||+|++|..+ .+.+. .+..+ + ++.+.||||..+++|.|+||++++++ + ++.+......
T Consensus 149 a~~~-~~~li~D~a~~~g~~~~~~---~~~~~----~-~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T 1b9h_A 149 SADT-GVPLLQDAAHAHGARWQGK---RVGEL----D-SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGR 219 (388)
T ss_dssp HHHH-TCCBCEECTTCTTCEETTE---EGGGS----S-SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTC
T ss_pred HHHc-CCEEEEecchhcCCccCCe---ecccc----c-ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 9999 9999999999863 33321 12222 1 58899999877777889999998876 5 5555443221
Q ss_pred -------------ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec------CCceEE
Q 014172 331 -------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE------PQGAFY 391 (429)
Q Consensus 331 -------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~------p~~~~~ 391 (429)
.+...+.+...++... .+++++..++++++++++.+.|++++|+++.. +.++++
T Consensus 220 ~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
T 1b9h_A 220 PRDDRRYFHKIAGSNMRLNEFSASVLRAQ-------LARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYM 292 (388)
T ss_dssp CTTCSSCCCCSCCCBCBCBHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSE
T ss_pred CccCccceeecccccCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEE
Confidence 0011233322222222 34466788888999999999999988888765 456788
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+.++...+ .+..++.++|.++ ||.+
T Consensus 293 ~~~~~~~~~~---------~~~~~l~~~L~~~-gI~v 319 (388)
T 1b9h_A 293 AMFRIPGLTE---------ERRNALVDRLVEA-GLPA 319 (388)
T ss_dssp EEEECTTCCH---------HHHHHHHHHHHHT-TCCE
T ss_pred EEEEeCCcCc---------ccHHHHHHHHHHC-CCCc
Confidence 9999974200 1467899988865 8876
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=275.26 Aligned_cols=326 Identities=12% Similarity=0.137 Sum_probs=230.1
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC--CC-------CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHH
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP--DF-------DTPVLIAEAGINAIREGFTRYTPNAGTLELRS 139 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~--~~-------~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~ 139 (429)
..|++.++++.+..+..+++.+...|.++++|..|++ ++ +.++.+.+++. .+...|++..+..+|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~~~~~y~~~~~~~~l~~ 82 (456)
T 2ez2_A 7 PFRIKSVETVSMIPRDERLKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----MGDEAYAGSENFYHLER 82 (456)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHTTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----TCCCCSSSCHHHHHHHH
T ss_pred CeeeeeecccCCCCHHHHHHHHHHCCCCcccCCcccceeeeccccCCccCCHHHHHHhh----cchhhcccChhHHHHHH
Confidence 3567777777766666677777777777777777765 44 22355555443 44557888888899999
Q ss_pred HHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCC-CChHHHHHHcCCEEEEecCCCC----C--
Q 014172 140 AICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFW-VSYPEMARIADATPVILPTRIS----E-- 212 (429)
Q Consensus 140 ~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~----~-- 212 (429)
++++++. .+++++|+|+++++..++++++++|| +++.|+| ..+...+...|++++.++++.+ +
T Consensus 83 ~la~~~~--------~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~ 152 (456)
T 2ez2_A 83 TVQELFG--------FKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNI 152 (456)
T ss_dssp HHHHHHC--------CSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCC
T ss_pred HHHHHhC--------CCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccc
Confidence 9999973 34899999999999999999999999 7889999 7778899999999999998632 2
Q ss_pred --CCCCCHHHHHhhcccCC----cEEEEcCCCC-CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc----------cc
Q 014172 213 --NFLLDPKVLESKLTEKS----RLLILCSPSN-PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH----------II 275 (429)
Q Consensus 213 --~~~~d~e~l~~~l~~~~----~~i~l~~p~N-PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~----------~~ 275 (429)
++.+|+++|++++++++ ++|++++|+| |||.+++.+++++|+++|++| |+++|+||+|.. +.
T Consensus 153 ~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~-~i~li~De~~~~g~~~~~~~~~~~ 231 (456)
T 2ez2_A 153 AFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH-GIKVFYDATRCVENAYFIKEQEQG 231 (456)
T ss_dssp SCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHHHSTT
T ss_pred cccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHc-CCeEEEEccccccccccccccccc
Confidence 36789999999997655 8899999999 999999999999999999999 999999999986 34
Q ss_pred cCCCCCCccc-cCCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcc-----cCCCchHHHHH-HHHHH
Q 014172 276 YAPATHTSFA-SLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF-----TSGASSISQKA-GVAAL 347 (429)
Q Consensus 276 ~~~~~~~~~~-~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~-----~~~~~~~~q~a-a~~~l 347 (429)
|.+....++. .+.. ...++++ |++|.++ +| |.||+++ ++++++.+....... ..+.+.....+ +.+.+
T Consensus 232 ~~g~~~~~~~~~~~~-~~d~~~~-S~kk~~~-~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~ 307 (456)
T 2ez2_A 232 FENKSIAEIVHEMFS-YADGCTM-SGKKDCL-VN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR 307 (456)
T ss_dssp CTTSCHHHHHHHHHT-TCSEEEE-ETTTTTC-CS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH
T ss_pred cCCcchhhhhhhhcc-cCCEEEE-eCcccCC-CC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHH
Confidence 5442111110 0111 1234444 7888765 67 7899998 688888877654321 11223223222 33333
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHH-----HHHHHH
Q 014172 348 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESL-----CRYLLD 422 (429)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~Ll~ 422 (429)
+. .+ +...++.+++.+++.+.|++. |+++..|.+++|+|++++.... + .+..++ +++|++
T Consensus 308 ~~---~~---~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~~~~~~~~~~~~~~----~----~~~~~~~~~~l~~~L~~ 372 (456)
T 2ez2_A 308 EA---MQ---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFCE----H----LTQDEFPAQSLAASIYV 372 (456)
T ss_dssp HH---TC---HHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEEHHHHTT----T----SCGGGCHHHHHHHHHHH
T ss_pred HH---hH---HHHHHHHHHHHHHHHHHHhcC-CCccccCCCceEEEEEhHHhcC----C----CChhhccHHHHHHHHHH
Confidence 22 11 234444555667788888776 8888788899999998742100 0 133344 777766
Q ss_pred hCCeec
Q 014172 423 KAQVLL 428 (429)
Q Consensus 423 ~~gV~v 428 (429)
++||.+
T Consensus 373 ~~gv~~ 378 (456)
T 2ez2_A 373 ETGVRS 378 (456)
T ss_dssp HHSEEC
T ss_pred hcCeee
Confidence 668864
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-32 Score=267.76 Aligned_cols=295 Identities=18% Similarity=0.152 Sum_probs=223.7
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcC---CCCCCCCCC----CHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREG---FTRYTPNAG----TLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+.+|+|+.++ .+++.++.+.+++.+.+.+. ...|....| ..++++++++++ |. +..++++++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~----g~----~~~i~~~sG 128 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT----GF----DECLLSQSG 128 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH----TC----SEEEEESCH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh----CC----CeEEEecch
Confidence 356789998886 34666899999999998762 122222223 456666666665 42 234555666
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccC
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGS 243 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~ 243 (429)
++++..++++++++||.|+++.|+|.++...++..|++++.++. .|+++|++++++ ++++|++++|+||||.
T Consensus 129 t~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~nptG~ 201 (409)
T 3kki_A 129 WNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIYSTLGT 201 (409)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBCTTTCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCCCCCCC
Confidence 79999999999999999999999999999999999999998874 489999999975 5899999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
+++ +++|.++|++| |++||+||+|..+.++..............+.++++.||||.++++| ||+++++++++.
T Consensus 202 ~~~---l~~l~~la~~~-~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~v~~~~~~~~~ 274 (409)
T 3kki_A 202 IAP---LAELVNISKEF-GCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAYRA---GAIWCNNEVNRC 274 (409)
T ss_dssp BCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEEESSSGGGT
T ss_pred cCC---HHHHHHHHHHc-CCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhCCCc---eEEEECHHHHHH
Confidence 999 99999999999 99999999999866543222222112212345699999999999664 999999988887
Q ss_pred HHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC
Q 014172 324 CNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (429)
Q Consensus 324 l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~ 401 (429)
+...... +....+...+.++.++++. .+..+++++.++++++++.+.|+++ |+++. ..++++|+.++..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~aa~~aal~~----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~--~~~~~~~~~~~~~-- 345 (409)
T 3kki_A 275 VPFISYPAIFSSTLLPYEAAGLETTLEI----IESADNRRQHLDRMARKLRIGLSQL-GLTIR--SESQIIGLETGDE-- 345 (409)
T ss_dssp HHHHCHHHHHSBCCCHHHHHHHHHHHHH----HHHCHHHHHHHHHHHHHHHHHHHTT-TCCCC--CSSSEEEEEEESH--
T ss_pred HHHhCcCccccCCCcHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHHHHHHHc-CCccC--CCCCEEEEEeCCH--
Confidence 7764332 2334566677777777775 2233678889999999999999998 77765 3566788888643
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|+++ ||.+
T Consensus 346 ---------~~~~~~~~~L~~~-Gv~v 362 (409)
T 3kki_A 346 ---------RNTEKVRDYLESN-GVFG 362 (409)
T ss_dssp ---------HHHHHHHHHHHHT-TEEC
T ss_pred ---------HHHHHHHHHHHHC-CceE
Confidence 2467899999887 9876
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=260.79 Aligned_cols=290 Identities=15% Similarity=0.152 Sum_probs=223.3
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 014172 99 RLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 177 (429)
Q Consensus 99 ~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 177 (429)
+|+.|+|++++|+.+.+++.+.+..+ .|++ ..+..+||+++++++. .++|++|+|+++++.+++.++.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~--~y~~~~~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~l~~l~- 88 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQ--WLSNGGPLVREFEERVAGLAG--------VRHAVATCNATAGLQLLAHAAG- 88 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHT--CCSSSCHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHHT-
T ss_pred cccccCCCCCChHHHHHHHHHHHhcC--CcccCCHHHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcC-
Confidence 68999999999999999999988764 5766 6788999999999974 2589999999999999999985
Q ss_pred CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHH
Q 014172 178 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257 (429)
Q Consensus 178 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a 257 (429)
+||+|++++|+|.++...++..|++++.+++++ +++.+|+++|++.+++++++|+++ ||||...+ +++|.++|
T Consensus 89 ~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~tG~~~~---l~~i~~la 161 (424)
T 2po3_A 89 LTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTPRTSAVVGV---HLWGRPCA---ADQLRKVA 161 (424)
T ss_dssp CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCTTEEEEEEE---CGGGCCCC---HHHHHHHH
T ss_pred CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCcCCcEEEEE---CCCCCcCC---HHHHHHHH
Confidence 789999999999999999999999999999875 457799999999998889999875 48999877 99999999
Q ss_pred HhCCCeEEEEccCCc-ccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhcccCC-
Q 014172 258 AKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG- 334 (429)
Q Consensus 258 ~~~~~i~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~~~- 334 (429)
++| |++||+||+|. ++.+++. ++..+ .+ +++.||||..+++|+|+||++++ +++++.+.........+
T Consensus 162 ~~~-~~~li~Dea~~~g~~~~~~---~~~~~---~d--i~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~ 232 (424)
T 2po3_A 162 DEH-GLRLYFDAAHALGCAVDGR---PAGSL---GD--AEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLP 232 (424)
T ss_dssp HHT-TCEEEEECTTCTTCEETTE---ETTSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCT
T ss_pred HHc-CCEEEEECccccCCeECCe---ecccc---cC--EEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccc
Confidence 999 99999999999 4656542 22222 12 89999997667778999999998 88988887664432111
Q ss_pred --------CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCce---EE-EEEecCCccC
Q 014172 335 --------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---FY-LFIDFSTYYG 401 (429)
Q Consensus 335 --------~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~---~~-~~~~l~~~~~ 401 (429)
...+.+.++..++.. .++++...++.+++++++.+.|++++|+++.. |+++ ++ +++.++...
T Consensus 233 ~~~~~~g~~~~~~~~~aa~~l~~----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~- 307 (424)
T 2po3_A 233 GGSPAGGTNAKMSEAAAAMGLTS----LDAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEAT- 307 (424)
T ss_dssp TCCTTCCCBCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHH-
T ss_pred ccccccCcCCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCcc-
Confidence 001122333333332 34567777888888899999999888888875 4443 33 336776300
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+ .+..++.+.|.+ .||.+
T Consensus 308 ---~~----~~~~~l~~~L~~-~gI~v 326 (424)
T 2po3_A 308 ---TG----IHRDLVMEVLKA-EGVHT 326 (424)
T ss_dssp ---HS----SCHHHHHHHHHH-TTEEC
T ss_pred ---ch----hhHHHHHHHHHH-CCCce
Confidence 00 267788887755 59876
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=263.97 Aligned_cols=296 Identities=15% Similarity=0.044 Sum_probs=223.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC----CCCC----CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYT----PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~----~~Y~----~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
+.+.|+.+.+. ++|+.+.+++.+.+.... ..|. ...+..++++++++++ | .++++|++|+|++++
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t~a 98 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV----N--ADPGGVVLGADRAVL 98 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh----C--CCCCeEEEeCChHHH
Confidence 37899988877 668899999999886532 1232 1234456777777765 4 356899999999999
Q ss_pred HHHHHHHh---cCCCCEEEEcCCCCCChHHHHHH----cCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 168 ILQAVLAV---CSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 168 l~~~l~~l---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
+.+++.++ +++||+|+++.|+|.++...+.. .|++++.++++++ ++.+|+++|++.+++++++|++++|+||
T Consensus 99 l~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~l~~~~~~v~~~~~~np 177 (406)
T 3cai_A 99 LSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIE-TGELPTWQWESLISKSTRLVAVNSASGT 177 (406)
T ss_dssp HHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTT-TCCCCGGGHHHHCCTTEEEEEEESBCTT
T ss_pred HHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcc-cCCcCHHHHHHHhCCCceEEEEeCCcCC
Confidence 99999887 78999999999999987655443 7999999998743 4568999999999989999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceee-EEEcCHH
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKH 319 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G-~v~~~~~ 319 (429)
||.+++ +++|.++|++| |++||+|++|.. +.....+.. .+.++++.|+||.+| ++ +| |++++++
T Consensus 178 tG~~~~---l~~i~~l~~~~-~~~li~D~a~~~----g~~~~~~~~----~~~d~~~~s~~K~~g-~~--~G~~~~~~~~ 242 (406)
T 3cai_A 178 LGGVTD---LRAMTKLVHDV-GALVVVDHSAAA----PYRLLDIRE----TDADVVTVNAHAWGG-PP--IGAMVFRDPS 242 (406)
T ss_dssp TCBBCC---CHHHHHHHHHT-TCEEEEECTTTT----TTCCCCHHH----HCCSEEEEEGGGGTS-CS--CEEEEESCHH
T ss_pred ccccCC---HHHHHHHHHHc-CCEEEEEccccc----CCCCCCchh----cCCCEEEeehhhhcC-CC--cCeEEEEehH
Confidence 999999 88999999999 999999999974 221122222 245689999999886 54 89 9999998
Q ss_pred HHHHHHHHhh---------cccCCCchHHHHHHHHHHhcCCC-C-----------hHHHHHHHHHHHHHHHHHHHHhccC
Q 014172 320 FVAACNKIQS---------QFTSGASSISQKAGVAALGLGYA-G-----------GEVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 320 ~~~~l~~~~~---------~~~~~~~~~~q~aa~~~l~~~~~-~-----------~~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
+++.+..... ....+++...+.++.++++.... + .+++++++++++++++++.+.|+++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 322 (406)
T 3cai_A 243 VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSL 322 (406)
T ss_dssp HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 8776654321 11233455555555555543100 0 0157888999999999999999998
Q ss_pred CCceeecCC---ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 379 EGVKMSEPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 ~g~~~~~p~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+++..+. ++ ++++.+++. +..+++++|.+ .||.+
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~L~~-~gi~v 361 (406)
T 3cai_A 323 PLVMLIGRPEAQIP-VVSFAVHKV------------PADRVVQRLAD-NGILA 361 (406)
T ss_dssp TTEEECCCCSSBCS-EEEEEETTB------------CHHHHHHHHHH-TTEEC
T ss_pred CCeEEcCCccccCC-EEEEEECCc------------CHHHHHHHHHH-CCcEE
Confidence 888887664 55 578888642 67889998865 49876
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=259.91 Aligned_cols=297 Identities=13% Similarity=0.063 Sum_probs=227.6
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
+.+|+|+.+.+. ++|+.+.+++.+.+. +|.+..|..++++++++++.+.+| .++++|++|+|+++++..++++
T Consensus 13 p~~i~l~~~~~~-~~~~~v~~a~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~~~~g~t~a~~~~~~~ 85 (359)
T 1svv_A 13 PKPYSFVNDYSV-GMHPKILDLMARDNM----TQHAGYGQDSHCAKAARLIGELLE--RPDADVHFISGGTQTNLIACSL 85 (359)
T ss_dssp --CEECSCSCSS-CCCHHHHHHHHHHTT----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEEEESCHHHHHHHHHHH
T ss_pred CeeEEecCCCcC-CCCHHHHHHHHHHHh----hccccccccHHHHHHHHHHHHHhC--CCCccEEEeCCchHHHHHHHHH
Confidence 458999998776 678899999988764 466677889999999999999888 4678999999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHH--HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC-------CcEEEEcCCCCCccCCC
Q 014172 175 VCSPGDEVIIPAPFWVSYPE--MARIADATPVILPTRISENFLLDPKVLESKLTEK-------SRLLILCSPSNPTGSVY 245 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~-------~~~i~l~~p~NPtG~~~ 245 (429)
++++||+|++++|+|+++.. .++..|++++.+|.+ ++.+|+++|++.++++ +++|++++| ||||.++
T Consensus 86 ~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~ 161 (359)
T 1svv_A 86 ALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQY 161 (359)
T ss_dssp HCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC
T ss_pred HhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec
Confidence 99999999999999999887 588899999999974 5679999999999765 899999999 7999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
+.+++++|.++|++| |+++|+||+|..+.++... .....+.-.....+++.|++|..+ ..++|++++++++++.+.
T Consensus 162 ~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~d~~~~s~~K~g~--~~~~g~l~~~~~~~~~~~ 237 (359)
T 1svv_A 162 TKQELEDISASCKEH-GLYLFLDGARLASALSSPV-NDLTLADIARLTDMFYIGATKAGG--MFGEALIILNDALKPNAR 237 (359)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTHHHHHTSTT-CCCCHHHHHHHCSEEEEECTTTTC--SSCEEEEECSGGGCTTHH
T ss_pred CHHHHHHHHHHHHHh-CCEEEEEccchhhhhcCCC-cchhhhhhhhcCCEEEEecccCCC--CCceEEEEEcccHHHHHH
Confidence 999999999999999 9999999999554332111 111100000122377889999744 355799999998877776
Q ss_pred HHhh--cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCc
Q 014172 326 KIQS--QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 403 (429)
Q Consensus 326 ~~~~--~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~ 403 (429)
.... ......+......+..++. +..+++++++++++++++.+.| +.+|+++..|.+++|+|++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~~~~~~~~~~~------ 305 (359)
T 1svv_A 238 HLIKQRGALMAKGWLLGIQFEVLMK-----DNLFFELGAHSNKMAAILKAGL-EACGIRLAWPSASNQLFPILE------ 305 (359)
T ss_dssp HHHHHTTCCCTTTHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHH-HHTTCCBSSCCSSSEECBEEE------
T ss_pred HHHhcCCcccccchhhHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHh-ccCCeEEccCCccceEEEEcC------
Confidence 5421 1111112222222333443 2346788899999999999999 566898888889999998764
Q ss_pred ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 404 AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++++|++++||.+
T Consensus 306 ----------~~~~~~l~~~~gi~v 320 (359)
T 1svv_A 306 ----------NTMIAELNNDFDMYT 320 (359)
T ss_dssp ----------HHHHHHHTTTEECEE
T ss_pred ----------HHHHHHHHHhcCEEE
Confidence 378888887768764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-31 Score=265.71 Aligned_cols=291 Identities=14% Similarity=0.135 Sum_probs=223.7
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHHHHHHHHhc
Q 014172 100 LAAGEPDFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 100 L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~ 176 (429)
+..+.++.++++.+.+++.+.+. ..|++. ....++|++++++++ .+++ +|++|+|+++++..++.+++
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~~------~~~~~~v~~~~g~t~al~~~~~~~~ 90 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVL---SNFHAELFRTMDEVKDGLRYIFQ------TENRATMCVSGSAHAGMEAMLSNLL 90 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCC---CTTCHHHHHHHHHHHHHHHHHHT------CCCSCEEEESSCHHHHHHHHHHHHC
T ss_pred eeecCCCCCCCHHHHHHhccccc---cCCChhHHHHHHHHHHHHHHHhC------CCCCcEEEECCcHHHHHHHHHHHhc
Confidence 34455566678888887765432 235432 125678888888864 3566 89999999999999999999
Q ss_pred CCCCEEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 177 SPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
++||+|++++|+|.++. ..++..|++++.++++. ++.+|+++|++++++ ++++|++++|+||||.+++ +++|
T Consensus 91 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i 165 (396)
T 2ch1_A 91 EEGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGV 165 (396)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTH
T ss_pred CCCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC---HHHH
Confidence 99999999999999985 47888999999999863 466899999999987 8999999999999999999 8899
Q ss_pred HHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh-----
Q 014172 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----- 328 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~----- 328 (429)
.++|++| |++||+||+|.. +.....+.. .+..+++.|++|.++ .+.++||+++++++++.+....
T Consensus 166 ~~l~~~~-~~~li~Dea~~~----g~~~~~~~~----~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~ 235 (396)
T 2ch1_A 166 GQICHQH-DCLLIVDAVASL----CGVPFYMDK----WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKV 235 (396)
T ss_dssp HHHHHHT-TCEEEEECTTTB----TTBCCCTTT----TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSC
T ss_pred HHHHHHc-CCEEEEEccccc----cCCccchhh----cCcCEEEEcCCcccc-CCCCeEEEEECHHHHHhhhhccCcccc
Confidence 9999999 999999999983 222222221 234577899999875 4456799999998887765310
Q ss_pred ------------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCce-
Q 014172 329 ------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGA- 389 (429)
Q Consensus 329 ------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~- 389 (429)
.....+++...|.++.++++.. .++++++++++++++++++.+.|+++ |+++..++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 312 (396)
T 2ch1_A 236 FYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRH 312 (396)
T ss_dssp GGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGG
T ss_pred eEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHC-CCeeccCCccc
Confidence 1122346777888888888741 12457888999999999999999998 8888777663
Q ss_pred ---EEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 390 ---FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 390 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++++.++.. .+..+++++|++++||.+
T Consensus 313 ~~~~~~~~~~~~~-----------~~~~~~~~~L~~~~gi~v 343 (396)
T 2ch1_A 313 RLPTVTGIMIPKG-----------VDWWKVSQYAMNNFSLEV 343 (396)
T ss_dssp BCTTEEEEECCTT-----------CCHHHHHHHHHHHHCBCC
T ss_pred cCCceEEEEcCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 3688888632 268899999988778875
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-31 Score=260.15 Aligned_cols=291 Identities=14% Similarity=0.114 Sum_probs=214.9
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCC----CCCCC----CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFT----RYTPN----AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~----~Y~~~----~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
+.|+.+.+. ++|+.+++++.+.+.+... .|... .+..+++++++++ +| .++++|++|+|+++++.
T Consensus 2 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~----~g--~~~~~v~~~~g~t~a~~ 74 (382)
T 4eb5_A 2 AYFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKL----VN--GGGGTVVFTSGATEANN 74 (382)
T ss_dssp CBCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHH----HT--CTTEEEEEESSHHHHHH
T ss_pred eeeccCCCC-CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHH----hC--CCCCeEEEcCchHHHHH
Confidence 345555544 5689999999998864211 13221 1234555555555 45 35689999999999999
Q ss_pred HHHHHhc----CCCCEEEEcCCCCCChHHHHHH---cCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 170 QAVLAVC----SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 170 ~~l~~l~----~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
+++.++. ++||+|++++|+|+++...+.. .|++++.++++. ++.+|+++|++++++++++|++++|+||||
T Consensus 75 ~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 152 (382)
T 4eb5_A 75 LAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIG 152 (382)
T ss_dssp HHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTC
T ss_pred HHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCCeEEEEeccCCCcc
Confidence 9999998 8999999999999988776654 699999999863 466899999999998899999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH-H
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF-V 321 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~-~ 321 (429)
.+++ +++|.++|++| |++ |+|++|.. +..+..+.. .+.++++.||||.+|++| +||++++++. +
T Consensus 153 ~~~~---l~~i~~l~~~~-~~~-i~D~a~~~----g~~~~~~~~----~~~di~~~s~sK~~g~~g--~G~~~~~~~~~l 217 (382)
T 4eb5_A 153 TIQP---VEEISEVLAGK-AAL-HIDATASV----GQIEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEAKL 217 (382)
T ss_dssp BBCC---HHHHHHHHTTS-SEE-EEECTTTB----TTBCCCHHH----HTCSEEEEETGGGTCCSS--CEEEEEETTCCC
T ss_pred ccCC---HHHHHHHHHHC-CCE-EEEcchhc----CCcccCccc----cCCCEEEeehHHhcCCCc--eEEEEEcccccc
Confidence 9999 88999999999 999 99999984 222112221 245689999999988666 7999887763 1
Q ss_pred HHHHH----HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc---eEEEEE
Q 014172 322 AACNK----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFI 394 (429)
Q Consensus 322 ~~l~~----~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~---~~~~~~ 394 (429)
..... .......+++...+.++.++++. ..+++++++++++++++++.+.|++++|+++..+.+ +.++++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 294 (382)
T 4eb5_A 218 QPVILGGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNV 294 (382)
T ss_dssp CCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEE
T ss_pred CceecCCCccccccCCCccHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEE
Confidence 11100 01122234566666666677764 345678899999999999999999988888876642 335777
Q ss_pred ecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++. +..+++++|.++ ||.+
T Consensus 295 ~~~~~------------~~~~~~~~l~~~-gi~v 315 (382)
T 4eb5_A 295 RFSYI------------EGESIVLSLDMA-GIQA 315 (382)
T ss_dssp EETTS------------CHHHHHHHHHHH-TCBC
T ss_pred EeCCc------------CHHHHHHHHHHC-CEEE
Confidence 77632 678899988765 8875
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-31 Score=259.37 Aligned_cols=290 Identities=13% Similarity=0.107 Sum_probs=220.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCC--------
Q 014172 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP-------- 178 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-------- 178 (429)
.++++.+.+++.+.+......|....+..++++.+++++.+.+| .++++|++|+|+++++..++.+++.+
T Consensus 40 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~ 117 (397)
T 3f9t_A 40 SNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLN--NKDAYGHIVSGGTEANLMALRCIKNIWREKRRKG 117 (397)
T ss_dssp CCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTT--CTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhC--CCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhc
Confidence 34567889999888765443443223557888888888888888 46789999999999999999998776
Q ss_pred -----CCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 179 -----GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 179 -----gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
||+|+++.|+|.++...++..|++++.+|++. ++.+|++.|++++++ ++++|++++|+||||.+.+ +++
T Consensus 118 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~ 192 (397)
T 3f9t_A 118 LSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDN---IEE 192 (397)
T ss_dssp CCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCC---HHH
T ss_pred ccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCC---HHH
Confidence 99999999999999999999999999999864 467899999999998 8999999999999999998 899
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCC-Cc------cccCCCCCCceEEEeccChhcccccceeeEEEcCHH-HHHHH
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATH-TS------FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAAC 324 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~-~~------~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-~~~~l 324 (429)
|.++|++| |+++|+||+|..+.++.... .. ...+. . +..+++.|++|.++ +|.|+||++++++ +.+.+
T Consensus 193 i~~l~~~~-~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~s~~K~~~-~~~~~g~~~~~~~~~~~~~ 268 (397)
T 3f9t_A 193 LSKIAKEN-NIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFS-L-GVDSITIDPHKMGH-CPIPSGGILFKDIGYKRYL 268 (397)
T ss_dssp HHHHHHHH-TCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGG-G-TCSEEECCTTTTTC-CCSSCEEEEESSGGGGGGT
T ss_pred HHHHHHHh-CCeEEEEccccchhhhhccccccccccccccccc-c-cCCeEEEccccccC-CCCCceEEEEeCHHHHHhh
Confidence 99999999 99999999999765432110 00 01111 1 45688999999876 7889999987554 44433
Q ss_pred HHHhhccc-----------CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEE
Q 014172 325 NKIQSQFT-----------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393 (429)
Q Consensus 325 ~~~~~~~~-----------~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~ 393 (429)
........ .+.+...+.++...+. ..++++..++++++++++.+.|+++ |+++..+..+.++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~ 342 (397)
T 3f9t_A 269 DVDAPYLTETRQATILGTRVGFGGACTYAVLRYLG-----REGQRKIVNECMENTLYLYKKLKEN-NFKPVIEPILNIVA 342 (397)
T ss_dssp CEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEEE
T ss_pred ccCCccccCCCccccccccccchHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcCCCccEEE
Confidence 22111111 1124455555555554 4567888889999999999999998 88865555555577
Q ss_pred EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++ +..+++++|.++ ||.+
T Consensus 343 ~~~~--------------~~~~~~~~l~~~-gi~v 362 (397)
T 3f9t_A 343 IEDE--------------DYKEVCKKLRDR-GIYV 362 (397)
T ss_dssp EECT--------------THHHHHHHHHHT-TCBC
T ss_pred EEeC--------------CHHHHHHHHHhC-CeEE
Confidence 7775 467899988877 8875
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=263.16 Aligned_cols=291 Identities=13% Similarity=0.135 Sum_probs=220.3
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC--CCCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAV 172 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l 172 (429)
..++++.|. +++|+.+.+++.+.+.. .|.+ ..+..++++++++++ | .+++ +|++|+|+++++..++
T Consensus 19 ~~~~~~~g~--~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~----g--~~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 19 NKLLMGPGP--SNAPQRVLDAMSRPILG---HLHPETLKIMDDIKEGVRYLF----Q--TNNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCEECSSSC--CCCCHHHHHHTTSCCCC---TTSHHHHHHHHHHHHHHHHHH----T--CCCSEEEEESSCHHHHHHHHH
T ss_pred CeEEecCCC--CCCCHHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHHHh----C--CCCCcEEEEcCcHHHHHHHHH
Confidence 457776663 55778888887765432 2422 234456666666665 4 3454 8999999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
.+++++||+|++++|+|+++. ..++..|++++.++++. ++.+|++.+++++++ ++++|++++|+||||.+++
T Consensus 88 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~--- 162 (393)
T 2huf_A 88 CNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV--GQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQG--- 162 (393)
T ss_dssp HHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---
T ss_pred HHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC--CCCCCHHHHHHHHhccCCcEEEEEccCCCccccCC---
Confidence 999999999999999998843 34566899999999864 356899999999987 8999999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh-cccccceeeEEEcCHHHHHHHHHHh
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA-FAMTGWRLGYIAGPKHFVAACNKIQ 328 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~~G~R~G~v~~~~~~~~~l~~~~ 328 (429)
+++|.++|++| |+++|+|++|.. +..... +. ..+.++++.|+||. +|++|+ ||+++++++++.+....
T Consensus 163 l~~i~~~~~~~-~~~li~D~a~~~----~~~~~~---~~-~~~~d~~~~s~sK~l~g~~G~--G~~~~~~~~~~~~~~~~ 231 (393)
T 2huf_A 163 LEGVGALCHQH-NCLLIVDTVASL----GGAPMF---MD-RWEIDAMYTGSQKVLGAPPGI--TPVSFSHRAVERYKRRN 231 (393)
T ss_dssp CTTHHHHHHHT-TCEEEEECTTTB----TTBCCC---TT-TTTCSEEECCSSSTTCCCSSC--EEEEECHHHHHHHHTCS
T ss_pred HHHHHHHHHHc-CCEEEEEccccc----CCCCcc---hh-hcCccEEEECCCcccccCCCe--EEEEECHHHHHHHhhcC
Confidence 88999999999 999999999864 221112 21 13567999999997 456776 99999999998887541
Q ss_pred ---hc--------------------ccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 329 ---SQ--------------------FTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 329 ---~~--------------------~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
.. ...+++...+.++.++++. ..+ .+++.+++++++++++.+.|+++ |+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 307 (393)
T 2huf_A 232 TKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAM---ACEEGLPALIARHEDCAKRLYRGLQDA-GFELY 307 (393)
T ss_dssp SCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBS
T ss_pred CCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHH---HHHhCHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 11 1123556666666667764 233 37788899999999999999998 88877
Q ss_pred cCC---ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQ---GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+. ++++++++++.. .+..+++++|++++||.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~L~~~~gi~v 343 (393)
T 2huf_A 308 ADPKDRLSTVTTIKVPQG-----------VDWLKAAQYAMKTYLVEI 343 (393)
T ss_dssp SCGGGBCTTEEEEECCTT-----------CCHHHHHHHHHHHHCEEC
T ss_pred cCccccCCcEEEEEcCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 663 455788888632 268899999988779876
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=255.70 Aligned_cols=296 Identities=17% Similarity=0.096 Sum_probs=217.0
Q ss_pred HHhcCC-CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 90 LAQAGV-SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 90 ~~~~g~-~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
+...|. ++|+++.+.++.++|+.+++++. .|. +...+++.+++++.+.+|.+ +++++++++|+++++
T Consensus 22 i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~--------~~~---~~~~~~~~~~~~~a~~~g~~-~~~~~~~~~ggt~a~ 89 (374)
T 2aeu_A 22 LNEKGRDALYDLSGLSGGFLIDEKDKALLN--------TYI---GSSYFAEKVNEYGLKHLGGD-ENDKCVGFNRTSSAI 89 (374)
T ss_dssp HHHTCGGGCEECSSCCCCCCCCHHHHHHHT--------STT---HHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred HhccCccceeeecccCCCCCCCHHHHHHHH--------Hhc---CchHHHHHHHHHHHHHhCCC-CcceEEEEcChHHHH
Confidence 345677 89999999998899999999875 221 11456778888887777753 357899999999999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHH---HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcE-EEEcCCCCCccCC
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPE---MARIADATPVILPTRISENFLLDPKVLESKLTEKSRL-LILCSPSNPTGSV 244 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~-i~l~~p~NPtG~~ 244 (429)
..++.++ +||+|+++.|+|+++.. .++..|++++.+ .|+++++++ ++++++ |++++||||||.
T Consensus 90 ~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~~~~~~~v~~~~p~nptG~- 156 (374)
T 2aeu_A 90 LATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-IDKDTLVIITGSTMDLKVI- 156 (374)
T ss_dssp HHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-CCTTEEEEEECBCTTSCBC-
T ss_pred HHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-CCCccEEEEEccCCCCCCC-
Confidence 9999988 99999999998887543 677889999888 288999988 778999 999999999997
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHH
Q 014172 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l 324 (429)
+..++++|.++|++| |+++|+||+|+.+..+.....+... .+.+++++||||.+ +|+|+||+++++++++.+
T Consensus 157 -~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~~----~~~di~~~S~sK~l--~g~~~G~~~~~~~~~~~l 228 (374)
T 2aeu_A 157 -ELENFKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALK----LGADLVVTSTDKLM--EGPRGGLLAGKKELVDKI 228 (374)
T ss_dssp -CHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHH----HTCSEEEEETTSSS--SSCSCEEEEEEHHHHHHH
T ss_pred -CcccHHHHHHHHHHc-CCEEEEECCcccccccccccCCccc----cCCcEEEecCcccc--cCcceEEEEECHHHHHHH
Confidence 777899999999999 9999999999876421110111111 23468999999985 579999999999999999
Q ss_pred HHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH----HHHHHHHhccC---CCceee-cCCceEEEEEec
Q 014172 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER----RDFLVKSFGEL---EGVKMS-EPQGAFYLFIDF 396 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~----r~~l~~~L~~l---~g~~~~-~p~~~~~~~~~l 396 (429)
......+..+++.+.+.++.++++.. ..+.+++..+..+.. ++.+.+.|..+ +|+.+. .|.|.+|+|.++
T Consensus 229 ~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~ 306 (374)
T 2aeu_A 229 YIEGTKFGLEAQPPLLAGIYRALKNF--NLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYK 306 (374)
T ss_dssp HHHHHTTTCBCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEES
T ss_pred HHhhccccCCCCHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecc
Confidence 88776666667889999999888762 121222222222222 45566666654 356653 566767677655
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.... ..++.+++.++++++||.+
T Consensus 307 ~~~~~--------~~~~~~~~~~ll~~~gV~v 330 (374)
T 2aeu_A 307 DDTIN--------IKKLIEIGFNLLKNYGIIT 330 (374)
T ss_dssp SHHHH--------HHHHHHHHHHHHHHHCEEC
T ss_pred ccccc--------ccchHHHHHHHHHhCCEEE
Confidence 42100 0012348888888789986
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-31 Score=261.13 Aligned_cols=293 Identities=12% Similarity=0.088 Sum_probs=216.9
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
.+.|..+.+ .++|+.+.+++.+.+.. ...|....+..++|+++++++ | .++++|++|+|+++++..++++++
T Consensus 9 ~~yl~~~~~-~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~t~g~t~a~~~~~~~~~ 80 (392)
T 2z9v_A 9 PVITLTAGP-VNAYPEVLRGLGRTVLY-DYDPAFQLLYEKVVDKAQKAM----R--LSNKPVILHGEPVLGLEAAAASLI 80 (392)
T ss_dssp CSEECSSSC-CCCCHHHHHHTTSCCCC-TTSHHHHHHHHHHHHHHHHHT----T--CSSCCEEESSCTHHHHHHHHHHHC
T ss_pred cceeecCCC-cCCCHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHHh----C--CCCCEEEEeCCchHHHHHHHHHhc
Confidence 455665543 35678888887765432 111111123456666666665 5 356899999999999999999999
Q ss_pred CCCCEEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc--ccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 177 SPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l--~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
++||+|++++|+|+++. ..++..|++++.++++.+ +.+|++++++++ .+++++|++++|+||||.+++ +++
T Consensus 81 ~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~---l~~ 155 (392)
T 2z9v_A 81 SPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN--EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINP---IDA 155 (392)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT--SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECC---HHH
T ss_pred CCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC--CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceecc---HHH
Confidence 99999999999998763 445668999999998643 458999999999 458999999999999999999 889
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHHHh---
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ--- 328 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~~~--- 328 (429)
|.++|++| |++||+|++|+. +.....+.. .+.++++.|+||.+ +++| +||+++++++++.+....
T Consensus 156 i~~l~~~~-~~~li~D~a~~~----g~~~~~~~~----~~~d~~~~s~sK~~~~~~g--~G~l~~~~~~~~~l~~~~~g~ 224 (392)
T 2z9v_A 156 IGALVSAH-GAYLIVDAVSSF----GGMKTHPED----CKADIYVTGPNKCLGAPPG--LTMMGVSERAWAKMKANPLAP 224 (392)
T ss_dssp HHHHHHHT-TCEEEEECTTTB----TTBSCCGGG----GTCSEEEECSSSTTCCCSC--CEEEEECHHHHHHHHTCTTSC
T ss_pred HHHHHHHc-CCeEEEEccccc----CCccccccc----ccceEEEecCcccccCCCc--eeEEEECHHHHHHhhhccCCC
Confidence 99999999 999999999974 221112222 24568999999965 4445 599999999888876421
Q ss_pred -----------------hcccCCCchHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCceeecCC---
Q 014172 329 -----------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--- 387 (429)
Q Consensus 329 -----------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~--- 387 (429)
.....+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++..|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~ 300 (392)
T 2z9v_A 225 RASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL---YLNEGPEAVWARHALTAKAMRAGVTAM-GLSVWAASDSI 300 (392)
T ss_dssp CSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGG
T ss_pred CceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHhccHHHHHHHHHHHHHHHHHHHHHc-CCeeccCCccc
Confidence 112233455666666667764 2444 7788999999999999999988 88877633
Q ss_pred -ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 -GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++++|+.++.. .+..+++++|.+++||.+
T Consensus 301 ~~~~~~~~~~~~~-----------~~~~~l~~~L~~~~gi~v 331 (392)
T 2z9v_A 301 ASPTTTAVRTPDG-----------VDEKALRQAARARYGVVF 331 (392)
T ss_dssp BCTTEEEEECCTT-----------CCHHHHHHHHHHHHCEEC
T ss_pred cCCceEEEECCCC-----------CCHHHHHHHHHhcCCEEE
Confidence 456688888632 267899999988778875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=259.86 Aligned_cols=291 Identities=14% Similarity=0.138 Sum_probs=219.0
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREG---FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
.|+.++||+.|.+ +++ +++.+.+++.+.+.+. ...| +..+..++++++++++ |. +++|++|+|+++
T Consensus 26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~----g~---~~~v~~~~g~t~ 97 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF----WT---EGKVFFANSGTE 97 (375)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS----SS---CEEEEEESSHHH
T ss_pred CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc----CC---CCeEEEeCchHH
Confidence 4567899999874 566 6899999999988653 2346 4556778888888774 43 489999999999
Q ss_pred HHHHHHHH---hc---CCC-CEEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCCCCHHHHHhhcc
Q 014172 167 SILQAVLA---VC---SPG-DEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 167 al~~~l~~---l~---~~g-d~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
++.+++++ ++ ++| |+|++++|+|+.+...+...+.. +..++. .|+++|+++++
T Consensus 98 a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 170 (375)
T 2eh6_A 98 SVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLD 170 (375)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhc
Confidence 99998875 45 788 99999999999987765554332 233332 48999999999
Q ss_pred cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 227 EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
+++++|++++|+||||.+ .+.+++++|.++|++| |+++|+||+|.++.+.+.. .++..+.. ... + .||||.++
T Consensus 171 ~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~-~~~li~De~~~~~~~~~~~-~~~~~~~~-~~d-~--~s~SK~~~ 244 (375)
T 2eh6_A 171 EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEK-DVLLIIDEVQTGIGRTGEF-YAYQHFNL-KPD-V--IALAKGLG 244 (375)
T ss_dssp TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTC-CCS-E--EEECGGGG
T ss_pred CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHh-CCEEEEeccccCCCCCCcc-hhhhhcCC-CCC-E--EEEccccc
Confidence 889999999999999999 5688899999999999 9999999999976443321 12222221 122 2 28899999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
+|+|+||+++++++++.+.......+.+.+.+.+.++.++|+. .+ +..++++++++++.+.|++++ ....
T Consensus 245 -~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~---~~~~~~~~~~~~l~~~L~~~~-~~~~- 314 (375)
T 2eh6_A 245 -GGVPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDE----VE---KLLPHVREVGNYFKEKLKELG-KGKV- 314 (375)
T ss_dssp -TTSCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHTT-SSEE-
T ss_pred -CCCCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHh-cCCc-
Confidence 7999999999998877665532334556788888888888774 22 677888899999999998874 3333
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..++|+|++++. +..+++++|++ .||.+
T Consensus 315 ~~~g~~~~~~~~~-------------~~~~~~~~l~~-~gi~~ 343 (375)
T 2eh6_A 315 KGRGLMLGLELER-------------ECKDYVLKALE-KGLLI 343 (375)
T ss_dssp EEETTEEEEECSS-------------CCHHHHHHHHH-TTEEC
T ss_pred eEEEEEEEEEEcC-------------cHHHHHHHHHH-CCCEE
Confidence 3345678998863 46789999886 48875
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-31 Score=263.53 Aligned_cols=296 Identities=16% Similarity=0.131 Sum_probs=220.2
Q ss_pred hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCC-------CCHHHHHHHHHHHHhhcCCCCCCCcEEEecC
Q 014172 92 QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNA-------GTLELRSAICHKLKEENGLSYTPDQILVSNG 163 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~-------G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G 163 (429)
..+++.|.|+.+.+. ++|+.+.+++.+.+.. ...|+ +.. +..+..+.+.+++.+.+| .++++|++|+|
T Consensus 18 ~~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g 93 (423)
T 3lvm_A 18 RAMKLPIYLDYSATT-PVDPRVAEKMMQFMTM-DGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG--ADPREIVFTSG 93 (423)
T ss_dssp --CCSSEECBTTTCC-CCCHHHHHHHTTSSST-TSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT--CCGGGEEEESS
T ss_pred cccCCCEeecCCCcC-CCCHHHHHHHHHHHhh-cccccCCCccccchhHHHHHHHHHHHHHHHHHcC--CCCCeEEEeCC
Confidence 356788999988876 6688999998887651 01221 111 112344444444444455 46789999999
Q ss_pred hHHHHHHHHHHhcC----CCCEEEEcCCCCCChHHHHH---HcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 164 AKQSILQAVLAVCS----PGDEVIIPAPFWVSYPEMAR---IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 164 ~~~al~~~l~~l~~----~gd~Vlv~~p~y~~~~~~~~---~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
+++++.++++++++ +||+|+++.|+|+++...+. ..|++++.++++. ++.+|+++|++++++++++|++++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~ 171 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMH 171 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCS
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCCCcEEEEEeC
Confidence 99999999998874 89999999999999887774 4599999999864 566899999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
|+||||.+++ +++|.++|++| |++||+||+|.... ....+.. .+.++++.||||.+|.+| +||+++
T Consensus 172 ~~nptG~~~~---l~~i~~l~~~~-~~~li~Dea~~~~~----~~~~~~~----~~~di~~~s~sK~~g~~g--~G~~~~ 237 (423)
T 3lvm_A 172 VNNEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSVGK----LPIDLSQ----LKVDLMSFSGHKIYGPKG--IGALYV 237 (423)
T ss_dssp BCTTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTTTT----SCCCTTT----SCCSEEEEESTTTTSCSS--CEEEEE
T ss_pred CCCCCccccC---HHHHHHHHHHc-CCEEEEEhhhhcCC----CCcChhh----cCCCEEEechHHhcCCCC--eEEEEE
Confidence 9999999999 88899999999 99999999987521 1111111 356699999999888666 899999
Q ss_pred CHHHHHHHHHHhh-------cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc-
Q 014172 317 PKHFVAACNKIQS-------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG- 388 (429)
Q Consensus 317 ~~~~~~~l~~~~~-------~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~- 388 (429)
+++.++.+..... ....+.+...+.++.+++.. ..+++++++++++++++++.+.|++++|+++..+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 314 (423)
T 3lvm_A 238 RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEH 314 (423)
T ss_dssp CBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTT
T ss_pred eccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccc
Confidence 8776655443321 22334566677776677765 355688999999999999999999998998876654
Q ss_pred --eEEEEEecCCccCCcccCCCCCCChHHHHHHHHH
Q 014172 389 --AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLD 422 (429)
Q Consensus 389 --~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~ 422 (429)
+.++++.++.. +..++.+.|.+
T Consensus 315 ~~~~~~~~~~~~~------------~~~~l~~~l~~ 338 (423)
T 3lvm_A 315 GAPNILNVSFNYV------------EGESLIMALKD 338 (423)
T ss_dssp BCTTEEEEEETTS------------CHHHHHHHTTT
T ss_pred cCCCeEEEEeCCC------------CHHHHHHHHhh
Confidence 23455555532 67788887754
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=259.04 Aligned_cols=297 Identities=16% Similarity=0.159 Sum_probs=219.4
Q ss_pred cCCCeEEcCCCCCCCC---ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDFD---TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~---~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|++.|.+... .++.+.+++.+.+.+.... ...+..+.++++++++.+.+| ++++++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~g----~~~v~~~~~gt~a~~ 107 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT--SRAFHSDQLGPWYEKVAKLTN----KEMVLPMNTGAEAVE 107 (392)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCC--CTTSEETTHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccc--ccccCCHHHHHHHHHHHHhcC----CCEEEEeCcHHHHHH
Confidence 4677999998875544 4789999999988653221 111223334444444444444 679999999999999
Q ss_pred HHHHHhcCC----------CCEEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCCCCHHHHHhhcc
Q 014172 170 QAVLAVCSP----------GDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 170 ~~l~~l~~~----------gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+++.+..+ ||.|+++.|+|+++...+...+.. +..++. .|+++|+++++
T Consensus 108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 180 (392)
T 3ruy_A 108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAIT 180 (392)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCC
T ss_pred HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhc
Confidence 999987644 689999999998876665544322 444443 28999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHH-HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNL-LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~-l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
+++++|++++|+||||.+++.++ +++|.++|++| |+++|+||+|.++.+.+... ..... +.... +.||||.++
T Consensus 181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~~~~g~~~-~~~~~-~~~~d---~~~~SK~l~ 254 (392)
T 3ruy_A 181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE-NVLFVADEIQTGLGRTGKVF-ACDWD-NVTPD---MYILGKALG 254 (392)
T ss_dssp TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTTTTTSSSS-GGGGG-TCCCS---EEEECGGGG
T ss_pred cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeechhCCCccccch-hhhcc-CCCCC---EEEEchhhh
Confidence 89999999999999999996665 99999999999 99999999998776655321 11111 11122 347899876
Q ss_pred ccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC--CCce
Q 014172 306 MTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVK 382 (429)
Q Consensus 306 ~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l--~g~~ 382 (429)
+| +|+||+++++++++.+.......+++.+.+++.++.++|+. .+. ++.++.++++++++.+.|+++ +.+.
T Consensus 255 -gG~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~----~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~ 328 (392)
T 3ruy_A 255 -GGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEV----LEE-EKLTERSLQLGEKLVGQLKEIDNPMIT 328 (392)
T ss_dssp -TTTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHH----HHH-TTHHHHHHHHHHHHHHHHTTCCCTTEE
T ss_pred -CChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHH----HHh-hhHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 56 99999999999988877666666778899999999999985 222 678888999999999999987 3466
Q ss_pred eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 383 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
...+.++|+ ++.++. +..+++++|++ .||.+.
T Consensus 329 ~~~~~g~~~-~~~~~~-------------~~~~l~~~l~~-~gi~v~ 360 (392)
T 3ruy_A 329 EVRGKGLFI-GIELNE-------------PARPYCEQLKA-AGLLCK 360 (392)
T ss_dssp EEEEETTEE-EEEESS-------------CSHHHHHHHHT-TTEECC
T ss_pred EEEeeeeEE-EEEEcc-------------hHHHHHHHHHH-CCcEEe
Confidence 666777664 455753 46789999885 498863
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-31 Score=254.88 Aligned_cols=292 Identities=19% Similarity=0.242 Sum_probs=211.3
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++|+|+.+.+.+ +++.+.+++.+... +...|++..+..+||++++++++ .+++++++|+++++.+++.++
T Consensus 4 ~~i~~~~~~~~~-p~~~~~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~gt~a~~~~~~~~ 73 (347)
T 1jg8_A 4 MMIDLRSDTVTK-PTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETFG--------KEAALFVPSGTMGNQVSIMAH 73 (347)
T ss_dssp -CEECSCGGGCC-CCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHH
T ss_pred eEEEeccccCCC-CCHHHHHHHhcCCC-CCcccCCChHHHHHHHHHHHHhC--------CceEEEecCcHHHHHHHHHHh
Confidence 579999999887 55678888765432 23468778888999999999873 246788888899999999999
Q ss_pred cCCCCEEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCc-cCCC
Q 014172 176 CSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPT-GSVY 245 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPt-G~~~ 245 (429)
+++||+|++++|+|.... ..++..|++++.+ .+ .++.+|+++|++++++ ++++|++++||||| |.++
T Consensus 74 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~ 150 (347)
T 1jg8_A 74 TQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV 150 (347)
T ss_dssp CCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC
T ss_pred cCCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccccccCCccC
Confidence 999999999999986532 3677889999988 43 2456899999999975 68999999999999 9999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCccc--ccCCCCCCccccCCCCCCceEEEeccChhcccccceee-EEEcCHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHI--IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHFVA 322 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G-~v~~~~~~~~ 322 (429)
+.+++++|+++|++| |++||+|++|... .+.+. +...+....+ .++.||||.++++ +| |+++++++++
T Consensus 151 ~~~~l~~i~~~a~~~-~~~li~D~a~~~~~~~~~~~---~~~~~~~~~d--~~~~s~sK~l~~~---~G~~~~~~~~~~~ 221 (347)
T 1jg8_A 151 PLENIKEICTIAKEH-GINVHIDGARIFNASIASGV---PVKEYAGYAD--SVMFCLSKGLCAP---VGSVVVGDRDFIE 221 (347)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEEETTHHHHHHHHCC---CHHHHHHTCS--EEEEESSSTTCCS---SCEEEEECHHHHH
T ss_pred cHHHHHHHHHHHHHC-CCEEEeehhhhhcchhhcCC---ChHHhccccc--EEEEecccccCCC---ceEEEEcCHHHHH
Confidence 999999999999999 9999999997532 12221 1111111123 3445899999743 57 5667888888
Q ss_pred HHHHHhhcccCCC--chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCCceEEEEEecCCc
Q 014172 323 ACNKIQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTY 399 (429)
Q Consensus 323 ~l~~~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~~~~~~~~l~~~ 399 (429)
.+...+..+..+. +...+.++..+++. ..+.++ + ..++++.+.+.|+++ |+++. .+..+.|+|++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~---~-~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~~ 293 (347)
T 1jg8_A 222 RARKARKMLGGGMRQAGVLAAAGIIALTK---MVDRLK---E-DHENARFLALKLKEI-GYSVNPEDVKTNMVILRTDNL 293 (347)
T ss_dssp HHHHHHHHHTCCCSSTHHHHHHHHHHHHH---SSTTHH---H-HHHHHHHHHHHHHHH-TCBCCGGGCCSSEEEEECTTS
T ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHHHH---HHHHHH---H-HHHHHHHHHHHHHhc-CceeccCCCcceEEEEEcccc
Confidence 8776655444333 44555666666654 122222 2 234678888888887 77652 344455699998731
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ .+..+++++|.++ ||.+
T Consensus 294 -~---------~~~~~~~~~l~~~-gi~v 311 (347)
T 1jg8_A 294 -K---------VNAHGFIEALRNS-GVLA 311 (347)
T ss_dssp -S---------SCHHHHHHHHHHH-TEEC
T ss_pred -c---------CCHHHHHHHHHHC-CCEE
Confidence 0 2688999999765 8876
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=254.18 Aligned_cols=286 Identities=11% Similarity=0.105 Sum_probs=215.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEE
Q 014172 105 PDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVII 184 (429)
Q Consensus 105 ~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv 184 (429)
.+.++|+++.+++.+.+.. .++ ....++.+.+.+++.+.+|.+.++++|++|+|+++++. ++..++++||+|++
T Consensus 9 gp~~~~~~v~~a~~~~~~~---~~~--~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~ 82 (384)
T 3zrp_A 9 GPTTIKEDVLVAGLENNVG---FTS--KEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILV 82 (384)
T ss_dssp SCSCCCHHHHHHTTCCSCC---TTS--HHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEE
T ss_pred CCCCCCHHHHHHhhccccc---ccc--HHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEE
Confidence 3455678888877654321 121 12244545555555555564333388999999999999 99999999999999
Q ss_pred cCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 185 PAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 185 ~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
++|+|.+ +...++..|++++.++++. ++.+|++++++++++ ++++|++++|+||||.+++ +++|.++|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~- 156 (384)
T 3zrp_A 83 VSNGVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREP---VKDVINKIRKY- 156 (384)
T ss_dssp ECSSHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECC---HHHHHHHHGGG-
T ss_pred ecCCcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECc---HHHHHHHHHhc-
Confidence 9999965 5566788999999999864 456899999999987 8999999999999999999 88999999999
Q ss_pred CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHH-------------HHHh
Q 014172 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------------NKIQ 328 (429)
Q Consensus 262 ~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l-------------~~~~ 328 (429)
|+++|+|++|..... ...+. ..+.++++.|+||.++ .+.++||+++++++++.+ ....
T Consensus 157 ~~~li~D~a~~~~~~----~~~~~----~~~~d~~~~s~~K~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (384)
T 3zrp_A 157 VELIVVDGVSSVGAE----EVKAE----EWNVDVYLTASQKALG-SAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWL 227 (384)
T ss_dssp EEEEEEECTTTTTTS----CCCTT----TTTCSEEEEETTSTTC-CCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHH
T ss_pred CCEEEEECcccccCc----ccccc----ccCCCEEEecCccccc-CCCceEEEEECHHHHHHhcCCCCCCcccccHHHHH
Confidence 999999999875321 11111 1356799999999885 345599999999988777 2222
Q ss_pred h---------ccc-CCCchHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCceeecCC----ceEEEE
Q 014172 329 S---------QFT-SGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLF 393 (429)
Q Consensus 329 ~---------~~~-~~~~~~~q~aa~~~l~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~----~~~~~~ 393 (429)
. ... .+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++..+. +++++|
T Consensus 228 ~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 303 (384)
T 3zrp_A 228 PVMRGAEEGKAAYFATPPVHVILQLAEAFRL---IEKEGIENRIKRHTMVASAIRAGLEAL-GLEIVARRPESYSNTVTG 303 (384)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSCSSGGGBCSSEEE
T ss_pred HHHHhhcccCCCcCCCCCHHHHHHHHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHHHC-CCeEccCcccccCccEEE
Confidence 1 111 24566666666666664 2333 7889999999999999999998 88887776 567788
Q ss_pred EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.++.. +..+++++|.++ ||.+
T Consensus 304 ~~~~~~------------~~~~~~~~l~~~-gi~v 325 (384)
T 3zrp_A 304 VILKVA------------DPQKVLAGTVNE-GVEF 325 (384)
T ss_dssp EECSSS------------CHHHHHHHHHTT-TCCC
T ss_pred EECCCC------------CHHHHHHHHHHC-CEEE
Confidence 998752 688999999877 8875
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=256.92 Aligned_cols=268 Identities=13% Similarity=0.179 Sum_probs=194.2
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHH---cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIR---EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~---~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
..++.|+|++.+|+.+.+++.+++. .....|....+..+..+++++++.+.+|. +++++++++++++..++++
T Consensus 23 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~----~~~i~~~sG~~a~~~~l~~ 98 (398)
T 2rfv_A 23 STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERG----EAGLATASGISAITTTLLT 98 (398)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTC----SEEEEESSHHHHHHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCC----CcEEEECCHHHHHHHHHHH
Confidence 4688999999887665555555443 11222322222233444444444444453 2566666677999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHH
Q 014172 175 VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
++++||+|+++.|+|+++...+ +..|.+++.++.+ |++++++.+++++++|++++|+||||.+++ +
T Consensus 99 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l 168 (398)
T 2rfv_A 99 LCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRPETKVVYIETPANPTLSLVD---I 168 (398)
T ss_dssp HCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCTTEEEEEEESSBTTTTBCCC---H
T ss_pred HhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCCCCeEEEEECCCCCCCcccC---H
Confidence 9999999999999999988776 7889999999862 899999999989999999999999999998 9
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee-eEEEcCHHHHH-HHHHHh
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQ 328 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~-~l~~~~ 328 (429)
++|.++|++| |+++|+||+|..+.+.. ++ . .+.++++.|+||.++.+|+|+ ||+++++++++ .+....
T Consensus 169 ~~i~~l~~~~-~~~li~De~~~~~~~~~----~~-~----~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~ 238 (398)
T 2rfv_A 169 ETVAGIAHQQ-GALLVVDNTFMSPYCQQ----PL-Q----LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGL 238 (398)
T ss_dssp HHHHHHHHHT-TCEEEEECTTTCTTTCC----GG-G----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHH
T ss_pred HHHHHHHHHc-CCEEEEECCCcccccCC----ch-h----hCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHH
Confidence 9999999999 99999999999765431 11 1 256799999999998899998 99999999887 566555
Q ss_pred hcc-cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--------------CCCceeecC----Cce
Q 014172 329 SQF-TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE--------------LEGVKMSEP----QGA 389 (429)
Q Consensus 329 ~~~-~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~--------------l~g~~~~~p----~~~ 389 (429)
..+ +.+.+.+.+.++.++++. ...++++. .++++.+.+.|++ +|++++..| .++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~----~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~ 311 (398)
T 2rfv_A 239 KDITGGCMSPFNAWLTLRGVKT---LGIRMERH----CENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGG 311 (398)
T ss_dssp HHTTCCCCCHHHHHHHHHHHTT---HHHHHHHH----HHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCS
T ss_pred HhCCCCCCCHHHHHHHHhhhhh---HHHHHHHH----HHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCce
Confidence 555 557888899998888875 34444443 3444444444443 344554443 455
Q ss_pred EEEEEecC
Q 014172 390 FYLFIDFS 397 (429)
Q Consensus 390 ~~~~~~l~ 397 (429)
+ ++++++
T Consensus 312 ~-~~~~~~ 318 (398)
T 2rfv_A 312 I-ISFEIA 318 (398)
T ss_dssp E-EEEEET
T ss_pred E-EEEEEc
Confidence 5 555886
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=254.82 Aligned_cols=281 Identities=14% Similarity=0.044 Sum_probs=211.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCC--CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vl 183 (429)
+.++|+.+.+++.+.+.. .+++ ..+..++|+++++++ | .++++|++|+|+++++..++++++++||+|+
T Consensus 9 p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~----g--~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl 79 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH---HRTEAAREVFLKARGLLREAF----R--TEGEVLILTGSGTLAMEALVKNLFAPGERVL 79 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC---TTSHHHHHHHHHHHHHHHHHH----T--CSSEEEEEESCHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCCHHHHHHhccCCCC---ccCHHHHHHHHHHHHHHHHHh----C--CCCceEEEcCchHHHHHHHHHhccCCCCeEE
Confidence 345678898888776532 1222 123466777777775 4 3568999999999999999999999999999
Q ss_pred EcCCCCCChH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 184 IPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 184 v~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
+++|+|+++. ..++..|++++.++++. ++.+|++++++ +++++|++++|+||||.+++ +++|.++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~ 151 (352)
T 1iug_A 80 VPVYGKFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---EGYAGLLLVHSETSTGALAD---LPALARAFKEKN 151 (352)
T ss_dssp EEECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---SSCSEEEEESEETTTTEECC---HHHHHHHHHHHC
T ss_pred EEeCCchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---cCCcEEEEEEecCCcceecC---HHHHHHHHHhhC
Confidence 9999999875 44566899999999864 35589988877 67899999999999999999 889999999973
Q ss_pred -CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH---------HH----HH
Q 014172 262 -RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA---------CN----KI 327 (429)
Q Consensus 262 -~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~---------l~----~~ 327 (429)
|++||+||+|.. +.....+.. .+.++++.|+||.++ .+.++||+++++++++. +. ..
T Consensus 152 ~~~~li~D~a~~~----~~~~~~~~~----~~~d~~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (352)
T 1iug_A 152 PEGLVGADMVTSL----LVGEVALEA----MGVDAAASGSQKGLM-CPPGLGFVALSPRALERLKPRGYYLDLARELKAQ 222 (352)
T ss_dssp TTCEEEEECTTTB----TTBCCCSGG----GTCSEEEEESSSTTC-CCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHH
T ss_pred CCCEEEEECCccc----cCcceeccc----cCeeEEEecCccccc-CCCceeEEEECHHHHHHhhCCCceeeHHHHHhhc
Confidence 699999999974 211112211 245688999999553 22348999999987654 22 11
Q ss_pred -hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC-ceEEEEEecCCccCCccc
Q 014172 328 -QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAE 405 (429)
Q Consensus 328 -~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~-~~~~~~~~l~~~~~~~~~ 405 (429)
......+++...+.++.++++. ..+++++++++++++++++.+.|+++ |+++..+. .++++|++++..
T Consensus 223 ~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~------ 292 (352)
T 1iug_A 223 KEGESAWTPAINLVLAVAAVLEE---VLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEG------ 292 (352)
T ss_dssp TTTCCSSCCCHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTT------
T ss_pred ccCCCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccccccCCeEEEEEcCCC------
Confidence 1223345677777777777765 23447889999999999999999998 89887774 666789998732
Q ss_pred CCCCCCChHHHHHHHHHhCCeec
Q 014172 406 GFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 406 ~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|.++ ||.+
T Consensus 293 -----~~~~~~~~~l~~~-gi~v 309 (352)
T 1iug_A 293 -----VPYARVKEAFAQR-GAVI 309 (352)
T ss_dssp -----CCHHHHHHHHHTT-TEEC
T ss_pred -----CCHHHHHHHHHHC-CEEE
Confidence 2678999998876 9876
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=267.62 Aligned_cols=312 Identities=11% Similarity=0.071 Sum_probs=221.1
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCC---CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~---~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
.|+.+|+++.|.+ +++ +|+.+.+++.+.+.... ..|.+..+..+|+++|++++. | . .+++|++|+|+++
T Consensus 39 ~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~-~-~~~~v~~~~g~~~ 113 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVP---G-D-FAKKTLLVTTGSE 113 (426)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSS---C-S-SCEEEEEESSHHH
T ss_pred CCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCC---c-c-cccEEEEeCchHH
Confidence 4667899988874 444 47889999999876432 246677788899999999863 3 1 3489999999999
Q ss_pred HHHHHHH---HhcCCCCEEEEcCCCCCChH-HHHHHcCCE-------------EEEecCCCC---CCCCCCHHHHHhhcc
Q 014172 167 SILQAVL---AVCSPGDEVIIPAPFWVSYP-EMARIADAT-------------PVILPTRIS---ENFLLDPKVLESKLT 226 (429)
Q Consensus 167 al~~~l~---~l~~~gd~Vlv~~p~y~~~~-~~~~~~g~~-------------~~~v~~~~~---~~~~~d~e~l~~~l~ 226 (429)
++..+++ .++++| .|++.+|+|+++. ..+...|.+ ++.++++.. .++.+|++.|+++++
T Consensus 114 a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~ 192 (426)
T 1sff_A 114 AVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFK 192 (426)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHH
Confidence 9999988 677777 8999999998755 466666654 667776421 134478999999886
Q ss_pred -----cCCcEEEE-cCCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 227 -----EKSRLLIL-CSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 227 -----~~~~~i~l-~~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
+++++|++ ++++| || .+++.+++++|.++|++| |++||+||+|.++.+.+.. ..+.. .+..+.+.|
T Consensus 193 ~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~-~~~~~----~~~~~di~s 265 (426)
T 1sff_A 193 NDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTL-FAMEQ----MGVAPDLTT 265 (426)
T ss_dssp HTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGG----TTSCCSEEE
T ss_pred hccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHc-CCEEEEechhhccCcccch-hhhhh----cCCCCCEEE
Confidence 45677766 56678 99 788999999999999999 9999999999987665421 11111 122233559
Q ss_pred cChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc--
Q 014172 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-- 377 (429)
Q Consensus 300 ~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-- 377 (429)
|||.++. |+|+||+++++++++.+.......+.+.+.++|.++.++|+. ..+ ....++++++++++.+.|++
T Consensus 266 ~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal~~---~~~--~~~~~~~~~~~~~l~~~l~~~~ 339 (426)
T 1sff_A 266 FAKSIAG-GFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKV---FEQ--ENLLQKANDLGQKLKDGLLAIA 339 (426)
T ss_dssp ECGGGGT-SSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHH---HHH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EcccccC-CCceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 999999999999887765433445566789999999888864 111 13455566667777666655
Q ss_pred --CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 --LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 --l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+...++. |+|+|++++...... .....+..+++++|+++ ||.+
T Consensus 340 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~-gi~v 387 (426)
T 1sff_A 340 EKHPEIGDVRGL-GAMIAIELFEDGDHN---KPDAKLTAEIVARARDK-GLIL 387 (426)
T ss_dssp HTCTTEEEEEEE-TTEEEEEEBGGGCTT---SBCHHHHHHHHHHHHHT-TEEC
T ss_pred HhCCCeEEEEEE-EEEEEEEEecCcccc---CCChHHHHHHHHHHHHC-CcEE
Confidence 3334444566 567899985310000 00001467899998876 9876
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=251.90 Aligned_cols=292 Identities=14% Similarity=0.108 Sum_probs=215.6
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-----CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-----~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
|.|+.+.+. ++|+.+.+++.+.+.+.. .+.. ..+..++.+.+.+++.+.+| .++++|++|+|+++++.+++
T Consensus 2 iyld~~~~~-~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~--~~~~~i~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 2 AYFDYTSAK-PVDERILEAMLPYMTESF-GNPSSVHSYGFKAREAVQEAREKVAKLVN--GGGGTVVFTSGATEANNLAI 77 (382)
T ss_dssp CBCBTTTCC-CCCHHHHHHHHHHHHTSC-CCTTCSSHHHHHHHHHHHHHHHHHHHHTT--CTTEEEEEESSHHHHHHHHH
T ss_pred EeecCCCcC-CCCHHHHHHHHHHHHhhc-CCCcccchHHHHHHHHHHHHHHHHHHHcC--CCcCeEEEECCchHHHHHHH
Confidence 344444433 457889999999886522 2211 11224555566666666666 46789999999999999999
Q ss_pred HHhc----CCCCEEEEcCCCCCChHHHHHH---cCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 173 LAVC----SPGDEVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 173 ~~l~----~~gd~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
++++ ++||+|+++.++|+++...+.. .|++++.++++. ++.+|+++|++++++++++|++++|+||||.++
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~ 155 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQ 155 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBC
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhccCceEEEEECCCCCceeeC
Confidence 9998 9999999999999998876554 699999999863 456899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
+ +++|.++|++| |+ ||+|++|... .....+.. .+.++++.|+||.+|++| +|+++++++. .+.
T Consensus 156 ~---~~~i~~l~~~~-~~-li~D~a~~~~----~~~~~~~~----~~~d~~~~s~~K~~g~~g--~g~~~~~~~~--~~~ 218 (382)
T 4hvk_A 156 P---VEEISEVLAGK-AA-LHIDATASVG----QIEVDVEK----IGADMLTISSNDIYGPKG--VGALWIRKEA--KLQ 218 (382)
T ss_dssp C---HHHHHHHHSSS-SE-EEEECTTTBT----TBCCCHHH----HTCSEEEEESGGGTSCTT--CEEEEEETTC--CCC
T ss_pred C---HHHHHHHHHHc-CE-EEEEhHHhcC----CCCCCchh----cCCCEEEEeHHHhcCCCc--eEEEEEcCcc--CcC
Confidence 9 88999999999 99 9999998752 11112211 245699999999887666 6777665543 111
Q ss_pred HH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc---eEEEEEe
Q 014172 326 KI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYLFID 395 (429)
Q Consensus 326 ~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~---~~~~~~~ 395 (429)
.. .......++...+.++.+++.. ..+++++.+++++++++++.+.|++++|+++..+.+ +.++++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T 4hvk_A 219 PVILGGGQENGLRSGSENVPSIVGFGKAAEI---TAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVR 295 (382)
T ss_dssp CSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEE
T ss_pred cccccCCCcCccccCCcCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEE
Confidence 11 0111233566777777777764 356788999999999999999999998998876654 3356677
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.. +..++.+.|.++ ||.+
T Consensus 296 ~~~~------------~~~~~~~~l~~~-gi~v 315 (382)
T 4hvk_A 296 FSYI------------EGESIVLSLDMA-GIQA 315 (382)
T ss_dssp ETTC------------CHHHHHHHHHHT-TCBC
T ss_pred ECCC------------CHHHHHHHHHHC-CEEE
Confidence 7642 678899888665 8876
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=253.26 Aligned_cols=293 Identities=13% Similarity=0.133 Sum_probs=222.5
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC---CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN---AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~---~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
+++|+.| | ..+|+++.+++.+.+ ..+.+. .+..++|++++++++ .+.+++++++|+|+++++..+++
T Consensus 5 ~~~~~~g-p-~~~~~~v~~a~~~~~----~~~~~~~~~~~~~~l~~~la~~~g----~~~~~~~v~~~~g~t~a~~~~~~ 74 (366)
T 1m32_A 5 YLLLTPG-P-LTTSRTVKEAMLFDS----CTWDDDYNIGVVEQIRQQLTALAT----ASEGYTSVLLQGSGSYAVEAVLG 74 (366)
T ss_dssp CEECSSS-S-CCCCHHHHHTTCCCC----CTTSHHHHTTTHHHHHHHHHHHHC----SSSSEEEEEEESCHHHHHHHHHH
T ss_pred cccccCC-C-cCCCHHHHHHHhhhh----cCCCHHHHHHHHHHHHHHHHHHhC----CCCcCcEEEEecChHHHHHHHHH
Confidence 6899999 4 457888988877642 122221 677899999999874 11234589999999999999999
Q ss_pred HhcCCCCEEEEcC-CCCCC-hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc--CCcEEEEcCCCCCccCCCCHHH
Q 014172 174 AVCSPGDEVIIPA-PFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTE--KSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 174 ~l~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~--~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
+++++||+|++.+ ++|+. +...++..|++++.++++. ++.+|++++++++++ ++++|++++|+||||.+++
T Consensus 75 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~--- 149 (366)
T 1m32_A 75 SALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP--- 149 (366)
T ss_dssp HSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---
T ss_pred HhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecC---
Confidence 9999999988776 66654 6677888999999999863 456899999999975 5889999999999999999
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh-
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ- 328 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~- 328 (429)
+++|.++|++| |+++|+||+|..... ...+ .. .+.++++.|+||.++ .+.++||+++++++++.+....
T Consensus 150 l~~i~~l~~~~-~~~li~Dea~~~~~~----~~~~---~~-~~~di~~~s~~K~~~-~~~g~G~~~~~~~~~~~~~~~~~ 219 (366)
T 1m32_A 150 IDEVGALAHRY-GKTYIVDAMSSFGGI----PMDI---AA-LHIDYLISSANKCIQ-GVPGFAFVIAREQKLAACKGHSR 219 (366)
T ss_dssp HHHHHHHHHHH-TCEEEEECTTTTTTS----CCCT---TT-TTCSEEEEESSSTTC-CCSSEEEEEEEHHHHTTCTTCCS
T ss_pred HHHHHHHHHHc-CCEEEEECCccccCc----Cccc---cc-cCccEEEecCccccc-CCCceEEEEECHHHHHhhcCCCC
Confidence 88999999999 999999999985321 1121 11 346799999999874 3345799999998876654310
Q ss_pred -----------------hcccCCCchHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHHHHHhccCCCceeecC---
Q 014172 329 -----------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSEP--- 386 (429)
Q Consensus 329 -----------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~--~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p--- 386 (429)
.....+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~ 295 (366)
T 1m32_A 220 SLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE---LAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDEL 295 (366)
T ss_dssp CSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGG
T ss_pred CccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH---HHHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCchh
Confidence 011245677777777778775 3344 6788999999999999999988 8877654
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++++|++++...+ .+..+++++|.++ ||.+
T Consensus 296 ~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-gi~v 327 (366)
T 1m32_A 296 HSPIITAFYSPEDPQ---------YRFSEFYRRLKEQ-GFVI 327 (366)
T ss_dssp BCSSEEEEECCCCTT---------CCHHHHHHHHHHT-TEEC
T ss_pred cCceEEEEEcCccCC---------CCHHHHHHHHHHC-CEEE
Confidence 467789999874100 2678999998877 8876
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=257.42 Aligned_cols=300 Identities=13% Similarity=0.088 Sum_probs=221.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHc-CCCCCCCCC---CCHH--HHHHHH-HHHHhhcCCCCCCCcEEEecChHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTRYTPNA---GTLE--LRSAIC-HKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~-~~~~Y~~~~---G~~~--lr~~ia-~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
.+.|+|..|.+++ |+.+.+++.+.+.+ ...+|+... |.+. ++++++ +++.+.+|. ++++|++++|+ ++
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~--~~~~i~~~sGt-~a 97 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGA--AWANVQPHSGS-QA 97 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSHH-HH
T ss_pred hcceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCC--CcceEEecchH-HH
Confidence 4689999999887 88999999988764 334564332 5553 444433 566666674 44556667765 59
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCCh---HHHHHHcCC--EEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCc
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSY---PEMARIADA--TPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPT 241 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPt 241 (429)
+..++.+++++||+|++++|+|.++ ...++..|. .++.+++++ +++.+|++.+++.+++ ++++|++++|+||
T Consensus 98 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~- 175 (407)
T 2dkj_A 98 NMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEHRPKVIVAGASAYP- 175 (407)
T ss_dssp HHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHHCCSEEEECCSSCC-
T ss_pred HHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhcCCeEEEEeccccC-
Confidence 9999999999999999999999988 345556666 455554432 3577999999999975 8999999999997
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HH
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KH 319 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~ 319 (429)
.+.+ +++|.++|++| |+++|+||+|.. +.+.+... +. + ...++++.||||.+ +|+|+||++++ ++
T Consensus 176 -~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~-~~--~---~~~di~~~s~sK~l--~g~~~G~~~~~~~~ 242 (407)
T 2dkj_A 176 -RFWD---FKAFREIADEV-GAYLVVDMAHFAGLVAAGLHP-NP--L---PYAHVVTSTTHKTL--RGPRGGLILSNDPE 242 (407)
T ss_dssp -SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTCSC-CC--T---TTCSEEEEESSGGG--CCCSCEEEEESCHH
T ss_pred -CCCC---HHHHHHHHHHc-CCEEEEEccccccccccCccC-Cc--c---ccccEEEEeccccC--CCCCceEEEECCHH
Confidence 6667 89999999999 999999999997 55444221 11 1 12568999999955 68999999999 89
Q ss_pred HHHHHHHHhhcccCCCchHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecC
Q 014172 320 FVAACNKIQSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~q~-aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~ 397 (429)
+++.+......+..+.+...+. ++.++++.. ..+++++++++++++++++.+.|+++ |+++.. +..++|+|++++
T Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 319 (407)
T 2dkj_A 243 LGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEELARR-GYRIVTGGTDNHLFLVDLR 319 (407)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHHHhhhcccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHhC-CceeecCCCCceEEEEECc
Confidence 9998887665554444444333 555666541 13678899999999999999999998 888775 456778999987
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.. + .+..++.+.|.+ +||.+
T Consensus 320 ~~-~---------~~~~~~~~~l~~-~gi~v 339 (407)
T 2dkj_A 320 PK-G---------LTGKEAEERLDA-VGITV 339 (407)
T ss_dssp GG-T---------CCHHHHHHHHHH-TTEEC
T ss_pred cc-C---------CCHHHHHHHHHH-cCcee
Confidence 42 0 257788888754 59875
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=263.48 Aligned_cols=333 Identities=16% Similarity=0.167 Sum_probs=235.0
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~------~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia 142 (429)
..|++.++++.+..+.+++..+...|.++++|..|++ ++.+ +.+.+++.+.+..+...|++..+..+|+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la 86 (467)
T 1ax4_A 8 PFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAK 86 (467)
T ss_dssp SEEEEEEEECCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHH
T ss_pred hhhhceeecccccchhHHHHHHHhcCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhhcccccccCccHHHHHHHHH
Confidence 3566777777776777777777777877888887765 2222 56777777777666667888788899999999
Q ss_pred HHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC----CCCE---EEEcCCCCCChHHHHHHcCCEEEEecCCCC----
Q 014172 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS----PGDE---VIIPAPFWVSYPEMARIADATPVILPTRIS---- 211 (429)
Q Consensus 143 ~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~----~gd~---Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~---- 211 (429)
+++. .++|++|+|+++++..++.++++ +||+ |+++.+.|..+...+...|++++.++....
T Consensus 87 ~~~~--------~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 158 (467)
T 1ax4_A 87 ELFN--------YDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSE 158 (467)
T ss_dssp HHHC--------CCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTT
T ss_pred HHcC--------CCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceeccccccccccc
Confidence 9973 36899999999999999999998 9998 999877777778888999999988765321
Q ss_pred ----CCCCCCHHHHHhhccc----CCcEEEEcCCCCCc-cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc--c------
Q 014172 212 ----ENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH--I------ 274 (429)
Q Consensus 212 ----~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPt-G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~--~------ 274 (429)
.++.+|+++|++++++ ++++|++++||||| |.+++.+++++|.++|++| |+++|+|+++.. .
T Consensus 159 ~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~-gi~li~De~~~~~~~~~~~~~ 237 (467)
T 1ax4_A 159 TYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQH-GIFVVMDSARFCENAYFIKAR 237 (467)
T ss_dssp SCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHH
T ss_pred ccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHc-CCEEEEEchhhhhcchhcccc
Confidence 1346899999999974 68999999999999 8999999999999999999 999999998653 1
Q ss_pred --ccCCCCCCccccCC----CCCCceEEEeccChhcccc-cceeeEEEcC-H-HHHHHHHHHhhcc----cC-CCchHHH
Q 014172 275 --IYAPATHTSFASLP----GMWERTLTVNGFSKAFAMT-GWRLGYIAGP-K-HFVAACNKIQSQF----TS-GASSISQ 340 (429)
Q Consensus 275 --~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~~~~-G~R~G~v~~~-~-~~~~~l~~~~~~~----~~-~~~~~~q 340 (429)
.+.+. ++..+. ...+ +++.|+||.+|++ | ||++++ + ++++.+......+ .. ..+...+
T Consensus 238 ~~~~~~~---~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (467)
T 1ax4_A 238 DPKYKNA---TIKEVIFDMYKYAD--ALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDM 309 (467)
T ss_dssp CGGGTTC---CHHHHHHHHGGGCS--EEEEETTSTTCCSSC---EEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHH
T ss_pred ccccCCC---chhhhhhhhccccc--eEEEeccccCCCCcc---eEEEeCCHHHHHHHHHhhccccccccccCCccchHH
Confidence 12221 222211 1112 5678999999866 4 777777 6 8888776553321 11 2233333
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHH
Q 014172 341 KAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420 (429)
Q Consensus 341 ~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 420 (429)
.++..+++... .++.+ +...++++++.+.|++ +|+++..|.+++++|+++....... .. ...+..+++++|
T Consensus 310 ~a~~~~l~~~~-~~~~~----~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~l~~~L 380 (467)
T 1ax4_A 310 AAMVQGLEEGT-EEEYL----HYRIGQVKYLGDRLRE-AGIPIQYPTGGHAVFVDCKKLVPQI-PG--DQFPAQAVINAL 380 (467)
T ss_dssp HHHHHHHHHTT-CHHHH----HHHHHHHHHHHHHHHH-TTCCBCSSCCSSEEEEESTTTCTTS-CG--GGCHHHHHHHHH
T ss_pred HHHHHHHHHhh-hhhHH----HHHHHHHHHHHHHHHh-CCCCcccCCCceEEEEehhhhcccc-cc--CCCCHHHHHHHH
Confidence 33333454311 11222 3334667888888887 4888878899999999943210000 00 002467899999
Q ss_pred HHhCCeec
Q 014172 421 LDKAQVLL 428 (429)
Q Consensus 421 l~~~gV~v 428 (429)
+++.||.+
T Consensus 381 ~~~~gv~v 388 (467)
T 1ax4_A 381 YLESGVRA 388 (467)
T ss_dssp HHHHCEEC
T ss_pred HHhcCcee
Confidence 66669986
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=256.08 Aligned_cols=297 Identities=12% Similarity=0.112 Sum_probs=218.6
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|++.|. .+++ .|+++.+++.+.+..... ++. ....++++.+++.+.+.+| .++|++|+|+++++.
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~gg~~a~~ 111 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIH-CSN-LFWNRPQMELAELLSKNTF----GGKVFFANTGTEANE 111 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSC-CCT-TSEEHHHHHHHHHHHHTTT----SCEEEEESSHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhccc-Ccc-ccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 356789998873 3333 478999999998875322 211 1123566666666666655 479999999999999
Q ss_pred HHHHHhcC------C-CCEEEEcCCCCCC-hHHHHHHcCCE------------EEEecCCCCCCCCCCHHHHHhhcccCC
Q 014172 170 QAVLAVCS------P-GDEVIIPAPFWVS-YPEMARIADAT------------PVILPTRISENFLLDPKVLESKLTEKS 229 (429)
Q Consensus 170 ~~l~~l~~------~-gd~Vlv~~p~y~~-~~~~~~~~g~~------------~~~v~~~~~~~~~~d~e~l~~~l~~~~ 229 (429)
.+++++.. + ++.|++.+|+|.+ +...++..|.+ ++.++. .|+++|++++++++
T Consensus 112 ~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~~ 184 (397)
T 2ord_A 112 AAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSEDV 184 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTTE
T ss_pred HHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhcCe
Confidence 99998863 5 4789999999965 44577788876 667764 28999999999899
Q ss_pred cEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc
Q 014172 230 RLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 230 ~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 308 (429)
++|++++|+||||. +++.+++++|.++|++| |+++|+||+|.++.+.+. ..++..+....+ +.||||.++ +|
T Consensus 185 ~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~-~~~~~~~~~~~d----~~s~sK~~~-~G 257 (397)
T 2ord_A 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEY-DALLVFDEVQCGMGRTGK-LFAYQKYGVVPD----VLTTAKGLG-GG 257 (397)
T ss_dssp EEEEECSEECTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSHHHHHTCCCS----EEEECGGGG-TT
T ss_pred EEEEEecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCcc-chhhhhhCCCCC----eeeeccccC-CC
Confidence 99999999999999 99999999999999999 999999999998766543 222222221112 238899999 99
Q ss_pred ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCceee
Q 014172 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKMS 384 (429)
Q Consensus 309 ~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g~~~~ 384 (429)
+|+||++++++++ .+.......+++.+.+.+.++.++|+.. .+ ++++++++++++++.+.|+++ +.+...
T Consensus 258 ~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 331 (397)
T 2ord_A 258 VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKEL---TK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADV 331 (397)
T ss_dssp SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHH---TS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHH---Hh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 9999999998876 5543233445567899999999888751 22 456788888888888888764 222223
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+ .|+|++++.. .+..+++++|+++ ||.+
T Consensus 332 ~~~g-~~~~~~~~~~-----------~~~~~l~~~l~~~-gi~v 362 (397)
T 2ord_A 332 RGMG-LMIGIQFREE-----------VSNREVATKCFEN-KLLV 362 (397)
T ss_dssp EEET-TEEEEEECTT-----------SCHHHHHHHHHHT-TEEC
T ss_pred EEEe-EEEEEEECCh-----------HHHHHHHHHHHHC-CCEE
Confidence 4444 5577888642 2578999999874 9876
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-30 Score=253.41 Aligned_cols=286 Identities=14% Similarity=0.140 Sum_probs=219.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv 184 (429)
+.++++.+.+++.+.+ ...|. ....++.+.+.+++.+.+|. +.+ .|++|+|+++++..++.+++++||+|++
T Consensus 21 p~~~~~~v~~a~~~~~---~~~~~--~~~~~~~~~~~~~la~~~~~--~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~ 93 (411)
T 3nnk_A 21 PINADPRVLRAMSSQL---IGQYD--PAMTHYMNEVMALYRGVFRT--ENRWTMLVDGTSRAGIEAILVSAIRPGDKVLV 93 (411)
T ss_dssp CCCCCHHHHHHHTSCC---CCTTC--HHHHHHHHHHHHHHHHHHTC--CCSEEEEEESCHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCCCHHHHHHhhccc---ccccc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEECCCcHHHHHHHHHHhcCCCCEEEE
Confidence 4556788887776432 12232 22345556666666666664 344 4889999999999999999999999999
Q ss_pred cCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 185 PAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 185 ~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
+.|+|.+ +...++..|++++.+|++ .++.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|++|
T Consensus 94 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~- 167 (411)
T 3nnk_A 94 PVFGRFGHLLCEIARRCRAEVHTIEVP--WGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP---LAELGEICRRY- 167 (411)
T ss_dssp EECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-
T ss_pred ecCCchHHHHHHHHHHcCCeEEEEecC--CCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc---HHHHHHHHHHc-
Confidence 9999987 888999999999999985 3466899999999986 8999999999999999999 88999999999
Q ss_pred CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh-------------
Q 014172 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------- 328 (429)
Q Consensus 262 ~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~------------- 328 (429)
|+++|+||+|.... ....+. ..+.++++.|++|.++ .+.++||+++++++++.+....
T Consensus 168 ~~~li~Dea~~~~~----~~~~~~----~~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~g 238 (411)
T 3nnk_A 168 DALFYTDATASLGG----NPLETD----VWGLDAVSAGMQKCLG-GPSGTSPITLSARMEEAIRRRKCVEEGIRTDAHRD 238 (411)
T ss_dssp TCEEEEECTTTBTT----BCCCTT----TTTCSEEECCSTTTTC-CCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTCCC
T ss_pred CCEEEEECCcccCC----cccchh----ccCCcEEEecCccccC-CCCceEEEEECHHHHHHHhhccccccccccccccc
Confidence 99999999987521 111111 1356699999999854 4456899999999998887543
Q ss_pred -----------------------hcccCCCchHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 329 -----------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 329 -----------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
.....+.+...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++.
T Consensus 239 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~ 314 (411)
T 3nnk_A 239 GDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARL---ILQEGLDYGIARHKLHGDALVKGIQAM-GLETF 314 (411)
T ss_dssp CSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBC
T ss_pred ccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeC
Confidence 012234566777777777765 3444 7889999999999999999998 88877
Q ss_pred cCCc---eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+ ++++++.++.. .+..+++++|++++||.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~l~~~~gi~v 350 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQG-----------INGDQARKLMLEDFGIEI 350 (411)
T ss_dssp SCGGGBCSSEEEEECCTT-----------CCHHHHHHHHHHHHSEEE
T ss_pred CCcccccccEEEEECCCC-----------CCHHHHHHHHHHhcCeEE
Confidence 6554 66788888742 368899999998889875
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-30 Score=248.93 Aligned_cols=292 Identities=12% Similarity=0.055 Sum_probs=211.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
+++|+|+.+.+ ..+++++.+++.+.+......|+ ..++++++++++.+.+| .+++|++|+|+++++..++++
T Consensus 7 ~~~id~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~----~~~~~~~l~~~la~~~g---~~~~v~~~~~gt~a~~~al~~ 78 (356)
T 1v72_A 7 PPALGFSSDNI-AGASPEVAQALVKHSSGQAGPYG----TDELTAQVKRKFCEIFE---RDVEVFLVPTGTAANALCLSA 78 (356)
T ss_dssp CCCCBCSCGGG-CCCCHHHHHHHHHTTSSCCCSTT----CSHHHHHHHHHHHHHHT---SCCEEEEESCHHHHHHHHHHT
T ss_pred CceEeeccCCc-cCCCHHHHHHHHhhccCcccccc----cchHHHHHHHHHHHHhC---CCCcEEEeCCccHHHHHHHHH
Confidence 46899998755 45678899998876522123343 34556666666666666 245699999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChHHH--HHHc--CCEEEEecCCCCCCCCCCHHHHHh-hccc-------CCcEEEEcCCCCCcc
Q 014172 175 VCSPGDEVIIPAPFWVSYPEM--ARIA--DATPVILPTRISENFLLDPKVLES-KLTE-------KSRLLILCSPSNPTG 242 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~v~~~~~~~~~~d~e~l~~-~l~~-------~~~~i~l~~p~NPtG 242 (429)
++++||.|+++.|+|..+... +... |++++.+|.+ ++.+|+++|++ ++++ ++++|++++|+| ||
T Consensus 79 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG 154 (356)
T 1v72_A 79 MTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VG 154 (356)
T ss_dssp SCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TS
T ss_pred hcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CC
Confidence 999999999999998776554 6666 9999999874 35689999999 8875 688999999987 99
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc--cCCCCCCccccCCCCCCceEEEeccChhcccccceee--EEEcCH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII--YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLG--YIAGPK 318 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G--~v~~~~ 318 (429)
.+++.+++++|.++|++| |+++|+|++|..+. +.+... ....+.. +..+++.|+||. + +|+| |+++++
T Consensus 155 ~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~~~~~-~~~~~~~--~~d~~~~s~sK~-g---~~~G~g~~~~~~ 226 (356)
T 1v72_A 155 SIYTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLGCSP-AEMTWKA--GVDALSFGATKN-G---VLAAEAIVLFNT 226 (356)
T ss_dssp CCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHTCCT-TTTTGGG--TCCEEEECCGGG-T---CSSCEEEEESSG
T ss_pred ccCCHHHHHHHHHHHHHc-CCeEEEEchhhHhHhccCCCCH-HHhhhhh--cCCEEEEecccC-C---CcCccEEEEECH
Confidence 999999999999999999 99999999998642 222211 1111111 222556699998 4 3555 888899
Q ss_pred HHHHHHHHHhhcccC-CC-chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEec
Q 014172 319 HFVAACNKIQSQFTS-GA-SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 319 ~~~~~l~~~~~~~~~-~~-~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l 396 (429)
++++.+.......+. .. ....+..+...+.. +...++.++++++++++.+.|++++|+++..|.+++|+|+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~ 301 (356)
T 1v72_A 227 SLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD-----DLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL 301 (356)
T ss_dssp GGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTST-----THHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEE
T ss_pred HHHhhHHHHhhccCchhhhHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHhhCCCcEEccCCCccEEEEEc
Confidence 998887665432221 11 22333323333332 234456777888999999999988899987788888899987
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ .+++++|.++ ||.+
T Consensus 302 ~----------------~~~~~~l~~~-gi~v 316 (356)
T 1v72_A 302 D----------------SAMIDALLKA-GFGF 316 (356)
T ss_dssp C----------------HHHHHHHHHT-TCBC
T ss_pred C----------------HHHHHHHHhc-CeEE
Confidence 4 2788888655 8875
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=249.65 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=217.5
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEE-EecChHHHHHHHHHHhcCCCCEEEE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL-VSNGAKQSILQAVLAVCSPGDEVII 184 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~-~t~G~~~al~~~l~~l~~~gd~Vlv 184 (429)
+.+.++.+.+++.+. ....|+ ....++.+.+.+++.+.+|. ++++++ +++|+++++..++++++++||+|++
T Consensus 19 p~~~~~~v~~a~~~~---~~~~~~--~~~~~~~~~l~~~la~~~g~--~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~ 91 (416)
T 3isl_A 19 PVEVDPRVLRVMSTP---VVGQFD--PAFTGIMNETMEMLRELFQT--KNRWAYPIDGTSRAGIEAVLASVIEPEDDVLI 91 (416)
T ss_dssp SCCCCHHHHHHTTSC---CCCTTS--HHHHHHHHHHHHHHHHHTTC--CCSEEEEEESCHHHHHHHHHHHHCCTTCEEEE
T ss_pred CcCcCHHHHHHhccc---CCCCcc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEecCcHHHHHHHHHHHhcCCCCEEEE
Confidence 344566776665441 122332 22345566666666666673 455555 8889999999999999999999999
Q ss_pred cCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC
Q 014172 185 PAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP 261 (429)
Q Consensus 185 ~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~ 261 (429)
++|+|.+ +...++..|++++.++++.+ +.+|+++++++++ +++++|++++|+||||.+++ +++|.++|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~- 165 (416)
T 3isl_A 92 PIYGRFGYLLTEIAERYGANVHMLECEWG--TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHP---LKAIGEACRTE- 165 (416)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CHHHHHHHHHT-
T ss_pred ecCCcccHHHHHHHHhcCCeeEEEecCCC--CCCCHHHHHHHHhhCCCcEEEEEccCCCCceecC---HHHHHHHHHHc-
Confidence 9999987 77788999999999998643 4689999999998 68999999999999999999 88999999999
Q ss_pred CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh-------------
Q 014172 262 RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------------- 328 (429)
Q Consensus 262 ~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~------------- 328 (429)
|+++|+|++|.... ....+. ..+.++++.|++|.++ .+.++||+++++++++.+....
T Consensus 166 ~~~li~D~a~~~~~----~~~~~~----~~~~d~~~~s~~K~l~-g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~ 236 (416)
T 3isl_A 166 DALFIVDAVATIGG----CEVKVD----EWKIDAAIGGTQKCLS-VPSGMAPITYNERVADVIAARKKVERGIATQADRA 236 (416)
T ss_dssp TCEEEEECTTTTTT----SCCCTT----TTTCSEEECCSSSTTC-CCSSEEEEEECHHHHHHHHTC--------------
T ss_pred CCEEEEECCccccC----CCcchh----hcCCCEEEecCccccC-CCCCeEEEEECHHHHHHhhccccccccccccccch
Confidence 99999999987422 111111 1346699999999754 4456899999999988876321
Q ss_pred -------------------------hcccCCCchHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 329 -------------------------SQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 329 -------------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.....+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |++
T Consensus 237 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~ 312 (416)
T 3isl_A 237 ALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRL---VLEEGLETRFERHRHHEAALAAGIKAM-GLR 312 (416)
T ss_dssp ----CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC
T ss_pred hccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE
Confidence 111234567777777777765 3455 8899999999999999999997 888
Q ss_pred eecCCc---eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 383 MSEPQG---AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 383 ~~~p~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..+.+ ++++++.++.. .+..+++++|++++||.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~~gi~v 350 (416)
T 3isl_A 313 LFGDDSCKMPVVTCVEIPGG-----------IDGESVRDMLLAQFGIEI 350 (416)
T ss_dssp BCSCGGGBCTTEEEEECCTT-----------CCHHHHHHHHHHHHCEEC
T ss_pred eccCccccCCcEEEEeCCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 876654 56688888642 368899999998878876
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=251.89 Aligned_cols=282 Identities=16% Similarity=0.149 Sum_probs=212.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vl 183 (429)
+.++|+.+.+++.+.+.. +.| +. .+..++++++++++ |.+.++++|++|+|+++++..+++++++ |+|+
T Consensus 8 p~~~~~~v~~a~~~~~~~--~~~-~~~~~~~~~l~~~la~~~----g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl 78 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRG--HLD-PEVLRVNRAIQERLAALF----DPGEGALVAALAGSGSLGMEAGLANLDR--GPVL 78 (353)
T ss_dssp SCCCCHHHHGGGGSCCCC--TTC-HHHHHHHHHHHHHHHHHH----CCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEE
T ss_pred CCCCCHHHHHHHhccccc--ccC-HHHHHHHHHHHHHHHHHh----CCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEE
Confidence 455678888888766532 222 21 23455666666654 5444568899999999999999999886 8999
Q ss_pred EcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhC
Q 014172 184 IPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260 (429)
Q Consensus 184 v~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~ 260 (429)
+++|.|+++ ...++..|++++.++++. ++.+|++.+++.+++ ++++|++++|+||||.+++ +++|.++|++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~ 153 (353)
T 2yrr_A 79 VLVNGAFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRRRYRMVALVHGETSTGVLNP---AEAIGALAKEA 153 (353)
T ss_dssp EEECSHHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHHH
T ss_pred EEcCCCchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecC---HHHHHHHHHHc
Confidence 999998875 456678899999999864 456899999999988 8999999999999999999 88999999999
Q ss_pred CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHH-------------
Q 014172 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNK------------- 326 (429)
Q Consensus 261 ~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~------------- 326 (429)
|+++|+|++|+.. ....++..+ +..+++.|++|.+ +++| +||+++++++++.+..
T Consensus 154 -~~~li~D~a~~~~----~~~~~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 222 (353)
T 2yrr_A 154 -GALFFLDAVTTLG----MLPFSMRAM----GVDYAFTGSQKCLSAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAE 222 (353)
T ss_dssp -TCEEEEECTTTTT----TSCCCHHHH----TCSEEECCTTSTTCCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHH
T ss_pred -CCeEEEEcCcccc----ccccccccc----CceEEEecCcccccCCCc--eEEEEECHHHHHHhccCCCccccHHHHhh
Confidence 9999999999642 112222222 3458899999965 4455 7999999998876531
Q ss_pred H--hhcccCCCchHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHhccCCCceeecCC--ceEEEEEecCCccC
Q 014172 327 I--QSQFTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSFGELEGVKMSEPQ--GAFYLFIDFSTYYG 401 (429)
Q Consensus 327 ~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~--~~~~~~~~l~~~~~ 401 (429)
. ......+++...+.++.++++. ..++ +++++++++++++++.+.|+++ |+++..+. +++++|++++..
T Consensus 223 ~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-- 296 (353)
T 2yrr_A 223 HWERGGYHHTTPVLLHYALLEALDL---VLEEGVAARERRAREVYAWVLEELKAR-GFRPYPKASPLPTVLVVRPPEG-- 296 (353)
T ss_dssp HHTTCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSSBCTTEEEEECCTT--
T ss_pred hhhcCCCCCCCCHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHC-CCccccCccCCCeEEEEECCCC--
Confidence 0 1222335677777777777764 2333 7788999999999999999998 88887654 677778888632
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++++|.++ ||.+
T Consensus 297 ---------~~~~~~~~~l~~~-gi~v 313 (353)
T 2yrr_A 297 ---------VDADRLVRALYAE-GVAV 313 (353)
T ss_dssp ---------CCHHHHHHHHHHT-TEEC
T ss_pred ---------CCHHHHHHHHHHC-CEEE
Confidence 2678999998877 9876
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=252.08 Aligned_cols=322 Identities=12% Similarity=0.074 Sum_probs=211.2
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|++.| .+.++. |+++.+++.+.+.+. ..|++..+..++++++++++.+.++ .++++|++|+|+++++.
T Consensus 27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~ea~~ 103 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARL-PFVHGSQFSSDVLEEYAGRLARFVG--LPTFRFWAVSGGSEATE 103 (430)
T ss_dssp TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC-CCCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhc-ccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCcHHHHHH
Confidence 46678999987 455555 899999999988763 3454556677889999999988877 45679999999999999
Q ss_pred HHHHHhc--------CCCCEEEEcCCCCCChHHHHHHcCCE---------------EEEecCCCC-CCCCCCHHHHHhhc
Q 014172 170 QAVLAVC--------SPGDEVIIPAPFWVSYPEMARIADAT---------------PVILPTRIS-ENFLLDPKVLESKL 225 (429)
Q Consensus 170 ~~l~~l~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~---------------~~~v~~~~~-~~~~~d~e~l~~~l 225 (429)
.++++++ ..+|.|++.+|+|+++...+...+.. +..++.+.. .....|++.|++++
T Consensus 104 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l 183 (430)
T 3i4j_A 104 SAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALL 183 (430)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHH
Confidence 9999886 34789999999999988765554442 222222100 00113568888888
Q ss_pred c----cCCcEEEEcCCCC-CccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 226 T----EKSRLLILCSPSN-PTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 226 ~----~~~~~i~l~~p~N-PtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
+ +++++|+++.++| ++|. +.+.+++++|.++|++| |+++|+||+|.++.+.+. ...+..+++.... +.+
T Consensus 184 ~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~~~~g~-~~~~~~~~~~~~d---i~t 258 (430)
T 3i4j_A 184 EREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEA-GIIFIADEVMSGMGRCGS-PLALSRWSGVTPD---IAV 258 (430)
T ss_dssp HHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSS-SSGGGGTTTCCCS---EEE
T ss_pred HhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHc-CCEEEEechhhCCCcccc-hhhhhhhcCCCCc---EEE
Confidence 6 3344444545566 8886 66888899999999999 999999999998766553 2222222011122 446
Q ss_pred cChhccccc-ceeeEEEcCHHHHHHHHHH----hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 300 FSKAFAMTG-WRLGYIAGPKHFVAACNKI----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 300 ~SK~~~~~G-~R~G~v~~~~~~~~~l~~~----~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
|||.++ .| +|+||+++++++++.+... ....+++.+.++|.++.++|+... .++.+++.++..+..++.+.+.
T Consensus 259 ~sK~l~-~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~ 336 (430)
T 3i4j_A 259 LGKGLA-AGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE-REDLTGAAKERGAQLLAGLQAL 336 (430)
T ss_dssp ECGGGT-TTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHH
T ss_pred Eccccc-CCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHH
Confidence 999999 69 9999999999999998864 344556789999999999997411 0234555555555556666665
Q ss_pred hccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 375 FGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 375 L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+++++...++.|.| +++.+.+.... ..+.......++++.|+++ ||.+
T Consensus 337 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-Gv~v 386 (430)
T 3i4j_A 337 QARFPQMMQVRGTGLL-LGVVLGDLATG--QAFETPGIASRIGAAALKR-GLIT 386 (430)
T ss_dssp HHHCTTEEEEEEETTE-EEEEEC--------------CHHHHHHHHHHT-TEEC
T ss_pred HHhCCCeEEEEEEEEE-EEEEecccccc--CCCccHHHHHHHHHHHHhC-CCEE
Confidence 5566777777777765 66666431000 0000001247899998866 8876
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=249.61 Aligned_cols=291 Identities=16% Similarity=0.133 Sum_probs=216.7
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEE
Q 014172 103 GEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182 (429)
Q Consensus 103 g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~V 182 (429)
+..+.++|+.+.+++.+.+ ...|.+ +..++.+.+.+++.+.+|.+ .+++|++|+|+++++..++++++++||+|
T Consensus 28 ~p~p~~~~~~v~~a~~~~~---~~~~~~--~~~~~~~~l~~~la~~~~~~-~~~~v~~~~gg~~al~~~~~~~~~~gd~v 101 (393)
T 3kgw_A 28 GPGPSNLAPRVLAAGSLRM---IGHMQK--EMLQIMEEIKQGIQYVFQTR-NPLTLVVSGSGHCAMETALFNLLEPGDSF 101 (393)
T ss_dssp SSSCCCCCHHHHHHTTCCC---CCTTSH--HHHHHHHHHHHHHHHHHTCC-CSEEEEESCCTTTHHHHHHHHHCCTTCEE
T ss_pred cCCCCCCCHHHHHHhcccc---cCcccH--HHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCcHHHHHHHHHhcCCCCCEE
Confidence 3344566788888776532 112222 22345555555555556643 33469999999999999999999999999
Q ss_pred EEcCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh
Q 014172 183 IIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259 (429)
Q Consensus 183 lv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~ 259 (429)
+++.++|.+ +...++..|++++.++++.+ +.+|+++|++++++ ++++|++++|+||||.+++ +++|.++|++
T Consensus 102 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~ 176 (393)
T 3kgw_A 102 LTGTNGIWGMRAAEIADRIGARVHQMIKKPG--EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQP---LDGFGELCHR 176 (393)
T ss_dssp EEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHH
T ss_pred EEEeCCchhHHHHHHHHHcCCceEEEeCCCC--CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhcc---HHHHHHHHHH
Confidence 999988753 36778889999999998643 45899999999988 9999999999999999999 8899999999
Q ss_pred CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhc---------
Q 014172 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--------- 330 (429)
Q Consensus 260 ~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~--------- 330 (429)
| |+++|+||+|... .....+ . ..+.++++.|+||.++ .+.++||+++++++++.+......
T Consensus 177 ~-~~~li~De~~~~g----~~~~~~---~-~~~~d~~~~s~sK~~~-~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (393)
T 3kgw_A 177 Y-QCLLLVDSVASLG----GVPIYM---D-QQGIDIMYSSSQKVLN-APPGISLISFNDKAKYKVYSRKTKPVSFYTDIT 246 (393)
T ss_dssp T-TCEEEEECTTTTT----TSCCCT---T-TTTCCEEEEESSSTTC-CCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH
T ss_pred c-CCEEEEECCcccc----Ccccch---h-hcCCCEEEecCccccc-CCCceeEEEECHHHHHHHhccCCCCCceeecHH
Confidence 9 9999999998742 111111 1 1355689999999874 344589999999999888653211
Q ss_pred --------------ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC----ceEEE
Q 014172 331 --------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYL 392 (429)
Q Consensus 331 --------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~----~~~~~ 392 (429)
...+.+...+.++.++++.. .++++++++++++++++++.+.|+++ |+++..+. .++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 323 (393)
T 3kgw_A 247 YLAKLWGCEGETRVIHHTTPVTSLYCLRESLALI--AEQGLENCWRRHREATAHLHKHLQEM-GLKFFVKDPEIRLPTIT 323 (393)
T ss_dssp HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSSSGGGBCSSEE
T ss_pred HHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcCCeEE
Confidence 12345677777777777641 12347889999999999999999998 88876443 35677
Q ss_pred EEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+.++.. .+..+++++|++++||.+
T Consensus 324 ~~~~~~~-----------~~~~~~~~~l~~~~gi~v 348 (393)
T 3kgw_A 324 TVTVPAG-----------YNWRDIVSYVLDHFSIEI 348 (393)
T ss_dssp EEECCTT-----------BCHHHHHHHHHHHHCEEC
T ss_pred EEeCCCC-----------CCHHHHHHHHHHhCCEEE
Confidence 8888743 268899999998878876
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=250.06 Aligned_cols=299 Identities=13% Similarity=0.136 Sum_probs=220.5
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|++.|. ..++. ++.+.+++.+.+.+....+ .....+.++++++++.+.+| .++|++|+|+++++.
T Consensus 37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~~a~~ 110 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG--NGYTNEPVLRLAKKLIDATF----ADRVFFCNSGAEANE 110 (406)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCC--TTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccccc--CCcCCHHHHHHHHHHHhhCC----CCeEEEeCcHHHHHH
Confidence 467799999883 33333 7899999999886532211 11123445566666666555 359999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
.++++++. +| |.|++++|+|+++...+...+. .+..+|. .|+++|+++++++
T Consensus 111 ~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 183 (406)
T 4adb_A 111 AALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDS 183 (406)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTT
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCC
Confidence 99998865 66 9999999999998766555544 3334432 3899999999988
Q ss_pred CcEEEEcCCCCCccCCC--CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 229 SRLLILCSPSNPTGSVY--PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~~~--~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
+++|+++ |+||||.++ +.+++++|.++|++| |+++|+||+|.++.+.+... .+.... ...+++ ||||.++
T Consensus 184 ~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~-~~~li~De~~~~~~~~g~~~-~~~~~~-~~~d~~---t~sK~~~- 255 (406)
T 4adb_A 184 TCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRH-NALLIFDEVQTGVGRTGELY-AYMHYG-VTPDLL---TTAKALG- 255 (406)
T ss_dssp EEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-HHHHHT-CCCSEE---EECGGGG-
T ss_pred eEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccchhH-HHHhcC-CCCCEE---Eechhhc-
Confidence 9999888 999999998 999999999999999 99999999999876655321 211121 122223 6899999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCce
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVK 382 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g~~ 382 (429)
+|+|+||+++++++++.+.......+++.+.+.+.++.++|+.. ++ ++..+.++++++++.+.|+++ +.+.
T Consensus 256 ~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 330 (406)
T 4adb_A 256 GGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELI---NT--PEMLNGVKQRHDWFVERLNTINHRYGLFS 330 (406)
T ss_dssp TTSCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHH---SS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred CCCCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHH---Hh--cCHHHHHHHHHHHHHHHHHHHHHhCCCce
Confidence 99999999999999988876666667788999999999988751 11 567778888888888888765 1122
Q ss_pred eecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 383 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.. +..++++|+.++... ..+..+++++|+++ ||.+
T Consensus 331 ~~-~~~g~~~~~~~~~~~---------~~~~~~~~~~l~~~-gi~v 365 (406)
T 4adb_A 331 EV-RGLGLLIGCVLNADY---------AGQAKQISQEAAKA-GVMV 365 (406)
T ss_dssp EE-EEETTEEEEEECTTT---------TTCHHHHHHHHHHT-TEEC
T ss_pred EE-EEEEEEEEEEEeCCc---------HHHHHHHHHHHHHC-CcEE
Confidence 12 234566888887521 02578999999887 8876
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=252.14 Aligned_cols=302 Identities=13% Similarity=0.119 Sum_probs=212.5
Q ss_pred cCCCeEEcCCCCC--CCCC--hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~--p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+.++|++.|.+ +++. |+++.+++.+++.... .|++..+..+++.++++.+.+.+|.++ +++|++|+|+++++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~-~~~v~~~~gg~ea~ 117 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-HAAANDFYNIPQLELAKKLVTYSPGNF-QKKVFFSNSGTEAI 117 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-CCSCSCSCCHHHHHHHHHHHHHSSCSS-CEEEEEESSHHHHH
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-cccccccCCHHHHHHHHHHHHhCCCCc-CCEEEEeCchHHHH
Confidence 4567899999884 4544 7999999999986532 344444555677788888888777543 78999999999999
Q ss_pred HHHHHHhcC-CCCEEEEcCCCCCChHHH-HHHcC-------------CEEEEecCCCCC--CCC------------CCHH
Q 014172 169 LQAVLAVCS-PGDEVIIPAPFWVSYPEM-ARIAD-------------ATPVILPTRISE--NFL------------LDPK 219 (429)
Q Consensus 169 ~~~l~~l~~-~gd~Vlv~~p~y~~~~~~-~~~~g-------------~~~~~v~~~~~~--~~~------------~d~e 219 (429)
..+++++.. +||+|++.+|+|+++... ....| .+++.+|.+... .|+ +|++
T Consensus 118 ~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~ 197 (419)
T 2eo5_A 118 EASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIE 197 (419)
T ss_dssp HHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHH
Confidence 999987654 489999999999865543 32222 256777764210 112 3688
Q ss_pred HHH-hhccc-----CCcEEEEcCCC-CCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 220 VLE-SKLTE-----KSRLLILCSPS-NPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 220 ~l~-~~l~~-----~~~~i~l~~p~-NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
+|+ +++++ +++ +++++|+ ||||. +.+.+++++|.++|++| |+++|+||+|.++.+.+.. ..+... +..
T Consensus 198 ~l~~~~i~~~~~~~~~~-~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~~~g~~g~~-~~~~~~-~~~ 273 (419)
T 2eo5_A 198 FIEDYIFVNLVPPEEVA-GIFFEPIQGEGGYVIPPKNFFAELQKLAKKY-GILLVDDEVQMGLGRTGKL-FAIENF-NTV 273 (419)
T ss_dssp HHHHTHHHHTCCGGGEE-EEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGG-TCC
T ss_pred HHHHHHHhhccCCCCEE-EEEEeCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCcch-hhHHhc-CCC
Confidence 999 88863 444 4555664 67896 67888999999999999 9999999999987655431 111111 112
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~ 370 (429)
.+ +.||||.++ .| +|+||++++++++ .+ ......+.+.+.++|.++.++|+. .+ ++++++++++++
T Consensus 274 ~d---~~t~sK~~~-~G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~---~~----~~~~~~~~~~~~ 340 (419)
T 2eo5_A 274 PD---VITLAKALG-GGIMPIGATIFRKDLD-FK-PGMHSNTFGGNALACAIGSKVIDI---VK----DLLPHVNEIGKI 340 (419)
T ss_dssp CS---EEEECGGGG-TTTSCCEEEEEEGGGC-CC-------CCCCCHHHHHHHHHHHHH---HH----HHHHHHHHHHHH
T ss_pred CC---EEEeccccc-CCccceEEEEEchHhh-cC-CcccCCCCCCCHHHHHHHHHHHHH---HH----HHHHHHHHHHHH
Confidence 22 338999999 59 9999999999887 66 323334567799999999999975 22 277889999999
Q ss_pred HHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 371 l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.|+++ +...++.|. |+|+++... . .... ++++|++ .||.+
T Consensus 341 l~~~L~~~--~~~~~~~g~-~~~i~~~~~-~---------~~~~-~~~~l~~-~Gv~v 383 (419)
T 2eo5_A 341 FAEELQGL--ADDVRGIGL-AWGLEYNEK-K---------VRDR-IIGESFK-RGLLL 383 (419)
T ss_dssp HHHHHTTS--SSEEEEETT-EEEEECSCH-H---------HHHH-HHHHHHH-TTEEC
T ss_pred HHHHHHHh--hhheEeeeE-EEEEEEecC-c---------cHHH-HHHHHHH-CCCEE
Confidence 99999886 444455554 577888321 0 1245 8888885 49976
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=253.68 Aligned_cols=296 Identities=15% Similarity=0.079 Sum_probs=216.5
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCC----CCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFT----RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~----~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 170 (429)
.+.|.|+.+.+. ++|+.+.+++.+.+.+... .|....+..++.+.+.+++.+.+| .++++|++|+|+++++.+
T Consensus 19 ~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~g~t~al~~ 95 (400)
T 3vax_A 19 SHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVS--AEPDELIFTSGATESNNI 95 (400)
T ss_dssp ---CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTT--CCGGGEEEESCHHHHHHH
T ss_pred CCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcC--CCCCcEEEeCCHHHHHHH
Confidence 457888877766 5688999999888754211 121112223455566666666666 457899999999999999
Q ss_pred HHHHhc----CCCC-EEEEcCCCCCChHHHHHH---cCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 171 AVLAVC----SPGD-EVIIPAPFWVSYPEMARI---ADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 171 ~l~~l~----~~gd-~Vlv~~p~y~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
++++++ ++|| +|+++.++|+++...+.. .|++++.++++. ++.+|+++|++++++++++|++++|+||||
T Consensus 96 ~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~v~~~~~~nptG 173 (400)
T 3vax_A 96 ALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDTLLVSLMHVNNETG 173 (400)
T ss_dssp HHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTEEEEECCSBCTTTC
T ss_pred HHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCceEEEEECCCCCce
Confidence 999998 8999 999999999988766554 599999999864 466899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE-cCHH-H
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKH-F 320 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~-~~~~-~ 320 (429)
.+++ +++|.++|++| |++||+|++|.... ....+.. . .++++.|+||.+|++| +|+++ ++++ +
T Consensus 174 ~~~~---l~~i~~la~~~-~~~li~D~a~~~~~----~~~~~~~----~-~d~~~~s~~K~~g~~g--~g~~~~~~~~~~ 238 (400)
T 3vax_A 174 VIQP---VAELAQQLRAT-PTYLHVDAAQGYGK----VPGDLTT----P-IDMISISGHKIGAPKG--VGALVTRRREEM 238 (400)
T ss_dssp BBCC---HHHHHHHHTTS-SCEEEEECTTTTTT----SGGGGGS----C-CSEEEEETGGGTSCSS--CEEEEECBCSSS
T ss_pred eeCc---HHHHHHHHHhc-CCEEEEEhhhhcCC----CCcChhh----c-CcEEEEeHHHhCCCCc--eEEEEEecchhc
Confidence 9999 88999999999 99999999998522 1112211 1 4589999999877555 66666 6551 1
Q ss_pred H---HHHHHHh-------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc--
Q 014172 321 V---AACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG-- 388 (429)
Q Consensus 321 ~---~~l~~~~-------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~-- 388 (429)
. ..+.... .....+++...+.++.++++. ..+++++++++++++++++.+.|+ .+|+++..+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~l~~~L~-~~~~~~~~~~~~~ 314 (400)
T 3vax_A 239 DDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI---FEAEHAQWQVAAQDLRSRLLAGLA-STSFQVNGDQDHV 314 (400)
T ss_dssp TTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH---HHHSHHHHHHHHHHHHHHHHHHHT-TTTCEECSCTTSB
T ss_pred cccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHhhC-CCCEEEeCCcccC
Confidence 1 1111111 112334566777767677764 355688999999999999999999 78999887665
Q ss_pred -eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 389 -AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 389 -~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.++++.++.. +..++++.|. + ||.+
T Consensus 315 ~~~~~~~~~~~~------------~~~~l~~~L~-~-gi~v 341 (400)
T 3vax_A 315 VPHILNLSFEDV------------DAEAFLVTLK-D-LVAV 341 (400)
T ss_dssp CTTEEEEECTTC------------CHHHHHHHHH-H-HHHH
T ss_pred CCCEEEEEeCCC------------CHHHHHHHHh-c-CcEE
Confidence 34567777642 6888999887 4 7765
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=249.75 Aligned_cols=287 Identities=17% Similarity=0.215 Sum_probs=220.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.++|+|+.|.++++ +.+.+++.+.+..+ .|++..+..++++++++++. .+++++++|+++++..++++
T Consensus 30 ~~~id~~~~~~~~~--~~v~~a~~~~~~~~--~y~~~~~~~~l~~~la~~~~--------~~~~v~~~~Gt~a~~~~l~~ 97 (399)
T 2oga_A 30 VPFLDLKAAYEELR--AETDAAIARVLDSG--RYLLGPELEGFEAEFAAYCE--------TDHAVGVNSGMDALQLALRG 97 (399)
T ss_dssp BCSCCHHHHHHHTH--HHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHTT--------SSEEEEESCHHHHHHHHHHH
T ss_pred CcccccCcCCCCCC--HHHHHHHHHHHhcC--CCCCchhHHHHHHHHHHHHC--------CCeEEEecCHHHHHHHHHHH
Confidence 35789998887753 88999999888653 57666778899999999863 23678888889999999999
Q ss_pred h-cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 175 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 175 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+ +++||+|+++.|+|.++...++..|++++.+++++ +++.+|++.+++++++++++|+ |+||||.+.+ +++|
T Consensus 98 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~---l~~i 170 (399)
T 2oga_A 98 LGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE-DHPTLDPLLVEKAITPRTRALL---PVHLYGHPAD---MDAL 170 (399)
T ss_dssp TTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS-SSSSBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred hCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEecCC-CCCCcCHHHHHHhcCCCCeEEE---EeCCcCCccC---HHHH
Confidence 9 89999999999999999999999999999999864 3467999999999988888776 6789999998 8999
Q ss_pred HHHHHhCCCeEEEEccCCcccc-cCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEcC-HHHHHHHHHHhh
Q 014172 254 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQS 329 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~ 329 (429)
.++|+++ |+++|+||+|..+. +++. .+..+ ..+++.|| ||.++.+| |+||++++ +++++.+.....
T Consensus 171 ~~l~~~~-~~~li~Dea~~~g~~~~~~---~~~~~-----~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~~l~~~~~ 240 (399)
T 2oga_A 171 RELADRH-GLHIVEDAAQAHGARYRGR---RIGAG-----SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAERLRMLRN 240 (399)
T ss_dssp HHHHHHH-TCEECEECTTCTTCEETTE---ETTCT-----TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHHHHHHHHB
T ss_pred HHHHHHc-CCEEEEECcccccCccCCe---ecccc-----cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998753 3321 11111 24888998 79999778 99999986 888888876543
Q ss_pred cc------------cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCCceEEEEEec
Q 014172 330 QF------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDF 396 (429)
Q Consensus 330 ~~------------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~~~~~~~~l 396 (429)
.. ....+.+.+.++.++++. ++...++.+++++++.+.|++++|+++. .|+++.++|+.+
T Consensus 241 ~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~-------~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 313 (399)
T 2oga_A 241 YGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH-------LDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLF 313 (399)
T ss_dssp TTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSE
T ss_pred cCccccccccccccCCCcCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEE
Confidence 21 123466666666666653 3345556667788899999988888764 355666666333
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+-. . .+..++.+.|.++ ||.+
T Consensus 314 ~~~-~---------~~~~~l~~~L~~~-gI~v 334 (399)
T 2oga_A 314 TVR-T---------ERRDELRSHLDAR-GIDT 334 (399)
T ss_dssp EEE-C---------SSHHHHHHHHHHT-TBCC
T ss_pred EEE-C---------CCHHHHHHHHHHC-CCce
Confidence 211 0 2577899988765 8876
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=259.30 Aligned_cols=291 Identities=13% Similarity=0.130 Sum_probs=211.7
Q ss_pred CeEEcCCC-CCCCCChHHHHHHHHHH----HHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHH
Q 014172 96 SVIRLAAG-EPDFDTPVLIAEAGINA----IREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (429)
Q Consensus 96 ~~i~L~~g-~~~~~~p~~v~~a~~~~----~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 170 (429)
++|+|+.| ++++++|+.+.++.... ...+.+.|+ ..|.+ +++++++++.+.+|. +++++++|+++++..
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i~~~sGt~al~~ 163 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAFCFTSGMAALSA 163 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEEEESSHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEEEECCHHHHHHH
Confidence 47899998 88888887777766532 223345676 45666 899999999888873 377888888899997
Q ss_pred HHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCC
Q 014172 171 AVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 171 ~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~ 246 (429)
++. ++++||+|++++|+|.++... ++..|++++.++.+ |++++++++++++++|++++|+||||.+++
T Consensus 164 ~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 164 VTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGPQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp HHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCSSEEEEEECSSCTTTCCCCC
T ss_pred HHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhccCceEEEEeCCCCCCCEeec
Confidence 775 789999999999999998764 56789999999862 899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc-ccceeeEEEcC-HHHHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGP-KHFVAAC 324 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~-~G~R~G~v~~~-~~~~~~l 324 (429)
+++|+++|++| |+++|+||+|.... ...++ . .++++++.|+||.++. .|+|+||++++ +++++.+
T Consensus 236 ---l~~i~~la~~~-gi~livDea~~~g~----~~~~~-~----~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l 302 (464)
T 1ibj_A 236 ---IRKISEMAHAQ-GALVLVDNSIMSPV----LSRPL-E----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEV 302 (464)
T ss_dssp ---HHHHHHHHHTT-TCEEEEECTTTCTT----TCCGG-G----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEECCCcccc----cCChh-h----cCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHH
Confidence 99999999999 99999999997521 11111 1 3678999999999864 48999999998 4888888
Q ss_pred HHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH----------HHHHhccCCCceeecCCc---eEE
Q 014172 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF----------LVKSFGELEGVKMSEPQG---AFY 391 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~----------l~~~L~~l~g~~~~~p~~---~~~ 391 (429)
.........+.+.+.|.++..+++. ....++...+......++ +.+.|+++|++++..++. |.+
T Consensus 303 ~~~~~~~g~~~~~~~~~a~~~al~~---~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~ 379 (464)
T 1ibj_A 303 YFLQNSEGSGLAPFDCWLCLRGIKT---MALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSV 379 (464)
T ss_dssp HHHHHHTTCBCCHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSE
T ss_pred HHHHHhcCCCCCHHHHHHHHhchhh---HHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceE
Confidence 8776555566788888888888764 222232222222222222 234455566777666542 335
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++++++. ....+|+++|.. .||.+
T Consensus 380 ~~~~l~~~-----------~~~~~~~~~L~~-~gi~v 404 (464)
T 1ibj_A 380 FSFITGSV-----------ALSKHLVETTKY-FSIAV 404 (464)
T ss_dssp EEEECSCH-----------HHHHHHHHHCSS-SEECS
T ss_pred EEEEECCH-----------HHHHHHHHhcCc-ceEee
Confidence 77777421 013456666543 46655
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=242.85 Aligned_cols=292 Identities=17% Similarity=0.248 Sum_probs=214.2
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cC
Q 014172 101 AAGEPDFDT-PVLIAEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CS 177 (429)
Q Consensus 101 ~~g~~~~~~-p~~v~~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~ 177 (429)
+.|.|++++ |+++.+++.+.+.++... |++..|..++++++++.+.+.+|.+ ++++++|+++++..++.++ ++
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~----~~i~~~~gt~al~~~~~~~~~~ 80 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP----YCVPTTSGSTALMLALEALGIG 80 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS----EEEEESCHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHcCCC
Confidence 456777766 799999999998765444 8777887777777777777777742 5677777889999999999 89
Q ss_pred CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHH
Q 014172 178 PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257 (429)
Q Consensus 178 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a 257 (429)
+||+|+++.|+|.++...++..|++++.+++++ +++.+|++.|++++++++++|+++ ||||...+ +++|.++|
T Consensus 81 ~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~---~~~i~~~~ 153 (418)
T 2c81_A 81 EGDEVIVPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITDKTKAIIPV---HLFGSMAN---MDEINEIA 153 (418)
T ss_dssp TTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCC---HHHHHHHH
T ss_pred CcCEEEECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCCCCeEEEEe---CCcCCccc---HHHHHHHH
Confidence 999999999999999999999999999999864 357799999999999889988854 58999877 99999999
Q ss_pred HhCCCeEEEEccCCcccc-cCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEcC-HHHHHHHHHHhhccc-
Q 014172 258 AKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT- 332 (429)
Q Consensus 258 ~~~~~i~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~- 332 (429)
++| |++||+|++|..+. +++.. +..+. .+.+.|| ||.++. | |+||++++ +++++.+........
T Consensus 154 ~~~-~~~li~D~a~~~~~~~~~~~---~~~~~-----~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~~~~~~~~~~~~ 222 (418)
T 2c81_A 154 QEH-NLFVIEDCAQSHGSVWNNQR---AGTIG-----DIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFELIQQLRADSRV 222 (418)
T ss_dssp HHT-TCEEEEECTTCTTCEETTEE---TTSSS-----SEEEEECCTTSSSCS-S-SCEEEEESCHHHHHHHHHHHBTTEE
T ss_pred HHC-CCEEEEECcccccCccCCEe---ccccc-----ceEEEeccCCcccCC-C-CeEEEEECCHHHHHHHHHHHHhCcc
Confidence 999 99999999999875 54321 11121 2777888 999995 8 99999995 788888776543211
Q ss_pred -----------CC-------C------chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCC
Q 014172 333 -----------SG-------A------SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQ 387 (429)
Q Consensus 333 -----------~~-------~------~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~ 387 (429)
+. . ....+.+ ..... .+++++..++.+++++++.+.|++++|+++. .++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa-~~~~~-----l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~ 296 (418)
T 2c81_A 223 YCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSA-ILLDQ-----LQELDDKNAIREKNAMFLNDALSKIDGIKVMKRPP 296 (418)
T ss_dssp ECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHH-HHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCT
T ss_pred ccccccccccchhhccccccccCcCCCcCHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCC
Confidence 00 0 0111211 11111 2335667777778889999999998898887 466
Q ss_pred c-eEE---EE-EecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 388 G-AFY---LF-IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 388 ~-~~~---~~-~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
+ +.+ ++ +.++.... ...+..+++++|.+++||.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~L~~~~gI~ 334 (418)
T 2c81_A 297 QVSRQTYYGYVFRFDPVKF-------GGLNADQFCEILREKLNMG 334 (418)
T ss_dssp TEEECCCSEEEEEECGGGT-------TTCCHHHHHHHHHHHHTCC
T ss_pred CCcccccEEEEEEEccccc-------cccCHHHHHHHHHHcCCCC
Confidence 5 332 33 66653000 0026789999998876887
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=248.85 Aligned_cols=299 Identities=13% Similarity=0.124 Sum_probs=214.8
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+++++.|. ++++ +|+.+.+++.+.+.... .++. ....++++.+++.+.+.+| .++++|++|+|+++++.
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~~~~l~~~la~~~~--~~~~~v~~~~gg~~a~~ 118 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM-AMPQ-TLPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANE 118 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC-CCCT-TSCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCC-CCcc-ccCCHHHHHHHHHHHHhcC--CCcCEEEEcCcHHHHHH
Confidence 356789999886 4555 68899999999887532 1211 1123455666666665555 36789999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCC-hHHHHHHcCCE------------EEEecCCCCCCCCCCHHHHHhhcccCCcEEEE
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVS-YPEMARIADAT------------PVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~-~~~~~~~~g~~------------~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l 234 (429)
.+++++. .+||.|++.+|+|++ +...+...|.+ +..++. .|+++|++++++++++|++
T Consensus 119 ~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~i~~~~~~v~~ 191 (395)
T 1vef_A 119 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEETAAVIL 191 (395)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-------CcHHHHHHHhccCEEEEEE
Confidence 9998764 578999999999875 45566777775 223321 4899999999888888887
Q ss_pred cCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 235 CSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 235 ~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
+.++||||.++ +.+++++|.++|++| |+++|+||+|.++.+.+... .+.... .... + .||||.++ .|+|+||
T Consensus 192 ~~~~~~tG~~~~~~~~l~~i~~l~~~~-~~~li~Dea~~~~~~~g~~~-~~~~~~-~~~d-~--~s~sK~~~-~g~~~G~ 264 (395)
T 1vef_A 192 EPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRF-AFEHFG-IVPD-I--LTLAKALG-GGVPLGV 264 (395)
T ss_dssp CSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSS-THHHHT-CCCS-E--EEECGGGG-TTSSCEE
T ss_pred eCccCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCccCCchh-HhhhcC-CCCC-E--EEEccccc-CCCceEE
Confidence 77789999875 688899999999999 99999999999754433211 111111 1112 2 28899999 4999999
Q ss_pred EEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC--ceeecCCceEE
Q 014172 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG--VKMSEPQGAFY 391 (429)
Q Consensus 314 v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g--~~~~~p~~~~~ 391 (429)
+++++++++.+.......+.+++.+.+.++.++++. ..+ .+..++++++++++.+.|+++.. +... +..|+|
T Consensus 265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~---~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~g~~ 338 (395)
T 1vef_A 265 AVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRY---LER--TRLWERAAELGPWFMEKLRAIPSPKIREV-RGMGLM 338 (395)
T ss_dssp EEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEE-EEETTE
T ss_pred EEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHHhhcCceEEE-EEEEEE
Confidence 999998877665432334556788888888888875 222 45678888999999999988732 2222 334567
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|++++. +..+++++|++++||.+
T Consensus 339 ~~~~~~~-------------~~~~l~~~l~~~~gi~v 362 (395)
T 1vef_A 339 VGLELKE-------------KAAPYIARLEKEHRVLA 362 (395)
T ss_dssp EEEEESS-------------CSHHHHHHHHHHHCEEC
T ss_pred EEEEEcC-------------hHHHHHHHHHHHCCeEE
Confidence 8888863 36789999983459876
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=247.69 Aligned_cols=295 Identities=14% Similarity=0.072 Sum_probs=211.6
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
...+.+..|++++++++.+.+++.+.+. ...|++..+..+|++++++++. .+..++++|+++++..++++
T Consensus 13 ~~~~~~~~~~~~~g~~p~v~~ai~~~~~--~~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~g~~a~~~a~~~ 82 (359)
T 3pj0_A 13 TPYKLGGNGPRNVGVLTEALQNIDDNLE--SDIYGNGAVIEDFETKIAKILG--------KQSAVFFPSGTMAQQIALRI 82 (359)
T ss_dssp CSEESSSSSCCBHHHHHHHTTTSCTTCB--CCBTTBSHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHH
T ss_pred cchhhcCCCccccCCCHHHHHHHHhhcc--cCcccCCHHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHH
Confidence 3567888888888888999998887432 3567777778899999998863 12335567888999999999
Q ss_pred hcCCCCE--EEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCc-cCCCCHH
Q 014172 175 VCSPGDE--VIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKN 248 (429)
Q Consensus 175 l~~~gd~--Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPt-G~~~~~~ 248 (429)
++.+||. |+++.++|.... ......|++++.++. +++.+|+++|+++ .+++++|++++||||+ |.+++.+
T Consensus 83 ~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~ 158 (359)
T 3pj0_A 83 WADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT---ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFE 158 (359)
T ss_dssp HHHHHTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSC---TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHH
T ss_pred HHhcCCCcEEEEeccceeeehhcchHHHhcCceEEecCC---cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHH
Confidence 9988886 555555543221 233567999999986 3467999999998 7789999999999998 7999999
Q ss_pred HHHHHHHHHHhCCCeEEEEccCCccccc--CCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH
Q 014172 249 LLDEIARIVAKHPRLLVLSDEIYEHIIY--APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (429)
Q Consensus 249 ~l~~I~~~a~~~~~i~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~ 326 (429)
++++|+++|++| |++||+|++|..+.. .+. +...+.. ...+++.||||.++.++. ||+++++++++.+..
T Consensus 159 ~l~~l~~~~~~~-~~~li~D~a~~~~~~~~~~~---~~~~~~~--~~d~~~~s~sK~~~~~~g--g~~~~~~~l~~~~~~ 230 (359)
T 3pj0_A 159 ELEKISEYCHEQ-GISLHLDGARLWEITPFYQK---SAEEICA--LFDSVYVSFYKGIGGIAG--AILAGNDDFVQEAKI 230 (359)
T ss_dssp HHHHHHHHHHHH-TCEEEEEETTCGGGHHHHTC---CHHHHHT--TCSEEEEESSSTTCCSSC--EEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCEEEEECcchhcchhhhCC---CHHHhhc--cCCEEEEeccccCCCcce--EEEECCHHHHHHHHH
Confidence 999999999999 999999999875431 121 1112211 223566799999875532 888999999999887
Q ss_pred HhhcccCCC--chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee-cCCceEEEEEecCCccCCc
Q 014172 327 IQSQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSE 403 (429)
Q Consensus 327 ~~~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~~~~~~~~l~~~~~~~ 403 (429)
.......+. ....+.++..+++. .+ +..++++++++++.+.|++++|+++. .|.+++|+|++++....
T Consensus 231 ~~~~~~~~~~~~~~~~~a~~~~l~~------~~-~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 301 (359)
T 3pj0_A 231 WKRRYGGDLISLYPYILSADYYFEK------RI-GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSAD-- 301 (359)
T ss_dssp HHHHTTCCCSCCHHHHHHHHHHHHH------HG-GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHH--
T ss_pred HHHHhCCCcchhHHHHHHHHHHHHH------HH-HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccc--
Confidence 654443332 23333333444432 22 33445788899999999999899885 56777778888864200
Q ss_pred ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 404 AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++.+.|.++ ||.+
T Consensus 302 -------~~~~~l~~~l~~~-GV~v 318 (359)
T 3pj0_A 302 -------EIGAILTKIQDET-GVGI 318 (359)
T ss_dssp -------HHHHHHHHHHHHH-CEEC
T ss_pred -------hhHHHHHHHHHhc-CcEe
Confidence 1356777777655 9976
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=242.10 Aligned_cols=302 Identities=13% Similarity=0.084 Sum_probs=218.6
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|++.| .+.++. ++++.+++.+.+.+..+.| ..+..++++++++++.+.+| +++|++|+|+++++.
T Consensus 34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~----~~~v~~~~gg~ea~~ 107 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS--NLYYNENIAAAAKNLAKASA----LERVFFTNSGTESIE 107 (395)
T ss_dssp TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC--TTSBCHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc--cccCCHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHH
Confidence 46779999988 445554 7999999999886543333 23446777777777777765 579999999999999
Q ss_pred HHHHHhc-------CCCCEEEEcCCCCCChHHHHHHcC-------------CEEEEecCCCCCCCCCCHHHHHhhcccCC
Q 014172 170 QAVLAVC-------SPGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKLTEKS 229 (429)
Q Consensus 170 ~~l~~l~-------~~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~e~l~~~l~~~~ 229 (429)
.+++.+. .++|.|++.+|+|+++...+...+ .++..++. .|+++|++++++++
T Consensus 108 ~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~ 180 (395)
T 3nx3_A 108 GAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNEKT 180 (395)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCTTE
T ss_pred HHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccCCe
Confidence 9998875 457999999999988765444332 34555553 28999999999888
Q ss_pred cEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc
Q 014172 230 RLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 230 ~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 308 (429)
++|+++.++|++|.+ .+++++++|.++|++| |+++|+||+|.++.+.+.. ...... +....+.||||.++ .|
T Consensus 181 ~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~----~~~~d~~t~sK~~~-~G 253 (395)
T 3nx3_A 181 CAIILESVQGEGGINPANKDFYKALRKLCDEK-DILLIADEIQCGMGRSGKF-FAYEHA----QILPDIMTSAKALG-CG 253 (395)
T ss_dssp EEEEEESEECTTSCEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGG----TCCCSEEEECGGGT-TT
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCCcCCcc-hhHHhc----CCCCCEEEeccccc-CC
Confidence 898888888877776 6788899999999999 9999999999987544421 111111 22223557999999 59
Q ss_pred ceeeEEEcCHHH-HHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 309 WRLGYIAGPKHF-VAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 309 ~R~G~v~~~~~~-~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
+|+||+++++++ ++.+.......+++.+.+++.++.++|+... .++++++.++..+..++.+.+.+.+++.+...++.
T Consensus 254 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 332 (395)
T 3nx3_A 254 LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK-EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGL 332 (395)
T ss_dssp SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeE
Confidence 999999999998 7777655445566789999999999887411 12344455555555555555555556555555555
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ .|+|+.++.. .+..+++++|+++ ||.+
T Consensus 333 g-~~~~~~~~~~-----------~~~~~~~~~l~~~-Gi~v 360 (395)
T 3nx3_A 333 G-FMQGLSLDKS-----------VKVAKVIQKCQEN-ALLL 360 (395)
T ss_dssp T-TEEEEEECTT-----------SCHHHHHHHHHHT-TEEC
T ss_pred E-EEEEEEeCCc-----------chHHHHHHHHHHC-CCEE
Confidence 5 4578888642 2578899998876 8875
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=244.38 Aligned_cols=309 Identities=12% Similarity=0.081 Sum_probs=212.8
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|++.|.+ +++ .|+++.+++.+.+.+... +....+..+.+.++++.+.+.++ .++++|++|+|+++++.
T Consensus 41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggtea~~ 117 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSH-VMFGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAVE 117 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSC-CCCSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccc-ccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 4567899998884 455 479999999998875422 21111123445555566666565 46789999999999999
Q ss_pred HHHHHhc---C----CCCEEEEcCCCCCChHHHHH-HcC-------------CEEEEecCCC---CCCC-CCCHHHHHhh
Q 014172 170 QAVLAVC---S----PGDEVIIPAPFWVSYPEMAR-IAD-------------ATPVILPTRI---SENF-LLDPKVLESK 224 (429)
Q Consensus 170 ~~l~~l~---~----~gd~Vlv~~p~y~~~~~~~~-~~g-------------~~~~~v~~~~---~~~~-~~d~e~l~~~ 224 (429)
.+++++. + |||+|++.+|+|+++...+. ..| ..++.++.+. ++.+ .+|+++|+++
T Consensus 118 ~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 197 (429)
T 1s0a_A 118 VAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARL 197 (429)
T ss_dssp HHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHH
Confidence 9988654 2 68999999999998655332 212 1234444431 1123 4799999998
Q ss_pred cc---cCCcEEEEcCC-CCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 225 LT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 225 l~---~~~~~i~l~~p-~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
++ +++++|+++.. +||||. +.+.+++++|.++|++| |+++|+||+|.++.+.+.. ..+.... .... +.|
T Consensus 198 l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~-~~~li~De~~~~~g~~g~~-~~~~~~~-~~~d---~~t 271 (429)
T 1s0a_A 198 MAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKL-FACEHAE-IAPD---ILC 271 (429)
T ss_dssp HHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGT-CCCS---EEE
T ss_pred HHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeehhhCCcccchH-HHhhhcC-CCCC---EEE
Confidence 87 34555544444 699996 55788899999999999 9999999999976544321 1121111 1122 347
Q ss_pred cChhccccc-ceeeEEEcCHHHHHHHHHHh-----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 014172 300 FSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 300 ~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~-----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (429)
|||.++ +| +|+||+++++++++.+.... ...+.+.+.+++.++.++|+. .++ ++..++++++++++.+
T Consensus 272 ~sK~l~-~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~---~~~--~~~~~~~~~~~~~l~~ 345 (429)
T 1s0a_A 272 LGKALT-GGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAI---LES--GDWQQQVADIEVQLRE 345 (429)
T ss_dssp ECGGGG-TSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHH---HHT--CHHHHHHHHHHHHHHH
T ss_pred eccccc-CCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHH
Confidence 999998 68 99999999999988876531 223556789999999888874 111 2456777788889999
Q ss_pred HhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 374 SFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 374 ~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.|+++ +++...++.|. |+|++++.. .+..+++++|+++ ||.+.
T Consensus 346 ~L~~l~~~~~~~~~~~~g~-~~~~~~~~~-----------~~~~~l~~~l~~~-Gi~v~ 391 (429)
T 1s0a_A 346 QLAPARDAEMVADVRVLGA-IGVVETTHP-----------VNMAALQKFFVEQ-GVWIR 391 (429)
T ss_dssp HHGGGGGCTTEEEEEEETT-EEEEEESSC-----------BCHHHHHHHHHHT-TEECC
T ss_pred HHHHHhcCCCEEEEEEeeE-EEEEEECCc-----------ccHHHHHHHHHHC-CCEEe
Confidence 88875 56655556554 688888742 2577899998865 99863
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=242.25 Aligned_cols=293 Identities=12% Similarity=0.049 Sum_probs=213.8
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
..+|+.|. .++|+++.+++.+.+. ..|+ .+..++.+++++++.+.+|.+.+.+.+++|+|+++++..++++++
T Consensus 20 ~~~~~pgp--~~~~~~v~~a~~~~~~---~~~~--~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~ 92 (376)
T 3f0h_A 20 MLNFTVGP--VMSSEEVRAIGAEQVP---YFRT--TEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCF 92 (376)
T ss_dssp CEECSSSS--CCCCHHHHHHHTSCCC---CCSS--HHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHC
T ss_pred ceeecCCC--CCCcHHHHHHhcCCCC---CCCC--HHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhcc
Confidence 45555543 4567888888765431 1232 234577788888888888864333455669999999999999999
Q ss_pred CCCCEEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 177 SPGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
++||+|+++.|.|.++. ..+...|++++.++.+ .++.+|+++++++++++++++++++|+||||.+++ +++|.
T Consensus 93 ~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~---l~~i~ 167 (376)
T 3f0h_A 93 TKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKLE--HGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYD---TMMIG 167 (376)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEECC--TTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECC---HHHHH
T ss_pred CCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCC--CCCCCCHHHHHHhhccCceEEEEecccCCcceecC---HHHHH
Confidence 99999999998766644 3577789999999986 34679999999999889999999999999999999 99999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEEEcCHHHHHHHHHHhh----
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQS---- 329 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~~~l~~~~~---- 329 (429)
++|++| |+++|+|++|..+.. ...+.. .+.++++.|+||.++ ++| +|++++++++++.+.....
T Consensus 168 ~l~~~~-~~~li~D~~~~~~~~----~~~~~~----~~~d~~~~s~~K~l~~~~G--~g~~~~~~~~~~~~~~~~~~~~~ 236 (376)
T 3f0h_A 168 EFCKKN-NMFFVCDCVSAFLAD----PFNMNE----CGADVMITGSQKVLACPPG--ISVIVLAPRGVERVEKSKVRTMY 236 (376)
T ss_dssp HHHHHT-TCEEEEECTTTTTTS----CCCHHH----HTCSEEEEETTTTTCCCSS--CEEEEECHHHHHHHHTCCCCCST
T ss_pred HHHHHc-CCEEEEEcCccccCc----cccccc----cCccEEEecCcccccCCCc--eEEEEECHHHHHHhhcCCCCcee
Confidence 999999 999999999986422 111111 234589999999998 555 7889999999888764211
Q ss_pred -------------cccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEE-
Q 014172 330 -------------QFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF- 393 (429)
Q Consensus 330 -------------~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~- 393 (429)
....+++...+.++.++++. ..+ .++++++.++++++++.+.|+++ |+++..+....+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~ 312 (376)
T 3f0h_A 237 FDLKDALKNQERGQTPFTPAVGILLQINERLKE---IKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTS 312 (376)
T ss_dssp TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEE
T ss_pred ecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEE
Confidence 11223444444555555543 122 47888999999999999999988 77766544332222
Q ss_pred EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..+. .+..+++++|++++||.+
T Consensus 313 ~~~~~------------~~~~~l~~~l~~~~gi~v 335 (376)
T 3f0h_A 313 VHPTT------------ANAYDIFLKLKDEYGIWI 335 (376)
T ss_dssp EEESS------------SCHHHHHHHHHHHSSEEC
T ss_pred EeCCC------------CCHHHHHHHHHHhCCEEE
Confidence 22222 268899999998889876
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=250.10 Aligned_cols=294 Identities=13% Similarity=0.060 Sum_probs=223.9
Q ss_pred CChHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC-----C
Q 014172 108 DTPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS-----P 178 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~-----~ 178 (429)
..++.+.+++.+++.. +...|...+|..++++.+++++.+.+|.+.+++++++|+|+++++.++++++++ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 3457788888887765 344566667788999999999999999765678999999999999999999865 5
Q ss_pred C---CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHH
Q 014172 179 G---DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255 (429)
Q Consensus 179 g---d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~ 255 (429)
| |+|+++.|+|.++...++..|++++.+|++. +++.+|+++|++++++++++|++++|+||||.+.+ +++|.+
T Consensus 155 g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~---l~~i~~ 230 (497)
T 3mc6_A 155 GITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADD---IEGLGK 230 (497)
T ss_dssp CCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCS---CTTTTT
T ss_pred CCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCC---HHHHHH
Confidence 6 8999999999999999999999999999864 35779999999999999999999999999999999 889999
Q ss_pred HHHhCCCeEEEEccCCcccccC-----CCCCC-ccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh
Q 014172 256 IVAKHPRLLVLSDEIYEHIIYA-----PATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (429)
Q Consensus 256 ~a~~~~~i~vi~Deay~~~~~~-----~~~~~-~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~ 329 (429)
+|++| |+++|+|++|+.+... +.... .+. .. ..+.++++.|++|.++ +|.++||++++++.+........
T Consensus 231 la~~~-g~~livD~a~~~~~~~f~~~~~~~~~~~~~-~~-~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~ 306 (497)
T 3mc6_A 231 IAQKY-KLPLHVDSCLGSFIVSFMEKAGYKNLPLLD-FR-VPGVTSISCDTHKYGF-APKGSSVIMYRNSDLRMHQYYVN 306 (497)
T ss_dssp HHHHT-TCCEEEETTTTHHHHGGGTTTTCCSCCCCS-TT-STTCCEEEEETTTTTC-CCSSCEEEECSSHHHHTTTSCCB
T ss_pred HHHHh-CCEEEEECcchhhhhhhhhhhcccCCcccc-cc-CCCCcEEEECchhhcC-CCCCceeEEecCHHHHhhhhccc
Confidence 99999 9999999999865421 11111 111 11 2355688999999875 78889999988765543321111
Q ss_pred -cccC----C------Cc---hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceee-cCCceEEEE
Q 014172 330 -QFTS----G------AS---SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMS-EPQGAFYLF 393 (429)
Q Consensus 330 -~~~~----~------~~---~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~-~p~~~~~~~ 393 (429)
.+.. . .+ ..++.++...+. .++++++.++..++++++.+.|++ ++|+++. +|.+++ ++
T Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~~~~~-v~ 380 (497)
T 3mc6_A 307 PAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG-----ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSV-IS 380 (497)
T ss_dssp TTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCCCSSE-EE
T ss_pred ccccCCCcCCcCcccCCcchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCeeE-EE
Confidence 1000 0 01 333555555554 456788888999999999999999 7999887 455555 44
Q ss_pred EecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 394 ~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..+. .+..++++.|.++ ||.+
T Consensus 381 ~~~~~------------~~~~~l~~~L~~~-Gi~v 402 (497)
T 3mc6_A 381 FSSKT------------LNIHELSDRLSKK-GWHF 402 (497)
T ss_dssp EECTT------------TTHHHHHHHHHTT-TCBC
T ss_pred EeCCC------------CCHHHHHHHHHhC-CEEE
Confidence 45543 2688999998876 8865
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=246.65 Aligned_cols=300 Identities=13% Similarity=0.137 Sum_probs=217.8
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||++.|. .+++ .++.+.+++.+.+.+.. .++ ..+..++++++++++.+.+| .++|++|+|+++++.
T Consensus 55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~-~~~-~~~~~~~~~~l~~~la~~~g----~~~v~~~~ggteA~~ 128 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLW-HTS-NVFTNEPALRLGRKLIDATF----AERVLFMNSGTEANE 128 (420)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC-CCC-TTSCCHHHHHHHHHHHHHSS----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhcc-ccc-CccCCHHHHHHHHHHHhhCC----CCeEEEeCCHHHHHH
Confidence 467799998884 3343 47899999999886532 222 22345677778888877765 479999999999999
Q ss_pred HHHHHhcC-------CC-CEEEEcCCCCCChHH-HHHHcCCE------------EEEecCCCCCCCCCCHHHHHhhcccC
Q 014172 170 QAVLAVCS-------PG-DEVIIPAPFWVSYPE-MARIADAT------------PVILPTRISENFLLDPKVLESKLTEK 228 (429)
Q Consensus 170 ~~l~~l~~-------~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~e~l~~~l~~~ 228 (429)
.++++++. +| ++|++.+|+|.++.. .+...|.+ ++.++. .|+++|+++++++
T Consensus 129 ~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~ 201 (420)
T 2pb2_A 129 TAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDH 201 (420)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTT
T ss_pred HHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccC
Confidence 99998875 77 599999999987654 44555653 455553 2899999999988
Q ss_pred CcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 229 SRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 229 ~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
+++|++++++|++|. +++.+++++|.++|++| |+++|+||+|.++.+.|.. ..+..+. ....++ ||||.++ +
T Consensus 202 ~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~-gi~lI~Dev~~g~~~~g~~-~~~~~~~-~~~dii---t~sK~l~-~ 274 (420)
T 2pb2_A 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH-QALLVFDEVQCGMGRTGDL-FAYMHYG-VTPDIL---TSAKALG-G 274 (420)
T ss_dssp EEEEEECSEETTTTSEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SHHHHHT-CCCSEE---EECGGGG-T
T ss_pred ceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc-CCEEEEEcCCcCcccCCcH-HHHHhcC-CCCCeE---Eeccccc-C
Confidence 999999888898884 68999999999999999 9999999999877655432 1111111 112222 7899999 9
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCcee
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKM 383 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g~~~ 383 (429)
|+|+||+++++++++.+.......+++.+.+++.++.++|+.. ++ +++.+.++++++++.+.|+++ +.+..
T Consensus 275 G~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (420)
T 2pb2_A 275 GFPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDII---NT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSD 349 (420)
T ss_dssp TSCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHH---SS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred CCceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHH---Hh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9999999999988776654333445678899999999888751 22 356777888888888888764 44444
Q ss_pred ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.| .|++++++.... .+..+++++|+++ ||.+
T Consensus 350 ~~~~g-~~~~v~~~~~~~---------~~~~~l~~~l~~~-Gi~v 383 (420)
T 2pb2_A 350 IRGMG-LLIGAELKPKYK---------GRARDFLYAGAEA-GVMV 383 (420)
T ss_dssp EEEET-TEEEEEECGGGT---------TCHHHHHHHHHHT-TEEC
T ss_pred EEecc-eEEEEEECCCch---------HHHHHHHHHHHHC-CCEE
Confidence 45555 457788864200 1478899999875 8876
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=239.15 Aligned_cols=293 Identities=11% Similarity=0.059 Sum_probs=220.1
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
.+.+.-| +.++|+++++++.+.+.++...|+. ..+..++.+.+.+++.+.+|.. ++++|++|+|+++++.++++++
T Consensus 5 ~~~~~p~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~~v~~~~g~t~al~~~~~~l 81 (362)
T 3ffr_A 5 KIYFTPG--PSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNYEVLFLASATEIWERIIQNC 81 (362)
T ss_dssp CEEECSS--SCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTEEEEEESCHHHHHHHHHHHH
T ss_pred ceeccCC--CcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCCchHHHHHHHHhc
Confidence 4555555 3445788888888887765423322 2234467777888888888753 5678999999999999999999
Q ss_pred cCCCCEEEEcCCCCCC-hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVS-YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
+++ +.+++..+.|.. +...++..|++++.++.+ .++.+|+++++ +++++++|++++|+||||.+++ +++|.
T Consensus 82 ~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~---l~~i~ 153 (362)
T 3ffr_A 82 VEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAA--FGKGFYPADIT--VPADAEIICLTHNETSSGVSMP---VEDIN 153 (362)
T ss_dssp CSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECC--TTCCCCGGGCC--CCTTCCEEEEESEETTTTEECC---HHHHT
T ss_pred cCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecC--CCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCC---HHHHH
Confidence 988 556666666652 345677889999999985 34678999998 7889999999999999999999 88899
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEEEcCHHHHHHHHHHhh----
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAACNKIQS---- 329 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~~~l~~~~~---- 329 (429)
++|++|||+++|+|++|..+.. ...+ .+.++++.|+||.++ ++| +|++++++++++.+.....
T Consensus 154 ~la~~~p~~~li~D~a~~~~~~----~~~~------~~~d~~~~s~~K~~~~~~G--~g~~~~~~~~~~~~~~~~~gg~~ 221 (362)
T 3ffr_A 154 TFRDKNKDALIFVDAVSSLPYP----KFDW------TKIDSVFFSVQKCFGLPAG--LGVWILNDRVIEKSKALLAKRKS 221 (362)
T ss_dssp TSGGGSTTSEEEEECTTTTTSS----CCCT------TSCSEEEEETTSTTCCCSC--CEEEEEEHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCEEEEecccccCCc----ccCh------hHCcEEEEecccccCCCCc--eEEEEECHHHHHHhhhccccCCC
Confidence 9999986799999999986321 1111 114588999999998 677 6888899998888776543
Q ss_pred -----------------cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC----Cc
Q 014172 330 -----------------QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG 388 (429)
Q Consensus 330 -----------------~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p----~~ 388 (429)
....+++...+.++..+++.- ..+.+++++++++++++++.+.|+++||+++..+ .+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 299 (362)
T 3ffr_A 222 IGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDM--LQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRS 299 (362)
T ss_dssp CCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBC
T ss_pred CcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcC
Confidence 113456777777776776530 0223678899999999999999999989988753 24
Q ss_pred eEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 389 AFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 389 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++|+.+++ +..+++++|.++ ||.+
T Consensus 300 ~~~~~~~~~~-------------~~~~~~~~l~~~-gi~~ 325 (362)
T 3ffr_A 300 MTTIVANTTM-------------LPGEINKILEPF-DMAV 325 (362)
T ss_dssp SSEEEEEESS-------------CHHHHHHHHGGG-TEEE
T ss_pred CceEEEecCC-------------CHHHHHHHHHHC-CeEE
Confidence 5668888863 578999999887 9875
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=252.08 Aligned_cols=288 Identities=14% Similarity=0.101 Sum_probs=217.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcE--EEecChHHHHHHHHHHhcCCC--------CEE
Q 014172 113 IAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLAVCSPG--------DEV 182 (429)
Q Consensus 113 v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i--~~t~G~~~al~~~l~~l~~~g--------d~V 182 (429)
+.+++...+......|...++..++++++++++.+.+|.+.+++++ ++|+|+++++..++++++++| |+|
T Consensus 116 ~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~V 195 (514)
T 3mad_A 116 LNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEA 195 (514)
T ss_dssp HHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEE
T ss_pred HHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeE
Confidence 3344433333334455555667789999999999999976555778 999999999999999998776 999
Q ss_pred EEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC
Q 014172 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262 (429)
Q Consensus 183 lv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~ 262 (429)
+++.|+|.++...++..|++++.+|++. ++.+|+++|++++++++++|++++|+||||.+.+ +++|.++|++| |
T Consensus 196 i~~~~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-~ 269 (514)
T 3mad_A 196 VVPVSAHAAFDKAAQYFGIKLVRTPLDA--DYRADVAAMREAITPNTVVVAGSAPGYPHGVVDP---IPEIAALAAEH-G 269 (514)
T ss_dssp EEETTSCTHHHHHHHHHTCEEEEECBCT--TSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCC---HHHHHHHHHHH-T
T ss_pred EEeCccchHHHHHHHHcCCeeEEeeeCC--CCCCCHHHHHHHhccCCEEEEEeCCCCCCccccC---HHHHHHHHHHh-C
Confidence 9999999999999999999999999864 5679999999999999999999999999999999 89999999999 9
Q ss_pred eEEEEccCCcccccC-----CCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh--------
Q 014172 263 LLVLSDEIYEHIIYA-----PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS-------- 329 (429)
Q Consensus 263 i~vi~Deay~~~~~~-----~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~-------- 329 (429)
+++|+|++|+.+.+. |.....+.. ...+.++++.|++|.++ +|.++||++++++..........
T Consensus 270 i~livDea~~~~~~~~~~~~g~~~~~~~~--~~~g~d~~~~s~~K~l~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (514)
T 3mad_A 270 IGCHVDACLGGFILPWAERLGYPVPPFDF--RLEGVTSVSADTHKYGY-GAKGTSVILYRRPDLLHYQYFIAADWPGGLY 346 (514)
T ss_dssp CEEEEECTTTTTTHHHHHHTTCCCCCCST--TSTTCCEEEECTTTTTC-CCSSCEEEEESSHHHHTTTCEEESSCTTCSE
T ss_pred CeEEEecccccccchhHHhcCCCCCcccc--cCCCCcEEEECchhccC-CCCCeEEEEEeCHHHhccccccccccCCCcc
Confidence 999999999987541 111112211 12356789999999975 77899999887765443221100
Q ss_pred ---cccCCCchH---HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCc
Q 014172 330 ---QFTSGASSI---SQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE 403 (429)
Q Consensus 330 ---~~~~~~~~~---~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~ 403 (429)
....+.+.. ++.++...+. .++++++.++..++++++.+.|++++|+++..+..+ ++|+..+..
T Consensus 347 ~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~-~~~~~~~~~---- 416 (514)
T 3mad_A 347 FSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLW-VIAVASDEL---- 416 (514)
T ss_dssp EESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCCSS-EEEEECSSS----
T ss_pred cCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCCeE-EEEEeCCCC----
Confidence 001122222 3333333332 466788899999999999999999989998766665 567766532
Q ss_pred ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 404 AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..++.++|+++ ||.+
T Consensus 417 --------~~~~l~~~L~~~-Gi~v 432 (514)
T 3mad_A 417 --------NIYQVMEEMAGR-GWRL 432 (514)
T ss_dssp --------CHHHHHHHHHTT-TCBC
T ss_pred --------CHHHHHHHHHhc-CCEe
Confidence 688999998877 8865
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-28 Score=244.06 Aligned_cols=323 Identities=13% Similarity=0.038 Sum_probs=226.7
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..| ...++. |+.+.+++.+++.+..+.|+...+..++++++++++.+..+ .+.++|++|+|+++++.
T Consensus 49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~gGseA~~ 126 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVYFGLSGSDANE 126 (460)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCC--CCcCEEEEeCchHHHHH
Confidence 57789999988 344544 69999999998876545565556677889999999988765 35679999999999999
Q ss_pred HHHHHhcC--------CCCEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCC--C-CCCCCC--------
Q 014172 170 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 217 (429)
Q Consensus 170 ~~l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d-------- 217 (429)
.++++++. +++.|++.+|+|+++...+...+. .+..++... . +++..+
T Consensus 127 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~ 206 (460)
T 3gju_A 127 TNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHC 206 (460)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHH
Confidence 99998874 469999999999988766554422 234444321 1 112233
Q ss_pred HHHHHhhcc----cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~----~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
+++|+++++ +++++|+++.++|++|. +++++.+++|.++|++| |+++|+||+|.+|.+.|.. .......
T Consensus 207 ~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~g~~-~~~~~~~---- 280 (460)
T 3gju_A 207 ADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKY-DVLLVADEVVTGFGRLGTM-FGSDHYG---- 280 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHHT----
T ss_pred HHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccccc-chHhhcC----
Confidence 588888886 45666667666778886 77888899999999999 9999999999987554421 1111111
Q ss_pred ceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
....+.+|||.++ .| +|+||+++++++++.+... ....+++.+.+++.++.++|+... .++.+++.++..
T Consensus 281 ~~pdi~t~sK~l~-gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~ 358 (460)
T 3gju_A 281 IKPDLITIAKGLT-SAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELID-EMDLVTNAGETG 358 (460)
T ss_dssp CCCSEEEECGGGT-TTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred CCCCeeeeehhhc-CCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 1112457999997 56 8999999999999988632 334566789999999999997411 134566777777
Q ss_pred HHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCC-CCCChHHHHHHHHHhCCeec
Q 014172 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFG-KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..++.+.+.+++++.+..+++.|.| +++.+...... ...+. ......++++.|+++ ||.+
T Consensus 359 ~~~~~~l~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~v 420 (460)
T 3gju_A 359 AYFRAELAKAVGGHKNVGEVRGDGML-AAVEFVADKDD-RVFFDASQKIGPQVATALAAS-GVIG 420 (460)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEETTE-EEEEECSBTTT-TBCCCGGGCHHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEeeeeEE-EEEEEccCccc-cccccchHHHHHHHHHHHHHC-CeEE
Confidence 77788888888887767777777765 66666432000 00000 001256788888877 8875
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=244.13 Aligned_cols=298 Identities=12% Similarity=0.053 Sum_probs=207.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCC------CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRY------TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y------~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
+.|+|..+++.. |+.+.+++.+.+.+.. ..| +......++++.+.+++.+.+|. ++++|++++| ++++
T Consensus 26 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~~sG-t~a~ 100 (417)
T 3n0l_A 26 EGLEMIASENFT--LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNC--KFANVQPNSG-SQAN 100 (417)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHH
T ss_pred cCeeeecccCCC--CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCC--CCcceEeccH-HHHH
Confidence 479998887664 7889999888774322 122 22223356666666677777774 5567888888 7999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHH---HHHH--cCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPE---MARI--ADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~---~~~~--~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG 242 (429)
..++.+++++||+|+++.|+|.++.. .+.. .+..++.++++ +++.+|+++|+++++ +++++|++++|+| |
T Consensus 101 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G 176 (417)
T 3n0l_A 101 QGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKPKLIVCGASAY--A 176 (417)
T ss_dssp HHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCCSEEEECCSSC--C
T ss_pred HHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCCeEEEECCccc--C
Confidence 99999999999999999999987654 3333 34456666665 557799999999998 6899999888886 8
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCc-ccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHF 320 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~ 320 (429)
.+++ +++|.++|++| |+++|+||+|. ++.+.+..+..+ ...++++.||||.+ +|+|+||++++ +++
T Consensus 177 ~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~~~~------~~~di~~~s~sK~l--~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 177 RVID---FAKFREIADEI-GAYLFADIAHIAGLVVAGEHPSPF------PYAHVVSSTTHKTL--RGPRGGIIMTNDEEL 244 (417)
T ss_dssp SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCCT------TTCSEEEEESSTTT--CSCSCEEEEESCHHH
T ss_pred ccCC---HHHHHHHHHHc-CCEEEEECccchhhhhcccCCCcc------ccceEEEeeCcccc--CCCCeeEEEECCHHH
Confidence 8888 89999999999 99999999964 444444322221 13458999999988 78999999998 788
Q ss_pred HHHHHHHhhcccCC-CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecCC
Q 014172 321 VAACNKIQSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFST 398 (429)
Q Consensus 321 ~~~l~~~~~~~~~~-~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~~ 398 (429)
++.+.........+ ++...+.++..++... ..+++++++++++++++++.+.|.+. |+++.. +..++++|++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~ 321 (417)
T 3n0l_A 245 AKKINSAIFPGIQGGPLMHVIAAKAVGFKFN--LSDEWKVYAKQVRTNAQVLANVLMDR-KFKLVSDGTDNHLVLMSFLD 321 (417)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTT
T ss_pred HHHHhhhhCCcccCCcHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CceeccCCCCceEEEEEccc
Confidence 88887765444333 3444444444445431 13567888899999999999999985 887764 3445678888864
Q ss_pred ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 399 YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
. + .+..++.+.| +++||.+
T Consensus 322 ~-~---------~~~~~~~~~l-~~~gi~v 340 (417)
T 3n0l_A 322 R-E---------FSGKDADLAL-GNAGITA 340 (417)
T ss_dssp S-S---------SCHHHHHHHH-HHTTEEC
T ss_pred C-C---------CCHHHHHHHH-HHcCeEE
Confidence 2 1 2455666555 5669976
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=247.95 Aligned_cols=260 Identities=15% Similarity=0.118 Sum_probs=185.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCC----------HHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGT----------LELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~----------~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
+.+.|+.+.+. ++|+.+.+++.+.+.. ...|.. .+. .++|+++++++ | +++++|++|+|++
T Consensus 18 ~~~~Ld~~~~~-~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~~~g~t 88 (432)
T 3a9z_A 18 RKVYMDYNATT-PLEPEVIQAVTEAMKE-AWGNPS-SSYVAGRKAKDIINTARASLAKMI----G--GKPQDIIFTSGGT 88 (432)
T ss_dssp CCEECBTTTCC-CCCHHHHHHHHHHHHH-CCSCTT-CSSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESCHH
T ss_pred CcEEeeCCccC-CCCHHHHHHHHHHHHH-hcCCCc-cCcHHHHHHHHHHHHHHHHHHHHc----C--CCcCeEEEeCChH
Confidence 57999998877 6688999999998865 233422 222 46777777765 4 4678999999999
Q ss_pred HHHHHHHHHhc--------CCCCEEEEcCCCCCCh-----------------HHHHHHcCCEEEEecCCCCCCCCCCHHH
Q 014172 166 QSILQAVLAVC--------SPGDEVIIPAPFWVSY-----------------PEMARIADATPVILPTRISENFLLDPKV 220 (429)
Q Consensus 166 ~al~~~l~~l~--------~~gd~Vlv~~p~y~~~-----------------~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 220 (429)
+++.+++.+++ ++||+|+++.|+|..| ...++..|++++.+|++.+ ++.+|++.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~ 167 (432)
T 3a9z_A 89 ESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVED 167 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHH
T ss_pred HHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHH
Confidence 99999999986 5899999999999876 3444567999999998642 35689999
Q ss_pred HHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC----------eEEEEccCCcccccCCCCCCccccCCCC
Q 014172 221 LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR----------LLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 221 l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~----------i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
|++++++++++|++++|+||||.+++ +++|.++|+++ + ++||+||+|+.+ .....+..+
T Consensus 168 l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~-~~~~~~~~~~~~~livDea~~~~----~~~~~~~~~--- 236 (432)
T 3a9z_A 168 ILAAVRPTTCLVTIMLANNETGVIMP---ISEISRRIKAL-NQIRAASGLPRVLVHTDAAQALG----KRRVDVEDL--- 236 (432)
T ss_dssp HHHTCCTTEEEEECCSBCTTTCBBCC---HHHHHHHHHHH-HHHHHHHTCCCCEEEEECTTTTT----TSCCCHHHH---
T ss_pred HHHhccCCceEEEEECcccCcccccC---HHHHHHHHHhc-CcccccccCCceEEEEEchhhhC----CcccChhhc---
Confidence 99999989999999999999999999 77899999999 8 999999999763 222222222
Q ss_pred CCceEEEeccChhcccccceeeEEEcCHHH-HHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHF-VAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~-~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
+..+++.|+||.+| +|+||+++++++ ...+... ......+.+.+.+.++.++++. ..++++++++
T Consensus 237 -~~d~~~~s~~K~~g---~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~---~~~~~~~~~~ 309 (432)
T 3a9z_A 237 -GVDFLTIVGHKFYG---PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADL---VSENCETYEA 309 (432)
T ss_dssp -CCSEEEEEGGGTTC---CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred -CCCEEEEehhHhcC---CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHH---HHhhHHHHHH
Confidence 23367899999874 679999998765 2222211 1112234677777777777775 3567888999
Q ss_pred HHHHHHHHHHHHhccCCCcee
Q 014172 363 AFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+++++++++.+.|++++|+++
T Consensus 310 ~~~~~~~~l~~~L~~~~g~~~ 330 (432)
T 3a9z_A 310 HMRDIRDYLEERLEAEFGKRI 330 (432)
T ss_dssp HHHHHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHHHHHHHHhccCCcE
Confidence 999999999999988656543
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-28 Score=237.15 Aligned_cols=285 Identities=17% Similarity=0.219 Sum_probs=212.8
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV 175 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l 175 (429)
++|+|+. |++ |+++.+++.+.+.+. .|.+..+..++++++++++. .+++++|+|+++++..+++++
T Consensus 9 ~~i~~~~--p~~--~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~al~~~~~~~ 74 (393)
T 1mdo_A 9 DFLPFSR--PAM--GAEELAAVKTVLDSG--WITTGPKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMAL 74 (393)
T ss_dssp CCBCSCC--CCC--CHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHT
T ss_pred cccccCC--CCC--CHHHHHHHHHHHhcC--CcCCChHHHHHHHHHHHHhC--------CCcEEEecChHHHHHHHHHHc
Confidence 3677776 554 467788998888764 34456678899999999973 248999999999999999999
Q ss_pred -cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 176 -CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 176 -~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
+++||+|+++.|+|.++...++..|++++.+++++ +++.+|++.+++.+++++++|+++ ||||.+.+ +++|.
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~~~v~~~---~~~G~~~~---~~~i~ 147 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIY 147 (393)
T ss_dssp TCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHH
T ss_pred CCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-CcCCCCHHHHHHhcCCCceEEEEe---CCCCCcCC---HHHHH
Confidence 89999999999999999999999999999999874 346799999999998888888865 48999988 89999
Q ss_pred HHHHhCCCeEEEEccCCccc-ccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhccc
Q 014172 255 RIVAKHPRLLVLSDEIYEHI-IYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFT 332 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~ 332 (429)
++|++| |+++|+|++|..+ .+.+. . +. . .++++.||||..+++|.|+||++++ +++++.+........
T Consensus 148 ~l~~~~-~~~li~D~a~~~g~~~~~~---~---~~--~-~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~ 217 (393)
T 1mdo_A 148 ALGERY-GIPVIEDAAHATGTSYKGR---H---IG--A-RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGL 217 (393)
T ss_dssp HHHHHH-TCCBCEECTTCTTCEETTE---E---TT--S-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTE
T ss_pred HHHHHc-CCeEEEECccccCCeECCe---e---cC--C-CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCC
Confidence 999999 9999999999963 34321 1 11 1 5699999994444456799999996 788888876533211
Q ss_pred ------------------------CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-C-
Q 014172 333 ------------------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-P- 386 (429)
Q Consensus 333 ------------------------~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p- 386 (429)
...+.+...++...++ .+++..++.+++++++.+.|++++ +++.. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~-------~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~ 289 (393)
T 1mdo_A 218 GVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLP-FQPLSLPS 289 (393)
T ss_dssp ECC-----------CCEESSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSS-CEECCCCS
T ss_pred cccchhhhcccccccccccccCccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCC-cccccCCC
Confidence 1123343333333333 245566666778888999998884 76642 2
Q ss_pred ----CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 ----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++++|+.++... .+ .+..++.+.|.++ ||.+
T Consensus 290 ~~~~~~~~~~~v~~~~~~----~~----~~~~~l~~~l~~~-gi~v 326 (393)
T 1mdo_A 290 WEHIHAWHLFIIRVDEAR----CG----ITRDALMASLKTK-GIGT 326 (393)
T ss_dssp SCEECCCSCEEEECCHHH----HS----SCHHHHHHHHHHT-TBCC
T ss_pred CCCCceeEEEEEEecccc----cc----cCHHHHHHHHHhC-CCCc
Confidence 45567889887300 00 2678899998775 8875
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=241.99 Aligned_cols=293 Identities=12% Similarity=0.086 Sum_probs=213.1
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCC--CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA--GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~--G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
+.+.|..| +.++++++.+++.+... ..|.+.. ...+++++++++++...| +++++|++|+|+++++..+++
T Consensus 5 ~~~~~~p~--p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~~g~t~al~~~~~ 77 (385)
T 2bkw_A 5 VDTLLIPG--PIILSGAVQKALDVPSL---GHTSPEFVSIFQRVLKNTRAVFKSAAA--SKSQPFVLAGSGTLGWDIFAS 77 (385)
T ss_dssp CCEECSSS--SCCCCHHHHHTTSCCCC---CTTSHHHHHHHHHHHHHHHHHTTCCGG--GTCEEEEEESCTTHHHHHHHH
T ss_pred cceeecCC--CcCchHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHHhCCCCC--CCCceEEEcCchHHHHHHHHH
Confidence 34566665 34456778777665422 1232321 345677788887765433 356899999999999999999
Q ss_pred Hhc---CCCCEEEEc-CCCCCChH-HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCH
Q 014172 174 AVC---SPGDEVIIP-APFWVSYP-EMARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPK 247 (429)
Q Consensus 174 ~l~---~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~ 247 (429)
+++ ++||+|+++ .|+|..+. ..++..|++++.+++. +.++.+|++.|++++++ ++++|++++|+||||.+++
T Consensus 78 ~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~- 155 (385)
T 2bkw_A 78 NFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPL-KIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD- 155 (385)
T ss_dssp HHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCS-STTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC-
T ss_pred HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecC-CCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcC-
Confidence 998 899999887 55666653 6778899999999982 13466899999999987 8999999999999999999
Q ss_pred HHHHHHHHHHHhCC-CeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEEEcCHHHHH-HH
Q 014172 248 NLLDEIARIVAKHP-RLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVA-AC 324 (429)
Q Consensus 248 ~~l~~I~~~a~~~~-~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~~-~l 324 (429)
+++|.++|++|+ |++||+|++|... .....+.. .+.++++.|+||.++ ++| +||+++++++++ .+
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~----~~~~~~~~----~~~d~~~~s~~K~~~~~~G--~G~~~~~~~~~~~~l 223 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIG----CEEFEFDE----WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYAL 223 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTT----TSCCCTTT----TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHT
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccC----Cccccccc----cCceEEEecCccccccCCc--ceEEEEcHHHHHHHH
Confidence 889999999973 6999999999742 11112211 355689999999764 556 599999988776 43
Q ss_pred H----------------------HHhhc---ccCCCchHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHHHHHh-cc
Q 014172 325 N----------------------KIQSQ---FTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAFRERRDFLVKSF-GE 377 (429)
Q Consensus 325 ~----------------------~~~~~---~~~~~~~~~q~aa~~~l~~~~~~~~~-~~~~~~~~~~~r~~l~~~L-~~ 377 (429)
. ..... ...+++...+.++.++++. ..++ +++.+++++++++++.+.| ++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~l~~~L~~~ 300 (385)
T 2bkw_A 224 NDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE---ILEEGLHKRWDLHREMSDWFKDSLVNG 300 (385)
T ss_dssp CHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH---HHHccHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11110 0124666777777777764 2333 7788899999999999999 88
Q ss_pred CCCceeecCC-----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ |+++..++ .++++|+.++ +..+++++|.+ .||.+
T Consensus 301 ~-g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~-~gi~v 340 (385)
T 2bkw_A 301 L-QLTSVSRYPSNMSAHGLTAVYVA--------------DPPDVIAFLKS-HGVVI 340 (385)
T ss_dssp T-CCEESSCSSSTTBCSSCEEEECS--------------CHHHHHHHHHH-TTEEC
T ss_pred c-CceecccCcccccCCceEEEecC--------------CHHHHHHHHHH-CCeEE
Confidence 8 88877532 4667888885 36788888865 59876
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=247.41 Aligned_cols=314 Identities=15% Similarity=0.093 Sum_probs=212.9
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-CcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-~~i~~t~G~~~al 168 (429)
.|+.++|++.|.+ +++ .|+.+.+++.+++.+. ..|+...|..++++++++++.+.++. .. ++|++|+|+++++
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~~~~ggsea~ 117 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGATILSASNAPAVTLAERLLASFPG--EGTHKIWFGHSGSDAN 117 (439)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEEEESSHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEEEeCCHHHHH
Confidence 4678999999987 444 5899999999998764 45665677888999999999888753 33 6999999999999
Q ss_pred HHHHHHh--cCCCCEEEEcCCCCCChHHHHHHcCCE-E--------------EEecCCCCCCCCC----CHHHHHhhc--
Q 014172 169 LQAVLAV--CSPGDEVIIPAPFWVSYPEMARIADAT-P--------------VILPTRISENFLL----DPKVLESKL-- 225 (429)
Q Consensus 169 ~~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~--------------~~v~~~~~~~~~~----d~e~l~~~l-- 225 (429)
..+++++ ..+++.|++.+|+|+++...+...+.. . ..++.+.. .... |++.|++++
T Consensus 118 ~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~ 196 (439)
T 3dxv_A 118 EAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPY-RNDPTGDAILTLLTEKLAA 196 (439)
T ss_dssp HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCB-TTBTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcc-cccccHHHHHHHHHHHHHh
Confidence 9999885 335678888899887665544443322 1 22333211 0011 689999998
Q ss_pred --ccCCcEEEEcCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 226 --TEKSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 226 --~~~~~~i~l~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
.+++++|+++.++|++|.+.+ .+.+++|.++|++| |+++|+||+|.++.+.+.. ...... +.... +.||||
T Consensus 197 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DE~~~g~g~~g~~-~~~~~~-~~~~d---i~s~sK 270 (439)
T 3dxv_A 197 VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAH-GILVVCDEVKVGLARSGRL-HCFEHE-GFVPD---ILVLGK 270 (439)
T ss_dssp SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTCTTTTSSS-SGGGGT-TCCCS---EEEECG
T ss_pred cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCcCchh-hHHHhc-CCCCC---EEEEcc
Confidence 456778888888888888665 45599999999999 9999999999976544421 111111 11122 339999
Q ss_pred hcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc----cC
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG----EL 378 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~----~l 378 (429)
.++ +|+|+||+++++++++.+.......++ .+.+++.++.++|+. .++ +++.++++++++++.+.|. .+
T Consensus 271 ~~~-~G~riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~aal~~---~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (439)
T 3dxv_A 271 GLG-GGLPLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLAVLET---IDR--DDLPAMAERKGRLLRDGLSELAKRH 343 (439)
T ss_dssp GGG-TTSCCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHHHHHH---HHH--TTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhc-CCcceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999 799999999999998877665444556 788999999888874 111 2334444445554544444 34
Q ss_pred CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 ~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+...++.|.| +|+.+........ ....+..+++++|+++ ||.+
T Consensus 344 ~~~~~~~~~g~~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~-Gv~v 388 (439)
T 3dxv_A 344 PLIGDIRGRGLA-CGMELVCDRQSRE---PARAETAKLIYRAYQL-GLVV 388 (439)
T ss_dssp TTEEEEEEETTE-EEEEEEEETTTTE---ECHHHHHHHHHHHHHH-TEEC
T ss_pred CCeEEEEEEEEE-EEEEEecCccccC---CCHHHHHHHHHHHHHC-CcEE
Confidence 556666566555 6666621000000 0001367899999887 8875
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=246.20 Aligned_cols=314 Identities=12% Similarity=0.078 Sum_probs=210.9
Q ss_pred cCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..+|+..|.+ +++. |+++.+++.+.+.+..+ + ...+..+++.++++.+.+.++. ++++|++|+|+++++.
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-~-~~~~~~~~~~~l~~~la~~~~~--~~~~v~~~~gg~ea~~ 116 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-L-FSEMLSRPVVDLATRLANITPP--GLDRALLLSTGAESNE 116 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCC-C-CTTCCCHHHHHHHHHHHHHSCT--TCCEEEEESCHHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcc-c-ccccCCHHHHHHHHHHHHhCCC--CcCEEEEeCchHHHHH
Confidence 4567899987764 4444 78999999998876422 2 2233456777788888777774 5689999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChHHHHHHc--------------CCEEEEecCCCCCCC--------CCCHHHHHhhc
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA--------------DATPVILPTRISENF--------LLDPKVLESKL 225 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~--------------g~~~~~v~~~~~~~~--------~~d~e~l~~~l 225 (429)
.+++.+. ..+|.|++.+|+|+++...+... |+..+.++......+ .+|++.|++++
T Consensus 117 ~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l 196 (433)
T 1zod_A 117 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 196 (433)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHH
Confidence 9988654 23589999999998766544322 333333332111112 23699999988
Q ss_pred c----cCCcEEEEcCC-CCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEec
Q 014172 226 T----EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNG 299 (429)
Q Consensus 226 ~----~~~~~i~l~~p-~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S 299 (429)
+ +++++|+ ++| +||||. +.+++++++|.++|++| |+++|+||+|.++.+.+.. ..+.... .. ..+.|
T Consensus 197 ~~~~~~~~~~vi-~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~~~g~~g~~-~~~~~~~-~~---~di~s 269 (433)
T 1zod_A 197 DRQSSGNLAAFI-AEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTM-FACQRDG-VT---PDILT 269 (433)
T ss_dssp HHHCCSCEEEEE-ECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHHT-CC---CSEEE
T ss_pred HhcCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcCchH-hHHhhcC-CC---CCEEE
Confidence 6 3455544 556 588996 67889999999999999 9999999999987554421 1111111 11 12458
Q ss_pred cChhcccccceeeEEEcCHHHHHHHHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 300 FSKAFAMTGWRLGYIAGPKHFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 300 ~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
|||.++ .|+|+||+++++++++.+...... .+.+.+.+++.++.++|+. .++ +...++++++++++.+.|++
T Consensus 270 ~sK~~~-~G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~---~~~--~~~~~~~~~~~~~l~~~l~~ 343 (433)
T 1zod_A 270 LSKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDV---VQR--DGLVARANVMGDRLRRGLLD 343 (433)
T ss_dssp ECHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHH---HHH--TTHHHHHHHHHHHHHHHHHH
T ss_pred eccccc-CCCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHH---HHh--CCHHHHHHHHHHHHHHHHHH
Confidence 999999 599999999999999888763222 4566789999998888874 121 23456667777777777765
Q ss_pred C----CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 L----EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l----~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ +.+...++.|. |+|++++..... +.....+..+++++|+++ ||.+
T Consensus 344 l~~~~~~~~~~~~~g~-~~~i~~~~~~~~---~~~~~~~~~~~~~~l~~~-Gv~v 393 (433)
T 1zod_A 344 LMERFDCIGDVRGRGL-LLGVEIVKDRRT---KEPADGLGAKITRECMNL-GLSM 393 (433)
T ss_dssp HHHHCTTEEEEEEETT-EEEEEEEEETTT---TEECTTHHHHHHHHHHHT-TEEC
T ss_pred HHHhCCCeEEEEEEEE-EEEEEEecCccc---cCCChHHHHHHHHHHHHC-CCeE
Confidence 3 44445556555 468887531000 000001367899998865 9976
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=241.60 Aligned_cols=264 Identities=14% Similarity=0.156 Sum_probs=189.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC--EEEEcCCCCCChH---HHHHHcC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD--EVIIPAPFWVSYP---EMARIAD 200 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd--~Vlv~~p~y~~~~---~~~~~~g 200 (429)
..|++..+..+|++++++++. .+..++++|+++++..++++++.+|| .|+++.++|.... ......|
T Consensus 41 ~~y~~~~~~~~l~~~la~~~~--------~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g 112 (357)
T 3lws_A 41 DQYGTGAIIEPFEQKFADVLG--------MDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHP 112 (357)
T ss_dssp EETTEETTHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSS
T ss_pred ccccCChHHHHHHHHHHHHhC--------CCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccC
Confidence 458777788999999999874 13345557778899999999999988 6777776654332 2456779
Q ss_pred CEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCc-cCCCCHHHHHHHHHHHHhCCCeEEEEccCCccc--ccC
Q 014172 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI--IYA 277 (429)
Q Consensus 201 ~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPt-G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~--~~~ 277 (429)
++++.++. +++.+|+++|+++. ++++|++++||||| |.+++.+++++|+++|++| |++||+|++|... .+.
T Consensus 113 ~~~~~v~~---~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~-~~~li~D~a~~~~~~~~~ 186 (357)
T 3lws_A 113 IETILVGA---ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRER-GIRLHLDGARLFEMLPYY 186 (357)
T ss_dssp CEEEECSC---TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHH
T ss_pred cEEEEecC---CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHc-CCEEEEECchhhhhhhhc
Confidence 99999884 33569999999883 48999999999998 9999999999999999999 9999999998721 122
Q ss_pred CCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHHHhhcccCCC--chHHHHHHHHHHhcCCCCh
Q 014172 278 PATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQSQFTSGA--SSISQKAGVAALGLGYAGG 354 (429)
Q Consensus 278 ~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~--~~~~q~aa~~~l~~~~~~~ 354 (429)
+. +...+....+ +++.||||.+ ++.| ||+++++++++.+.+.......+. ....+.++..+|+.
T Consensus 187 ~~---~~~~~~~~~d--~~~~s~sK~~~~~~g---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 253 (357)
T 3lws_A 187 EK---TAAEIAGLFD--SIYISFYKGLGGIAG---AILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYEL----- 253 (357)
T ss_dssp TC---CHHHHHTTSS--EEEEESSSTTCCSSC---EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHH-----
T ss_pred CC---ChHHHHhcCC--EEEEeccccCCCCce---EEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHH-----
Confidence 22 1222211122 4588999999 4333 999999999999887655443332 33344444455542
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceee-cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+. .+++.++++++.+.|++++|+++. .|.+++|+|++++.... .+..++.+.|.++ ||.+
T Consensus 254 -~~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~-Gi~v 316 (357)
T 3lws_A 254 -RKDR-MGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAA---------DISPKLEQVQEET-GLGF 316 (357)
T ss_dssp -HTTC-HHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHH---------HHHHHHHHHHHHH-CEES
T ss_pred -HHHH-HHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChH---------HHHHHHHHHHHhc-CeEE
Confidence 3322 344678889999999999899883 57778889999974200 0256777777655 9976
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=242.65 Aligned_cols=323 Identities=14% Similarity=0.047 Sum_probs=220.5
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..| ...++. |+++.+++.+++.+..+.|+...+..++++++++++.+.++ .+.++|++|+|+++++.
T Consensus 48 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~ggseA~~ 125 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVFYTNSGSESVD 125 (459)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHH
Confidence 46789999988 455554 79999999999887554565556677899999999988876 35679999999999999
Q ss_pred HHHHHhcC--------CCCEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCC--C-CCCCCC--------
Q 014172 170 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA-------------TPVILPTRI--S-ENFLLD-------- 217 (429)
Q Consensus 170 ~~l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d-------- 217 (429)
.+++++++ +++.|++.+|+|+++...+...+. .+..++... . +.+ .|
T Consensus 126 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~~ 204 (459)
T 4a6r_A 126 TMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVVA 204 (459)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHHH
Confidence 99999875 579999999999998766655432 233333211 0 112 34
Q ss_pred HHHHHhhcc----cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~----~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
+++|++.+. +++++|+++.++|++|. +++++++++|.++|++| |+++|+||+|.+|.+.|.. ........ ..
T Consensus 205 ~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~gr~G~~-~~~~~~~~-~p 281 (459)
T 4a6r_A 205 ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY-DVLLVADEVICGFGRTGEW-FGHQHFGF-QP 281 (459)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SHHHHHTC-CC
T ss_pred HHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEeccccCCCccccc-chHhhcCC-CC
Confidence 788888876 23444444444555665 55899999999999999 9999999999987655531 11111111 11
Q ss_pred ceEEEeccChhcccccceeeEEEcCHHHHHHHH---HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV-KAFRERR 368 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~---~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~-~~~~~~r 368 (429)
.+.+|||.++..|+|+||+++++++++.+. ......+++.+.+++.++.++|+... .++.+++.+ +..+..+
T Consensus 282 ---di~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~ 357 (459)
T 4a6r_A 282 ---DLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALR-DEGIVQRVKDDIGPYMQ 357 (459)
T ss_dssp ---SEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHH-HTCHHHHHHHTHHHHHH
T ss_pred ---CeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHH
Confidence 144689999844499999999999999987 33344556788999999999997411 023455555 5555556
Q ss_pred HHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 369 ~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.+.|.+++.+...++.|.| +++++..... ....+.. .....++++.|+++ ||.+
T Consensus 358 ~~l~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-Gv~v 415 (459)
T 4a6r_A 358 KRWRETFSRFEHVDDVRGVGMV-QAFTLVKNKA-KRELFPDFGEIGTLCRDIFFRN-NLIM 415 (459)
T ss_dssp HHHHHHHTTCTTEEEEEEETTE-EEEEECSBTT-TTBCCSSTTHHHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHhcCCCeEEEEEEEEE-EEEEEecCcc-ccccccchHHHHHHHHHHHHHC-CeEE
Confidence 6665666666667777777765 5666643100 0000000 00156788888877 8875
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=247.33 Aligned_cols=291 Identities=12% Similarity=0.105 Sum_probs=209.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC----CCCCCC---CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh-HHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG----FTRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGA-KQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~----~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~-~~a 167 (429)
.+++++.|.+ ++|+.+++++.+.+.+. ...|+. ..+..++.+.+.+++.+.+|.+ ++++|++|+|+ +++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~~v~~~~g~gt~a 79 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEECCcchHH
Confidence 4678888865 67889999998876431 112222 2344556677777777777753 45799999999 999
Q ss_pred HHHHHHHhcCC---CCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh-hcccCCcEEEEcCCCCCccC
Q 014172 168 ILQAVLAVCSP---GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES-KLTEKSRLLILCSPSNPTGS 243 (429)
Q Consensus 168 l~~~l~~l~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~-~l~~~~~~i~l~~p~NPtG~ 243 (429)
+.+++..++.+ ||.|+++.++|..+ ..++..| +++.+++++++++ +|++++++ ++++++|+|++++|+||||.
T Consensus 80 l~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~~-~d~~~l~~~~i~~~~k~v~~~~~~nptG~ 156 (360)
T 1w23_A 80 FTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANSY-QSIPDFSEFQLNENDAYLHITSNNTIYGT 156 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGTS-CSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred HHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-CeEEeecccccCc-CCccchHhhccCCCCCEEEEeCCCCCcce
Confidence 99999999865 56777777776543 3467789 9999998753333 79999999 88889999999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
+++ ++. ++| |++||+|++|..+.. ..++..+ .++++|+||.+|++| +||+++++++++.
T Consensus 157 ~~~--~i~------~~~-~~~li~D~a~~~~~~----~~~~~~~------di~~~s~sK~~~~~G--~G~~~~~~~~~~~ 215 (360)
T 1w23_A 157 QYQ--NFP------EIN-HAPLIADMSSDILSR----PLKVNQF------GMIYAGAQKNLGPSG--VTVVIVKKDLLNT 215 (360)
T ss_dssp ECS--SCC------CCC-SSCEEEECTTTTTSS----CCCGGGC------SEEEEETTTTTSCTT--CEEEEEEHHHHCS
T ss_pred ecc--ccc------ccC-CceEEEechhhcCCC----CcCcccC------CEEEEEcccccCCCC--cEEEEEcHHHHhh
Confidence 987 222 278 999999999987431 1122221 388999999999666 8999999988765
Q ss_pred HHHHh------------hcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCc-eee-cC-
Q 014172 324 CNKIQ------------SQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMS-EP- 386 (429)
Q Consensus 324 l~~~~------------~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~-~~~-~p- 386 (429)
+.... .....+++...+.++..+++. ..+ ++++++++++++++++.+.|++++++ ... .|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 292 (360)
T 1w23_A 216 KVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW---IKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKG 292 (360)
T ss_dssp CCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGG
T ss_pred cccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCch
Confidence 54321 011234566666677777764 222 67889999999999999999998655 543 23
Q ss_pred -CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 -QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++++|++++.. .+..++.++|.+ .||.+
T Consensus 293 ~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-~gi~~ 323 (360)
T 1w23_A 293 SRSLMNVTFNLRNE-----------ELNQQFLAKAKE-QGFVG 323 (360)
T ss_dssp GBCSSEEEEECSSH-----------HHHHHHHHHHHH-TTEES
T ss_pred hccCcEEEEEcCCC-----------ccHHHHHHHHHH-CCeee
Confidence 3566899998742 145678888765 48875
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=241.10 Aligned_cols=291 Identities=12% Similarity=0.136 Sum_probs=211.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC----CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP----NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~----~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
+.+.|+.+.+. +.|+.+.+++.+.+...+..+.. ..|..+..+.+.+.+.+.+| .++++|++|+|+++++..+
T Consensus 28 ~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g--~~~~~v~~~~g~t~al~~a 104 (416)
T 1qz9_A 28 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG--ARDGEVVVTDTTSINLFKV 104 (416)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT--CCTTSEEECSCHHHHHHHH
T ss_pred CeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcC--CCcccEEEeCChhHHHHHH
Confidence 47899988876 56788999999988753222211 11223444445555555556 3568999999999999988
Q ss_pred HHHhc------CCCCE-EEEcCCCCCChHHHH----HHc--CCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 172 VLAVC------SPGDE-VIIPAPFWVSYPEMA----RIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 172 l~~l~------~~gd~-Vlv~~p~y~~~~~~~----~~~--g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
+.+++ ++||+ |+++.++|+++...+ +.. |++++.++. +++|++++++++++|++++|+
T Consensus 105 l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~~~~v~~~~~~ 175 (416)
T 1qz9_A 105 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQDTAVVMLTHVN 175 (416)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTTEEEEEEESBC
T ss_pred HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCCceEEEEeccc
Confidence 88876 89987 555556777655433 334 999999885 788889898889999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccccee-eEEEcC
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGP 317 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~ 317 (429)
||||.+++ +++|.++|++| |+++|+|++|.. +.....+.. .+..+++.|++|.++ +|+++ ||++++
T Consensus 176 nptG~~~~---l~~i~~l~~~~-~~~li~D~a~~~----g~~~~~~~~----~~~d~~~~s~~K~l~-~g~~~~g~l~~~ 242 (416)
T 1qz9_A 176 YKTGYMHD---MQALTALSHEC-GALAIWDLAHSA----GAVPVDLHQ----AGADYAIGCTYKYLN-GGPGSQAFVWVS 242 (416)
T ss_dssp TTTCBBCC---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCHHH----HTCSEEEECSSSTTC-CCTTCCCEEEEC
T ss_pred cCcccccC---HHHHHHHHHHc-CCEEEEEccccc----cCcCCChhh----cCCCEEEecCcccCC-CCCCCeEEEEEC
Confidence 99999999 89999999999 999999999974 222212222 234588999999985 78888 999999
Q ss_pred HHHHHHHHHHh-----------------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 318 KHFVAACNKIQ-----------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 318 ~~~~~~l~~~~-----------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
+++++.+.... .....+++...+.++.++++.. .++++++++++++++++++.+.
T Consensus 243 ~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 320 (416)
T 1qz9_A 243 PQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF--AQTDMASLRRKSLALTDLFIEL 320 (416)
T ss_dssp TTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHH
Confidence 88766554321 1112245666666666777641 1245788899999999999999
Q ss_pred hccC-C--CceeecCC----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 375 FGEL-E--GVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 375 L~~l-~--g~~~~~p~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++ + |+++..+. .+.++|++++ +..+++++|.++ ||.+
T Consensus 321 L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~-gi~~ 366 (416)
T 1qz9_A 321 VEQRCAAHELTLVTPREHAKRGSHVSFEHP--------------EGYAVIQALIDR-GVIG 366 (416)
T ss_dssp HHHHHTTSCCEECSCSSGGGBCSEEEEECT--------------THHHHHHHHHTT-TEEC
T ss_pred HHhhccCCCeEEeCCCCHHHcCCEEEEecC--------------CHHHHHHHHHhC-CcEe
Confidence 9885 7 88887664 2456888885 367899888765 8864
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=244.64 Aligned_cols=320 Identities=16% Similarity=0.109 Sum_probs=220.7
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..| .+.++. |+.+.+++.+++.+. ..|+...+..+++.++++++.+.++.. ..++|++|+|++++++
T Consensus 62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 139 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHF-THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTALFNSGAEAVE 139 (453)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC-SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc-cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEEEeCcHHHHHH
Confidence 47789999988 445554 899999999998764 446655677888889999988877632 2579999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCC--------------EEEEecCCC--CCCCCCC--------HHHHHh
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRI--SENFLLD--------PKVLES 223 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~--~~~~~~d--------~e~l~~ 223 (429)
.+++.... .++.|++.+++|+++...+...+. .+..++... .+.++.+ ++.|++
T Consensus 140 ~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~ 219 (453)
T 4ffc_A 140 NAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIET 219 (453)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHH
Confidence 99987653 458999999999988766554432 345555431 1112233 466777
Q ss_pred hcccCCcEEEEcCCCCCcc--CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccC
Q 014172 224 KLTEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (429)
Q Consensus 224 ~l~~~~~~i~l~~p~NPtG--~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (429)
.+.++..+++++.|+|++| .+.+++.+++|.++|++| |+++|+||+|.+|.+.|.. ...... +....+.|||
T Consensus 220 ~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~a~~~~----~~~pdi~t~s 293 (453)
T 4ffc_A 220 QIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASEN-GVVFIADEVQTGFARTGAW-FASEHE----GIVPDIVTMA 293 (453)
T ss_dssp HTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHH----TCCCSEEEEC
T ss_pred hcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecCccCCCccccc-chhhhc----CCCcchHhhh
Confidence 7766667788888888777 555788899999999999 9999999999987554431 111111 1222356799
Q ss_pred hhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 014172 302 KAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (429)
Q Consensus 302 K~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~ 381 (429)
|.++. |+|+||+++++++++.+.......+++.+.++|.++.++|+... .++.+++.++..+..++.+.+.+.+++++
T Consensus 294 K~~~~-G~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 371 (453)
T 4ffc_A 294 KGIAG-GMPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMR-ELDLPARARAIEASVTSRLSALAEEVDII 371 (453)
T ss_dssp GGGGT-TSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCSSE
T ss_pred hhhcC-CcCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCe
Confidence 99994 99999999999999888766666677889999999999987411 02334444444444455555555556656
Q ss_pred eeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 382 KMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 382 ~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
...++.|. |+|+.+....... .......++++.|+++ ||.+
T Consensus 372 ~~~~~~g~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~-Gv~v 412 (453)
T 4ffc_A 372 GEVRGRGA-MLAIEIVKPGTLE----PDAALTKSIAAEALSQ-GVLI 412 (453)
T ss_dssp EEEEEETT-EEEEEEBCTTSCC----BCHHHHHHHHHHHHHT-TEEC
T ss_pred EEEEeece-EEEEEEecCcccC----CCHHHHHHHHHHHHhC-CCEE
Confidence 55555555 4777763210000 0001366788888876 8876
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-28 Score=245.81 Aligned_cols=325 Identities=13% Similarity=0.098 Sum_probs=229.8
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCC-C------CCCCCCCHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT-R------YTPNAGTLELRSA 140 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~-~------Y~~~~G~~~lr~~ 140 (429)
++++++.+.++.+..+.....+. .+.|+|..+++. +|+.+.+++.+.+.+.+. + |+...+..++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~L~a~e~~--~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~ 94 (483)
T 1rv3_A 21 LAQPLKDSDAEVYDIIKKESNRQ----RVGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETL 94 (483)
T ss_dssp TTSCHHHHCHHHHHHHHHHHHHH----HSSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHH
T ss_pred HhhhhhhcCHHHHHHHHHHHHHh----hcCeEEEcCCCC--CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHH
Confidence 45567776665544444333322 357999888864 678999999888765321 2 3333345788888
Q ss_pred HHHHHHhhcCCCCCC--CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH--------HHHHcC--CEEEEecC
Q 014172 141 ICHKLKEENGLSYTP--DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE--------MARIAD--ATPVILPT 208 (429)
Q Consensus 141 ia~~l~~~~g~~~~~--~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g--~~~~~v~~ 208 (429)
+.+++.+.+|.+.+. .+|++++|+ +++..++.++++|||+|++++|.|.++.. .++..| .+++.+++
T Consensus 95 ~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~ 173 (483)
T 1rv3_A 95 CQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 173 (483)
T ss_dssp HHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred HHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence 999999999965322 248888888 88888899999999999999999888753 234445 56666655
Q ss_pred CCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCc-ccccCCCCCCcccc
Q 014172 209 RISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFAS 286 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~-~~~~~~~~~~~~~~ 286 (429)
++ +++.+|+++|+++++ +++|+|++ +++||+ .+++ +++|.++|++| |+++|+|++|. ++.+.+....++ .
T Consensus 174 ~~-~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~-g~~livD~ah~~g~~~~~~~~~p~-~ 245 (483)
T 1rv3_A 174 NP-DTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPF-E 245 (483)
T ss_dssp CT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGG-G
T ss_pred cc-CCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHc-CCEEEEEccchhcccccCCCCCCC-C
Confidence 54 357899999999998 79999999 999998 8888 89999999999 99999999987 344433222222 1
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEEcCHH---------------HHHHHHHHhhcc-cCCCchHHHHHHHHHHhcC
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH---------------FVAACNKIQSQF-TSGASSISQKAGVAALGLG 350 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~---------------~~~~l~~~~~~~-~~~~~~~~q~aa~~~l~~~ 350 (429)
...+++.|+||++ +|+|.||++++++ +.+.+....... ..+++.....+...++...
T Consensus 246 -----~~div~~s~~K~l--~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~ 318 (483)
T 1rv3_A 246 -----HCHVVTTTTHKTL--RGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA 318 (483)
T ss_dssp -----TCSEEEEESSGGG--CCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH
T ss_pred -----CCcEEEecCcccC--CCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHH
Confidence 2348899999987 6899999998864 334443332222 2234444444555566531
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC-ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 351 ~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
...+++++.++++++++++.+.|.++ |+++..+. .++++|++++.. + .+..++.+.| ++.||.+
T Consensus 319 --~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~v~~~~~-g---------~~~~~~~~~L-~~~gI~v 383 (483)
T 1rv3_A 319 --MTPEFKEYQRQVVANCRALSAALVEL-GYKIVTGGSDNHLILVDLRSK-G---------TDGGRAEKVL-EACSIAC 383 (483)
T ss_dssp --TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEEGGGG-T---------CCHHHHHHHH-HHTTEEC
T ss_pred --hChhHHHHHHHHHHHHHHHHHHHHhc-CCEeccCCCCCceEEEeccCC-C---------CCHHHHHHHH-HhCCcEE
Confidence 13567889999999999999999998 99887653 457789988642 1 2566666554 6679976
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-27 Score=236.39 Aligned_cols=322 Identities=11% Similarity=0.003 Sum_probs=228.5
Q ss_pred HHHHHHHHHHH-hcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC---C
Q 014172 81 VAITDQATALA-QAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP---D 156 (429)
Q Consensus 81 ~~~~~~~~~~~-~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~---~ 156 (429)
.++.+...++. ..+...+++....+ ...++.+.+++.+++.....+|...++..++++++.+++.+.+|.+.+. .
T Consensus 26 ~~v~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~ 104 (452)
T 2dgk_A 26 DVAFQIINDELYLDGNARQNLATFCQ-TWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQA 104 (452)
T ss_dssp HHHHHHHHHHGGGSCCCTTBCSCCSC-CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCC
T ss_pred HHHHHHHHHHhcCCCCCccCCCCeeC-CCchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCC
Confidence 34555555443 34433344444444 2345788888888876555667667788899999999999999964321 1
Q ss_pred cEEEecChHHHHHHHHHHhcC--------CC-----CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh
Q 014172 157 QILVSNGAKQSILQAVLAVCS--------PG-----DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 157 ~i~~t~G~~~al~~~l~~l~~--------~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
.+++|+|+++++.+++.++++ +| ++|++++ +|..+...++..|++++.+|+++ +++.+|+++|++
T Consensus 105 ~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~ 182 (452)
T 2dgk_A 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIE 182 (452)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHH
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHH
Confidence 499999999999999888764 55 5999999 99999999999999999999864 357899999999
Q ss_pred hcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh------CCCeEEEEccCCccccc---CCCCCCccccCCCCCCce
Q 014172 224 KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK------HPRLLVLSDEIYEHIIY---APATHTSFASLPGMWERT 294 (429)
Q Consensus 224 ~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~------~~~i~vi~Deay~~~~~---~~~~~~~~~~~~~~~~~~ 294 (429)
++++++++|++++|+||||.+.+ +++|.++|++ + ++++++|++|+.+.. .+..... +. ..+..
T Consensus 183 ~i~~~t~~v~~~~~~n~tG~~~~---l~~I~~ia~~~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~~~---~~-~~~~d 254 (452)
T 2dgk_A 183 ACDENTIGVVPTFGVTYTGNYEF---PQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVAPDIVWD---FR-LPRVK 254 (452)
T ss_dssp HCCTTEEEEECBBSCTTTCBBCC---HHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHCTTCCCS---TT-STTEE
T ss_pred HHhhCCEEEEEEcCCcCCcccCC---HHHHHHHHHHHhhccCC-CCcEEEEcccHHHHHHhhCccchhh---cC-CCCCc
Confidence 99999999999999999999998 8899999998 5 899999999998653 2211111 11 12445
Q ss_pred EEEeccChhcccccceeeEEEcCH-HHH-HHHHHHhhcc---------cCCC---chHHHHHHHHHHhcCCCChHHHHHH
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAGPK-HFV-AACNKIQSQF---------TSGA---SSISQKAGVAALGLGYAGGEVVSKM 360 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~~~-~~~-~~l~~~~~~~---------~~~~---~~~~q~aa~~~l~~~~~~~~~~~~~ 360 (429)
+++.|++| +++.|+++||+++.+ +++ +.+....... ..+. ..+.+.++...+. .+.++++
T Consensus 255 ~~~~~~hK-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg-----~~g~~~~ 328 (452)
T 2dgk_A 255 SISASGHK-FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG-----REGYTKV 328 (452)
T ss_dssp EEEEETTT-TTCCCSSCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred EEEECccc-ccCCCCCeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh-----HHHHHHH
Confidence 67888999 556899999999854 332 3321111110 0011 3344555554443 4567888
Q ss_pred HHHHHHHHHHHHHHhccCCCceeecC-----CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 361 VKAFRERRDFLVKSFGELEGVKMSEP-----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 361 ~~~~~~~r~~l~~~L~~l~g~~~~~p-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++.++++++.+.|++++++++..| ..++ +.++++.... ...+..++.++|.++ ||.+
T Consensus 329 ~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~-v~f~~~~~~~-------~~~~~~~l~~~L~~~-Gi~v 392 (452)
T 2dgk_A 329 QNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPA-VCFKLKDGED-------PGYTLYDLSERLRLR-GWQV 392 (452)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSE-EEEEECTTCC-------CSCCHHHHHHHHHHT-TCBC
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEE-EEEEecCccc-------ccCCHHHHHHHHHhc-CCee
Confidence 99999999999999999978888743 3444 5566653100 001457899998876 8754
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-27 Score=230.86 Aligned_cols=288 Identities=18% Similarity=0.255 Sum_probs=207.4
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVL 173 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~ 173 (429)
+++++|..|.|.++ +++.+++.+.+..+ .|+ +..+..+||+++++++. .+++++++|+++++..++.
T Consensus 22 ~~~~~l~~~~p~~~--~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~la~~~~--------~~~~i~~~~gt~al~~~l~ 89 (391)
T 3dr4_A 22 SDLPRISVAAPRLD--GNERDYVLECMDTT--WISSVGRFIVEFEKAFADYCG--------VKHAIACNNGTTALHLALV 89 (391)
T ss_dssp ------CCCCCCCC--SSHHHHHHHHHHHT--CCSSCSHHHHHHHHHHHHHHT--------CSEEEEESSHHHHHHHHHH
T ss_pred CCCceeccCCCCCC--HHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHH
Confidence 35899999998764 67888888887764 454 66788999999999974 2378999999999999999
Q ss_pred Hh-cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 174 AV-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 174 ~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
++ +++||+|+++.|+|.++...++..|++++.+++++ +++.+|++.+++++++++++|+ ++||||.+.+ +++
T Consensus 90 ~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~v~---~~n~tG~~~~---~~~ 162 (391)
T 3dr4_A 90 AMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP-RTFNLDAAKLEALITPRTKAIM---PVHLYGQICD---MDP 162 (391)
T ss_dssp HHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCGGGSGGGCCTTEEEEC---CBCGGGCCCC---HHH
T ss_pred HcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCc-cccCcCHHHHHHhcCCCceEEE---EECCCCChhh---HHH
Confidence 99 99999999999999999999999999999999875 3477999999999998888877 6789999988 899
Q ss_pred HHHHHHhCCCeEEEEccCCcccc-cCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhc
Q 014172 253 IARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ 330 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~ 330 (429)
|.++|++| |+++|+|++|.... +.+. ....+. .+.+.||||..+++|.+.||++++ +++.+.+......
T Consensus 163 i~~l~~~~-~~~li~D~a~~~g~~~~~~---~~~~~~-----di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~ 233 (391)
T 3dr4_A 163 ILEVARRH-NLLVIEDAAEAVGATYRGK---KSGSLG-----DCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQ 233 (391)
T ss_dssp HHHHHHHT-TCEEEEECTTCTTCEETTE---ETTSSS-----SEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBT
T ss_pred HHHHHHHc-CCEEEEECcccccceECCe---eecccC-----CEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhc
Confidence 99999999 99999999998633 3221 111111 277888773333455678998876 4577776655422
Q ss_pred cc--------------CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC------CceE
Q 014172 331 FT--------------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP------QGAF 390 (429)
Q Consensus 331 ~~--------------~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p------~~~~ 390 (429)
.. ...+.+. ++..... .+.+++..++.+++++++.+.|+++ |+++..+ ..++
T Consensus 234 g~~~~~~~~~~~~g~~~~~~~l~--aa~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~ 305 (391)
T 3dr4_A 234 GMDPNRRYWFPIVGFNYRMTNIQ--AAIGLAQ-----LERVDEHLAARERVVGWYEQKLARL-GNRVTKPHVALTGRHVF 305 (391)
T ss_dssp TCCTTSTTCCSSCCCBCBCCHHH--HHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHGGG-TTSEECCCCCTTSCCCC
T ss_pred CCCCCCcccccccccccCCCHHH--HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcC-CccccCcCCCCCCccee
Confidence 11 1222322 2222222 2345667777888888999999988 8777654 2232
Q ss_pred -EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 391 -YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 391 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++.++...+ .+..++.++|.++ ||.+
T Consensus 306 ~~~~i~~~~~~~---------~~~~~l~~~L~~~-GI~v 334 (391)
T 3dr4_A 306 WMYTVRLGEGLS---------TTRDQVIKDLDAL-GIES 334 (391)
T ss_dssp SSEEEEECSSCS---------SCHHHHHHHHHHT-TCCC
T ss_pred EEEEEEECCccc---------hhHHHHHHHHHHC-CCce
Confidence 34666654100 3688999998776 8875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=249.21 Aligned_cols=329 Identities=15% Similarity=0.140 Sum_probs=223.3
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC------CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP------DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICH 143 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~------~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~ 143 (429)
.|++.++++.+..+..+.+.+...|.+.++|..|.+ ++++ +.+.+++.+++..+...|++..+..+|++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~ 85 (467)
T 2oqx_A 7 FRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKN 85 (467)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHTTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHH
T ss_pred hheeeecccccccHHHHHHHHHHcCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCcceeccCchhHHHHHHHHH
Confidence 567777888776666777777777777777777764 3333 677888888776555678888888999999999
Q ss_pred HHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCC-----C----CEEEEcCCCCCChHHHHHHcCCEEEEecC----CC
Q 014172 144 KLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP-----G----DEVIIPAPFWVSYPEMARIADATPVILPT----RI 210 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~-----g----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~----~~ 210 (429)
++. .+++++|+|+++++..++++++++ | |+|++..+.|.++.......|+.++.... +.
T Consensus 86 ~~~--------~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~ 157 (467)
T 2oqx_A 86 IFG--------YQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDT 157 (467)
T ss_dssp HHC--------CSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCT
T ss_pred HhC--------cCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccC
Confidence 973 368999999999999999999888 8 99888754445556667777887765421 11
Q ss_pred C----CCCCCCHHHHHhhcc----cCCcEEEEcCCCCCc-cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc--------
Q 014172 211 S----ENFLLDPKVLESKLT----EKSRLLILCSPSNPT-GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-------- 273 (429)
Q Consensus 211 ~----~~~~~d~e~l~~~l~----~~~~~i~l~~p~NPt-G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-------- 273 (429)
. .++.+|++.|+++++ +++++|++++|+||| |.+++.+++++|.++|++| |+++|+|+++..
T Consensus 158 ~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~D~a~~~e~~~~~~~ 236 (467)
T 2oqx_A 158 GVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY-DIPVVMDSARFAENAYFIKQ 236 (467)
T ss_dssp TSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT-TCCEEEECTTHHHHHHHHHH
T ss_pred CCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHc-CCEEEEEchhhhhhhhhccc
Confidence 1 235689999999997 379999999999998 9999999999999999999 999999976643
Q ss_pred --cccCCCCCCccccCC----CCCCceEEEeccChhcccc-cceeeEEEcCHH-HHHHHHHHhhc---c----cCC-Cch
Q 014172 274 --IIYAPATHTSFASLP----GMWERTLTVNGFSKAFAMT-GWRLGYIAGPKH-FVAACNKIQSQ---F----TSG-ASS 337 (429)
Q Consensus 274 --~~~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~~~~-G~R~G~v~~~~~-~~~~l~~~~~~---~----~~~-~~~ 337 (429)
..+.+. +...+. ...+ +++.|+||.++++ | ||++++++ +++.+.++... . ..+ .+.
T Consensus 237 ~~~~~~g~---~~~~~~~~~~~~~d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (467)
T 2oqx_A 237 REAEYKDW---TIEQITRETYKYAD--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEG 308 (467)
T ss_dssp HCGGGTTS---CHHHHHHHHGGGCS--EEEEESSSTTCCSSC---EEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCH
T ss_pred ccccccCc---cHHHHhhhhhccCC--eEEEecccccCCCCc---eEEEecChhHHHHHHHHHHhhhccCCcccccchhh
Confidence 123332 222211 1122 4578999999876 4 88888766 55544433221 1 111 122
Q ss_pred HHHHHHHHHHhcCCCChHHH-HHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc-CCcccCCCCCCChHH
Q 014172 338 ISQKAGVAALGLGYAGGEVV-SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-GSEAEGFGKIENSES 415 (429)
Q Consensus 338 ~~q~aa~~~l~~~~~~~~~~-~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 415 (429)
....+....+. +++ ++..+.+.++++++.+.|+++ |+++. |.+++++|++++..+ +..... .+..+
T Consensus 309 ~~~~al~~~l~------~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 376 (467)
T 2oqx_A 309 GAMERLAVGLY------DGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ-QAGGHAAFVDAGKLLPHIPADQ----FPAQA 376 (467)
T ss_dssp HHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE-EECSSCEEEEHHHHSTTSCGGG----CHHHH
T ss_pred hHHHHHHHhhH------hhhhHHHHHHHHHHHHHHHHHHHHC-CCeee-cCCceEEEEechhhcccCCccc----ccHHH
Confidence 22222222222 122 123445567888999999888 88888 888899999985210 000000 01456
Q ss_pred HHHHHHHhCCeec
Q 014172 416 LCRYLLDKAQVLL 428 (429)
Q Consensus 416 ~~~~Ll~~~gV~v 428 (429)
++++|+++.||.+
T Consensus 377 l~~~L~~~~gv~~ 389 (467)
T 2oqx_A 377 LACELYKVAGIRA 389 (467)
T ss_dssp HHHHHHHHHCEEC
T ss_pred HHHHHHHhcCcee
Confidence 6888856669876
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=234.81 Aligned_cols=323 Identities=14% Similarity=0.116 Sum_probs=208.9
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCC-----CCCCCCHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRY-----TPNAGTLELRSAI 141 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y-----~~~~G~~~lr~~i 141 (429)
+++++..+.++....+.+..++. .+.|+|..+++.. |+.+.+++.+.+.+.+ ..| .+.....+..+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (425)
T 3ecd_A 9 FSQSLAERDASVRGAILKELERQ----QSQVELIASENIV--SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEAL 82 (425)
T ss_dssp HHCCHHHHCHHHHHHHHHHHHHH----HHSEECCTTCCCC--CHHHHHHHTSGGGSSCTTC------------CCHHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHH----hcceeeecccCCC--CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHH
Confidence 56777777777655554433322 2478998888765 8899999988774321 111 1111111233444
Q ss_pred H-HHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCC---hHHHHHHcCC--EEEEecCCCCCCCC
Q 014172 142 C-HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVS---YPEMARIADA--TPVILPTRISENFL 215 (429)
Q Consensus 142 a-~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~ 215 (429)
+ +++.+.+|. + ...++++|+++++..++.+++++||+|+++.|+|.+ +.......|. +++.++.++ +++.
T Consensus 83 a~~~~~~~~~~--~-~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 158 (425)
T 3ecd_A 83 AIERVKRLFNA--G-HANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DTML 158 (425)
T ss_dssp HHHHHHHHHTC--S-EEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TTSS
T ss_pred HHHHHHHHhCC--C-CceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-ccCc
Confidence 4 666666663 2 233458888999999999999999999999999988 3333334455 556666653 3477
Q ss_pred CCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCc-ccccCCCCCCccccCCCCCCc
Q 014172 216 LDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 216 ~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+|++.|+++++ +++++|++++|+|| ...+ +++|.++|++| |++||+||+|. ++.+.+.....+ . ..
T Consensus 159 ~d~~~l~~~i~~~~~~~v~~~~~~~~--~~~~---l~~i~~l~~~~-~~~li~De~~~~g~~~~~~~~~~~-~-----~~ 226 (425)
T 3ecd_A 159 IDYDQVEALAQQHKPSLIIAGFSAYP--RKLD---FARFRAIADSV-GAKLMVDMAHIAGVIAAGRHANPV-E-----HA 226 (425)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSCCC--SCCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTTSSCCGG-G-----TC
T ss_pred cCHHHHHHHHhhcCCcEEEEccccCC--CcCC---HHHHHHHHHHc-CCEEEEECcChHhhhhcccccCch-h-----cC
Confidence 99999999997 58999999999996 4455 88999999999 99999999964 333443222111 1 12
Q ss_pred eEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhcccC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFL 371 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l 371 (429)
.+++.||||.+ +|+|+||++++ +++.+.+......... +++...+.++..++... ..+++++++++++++++++
T Consensus 227 di~~~s~sK~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l 302 (425)
T 3ecd_A 227 HVVTSTTHKTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA--LTDDFKTYIDRVLANAQAL 302 (425)
T ss_dssp SEEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHH
Confidence 38899999998 67899999998 5677777665433322 34444444444444321 2467788999999999999
Q ss_pred HHHhccCCCceeecC-CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 372 VKSFGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 372 ~~~L~~l~g~~~~~p-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.|.+. |+++..+ .+++++|+.++.. + .+...+.+.| +++||.+
T Consensus 303 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~l-~~~gi~v 348 (425)
T 3ecd_A 303 GDVLKAG-GVDLVTGGTDNHLLLVDLRPK-G---------LKGAQVEQAL-ERAGITC 348 (425)
T ss_dssp HHHHHHT-TCEEGGGSCSSSEEEEECGGG-T---------CCHHHHHHHH-HHTTEEC
T ss_pred HHHHHhC-CCeeccCCCCceEEEEEeCCC-C---------CCHHHHHHHH-HHcCCEe
Confidence 9999986 8888754 4677788888642 0 2455666555 5569876
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=236.87 Aligned_cols=318 Identities=14% Similarity=0.086 Sum_probs=215.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++. |+++.+++.+++.+..+ .+..+..+++.++++++.+.++. ..+ |++|+|+++++.
T Consensus 47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~~--~~~-v~~~~ggseA~~ 121 (452)
T 3n5m_A 47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY--FPMSQSHEPAIKLAEKLNEWLGG--EYV-IFFSNSGSEANE 121 (452)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC--CCTTSEEHHHHHHHHHHHHHHTS--CEE-EEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC--cccccCCHHHHHHHHHHHHhCCC--Cce-EEEeCchHHHHH
Confidence 577899999884 34444 79999999999876432 33445678888888888887763 334 999999999999
Q ss_pred HHHHHhc-----C---CCCEEEEcCCCCCChHHHHHHcCCE-------------EEEecCCCCCCCCC-C---------H
Q 014172 170 QAVLAVC-----S---PGDEVIIPAPFWVSYPEMARIADAT-------------PVILPTRISENFLL-D---------P 218 (429)
Q Consensus 170 ~~l~~l~-----~---~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~-d---------~ 218 (429)
.+++.++ . ++|.|++.+|+|+++...+...+.. +..++....-.+.. | +
T Consensus 122 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (452)
T 3n5m_A 122 TAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV 201 (452)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH
Confidence 9999987 5 7899999999999887666555432 33333211000000 2 8
Q ss_pred HHHHhhcc----cCCcEEEEcCC-CCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 219 KVLESKLT----EKSRLLILCSP-SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 219 e~l~~~l~----~~~~~i~l~~p-~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
++|+++++ +++++|+++.+ +| ||.++ +++++++|.++|++| |+++|+||+|.+|.+.|.. ...... +
T Consensus 202 ~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~-~~llI~DEv~~g~g~~g~~-~~~~~~----~ 274 (452)
T 3n5m_A 202 KEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKH-GALLISDEVICGFGRTGKA-FGFMNY----D 274 (452)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGT----T
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHc-CCEEEEecchhCCCccccc-chhhhc----C
Confidence 99999887 56677777777 89 99766 888899999999999 9999999999987655432 111111 1
Q ss_pred ceEEEeccChhccccc-ceeeEEEcCHHHHHHHHH---H---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNK---I---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~---~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
....+.+|||.++. | +|+||+++++++++.+.. . ....+++.+.+++.++.++|+... .++.+++.++..+
T Consensus 275 ~~~di~t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~ 352 (452)
T 3n5m_A 275 VKPDIITMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIE-NENLIERSAQMGS 352 (452)
T ss_dssp CCCSEEEECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHH
T ss_pred CCCCEEeecccccC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 12224579999994 9 999999999999888743 1 133556789999999999887411 0233444444445
Q ss_pred HHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 366 ~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..++.+.+.+.+++++...++.|.| +++.+...... ...+. .....++++.|+++ ||.+
T Consensus 353 ~l~~~L~~~~~~~~~~~~~~~~g~~-~~i~~~~~~~~-~~~~~-~~~~~~~~~~l~~~-Gv~~ 411 (452)
T 3n5m_A 353 LLLEQLKEEIGEHPLVGDIRGKGLL-VGIELVNDKET-KEPID-NDKIASVVNACKEK-GLII 411 (452)
T ss_dssp HHHHHHHHHHTTCTTEEEEEESSSC-EEEEEEEETTT-TEECC-HHHHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEEEEEE-EEEEEecCCcc-cCCCC-HHHHHHHHHHHHHC-CcEE
Confidence 5555555555556666666677766 55655321000 00000 00135788888876 8875
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=236.71 Aligned_cols=297 Identities=13% Similarity=0.087 Sum_probs=211.6
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYT---PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~---~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
.|+.+||+..|.+ .++ .|+++.+++.+.+.+.. .++ +.....++++.++++ +| .++|++++|+++
T Consensus 74 ~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-~~~~~~~~~~~~~l~~~la~~----~g----~~~v~~~~sGse 144 (439)
T 2oat_A 74 EGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSRAFYNNVLGEYEEYITKL----FN----YHKVLPMNTGVE 144 (439)
T ss_dssp TCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-CCCTTSEESSHHHHHHHHHHH----HT----CSEEEEESSHHH
T ss_pred CCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-cccCccCCHHHHHHHHHHHHh----cC----CCEEEEeCCHHH
Confidence 4678999999875 455 68999999999886532 221 222334555555554 34 478999999999
Q ss_pred HHHHHHHHhc---------CCC-CEEEEcCCCCCChH-HHHHHcC------------CEEEEecCCCCCCCCCCHHHHHh
Q 014172 167 SILQAVLAVC---------SPG-DEVIIPAPFWVSYP-EMARIAD------------ATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 167 al~~~l~~l~---------~~g-d~Vlv~~p~y~~~~-~~~~~~g------------~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
++..++++++ .+| |.|++.+|+|+++. ..+...| ..++.+|. .|++.|++
T Consensus 145 A~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~ 217 (439)
T 2oat_A 145 AGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALER 217 (439)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHH
Confidence 9999998875 467 89999999998764 4444444 45666664 28999999
Q ss_pred hcc-cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccC
Q 014172 224 KLT-EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS 301 (429)
Q Consensus 224 ~l~-~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 301 (429)
+++ +++++|+++..+|++|. +++.+.+++|.++|++| |+++|+||+|.++.+.|.. ..+.... .... +.|||
T Consensus 218 ~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~g~~g~~-~~~~~~~-~~~D---i~t~s 291 (439)
T 2oat_A 218 ALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRW-LAVDYEN-VRPD---IVLLG 291 (439)
T ss_dssp HTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGT-CCCS---EEEEC
T ss_pred HhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCCccCCcc-hhHHHhC-CCCc---EEEec
Confidence 994 56666666555678996 56888999999999999 9999999999876554421 1111111 1111 23899
Q ss_pred hhccccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 302 KAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 302 K~~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
|.++ +| +|+||+++++++++.+.......+++.+.+++.++.++|+. .++ +++.++++++++++.+.|+++ +
T Consensus 292 K~l~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~l-~ 364 (439)
T 2oat_A 292 KALS-GGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEV---LEE--ENLAENADKLGIILRNELMKL-P 364 (439)
T ss_dssp GGGG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--TTHHHHHHHHHHHHHHHHTTS-C
T ss_pred cccc-CCCCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHH---Hhh--hhHHHHHHHHHHHHHHHHHHh-c
Confidence 9999 78 99999999999887765543445667788999988888875 222 256778888999999999887 4
Q ss_pred cee---ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 381 VKM---SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 381 ~~~---~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+.+ .++. |.|+|+.++...+ .+..+++++|+++ ||.+.
T Consensus 365 ~~~~~~~~~~-g~~~~v~l~~~~~---------~~~~~l~~~l~~~-Gv~v~ 405 (439)
T 2oat_A 365 SDVVTAVRGK-GLLNAIVIKETKD---------WDAWKVCLRLRDN-GLLAK 405 (439)
T ss_dssp TTTEEEEEEE-TTEEEEEECCCSS---------CCHHHHHHHHHHT-TEECC
T ss_pred CCCcEEEEee-eeEEEEEEecCcc---------HHHHHHHHHHHHC-CeEEe
Confidence 332 3344 4557888864200 1477999999876 99863
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=237.09 Aligned_cols=299 Identities=14% Similarity=0.096 Sum_probs=203.6
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. .+++ .++.+.+++.+.+.+.. .|+. ....+++..+++.+.+.+| .++|++|+|+++++.
T Consensus 63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~~-~~~~~~~~~l~~~la~~~g----~~~v~~~~sGseA~~ 136 (433)
T 1z7d_A 63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICSR-AFFSVPLGICERYLTNLLG----YDKVLMMNTGAEANE 136 (433)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCCT-TSEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-CccC-CcCCHHHHHHHHHHHhhcC----CCeEEEeCCHHHHHH
Confidence 467899999875 4666 68999999999886532 2221 1234556666666665555 479999999999999
Q ss_pred HHHHHhc---------CCC-CEEEEcCCCCCChHH-HHHHcC------------CEEEEecCCCCCCCCCCHHHHHhhc-
Q 014172 170 QAVLAVC---------SPG-DEVIIPAPFWVSYPE-MARIAD------------ATPVILPTRISENFLLDPKVLESKL- 225 (429)
Q Consensus 170 ~~l~~l~---------~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~e~l~~~l- 225 (429)
.+++++. .+| |.|++.+|+|.++.. .+...| ..++.+|. .|++.|++++
T Consensus 137 ~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~ 209 (433)
T 1z7d_A 137 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELK 209 (433)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 9988753 478 999999999987654 333333 24445543 2899999999
Q ss_pred ccCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 226 TEKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
++++++|+++..+|+||.+ ++.+.+++|.++|++| |+++|+||+|.++.+.+.. ..+.... .... +.||||.+
T Consensus 210 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~g~g~~g~~-~~~~~~~-~~~d---i~t~sK~l 283 (433)
T 1z7d_A 210 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGKL-LCVHHYN-VKPD---VILLGKAL 283 (433)
T ss_dssp STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGT-CCCS---EEEECGGG
T ss_pred CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc-CCEEEEecCccCCCcCCcc-hhhHhcC-CCCC---EEEECccc
Confidence 5677776666556789975 6888999999999999 9999999999876544421 1111111 1111 33899999
Q ss_pred cccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----C
Q 014172 305 AMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----E 379 (429)
Q Consensus 305 ~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~ 379 (429)
+ +| +|+||+++++++++.+.......+++.+.+++.++.++|+. .++ +++.++++++++++.+.|+++ +
T Consensus 284 ~-~G~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~ 357 (433)
T 1z7d_A 284 S-GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNV---LIN--EKLCENAEKLGGPFLENLKRELKDSK 357 (433)
T ss_dssp G-TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHH---HHH--TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CCCCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHH---HHh--ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9 89 99999999999887765543445667788999888888874 121 245666777778887777654 3
Q ss_pred CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 380 GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+...++.| .|+|+.++... .+..+++++|+++ ||.+
T Consensus 358 ~~~~~~~~g-~~~~i~~~~~~----------~~~~~~~~~l~~~-Gv~v 394 (433)
T 1z7d_A 358 IVRDVRGKG-LLCAIEFKNEL----------VNVLDICLKLKEN-GLIT 394 (433)
T ss_dssp TEEEEEEET-TEEEEEECTTT----------CCHHHHHHHHHHT-TEEC
T ss_pred CeEEEEeee-eEEEEEEccCh----------hHHHHHHHHHHHC-CeEE
Confidence 333334444 55888886410 1578899999876 9986
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=239.63 Aligned_cols=313 Identities=16% Similarity=0.132 Sum_probs=227.8
Q ss_pred HHHHHHHHHHhcCC----CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CCCCHHHHHHHHHHHHhhcCCCCC
Q 014172 82 AITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 82 ~~~~~~~~~~~~g~----~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
++.+...++...+. .++.|+ +... ...+.+.+++.+.+ ...+.|.+ .+|..++++++++++.+.+|.+.
T Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~lg-~~~~-~~~p~v~~~~~~~~-~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~- 124 (474)
T 1wyu_B 49 TLVRHYTGLSRRQVGVDTTFYPLG-SCTM-KYNPKLHEEAARLF-ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA- 124 (474)
T ss_dssp HHHHHHHHHHTTCCCTTTSCCCBT-TTCC-CCCCHHHHHHHHTT-SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-
T ss_pred HHHHHHHHHHhCCCCcccCccccc-cccc-cCCHHHHHHHHHHH-HhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc-
Confidence 45555666665543 367787 5433 22345566555542 22334443 56778999999999999888542
Q ss_pred CCcEEEecChHHHHHHHHHHh----cCCCC-----EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 155 PDQILVSNGAKQSILQAVLAV----CSPGD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l----~~~gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
.+++++|+++++..++.++ .++|| +|+++.|+|+.+...++..|++++.++++. ++.+|+++|++++
T Consensus 125 --~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i 200 (474)
T 1wyu_B 125 --ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKREL 200 (474)
T ss_dssp --EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHC
T ss_pred --eeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhh
Confidence 4678899999998766554 35887 999999999999999999999999999863 4679999999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
++++++|++++| ||||.+. +++++|+++|++| |+++|+|++|..+.++. ..... .+.++++.|+||.|+
T Consensus 201 ~~~t~~v~~~~p-n~~G~~~--~~l~~i~~l~~~~-g~~li~Dea~~~~~~g~---~~~~~----~g~di~~~s~~K~~~ 269 (474)
T 1wyu_B 201 GPHVAALMLTNP-NTLGLFE--RRILEISRLCKEA-GVQLYYDGANLNAIMGW---ARPGD----MGFDVVHLNLHKTFT 269 (474)
T ss_dssp STTEEEEEECSS-CTTSCCC--TTHHHHHHHHHHH-TCEEEEEGGGGGGTTTT---CCHHH----HTCSEEECCTTTTTC
T ss_pred CCCceEEEEECC-CCCcccC--CCHHHHHHHHHHc-CCEEEEeCchhhhhccC---CCccc----CCCcEEEEeCccccc
Confidence 989999999998 6899983 2399999999999 99999999998765421 11111 245689999999998
Q ss_pred cc-c---ceeeEEEcCHHHHHHHHH-Hh------------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 306 MT-G---WRLGYIAGPKHFVAACNK-IQ------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 306 ~~-G---~R~G~v~~~~~~~~~l~~-~~------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
++ | +|+||+++++++++.+.. .. .....+.+.+++.++..++... ..+++++..+
T Consensus 270 ~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~--g~~~l~~~~~ 347 (474)
T 1wyu_B 270 VPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL--GLEGLKKAAA 347 (474)
T ss_dssp CCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred cCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 76 5 599999999988766541 00 0012235667777777777631 2567888899
Q ss_pred HHHHHHHHHHHHhccCCCceeecCCceEE-EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 363 AFRERRDFLVKSFGELEGVKMSEPQGAFY-LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~~~~p~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.++++++.+.|+++ |+++..+...+. .|++++.. .+..+++++|+++ ||.+
T Consensus 348 ~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~-Gi~~ 401 (474)
T 1wyu_B 348 LAVLNARYLKELLKEK-GYRVPYDGPSMHEFVAQPPEG-----------FRALDLAKGLLEL-GFHP 401 (474)
T ss_dssp HHHHHHHHHHHHHHHT-TCBCSSCSSCCSCEEEBCSTT-----------CCHHHHHHHHHHT-TCCC
T ss_pred HHHHHHHHHHHHHhhc-CcEecCCCCcceEEEEEcCCC-----------CCHHHHHHHHHHC-Cccc
Confidence 9999999999999988 887743332221 45666321 3688999999877 8864
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=231.95 Aligned_cols=233 Identities=14% Similarity=0.184 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH----cCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI----ADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~ 210 (429)
...++++++++.+.+| .+++++++|+++++..++++++++||+|++++|+|.++...++. .|++++.++.+
T Consensus 80 ~p~~~~l~~~la~~~g----~~~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~- 154 (414)
T 3ndn_A 80 NPTVSVFEERLRLIEG----APAAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD- 154 (414)
T ss_dssp CHHHHHHHHHHHHHHT----CSEEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred ChHHHHHHHHHHHHHC----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-
Confidence 3455566666655555 25789999999999999999999999999999999998776644 99999999863
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
|++.|++++++++++|++++|+||||.+.+ +++|.++|++| |+++|+|++|....+.. ++ .
T Consensus 155 ------d~~~l~~ai~~~t~~v~le~p~NptG~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~~----~~-----~ 215 (414)
T 3ndn_A 155 ------DLSQWERALSVPTQAVFFETPSNPMQSLVD---IAAVTELAHAA-GAKVVLDNVFATPLLQQ----GF-----P 215 (414)
T ss_dssp ------CHHHHHHHTSSCCSEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHCC----CG-----G
T ss_pred ------CHHHHHHhcCCCCeEEEEECCCCCCCcccc---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-----h
Confidence 899999999999999999999999999998 89999999999 99999999998532211 11 1
Q ss_pred CCceEEEeccChhccccc-ceeeEEEcCHHHHH-HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA-ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~-~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r 368 (429)
.+.++++.|+||.++.+| +++||++++++.+. .+.........+.+.....++...+ +++....++..+++
T Consensus 216 ~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l-------~~l~~r~~~~~~~a 288 (414)
T 3ndn_A 216 LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGL-------ETLAIRVQHSNASA 288 (414)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHG-------GGHHHHHHHHHHHH
T ss_pred cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 345699999999999778 89999999988776 6665555555555655544444333 34556667778888
Q ss_pred HHHHHHhccCCCceee-cCC----------------ceEEEEEecCC
Q 014172 369 DFLVKSFGELEGVKMS-EPQ----------------GAFYLFIDFST 398 (429)
Q Consensus 369 ~~l~~~L~~l~g~~~~-~p~----------------~~~~~~~~l~~ 398 (429)
+.+.+.|++.|++..+ .|. .|..+++.+++
T Consensus 289 ~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~ 335 (414)
T 3ndn_A 289 QRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDC 335 (414)
T ss_dssp HHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECS
T ss_pred HHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcC
Confidence 8999999888776533 232 35568898863
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=235.46 Aligned_cols=299 Identities=15% Similarity=0.063 Sum_probs=198.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-------TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-------~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
+.+.+..+.+. .|+.+.+++.+.+.+.. ..|+.......+++...+++.+.+|. ++++|++++| ++++
T Consensus 31 ~~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~~~~v~~~sG-s~a~ 105 (420)
T 3gbx_A 31 EHIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGA--DYANVQPHSG-SQAN 105 (420)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHH
T ss_pred cceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCC--CCceeEecCc-HHHH
Confidence 35777666654 58899999988774422 12222233345555555777777774 5566666666 7899
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChH---HHHHHc--CCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYP---EMARIA--DATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~---~~~~~~--g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG 242 (429)
..++.+++++||+|+++.|+|..+. ...... +...+.++.+ .++.+|++.|++++++ ++++|++++|+||+
T Consensus 106 ~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~- 182 (420)
T 3gbx_A 106 FAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFSAYSG- 182 (420)
T ss_dssp HHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCTTCCS-
T ss_pred HHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhcCCeEEEEecCccCC-
Confidence 9999999999999999999998743 222223 3455555554 4567899999999976 69999999999974
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH---H
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---H 319 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~---~ 319 (429)
..+ +++|.++|++| |+++|+||+|....+......... ...++++.||||.++ |.+.||+++++ +
T Consensus 183 -~~~---l~~l~~l~~~~-~~~li~De~~~~~~~~~~~~~~~~-----~~~di~~~s~sK~~~--g~~gg~~~~~~~~~~ 250 (420)
T 3gbx_A 183 -VVD---WAKMREIADSI-GAYLFVDMAHVAGLIAAGVYPNPV-----PHAHVVTTTTHKTLA--GPRGGLILAKGGDEE 250 (420)
T ss_dssp -CCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHTTSSCCST-----TTSSEEEEESSGGGC--SCSCEEEEESSCCHH
T ss_pred -ccC---HHHHHHHHHHc-CCEEEEECCcchhceecccCCccc-----ccCCEEEeecccCCC--CCCceEEEEcCCcHH
Confidence 666 89999999999 999999999864333221211111 124589999999984 55669999987 7
Q ss_pred HHHHHHHHhhcccC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC-CceEEEEEecC
Q 014172 320 FVAACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFS 397 (429)
Q Consensus 320 ~~~~l~~~~~~~~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-~~~~~~~~~l~ 397 (429)
+.+.+......... +++...+.++..++... .++++++++++++++++++.+.|.+. |+++..+ ..++++|+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~ 327 (420)
T 3gbx_A 251 LYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA--MEPEFKVYQQQVAKNAKAMVEVFLNR-GYKVVSGGTENHLFLLDLV 327 (420)
T ss_dssp HHHHHHHHHC----CCCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH--HhHhHHHHHHHHHHHHHHHHHHHHhc-CCeeccCCCCCeEEEEEcC
Confidence 77777665433322 34444444544455431 24677889999999999999999985 8887653 56677888886
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.. + .+...+.+.| +++||.+
T Consensus 328 ~~-~---------~~~~~~~~~l-~~~gi~v 347 (420)
T 3gbx_A 328 DK-N---------LTGKEADAAL-GRANITV 347 (420)
T ss_dssp GG-T---------CCHHHHHHHH-HHTTEEC
T ss_pred CC-C---------CCHHHHHHHH-HHCCcEe
Confidence 42 0 2455555555 5669976
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=240.34 Aligned_cols=314 Identities=16% Similarity=0.127 Sum_probs=197.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|+..|. +.++. ||++.+++.+++.+....+.+.....+|+++++++ ++ .+++|++|+|+++++.
T Consensus 53 ~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~----~~---~~~~v~~~~sGsea~~ 125 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEA----MP---ALDKVRFVNSGTEAVM 125 (434)
T ss_dssp TCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHH----CT---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHh----CC---CCCEEEEeCchHHHHH
Confidence 577899999886 44554 89999999998876433223444444555555554 33 5689999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCE-EEEecCCCCCCCC------------CCHHHHHhhcc---cCCcE
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADAT-PVILPTRISENFL------------LDPKVLESKLT---EKSRL 231 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~------------~d~e~l~~~l~---~~~~~ 231 (429)
.+++.+.. +++.|++.+|+|+++...+...+.. ...+......+.. -|++.|+++++ +++++
T Consensus 126 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 205 (434)
T 3l44_A 126 TTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAA 205 (434)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEE
Confidence 99988765 6799999999998876544433322 1111110001000 18999999886 34555
Q ss_pred EEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccce
Q 014172 232 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (429)
Q Consensus 232 i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 310 (429)
|+++.++|++|.+. +++++++|.++|++| |+++|+||+|.+| +.+.. .....+.. ...+.||||.++ +|+|
T Consensus 206 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~illI~DEv~~g~-~~g~~-~~~~~~~~----~~di~t~sK~~~-~G~~ 277 (434)
T 3l44_A 206 ILVEPIVGNFGIVEPKPGFLEKVNELVHEA-GALVIYDEVITAF-RFMYG-GAQDLLGV----TPDLTALGKVIG-GGLP 277 (434)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHTT-TCEEEEECTTTTT-TSSSS-CHHHHHTC----CCSEEEEEGGGG-TTSS
T ss_pred EEEcCCCCCCCCccCCHHHHHHHHHHHHHc-CCEEEEeccccce-ecccc-HHHHHcCC----CCCeeehhhhhc-CCcC
Confidence 55555566667655 888999999999999 9999999999987 44421 11111111 111568999999 8999
Q ss_pred eeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCCcee
Q 014172 311 LGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEGVKM 383 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l~g~~~ 383 (429)
+||+++++++++.+... ....+++.+.+++.++.++|+.... ++ +.++++++++++.+.|++ ++.+..
T Consensus 278 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~-~~----~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 352 (434)
T 3l44_A 278 IGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ-EG----LYEKLDELGATLEKGILEQAAKHNIDIT 352 (434)
T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS-TT----HHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred eeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc-cc----HHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999998877652 2334567899999999998874211 23 334444444444444443 433344
Q ss_pred ecCCceEEEEEecCCccCCcccC--CCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSEAEG--FGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.|.| +++.+.......... ........++++.|+++ ||.+
T Consensus 353 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v 397 (434)
T 3l44_A 353 LNRLKGA-LTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQE-GVNL 397 (434)
T ss_dssp EEEETTE-EEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHT-TEEC
T ss_pred EEeeccE-EEEEEecCcccchhhccccCHHHHHHHHHHHHHC-CeEE
Confidence 4455555 666653210000000 00001236788888876 8876
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=238.41 Aligned_cols=288 Identities=11% Similarity=0.100 Sum_probs=208.2
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcC---------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC-c-EEEecCh
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREG---------FTRYTPNAGTLELRSAICHKLKEENGLSYTPD-Q-ILVSNGA 164 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~---------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~-i~~t~G~ 164 (429)
.++.+..|. .++|+.+++++.+.+.+. ..+|+ .+..++++++.+++.+.+|. +++ + +++|+|+
T Consensus 4 ~~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~g~--~~~~~~i~~t~g~ 77 (362)
T 2c0r_A 4 RAYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLALLGN--PTGYKVLFIQGGA 77 (362)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHHHTTC--CSSEEEEEESSHH
T ss_pred ceeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCCc
Confidence 356777773 567899999999876431 11121 23456788899999888885 443 5 5788999
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCCh--HHHHHHcCCEEEEecCCCC--CCCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRIS--ENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~--~~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
++++..++.+++++||+|++..+.+.+. ...++..| +++.++++.+ .+..+|.++++ +++++|+|++++|+||
T Consensus 78 t~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 78 STQFAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNETI 154 (362)
T ss_dssp HHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEETT
T ss_pred hHHHHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcCc
Confidence 9999999999999999999887664442 36677889 9999998642 23335666654 6788999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHH
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHF 320 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~ 320 (429)
||.+++ ++++| | |+++|+|++|..+. .+..+. +..+++.|+||.+|++| +||+++++++
T Consensus 155 tG~~~~--~l~~i------~-~~~vivD~a~~~~~----~~~~~~------~~d~~~~s~~K~~g~~G--~G~l~~~~~~ 213 (362)
T 2c0r_A 155 EGAQFK--AFPDT------G-SVPLIGDMSSDILS----RPFDLN------QFGLVYAGAQKNLGPSG--VTVVIVREDL 213 (362)
T ss_dssp TTEECS--SCCCC------T-TSCEEEECTTTTTS----SCCCGG------GCSEEEEETTTTTCCSS--CEEEEEEGGG
T ss_pred cceecc--ccccc------C-CCEEEEEChhhccC----Cccchh------HCcEEEEeccccccCcC--cEEEEEcHHH
Confidence 999744 25555 7 89999999998642 122222 12488889999999888 9999999887
Q ss_pred HHHHHHH------------hhcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCc-eeec
Q 014172 321 VAACNKI------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMSE 385 (429)
Q Consensus 321 ~~~l~~~------------~~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~-~~~~ 385 (429)
++.+... ......+++.+.|.++.++|+. ..+ ++++++++++++++++.+.|++++++ ++..
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 290 (362)
T 2c0r_A 214 VAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW---IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCV 290 (362)
T ss_dssp SSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESS
T ss_pred HhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCC
Confidence 6555321 1123346788888888888875 233 57889999999999999999998436 6642
Q ss_pred ---CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 ---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 ---p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..++.++++.++.. .+..+++++|.++ ||.+
T Consensus 291 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~L~~~-gi~~ 324 (362)
T 2c0r_A 291 DVDSRSDMNITFRLASE-----------ELEKEFVKASEQE-GFVG 324 (362)
T ss_dssp CGGGBCSSEEEEECSCH-----------HHHHHHHHHHHHT-TEES
T ss_pred ChHHcCCcEEEEEcCCc-----------chHHHHHHHHHHC-CCee
Confidence 12345578888642 1577899887655 8865
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-27 Score=228.58 Aligned_cols=273 Identities=16% Similarity=0.138 Sum_probs=204.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh---cCCCCEEEEc
Q 014172 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEVIIP 185 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l---~~~gd~Vlv~ 185 (429)
+|+.+.+++.+.+.++ .|++..+..+++++++++++ . +++++|+|+++++..++.++ +++||+|+++
T Consensus 11 ~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~------~--~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~ 80 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSK--QLTQGKRSLLFEEALCEFLG------V--KHALVFNSATSALLTLYRNFSEFSADRNEIITT 80 (375)
T ss_dssp CCHHHHHHHHHHHTSS--CCSSSHHHHHHHHHHHHHHT------C--SEEEEESCHHHHHHHHHHHSSCCCTTSCEEEEC
T ss_pred CCHHHHHHHHHHHHcC--cccCChHHHHHHHHHHHHhC------C--CeEEEeCCHHHHHHHHHHHhcccCCCCCEEEEC
Confidence 5788999999988653 34455567889999998873 1 28999999999999999999 8999999999
Q ss_pred CCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEE
Q 014172 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLV 265 (429)
Q Consensus 186 ~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~v 265 (429)
.|+|.++...++..|++++.+++++++ .+|++++++.+++++++|++++| ||.+.+ +++|.++|++| |+++
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~---l~~i~~l~~~~-~~~l 151 (375)
T 2fnu_A 81 PISFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSVDY---AGKSVE---VESVQKLCKKH-SLSF 151 (375)
T ss_dssp SSSCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEECG---GGCCCC---HHHHHHHHHHH-TCEE
T ss_pred CCccHhHHHHHHHCCCEEEEeccCCCC--CCCHHHHHhhcCcCceEEEEeCC---cCCccC---HHHHHHHHHHc-CCEE
Confidence 999999999999999999999986533 68999999999888998887776 999999 89999999999 9999
Q ss_pred EEccCCcccccCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEc-C-HHHHHHHHHHhhccc---------
Q 014172 266 LSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-P-KHFVAACNKIQSQFT--------- 332 (429)
Q Consensus 266 i~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~-~-~~~~~~l~~~~~~~~--------- 332 (429)
|+|++|..+..... ..+.. .+ .+.+.||| |.++. | +|++++ + +++++.+........
T Consensus 152 i~D~a~~~~~~~~~-----~~~~~-~~-~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2fnu_A 152 LSDSSHALGSEYQN-----KKVGG-FA-LASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGE 221 (375)
T ss_dssp EEECTTCTTCEETT-----EETTS-SS-SEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEE
T ss_pred EEECccccCCeECC-----eeccc-cC-CeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccc
Confidence 99999986542211 11111 12 37888888 99974 6 788876 4 678887776542111
Q ss_pred -------CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC----Cc-eEEEEEecCCcc
Q 014172 333 -------SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QG-AFYLFIDFSTYY 400 (429)
Q Consensus 333 -------~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p----~~-~~~~~~~l~~~~ 400 (429)
...+.+...++.. . .+++++..++++++++++.+.|++++|+++..+ .+ ++++|+.++..
T Consensus 222 ~~~~~~~~~~~~~~~a~~~~--~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 293 (375)
T 2fnu_A 222 VKSIGHNFRLNEIQSALGLS--Q-----LKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQK- 293 (375)
T ss_dssp ESSCCCBCCCCHHHHHHHHH--H-----HTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGG-
T ss_pred cccccccCCCCHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCcc-
Confidence 1223333222222 1 234667888889999999999999888887655 23 34457777631
Q ss_pred CCcccCCCCCC-ChHHHHHHHHHhCCeec
Q 014172 401 GSEAEGFGKIE-NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~~Ll~~~gV~v 428 (429)
+ . +..+++++|.++ ||.+
T Consensus 294 ~---------~~~~~~l~~~L~~~-gi~v 312 (375)
T 2fnu_A 294 F---------FTCKKLILESLHKR-GILA 312 (375)
T ss_dssp G---------GGGHHHHHHHHHHT-TEEC
T ss_pred c---------cchHHHHHHHHHHC-CCCc
Confidence 0 1 467889888655 9876
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=236.34 Aligned_cols=319 Identities=11% Similarity=0.038 Sum_probs=207.6
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++. |+++.+++.+++.+. ..|....+..+.++++++++.+.++ ...++|++|+|+++++.
T Consensus 42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~~~~sGseA~~ 118 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI-AHSTLLGMTNVPATQLAETLIDISP--KKLTRVFYSDSGAEAME 118 (448)
T ss_dssp TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTC-SCCCCSSSEEHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhc-cCccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCchHHHHH
Confidence 467799999874 34443 799999999998654 3344555667889999999988775 34579999999999999
Q ss_pred HHHHHhcC----CC----CEEEEcCCCCCChHHHHHHcCC-------------EEEEecCCCCCCCCC-----------C
Q 014172 170 QAVLAVCS----PG----DEVIIPAPFWVSYPEMARIADA-------------TPVILPTRISENFLL-----------D 217 (429)
Q Consensus 170 ~~l~~l~~----~g----d~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-----------d 217 (429)
.++++++. +| |+|++.+|+|+++...+...+. .+..++.. +.+.. |
T Consensus 119 ~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d 196 (448)
T 3dod_A 119 IALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQC 196 (448)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHHH
Confidence 99999865 44 9999999999887655444332 22333332 21222 4
Q ss_pred HHHHHhhcc---cCCcEEEEcCCC-CCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT---EKSRLLILCSPS-NPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~---~~~~~i~l~~p~-NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
+++|+++++ +++++|+++.++ |++| .+.+++++++|.++|++| |+++|+||+|.++.+.|... ..... +
T Consensus 197 ~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-~~~lI~DEv~~g~g~~g~~~-a~~~~----~ 270 (448)
T 3dod_A 197 LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTY-DVLMIVDEVATGFGRTGKMF-ACEHE----N 270 (448)
T ss_dssp HHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSSS-GGGGG----T
T ss_pred HHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHh-CCEEEEeccccCCCcccchh-hhhhc----C
Confidence 888998886 345566666666 8888 556788899999999999 99999999999876554321 11111 1
Q ss_pred ceEEEeccChhcccccc-eeeEEEcCHHHHHHHHH-------HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGW-RLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~-R~G~v~~~~~~~~~l~~-------~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
....+.+|||.++ .|+ |+||+++++++++.+.. .....+++.+.+++.++.++|+... .++.+++.++..
T Consensus 271 ~~~di~t~sK~l~-~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~ 348 (448)
T 3dod_A 271 VQPDLMAAGKGIT-GGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE-SENIVEQVAEKS 348 (448)
T ss_dssp CCCSEEEECGGGG-TTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred CCCCEEEeccccc-CCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 1122457999998 695 99999999999988865 3344566789999999999987411 023455555555
Q ss_pred HHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCC-ChHHHHHHHHHhCCeec
Q 014172 365 RERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE-NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~Ll~~~gV~v 428 (429)
+..++.+.+ +..++.+...++.|. |+|+.++...... ..+.... ...++++.|+++ ||.+
T Consensus 349 ~~~~~~l~~-l~~~~~~~~~~~~g~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~-Gv~~ 409 (448)
T 3dod_A 349 KKLHFLLQD-LHALPHVGDIRQLGF-MCGAELVRSKETK-EPYPADRRIGYKVSLKMREL-GMLT 409 (448)
T ss_dssp HHHHHHHHH-HTTSTTEEEEEEETT-EEEEEECSBTTTT-BCCCGGGCHHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHHH-HhcCCCeEEEEeeeE-EEEEEEccCcccc-cccchhhHHHHHHHHHHHHC-CcEE
Confidence 555666666 656655555555555 5777776421100 0000000 036899999877 8876
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=238.90 Aligned_cols=308 Identities=15% Similarity=0.051 Sum_probs=216.5
Q ss_pred cCC--CeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 93 AGV--SVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 93 ~g~--~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
.|+ .+||+..|. ..++. +|++.+++.+++.+.. .+....+..+...++++++.+.++ ...++|++|+|++++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~-~~~~~~~~~~~~~~L~e~la~~~~--~~~~~v~~~~sGseA 147 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMFGGLTHEPAARLAKLLVDITP--AGLDTVFFSDSGSVS 147 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS-CCCSSSEECHHHHHHHHHHHHHSS--TTEEEEEEESSHHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc-CccccccCCHHHHHHHHHHHHhCC--CCcCEEEEeCcHHHH
Confidence 577 899999884 55554 7899999999887632 222222344566677777766665 345799999999999
Q ss_pred HHHHHHHhcC-------CC-CEEEEcCCCCCChHHHHHHcC--------------CEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 168 ILQAVLAVCS-------PG-DEVIIPAPFWVSYPEMARIAD--------------ATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 168 l~~~l~~l~~-------~g-d~Vlv~~p~y~~~~~~~~~~g--------------~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
++.+++.++. +| +.|++.+++|.++...+...+ ..+..++.........|++.|++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 9999998865 55 589999999988765554442 1233344332221224889999988
Q ss_pred c---cCCcEEEEcC-CCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEecc
Q 014172 226 T---EKSRLLILCS-PSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (429)
Q Consensus 226 ~---~~~~~i~l~~-p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (429)
+ +++++|+++. ++||+|.++ +.+.+++|.++|++| |+++|+||+|.+|.+.|.. ..+..+.. ... +.||
T Consensus 228 ~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~-gillI~DEv~~g~gr~G~~-~a~~~~~~-~pd---iit~ 301 (457)
T 3tfu_A 228 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRY-EVLLIFDEIATGFGRTGAL-FAADHAGV-SPD---IMCV 301 (457)
T ss_dssp HHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-STHHHHTC-CCS---EEEE
T ss_pred HhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCccccch-hHhHhcCC-Cce---EEEE
Confidence 7 5677888877 899999876 777899999999999 9999999999987654432 11111111 122 3389
Q ss_pred Chhccccc-ceeeEEEcCHHHHHHHHHH-----hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 301 SKAFAMTG-WRLGYIAGPKHFVAACNKI-----QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 301 SK~~~~~G-~R~G~v~~~~~~~~~l~~~-----~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
||.++ .| +|+||+++++++++.+... ....+++.+.+++.++.++|+. .++ +...+.++++++++.+.
T Consensus 302 sK~l~-gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~---~~~--~~~~~~~~~~~~~l~~~ 375 (457)
T 3tfu_A 302 GKALT-GGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVEL---LLG--QDWRTRITELAAGLTAG 375 (457)
T ss_dssp CGGGG-TTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHH---HHT--SCHHHHHHHHHHHHHHH
T ss_pred Chhhh-CCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHH---Hhh--hHHHHHHHHHHHHHHHH
Confidence 99987 56 7999999999999988622 2334567899999999998874 111 23455566666777777
Q ss_pred hccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 375 FGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 375 L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++ +++..+++.|.| ++++++.. .+..+++++|+++ ||.+
T Consensus 376 L~~l~~~~~v~~vr~~G~~-~~i~l~~~-----------~~~~~~~~~l~~~-Gv~v 419 (457)
T 3tfu_A 376 LDTARALPAVTDVRVCGAI-GVIECDRP-----------VDLAVATPAALDR-GVWL 419 (457)
T ss_dssp HGGGGGSTTEEEEEECSSC-EEEEESSC-----------CCHHHHHHHHHHT-TEEC
T ss_pred HHHHhcCCCeeeeecCCeE-EEEEECCc-----------ccHHHHHHHHHHC-CeEE
Confidence 6654 556666666654 77788642 2578999999887 8876
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=238.41 Aligned_cols=320 Identities=15% Similarity=0.122 Sum_probs=214.0
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..| ...++. |+.+.+++.+++.+. ..|+...+..+++.++++++.+.++.. ..++|++|+|++++++
T Consensus 59 ~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~~~~sGseA~~ 136 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF-THTCFMVTPYEGYVAVCEQLNRLTPVR-GDKRSALFNSGSEAVE 136 (451)
T ss_dssp TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC-SCCTTTTSCCHHHHHHHHHHHHHSSCC-SSEEEEEESSHHHHHH
T ss_pred CCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhc-ccccCCccCCHHHHHHHHHHHHhCCcC-CCCEEEEeCcHHHHHH
Confidence 57789999988 445554 899999999998654 456655677888999999998876532 3479999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCC--------------EEEEecCCCC--------CCCC---CCHHHHH
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARIADA--------------TPVILPTRIS--------ENFL---LDPKVLE 222 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~--------~~~~---~d~e~l~ 222 (429)
.+++.... .++.|++.+++|+++...+...+. .++.++.... +... -+++.++
T Consensus 137 ~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (451)
T 3oks_A 137 NAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAI 216 (451)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHH
Confidence 99987764 448999999999988766554432 3455655310 0000 1244443
Q ss_pred hhc----ccCCcEEEEcCCCCCcc--CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEE
Q 014172 223 SKL----TEKSRLLILCSPSNPTG--SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLT 296 (429)
Q Consensus 223 ~~l----~~~~~~i~l~~p~NPtG--~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~ 296 (429)
+.+ .++..+++++.|.|++| .+.+.+.+++|.++|++| |+++|+||+|.++.+.|.. ..+..+. ....
T Consensus 217 ~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~g~~g~~-~~~~~~~----~~pd 290 (451)
T 3oks_A 217 TVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKN-DVVFIADEVQTGFARTGAM-FACEHEG----IDPD 290 (451)
T ss_dssp HHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-SGGGGGT----CCCS
T ss_pred HHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEecccCCCccccc-hhhhhcC----CCCC
Confidence 433 33556667777776665 345777899999999999 9999999999987655431 1222221 1112
Q ss_pred EeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 014172 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (429)
Q Consensus 297 ~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (429)
+.||||.++ .|+|+||+++++++++.+.......+++.+.++|.++.++|+... .++.+++.++..+..++.+.+.+.
T Consensus 291 i~t~sK~l~-~G~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~ 368 (451)
T 3oks_A 291 LIVTAKGIA-GGLPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIE-SEGLVARAQQIEKIMKDRLGRLQA 368 (451)
T ss_dssp EEEECGGGG-TTSSCEEEEEEHHHHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhh-CCcceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 448999998 599999999999999888766666677889999999999987410 022334444444444444444444
Q ss_pred cCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 377 ~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.+...++.|.| +|+.+....... .......++++.|+++ ||.+
T Consensus 369 ~~~~~~~~~~~G~~-~~~~~~~~~~~~----~~~~~~~~~~~~l~~~-Gv~v 414 (451)
T 3oks_A 369 EDDRIGDVRGRGAM-IAMELVKAGTTE----PDADLTKALCAGAHAA-GVIV 414 (451)
T ss_dssp HCTTEEEEEEETTE-EEEEEBSTTSCC----BCHHHHHHHHHHHHHT-TEEC
T ss_pred hCCCeEEEEEeeEE-EEEEEecCccCC----CCHHHHHHHHHHHHhC-CcEE
Confidence 55556555555654 667663200000 0001366788888876 8875
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=228.56 Aligned_cols=285 Identities=16% Similarity=0.232 Sum_probs=208.0
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
.++++|+.|.|++. + +.+++.+.+... .|++..+..++++++++++. .+++++++|+++++..++.+
T Consensus 6 ~~~~~l~~~~~~~~--~-~~~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~~gt~a~~~~~~~ 72 (374)
T 3uwc_A 6 VPYSYLERQFADIE--P-YLNDLREFIKTA--DFTLGAELEKFEKRFAALHN--------APHAIGVGTGTDALAMSFKM 72 (374)
T ss_dssp BCSCCHHHHTSSCH--H-HHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHTT--------CSEEEEESCHHHHHHHHHHH
T ss_pred ceeeccccCCCCch--H-HHHHHHHHHHcC--CcccChhHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHH
Confidence 35678888887754 3 888888887664 57777888999999999863 23889999999999999999
Q ss_pred h-cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHH
Q 014172 175 V-CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEI 253 (429)
Q Consensus 175 l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I 253 (429)
+ +++||+|+++.|+|.++...++..|++++.++++ +++.+|++.+++++++++++|+ |+||||.+.+ +++|
T Consensus 73 ~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~---~~~i 144 (374)
T 3uwc_A 73 LNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITDKTKAIM---PVHYTGNIAD---MPAL 144 (374)
T ss_dssp TTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHH
T ss_pred cCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCC---HHHH
Confidence 9 9999999999999999999999999999999986 4577999999999998888877 8999999998 8999
Q ss_pred HHHHHhCCCeEEEEccCCcccc-cCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEcC-HHHHHHHHHHhh
Q 014172 254 ARIVAKHPRLLVLSDEIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQS 329 (429)
Q Consensus 254 ~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~~-~~~~~~l~~~~~ 329 (429)
.++|++| |+++|+|++|..+. +++.. ...+ .++++.||| |.++.+|. .||++++ +++.+.+.....
T Consensus 145 ~~~~~~~-~~~li~D~~~~~g~~~~~~~---~~~~-----~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~ 214 (374)
T 3uwc_A 145 AKIAKKH-NLHIVEDACQTILGRINDKF---VGSW-----GQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRN 214 (374)
T ss_dssp HHHHHHT-TCEEEEECTTCTTCEETTEE---TTSS-----SSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTB
T ss_pred HHHHHHc-CCEEEEeCCCccCceeCCee---cccc-----ccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHh
Confidence 9999999 99999999998643 22211 1111 247788877 99974365 8888875 467777765542
Q ss_pred c------------ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC-ceeec-CCceEEEEEe
Q 014172 330 Q------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG-VKMSE-PQGAFYLFID 395 (429)
Q Consensus 330 ~------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g-~~~~~-p~~~~~~~~~ 395 (429)
. .....+.+...+ .... .+.+++..++.+++++.+.+.|+++++ +++.. +.++...|..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~aa~--~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (374)
T 3uwc_A 215 HGLINRDVCVEYGINCRMDTIQAVI--ANRL-----MNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHI 287 (374)
T ss_dssp TTEEETTEESSCCCBCBCCHHHHHH--HHHH-----GGGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSS
T ss_pred cCccccCccccccccCCCCHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEE
Confidence 1 111123332222 2222 233566777788888999999998866 76642 3333222221
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++-.. .+..++.++|.++ ||.+
T Consensus 288 ~~~~~----------~~~~~l~~~L~~~-gi~v 309 (374)
T 3uwc_A 288 YVLRV----------KYRDQLFQYLKDN-GIEV 309 (374)
T ss_dssp EEEEE----------TTHHHHHHHHHHT-TBCC
T ss_pred EEEEc----------CCHHHHHHHHHHC-CCcc
Confidence 11000 1577888888766 8865
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=236.63 Aligned_cols=310 Identities=15% Similarity=0.121 Sum_probs=211.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+.++|++.|. .+++. |+++.+++.+.+.+.. +... .+..++++++++.+.+.++ .++++|++|+|+++++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~~~~ggsea~ 123 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPGFQYGHPLSFQLAEKITDLTP--GNLNHVFFTDSGSECA 123 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCSSSCCCHHHHHHHHHHHTTSS--TTEEEEEEESSHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--CccccccCCHHHHHHHHHHHHhCC--CCCCEEEEcCcHHHHH
Confidence 456789998776 34544 7899999999876532 3222 3556677888888877665 3668999999999999
Q ss_pred HHHHHHhcC--------CCCEEEEcCCCCCChHH-HHHHcCC------------EEEEecCCC--CCCC-CCC-------
Q 014172 169 LQAVLAVCS--------PGDEVIIPAPFWVSYPE-MARIADA------------TPVILPTRI--SENF-LLD------- 217 (429)
Q Consensus 169 ~~~l~~l~~--------~gd~Vlv~~p~y~~~~~-~~~~~g~------------~~~~v~~~~--~~~~-~~d------- 217 (429)
..++++++. +||+|++.+|+|+++.. .+...|. .++.++.+. ..++ .+|
T Consensus 124 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~ 203 (449)
T 3a8u_X 124 LTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIA 203 (449)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHH
Confidence 999988764 67999999999987643 4554442 234444321 1111 246
Q ss_pred -HHHHHhhcc----cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCC
Q 014172 218 -PKVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW 291 (429)
Q Consensus 218 -~e~l~~~l~----~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~ 291 (429)
+++|+++++ +++++|+++..+|+||. +.+++++++|.++|++| |+++|+||+|.++.+.+.. ..+..+.. .
T Consensus 204 ~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~-~~~li~Dev~~~~g~~g~~-~~~~~~~~-~ 280 (449)
T 3a8u_X 204 LADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQH-NILLVFDEVITGFGRTGSM-FGADSFGV-T 280 (449)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SHHHHHTC-C
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHh-CCEEEEeccccCccccCcc-hhhhhcCC-C
Confidence 999999886 34555544433578996 56799999999999999 9999999999876544321 11111111 1
Q ss_pred CceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH---------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHH
Q 014172 292 ERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI---------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (429)
Q Consensus 292 ~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~---------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~ 361 (429)
.. +.||||.++ +| +|+||+++++++++.+... ....+.+.+.+++.++.++|+. .++ +++.
T Consensus 281 ~d---i~s~sK~l~-~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~---~~~--~~~~ 351 (449)
T 3a8u_X 281 PD---LMCIAKQVT-NGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCL---LQK--ENLV 351 (449)
T ss_dssp CS---EEEECGGGG-TTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHH---HHH--TTHH
T ss_pred CC---EEEEccccc-CCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHH---HHh--cCHH
Confidence 12 238999998 68 9999999999998888753 1223556788889888888874 122 2466
Q ss_pred HHHHHHHHHHHHHhccCCCc---eeecCCceEEEEEecCCccCCcccCCCCCC--ChHHHHHHHHHhCCeec
Q 014172 362 KAFRERRDFLVKSFGELEGV---KMSEPQGAFYLFIDFSTYYGSEAEGFGKIE--NSESLCRYLLDKAQVLL 428 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l~g~---~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~Ll~~~gV~v 428 (429)
++++++++++.+.|++++++ ...++ .|+|+|++++.... .. +..+++++|+++ ||.+
T Consensus 352 ~~~~~~~~~l~~~L~~l~~~~~~~~~~~-~g~~~~i~~~~~~~--------~~~~~~~~~~~~l~~~-Gv~v 413 (449)
T 3a8u_X 352 QSVAEVAPHFEKALHGIKGAKNVIDIRN-FGLAGAIQIAPRDG--------DAIVRPFEAGMALWKA-GFYV 413 (449)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTEEEEEE-ETTEEEEEECCBTT--------BSSHHHHHHHHHHHHH-TEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEee-eEEEEEEEEecCcc--------cccccHHHHHHHHHHC-CcEE
Confidence 77788888888888765322 22334 45668999874210 00 123799999876 9876
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=227.43 Aligned_cols=281 Identities=17% Similarity=0.179 Sum_probs=200.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCC--CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAG--TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPA 186 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G--~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~ 186 (429)
++++.+++.+.+.+ .|.+..| ..+++++++++++ .++|++|+|+++++..++.++ +++||+|+++.
T Consensus 11 ~~~v~~a~~~~~~~---~~~~~~g~~~~~l~~~la~~~~--------~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~ 79 (394)
T 1o69_A 11 GGNELKYIEEVFKS---NYIAPLGEFVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASS 79 (394)
T ss_dssp -CCHHHHHHHHHHH---TTTSCTTHHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEES
T ss_pred CHHHHHHHHHHHHc---CCccCCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECC
Confidence 46778888888765 3656567 7899999999973 268999999999999999999 89999999999
Q ss_pred CCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCe
Q 014172 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263 (429)
Q Consensus 187 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i 263 (429)
|+|.++...++..|++++.++++ +++.+|++.+++++++ ++++|++++ |||...+ +++|.++|++| |+
T Consensus 80 ~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~---l~~i~~l~~~~-~~ 150 (394)
T 1o69_A 80 FTFIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAK---MDEIVEICKEN-DI 150 (394)
T ss_dssp SSCGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC---HHHHHHHHHHT-TC
T ss_pred CccHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhh---HHHHHHHHHHc-CC
Confidence 99999999999999999999986 4577999999999976 789999875 8998877 99999999999 99
Q ss_pred EEEEccCCc-ccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHHHHHhhcccCC-------
Q 014172 264 LVLSDEIYE-HIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAACNKIQSQFTSG------- 334 (429)
Q Consensus 264 ~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~~~~------- 334 (429)
++|+|++|. ++.+.+... ..+ .+ +.+.||||..+++|.|+||++++ +++++.+.........+
T Consensus 151 ~li~Dea~~~g~~~~~~~~---~~~---~~--~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 222 (394)
T 1o69_A 151 VLIEDAAEALGSFYKNKAL---GTF---GE--FGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHL 222 (394)
T ss_dssp EEEEECTTCTTCEETTEET---TSS---SS--EEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCS
T ss_pred EEEEECcCcccceeCCccc---ccc---cC--cEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCcccccc
Confidence 999999999 555543211 111 12 55666754445567899999995 88888887654332111
Q ss_pred -------CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC----ceE-EEEEecCCcc--
Q 014172 335 -------ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAF-YLFIDFSTYY-- 400 (429)
Q Consensus 335 -------~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~----~~~-~~~~~l~~~~-- 400 (429)
.+.+...++...+ +++++..++++++++++.+.|+++ +++.++. +++ .+++.++...
T Consensus 223 ~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~ 293 (394)
T 1o69_A 223 DYGYNYRLSNVLGAIGVAQM-------EVLEQRVLKKREIYEWYKEFLGEY--FSFLDELENSRSNRWLSTALINFDKNE 293 (394)
T ss_dssp SCCCBCBCCHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTTEECCCSSEEEEESCCGGG
T ss_pred ccCcccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCCCcceeEEEEEEecchhhc
Confidence 1222322222222 235667788889999999999876 5554432 343 3567765210
Q ss_pred ----C----CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 401 ----G----SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 401 ----~----~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ ....+.....+..++.+.|.++ ||.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gI~v 328 (394)
T 1o69_A 294 LNACQKDINISQKNITLHPKISKLIEDLKNK-QIET 328 (394)
T ss_dssp SCCCCEEEECCCCCCCCCHHHHHHHHHHHHT-TCCC
T ss_pred cccccccccccccccccccCHHHHHHHHHHc-CCcc
Confidence 0 0000000001467888888664 8876
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-27 Score=230.96 Aligned_cols=298 Identities=13% Similarity=0.110 Sum_probs=207.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCC------CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTP------NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~------~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.+++++.+ +++ |+.+.+++.+.+.+.. ..|.. .....++++.+.+++.+.+|. +++.|++++| ++++
T Consensus 25 ~~~~~~~~-~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~--~~~~i~~~sG-t~a~ 98 (405)
T 2vi8_A 25 KIELIASE-NFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPHSG-AQAN 98 (405)
T ss_dssp SEECCTTC-CCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCCSSH-HHHH
T ss_pred ceeeccCc-ccC--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCC--CceEEEecCc-HHHH
Confidence 46666544 443 8899999988875321 22211 112345665455566666664 3334445666 9999
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHH-H--HHHcC--CEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPE-M--ARIAD--ATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~-~--~~~~g--~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG 242 (429)
..++.+++++||+|+++.|+|+.+.. . +...| .+++.+++++ +++.+|++++++++++ ++++|++ +|+|. |
T Consensus 99 ~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~ 175 (405)
T 2vi8_A 99 MAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIVA-AAAAY-P 175 (405)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-C
T ss_pred HHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-C
Confidence 99999999999999999999988753 1 12334 4888887753 3567899999999986 8888877 55553 5
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEEEcCHHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFV 321 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~ 321 (429)
...+ +++|.++|++| |+++|+||+|....+...... ..+. ...++++||||.++ +.| ||++++++++
T Consensus 176 ~~~~---l~~i~~l~~~~-~~~li~Dea~~~g~~~~~~~~--~~~~---~~di~~~s~sK~~~g~~g---G~~~~~~~~~ 243 (405)
T 2vi8_A 176 RIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGLHP--NPVP---YAHFVTTTTHKTLRGPRG---GMILCQEQFA 243 (405)
T ss_dssp SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSC--CSTT---TCSEEEEESSSTTCCCSC---EEEEECHHHH
T ss_pred ccCC---HHHHHHHHHHc-CCEEEEEccccccccccCcCC--Cccc---cCCEEEEeccccCCCCCC---eEEEEcHHHH
Confidence 5556 89999999999 999999999995433221111 1111 23388999999997 566 9999999999
Q ss_pred HHHHHHhhcccCCCchHHHH-HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC-CceEEEEEecCCc
Q 014172 322 AACNKIQSQFTSGASSISQK-AGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTY 399 (429)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~-aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-~~~~~~~~~l~~~ 399 (429)
+.+......+..+.+.+.+. ++.++++.. ..+++++++++++++++++.+.|+++ |+++..| .+++++|++++..
T Consensus 244 ~~l~~~~~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~ 320 (405)
T 2vi8_A 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHhhhcccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhC-CCeEecCCCCceEEEEEccCC
Confidence 88877655555444344444 444566531 13578899999999999999999998 8888765 4678899998742
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+ .+..++.+.|.+ +||.+
T Consensus 321 -~---------~~~~~~~~~l~~-~gi~v 338 (405)
T 2vi8_A 321 -Q---------LTGKTAEKVLDE-VGITV 338 (405)
T ss_dssp -T---------CCHHHHHHHHHH-HTEEC
T ss_pred -C---------CCHHHHHHHHHH-cCcee
Confidence 0 257788887755 58875
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=233.68 Aligned_cols=194 Identities=16% Similarity=0.190 Sum_probs=156.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCC
Q 014172 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADA 201 (429)
Q Consensus 126 ~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 201 (429)
.+| ++++..+|+++++++++ ..+.|++++| ++++..++. ++++||+|++++|+|.+.... ++..|+
T Consensus 62 ~r~-~~p~~~~l~~~la~~~g-------~~~~i~~~sG-~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~ 131 (403)
T 3cog_A 62 SRS-GNPTRNCLEKAVAALDG-------AKYCLAFASG-LAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL 131 (403)
T ss_dssp -----CHHHHHHHHHHHHHHT-------CSEEEEESCH-HHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC
T ss_pred cCC-CCchHHHHHHHHHHHhC-------CCcEEEECCH-HHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC
Confidence 344 45667899999999874 1256666665 589999998 899999999999999875443 357899
Q ss_pred EEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCC-eEEEEccCCcccccCCCC
Q 014172 202 TPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR-LLVLSDEIYEHIIYAPAT 280 (429)
Q Consensus 202 ~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~-i~vi~Deay~~~~~~~~~ 280 (429)
+++.++.+ |++.+++++++++++|++++|+||||.+++ +++|+++|++| | +++|+|++|..+.+.
T Consensus 132 ~v~~v~~~-------d~~~l~~~i~~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~-g~~~livD~~~~~~~~~--- 197 (403)
T 3cog_A 132 KISFVDCS-------KIKLLEAAITPETKLVWIETPTNPTQKVID---IEGCAHIVHKH-GDIILVVDNTFMSPYFQ--- 197 (403)
T ss_dssp EEEEECTT-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTSS-SCCEEEEECTTTCTTTC---
T ss_pred EEEEECCC-------CHHHHHHhcCcCCeEEEEECCCCCCCeeeC---HHHHHHHHHHc-CCCEEEEECCCcccccC---
Confidence 99999863 899999999999999999999999999999 99999999999 9 999999999986542
Q ss_pred CCccccCCCCCCceEEEeccChhcccccc-eeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhc
Q 014172 281 HTSFASLPGMWERTLTVNGFSKAFAMTGW-RLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 281 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
.++ . .+.++++.|+||.++.+|. |+||++++ +++++.+......++.+.+.+.+.++...++.
T Consensus 198 -~~~-~----~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 198 -RPL-A----LGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp -CTT-T----TTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred -Ccc-c----cCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 111 1 3567999999999987664 79999984 78888888777666767788888888777764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=234.45 Aligned_cols=324 Identities=13% Similarity=0.106 Sum_probs=225.7
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCCC---CCCHHHH--HHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTPN---AGTLELR--SAI 141 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~~---~G~~~lr--~~i 141 (429)
+.+++..+.++.+..+.+...+.. +.|+|..+++. .|+.+.+++.+.+.+.+ ..|... .|...++ +++
T Consensus 22 ~~~~l~~~~~~i~~~~~~~~~~~~----~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~ 95 (447)
T 3h7f_A 22 MSAPLAEVDPDIAELLAKELGRQR----DTLEMIASENF--VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENL 95 (447)
T ss_dssp GGCCHHHHCHHHHHHHHHHHHHHH----HSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHHHHHHHHHh----CceeEecCCCC--CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHH
Confidence 356667777766555544333322 47999777655 38899999988775322 223221 2555554 666
Q ss_pred H-HHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH-H--H--HHHcCCEEEEecCCCCCCCC
Q 014172 142 C-HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP-E--M--ARIADATPVILPTRISENFL 215 (429)
Q Consensus 142 a-~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~-~--~--~~~~g~~~~~v~~~~~~~~~ 215 (429)
+ +++.+.+|.+ . ..++++|+++++..++.+++++||+|++++|+|.++. . . ..-.+..++.++++++ ++.
T Consensus 96 a~~~la~~~g~~--~-~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ 171 (447)
T 3h7f_A 96 ARDRAKALFGAE--F-ANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA-THL 171 (447)
T ss_dssp HHHHHHHHHTCS--E-EECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT-TCS
T ss_pred HHHHHHHHcCCC--c-eEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcc-cCC
Confidence 6 7777777742 2 3333778889999999999999999999999998732 1 1 1223567777777643 467
Q ss_pred CCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCc-ccccCCCCCCccccCCCCCCc
Q 014172 216 LDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 216 ~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+|+++|++++. .++++|++++|+||++. + +++|.++|++| |+++|+||+|. ++.+.+... ... . ..
T Consensus 172 ~d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~---l~~i~~l~~~~-g~lli~Dea~~~g~~~~g~~~-~~~--~---~~ 239 (447)
T 3h7f_A 172 IDMDAVRATALEFRPKVIIAGWSAYPRVL--D---FAAFRSIADEV-GAKLLVDMAHFAGLVAAGLHP-SPV--P---HA 239 (447)
T ss_dssp CCHHHHHHHHHHHCCSEEEEECSSCCSCC--C---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSC-CST--T---TC
T ss_pred cCHHHHHHHHHhcCCeEEEEcCCCCCCcc--C---HHHHHHHHHHc-CCEEEEECCchhhhhcCCCCC-CCC--C---CC
Confidence 99999999985 47899999999999886 4 89999999999 99999999975 444444321 111 1 23
Q ss_pred eEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCC-CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSG-ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~-~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (429)
.+++.|+||.+ +|+|.||+++++++++.+.........+ +....+.++..++... .++++++.++++.++++++.
T Consensus 240 di~~~s~sK~l--~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~--~~~~~~~~~~~~~~~~~~l~ 315 (447)
T 3h7f_A 240 DVVSTTVHKTL--GGGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIA--ATPEFADRQRRTLSGARIIA 315 (447)
T ss_dssp SEEEEESSGGG--CCCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCcCC--CCCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHH
Confidence 48899999987 4899999999999998887765444433 3444455555555431 24567889999999999999
Q ss_pred HHhccC----CCceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 373 KSFGEL----EGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 373 ~~L~~l----~g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.|.+. +|+++.. +..++++|+++... ....+.+.+++++.||.+
T Consensus 316 ~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~GI~v 365 (447)
T 3h7f_A 316 DRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDS-----------PLDGQAAEDLLHEVGITV 365 (447)
T ss_dssp HHHTSHHHHHTTCEEGGGSCSSSEEEEECTTS-----------SCCHHHHHHHHHHTTEEC
T ss_pred HHHHhccccCCCeEEecCCCCCCEEEEEcCCC-----------CCCHHHHHHHHHHCCeEE
Confidence 999876 5787764 45667788888642 123455566677779976
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=226.75 Aligned_cols=270 Identities=20% Similarity=0.258 Sum_probs=202.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCC
Q 014172 109 TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAP 187 (429)
Q Consensus 109 ~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p 187 (429)
.++++.+++.+.+..+ .|.+..+..++++++++++. .+++++++|+++++..++.++ +++||+|+++.|
T Consensus 14 ~~~~v~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~ 83 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRHG--QYILGPEVTELEDRLADFVG--------AKYCISCANGTDALQIVQMALGVGPGDEVITPGF 83 (367)
T ss_dssp HHHHHHHHHHHHHHHC--CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESS
T ss_pred cCHHHHHHHHHHHhcC--CccCChHHHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCC
Confidence 3577888888887764 56667778899999999973 248999999999999999999 899999999999
Q ss_pred CCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEE
Q 014172 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267 (429)
Q Consensus 188 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~ 267 (429)
+|.++...++..|++++.++++++ ++.+|++.+++++++++++|+ |+||||...+ +++|.++|++| |+++|+
T Consensus 84 ~~~~~~~~~~~~G~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~---~~~i~~la~~~-~~~li~ 155 (367)
T 3nyt_A 84 TYVATAETVALLGAKPVYVDIDPR-TYNLDPQLLEAAITPRTKAII---PVSLYGQCAD---FDAINAIASKY-GIPVIE 155 (367)
T ss_dssp SCTHHHHHHHHTTCEEEEECBCTT-TCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHT-TCCBEE
T ss_pred ccHHHHHHHHHcCCEEEEEecCCc-cCCcCHHHHHHhcCcCCcEEE---eeCCccChhh---HHHHHHHHHHc-CCEEEE
Confidence 999999999999999999998753 477999999999998888877 8899999888 89999999999 999999
Q ss_pred ccCCccc-ccCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEc-CHHHHHHHHHHhhc------------c
Q 014172 268 DEIYEHI-IYAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQ------------F 331 (429)
Q Consensus 268 Deay~~~-~~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~------------~ 331 (429)
|++|+.. .+.+.. +..+ + ++.+.|| +|.++.+|. .|++++ ++++.+.+...... +
T Consensus 156 D~a~~~g~~~~~~~---~~~~----~-di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~ 226 (367)
T 3nyt_A 156 DAAQSFGASYKGKR---SCNL----S-TVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGV 226 (367)
T ss_dssp ECTTTTTCEETTEE---TTSS----S-SEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCC
T ss_pred ECccccCCeECCee---ccCC----C-CEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCc
Confidence 9999853 233321 1111 1 4888897 799985476 889888 47788877765432 2
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCce---E-EEEEecCCccCCcccC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGA---F-YLFIDFSTYYGSEAEG 406 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~---~-~~~~~l~~~~~~~~~~ 406 (429)
+...+.+...++...++. +++..++.+++++++.+.|+++ ++.+.. +.+. + ++++.++
T Consensus 227 ~~~~~~~~aa~~~~~l~~-------~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~--------- 289 (367)
T 3nyt_A 227 NSRLDTLQAAILLPKLEI-------FEEEIALRQKVAAEYDLSLKQV-GIGTPFIEVNNISVYAQYTVRMD--------- 289 (367)
T ss_dssp BCCCCHHHHHHHHHHHHT-------HHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCTTEECCCSSEEEECS---------
T ss_pred CCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccC-CeeccCCCCCCceeeEEEEEEeC---------
Confidence 344566665555555543 3455566677778888888877 554432 2221 1 1223332
Q ss_pred CCCCCChHHHHHHHHHhCCeec
Q 014172 407 FGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 407 ~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+..++.++|.++ ||.+
T Consensus 290 -----~~~~l~~~L~~~-GI~~ 305 (367)
T 3nyt_A 290 -----NRESVQASLKAA-GVPT 305 (367)
T ss_dssp -----SHHHHHHHHHHH-TCCC
T ss_pred -----CHHHHHHHHHHC-CCce
Confidence 567888888766 8865
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=225.43 Aligned_cols=217 Identities=15% Similarity=0.170 Sum_probs=172.9
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~ 205 (429)
+..+..++++++++++. .++.|++++| ++++..++++++++||.|+++.|+|.+.... ++..|++++.
T Consensus 50 ~~~~~~~l~~~la~~~~-------~~~~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 121 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEG-------GAGAVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLF 121 (386)
T ss_dssp CCHHHHHHHHHHHHHHT-------CSEEEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEE
T ss_pred CCccHHHHHHHHHHHhC-------CCcEEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEE
Confidence 44566789999998874 2256666555 8999999999999999999999999974443 4678999999
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++.+ |++.+++.+++++++|++++|+||||.+++ +++|.++|++| |+++|+||+|..+.+.. ++
T Consensus 122 ~~~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~De~~~~~~~~~----~~- 185 (386)
T 1cs1_A 122 VDQG-------DEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPALQN----PL- 185 (386)
T ss_dssp ECTT-------CHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTCC----GG-
T ss_pred eCCC-------CHHHHHHhhccCCcEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccCC----cc-
Confidence 9862 899999999989999999999999999998 89999999999 99999999999865431 11
Q ss_pred cCCCCCCceEEEeccChhccccccee-eEEEcCH-HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~-~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
. .+.++++.|+||.++.+|.|+ ||+++++ ++++.+......++.+.+.+.+.++...++. +....+.
T Consensus 186 ~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~ 254 (386)
T 1cs1_A 186 A----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMEL 254 (386)
T ss_dssp G----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHH
T ss_pred c----cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccH-------HHHHHHH
Confidence 1 356799999999999899997 9999986 8888888776655555777777776666542 3455566
Q ss_pred HHHHHHHHHHHhccCCCc
Q 014172 364 FRERRDFLVKSFGELEGV 381 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~ 381 (429)
..++++.+.+.|++++++
T Consensus 255 ~~~~~~~l~~~l~~~~~l 272 (386)
T 1cs1_A 255 AQRNAQAIVKYLQTQPLV 272 (386)
T ss_dssp HHHHHHHHHHHHTTCTTE
T ss_pred HHHHHHHHHHHHhcCCCe
Confidence 677788888888776544
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=228.08 Aligned_cols=216 Identities=16% Similarity=0.155 Sum_probs=167.7
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEE
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVI 205 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~ 205 (429)
+.+...++++.+++++ |. + +.++++++++++..++.+++++||+|+++.|+|.++...+ +..|++++.
T Consensus 63 ~~~~~~~l~~~la~~~----g~---~-~~i~~~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 63 SNPTLNLLEARMASLE----GG---E-AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp CCHHHHHHHHHHHHHH----TC---S-EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred CChHHHHHHHHHHHHh----CC---C-cEEEECCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 3344556777777665 42 2 5566666689999999999999999999999999988765 678999999
Q ss_pred ecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc
Q 014172 206 LPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA 285 (429)
Q Consensus 206 v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~ 285 (429)
++. .|++++++.+++++++|++++|+||||.+++ +++|.++|++| |+++|+|++|..+.+.. ++
T Consensus 135 ~~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~-~~~li~D~~~~~~~~~~----~~- 198 (398)
T 1gc0_A 135 VDM-------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYLQR----PL- 198 (398)
T ss_dssp ECT-------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHHCC----GG-
T ss_pred ECC-------CCHHHHHHhcCCCCeEEEEECCCCCCccccc---HHHHHHHHHHc-CCEEEEECCCcccccCC----ch-
Confidence 985 2899999999999999999999999999998 99999999999 99999999999765431 11
Q ss_pred cCCCCCCceEEEeccChhccccccee-eEEEcCHHHHH-HHHHHhhc-ccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 286 SLPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPKHFVA-ACNKIQSQ-FTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 286 ~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~~~~-~l~~~~~~-~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
. .+.++++.|+||.++.+|+|+ ||++++++.++ .+...... ++.+.+.+.+.++...++. +....+
T Consensus 199 ~----~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~ 267 (398)
T 1gc0_A 199 E----LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMD 267 (398)
T ss_dssp G----GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHH
T ss_pred h----hCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccch-------HHHHHH
Confidence 1 356699999999999999998 99999988766 55555444 4555777777777777753 334455
Q ss_pred HHHHHHHHHHHHhccCCC
Q 014172 363 AFRERRDFLVKSFGELEG 380 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g 380 (429)
...++++.+.+.|+++++
T Consensus 268 ~~~~~~~~l~~~L~~~~~ 285 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQ 285 (398)
T ss_dssp HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 556666667777766543
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-26 Score=229.45 Aligned_cols=317 Identities=14% Similarity=0.107 Sum_probs=218.4
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..| ...++. ||++.+++.+++.+..+.+ ...+..+.+.++++++.+.++. +.++|++++|+++++.
T Consensus 52 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~~~~~~~~~~~la~~l~~~~~~--~~~~v~~~~sGseA~~ 128 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS-PWYMATSPAARLAEKIATLTPG--DLNRIFFTTGGSTAVD 128 (476)
T ss_dssp TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC-TTTCBCHHHHHHHHHHHTTSST--TCCEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc-cCccCCHHHHHHHHHHHhcCCC--CcCEEEEeCchHHHHH
Confidence 57789999988 455554 8999999999987643322 2256788999999999987763 4579999999999999
Q ss_pred HHHHHhcC--------CCCEEEEcCCCCCChHHHHHHcCCE-------------EEEec--CCCCCCCCCC--------H
Q 014172 170 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADAT-------------PVILP--TRISENFLLD--------P 218 (429)
Q Consensus 170 ~~l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~--~~~~~~~~~d--------~ 218 (429)
.+++.++. .++.|++.+|+|.++...+...+.. +..++ ....+ +..| +
T Consensus 129 ~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~ 207 (476)
T 3i5t_A 129 SALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDLV 207 (476)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHHH
Confidence 99998863 3579999999999988766654332 22333 21111 1122 7
Q ss_pred HHHHhhcc----cCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccc-cCCCCCC
Q 014172 219 KVLESKLT----EKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWE 292 (429)
Q Consensus 219 e~l~~~l~----~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~-~~~~~~~ 292 (429)
++|++.+. +++++|+++.++|++|. +++++++++|.++|++| |+++|+||+|.+|.+.|.. ..+. .+.. ..
T Consensus 208 ~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~-gillI~DEv~~g~gr~G~~-~~~~~~~~v-~p 284 (476)
T 3i5t_A 208 QEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKH-DILYISDEVVTGFGRCGEW-FASEKVFGV-VP 284 (476)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHTTCC-CC
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEecccCCccccCc-eeeecccCC-Cc
Confidence 88888886 45677777877888885 88899999999999999 9999999999987655532 1222 2211 11
Q ss_pred ceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
. +.+|||.++ .| +|+||+++++++++.+... ....+++.+++++.++.++|+. .++ +++.+.+
T Consensus 285 d---i~t~sK~l~-~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~---~~~--~~~~~~~ 355 (476)
T 3i5t_A 285 D---IITFAKGVT-SGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIEL---MER--EGIVDQA 355 (476)
T ss_dssp S---EEEECGGGG-TTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHH---HHH--TTHHHHH
T ss_pred c---hhhhhhhhc-CCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHH---HHh--HHHHHHH
Confidence 2 336899998 68 9999999999999888653 2335667899999999999974 121 2445555
Q ss_pred HHHHHHHHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCC-CCChHHHHHHHHHhCCeec
Q 014172 365 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK-IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 365 ~~~r~~l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.+++.+.|++ ++.+..+++.|.| +++++...... ...+.. .....+++++|+++ ||.+
T Consensus 356 ~~~~~~l~~~L~~l~~~~~v~~v~~~G~~-~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~-Gv~v 420 (476)
T 3i5t_A 356 REMADYFAAALASLRDLPGVAETRSVGLV-GCVQCLLDPTR-ADGTAEDKAFTLKIDERCFEL-GLIV 420 (476)
T ss_dssp HHHHHHHHHHHHTTTTSTTEEEEEEETTE-EEEEECCC------CCHHHHHHHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecCce-eEEEEecCccc-cccccchhHHHHHHHHHHHHC-CCEE
Confidence 6666666666654 4556666677765 56666531000 000000 00156788888876 8875
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=225.93 Aligned_cols=217 Identities=14% Similarity=0.118 Sum_probs=175.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEec
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILP 207 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~ 207 (429)
+...+|++.+++++ | .+++++++|+++++..++.+++++||+|+++.|+|.++...+ +..|.+++.++
T Consensus 66 ~~~~~l~~~la~~~----g----~~~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~ 137 (392)
T 3qhx_A 66 PTRTALEAALAAVE----D----AAFGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVA 137 (392)
T ss_dssp HHHHHHHHHHHHHT----T----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEEC
T ss_pred hHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeC
Confidence 34456777777764 3 247899999999999999999999999999999999877666 67899999998
Q ss_pred CCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC
Q 014172 208 TRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 208 ~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
.+ |++.+++++++++++|++++|+||||.+.+ +++|.++|++| |+++|+|++|....... ++ .
T Consensus 138 ~~-------d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~-g~~li~D~~~~~~~~~~----~~-~- 200 (392)
T 3qhx_A 138 LA-------DLDAVRAAIRPTTRLIWVETPTNPLLSIAD---IAGIAQLGADS-SAKVLVDNTFASPALQQ----PL-S- 200 (392)
T ss_dssp TT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTCC----GG-G-
T ss_pred CC-------CHHHHHHhhCCCCeEEEEECCCCCCcEEec---HHHHHHHHHHc-CCEEEEECCCcccccCC----hH-H-
Confidence 63 899999999999999999999999999999 99999999999 99999999998542211 11 1
Q ss_pred CCCCCceEEEeccChhccccc-ceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 288 PGMWERTLTVNGFSKAFAMTG-WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
.+.++++.|+||.++.+| .|+||++++ +++++.+.......+.+.+.+.+.++...++. +....++..
T Consensus 201 ---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------l~~~~~~~~ 270 (392)
T 3qhx_A 201 ---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKT-------LVLRMQRHS 270 (392)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred ---hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhH-------HHHHHHHHH
Confidence 355699999999999777 799999997 68888888777767777888888777777653 334456667
Q ss_pred HHHHHHHHHhccCCCcee
Q 014172 366 ERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 366 ~~r~~l~~~L~~l~g~~~ 383 (429)
++++.+.+.|++.+++..
T Consensus 271 ~~~~~l~~~L~~~~~v~~ 288 (392)
T 3qhx_A 271 ENAAAVAEFLAEHPAIST 288 (392)
T ss_dssp HHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHhcCCCcce
Confidence 777788888888766643
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=234.48 Aligned_cols=313 Identities=12% Similarity=0.096 Sum_probs=205.3
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|+..|. +.++. |+++.+++.+++.+....+.+.....+|++++++++ + .+++|++|+|+++++.
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~----~---~~~~v~~~~~Gsea~~ 123 (429)
T 3k28_A 51 DGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERV----P---SIEIVRMVNSGTEATM 123 (429)
T ss_dssp TCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHS----T---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhC----C---CCCEEEEeCChHHHHH
Confidence 577899999887 44554 899999999998775443445555566766666654 2 4689999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCC------------CCHHHHHhhcc---cCCcE
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFL------------LDPKVLESKLT---EKSRL 231 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~------------~d~e~l~~~l~---~~~~~ 231 (429)
.+++.+.. +++.|++.+|+|+++...+.. .|..+..++.....++. -|++.++++++ +++++
T Consensus 124 ~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 203 (429)
T 3k28_A 124 SALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIAC 203 (429)
T ss_dssp HHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEE
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEE
Confidence 99988764 568999999999876543322 22211111111111100 18999999886 34555
Q ss_pred EEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccce
Q 014172 232 LILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (429)
Q Consensus 232 i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 310 (429)
|+++.++|++|.+. +++++++|.++|++| |+++|+||+|.++ +.+.. .....+ +....+.||||.++ .|+|
T Consensus 204 vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~-~~~~~~----~~~~di~t~sK~~~-~G~~ 275 (429)
T 3k28_A 204 VIVEPVAGNMGVVPPQPGFLEGLREVTEQN-GALLIFDEVMTGF-RVAYN-CGQGYY----GVTPDLTCLGKVIG-GGLP 275 (429)
T ss_dssp EEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTT-TSSTT-HHHHHH----TCCCSEEEECGGGG-TTSC
T ss_pred EEEcCCCCCCCcccCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcc-hHHHHh----CCCCceehhhhhhc-CCCC
Confidence 55555556666555 678899999999999 9999999999987 54421 111111 11122457999998 6999
Q ss_pred eeEEEcCHHHHHHHHHHh---hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CCcee
Q 014172 311 LGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EGVKM 383 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~~---~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g~~~ 383 (429)
+||+++++++++.+.... ...+++.+.+++.++.++|+. .+ +++.+.++++++++.+.|+++ +.+..
T Consensus 276 iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~---~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 349 (429)
T 3k28_A 276 VGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQ---LT---PESYVEFERKAEMLEAGLRKAAEKHGIPHH 349 (429)
T ss_dssp CEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHT---CC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Confidence 999999999988775432 233567899999999999986 22 466677777777777777653 44444
Q ss_pred ecCCceEEEEEecCCccCCc--ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 SEPQGAFYLFIDFSTYYGSE--AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.|.| +++.+....... ...........+++++|+++ ||.+
T Consensus 350 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v 394 (429)
T 3k28_A 350 INRAGSM-IGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQ-GVFL 394 (429)
T ss_dssp EEEETTE-EEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHT-TEEC
T ss_pred EEeeccE-EEEEEecCCcccccccccccHHHHHHHHHHHHHC-CeEE
Confidence 5555655 556553210000 00000001246888888876 8876
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=231.00 Aligned_cols=319 Identities=13% Similarity=0.095 Sum_probs=215.3
Q ss_pred cCCCeEEcCCC--CCCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAG--EPDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g--~~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..| ...++. ||.+.+++.+++.+..+.|+...+..+.+.++++++.+..+ .+.++|++++|+++++.
T Consensus 53 ~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~~~~sGseA~~ 130 (472)
T 3hmu_A 53 EGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVFFAGGGSEAND 130 (472)
T ss_dssp TCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCC--CCCCEEEEeCCHHHHHH
Confidence 57789999988 455554 79999999999887544555555567788888888887765 35679999999999999
Q ss_pred HHHHHhcC--------CCCEEEEcCCCCCChHHHHHHcCC------------EEEEecCCC--C-CCCCCC--------H
Q 014172 170 QAVLAVCS--------PGDEVIIPAPFWVSYPEMARIADA------------TPVILPTRI--S-ENFLLD--------P 218 (429)
Q Consensus 170 ~~l~~l~~--------~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~--~-~~~~~d--------~ 218 (429)
.+++.+.. +++.|++.+|+|.++...+...+. .++.++... . +++ .| +
T Consensus 131 ~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~~ 209 (472)
T 3hmu_A 131 TNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLARA 209 (472)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHHH
Confidence 99999874 468999999999998766655543 244454321 0 111 24 7
Q ss_pred HHHHhhcc----cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc
Q 014172 219 KVLESKLT----EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~----~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+.|++.++ +++++|+++.++|++|.+. +++.+++|.++|++| |+++|+||+|.+|.+.|.. .....+.. ...
T Consensus 210 ~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~-gillI~DEv~~gfgr~G~~-~a~~~~~v-~pd 286 (472)
T 3hmu_A 210 RELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKY-DILLIADEVICGFGRTGNW-FGTQTMGI-RPH 286 (472)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-CHHHHHTC-CCS
T ss_pred HHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHc-CCEEEEEccccCCcccCcc-chhHHhCC-CCc
Confidence 88888876 3456666666677888755 888999999999999 9999999999987555431 11111111 111
Q ss_pred eEEEeccChhcccccceeeEEEcCHHHHHHHHH--HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH-HHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK--IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR-ERRDF 370 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~--~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~-~~r~~ 370 (429)
+.+|||.++..|+|+||+++++++++.+.. .....+++.+.+++.++.++|+. .++ +.+.+.++ ++.++
T Consensus 287 ---i~t~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~---~~~--~~~~~~~~~~~~~~ 358 (472)
T 3hmu_A 287 ---IMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRI---LEE--ENILDHVRNVAAPY 358 (472)
T ss_dssp ---EEEECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHH---HHH--TTHHHHHHHTHHHH
T ss_pred ---eeeechhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHH---HHH--hHHHHHHHHHHHHH
Confidence 346899998445999999999999998832 12334567889999999999874 111 23444444 55555
Q ss_pred HHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCCCC--CCChHHHHHHHHHhCCeec
Q 014172 371 LVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK--IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 371 l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.|++ ++++..+++.|.| +++.+..... ....+.. .....++++.|+++ ||.+
T Consensus 359 l~~~L~~l~~~~~v~~vr~~G~~-~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-Gv~v 418 (472)
T 3hmu_A 359 LKEKWEALTDHPLVGEAKIVGMM-ASIALTPNKA-SRAKFASEPGTIGYICRERCFAN-NLIM 418 (472)
T ss_dssp HHHHHHGGGGSTTEEEEEEETTE-EEEEECSCGG-GTCCBSSCTTHHHHHHHHHHHHT-TBCC
T ss_pred HHHHHHHHhcCCCeEEEEecCce-EEEEEecCcc-ccccccchhHHHHHHHHHHHHHC-CcEE
Confidence 5555544 4556666777766 5555542100 0000000 00156788888876 8875
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=234.46 Aligned_cols=296 Identities=11% Similarity=0.058 Sum_probs=207.2
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHH----cCCC----CCCCC-CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIR----EGFT----RYTPN-AGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~----~~~~----~Y~~~-~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
++.|.|+.+.... .|+.+.+++.+.+. .+.. .|.+. .-..++++.+++++ | .++++|++|+|++
T Consensus 66 ~~~iyld~~~~g~-~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~----g--~~~~~v~~t~g~t 138 (465)
T 3e9k_A 66 ENAIYFLGNSLGL-QPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIV----G--ANEKEIALMNALT 138 (465)
T ss_dssp CBCEECBTTTSCC-EETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHH----T--CCGGGEEECSCHH
T ss_pred CCeEEecCCccCC-ChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHc----C--CCcCCEEEECCHH
Confidence 4688998876542 34445444444332 1111 12111 12244666666554 5 4578999999999
Q ss_pred HHHHHHHHHhcCCCCE---EEEcCCCCCChHH----HHHHcCCEEE-----EecCCCCCCCCCCHHHHHhhcc---cCCc
Q 014172 166 QSILQAVLAVCSPGDE---VIIPAPFWVSYPE----MARIADATPV-----ILPTRISENFLLDPKVLESKLT---EKSR 230 (429)
Q Consensus 166 ~al~~~l~~l~~~gd~---Vlv~~p~y~~~~~----~~~~~g~~~~-----~v~~~~~~~~~~d~e~l~~~l~---~~~~ 230 (429)
+++++++.+++++||. |+++.|+|+++.. .++..|++++ .++. ++++.+|+++|+++++ ++++
T Consensus 139 ~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~--~~~~~~d~~~l~~~i~~~~~~~~ 216 (465)
T 3e9k_A 139 VNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPR--EGEETLRIEDILEVIEKEGDSIA 216 (465)
T ss_dssp HHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCC--TTCSSCCHHHHHHHHHHHGGGEE
T ss_pred HHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecC--CCCCccCHHHHHHHHHhcCCCeE
Confidence 9999999999877654 9999999998544 6677898852 3343 2456789999999996 6789
Q ss_pred EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccce
Q 014172 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWR 310 (429)
Q Consensus 231 ~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R 310 (429)
+|++++|+||||.+++ +++|.++|++| |++||+|++|+. +..+..+.. .+.+++++|++|.++....+
T Consensus 217 lv~~~~~~n~tG~~~~---l~~i~~la~~~-g~~vi~D~a~~~----g~~~~~~~~----~~~D~~~~s~~K~l~~gp~~ 284 (465)
T 3e9k_A 217 VILFSGVHFYTGQHFN---IPAITKAGQAK-GCYVGFDLAHAV----GNVELYLHD----WGVDFACWCSYKYLNAGAGG 284 (465)
T ss_dssp EEEEESBCTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHH----HTCCEEEECSSSTTCCCTTC
T ss_pred EEEEeCcccCcceeec---HHHHHHHHHHc-CCEEEEEhhhhc----CCcCCchhh----cCCCEEEECcccccccCCCc
Confidence 9999999999999999 89999999999 999999999975 222222222 34568999999999422336
Q ss_pred eeEEEcCHHHHHHHHHHhhc-------------------------ccCCCchHHHHHHHHHHhcCCCChHH-HHHHHHHH
Q 014172 311 LGYIAGPKHFVAACNKIQSQ-------------------------FTSGASSISQKAGVAALGLGYAGGEV-VSKMVKAF 364 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~~~~-------------------------~~~~~~~~~q~aa~~~l~~~~~~~~~-~~~~~~~~ 364 (429)
+|++++++++++.+...... ...+++.+...++.++++. ..++ ++++++++
T Consensus 285 ~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~---~~~~~~~~~~~~~ 361 (465)
T 3e9k_A 285 IAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEI---FKQATMKALRKKS 361 (465)
T ss_dssp CCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHH---HHHHCHHHHHHHH
T ss_pred eEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHH---HHHcCHHHHHHHH
Confidence 89999988876544311100 0114566666666666664 2333 78899999
Q ss_pred HHHHHHHHHHhccC----------CCceeecCC----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 365 RERRDFLVKSFGEL----------EGVKMSEPQ----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 365 ~~~r~~l~~~L~~l----------~g~~~~~p~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++++++.+.|+++ +|+++..|. .|.++++.++. +..+++++|.++ ||.+
T Consensus 362 ~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~-------------~~~~l~~~L~~~-Gi~v 425 (465)
T 3e9k_A 362 VLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV-------------PNKDVFQELEKR-GVVC 425 (465)
T ss_dssp HHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC-------------TTCCHHHHHHTT-TEEC
T ss_pred HHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC-------------CHHHHHHHHHHC-CEEE
Confidence 99999999999885 688888765 25567788762 456788888766 8875
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=230.75 Aligned_cols=305 Identities=13% Similarity=0.106 Sum_probs=196.1
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+|||+.|.+ +++ .|+.+.+++.+.+..+. .| .+..++++++++++.+.++ .+++|++|+|+++++.
T Consensus 55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~-~~---~~~~~~~~~la~~l~~~~~---~~~~v~~~~gg~eA~~ 127 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV-QY---AASHPLEVRWAERIVAAFP---SIRKLRFTGSGTETTL 127 (453)
T ss_dssp TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC-SS---CSSCHHHHHHHHHHHHHCT---TCSEEEEESCHHHHHH
T ss_pred CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC-CC---CCCCHHHHHHHHHHHhhCC---CCCEEEEeCCHHHHHH
Confidence 4667899999873 333 47899999999886532 33 2467899999999988765 5689999999999999
Q ss_pred HHHHH---hcCCCCEEEEcCCCCCChHHHHHH-----------cCCE------EEEecCCCCCCCCCCHHHHHhhcc---
Q 014172 170 QAVLA---VCSPGDEVIIPAPFWVSYPEMARI-----------ADAT------PVILPTRISENFLLDPKVLESKLT--- 226 (429)
Q Consensus 170 ~~l~~---l~~~gd~Vlv~~p~y~~~~~~~~~-----------~g~~------~~~v~~~~~~~~~~d~e~l~~~l~--- 226 (429)
.++++ +.++ +.|++.+|+|+++...+.. .|+. ++.++. .|++.|+++++
T Consensus 128 ~al~~ar~~~~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~ 199 (453)
T 2cy8_A 128 LALRVARAFTGR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHG 199 (453)
T ss_dssp HHHHHHHHHHCC-CEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHHG
T ss_pred HHHHHHHHhhCC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcC
Confidence 99988 6654 6788888999876553322 1221 223332 38999999887
Q ss_pred cCCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc
Q 014172 227 EKSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 305 (429)
+++++|+++..+||||.++ +++++++|.++|++| |+++|+||+|.++ +.+. ...+..+.. ... +.||||.++
T Consensus 200 ~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~-~~g~-~~~~~~~~~-~~d---i~s~sK~l~ 272 (453)
T 2cy8_A 200 SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQY-GALFILDEVISGF-RVGN-HGMQALLDV-QPD---LTCLAKASA 272 (453)
T ss_dssp GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHT-TCEEEEECTTTTT-TTCT-THHHHHHTC-CCS---EEEEEGGGG
T ss_pred CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecCcccc-ccCc-hhhhHHhCC-CCc---EEEEChhhh
Confidence 3556655444457899765 799999999999999 9999999999987 4332 111111111 111 348999999
Q ss_pred cccceeeEEEcCHHHHHHHHH-----HhhcccCCCchHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhccC-
Q 014172 306 MTGWRLGYIAGPKHFVAACNK-----IQSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGEL- 378 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~-----~~~~~~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~l- 378 (429)
+|+|+||+++++++++.+.. .....+++.+.+++.++.++|+. . .+++.++++++++++.+.|+++
T Consensus 273 -~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~------~~~~~~~~~~~~~~l~~~L~~~~ 345 (453)
T 2cy8_A 273 -GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL------EDDVCAKINDLGQFAREAMNHLF 345 (453)
T ss_dssp -TTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH------HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999998877654 11223456788889888888863 1 1234556666777777776653
Q ss_pred ---CCceeecCCceEEEEEecCC-----c--cCCcccCCC-CCCChHHHHHHHHHhCCeec
Q 014172 379 ---EGVKMSEPQGAFYLFIDFST-----Y--YGSEAEGFG-KIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 ---~g~~~~~p~~~~~~~~~l~~-----~--~~~~~~~~~-~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.....++.|. |+|++++. . ......... ...+..+++++|+++ ||.+
T Consensus 346 ~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gv~v 404 (453)
T 2cy8_A 346 ARKGLNWLAYGRFS-GFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILE-GVDI 404 (453)
T ss_dssp HHTTCCEEEECCTT-EEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHT-TEEC
T ss_pred hhCCCcEEEEEeee-EEEEEEeccccccccccccccccccccHHHHHHHHHHHHHC-CeEE
Confidence 22233445554 58888863 0 000000000 001256899998875 9875
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=219.15 Aligned_cols=185 Identities=14% Similarity=0.119 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEecCCCC
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRIS 211 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~ 211 (429)
+|+++++++++ . ++.+ +++++++++..++.+++++||+|+++.|+|.++...+ +..|++++.++.
T Consensus 2 ~l~~~la~~~g------~-~~~i-~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--- 70 (331)
T 1pff_A 2 ALEGKIAKLEH------A-EACA-ATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM--- 70 (331)
T ss_dssp HHHHHHHHHHT------C-SEEE-EESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT---
T ss_pred hHHHHHHHHhC------C-CeEE-EeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC---
Confidence 57888888873 2 2444 4555589999999999999999999999999987665 458999999985
Q ss_pred CCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh-CCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK-HPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~-~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
.|++.+++.+++++++|++++|+||||.+++ +++|.++|++ | |+++|+|++|..+.+.. ++ .
T Consensus 71 ----~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~-~~~li~D~a~~~~~~~~----~~-----~ 133 (331)
T 1pff_A 71 ----AVPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPILTN----PL-----D 133 (331)
T ss_dssp ----TSTTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHHCC----GG-----G
T ss_pred ----CCHHHHHHhhcCCCeEEEEECCCCCcCcccC---HHHHHHHHhhhc-CCEEEEECCCcccccCC----hh-----h
Confidence 3789999999989999999999999999998 9999999999 9 99999999998754421 11 1
Q ss_pred CCceEEEeccChhcccccce-eeEEEcCH-HHHHHHHHHhhc-ccCCCchHHHHHHHHHHh
Q 014172 291 WERTLTVNGFSKAFAMTGWR-LGYIAGPK-HFVAACNKIQSQ-FTSGASSISQKAGVAALG 348 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~R-~G~v~~~~-~~~~~l~~~~~~-~~~~~~~~~q~aa~~~l~ 348 (429)
.+.++++.|+||.++.+|.| +||+++++ ++++.+...... ++.+.+.+.+.++...++
T Consensus 134 ~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (331)
T 1pff_A 134 LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTL 194 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcc
Confidence 36779999999999989999 89999998 899888876665 555677778777666665
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-25 Score=218.89 Aligned_cols=241 Identities=18% Similarity=0.183 Sum_probs=176.4
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCCC--CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTPN--AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVI 183 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~~--~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vl 183 (429)
+++.|+.+.+++. ....+.|+.. ....++++.+++++ | .+++++|+|+++++..++.+++++||+|+
T Consensus 31 ~~~~~~~~~~~~~---~~~~~~y~~~~~~~~~~l~~~la~~~----g----~~~~~~~~~gt~a~~~al~~l~~~gd~vi 99 (412)
T 2cb1_A 31 GFKTLEEGQERFA---TGEGYVYARQKDPTAKALEERLKALE----G----ALEAVVLASGQAATFAALLALLRPGDEVV 99 (412)
T ss_dssp CCSSHHHHHHHHH---HCCSCSBTTTCCHHHHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTCCTTCEEE
T ss_pred ecCChHHHHHHhc---cccCcCcCCCCChHHHHHHHHHHHHh----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 3455666666653 3344566543 34567777777775 3 24899999999999999999999999999
Q ss_pred EcCCCCCChHHH----HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh
Q 014172 184 IPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259 (429)
Q Consensus 184 v~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~ 259 (429)
++.|+|.++... ++..|++++.++. |+++|++++++++++|++++|+||||.+++ +++|.++|++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~ 168 (412)
T 2cb1_A 100 AAKGLFGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSAKTRAVFVETVANPALLVPD---LEALATLAEE 168 (412)
T ss_dssp EETTCCHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHH
T ss_pred EeCCCchhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhccCCeEEEEeCCCCCCccccc---HHHHHHHHHH
Confidence 999999876554 3457999999975 489999999999999999999999999998 9999999999
Q ss_pred CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH---------------------
Q 014172 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK--------------------- 318 (429)
Q Consensus 260 ~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~--------------------- 318 (429)
| |+++|+|++|..+.+.. .+. ..+.++++.|+||.++.+|+|+||+++.+
T Consensus 169 ~-~~~li~D~~~~~~~~~~---~~~-----~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~ 239 (412)
T 2cb1_A 169 A-GVALVVDNTFGAAGALC---RPL-----AWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIP 239 (412)
T ss_dssp H-TCEEEEECGGGTTTTSC---CGG-----GGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------
T ss_pred c-CCEEEEECCCccccccC---Ccc-----ccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccccch
Confidence 9 99999999998752111 111 13567999999999988999999988543
Q ss_pred -------HHHHHHHHHh-hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 319 -------HFVAACNKIQ-SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 319 -------~~~~~l~~~~-~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
++.+.++... ...+.+.+.....++...++. +....++..++.+.+.+.|.+.+++..+
T Consensus 240 ~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~-------l~~~~~~~~~~~~~l~~~L~~~~~v~~v 306 (412)
T 2cb1_A 240 WEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLET-------VALRVARMSETARFLAERLQGHPKVKAL 306 (412)
T ss_dssp HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHHHHHHHHHHTCTTCSEE
T ss_pred hhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCch-------HHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 3444444432 222223344444433333332 3445556677888899999988888743
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=228.33 Aligned_cols=311 Identities=14% Similarity=0.136 Sum_probs=201.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. +.++. |+.+.+++.+.+.+.. .|+. ..+++.++++++.+.++ .+++|++|+|+++++.
T Consensus 50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~ggsea~~ 122 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT-SFGA---PCALENVLAEMVNDAVP---SIEMVRFVNSGTEACM 122 (427)
T ss_dssp TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS-CCSS---CCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCC-CcCC---CCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 477899999887 34443 8999999999886642 3432 45778888888887766 5789999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChHHHHHHc-CC-------------------EEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIA-DA-------------------TPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~-g~-------------------~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+++... ..++.|++.+|+|+++...+... |. .++.++.+ |+++|++++++
T Consensus 123 ~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~ 195 (427)
T 3fq8_A 123 AVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-------DLEAVKALFAE 195 (427)
T ss_dssp HHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-------CHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-------CHHHHHHHHHh
Confidence 9985432 23578999999998754332222 11 12333321 89999998875
Q ss_pred ---CCcEEEEcCCCCCccCCCC-HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 228 ---KSRLLILCSPSNPTGSVYP-KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 228 ---~~~~i~l~~p~NPtG~~~~-~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
++++|+++.++|++|.+.+ .+++++|.++|++| |+++|+||+|.++ +.+.. ....... ....+.||||.
T Consensus 196 ~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~-~~~li~DEv~~g~-~~g~~-~~~~~~~----~~~di~t~sK~ 268 (427)
T 3fq8_A 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVITGF-RIAYG-GVQEKFG----VTPDLTTLGKI 268 (427)
T ss_dssp STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBT-TTBTT-HHHHHTT----CCCSEEEECGG
T ss_pred CCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEecccccc-ccCcc-hhhHhcC----CCCChhhhhhh
Confidence 5667777777788887776 55699999999999 9999999999987 44421 1111111 11125689999
Q ss_pred cccccceeeEEEcCHHHHHHHHHHh---hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~~---~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
++ +|+|+||+++++++++.+.... ...+++.+.+++.++.++|+... .++..++.++..+..++.+.+.+..+ +
T Consensus 269 ~~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 345 (427)
T 3fq8_A 269 IG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR-QPGTYEYLDQITKRLSDGLLAIAQET-G 345 (427)
T ss_dssp GG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred hh-CCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 99 8999999999999988876432 23344568899999998887421 12333333333333333333333333 3
Q ss_pred ceeecCCceEEEEEecCCccCCc--ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 VKMSEPQGAFYLFIDFSTYYGSE--AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 ~~~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+....+..|+++|+.++...... .-.........++++.|+++ ||.+
T Consensus 346 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gi~v 394 (427)
T 3fq8_A 346 HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQ-GIYL 394 (427)
T ss_dssp CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHT-TEEC
T ss_pred CCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHC-CcEE
Confidence 32233445666888886420000 00000000145788888876 8876
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-26 Score=224.31 Aligned_cols=287 Identities=12% Similarity=0.045 Sum_probs=198.3
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEE-ecChHHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAV 172 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~-t~G~~~al~~~l 172 (429)
.+++++.|. .++|+.+++++.+.... +...+++ ...++.+.+.+++.+.+|.+ ++++|++ |+|+++++.+++
T Consensus 40 ~~~~~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~g~~-~~~~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 40 RDGRFGSGP--SKVRLEQLQTLTTTAAALFGTSHRQA--PVKNLVGRVRSGLAELFSLP-DGYEVILGNGGATAFWDAAA 114 (398)
T ss_dssp SSCBCCSSS--CCCCHHHHHGGGTTTTTTTTSCTTSH--HHHHHHHHHHHHHHHHTTCC-TTCEEEEEETCHHHHHHHHH
T ss_pred CCccccCCC--CCCCHHHHHHHhhcCCCccCcCcCCH--HHHHHHHHHHHHHHHHhCCC-CCceEEEeCCchhHHHHHHH
Confidence 466776553 35678888888762101 1112222 22345666777777777754 3578998 999999999999
Q ss_pred HHhcCCCCEEEEcCCCCCC-hHHHHHHc--CCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHH
Q 014172 173 LAVCSPGDEVIIPAPFWVS-YPEMARIA--DATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 173 ~~l~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
++++++| .+++..+.|.. ....+... |++++.++++ +++..+. .+++++++|++++|+||||.+++.++
T Consensus 115 ~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 115 FGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-----QTDPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp HHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-----CCCTTCSEEEEESEETTTTEECCCCC
T ss_pred HHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-----cccCCCCEEEEeCcCCCcceecchHH
Confidence 9999887 22232222211 12245556 8888889876 3333332 25678999999999999999999555
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh-
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ- 328 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~- 328 (429)
+.++ + |+++|+|++|..+.. ...+ .+..+++.|+||.++++| ++||+++++++++.+.+..
T Consensus 187 i~~~------~-~~~vivD~a~~~~~~----~~~~------~~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~~ 248 (398)
T 2fyf_A 187 PEGS------D-DALVVIDATSGAGGL----PVDI------AETDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAIAA 248 (398)
T ss_dssp CTTC------C--CEEEEECTTTTTTS----CCCG------GGCSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHHHH
T ss_pred hhhh------c-CCeEEEEeccccCCc----ccCc------ccCcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcccc
Confidence 5443 7 999999999986431 1111 124588999999999775 6999999999988775321
Q ss_pred --------------------hcccCCCchHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHHHHHhccCCCceeec-
Q 014172 329 --------------------SQFTSGASSISQKAGVAALGLGYAGGEV--VSKMVKAFRERRDFLVKSFGELEGVKMSE- 385 (429)
Q Consensus 329 --------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~--~~~~~~~~~~~r~~l~~~L~~l~g~~~~~- 385 (429)
.....+++...+.++.++++. ..+. +++++++++++++++.+.|++++|+++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~ 325 (398)
T 2fyf_A 249 TGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW---LVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVT 325 (398)
T ss_dssp TTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH---HHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCC
T ss_pred cCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccC
Confidence 112234666677777777764 2333 78889999999999999999988888873
Q ss_pred -C--CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 -P--QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 -p--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
| .+++++|++++.. .+..+++++|.++ ||.+
T Consensus 326 ~~~~~~~~~~~~~~~~~-----------~~~~~l~~~L~~~-gI~v 359 (398)
T 2fyf_A 326 DPGLRSQVVGTIDFVDD-----------VDAGTVAKILRAN-GIVD 359 (398)
T ss_dssp SGGGBCSSEEEEEECTT-----------SCHHHHHHHHHHT-TCBC
T ss_pred ChhhcCCcEEEEECCCC-----------CCHHHHHHHHHHC-CcEE
Confidence 4 3566899998642 2688999999887 9876
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=218.49 Aligned_cols=284 Identities=12% Similarity=0.132 Sum_probs=205.3
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHH-HHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-
Q 014172 99 RLAAGEPDFDTPVLIAEAGINAIREGFTR-YTPNAGTLELRSAI-CHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV- 175 (429)
Q Consensus 99 ~L~~g~~~~~~p~~v~~a~~~~~~~~~~~-Y~~~~G~~~lr~~i-a~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l- 175 (429)
.+..|.|++++++++.+++.+.+.++... |+ +...+|++++ |++++ ..+++++++|+++++.+++.++
T Consensus 4 ~i~~~~p~~~~~~~i~~a~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~g-------~~~~~v~~~sgt~al~~al~~l~ 74 (377)
T 3ju7_A 4 NIPFLRASTVPVIEYLDELKEIDASHIYTNYG--PINQRFEQTIMSGFFQ-------NRGAVTTVANATLGLMAAIQLKK 74 (377)
T ss_dssp CBCSCCCCCCCGGGGHHHHHHHHHHTCCSSSC--HHHHHHHHHHHHHTST-------TCSEEEEESCHHHHHHHHHHHHS
T ss_pred eeeccCCCCCCcHHHHHHHHHHHHcCCcccCC--HHHHHHHHHHHHHHhC-------CCCeEEEeCCHHHHHHHHHHHcC
Confidence 35677999999999999999999876533 33 3468899999 88852 1567899999999999999998
Q ss_pred cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc-ccC--CcEEEEcCCCCCccCCCCHHHHHH
Q 014172 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL-TEK--SRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 176 ~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l-~~~--~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
+++||+|+++.|+|.++...++..|++++.+++++ +++.+|++++++++ +++ +|+|+ |+||+|.+.+ +++
T Consensus 75 ~~~Gd~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~---~~~ 147 (377)
T 3ju7_A 75 RKKGKYALMPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMN---LEE 147 (377)
T ss_dssp CTTCCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCC---CHH
T ss_pred CCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccC---HHH
Confidence 89999999999999999999999999999999875 45789999999988 666 88877 7889999999 888
Q ss_pred HHHHHHhCCCeEEEEccCCccccc-CCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEc-CHHHHHHHHHHh
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQ 328 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~-~~~~~~~l~~~~ 328 (429)
|.++|+ | |++||+|++|+.... .+. . +... ...+.+.|| +|.++ +| +.|++++ ++++++.++...
T Consensus 148 i~~la~-~-~~~vi~D~a~a~g~~~~~~---~---~g~~-~~d~~~~S~~~~K~l~-~g-~gG~~~~~~~~l~~~~~~~~ 216 (377)
T 3ju7_A 148 YEELEK-K-GVPVVVDAAPGFGLMNGGM---H---YGQD-FSGMIIYSFHATKPFG-IG-EGGLIYSKNEEDIQRIKRMG 216 (377)
T ss_dssp HHHHHH-T-TCCBEEECTTCTTCEETTE---E---TTTT-CSSEEEEECBTTSSSC-CB-SCEEEEESCHHHHHHHHHHT
T ss_pred HHHHHh-c-CCEEEEECCCccCCeECCE---e---ccCC-CCcEEEEECCCCCcCC-CC-CcEEEEECCHHHHHHHHHHH
Confidence 999999 9 999999999986432 211 1 1000 012556665 58887 45 6788776 567788777665
Q ss_pred hc------------ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc--eeecCCc--eE--
Q 014172 329 SQ------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV--KMSEPQG--AF-- 390 (429)
Q Consensus 329 ~~------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~--~~~~p~~--~~-- 390 (429)
.. +.+..+.+.+..+...++ .++...++.+++++.+.+.|++++++ .+.++.+ .+
T Consensus 217 ~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~-------~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 289 (377)
T 3ju7_A 217 NFGFDTNRECTMMGFNCKMSEYAAAIGIATMK-------KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQ 289 (377)
T ss_dssp BTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCS
T ss_pred hcCCCCCCceeeccccCCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEE
Confidence 42 234455555555555554 34556666677777778888777554 2222211 12
Q ss_pred EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+.+.+++. .+.+++.++|.++ ||.+
T Consensus 290 ~~~~~~~~~-----------~~~~~l~~~L~~~-gI~~ 315 (377)
T 3ju7_A 290 FMPILCPEE-----------VRNKQVIEDLKKQ-KIEA 315 (377)
T ss_dssp SEEEECCTT-----------SCHHHHHHHHHTT-TBCC
T ss_pred EEEEEeCCh-----------hhHHHHHHHHHHC-CCce
Confidence 234555432 2477888887665 8875
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=214.06 Aligned_cols=213 Identities=14% Similarity=0.144 Sum_probs=166.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEe
Q 014172 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVIL 206 (429)
Q Consensus 131 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v 206 (429)
.+...+|++++++++ |. +++++++++++++..++.+++++||+|+++.|+|.++... ++..|++++.+
T Consensus 58 ~~~~~~l~~~la~~~----g~----~~~i~~~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v 129 (389)
T 3acz_A 58 NPTVEQFEEMVCSIE----GA----AGSAAFGSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLI 129 (389)
T ss_dssp CHHHHHHHHHHHHHH----TC----SEEEEESSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHh----CC----CeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEE
Confidence 344567888888876 31 2667777788999999999999999999999999987655 57899999999
Q ss_pred cCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc
Q 014172 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~ 286 (429)
+. .|++.+++++++++++|++++|+||||.+++ +++|.++|++| |+++|+|++|..+.+. .++ .
T Consensus 130 ~~-------~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~-~~~livD~~~~~~~~~----~~~-~ 193 (389)
T 3acz_A 130 DT-------SDVEKVKAAWKPNTKMVYLESPANPTCKVSD---IKGIAVVCHER-GARLVVDATFTSPCFL----KPL-E 193 (389)
T ss_dssp CT-------TCHHHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECTTTCTTTC----CGG-G
T ss_pred CC-------CCHHHHHHhcCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccc----Ccc-c
Confidence 86 3899999999999999999999999999999 99999999999 9999999999875432 111 1
Q ss_pred CCCCCCceEEEeccChhccccccee-eEEEcCH-HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRL-GYIAGPK-HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~~~-~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
.+.++++.|+||.++.+|.|+ ||+++++ ++++.+......++.+.+...+.++...++. +....+..
T Consensus 194 ----~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------l~~r~~~~ 262 (389)
T 3acz_A 194 ----LGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKT-------LPIRMQIH 262 (389)
T ss_dssp ----TTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHH
T ss_pred ----cCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccH-------HHHHHHHH
Confidence 356799999999999899998 9999998 8998888776556666777777777777753 22223333
Q ss_pred HHHHHHHHHHhccC
Q 014172 365 RERRDFLVKSFGEL 378 (429)
Q Consensus 365 ~~~r~~l~~~L~~l 378 (429)
.+++..+.+.|++.
T Consensus 263 ~~~~~~l~~~l~~~ 276 (389)
T 3acz_A 263 MENGLKVAKFLEQH 276 (389)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcC
Confidence 44444455555443
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=228.54 Aligned_cols=306 Identities=16% Similarity=0.141 Sum_probs=203.8
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+|||+.|.+ .++ .|+.+.+++.+.+.++. .|+ +..++++++++++.+.++ .+++|++|+|+++++.
T Consensus 54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~la~~~~---~~~~v~~~~sgseA~~ 126 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGW-LYG---APGEAEVLLAEKILGYVK---RGGMIRFVNSGTEATM 126 (434)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHHC---TTCEEEEESSHHHHHH
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 4677899998873 344 47899999999987642 221 234566677777766654 4689999999999999
Q ss_pred HHHHH---hcCCCCEEEEcCCCCCChHHHHH--------------HcCC------EEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 170 QAVLA---VCSPGDEVIIPAPFWVSYPEMAR--------------IADA------TPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 170 ~~l~~---l~~~gd~Vlv~~p~y~~~~~~~~--------------~~g~------~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.++++ +. +++.|++.+|+|+++...+. ..|+ .++.++. .|++.|+++++
T Consensus 127 ~al~~ar~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 198 (434)
T 2epj_A 127 TAIRLARGYT-GRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFA 198 (434)
T ss_dssp HHHHHHHHHH-CCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHH
T ss_pred HHHHHHHHhh-CCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHH
Confidence 99987 44 45788888999987544221 1232 2445543 28999999886
Q ss_pred c---CCcEEEEcCCCCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 227 E---KSRLLILCSPSNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 227 ~---~~~~i~l~~p~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
+ ++++|+++..+|+||.++ +.+++++|.++|++| |+++|+||+|.++ ..+. ......+.. . ..+.||||
T Consensus 199 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~~lI~DEv~~g~-~~g~-~~~~~~~~~-~---~di~s~sK 271 (434)
T 2epj_A 199 EYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRES-GALLILDEVVTGF-RLGL-EGAQGYFNI-E---GDIIVLGK 271 (434)
T ss_dssp HHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHH-TCEEEEEETTTTT-TSST-THHHHHHTC-C---CSEEEEEG
T ss_pred hCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHc-CCEEEEEcchhce-eCCc-chhhHHhCC-C---CCeeeecc
Confidence 3 555655554467899876 699999999999999 9999999999976 3232 111111111 1 11458999
Q ss_pred hcccccceeeEEEcCHHHHHHHHHHh---hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~~---~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
.++ .|+|+||+++++++++.+.... ...+++.+.+++.++.++|+. .++ +++.++++++++++.+.|+++.
T Consensus 272 ~l~-~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~---~~~--~~~~~~~~~~~~~l~~~L~~~~ 345 (434)
T 2epj_A 272 IIG-GGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKA---LEE--EPVYSVSREAAKALEEAASEVL 345 (434)
T ss_dssp GGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHH---HHH--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhc-CCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHH---HHh--cCHHHHHHHHHHHHHHHHHHHH
Confidence 999 5999999999999887765421 123456788888888888874 122 3456777778888888777641
Q ss_pred ---Cce-eecCCceEEEEEecCCc-cCCcccCC-CCCCChHHHHHHHHHhCCeec
Q 014172 380 ---GVK-MSEPQGAFYLFIDFSTY-YGSEAEGF-GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 ---g~~-~~~p~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++. ..++.| .|+|+.++.. ........ ....+..+++++|+++ ||.+
T Consensus 346 ~~~~~~~~~~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v 398 (434)
T 2epj_A 346 DRTGLPYTINRVE-SMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRR-GVFI 398 (434)
T ss_dssp HHHTCCEEEEEET-TEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHT-TEEC
T ss_pred hhCCCcEEEEEee-eEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHC-CeEE
Confidence 332 234444 4578888641 00000000 0001356888888865 9986
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=227.87 Aligned_cols=306 Identities=14% Similarity=0.135 Sum_probs=205.5
Q ss_pred cCCCeEEcCCCC--CCCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+|||..|. ..++ .|+++.+++.+.+.++. .|+ +..++++++++++.+.++ .+++|++++|+++++.
T Consensus 50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~l~~~l~~~~~---~~~~v~~~~~g~ea~~ 122 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGL-TFG---APSPLEVALAKKVKRAYP---FVDLVRFVNSGTEATM 122 (424)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS-CCS---SCCHHHHHHHHHHHHHCT---TCCEEEEESSHHHHHH
T ss_pred CCCEEEEccccccccccCCCCHHHHHHHHHHHHhCC-CCC---CCCHHHHHHHHHHHHhCC---CCCEEEEeCCHHHHHH
Confidence 467789999886 3444 47999999999987642 232 345677888888877764 5689999999999999
Q ss_pred HHHHH---hcCCCCEEEEcCCCCCChHHHHHH--------------cCC------EEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 170 QAVLA---VCSPGDEVIIPAPFWVSYPEMARI--------------ADA------TPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 170 ~~l~~---l~~~gd~Vlv~~p~y~~~~~~~~~--------------~g~------~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+++. +.+ ++.|++.+|+|+++...+.. .|+ .++.++. .|++.|++.++
T Consensus 123 ~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~ 194 (424)
T 2e7u_A 123 SALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLK 194 (424)
T ss_dssp HHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHH
Confidence 99886 554 57888999999886543321 122 3444543 28999999886
Q ss_pred c--CCcEEEEcCCCCC-ccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 227 E--KSRLLILCSPSNP-TGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 227 ~--~~~~i~l~~p~NP-tG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
. +..++++++|+|+ ||.++ +++++++|.++ ++| |+++|+||+|.++ ..+. ......+.. ... +.||||
T Consensus 195 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~-g~~lI~DEv~~g~-~~g~-~~~~~~~~~-~~d---i~s~sK 266 (424)
T 2e7u_A 195 RRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAY-GVLLIADEVMTGF-RLAF-GGATELLGL-KPD---LVTLGK 266 (424)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGG-TCEEEEECTTTTT-TSST-THHHHHHTC-CCS---EEEECG
T ss_pred hCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHc-CCEEEEecCcccc-ccch-hHHHHHhCC-Ccc---hhhhhh
Confidence 3 2334555667654 89765 78999999999 999 9999999999987 3332 111111111 111 348999
Q ss_pred hcccccceeeEEEcCHHHHHHHHHHh---hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC-
Q 014172 303 AFAMTGWRLGYIAGPKHFVAACNKIQ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL- 378 (429)
Q Consensus 303 ~~~~~G~R~G~v~~~~~~~~~l~~~~---~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l- 378 (429)
.++ +|+|+||+++++++++.+.... ...+++.+.+++.++.++|+. .++ .+++.++++++++++.+.|+++
T Consensus 267 ~l~-~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~-~~~~~~~~~~~~~~l~~~L~~~~ 341 (424)
T 2e7u_A 267 ILG-GGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLEL---LEE-NPGYYAYLEDLGARLEAGLKEVL 341 (424)
T ss_dssp GGG-TTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHH---HHH-CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhh-CCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHH---HHh-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 999 6999999999999888765421 223456788899998888874 222 2456777778888888887764
Q ss_pred --CCce-eecCCceEEEEEecCCcc-CCcccCC-CCCCChHHHHHHHHHhCCeec
Q 014172 379 --EGVK-MSEPQGAFYLFIDFSTYY-GSEAEGF-GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 379 --~g~~-~~~p~~~~~~~~~l~~~~-~~~~~~~-~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++. ..++.|. |+|++++... ....+.. ....+..+++++|++ .||.+
T Consensus 342 ~~~~~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v 394 (424)
T 2e7u_A 342 KEKGLPHTVNRVGS-MITVFFTEGPVVTFQDARRTDTELFKRFFHGLLD-RGIYW 394 (424)
T ss_dssp HHTTCCCEEEEETT-EEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHT-TTEEC
T ss_pred HhCCCceEEEeece-EEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHH-CCeEE
Confidence 1432 2345554 6888886410 0000000 000125678888885 59986
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=216.89 Aligned_cols=218 Identities=15% Similarity=0.194 Sum_probs=167.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~ 209 (429)
..++++++++++ |. .+.|++++| ++++..++++++++||+|+++.|.|.++... ++..|++++.++.+
T Consensus 116 ~~~l~~~lA~l~----g~---~~~v~~~sG-~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 116 TVVLEEKISALE----GA---ESTLLMASG-MCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp HHHHHHHHHHHH----TC---SEEEEESCH-HHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred HHHHHHHHHHHh----CC---CcEEEeCCH-HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 346777777765 42 245555555 5999999999999999999999999987664 55689999999862
Q ss_pred CCCCCCCCHHHHHhhcccCC-cEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 210 ISENFLLDPKVLESKLTEKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~-~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
|++++++++++++ ++|++++|+||||.+++ +++|.++|++| |+++|+|++|....+. .+ .
T Consensus 188 -------d~~~l~~ai~~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~-g~~livD~a~~~~~~~----~~-~--- 248 (445)
T 1qgn_A 188 -------DVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPLNQ----KA-L--- 248 (445)
T ss_dssp -------CHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTTC----CT-T---
T ss_pred -------CHHHHHHHhccCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCCcccccC----Cc-c---
Confidence 8999999999889 99999999999999999 89999999999 9999999999864321 11 1
Q ss_pred CCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
..+.++++.|+||.+|..| .++||+++++++++.+.......+...+.+...++...++ .+....+++.++
T Consensus 249 -~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~-------~l~~r~~~~~~~ 320 (445)
T 1qgn_A 249 -ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMK-------TLHLRVQQQNST 320 (445)
T ss_dssp -TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGG-------GHHHHHHHHHHH
T ss_pred -ccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHH-------HHHHHHHHHHHH
Confidence 1355699999999998444 4799999999999888776655555556665555444443 244555667777
Q ss_pred HHHHHHHhccCCCc-eeecC
Q 014172 368 RDFLVKSFGELEGV-KMSEP 386 (429)
Q Consensus 368 r~~l~~~L~~l~g~-~~~~p 386 (429)
++.+.+.|++.|++ .+..|
T Consensus 321 a~~l~~~L~~~p~v~~v~~p 340 (445)
T 1qgn_A 321 ALRMAEILEAHPKVRHVYYP 340 (445)
T ss_dssp HHHHHHHHHTCTTEEEEECT
T ss_pred HHHHHHHHhcCCCceEEECC
Confidence 88899999988777 44433
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-26 Score=228.69 Aligned_cols=304 Identities=10% Similarity=0.066 Sum_probs=209.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHH-H-HHHH---HHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIA-E-AGIN---AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~-~-a~~~---~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+..+|+..|. .+++. |+.+. + ++.+ .+.... .|+ ..+..+.+.++++.+.+.++. ..+++|++|+|+
T Consensus 52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-~~~-~~~~~~~~~~la~~la~~~~~-~~~~~v~~~~~g 128 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-PSN-SDVYSVAMARFVETFARVLGD-PALPHLFFVEGG 128 (449)
T ss_dssp TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-CCT-TTCCCHHHHHHHHHHHHHHCC-TTCCEEEEESSH
T ss_pred CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-CCC-cccCCHHHHHHHHHHHHhcCC-CCCCEEEEeCch
Confidence 466789987776 34553 78999 8 9998 776542 343 234455666777777766652 357899999999
Q ss_pred HHHHHHHHHHhc---C----------C-CCEEEEcCCCCCChHHHHHH-c--------CC-----EEEEecCCCCCCC--
Q 014172 165 KQSILQAVLAVC---S----------P-GDEVIIPAPFWVSYPEMARI-A--------DA-----TPVILPTRISENF-- 214 (429)
Q Consensus 165 ~~al~~~l~~l~---~----------~-gd~Vlv~~p~y~~~~~~~~~-~--------g~-----~~~~v~~~~~~~~-- 214 (429)
+++++.+++.+. . + ||+|++.+|+|+++...+.. . +. .++.+|.+..+..
T Consensus 129 seA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 208 (449)
T 2cjg_A 129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEP 208 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhcc
Confidence 999999987543 2 2 89999999999976543222 1 22 5566665320011
Q ss_pred ------CCCHHHHHhhcc---cCCcEEEEcCCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcc
Q 014172 215 ------LLDPKVLESKLT---EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284 (429)
Q Consensus 215 ------~~d~e~l~~~l~---~~~~~i~l~~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~ 284 (429)
..+++.|++.++ +++++|+++.++|||| .+.+++++++|.++|++| |+++|+||+|.++.+.|.. ..+
T Consensus 209 ~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~-g~lli~DEv~~g~g~~g~~-~~~ 286 (449)
T 2cjg_A 209 AMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEF-DALLIFDEVQTGCGLTGTA-WAY 286 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHT-TCEEEEECTTTTTTTTSSS-STH
T ss_pred ccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHC-CcEEEEeccccCCCccCcc-eee
Confidence 245667888884 5677766665579999 599999999999999999 9999999999987665531 111
Q ss_pred ccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH-----HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHH
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-----KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSK 359 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~-----~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~ 359 (429)
..+.. ... +.||||.+ |+||+++++++++.+. ......+++.+.+++.++.++|+. .++ ++
T Consensus 287 ~~~~~-~~d---i~t~sK~l-----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~---~~~--~~ 352 (449)
T 2cjg_A 287 QQLDV-APD---IVAFGKKT-----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEV---IEA--EG 352 (449)
T ss_dssp HHHTC-CCS---EEEECGGG-----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHH---HHH--HT
T ss_pred cccCC-Cce---EEEecCcc-----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHH---HHh--cc
Confidence 11111 112 34799987 7999999998877522 222334567789999999999874 222 34
Q ss_pred HHHHHHHHHHHHHHHhccC----CC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 360 MVKAFRERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 360 ~~~~~~~~r~~l~~~L~~l----~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.++++++++++.+.|+++ ++ +...++.|.| ++++++.. .+..+++++|+++ ||.+
T Consensus 353 ~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~-~~~~~~~~-----------~~~~~~~~~l~~~-Gv~v 413 (449)
T 2cjg_A 353 LFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM-CAFSLPTT-----------ADRDELIRQLWQR-AVIV 413 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTE-EEEECSSH-----------HHHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEE-EEEEECCh-----------HHHHHHHHHHHHC-CeEE
Confidence 6677788888888888753 55 6666677666 56788642 1467899999865 8876
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=213.77 Aligned_cols=271 Identities=17% Similarity=0.202 Sum_probs=198.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~ 188 (429)
++++.+++.+.+..+ .|++..+..++|++++++++ .+++++++|+++++..++.++ +++||+|+++.|+
T Consensus 16 ~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~ 85 (373)
T 3frk_A 16 EYEIKFKFEEIYKRN--WFILGDEDKKFEQEFADYCN--------VNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNT 85 (373)
T ss_dssp HHHHHHHHHHHHHHT--CCSSSHHHHHHHHHHHHHHT--------SSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTS
T ss_pred CHHHHHHHHHHHHCC--CccCCchHHHHHHHHHHHhC--------CCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCC
Confidence 577888888887764 46677788999999999974 248999999999999999999 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 014172 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (429)
Q Consensus 189 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~D 268 (429)
|.++...++..|++++.+++++ +++.+|++++++++++++++|+ |+||||...+ +++|.++|++| |+++|+|
T Consensus 86 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~-~~~li~D 157 (373)
T 3frk_A 86 FIATALAVSYTGAKPIFVEPDI-RTYNIDPSLIESAITEKTKAII---AVHLYGQPAD---MDEIKRIAKKY-NLKLIED 157 (373)
T ss_dssp CTHHHHHHHHHSCEEEEECEET-TTTEECGGGTGGGCCTTEEEEE---EECCTTCCCC---HHHHHHHHHHH-TCEEEEE
T ss_pred cHHHHHHHHHcCCEEEEEeccc-cccCcCHHHHHHhcCCCCeEEE---EECCCcCccc---HHHHHHHHHHc-CCEEEEE
Confidence 9999999999999999999875 3477999999999998888887 7889999998 88999999999 9999999
Q ss_pred cCCcccc-cCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEcC-HHHHHHHHHHhhcc------------c
Q 014172 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAGP-KHFVAACNKIQSQF------------T 332 (429)
Q Consensus 269 eay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~------------~ 332 (429)
++|..+. +++.. ...+ ..+.+.||| |.++..| +.|+++++ +++++.+....... +
T Consensus 158 ~a~~~g~~~~~~~---~~~~-----~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~ 228 (373)
T 3frk_A 158 AAQAHGSLYKGMK---VGSL-----GDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFN 228 (373)
T ss_dssp CTTCTTCEETTEE---TTSS-----SSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCB
T ss_pred CCcccCCEECCEe---cccc-----ccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHHHHhcCcccCCcccccccc
Confidence 9998633 22211 1111 137888887 8876224 47888876 56777776554321 1
Q ss_pred CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEE--EecCCccCCcccCCCC
Q 014172 333 SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLF--IDFSTYYGSEAEGFGK 409 (429)
Q Consensus 333 ~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~--~~l~~~~~~~~~~~~~ 409 (429)
...+.+...++...+ +.+++..++.+++++++.+.|++++ +.+.. +.+....| +.+..
T Consensus 229 ~~~~~~~aa~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~----------- 289 (373)
T 3frk_A 229 SRLDELQAGFLRVKL-------KYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS----------- 289 (373)
T ss_dssp CCCCHHHHHHHHHHH-------HTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE-----------
T ss_pred CCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe-----------
Confidence 122443333332222 2355667777888888999998874 55532 22222222 22211
Q ss_pred CCChHHHHHHHHHhCCeec
Q 014172 410 IENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 410 ~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++.+.|.++ ||.+
T Consensus 290 -~~~~~l~~~L~~~-gI~v 306 (373)
T 3frk_A 290 -EKRDELQKYLNNN-GIGT 306 (373)
T ss_dssp -SSHHHHHHHHHHT-TBCC
T ss_pred -CCHHHHHHHHHHC-CCCc
Confidence 1577888888776 8876
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=223.87 Aligned_cols=311 Identities=14% Similarity=0.100 Sum_probs=192.0
Q ss_pred cCCCeEEcCCCCC--CCC-ChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGEP--DFD-TPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~--~~~-~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.++|+..|.. .++ .+|++.+++.+.+.+....+.+. +....+++.+.+.++ .+++|++|+|+++++.
T Consensus 51 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~----~~~~~la~~l~~~~~---~~~~v~~~~sGsea~~ 123 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPT----EMEVKMAQLVTDLVP---TMDMVRMVNSGTEATM 123 (429)
T ss_dssp TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCC----HHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCC----HHHHHHHHHHHhhCC---CCCEEEEeCcHHHHHH
Confidence 5778999998874 344 37999999999987643222233 455556666655554 4689999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChHHHHH-HcCC-------------------EEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMAR-IADA-------------------TPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~-~~g~-------------------~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+++... ..++.|++.+++|+++...+. ..|. .+..++. .|+++|+++++.
T Consensus 124 ~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~ 196 (429)
T 4e77_A 124 SAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTY-------NDLASVRQAFEQ 196 (429)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECT-------TCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCC-------CCHHHHHHHHHh
Confidence 9988643 356889999999988765222 1111 1111211 189999998863
Q ss_pred --CCcEEEEcCCCCCcc-CCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 228 --KSRLLILCSPSNPTG-SVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 228 --~~~~i~l~~p~NPtG-~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
+..++++++|+|++| .+. +.+.+++|.++|++| |+++|+||+|.+| ..+.. .....+.. .. -+.||||.
T Consensus 197 ~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~-~~lli~DEv~~g~-r~g~~-~~~~~~~~-~p---di~t~sK~ 269 (429)
T 4e77_A 197 YPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEF-GALLIIDEVMTGF-RVALA-GAQDYYHV-IP---DLTCLGKI 269 (429)
T ss_dssp STTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHH-TCEEEEEETTTBT-TTBTT-CHHHHTTC-CC---SEEEEEGG
T ss_pred cCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc-CCEEEEeccccCc-ccCcc-hHHHhcCC-CC---Ceeeeccc
Confidence 234555667766554 333 355699999999999 9999999999987 43321 11111111 11 14589999
Q ss_pred cccccceeeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
++ +|+|+||+++++++++.+... ....+++.+.+++.++.++|+... .++.+++.++..+..++.+.+.+.++ +
T Consensus 270 ~~-~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~-~ 346 (429)
T 4e77_A 270 IG-GGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEIS-QVGVYETLTELTDSLATGLRHAAKEE-N 346 (429)
T ss_dssp GG-TTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred cc-CCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 99 899999999999998877642 123345688999999999887421 13334444443344444444444344 3
Q ss_pred ceeecCCceEEEEEecCCccCC-cc--cCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 VKMSEPQGAFYLFIDFSTYYGS-EA--EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 ~~~~~p~~~~~~~~~l~~~~~~-~~--~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+....+..|+|+|+.++..... .. -.........+++++|+++ ||.+
T Consensus 347 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v 396 (429)
T 4e77_A 347 IPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYL 396 (429)
T ss_dssp CCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEEC
T ss_pred CceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEE
Confidence 3333344556688888642000 00 0000000137889998877 8876
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-24 Score=217.77 Aligned_cols=311 Identities=13% Similarity=0.077 Sum_probs=221.2
Q ss_pred cCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEE---EecChHHHHH
Q 014172 93 AGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQIL---VSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~---~t~G~~~al~ 169 (429)
.|.+.++|+.-.+ ..+++.+.+++.+++......|...++..++++.+.+++.+.+|.+.++++++ +|+|+++++.
T Consensus 53 ~gnp~~~l~s~~t-~~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~ 131 (502)
T 3hbx_A 53 DGNPRLNLASFVT-TWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIM 131 (502)
T ss_dssp SCCGGGBTTCCSC-CCCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHH
T ss_pred CCCCCceeccccC-CCCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHH
Confidence 3444455543222 23467888888888766555565556678899999999999999764455544 5999999999
Q ss_pred HHHHHhcCC--------CC-----EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 170 QAVLAVCSP--------GD-----EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 170 ~~l~~l~~~--------gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
+++.++.++ |+ +|+++.++|..+...++..|++++.+|+++ +++.+|+++|++++++++++|++++
T Consensus 132 ~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~t~~v~~~~ 210 (502)
T 3hbx_A 132 LAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDENTICVAAIL 210 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCTTEEEEEEEB
T ss_pred HHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhhCCEEEEEec
Confidence 998888665 76 999999999999999999999999999864 4478999999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCC-----CeEEEEccCCccccc---CCCCCCccccCCCCCCceEEEeccChhccccc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHP-----RLLVLSDEIYEHIIY---APATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~-----~i~vi~Deay~~~~~---~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 308 (429)
|+||||.+.+ +++|.++|++++ |+++++|++|+.+.. .+.....+ . ..+..++..|.+|.++ .+
T Consensus 211 ~~n~tG~~~~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~---~-~~~~D~v~~s~hK~l~-~p 282 (502)
T 3hbx_A 211 GSTLNGEFED---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDF---R-LPLVKSINVSGHKYGL-VY 282 (502)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCST---T-STTEEEEEEETTTTTC-CC
T ss_pred CCCCCCcccC---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCccccccc---C-CCCceEEEECcccccC-CC
Confidence 9999999999 888888888762 799999999987541 22211111 1 1345577888999875 77
Q ss_pred ceeeEEEcC-HHHHHHHHHHhhccc----------CCC---chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 309 WRLGYIAGP-KHFVAACNKIQSQFT----------SGA---SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 309 ~R~G~v~~~-~~~~~~l~~~~~~~~----------~~~---~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
.++||++.. ++.+.........+. ... ..+.+.++...+. .+.+.++.++..++++++.+.
T Consensus 283 ~g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg-----~~g~~~~~~~~~~~a~~l~~~ 357 (502)
T 3hbx_A 283 AGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLG-----HEGYRNVMENCRENMIVLREG 357 (502)
T ss_dssp SSCEEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 889988764 443322111110110 111 2333444444443 355677888888899999999
Q ss_pred hccCCCceeecC-CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 375 FGELEGVKMSEP-QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 375 L~~l~g~~~~~p-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|++++++++..+ ....++.+++++.. ..+..+++++|.++ ||.+
T Consensus 358 L~~~~~~~~~~~~~~~~~v~f~~~~~~---------~~~~~~l~~~L~~~-Gi~v 402 (502)
T 3hbx_A 358 LEKTERFNIVSKDEGVPLVAFSLKDSS---------CHTEFEISDMLRRY-GWIV 402 (502)
T ss_dssp HHTTTCEEECSCSSSSSEEEEEESSCS---------SCCHHHHHHHHHTT-TCBC
T ss_pred HHhCCCEEEEeCCCCceEEEEEecCCC---------cCCHHHHHHHHHhC-CcEE
Confidence 999977988765 33344777776420 02567899988766 8865
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=215.00 Aligned_cols=214 Identities=13% Similarity=0.119 Sum_probs=166.3
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEe
Q 014172 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 206 (429)
Q Consensus 131 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 206 (429)
..+..++|+++|++++ . +++++++++++++..+++ ++++||+|+++.|.|.+... .++..|++++.+
T Consensus 54 ~~~~~~lr~~la~~~g----~----~~~i~~~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v 124 (393)
T 1n8p_A 54 NPNRENLERAVAALEN----A----QYGLAFSSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFT 124 (393)
T ss_dssp CHHHHHHHHHHHHHTT----C----SEEEEESCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEE
T ss_pred ChhHHHHHHHHHHHhC----C----CcEEEECChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEe
Confidence 3456788888888863 1 256666666999999999 99999999999999985444 346679999999
Q ss_pred cCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCC---CeEEEEccCCcccccCCCCCCc
Q 014172 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHP---RLLVLSDEIYEHIIYAPATHTS 283 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~---~i~vi~Deay~~~~~~~~~~~~ 283 (429)
|++ | +++++++++++++|++++|+||||.+++ +++|.++|++|+ |+++|+|++|..+.+. .
T Consensus 125 ~~~-------d-~~l~~~i~~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~ 188 (393)
T 1n8p_A 125 NDL-------L-NDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----N 188 (393)
T ss_dssp SSH-------H-HHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----C
T ss_pred CCC-------h-HHHHHhcccCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC-----C
Confidence 863 7 8999999989999999999999999999 899999999983 6999999999987653 1
Q ss_pred cccCCCCCCceEEEeccChhccccccee-eEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHH
Q 014172 284 FASLPGMWERTLTVNGFSKAFAMTGWRL-GYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (429)
Q Consensus 284 ~~~~~~~~~~~i~~~S~SK~~~~~G~R~-G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~ 361 (429)
... .+.++++.|+||.+|.+|+|+ ||+++ ++++++.+......++...+...+.++...++. +....
T Consensus 189 ~~~----~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~-------~~~~~ 257 (393)
T 1n8p_A 189 PLN----FGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLRV 257 (393)
T ss_dssp GGG----GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHH
T ss_pred HHH----cCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccch-------HHHHH
Confidence 122 246799999999999899999 99998 488888888776555555666666655555543 34445
Q ss_pred HHHHHHHHHHHHHhccCCC
Q 014172 362 KAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l~g 380 (429)
+...++++.+.+.|.+.+.
T Consensus 258 ~~~~~~~~~l~~~L~~~~~ 276 (393)
T 1n8p_A 258 RQAALSANKIAEFLAADKE 276 (393)
T ss_dssp HHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 5566677777777777644
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=215.27 Aligned_cols=271 Identities=15% Similarity=0.148 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHc-----C--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCC
Q 014172 111 VLIAEAGINAIRE-----G--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGD 180 (429)
Q Consensus 111 ~~v~~a~~~~~~~-----~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~---t~G~~~al~~~l~~l~~~gd 180 (429)
..+++++.+.... . .+.| +..|..+|++.+|+++ | .+..++ ++|+++++..++.+++++||
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~~~y-~~~~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all~~GD 102 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTGYGY-DDEGRDTLERVYATVF----K----TEAALVRPQIISGTHAISTVLFGILRPDD 102 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCTTCT-TCHHHHHHHHHHHHHH----T----CSEEEEETTSCSHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHhhhhhhccCCCcCCCC-ChhHHHHHHHHHHHHh----C----CCcEEEECCCccHHHHHHHHHHHhcCCCC
Confidence 4566666664311 1 1234 2335567777777775 3 234555 88999999999999999999
Q ss_pred EEEEcC-CCCCChHHH----------HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC----CCCCccCCC
Q 014172 181 EVIIPA-PFWVSYPEM----------ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS----PSNPTGSVY 245 (429)
Q Consensus 181 ~Vlv~~-p~y~~~~~~----------~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~----p~NPtG~~~ 245 (429)
+|++++ |.|..+... ++..|++++.+++++ ++.+|++++++++++++++|++++ |+||||.+.
T Consensus 103 ~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~--~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~ 180 (409)
T 3jzl_A 103 ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLE--NGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIE 180 (409)
T ss_dssp EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCT--TSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHH
T ss_pred EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCC--CCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccc
Confidence 999998 999998854 456799999999864 466899999999999999999999 999999886
Q ss_pred CHHHHHHHHHHHHh--CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ceeeEEEcCHHHHH
Q 014172 246 PKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVA 322 (429)
Q Consensus 246 ~~~~l~~I~~~a~~--~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~ 322 (429)
+ +++|+++|++ | |+++++|++|+.+.+... + . . .+.+++++|+||.+|.+| .+.||+++++++++
T Consensus 181 ~---l~~I~~la~~~~~-~~~livD~a~~~~~~~~~-p--~-~----~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~ 248 (409)
T 3jzl_A 181 K---IKEMIVFVKNINP-EVIVFVDNCYGEFVEYQE-P--P-E----VGADIIAGSLIKNPGGGLAKTGGYIAGKEALVD 248 (409)
T ss_dssp H---HHHHHHHHHHHCT-TCEEEEECTTCTTTSSCC-S--G-G----GTCSEEEEETTSGGGTTTCSSCEEEEECHHHHH
T ss_pred c---HHHHHHHHHhhCC-CCEEEEeCCcccccccCC-c--c-c----cCCeEEEECccccCCccCCceEEEEEeCHHHHH
Confidence 5 9999999999 9 999999999998654321 1 1 1 245699999999998555 44699999999999
Q ss_pred HHHHHhhcc----cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC----ceEEEEE
Q 014172 323 ACNKIQSQF----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ----GAFYLFI 394 (429)
Q Consensus 323 ~l~~~~~~~----~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~----~~~~~~~ 394 (429)
.+....... ..++....+.++...+ +.+..++++..+++.++.+.|+++ |+++.+.. ....+.+
T Consensus 249 ~l~~~~~~~~~g~~~g~~~~~~~~~l~gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~v~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 249 LCGYRLTTPGIGREAGASLYSLLEMYQGF-------FLAPHVTAQAIKGARFTAAMLAEF-GVEADPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCCEE
T ss_pred HHHHHhccccccccccccHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHhC-CCcccCCCCCCCccEEEEE
Confidence 988754321 1122221123333333 335567778888999999999998 77764322 2223556
Q ss_pred ecCCccCCcccCCCCCCChHHHHHHHHHh
Q 014172 395 DFSTYYGSEAEGFGKIENSESLCRYLLDK 423 (429)
Q Consensus 395 ~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 423 (429)
.+.+. ....+|++.|.+.
T Consensus 321 ~l~~~-----------~~~~~~~~~L~~~ 338 (409)
T 3jzl_A 321 SFHNK-----------EKMVAFAQAIQAA 338 (409)
T ss_dssp ECSCH-----------HHHHHHHHHHHHT
T ss_pred EeCCH-----------HHHHHHHHHHHhc
Confidence 66432 2466888887665
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.2e-24 Score=210.43 Aligned_cols=214 Identities=12% Similarity=0.132 Sum_probs=165.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~ 209 (429)
..++++.+|+++ | .+++++++|+++++.+++.+++++||+|+++.|.|.+....+ +..|++++.++.+
T Consensus 84 ~~~le~~lA~l~----g----~~~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~ 155 (415)
T 2fq6_A 84 HFSLQQAMCELE----G----GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL 155 (415)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred HHHHHHHHHHHh----C----CCeEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC
Confidence 456777777765 3 246778889999999999999999999999999998877554 4579999999752
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh--CCCeEEEEccCCcccccCCCCCCccccC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASL 287 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~--~~~i~vi~Deay~~~~~~~~~~~~~~~~ 287 (429)
|++++++++++++++|++++|+||||.+++ +++|+++|++ | |+++|+|++|....+. .++ .
T Consensus 156 -------d~~~le~ai~~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~-g~~livD~a~a~~~~~----~p~-~- 218 (415)
T 2fq6_A 156 -------IGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVLF----KAL-D- 218 (415)
T ss_dssp -------CGGGGGGGCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTSS----CGG-G-
T ss_pred -------CHHHHHHhhccCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcC-CCEEEEECCCcccccC----Ccc-c-
Confidence 899999999999999999999999999999 8999999999 9 9999999999864321 122 1
Q ss_pred CCCCCceEEEeccChhcccccce-eeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 288 PGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G~R-~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
.+.++++.|++|.++.+|.+ +||+++++++++.+.......+...+.....++...+ +.+....++..+
T Consensus 219 ---~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l-------~~l~~r~~~~~~ 288 (415)
T 2fq6_A 219 ---FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGL-------RTLGVRLRQHHE 288 (415)
T ss_dssp ---GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred ---cCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh-------hHHHHHHHHHHH
Confidence 35569999999999978765 5999998888888876655444444555444333333 345556666677
Q ss_pred HHHHHHHHhccCCCce
Q 014172 367 RRDFLVKSFGELEGVK 382 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~ 382 (429)
+...+.+.|++.|++.
T Consensus 289 n~~~l~~~L~~~~~v~ 304 (415)
T 2fq6_A 289 SSLKVAEWLAEHPQVA 304 (415)
T ss_dssp HHHHHHHHHHTCTTEE
T ss_pred HHHHHHHHHHcCCCee
Confidence 7888888887765543
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=216.04 Aligned_cols=233 Identities=15% Similarity=0.140 Sum_probs=170.2
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEe
Q 014172 131 NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVIL 206 (429)
Q Consensus 131 ~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 206 (429)
++...+|++.+++++ | .+..++++++++++..++++++++||+|++++|+|.++.. .++..|++++.+
T Consensus 81 ~p~~~~le~~lA~l~----g----~~~~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v 152 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLT----G----ALGVLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFV 152 (430)
T ss_dssp CHHHHHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHH----C----CCcEEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEe
Confidence 344567777777765 3 2346666677899999999999999999999999998877 667899999999
Q ss_pred cCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcccc
Q 014172 207 PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFAS 286 (429)
Q Consensus 207 ~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~ 286 (429)
+.+ |++.+++++++++++|++++|+||||.+++ +++|.++|++| |+++|+|++|....+. ...
T Consensus 153 ~~~-------d~~~l~~ai~~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~-g~~livD~a~~~~~~~-----~~~- 215 (430)
T 3ri6_A 153 DVM-------DSLAVEHACDETTKLLFLETISNPQLQVAD---LEALSKVVHAK-GIPLVVDTTMTPPYLL-----EAK- 215 (430)
T ss_dssp CTT-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTSCTTTC-----CGG-
T ss_pred CCC-------CHHHHHHhhCCCCeEEEEECCCCCCCeecC---HHHHHHHHHHc-CCEEEEECCCcccccC-----ChH-
Confidence 863 899999999999999999999999999999 88999999999 9999999999854321 111
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEEc---CHHH------------------HHHHHH-HhhcccCCCchHHHHHHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAG---PKHF------------------VAACNK-IQSQFTSGASSISQKAGV 344 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~---~~~~------------------~~~l~~-~~~~~~~~~~~~~q~aa~ 344 (429)
..+.++++.|+||.++.+|..+|.+++ +..+ +..+.. .........+.+....+.
T Consensus 216 ---~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l 292 (430)
T 3ri6_A 216 ---RLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQS 292 (430)
T ss_dssp ---GGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred ---HcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 134569999999999866655555443 2112 222221 222333334444433332
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee-ecCC----------------ceEEEEEecCC
Q 014172 345 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-SEPQ----------------GAFYLFIDFST 398 (429)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-~~p~----------------~~~~~~~~l~~ 398 (429)
.. .+.+....++..+++..+.+.|++.|+++. ..|. ||+.+|+.++.
T Consensus 293 ~~-------l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~ 356 (430)
T 3ri6_A 293 LG-------LETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES 356 (430)
T ss_dssp HH-------HHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred hh-------hhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC
Confidence 22 344566667778888999999999888764 3444 67468999863
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=219.39 Aligned_cols=258 Identities=15% Similarity=0.179 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC-CCCCChHHHHH----------HcCCEEE
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEMAR----------IADATPV 204 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~-p~y~~~~~~~~----------~~g~~~~ 204 (429)
..++++++++.+.+|......+++++ |+++++..++.+++++||+|++++ |.|..+...+. ..|++++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~ 143 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYN 143 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEE
T ss_pred hhHHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEE
Confidence 45777777777777754322233355 668999999999999999999998 99999987654 4799999
Q ss_pred EecCCCCCCCCCCHHHHHhhcccCCcEEEEc-CCCCCccCCCCHHHHHHHHHHHHh--CCCeEEEEccCCcccccCCCCC
Q 014172 205 ILPTRISENFLLDPKVLESKLTEKSRLLILC-SPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATH 281 (429)
Q Consensus 205 ~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~-~p~NPtG~~~~~~~l~~I~~~a~~--~~~i~vi~Deay~~~~~~~~~~ 281 (429)
.++.++ ++.+|+++|++++++++++|+++ +||||+|.+.+.+++++|+++|++ | |+++|+|++|..+.++.. +
T Consensus 144 ~v~~~~--~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~-~~~livDea~~~~~~~~~-~ 219 (431)
T 3ht4_A 144 AVPLTE--GGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKP-DVVVFVDNCYGEFIEEQE-P 219 (431)
T ss_dssp ECCBCT--TSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCT-TCEEEEECTTCTTSSSCC-G
T ss_pred EeCCCC--CCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCC-CCEEEEeCCChhhccCCC-c
Confidence 999864 36799999999999999999998 699999999999999999999999 9 999999999998765432 1
Q ss_pred CccccCCCCCCceEEEeccChhccc-ccceeeEEEcCHHHHHHHHHHhhcccCC----CchHHHHHHHHHHhcCCCChHH
Q 014172 282 TSFASLPGMWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACNKIQSQFTSG----ASSISQKAGVAALGLGYAGGEV 356 (429)
Q Consensus 282 ~~~~~~~~~~~~~i~~~S~SK~~~~-~G~R~G~v~~~~~~~~~l~~~~~~~~~~----~~~~~q~aa~~~l~~~~~~~~~ 356 (429)
.. .+.+++++||||.+|. .+...||+++++++++.+.........+ ++.....++...+ +.
T Consensus 220 ---~~----~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l-------~~ 285 (431)
T 3ht4_A 220 ---CH----VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGF-------FL 285 (431)
T ss_dssp ---GG----TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHH-------HH
T ss_pred ---cc----cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHh-------hh
Confidence 11 2345999999999752 1234499999999999987754332221 2111122333333 23
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCceeecC----CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhC
Q 014172 357 VSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKA 424 (429)
Q Consensus 357 ~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~ 424 (429)
+..+.++..++++++.+.|+++ |+++.+. ..+..+.+.+++. ....+|++.|.+..
T Consensus 286 ~~~~~~~~~~~a~~l~~~L~~~-g~~v~p~~~~~~~~li~~i~l~~~-----------~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 286 APHVAGQALKGAIFTAAFLEKL-GMNTSPAWNAPRTDLIQSVQFDDK-----------DRMIAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCCEESCTTSCCSSSCCEEECCCH-----------HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-cCEecCCCCCCCccEEEEEEeCCH-----------HHHHHHHHHHHhcC
Confidence 4566777888889999999987 6666432 2223455666532 24668888887654
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=219.95 Aligned_cols=291 Identities=11% Similarity=0.058 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-------CCcEEEecChHHHHHHHHHHhcCC----
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYT-------PDQILVSNGAKQSILQAVLAVCSP---- 178 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~-------~~~i~~t~G~~~al~~~l~~l~~~---- 178 (429)
|..+.+.+...+......|...++..++++++++++.+.+|.+.+ ..++++|+|+|+++..++.++.++
T Consensus 87 ~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~ 166 (486)
T 1js3_A 87 PAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRR 166 (486)
T ss_dssp HHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhh
Confidence 556777888777655556766667789999999999999996532 246899999999999888776431
Q ss_pred -----CC--------E--EEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCc------EEEEcCC
Q 014172 179 -----GD--------E--VIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSR------LLILCSP 237 (429)
Q Consensus 179 -----gd--------~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~------~i~l~~p 237 (429)
|| . |+++.++|.++...++..|++++.+|++ +++.+|+++|+++++++++ +|++++|
T Consensus 167 ~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~ 244 (486)
T 1js3_A 167 LQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATLG 244 (486)
T ss_dssp HHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence 43 3 7889999999999999999999999985 4678999999999986553 7888999
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCc-cccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS-FASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
+||||.+-+ +++|+++|++| |+++++|++|+.+.+....... +..+ .+...++.+++|.++++ +++||+++
T Consensus 245 ~n~tG~~~~---l~~I~~la~~~-~~~lhvD~a~g~~~~~~~~~~~~~~g~---~~adsi~~~~hK~~~~p-~~~G~l~~ 316 (486)
T 1js3_A 245 TTSCCSFDN---LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHLLNGV---EFADSFNFNPHKWLLVN-FDCSAMWV 316 (486)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGGGTTG---GGCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCCCCC---HHHHHHHHHHc-CCEEEEehhhHHHHHHCHHHHHHhcCc---cccCeeEEchhhhcCCC-cceEEEEE
Confidence 999999977 99999999999 9999999999976543211111 1112 12235668899999855 89999998
Q ss_pred CHH-H-HHHHHH---Hhhc-----------------ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 317 PKH-F-VAACNK---IQSQ-----------------FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 317 ~~~-~-~~~l~~---~~~~-----------------~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
+++ . .+.+.. .... .+.....+.+.++...+. .++++++.+++.++++++.+.
T Consensus 317 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~ 391 (486)
T 1js3_A 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYG-----VKGLQAYIRKHVQLSHEFEAF 391 (486)
T ss_dssp SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 644 2 333210 0000 000123455555555543 567888999999999999999
Q ss_pred hccCCCceee-cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 375 FGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 375 L~~l~g~~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
|+++||+++. +|+.++++| .++.. . ....++.++|.+++.+
T Consensus 392 L~~~~~~~~~~~~~~~~v~f-~~~~~-~---------~~~~~l~~~L~~~g~~ 433 (486)
T 1js3_A 392 VLQDPRFEVCAEVTLGLVCF-RLKGS-D---------GLNEALLERINSARKI 433 (486)
T ss_dssp HHHCTTEEECSCCCSSEEEE-EESSC-H---------HHHHHHHHHHHHHTSC
T ss_pred HhcCCCeEEeCCCceeEEEE-EecCh-H---------HHHHHHHHHHHhcCCE
Confidence 9998899886 467776554 55421 0 0257899998887434
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=216.85 Aligned_cols=252 Identities=11% Similarity=0.082 Sum_probs=183.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCCEEEEcC-CCCCChHHH-----------H
Q 014172 132 AGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGDEVIIPA-PFWVSYPEM-----------A 196 (429)
Q Consensus 132 ~G~~~lr~~ia~~l~~~~g~~~~~~~i~~---t~G~~~al~~~l~~l~~~gd~Vlv~~-p~y~~~~~~-----------~ 196 (429)
.|..+|++.+|+++ | .+..++ ++|+++++..++.++++|||+|++++ |.|.++... +
T Consensus 73 ~~~~~Le~~lA~l~----g----~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l 144 (427)
T 3i16_A 73 IGRDSLDAVYARVF----N----TESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSL 144 (427)
T ss_dssp HHHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCT
T ss_pred HHHHHHHHHHHHHh----C----CcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHH
Confidence 35566777777765 3 233455 78889999999999999999999999 999988743 4
Q ss_pred HHcCCEEEEecCCCCCCCCCCHHHHHhhcc--cCCcEEEEcC----CCCCccCCCCHHHHHHHHHHHHh--CCCeEEEEc
Q 014172 197 RIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSD 268 (429)
Q Consensus 197 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~--~~~~~i~l~~----p~NPtG~~~~~~~l~~I~~~a~~--~~~i~vi~D 268 (429)
+..|++++.++++. ++.+|+++++++++ +++|+|++++ |+||||.+.+ +++|+++|++ | |+++++|
T Consensus 145 ~~~G~~~~~v~~~~--~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~i~d---l~~i~~la~~~~~-g~~livD 218 (427)
T 3i16_A 145 KEFGINYKQVDLKE--DGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIED---IKSIVDCVKNIRK-DIICFVD 218 (427)
T ss_dssp GGGTCEEEECCCCT--TSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCCHHH---HHHHHHHHHHHCT-TSEEEEE
T ss_pred HHcCCEEEEecCcc--CCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCcccHHH---HHHHHHHHHHhCC-CCEEEEE
Confidence 56799999999864 34689999999998 7899999998 9999987755 9999999999 9 9999999
Q ss_pred cCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHhhcccCC--Cch-HHHHHHH
Q 014172 269 EIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSG--ASS-ISQKAGV 344 (429)
Q Consensus 269 eay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~--~~~-~~q~aa~ 344 (429)
++|..+.+... +. . .+.+++++|+||.+|.+| .+.||+++++++++.+.........+ .+. +. ++.
T Consensus 219 ~a~~~~~~~~~---p~-~----~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~--~a~ 288 (427)
T 3i16_A 219 NCYGEFMDTKE---PT-D----VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFG--VVR 288 (427)
T ss_dssp CTTTTTSSSSC---GG-G----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHH
T ss_pred CCCccccccCC---cc-c----cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHH--HHH
Confidence 99998654321 11 1 245599999999998555 67899999999999988743222211 111 22 122
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc----eEEEEEecCCccCCcccCCCCCCChHHHHHHH
Q 014172 345 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFYLFIDFSTYYGSEAEGFGKIENSESLCRYL 420 (429)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L 420 (429)
.++.. .+.+..++++..+++.++.+.|+++ |+++.+..+ ...+.+.+... ....+|++.|
T Consensus 289 ~~l~g----l~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~~i~~i~l~~~-----------~~~~~f~~~l 352 (427)
T 3i16_A 289 SMYQG----LFLAPHISMEALKGAILCSRIMELA-GFEVMPKYDEKRSDIIQSIKFNDK-----------DKLIEFCKGI 352 (427)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSCEEEECSSH-----------HHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCccEEEEEEECCH-----------HHHHHHHHHH
Confidence 22221 2345677788888999999999998 667653322 22456666432 2456788887
Q ss_pred HHh
Q 014172 421 LDK 423 (429)
Q Consensus 421 l~~ 423 (429)
...
T Consensus 353 ~~~ 355 (427)
T 3i16_A 353 QTG 355 (427)
T ss_dssp HHT
T ss_pred hhc
Confidence 654
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=215.51 Aligned_cols=270 Identities=12% Similarity=0.111 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHc-----C--CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEE---ecChHHHHHHHHHHhcCCCC
Q 014172 111 VLIAEAGINAIRE-----G--FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILV---SNGAKQSILQAVLAVCSPGD 180 (429)
Q Consensus 111 ~~v~~a~~~~~~~-----~--~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~---t~G~~~al~~~l~~l~~~gd 180 (429)
+.|++++.+.... + .+.| +..|..+|++.+|+++ | .+..++ ++|+++++..++.++++|||
T Consensus 47 ~~Vl~a~~~~~~~~~~~~~~~gy~Y-~~~g~~~Le~~lA~l~----g----~e~alv~p~~~sGt~A~~~al~all~pGD 117 (427)
T 3hvy_A 47 LKVLKAFQEERISESHFTNSSGYGY-NDIGRDSLDRVYANIF----N----TESAFVRPHFVNGTHAIGAALFGNLRPND 117 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCTTCT-TCHHHHHHHHHHHHHH----T----CSEEEEETTCCSHHHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHHHHHHhcccCcCCCC-CchhHHHHHHHHHHHh----C----CCceEEeCCCCcHHHHHHHHHHHhcCCCC
Confidence 5667776664221 1 1234 2335567777777765 3 234466 78889999999999999999
Q ss_pred EEEEcC-CCCCChHH-----------HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc--cCCcEEEEcC----CCCCcc
Q 014172 181 EVIIPA-PFWVSYPE-----------MARIADATPVILPTRISENFLLDPKVLESKLT--EKSRLLILCS----PSNPTG 242 (429)
Q Consensus 181 ~Vlv~~-p~y~~~~~-----------~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~--~~~~~i~l~~----p~NPtG 242 (429)
+|++++ |.|.++.. .++..|++++.++. +++.+|+++++++++ +++|+|++++ |+||||
T Consensus 118 ~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg 194 (427)
T 3hvy_A 118 TMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL 194 (427)
T ss_dssp EEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred EEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence 999999 99998873 34567999999998 245689999999998 8999999998 999998
Q ss_pred CCCCHHHHHHHHHHHHh--CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ceeeEEEcCHH
Q 014172 243 SVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKH 319 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~--~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~ 319 (429)
.+.+ +++|+++|++ | |+++++|++|..+.+... +. . .+.+++++|+||.+|.+| .+.||++++++
T Consensus 195 ~v~d---l~~i~~ia~~~~~-g~~livD~a~~~~~~~~~---p~-~----~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 195 RIAE---IAEIIKSIREVNE-NVIVFVDNCYGEFVEEKE---PT-D----VGADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CHHH---HHHHHHHHHHHCS-SSEEEEECTTCTTTSSSC---GG-G----GTCSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred cHHH---HHHHHHHHHHhCC-CCEEEEECCccccccCCC---Cc-c----cCCeEEEECCcccccccccceEEEEEECHH
Confidence 7755 9999999999 8 999999999987654321 11 1 245699999999998444 56799999999
Q ss_pred HHHHHHHHhhcccCC---CchHH-HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc----eEE
Q 014172 320 FVAACNKIQSQFTSG---ASSIS-QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG----AFY 391 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~---~~~~~-q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~----~~~ 391 (429)
+++.+.........+ .+++. ...+...+ ..+..++++..+++.++.+.|+++ |+++.+..+ ...
T Consensus 263 li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl-------~~~~~r~~~~~~~a~~la~~L~~~-g~~V~p~~~~~~~~li 334 (427)
T 3hvy_A 263 YVTQATFRVTVPGIGGECGSTFGVMRSLYEGL-------FMAPHVTIEAVKGAVFCARIMELA-GFDVLPKYNDKRTDII 334 (427)
T ss_dssp HHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT-TCEEESCTTSCCSSSE
T ss_pred HHHHHHHHhhcCCcccccCCCHHHHHHHHHhH-------hHHHHHHHHHHHHHHHHHHHHHhC-CCeecCCCCCCCceEE
Confidence 999988754222211 11122 22222222 334567777888999999999998 667643322 224
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHh
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~ 423 (429)
+.+.+.+. ....+|++.|...
T Consensus 335 ~~~~l~~~-----------~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 335 QAIKFNDE-----------KKLIDFIKGIQTA 355 (427)
T ss_dssp EEEECSSH-----------HHHHHHHHHHHHT
T ss_pred EEEeCCCH-----------HHHHHHHHHhccc
Confidence 66666432 2456788877654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-23 Score=201.96 Aligned_cols=286 Identities=13% Similarity=0.169 Sum_probs=201.1
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV- 175 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l- 175 (429)
+|++..+.+. .++++.+++.+.+.+. .|.+..+..+++++++++++ .+++++++++++++..++.++
T Consensus 3 ~~~~~~~~~~--~~~~~~~a~~~~~~~~--~~~~~~~~~~l~~~la~~~~--------~~~~i~~~sGt~a~~~al~~~~ 70 (390)
T 3b8x_A 3 MINYPLASST--WDDLEYKAIQSVLDSK--MFTMGEYVKQYETQFAKTFG--------SKYAVMVSSGSTANLLMIAALF 70 (390)
T ss_dssp --CBCSCCCC--CCHHHHHHHHHHHHHT--CCSSCHHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHTT
T ss_pred ceeccCCCCC--CCHHHHHHHHHHHHcC--CCCCChHHHHHHHHHHHHHC--------CCcEEEECCHHHHHHHHHHHHH
Confidence 4555555443 3678888998888763 46667778899999999974 125777778888999999998
Q ss_pred ------cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHH
Q 014172 176 ------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 176 ------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
+++||+|+++.|+|.++...++..|++++.++++++ ++.+|+++|++++++++++|++++ ++|...+
T Consensus 71 ~~~~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~--- 143 (390)
T 3b8x_A 71 FTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDSTKAILTVN---LLGNPNN--- 143 (390)
T ss_dssp SSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCC---
T ss_pred hhhhcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCCeEEEEEC---CccChhh---
Confidence 789999999999999999999999999999998754 477999999999998899998873 5677777
Q ss_pred HHHHHHHHHhCCCeEEEEccCCccc-ccCCCCCCccccCCCCCCceEEEec--cChhcccccceeeEEEcCH-HHHHHHH
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHI-IYAPATHTSFASLPGMWERTLTVNG--FSKAFAMTGWRLGYIAGPK-HFVAACN 325 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~i~~~S--~SK~~~~~G~R~G~v~~~~-~~~~~l~ 325 (429)
+++|.++|++| |+++|+|++|... .+.+ ..+.. ..++...| .+|.++ +| +.|++++++ ++.+.+.
T Consensus 144 ~~~i~~l~~~~-~~~li~D~a~~~g~~~~~------~~~g~--~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~~l~~~~~ 212 (390)
T 3b8x_A 144 FDEINKIIGGR-DIILLEDNCESMGATFNN------KCAGT--FGLMGTFSSFYSNHIA-TM-EGGCIVTDDEEIYHILL 212 (390)
T ss_dssp HHHHHHHHTTS-CCEEEEECTTCTTCEETT------EETTS--SSSEEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHc-CCEEEEECcCcccCEECC------ccccc--ccceEEEEccCCCCCc-cC-CceEEEeCCHHHHHHHH
Confidence 99999999999 9999999999853 2221 11111 11233333 245553 33 459999875 6766665
Q ss_pred HHhhcc-------------------------------cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 326 KIQSQF-------------------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 326 ~~~~~~-------------------------------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
...... +...+.+...++...+ +++++..++.+++++++.+.
T Consensus 213 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l-------~~l~~~~~~~~~~~~~l~~~ 285 (390)
T 3b8x_A 213 CIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL-------KKLPRFISVRRKNAEYFLDK 285 (390)
T ss_dssp HHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 433111 1114444444444433 34667788888899999999
Q ss_pred hccCCCceeecC--CceE-EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 375 FGELEGVKMSEP--QGAF-YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 375 L~~l~g~~~~~p--~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
|++++|+++..+ .+++ .+++.++...+ .+..++.++|.++ ||.++
T Consensus 286 L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~l~~~L~~~-gI~v~ 333 (390)
T 3b8x_A 286 FKDHPYLDVQQETGESSWFGFSFIIKKDSG---------VIRKQLVENLNSA-GIECR 333 (390)
T ss_dssp HTTCSSEEECCCCSBCCCCEEEEEECTTSC---------CCHHHHHHHHHHT-TBCCB
T ss_pred hcCCCCcccCCCCCCcccEEEEEEecCcCc---------ccHHHHHHHHHHC-CCCee
Confidence 999888887653 2343 24556652100 2678899888664 88763
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-23 Score=211.34 Aligned_cols=274 Identities=15% Similarity=0.126 Sum_probs=204.0
Q ss_pred hHHHH-HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC--------CC-
Q 014172 110 PVLIA-EAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS--------PG- 179 (429)
Q Consensus 110 p~~v~-~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~--------~g- 179 (429)
|..+. +.+...+......|...++..++++++.+++.+.+|.+.+++++++|+|+++++..++.++.+ +|
T Consensus 105 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~ 184 (504)
T 2okj_A 105 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 184 (504)
T ss_dssp HHHHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCG
T ss_pred HHHHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCc
Confidence 44443 444444444344566666667889999999999999654377999999999999999888753 56
Q ss_pred ----C-EEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCCC
Q 014172 180 ----D-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 180 ----d-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~~ 245 (429)
+ .|+++.+.|+++...++..|. +++.+|++ .++.+|++.|++++++ ++++|++++|+||||.+.
T Consensus 185 ~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~ 262 (504)
T 2okj_A 185 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFD 262 (504)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBC
T ss_pred cccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEecC--CCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcC
Confidence 6 799999999999999999887 89999985 3577999999999975 588999999999999998
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH-HHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAAC 324 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~~~~l 324 (429)
+ +++|+++|++| |+|+++|++|+.+.+....... .+.+.....+++.+++|.++.+ .++|++++.+ ++++..
T Consensus 263 ~---l~~I~~la~~~-g~~lhvD~a~~~~~~~~~~~~~--~~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~~ 335 (504)
T 2okj_A 263 P---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGC 335 (504)
T ss_dssp C---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHH
T ss_pred C---HHHHHHHHHHc-CCEEEEehhhhhHHHhCHhhHh--hcCCcccCCEEEECchhhcCCC-cceEEEEEECHHHHHHH
Confidence 8 99999999999 9999999999987653221111 1221123447888999999844 7899999875 465543
Q ss_pred HHHhhcccC---------------------CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 325 NKIQSQFTS---------------------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 325 ~~~~~~~~~---------------------~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
......+.. ....+.+.++..++. .++++++.++..++++++.+.|++++|+++
T Consensus 336 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 410 (504)
T 2okj_A 336 NQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG-----TVGFENQINKCLELAEYLYAKIKNREEFEM 410 (504)
T ss_dssp HCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred hcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 211111110 013556666666664 456888888999999999999999889988
Q ss_pred ec---CCceEEEEEecC
Q 014172 384 SE---PQGAFYLFIDFS 397 (429)
Q Consensus 384 ~~---p~~~~~~~~~l~ 397 (429)
.. |..++++|..++
T Consensus 411 ~~~~~p~~~~v~f~~~~ 427 (504)
T 2okj_A 411 VFNGEPEHTNVCFWYIP 427 (504)
T ss_dssp SSSSCCSSSCEEEEECC
T ss_pred EecCCCCeEEEEEEEeC
Confidence 74 778887776554
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-24 Score=214.06 Aligned_cols=325 Identities=13% Similarity=0.059 Sum_probs=205.0
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC-CCCCC------CCCCHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-TRYTP------NAGTLELRSAIC 142 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~~Y~~------~~G~~~lr~~ia 142 (429)
.+++.+.|..+..+.+..++.. +.|.|-.+++. +++.|++++...+.+.+ .+|.. ..-..+|++...
T Consensus 33 ~~l~~~d~~~~~~~~~e~~rq~----~~i~lias~n~--~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~ 106 (490)
T 2a7v_A 33 ESLSDSDPEMWELLQREKDRQC----RGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQ 106 (490)
T ss_dssp CCHHHHCHHHHHHHHHHHHHHH----HSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHH
T ss_pred chhhhcCHHHHHHHHHHHHHHH----cCceEECCCCC--CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHH
Confidence 4567777765554444333332 45788776655 58999999988775533 22321 122347776677
Q ss_pred HHHHhhcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH--------HHHHcCCEEE--EecCCCC
Q 014172 143 HKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE--------MARIADATPV--ILPTRIS 211 (429)
Q Consensus 143 ~~l~~~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~--------~~~~~g~~~~--~v~~~~~ 211 (429)
+++.+.+|...+.. ..++++++++++..++.++++|||+|+++++.|.++.. .+...|..+. .+++++
T Consensus 107 ~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~- 185 (490)
T 2a7v_A 107 RRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP- 185 (490)
T ss_dssp HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-
T ss_pred HHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc-
Confidence 88888888432111 23555678999999999999999999999998876432 2345565444 444443
Q ss_pred CCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCc-ccccCCCCCCccccCCC
Q 014172 212 ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYE-HIIYAPATHTSFASLPG 289 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~-~~~~~~~~~~~~~~~~~ 289 (429)
+++.+|+++|++.+. .++|+|+++.++||+ ..+ +++|.++|++| |+++++|++|. ++++.+..+.++ .
T Consensus 186 ~~~~iD~d~le~~l~~~~~klIi~~~s~~~~--~~d---l~~i~~ia~~~-g~~livD~Ah~~glv~~g~~~~~~-~--- 255 (490)
T 2a7v_A 186 KTGLIDYNQLALTARLFRPRLIIAGTSAYAR--LID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPF-K--- 255 (490)
T ss_dssp TTCSBCHHHHHHHHHHHCCSEEEECCSSCCS--CCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGG-G---
T ss_pred ccCCcCHHHHHHHHhhcCCcEEEEcCCCCCC--ccc---HHHHHHHHHHc-CCEEEEccccccccccCCcCCCCC-C---
Confidence 346799999999986 478999989899875 556 89999999999 99999999975 444444322222 1
Q ss_pred CCCceEEEeccChhcccccceeeEEEcCHH---------------HHHHHHHHhhcccCC-CchHHHHHHHHHHhcCCCC
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPKH---------------FVAACNKIQSQFTSG-ASSISQKAGVAALGLGYAG 353 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~---------------~~~~l~~~~~~~~~~-~~~~~q~aa~~~l~~~~~~ 353 (429)
...+++.|+||++ .|+|.|+++++++ +.+.+.+.......+ ++.....++..++... .
T Consensus 256 --~aDiv~~S~hK~l--~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~--~ 329 (490)
T 2a7v_A 256 --HADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--C 329 (490)
T ss_dssp --TCSEEEEESSGGG--CSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--H
T ss_pred --CCCEEEECCcccC--ccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHH--h
Confidence 2348899999998 4788899998764 556666554443333 3433344444455431 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 354 GEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 354 ~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.+..++..+++.++++++.+.|.+. |+++.. +..++++|+++... + .+..++.+. |++.||.++
T Consensus 330 ~~~~~~~~~~~~~na~~L~~~L~~~-G~~v~~~~t~t~lv~vdl~~~-g---------~~~~~~~~~-L~~~GI~v~ 394 (490)
T 2a7v_A 330 TPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPK-G---------LDGARAERV-LELVSITAN 394 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECTTT-T---------CCHHHHHHH-HHHTTEECE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc-CcEEecCCCCCeEEEEEeCCC-C---------CCHHHHHHH-HHhCCeEEe
Confidence 2345778888999999999999997 898864 34567799998642 1 256665555 466799874
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=212.75 Aligned_cols=304 Identities=14% Similarity=0.114 Sum_probs=217.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC------------
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS------------ 177 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~------------ 177 (429)
|..+.+.+..++......|...++..++++++++|+.+.+|.+.++..+++|+|+++++..++.++.+
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~ 188 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMA 188 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGG
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcc
Confidence 45566777777776667888888889999999999999999765567999999999999988888754
Q ss_pred --CCCEEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCCCCHHHHHhhcccC------CcEEEEcCCCCCccCCCC
Q 014172 178 --PGDEVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 178 --~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~l~~~------~~~i~l~~p~NPtG~~~~ 246 (429)
+++.|+++.++|.++...++..|+ +++.++++ .++.+|+++|+++++++ +++|++++|+||||.+-+
T Consensus 189 ~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~ 266 (511)
T 3vp6_A 189 AVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP 266 (511)
T ss_dssp GSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC
T ss_pred cCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecC--CCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc
Confidence 567999999999999999999998 89999986 34779999999999764 788999999999999977
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH-HHHHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK-HFVAACN 325 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~-~~~~~l~ 325 (429)
+++|+++|++| |+|+++|++|+........... .+.+.....+++.+++|+++.+ ..+|+++..+ ++++...
T Consensus 267 ---l~~I~~ia~~~-~~~lhvD~a~~~~~~~~~~~~~--~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~~~~~~~~~~~~ 339 (511)
T 3vp6_A 267 ---IQEIADICEKY-NLWLHVDAAWGGGLLMSRKHRH--KLNGIERANSVTWNPHKMMGVL-LQCSAILVKEKGILQGCN 339 (511)
T ss_dssp ---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTCCC-SCCEEEEESSTTHHHHHH
T ss_pred ---HHHHHHHHHHc-CCEEEEEccchhhHhhChhhhh--hccCCccCCEEEECcccccCCC-cCeEEEEEeCHHHHHHHh
Confidence 99999999999 9999999999975542211111 1111123357788999999744 6688887754 4454432
Q ss_pred HHhhccc-----------------C----CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 326 KIQSQFT-----------------S----GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 326 ~~~~~~~-----------------~----~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
.....+. . ....+...++..++ +.++++++.++..++.+++.+.|+++||+++.
T Consensus 340 ~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~-----g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~ 414 (511)
T 3vp6_A 340 QMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAK-----GTVGFENQINKCLELAEYLYAKIKNREEFEMV 414 (511)
T ss_dssp CCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEES
T ss_pred ccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 2111000 0 01233344444444 25788999999999999999999999999987
Q ss_pred c---CCceEEEEEecCCccCCcccCC----CCCCChHHHHHHHHHhCCee
Q 014172 385 E---PQGAFYLFIDFSTYYGSEAEGF----GKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 385 ~---p~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~Ll~~~gV~ 427 (429)
. |..++.+|--.|........+. .......++.++|++++.+.
T Consensus 415 ~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~ 464 (511)
T 3vp6_A 415 FNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTM 464 (511)
T ss_dssp SSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred ecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEE
Confidence 5 6667655433333210000000 00001346888888885443
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-23 Score=204.51 Aligned_cols=214 Identities=14% Similarity=0.184 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH-----HHHcCCEEEEecC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-----ARIADATPVILPT 208 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~ 208 (429)
..+|++.++++. | .+++++++++++++.. +..++++||+|++++|+|.+.... ++..|++++.++.
T Consensus 69 ~~~l~~~la~l~----g----~~~~~~~~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~ 139 (400)
T 3nmy_A 69 RFAYERCVAALE----G----GTRAFAFASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDL 139 (400)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECT
T ss_pred HHHHHHHHHHHh----C----CCCEEEecCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECC
Confidence 345666666654 4 2367777777999997 677889999999999999965544 3446999999986
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
+ |++.+++++++++++|++++|+||||.+++ +++|.++|++| |+++|+|++|....+.. ++ .
T Consensus 140 ~-------d~~~l~~~i~~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~-g~~livDe~~~~~~~~~----~~-~-- 201 (400)
T 3nmy_A 140 T-------DPAAFKAAIRADTKMVWIETPTNPMLKLVD---IAAIAVIARKH-GLLTVVDNTFASPMLQR----PL-S-- 201 (400)
T ss_dssp T-------SHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHCC----GG-G--
T ss_pred C-------CHHHHHHHhccCCCEEEEECCCCCCCeeec---HHHHHHHHHHc-CCEEEEECCCcccccCC----hh-h--
Confidence 3 899999999999999999999999999998 99999999999 99999999998543221 11 1
Q ss_pred CCCCceEEEeccChhcccccceeeE--EE-cCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTGWRLGY--IA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G~R~G~--v~-~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
.+.++++.|++|.++.+|.++|+ ++ .++++++.+.......+.+.+.+...++...++. +....++..
T Consensus 202 --~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~-------l~~r~~~~~ 272 (400)
T 3nmy_A 202 --LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKT-------LPLRMRAHC 272 (400)
T ss_dssp --GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred --cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-------HHHHHHHHH
Confidence 24569999999999878878765 33 4778888888777666666777776666665543 445566678
Q ss_pred HHHHHHHHHhccCCCcee
Q 014172 366 ERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 366 ~~r~~l~~~L~~l~g~~~ 383 (429)
++...+.+.|++.|.+..
T Consensus 273 ~~a~~l~~~L~~~p~v~~ 290 (400)
T 3nmy_A 273 ENALALAQWLETHPAIEK 290 (400)
T ss_dssp HHHHHHHHHHTTCTTEEE
T ss_pred HHHHHHHHHHHcCCCEeE
Confidence 888889999988877654
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=216.80 Aligned_cols=256 Identities=14% Similarity=0.138 Sum_probs=172.8
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCC
Q 014172 130 PNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTR 209 (429)
Q Consensus 130 ~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 209 (429)
+.....++++.+++ + |. + +++++|+|+++++..++++++++||+|++++|+|.++...+...|++++.++..
T Consensus 55 ~~~~~~~~~~~la~-~----g~--~-~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~ 126 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-H----SD--Y-DGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETH 126 (446)
T ss_dssp CSSHHHHHHHHHCS-C----TT--E-EEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEE
T ss_pred cchHHHHHHHHHHh-c----CC--C-ceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCe
Confidence 44444566666665 4 42 2 689999999999999999999999999999999999999999999999999873
Q ss_pred CCCC----CCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCcc
Q 014172 210 ISEN----FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSF 284 (429)
Q Consensus 210 ~~~~----~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~ 284 (429)
.+++ +.+|++.| +.+++++|++++ +|+||.+++ +++|.++|++| |+++|+||+|+. +.|.+. +.+.
T Consensus 127 ~~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~-~~~livDea~~~~~~f~~~-~~~~ 197 (446)
T 2x3l_A 127 QSPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFN---VEEVIKSLHQL-NIPVLIDEAHGAHFGLQGF-PDST 197 (446)
T ss_dssp ECTTTSSEEEEEC----------CCEEEEES-SCTTSCCCC---HHHHHHHHHHT-TCCEEEECTTCTTTTSTTS-CCCG
T ss_pred eccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecC---HHHHHHHHHhc-CCeEEEcchhhhhhccCCC-CCCh
Confidence 2222 45788887 567899999998 556999999 89999999999 999999999996 445543 3333
Q ss_pred ccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHH--HHHHHhhcccC-CCchHHHHHHHHHHhcCCCChHH-HHHH
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA--ACNKIQSQFTS-GASSISQKAGVAALGLGYAGGEV-VSKM 360 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~--~l~~~~~~~~~-~~~~~~q~aa~~~l~~~~~~~~~-~~~~ 360 (429)
..+ +..+++.|+||.++ ++.++||+++++++++ .+......+.. +++.....++.++++. ..++ .+++
T Consensus 198 ~~~----g~Di~~~S~~K~l~-~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~---l~~~g~~~~ 269 (446)
T 2x3l_A 198 LNY----QADYVVQSFHKTLP-ALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQF---YKTYDSTLF 269 (446)
T ss_dssp GGG----TCSEEEECHHHHSS-SCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH---HHHCCCHHH
T ss_pred HHc----CCCEEEECCccccc-cccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHH---HHHhCHHHH
Confidence 332 23499999999764 4455899999877654 33322222222 3333333333233321 0110 1124
Q ss_pred HHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 361 VKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 361 ~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.++.++.++.+.+. |+++..+..+.++|+++++ .+..++++.|.++ ||.+
T Consensus 270 ~~~~~~l~~~l~~~-----g~~~~~~~~~~~l~i~~~~------------~~~~~l~~~L~~~-GI~v 319 (446)
T 2x3l_A 270 FAKRAQLIECLENK-----GFEMLQVDDPLKLLIKYEG------------FTGHDIQNWFMNA-HIYL 319 (446)
T ss_dssp HHHHHHHHHHHHHH-----TCEEEECSSTTEEEEECTT------------SCHHHHHHHHHHT-TEEE
T ss_pred HHHHHHHHHHHHHc-----CCEECcCCCCeEEEEEeCC------------cCHHHHHHHHHHC-CCEE
Confidence 44444555555554 6777666555679998873 2678999998887 9976
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-24 Score=214.55 Aligned_cols=261 Identities=13% Similarity=0.115 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChH-HHHHHHHHHhcC--CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSILQAVLAVCS--PGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~-~al~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 210 (429)
..++.+++.+++.+.+|. +++ +++|+|++ .++..++.++.. +|+.|+++.+.|+++...++..|++++.+++.+
T Consensus 131 ~~~~~~~~~~~la~~~g~--~~~-~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~ 207 (456)
T 2z67_A 131 MYALTNKILESFFKQLGL--NVH-AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVL 207 (456)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCE-EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHHHcCC--CCC-EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEec
Confidence 456778888888888885 334 99999999 455545555443 678899999999999999999999999998743
Q ss_pred -CCCCCCCHHHHHhhc-c----cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcc
Q 014172 211 -SENFLLDPKVLESKL-T----EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF 284 (429)
Q Consensus 211 -~~~~~~d~e~l~~~l-~----~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~ 284 (429)
++++.+|+++|++++ + .++.+|++++|+||||.+.+ +++|.++|++| |+++++|++|+.+.++- .+...
T Consensus 208 ~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~-g~~v~vD~A~~~~~~g~-~~~~~ 282 (456)
T 2z67_A 208 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYY-LEKLK 282 (456)
T ss_dssp ETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHH-HHHHH
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHc-CCcEEEECcchHHHHHh-hHHHH
Confidence 345779999999999 5 36777788999999999999 99999999999 99999999998754321 00011
Q ss_pred ccCCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
..+.. +..+++.|++|.++ .++++||+++ ++++++.+.........+.+.+.+.+++..+. .++++++.++
T Consensus 283 ~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l~-----~~~~~~~~~~ 354 (456)
T 2z67_A 283 KAFKY--RVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKN 354 (456)
T ss_dssp HHHTS--CCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HhhCC--CCCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 11111 23377899999765 6789999999 57787776432221111223444444444443 4678888999
Q ss_pred HHHHHHHHHHHhccCC---CceeecCCceEEEEEec--CCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 364 FRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDF--STYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
++++++++.+.|++++ |+.+..|+ ++ +++++ +. ...+++++|.++ ||
T Consensus 355 ~~~~~~~l~~~L~~~~~~~g~~v~~~~-~~-v~~~~~~~~-------------~~~~l~~~L~~~-gi 406 (456)
T 2z67_A 355 QKNSKKLLDELLNDLSKKTGGKFLDVE-SP-IASCISVNS-------------DPVEIAAKLYNL-RV 406 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCBCCCC-CS-SEEEEECSS-------------CHHHHHHHHHHT-TE
T ss_pred HHHHHHHHHHHHHhcccccCCEecCCC-Ce-EEEEEeccc-------------HHHHHHHHHHHc-CC
Confidence 9999999999999886 77777777 44 56666 31 246888888876 54
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=209.85 Aligned_cols=305 Identities=17% Similarity=0.200 Sum_probs=199.4
Q ss_pred HHHHHHHHHHhcCCC--eEEcCCCCCCCCChHHHHHHHH--HHHHcCCCCCCC--CCCCHHHHHHHHHHHHhhcCCCCCC
Q 014172 82 AITDQATALAQAGVS--VIRLAAGEPDFDTPVLIAEAGI--NAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTP 155 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~--~i~L~~g~~~~~~p~~v~~a~~--~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~ 155 (429)
++.+....+...+.. ...++.|.++...|+.+.+.+. +.+.. .+.|.+ .+|..++.+.+.+++.+.+|. ++
T Consensus 49 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~p~~v~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~la~~~g~--~~ 125 (438)
T 1wyu_A 49 KVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTA-YTPYQPEVSQGVLQATFEYQTMIAELAGL--EI 125 (438)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHC-CSCCSGGGCHHHHHHHHHHHHHHHHHHTS--SE
T ss_pred HHHHHHHHHHhcCcCccccccCCCccCCcCcHHHHHHHhcchhhhc-CCCCcchhhhhHHHHHHHHHHHHHHHhCC--Cc
Confidence 444555555554432 4578888888777877644442 22221 222321 456667777777777777774 56
Q ss_pred CcEEEecChHHHHHHHHHH-hcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCc
Q 014172 156 DQILVSNGAKQSILQAVLA-VCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRISENFLLDPKVLESKLTEKSR 230 (429)
Q Consensus 156 ~~i~~t~G~~~al~~~l~~-l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~ 230 (429)
+++++++|++.+++.++.+ .+++||+|+++.++|+.+...+ +..|++++.++. + ++.+|+++ ++++++
T Consensus 126 ~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~--~-~~~~d~~~----i~~~t~ 198 (438)
T 1wyu_A 126 ANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL--E-GGRTPLPE----VGEEVG 198 (438)
T ss_dssp ECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC--B-TTBCCCCC----CCTTEE
T ss_pred cceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC--c-CCccCHHH----hCCCeE
Confidence 7889999999444433333 2478999999999999988655 458999999997 2 34678776 677899
Q ss_pred EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccC---CcccccCCCCCCccccCCCCCCceEEEeccChhc---
Q 014172 231 LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEI---YEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF--- 304 (429)
Q Consensus 231 ~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Dea---y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~--- 304 (429)
+|++++| ||||.+.+ +++|+++|++| |+++|+|.. |+.+ . .... .+..+++.| +|.|
T Consensus 199 ~v~i~~p-n~tG~~~~---l~~i~~la~~~-g~~vivd~d~~a~g~~-----~--~~~~----~g~D~~~~s-~kk~~~~ 261 (438)
T 1wyu_A 199 AVVVQNP-NFLGALED---LGPFAEAAHGA-GALFVAVADPLSLGVL-----K--PPGA----YGADIAVGD-GQSLGLP 261 (438)
T ss_dssp EEEEESS-CTTSBCCC---HHHHHHHHHHT-TCEEEEECCTTGGGTB-----C--CHHH----HTCSEEEEE-CTTTTCC
T ss_pred EEEEECC-CCCeEEec---HHHHHHHHHHc-CCEEEEEechhhccCc-----C--CCcc----CCCCEEEEC-CcccCCC
Confidence 9999999 99999998 99999999999 999996622 3221 1 1111 233466666 6654
Q ss_pred -ccccceeeEEEcCHHHHHHHHHH-------------------------h-hcccCCC---chHHHHHHHHHHhcCCCCh
Q 014172 305 -AMTGWRLGYIAGPKHFVAACNKI-------------------------Q-SQFTSGA---SSISQKAGVAALGLGYAGG 354 (429)
Q Consensus 305 -~~~G~R~G~v~~~~~~~~~l~~~-------------------------~-~~~~~~~---~~~~q~aa~~~l~~~~~~~ 354 (429)
++.|+|+||+++++++++.+... + ...+.+. +.....++...+... ..
T Consensus 262 ~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~--~~ 339 (438)
T 1wyu_A 262 MGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL--GP 339 (438)
T ss_dssp CGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH--HH
T ss_pred ccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHh--CH
Confidence 46678999999998876654110 0 0111111 122222112113210 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 355 EVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.++++.++++++++++.+.|++++|+++..+. ++|.++.+... .+..+++++|.++ ||.+
T Consensus 340 ~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~L~~~-gi~v 400 (438)
T 1wyu_A 340 EGLREVALKSVEMAHKLHALLLEVPGVRPFTPK-PFFNEFALALP-----------KDPEAVRRALAER-GFHG 400 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS-SBCSEEEEECS-----------SCHHHHHHHHHHT-TCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC-CeEEEEEEeCC-----------CCHHHHHHHHHHC-Ccee
Confidence 568888999999999999999999899987654 34433333211 2678999999876 8876
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=202.65 Aligned_cols=294 Identities=14% Similarity=0.097 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC--------CcEEEecChHHHHHHHHHHhcC----
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP--------DQILVSNGAKQSILQAVLAVCS---- 177 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~--------~~i~~t~G~~~al~~~l~~l~~---- 177 (429)
|..+.+.+..++......|...++..++++.+++++.+.+|.+... ...++|+|+|+++..++.+..+
T Consensus 92 ~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~ 171 (481)
T 4e1o_A 92 PSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKIL 171 (481)
T ss_dssp HHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHH
Confidence 5666777777777666788888889999999999999999965322 3679999999999888877642
Q ss_pred ---------------CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC------CcEEEEcC
Q 014172 178 ---------------PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCS 236 (429)
Q Consensus 178 ---------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~------~~~i~l~~ 236 (429)
+++.|+++.++|.++...++..|++++.+|++ .++.+|+++|+++++++ +.+|+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~ 249 (481)
T 4e1o_A 172 EMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249 (481)
T ss_dssp HHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred HhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 56799999999999999999999999999985 45779999999999753 66778899
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
++|+||.+-+ +++|+++|++| |+|+++|++|+...+........ +.+......+..+++|.++.| ..+|+++.
T Consensus 250 ~~t~~G~id~---l~~I~~la~~~-~~~lhvDaA~g~~~~~~~~~~~~--~~gi~~aDsi~~~~hK~l~~p-~g~g~l~~ 322 (481)
T 4e1o_A 250 GTTGVCAFDC---LSELGPICARE-GLWLHIDAAYAGTAFLCPEFRGF--LKGIEYADSFTFNPSKWMMVH-FDCTGFWV 322 (481)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHH-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCCCCcCcCC---HHHHHHHHHHc-CCeEEeehhhHHHHHhChhhHHH--hcCcccCCEEEEChHHhcCCC-CceEEEEE
Confidence 9999999988 99999999999 99999999998754322111111 111112246778999999754 45677665
Q ss_pred C-HHHHHHHHHHhhcc-------------------cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhc
Q 014172 317 P-KHFVAACNKIQSQF-------------------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFG 376 (429)
Q Consensus 317 ~-~~~~~~l~~~~~~~-------------------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~ 376 (429)
. +..+.........+ +.....+.+.++..++. .+.++++.+++.++++++.+.|+
T Consensus 323 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~ 397 (481)
T 4e1o_A 323 KDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG-----VKNLQAHVRHGTEMAKYFESLVR 397 (481)
T ss_dssp SBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 44332211100000 00113444555555553 56788899999999999999999
Q ss_pred cCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 377 ELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 377 ~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
+++|+++..+....+++++++.. . ....++.++|.+++.+.
T Consensus 398 ~~~g~~~~~~~~~~~v~f~~~~~-~---------~~~~~l~~~L~~~g~~~ 438 (481)
T 4e1o_A 398 NDPSFEIPAKRHLGLVVFRLKGP-N---------SLTENVLKEIAKAGRLF 438 (481)
T ss_dssp TCTTEECCSCCCSSEEEEEESSC-H---------HHHHHHHHHHHHHCSSB
T ss_pred cCCCeEEecCCceeEEEEEeCCc-h---------HHHHHHHHHHHhCCeEE
Confidence 99999987655555678887532 0 13678999998885454
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.1e-25 Score=223.26 Aligned_cols=308 Identities=14% Similarity=0.106 Sum_probs=205.3
Q ss_pred hcCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+.+||+..|... ++. +|.+.+++.+++.++.....+.....+|.+.|++++ + ..+.+++++++++++
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~----p---~~~~v~~~nSGseA~ 169 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRF----P---SIDLVRFTNSGTEAN 169 (465)
Confidence 457889999998853 332 789999999888664322224444455666666554 2 346899999999999
Q ss_pred HHHHHHhc--CCCCEEEEcCCCCCChHHHHH----HcCC--EEEEecCCCCCCCCCCHHHHHhhcc---cCCcEEEEcCC
Q 014172 169 LQAVLAVC--SPGDEVIIPAPFWVSYPEMAR----IADA--TPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSP 237 (429)
Q Consensus 169 ~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~----~~g~--~~~~v~~~~~~~~~~d~e~l~~~l~---~~~~~i~l~~p 237 (429)
..+++... ..++.|++.+++|.++...+. ..|+ .++.+|. -|++.|+++++ +++++|++...
T Consensus 170 ~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi~epv 242 (465)
T 2yky_A 170 LMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAILVEPM 242 (465)
Confidence 99988753 345899999999988665443 1233 2233332 27899999887 57888877655
Q ss_pred CCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 238 SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 238 ~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
++++|.+. +.+.+++|.++|++| |+++|+||+|. +.++. ...+.. .+....+.||||.+| .|+|+||+++
T Consensus 243 ~~~~G~~~~~~~~l~~l~~l~~~~-g~llI~DEv~~-~r~g~--~~a~~~----~gv~pDi~t~sK~lg-~G~piG~v~~ 313 (465)
T 2yky_A 243 LGAGGCVPAERAFLDLLRAEASRC-GALLIFDEVMT-SRLSG--GGAQEM----LGISADLTTLGKYIG-GGMSFGAFGG 313 (465)
Confidence 66799655 678899999999999 99999999999 64321 111111 122234668999999 5999999999
Q ss_pred CHHHHHHHHH-----HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC---CceeecCCc
Q 014172 317 PKHFVAACNK-----IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQG 388 (429)
Q Consensus 317 ~~~~~~~l~~-----~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~---g~~~~~p~~ 388 (429)
++++++.+.. .....+++.+.+++.++.++|+. .++ +.+.++++++.+++.++|+++. ++....+..
T Consensus 314 ~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~---l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~ 388 (465)
T 2yky_A 314 RRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQ---IYT--RQAASDLSASGDRFRANLNRIAVENQAPLQFTGL 388 (465)
Confidence 9999998876 23345667889999999888875 222 2456666677777777776641 232223445
Q ss_pred eEEEEEecCC-ccCCcccCC-CCCCChHHHHHHHHHhCCeec
Q 014172 389 AFYLFIDFST-YYGSEAEGF-GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 389 ~~~~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|.++|+.+++ ......... .......+++++|+++ ||.+
T Consensus 389 G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~-GV~v 429 (465)
T 2yky_A 389 GSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRK-GIYL 429 (465)
Confidence 5567777753 100000000 0001256788998876 8875
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=194.96 Aligned_cols=216 Identities=12% Similarity=0.085 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEe-cC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVIL-PT 208 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v-~~ 208 (429)
..++++++++++. . . ..++++++++++..++.+++++||+|+++.++|.++...+ +..|++++.+ +.
T Consensus 60 ~~~l~~~la~~~g----~---~-~~v~~~sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 131 (421)
T 2ctz_A 60 VDVLEKRLAALEG----G---K-AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE 131 (421)
T ss_dssp HHHHHHHHHHHHT----C---S-EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT
T ss_pred HHHHHHHHHHHhC----C---C-ceEEecCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCC
Confidence 4678888888763 1 2 3455555699999999999999999999999999887664 7889999999 75
Q ss_pred CCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCC-cccccCCCCCCccccC
Q 014172 209 RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIY-EHIIYAPATHTSFASL 287 (429)
Q Consensus 209 ~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay-~~~~~~~~~~~~~~~~ 287 (429)
+ |++++++++++++++|++++|+||||.+++ +++|.++|++| |+++|+|++| ... +.+. ++ .
T Consensus 132 ~-------d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~-g~~livD~~~~~~g-~~~~---~~-~- 194 (421)
T 2ctz_A 132 E-------RPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGMGG-YLLR---PL-A- 194 (421)
T ss_dssp C-------CHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGGGG-TSCC---GG-G-
T ss_pred C-------CHHHHHHhhccCCeEEEEECCCCCCCcccC---HHHHHHHHHHc-CCEEEEECCccccc-ccCC---cc-c-
Confidence 2 899999999999999999999999999999 99999999999 9999999999 532 2221 11 1
Q ss_pred CCCCCceEEEeccChhcccccceeeEEEcC---HHH----HHHHHH----------------------H----hhcccCC
Q 014172 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGP---KHF----VAACNK----------------------I----QSQFTSG 334 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~---~~~----~~~l~~----------------------~----~~~~~~~ 334 (429)
.+.++++.|++|.++.+|.|+|++++. .++ .+.+.. . ....+..
T Consensus 195 ---~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~ 271 (421)
T 2ctz_A 195 ---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQA 271 (421)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCC
T ss_pred ---cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCC
Confidence 245699999999999899999998873 112 122211 0 0112223
Q ss_pred CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 335 ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 335 ~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
.+.+...++...++ .+....++..++.+.+.+.|+++|+++.+
T Consensus 272 ~~~~~a~~~~~~l~-------~l~~r~~~~~~~a~~l~~~L~~~p~v~~v 314 (421)
T 2ctz_A 272 LGPFEAWVVLLGME-------TLSLRAERHVENTLHLAHWLLEQPQVAWV 314 (421)
T ss_dssp CCHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCHHHHHHHHcCcc-------hHHHHHHHHHHhHHHHHHHHHhCCCeeEE
Confidence 44444444444443 24445566667888999999998888765
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=199.14 Aligned_cols=273 Identities=16% Similarity=0.160 Sum_probs=197.6
Q ss_pred ChHHHHH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-------C-CC
Q 014172 109 TPVLIAE-AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-------S-PG 179 (429)
Q Consensus 109 ~p~~v~~-a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-------~-~g 179 (429)
.|..+.. .+..........|...++..++.+.+.+++.+.+|.+ ++++++|+|+++++..++.++. + +|
T Consensus 120 ~~~~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~--~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G 197 (515)
T 2jis_A 120 DPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWS--SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRG 197 (515)
T ss_dssp CHHHHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCS--SCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHC
T ss_pred CHHHHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHhCCC--CCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcC
Confidence 3555544 3333333333456666677788888888888888854 6899999999999998888763 2 57
Q ss_pred C------EEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEEcCCCCCccCC
Q 014172 180 D------EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTE------KSRLLILCSPSNPTGSV 244 (429)
Q Consensus 180 d------~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~~ 244 (429)
| .|+++.+.|+++...++..|. +++.+|++ .++.+|+++|++++++ ++++|++++|+||||.+
T Consensus 198 ~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i 275 (515)
T 2jis_A 198 LRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAF 275 (515)
T ss_dssp GGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCB
T ss_pred ccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEecC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCc
Confidence 6 899999999999999999988 89999986 3577999999999975 48899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH--HHH
Q 014172 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVA 322 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~--~~~ 322 (429)
.+ +++|+++|++| |+|+++|++|+.+.+....... .+.+..+..+++.|++|.++ .+.++|+++++++ +++
T Consensus 276 ~~---l~~I~~la~~~-g~~l~vD~a~~~~~~~~~~~~~--~~~g~~~aD~v~~s~hK~l~-~p~g~G~l~~~~~~~~~~ 348 (515)
T 2jis_A 276 DP---LEAIADVCQRH-GLWLHVDAAWGGSVLLSQTHRH--LLDGIQRADSVAWNPHKLLA-AGLQCSALLLQDTSNLLK 348 (515)
T ss_dssp CC---HHHHHHHHHHH-TCEEEEEETTGGGGGGCTTTGG--GGTTGGGCSEEEECTTSTTC-CCSCCEEEEESCCSCHHH
T ss_pred cC---HHHHHHHHHHc-CCeEEEehhhhhHHHhChhhHh--hcCCCccCCEEEECcccccC-CCCCeeEEEEeChHHHHH
Confidence 98 99999999999 9999999999987654321111 12221244588999999987 4467999998765 655
Q ss_pred HHHH----Hh-hc-------ccC---------CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 014172 323 ACNK----IQ-SQ-------FTS---------GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (429)
Q Consensus 323 ~l~~----~~-~~-------~~~---------~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~ 381 (429)
.... .. .. +.. ....+.+.++..++. .+.++++.++..++++++.+.|++++|+
T Consensus 349 ~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg-----~~g~~~~~~~~~~~a~~l~~~L~~~~g~ 423 (515)
T 2jis_A 349 RCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG-----DQGLERRIDQAFVLARYLVEEMKKREGF 423 (515)
T ss_dssp HHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred HHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 4211 11 00 000 012344455555553 4567888889999999999999999899
Q ss_pred eeec-CCceEEEEEecC
Q 014172 382 KMSE-PQGAFYLFIDFS 397 (429)
Q Consensus 382 ~~~~-p~~~~~~~~~l~ 397 (429)
++.. |..+.++|..+|
T Consensus 424 ~~~~~~~~~~v~f~~~p 440 (515)
T 2jis_A 424 ELVMEPEFVNVCFWFVP 440 (515)
T ss_dssp EESSCCSSSEEEEEECC
T ss_pred EEeCCCCeeEEEEEEeC
Confidence 8874 455665554444
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-22 Score=201.70 Aligned_cols=293 Identities=12% Similarity=0.125 Sum_probs=202.9
Q ss_pred CChHHHHHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh----c------
Q 014172 108 DTPVLIAEAGINAIRE-GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV----C------ 176 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l----~------ 176 (429)
+.++.+++++.....+ ....|...++..++++.+.+++.+.+|.+ ..+++++|+|+++++..++.+. +
T Consensus 111 ~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~-~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~ 189 (497)
T 2qma_A 111 PLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLS-EKADGIFTSGGTQSNQMGLMLARDWIADKLSGH 189 (497)
T ss_dssp CBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCC-TTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCC-CCCCeEEcCCchHHHHHHHHHHHHHHHHhhccc
Confidence 3477777777655433 23345545566789999999999988853 2379999999999999888873 3
Q ss_pred ---CC------CC-EEEEcCCCCCChHHHHHHcCC---EEEEecCCCCCCCCCCHHHHHhhcccC----Cc--EEEEcCC
Q 014172 177 ---SP------GD-EVIIPAPFWVSYPEMARIADA---TPVILPTRISENFLLDPKVLESKLTEK----SR--LLILCSP 237 (429)
Q Consensus 177 ---~~------gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~l~~~----~~--~i~l~~p 237 (429)
.+ |+ .|+++.+.|.++...++..|. +++.+|++ .++.+|+++|+++++++ ++ +|+++++
T Consensus 190 ~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~--~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~ 267 (497)
T 2qma_A 190 SIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEGLIPFAIVGTAG 267 (497)
T ss_dssp CHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBC--TTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred chhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecC--CCCcCCHHHHHHHHHHHHHCCCcceEEEEcCC
Confidence 12 46 899999999999999999877 79999985 45779999999998753 44 7788999
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~ 317 (429)
+||||.+.+ +++|+++|++| |+++++|++|+.+.+... ... .+.+.....+++.|++|.++.+ .++||+++.
T Consensus 268 ~~~tG~~~~---l~~I~~l~~~~-~~~l~vD~a~~~~~~~~~-~~~--~~~gi~~~D~i~~s~hK~l~~p-~~~G~l~~~ 339 (497)
T 2qma_A 268 TTDHGAIDD---LDFIADMAVKH-DMWMHVDGAYGGALILSS-HKS--RLKGVERAHSISVDFHKLFYQT-ISCGALLVN 339 (497)
T ss_dssp CTTTCCBCC---HHHHHHHHHHH-TCEEEEEETTGGGGGGST-TGG--GGTTGGGCSEEEEETTTTTCCC-SSCEEEEES
T ss_pred CCCCCCCCC---HHHHHHHHHHc-CCEEEEehhhhHHHHhCc-chH--hhcCcccCCEEEEcchhccCCC-cceEEEEEe
Confidence 999999888 99999999999 999999999998765332 110 1111113347788999998844 799999875
Q ss_pred HH-HHHHHHHHhhcccCC----C-------------chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 318 KH-FVAACNKIQSQFTSG----A-------------SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 318 ~~-~~~~l~~~~~~~~~~----~-------------~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
++ .++.+.......... + ..+.+.++...+ ..++++++.++..++++++.+.|++++
T Consensus 340 ~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~l-----g~~g~~~~~~~~~~~a~~l~~~L~~~~ 414 (497)
T 2qma_A 340 DKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNV-----GPKALGDMYDHLLAQTLEVADMIRTND 414 (497)
T ss_dssp CGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 43 333221100000000 0 112222223222 357788889999999999999999988
Q ss_pred Cceee-cCCceEEEEEecCCccCCcccCCCCCCC----hHHHHHHHHHhCCeec
Q 014172 380 GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIEN----SESLCRYLLDKAQVLL 428 (429)
Q Consensus 380 g~~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~Ll~~~gV~v 428 (429)
++++. +|++++ +++++... + .+ ..++.+.|.++ |+.+
T Consensus 415 ~~~~~~~~~~~~-v~f~~~~~-~---------~~~~~l~~~l~~~l~~~-G~~~ 456 (497)
T 2qma_A 415 QFELLAEPSLST-VLFRATHE-T---------ADLDELNKALRLEALTR-GIAV 456 (497)
T ss_dssp TEEECSCCSSSE-EEEEECCS-S---------SCHHHHHHHHHHHHHHH-TSCB
T ss_pred CeEEEcCCCceE-EEEEEcCC-c---------cCHHHHHHHHHHHHHhC-CCEE
Confidence 99885 566665 55666431 0 01 24566777766 6653
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=205.80 Aligned_cols=305 Identities=12% Similarity=0.058 Sum_probs=204.7
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
.|+.+||+..|... ++. +|++.+++.+++.. ....|+. ....++++++++++.+..+ ...++|++++|++
T Consensus 61 dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~f~~sGs 137 (472)
T 1ohv_A 61 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLITMACGS 137 (472)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred CCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEEEeCCch
Confidence 57889999988753 443 78999999886532 1123432 3457899999998877654 2567999999999
Q ss_pred HHHHHHHHHhc--------C-----------------CC---CEEEEcCCCCCChHHHHH-HcCCEE-------------
Q 014172 166 QSILQAVLAVC--------S-----------------PG---DEVIIPAPFWVSYPEMAR-IADATP------------- 203 (429)
Q Consensus 166 ~al~~~l~~l~--------~-----------------~g---d~Vlv~~p~y~~~~~~~~-~~g~~~------------- 203 (429)
+++..+++.+. . +| +.|++.+++|+++...+. ..|...
T Consensus 138 eA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 138 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred hHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 99999998873 1 46 899999999998766543 333211
Q ss_pred EEecCC--C-CCC--C-----CCCHHHHHhhccc------CCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEE
Q 014172 204 VILPTR--I-SEN--F-----LLDPKVLESKLTE------KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVL 266 (429)
Q Consensus 204 ~~v~~~--~-~~~--~-----~~d~e~l~~~l~~------~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi 266 (429)
+.+|.. + ... + ..|++.|++++++ ++++|++...+|++|. +.+++.+++|.++|++| |+++|
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~-g~lli 296 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFL 296 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHh-CCEEE
Confidence 122210 0 000 0 1268899998876 7888888777888996 56899999999999999 99999
Q ss_pred EccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 014172 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 346 (429)
Q Consensus 267 ~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~ 346 (429)
+||+|.++.+.|. ...+..+.- ...+.+.||||.+ +.| ||++ ++++. .+.......+++.+.+++.++.++
T Consensus 297 ~DEv~~g~g~~g~-~~~~~~~gv--~~~~Di~t~sK~~-l~G---G~~~-~~~~~-~~~~~~~~~T~~~~~~~~aaa~aa 367 (472)
T 1ohv_A 297 VDEVQTGGGSTGK-FWAHEHWGL--DDPADVMTFSKKM-MTG---GFFH-KEEFR-PNAPYRIFNTWLGDPSKNLLLAEV 367 (472)
T ss_dssp EECTTTTTTTTSS-SSGGGGGCC--SSCCSEEEECGGG-SSE---EEEE-CGGGS-CSSSSSSCCSSSSCHHHHHHHHHH
T ss_pred EeCcccCCCCCCC-chhccccCC--CCCCCEEEEcccc-ccC---CccC-chhhc-ccccccccCccCccHHHHHHHHHH
Confidence 9999997655442 112222210 0002255899996 455 7876 65542 122222334556788999999888
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHhccC----CC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHH
Q 014172 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL----EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421 (429)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l----~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll 421 (429)
|+. ..+ +.+.++++++++++.+.|+++ ++ +...++.|.| ++++++.. .+..+++++|+
T Consensus 368 l~~---~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~-~~~~~~~~-----------~~~~~~~~~l~ 430 (472)
T 1ohv_A 368 INI---IKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTF-CSFDTPDE-----------SIRNKLISIAR 430 (472)
T ss_dssp HHH---HHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTE-EEEECSSH-----------HHHHHHHHHHH
T ss_pred HHH---HHh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceE-EEEEeCCh-----------hHHHHHHHHHH
Confidence 874 122 345677788888888887764 43 5445666655 56677531 13678999998
Q ss_pred HhCCeec
Q 014172 422 DKAQVLL 428 (429)
Q Consensus 422 ~~~gV~v 428 (429)
++ ||.+
T Consensus 431 ~~-Gv~~ 436 (472)
T 1ohv_A 431 NK-GVML 436 (472)
T ss_dssp HT-TEEC
T ss_pred HC-CeEE
Confidence 75 8875
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=193.04 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChH--HHHHHcC--CEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYP--EMARIAD--ATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~--~~~~~~g--~~~~~v~~~~ 210 (429)
.++.+++++.+.+.+|.. +.|++|+|++++++.++.. +.+||+|++.++.|.++. ..++..| .+++.++.+.
T Consensus 34 ~~~~~~~~~~l~~~~~~~---~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 109 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAE---AAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAER 109 (379)
T ss_dssp HHHHHHHHHHHHHHHTCS---EEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEE
T ss_pred HHHHHHHHHHHHHHhCCC---CEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccc
Confidence 467777777777777743 6889999999999988755 579999999999887754 3455566 4888887643
Q ss_pred CC------C-CCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCC
Q 014172 211 SE------N-FLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 282 (429)
Q Consensus 211 ~~------~-~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~ 282 (429)
.+ . ..+|++++++++. +++++|++++++||||.+++.+++++|.++|++| |+++|+|+++. . + ...
T Consensus 110 ~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~-~~~li~D~~~~-g---~-~~~ 183 (379)
T 3ke3_A 110 TEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSV-GGLLVIDCIAS-G---C-VWL 183 (379)
T ss_dssp SSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHT-TCEEEEECTTC-T---T-CCC
T ss_pred cccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHc-CCEEEEEeccc-C---C-ccc
Confidence 11 1 2479999999995 4899999999999999999999999999999999 99999999975 2 1 222
Q ss_pred ccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh----------------------hcccCCCchHHH
Q 014172 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ----------------------SQFTSGASSISQ 340 (429)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~----------------------~~~~~~~~~~~q 340 (429)
.+.. .+.++++.|++|.++ .+.++|++++++++++.+.... ..+..+++...+
T Consensus 184 ~~~~----~~~d~~~~s~~K~l~-~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~ 258 (379)
T 3ke3_A 184 DMKE----LGIDVLISAPQKGWS-STPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSL 258 (379)
T ss_dssp CHHH----HTCSEEEECTTTTTC-SCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHH
T ss_pred cccc----cCCCEEEecchhhcC-CCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHH
Confidence 2221 244588999999986 4456899999999888775411 001235677777
Q ss_pred HHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 341 KAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 341 ~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
.++.++|+. ..+ .++++.++++++++++.+.|+++ |+++..+.
T Consensus 259 ~a~~aal~~---~~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~~~~~~ 302 (379)
T 3ke3_A 259 RQFRDAILE---AKEIGFDILRDAQWELGNRVRKVLTDK-GIESVAAE 302 (379)
T ss_dssp HHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSBCT
T ss_pred HHHHHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHc-CCEecCCc
Confidence 777777764 233 36788899999999999999998 88776543
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=197.99 Aligned_cols=294 Identities=12% Similarity=0.037 Sum_probs=208.9
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCC-------CcEEEecChHHHHHHHHHHhcC-----
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP-------DQILVSNGAKQSILQAVLAVCS----- 177 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~-------~~i~~t~G~~~al~~~l~~l~~----- 177 (429)
|..+.+.+...+......|...++..++++.+++++.+.+|.+... ...++|+|+|+++..++.+..+
T Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 87 PAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 4556666777776656678778888999999999999999964221 3689999999998888777631
Q ss_pred --------------CCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC------CcEEEEcCC
Q 014172 178 --------------PGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCSP 237 (429)
Q Consensus 178 --------------~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~------~~~i~l~~p 237 (429)
+++.|+++.++|.++...++..|++++.+|++ .++ +|+++|+++++++ +.+|+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~ 243 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLG 243 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence 34689999999999999999999999999986 346 9999999999753 567788999
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~ 317 (429)
+|+||.+.+ +++|+++|++| |+++++|++|+...+........ +.+......+..+++|.++ ....+|+++..
T Consensus 244 ~t~~G~~~~---l~~I~~la~~~-~~~lhvD~A~~~~~~~~~~~~~~--~~gi~~~Ds~~~~~hK~l~-~p~g~g~l~~~ 316 (475)
T 3k40_A 244 TTNSCAFDY---LDECGPVGNKH-NLWIHVDAAYAGSAFICPEYRHL--MKGIESADSFNFNPHKWML-VNFDCSAMWLK 316 (475)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSGGGGGG--GTTGGGCSEEEECHHHHSS-CCSSCEEEEES
T ss_pred CCCCcCcCC---HHHHHHHHHHh-CCeEEEeHHhHHHHHhCHhhHHH--hcCcccCCEEEECchhccC-CCCceEEEEEe
Confidence 999999988 99999999999 99999999998754322111111 1111123477899999987 44567887764
Q ss_pred H-HHH-HHHHHHhhcc--------------cC-C---CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 318 K-HFV-AACNKIQSQF--------------TS-G---ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 318 ~-~~~-~~l~~~~~~~--------------~~-~---~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
+ +.+ +.+....... .. + ...+.+.+++..+. .+.++++.+++.++++++.+.|++
T Consensus 317 ~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g-----~~g~~~~~~~~~~~a~~l~~~L~~ 391 (475)
T 3k40_A 317 DPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG-----VENLQAHIRRHCNFAKQFGDLCVA 391 (475)
T ss_dssp SGGGC---------------------------CCCGGGTHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 332 2221100000 00 0 12333444444443 467888999999999999999999
Q ss_pred CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++|+++..+.....++++++.. . ....++.++|.+++++.+
T Consensus 392 ~~g~~l~~~~~~~iv~f~~~~~-~---------~~~~~l~~~L~~~g~~~~ 432 (475)
T 3k40_A 392 DSRFELAAEINMGLVCFRLKGS-N---------ERNEALLKRINGRGHIHL 432 (475)
T ss_dssp STTEEESSCCBTTEEEEEESSC-H---------HHHHHHHHHHHHHTSCBC
T ss_pred CCCEEEecCCceEEEEEEeCCc-h---------HHHHHHHHHHHhCCcEEE
Confidence 9999987655555577777531 0 136789999998865543
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=202.24 Aligned_cols=236 Identities=14% Similarity=0.062 Sum_probs=162.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH-HHHcCCEEEEecCCCCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM-ARIADATPVILPTRISE 212 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~ 212 (429)
..++++.+|+++ | ....+++++|+++++..++.+++++||+|+++.|+|.++... ++..|++++.++...+
T Consensus 175 i~e~e~~lA~~~----g---ae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~- 246 (730)
T 1c4k_A 175 AVAAEKHAARVY----N---ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN- 246 (730)
T ss_dssp HHHHHHHHHHHT----T---CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC-
T ss_pred HHHHHHHHHHHH----C---CCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc-
Confidence 467777777765 4 234688999999999999999999999999999999998887 8899999999986532
Q ss_pred CCC----CCHHHH-----HhhcccC------C----cEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc
Q 014172 213 NFL----LDPKVL-----ESKLTEK------S----RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273 (429)
Q Consensus 213 ~~~----~d~e~l-----~~~l~~~------~----~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~ 273 (429)
+|. +|+++| +++++++ + |++++++| ||+|.+.+ +++|+++|++| ++++|+||+|+.
T Consensus 247 ~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~-g~~livDeAh~~ 321 (730)
T 1c4k_A 247 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHL-CDYIEFDSAWVG 321 (730)
T ss_dssp TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGG-BSEEEEECTTCC
T ss_pred ccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHc-CCeEEEEccccc
Confidence 233 688888 8888765 5 89999999 58999998 99999999999 999999999974
Q ss_pred -cccCCCCC-CccccC---CCCCCceEEEeccChhcccccceee-EEEcCHHH---------HHHHHHHhh-cccCCCch
Q 014172 274 -IIYAPATH-TSFASL---PGMWERTLTVNGFSKAFAMTGWRLG-YIAGPKHF---------VAACNKIQS-QFTSGASS 337 (429)
Q Consensus 274 -~~~~~~~~-~~~~~~---~~~~~~~i~~~S~SK~~~~~G~R~G-~v~~~~~~---------~~~l~~~~~-~~~~~~~~ 337 (429)
+.|++... .+.... ..+..+++++.|+||.+ +|.+.| +++.+++. ...+..... ....+++.
T Consensus 322 ~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~ 399 (730)
T 1c4k_A 322 YEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFY 399 (730)
T ss_dssp GGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCH
T ss_pred ccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcH
Confidence 33443111 111111 22234679999999986 566654 55332221 122322221 22233455
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecC
Q 014172 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEP 386 (429)
Q Consensus 338 ~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p 386 (429)
....+..+++..- ..+...+..+++.++.+.+++.|++ ++|+++..|
T Consensus 400 ~~iaal~aA~~~l--~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p 447 (730)
T 1c4k_A 400 PMYAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVP 447 (730)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSC
T ss_pred HHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccc
Confidence 4444444444420 1213345566777778888888887 678877544
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=194.96 Aligned_cols=229 Identities=14% Similarity=0.126 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 214 (429)
.++++.+++++ |. .+.+++++|+++++..++.+++++||.|+++.|+|.++...+...|++++.++...+ ++
T Consensus 208 ~~~ee~la~l~----G~---d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-~~ 279 (755)
T 2vyc_A 208 GESEKYAARVF----GA---DRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-RY 279 (755)
T ss_dssp HHHHHHHHHHH----TC---SEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-TT
T ss_pred HHHHHHHHHHh----CC---CceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-cc
Confidence 45555555554 42 356889999999999999999999999999999999999999999999999987642 23
Q ss_pred C----C-----CHHHHHhhccc--CCc--------EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCccc-
Q 014172 215 L----L-----DPKVLESKLTE--KSR--------LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHI- 274 (429)
Q Consensus 215 ~----~-----d~e~l~~~l~~--~~~--------~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~- 274 (429)
+ + |++.|++++++ +++ ++++++| ||+|.+++ +++|+++|++| ++++++|++|+..
T Consensus 280 g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~-~~~livDeA~~~~~ 354 (755)
T 2vyc_A 280 GIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKT-SDRLHFDEAWYGYA 354 (755)
T ss_dssp SCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTT-CSEEEEECTTCTTG
T ss_pred ccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHc-CCEEEEECcCchhc
Confidence 3 4 99999999864 444 8899998 79999998 89999999999 9999999999853
Q ss_pred ccCCC--CCCcccc--CCCCCCceEEEeccChhcccccce-eeEEEcCHH---H-HHHHHHHh-hcccCCCchHHHHHHH
Q 014172 275 IYAPA--THTSFAS--LPGMWERTLTVNGFSKAFAMTGWR-LGYIAGPKH---F-VAACNKIQ-SQFTSGASSISQKAGV 344 (429)
Q Consensus 275 ~~~~~--~~~~~~~--~~~~~~~~i~~~S~SK~~~~~G~R-~G~v~~~~~---~-~~~l~~~~-~~~~~~~~~~~q~aa~ 344 (429)
.+++. ....+.. .+...++++++.|+||.+ +|.+ .|+++++++ + ...+.... .....+++.+...+..
T Consensus 355 ~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~ 432 (755)
T 2vyc_A 355 RFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLL--NALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASND 432 (755)
T ss_dssp GGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSS--SCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHH
T ss_pred ccCcccCCcchhcCCcCCccCCCeEEEECccccc--cCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34321 1122211 111246778999999986 5666 566666443 1 12333222 2223345555555555
Q ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 345 AALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 345 ~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
+++..-. .+...+..+++.++.+.+++.|++++|
T Consensus 433 aA~~~l~--~~gg~~~~~~~~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 433 VAVSMMD--GNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_dssp HHHHHHS--THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5554210 111334455555566666666655544
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-19 Score=183.67 Aligned_cols=225 Identities=13% Similarity=0.145 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 213 (429)
..++++.+|++++ ....+++++|++.++..++.+++++||.|+++.++|.++...+.+.|++++.++... +.
T Consensus 197 i~eaE~~lA~~fG-------a~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~~ 268 (715)
T 3n75_A 197 HKEAEQYIARVFN-------ADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-NA 268 (715)
T ss_dssp HHHHHHHHHHHHT-------CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-CT
T ss_pred HHHHHHHHHHHhC-------CCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-cc
Confidence 4678888888764 345677888889999999999999999999999999999999999999999998764 34
Q ss_pred CCC---------CHHHHHhhccc--CCc---EEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc-cCC
Q 014172 214 FLL---------DPKVLESKLTE--KSR---LLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAP 278 (429)
Q Consensus 214 ~~~---------d~e~l~~~l~~--~~~---~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~-~~~ 278 (429)
+++ |++.|++++++ ++| ++++++| ||+|.+++ +++|+++|+++ + +++||+|+... |++
T Consensus 269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d---l~~I~ela~~~-~--livDEAH~~~~~f~~ 341 (715)
T 3n75_A 269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN---TDFIKKTLDVK-S--IHFDSAWVPYTNFSP 341 (715)
T ss_dssp TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC---HHHHHHHCCCS-E--EEEECTTCTTGGGSG
T ss_pred cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC---HHHHHHHhCcC-c--EEEccccccccccCC
Confidence 543 89999999974 344 8999999 99999999 88888888766 4 78899998643 443
Q ss_pred CCC-CccccCCCCCCce-EEEeccChhcccccc-eeeEEEcCHHH-HHHHHHHhhcc-cCCCchHHHHHHHHHHhcCCCC
Q 014172 279 ATH-TSFASLPGMWERT-LTVNGFSKAFAMTGW-RLGYIAGPKHF-VAACNKIQSQF-TSGASSISQKAGVAALGLGYAG 353 (429)
Q Consensus 279 ~~~-~~~~~~~~~~~~~-i~~~S~SK~~~~~G~-R~G~v~~~~~~-~~~l~~~~~~~-~~~~~~~~q~aa~~~l~~~~~~ 353 (429)
... .+........+.+ ++++|+||+++ |+ ..||+.++.++ ...+.+..... +.+++.+..+++.+++.. .
T Consensus 342 ~~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~---~ 416 (715)
T 3n75_A 342 IYEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAM---M 416 (715)
T ss_dssp GGTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHH---H
T ss_pred ccccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHH---H
Confidence 211 1111111012443 66999999975 43 35788776542 22333333323 344666665555555542 1
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHhccC
Q 014172 354 G-EVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 354 ~-~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
. ..-.+++++..++.+.+++.|+++
T Consensus 417 ~~~~g~~~~~~l~~~a~~~r~~L~~i 442 (715)
T 3n75_A 417 KGNAGKRLINGSIERAIKFRKEIKRL 442 (715)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 1 123345566666666666666654
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.8e-17 Score=159.16 Aligned_cols=289 Identities=9% Similarity=0.047 Sum_probs=185.9
Q ss_pred CCCCChHHHHHHHHHHHHcCC----CCCC-CCCC--CHHHHHHHHHHHHhhcCCCCCCCcEEE-ecChHHHHHHHHHHhc
Q 014172 105 PDFDTPVLIAEAGINAIREGF----TRYT-PNAG--TLELRSAICHKLKEENGLSYTPDQILV-SNGAKQSILQAVLAVC 176 (429)
Q Consensus 105 ~~~~~p~~v~~a~~~~~~~~~----~~Y~-~~~G--~~~lr~~ia~~l~~~~g~~~~~~~i~~-t~G~~~al~~~l~~l~ 176 (429)
...+.|++|++++.+.+.+.. .-+. ...+ ..++.+...+.+.+..|.+ ++++|++ |.|+|+++++++..++
T Consensus 20 t~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~-~~~evif~t~~~T~a~n~a~~~l~ 98 (377)
T 3e77_A 20 FQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVP-DNYKVIFLQGGGCGQFSAVPLNLI 98 (377)
T ss_dssp CSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHHHHHHHHHG
T ss_pred ccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCCeEEEEcCchHHHHHHHHHhcc
Confidence 345668999999998764311 0000 0011 1233333444444445532 2357888 5789999999999998
Q ss_pred CC--CCEEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHH
Q 014172 177 SP--GDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDE 252 (429)
Q Consensus 177 ~~--gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~ 252 (429)
.+ ||+|++..-++.+. ...++..|..++.++.+. ++..+++.++..+++++++|.+++..|.||+++| +
T Consensus 99 ~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~--~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~p---i-- 171 (377)
T 3e77_A 99 GLKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLG--SYTKIPDPSTWNLNPDASYVYYCANETVHGVEFD---F-- 171 (377)
T ss_dssp GGSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCS--SSCSCCCGGGCCCCTTCSCEEEESEETTTTEECS---S--
T ss_pred CCCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCC--CcCCCCChHHhccCCCccEEEEeCccCchheEch---h--
Confidence 65 89988766544432 344566788877777643 3446778888888899999999988889999999 4
Q ss_pred HHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHH--------
Q 014172 253 IARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC-------- 324 (429)
Q Consensus 253 I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l-------- 324 (429)
+|+++ ++++++|.+.+. +..+..+..+ + +.+.|-.|.+|.+| +|+++..+++++.+
T Consensus 172 ---i~~~~-~~~~~vD~~q~~----g~~~id~~~~----~--~~~~s~~K~~gp~G--~g~l~~~~~~l~~~~~~~p~~~ 235 (377)
T 3e77_A 172 ---IPDVK-GAVLVCDMSSNF----LSKPVDVSKF----G--VIFAGAQKNVGSAG--VTVVIVRDDLLGFALRECPSVL 235 (377)
T ss_dssp ---CCCCT-TCCEEEECTTTT----TSSCCCGGGC----S--EEEEEGGGTTSCTT--CEEEEEETTSCSCCCTTSCGGG
T ss_pred ---hhccC-CCEEEEEccccc----CCCCCchhhc----C--EEEEecccccCCCc--cEEEEEcHHHHhhccCCCCchh
Confidence 46788 999999999886 3333344332 3 46788999999777 68887765543211
Q ss_pred --HHH--hhcccCCCchHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHhccCCCceeec----CCceEEEEEe
Q 014172 325 --NKI--QSQFTSGASSISQKAGVAALGLGYAGGE-VVSKMVKAFRERRDFLVKSFGELEGVKMSE----PQGAFYLFID 395 (429)
Q Consensus 325 --~~~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~----p~~~~~~~~~ 395 (429)
... ......+++....+++.++|+.- .+. .++.+.++.++..+++++.|++++|+.+.. ..++..+.+.
T Consensus 236 ~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l--~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~ 313 (377)
T 3e77_A 236 EYKVQAGNSSLYNTPPCFSIYVMGLVLEWI--KNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFR 313 (377)
T ss_dssp CHHHHHTTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEE
T ss_pred hHHHHhhcCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEE
Confidence 111 11122345666666666677630 123 578899999999999999999998887532 1234446677
Q ss_pred cCCccCCcccCCCCCCC-hHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIEN-SESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~-~~~~~~~Ll~~~gV~v 428 (429)
+++.-. -.+ ...+..+|.+ .||.+
T Consensus 314 ~~~~~~--------~~~~~~~~l~~l~~-~Gi~~ 338 (377)
T 3e77_A 314 IGNAKG--------DDALEKRFLDKALE-LNMLS 338 (377)
T ss_dssp ESSTTC--------CHHHHHHHHHHHHH-TTEES
T ss_pred cCCCCC--------chhHHHHHHHHHHH-CCcEE
Confidence 775200 000 1356666654 58875
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.4e-16 Score=150.10 Aligned_cols=290 Identities=13% Similarity=0.152 Sum_probs=185.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC----CCCC-CCCC--CHHHHHHHHHHHHhhcCCCCCCCcEEE-ecChHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF----TRYT-PNAG--TLELRSAICHKLKEENGLSYTPDQILV-SNGAKQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~----~~Y~-~~~G--~~~lr~~ia~~l~~~~g~~~~~~~i~~-t~G~~~a 167 (429)
++++|+.|-. +.|++|++++.+.+.+.. .-|. ...+ ..++.+...+.+.+..|.+ ++++|++ |+|+|++
T Consensus 5 ~~~~f~pgpt--~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~-~~~~v~f~t~~~T~a 81 (361)
T 3m5u_A 5 RKINFSAGPS--TLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELN-DDYEVLFLQGGASLQ 81 (361)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceEeecCCCC--CCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCC-CCceEEEEcCcHHHH
Confidence 4667766653 468899999988764211 0000 0011 1233333334444445532 2457887 9999999
Q ss_pred HHHHHHHhcCCCCEEE-EcCCCCC-ChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 168 ILQAVLAVCSPGDEVI-IPAPFWV-SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vl-v~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
+++++..++ +||+++ +..-.|. .+...++..|+++..++.+..+.+.++++. + +++++++|.+++..|.||+++
T Consensus 82 ~n~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~tG~~~ 157 (361)
T 3m5u_A 82 FAMIPMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTIYGTQY 157 (361)
T ss_dssp HHHHHHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETTTTEEC
T ss_pred HHHHHHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCCcceeC
Confidence 999999998 888653 2222222 223456678999999998754333246666 3 888999999998888999987
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
+. ++ ++ ++++++|.+.+. +..+..+.. -.+++.|..|.+|.+| +|+++.++++.+.+.
T Consensus 158 ~~--------i~-~~-~~~~~vD~~q~~----g~~~id~~~------~d~~~~s~~K~~gp~G--~g~l~~~~~~~~~~~ 215 (361)
T 3m5u_A 158 QN--------YP-KT-KTPLIVDASSDF----FSRKVDFSN------IALFYGGVQKNAGISG--LSCIFIRKDMLERSK 215 (361)
T ss_dssp SS--------CC-CC-SSCEEEECGGGT----TSSCCCCTT------EEEEEEETTTTSSCTT--CEEEEEEHHHHHHHH
T ss_pred Cc--------cc-cc-CCEEEEEccccc----CCCCCCccc------CCEEEEechhccCCCc--cEEEEEcHHHHhhhc
Confidence 72 23 36 899999999875 333333322 2378889999998777 799999988876654
Q ss_pred H-----------H--hhcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCc-eeec-C--
Q 014172 326 K-----------I--QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMSE-P-- 386 (429)
Q Consensus 326 ~-----------~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~-~~~~-p-- 386 (429)
. . ......+++.....++.++++. ..+ .++++.++.++.++++++.|++++|+ .... +
T Consensus 216 ~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~---l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~ 292 (361)
T 3m5u_A 216 NKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDW---LLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKD 292 (361)
T ss_dssp TCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGG
T ss_pred CCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHH---HHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHH
Confidence 3 0 1111234566666666677764 222 37888899999999999999999766 5432 2
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.....+.+.+++.. .-..++...| ++.||.+
T Consensus 293 rs~~ivsf~~~~~~----------~~~~~~~~~L-~~~gI~~ 323 (361)
T 3m5u_A 293 RSLMNVSFNIAKNK----------DLEPLFVKEA-EEAGMIG 323 (361)
T ss_dssp BCSSEEEEEESSCT----------THHHHHHHHH-HHTTEEC
T ss_pred cCCeEEEEECCCch----------hhhHHHHHHH-HHCCCEE
Confidence 22344667776410 0124677655 5559875
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-15 Score=148.85 Aligned_cols=258 Identities=16% Similarity=0.162 Sum_probs=166.6
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+.+||+..|. ..++- +|++.+++.++++++.+...+..-..+|.+.|++.+ + ..+.|+++++++++.
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~----p---~~~~v~f~~SGsEA~ 156 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERF----P---QIEQLRFTNSGTEAN 156 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHS----T---TCSEEEEESSHHHHH
T ss_pred CCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhC----C---CCCEEEEeCchHHHH
Confidence 3678899998775 33443 799999999998875433333333345555555543 2 457999999999999
Q ss_pred HHHHHHhcC--CCCEEEEcCCCCCChHHHHH------HcCCEEEEecCCCCCCCCCCHHHHHhhccc---CCcEEEEcCC
Q 014172 169 LQAVLAVCS--PGDEVIIPAPFWVSYPEMAR------IADATPVILPTRISENFLLDPKVLESKLTE---KSRLLILCSP 237 (429)
Q Consensus 169 ~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~------~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~---~~~~i~l~~p 237 (429)
..+++.... ..++|+..+-+|.+....+. ........+|. + |++.+++.+.. ++.+|++...
T Consensus 157 e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~---n----d~~~l~~~l~~~~~~iAavIvEPv 229 (454)
T 4ao9_A 157 LMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY---N----DAQTARAQIERHGPEIAVVLVEPM 229 (454)
T ss_dssp HHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT---T----CHHHHHHHHHHTGGGEEEEEECSE
T ss_pred HHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC---c----hHHHHHHHHhhcCCceEEEEeccc
Confidence 999887642 23678888888876432211 11123334442 1 78888888753 4556666544
Q ss_pred CCCccCCC-CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 238 SNPTGSVY-PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 238 ~NPtG~~~-~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
+...|.+. +++.+++|.++|++| |+++|.||++.+ .. +.. .....+.-..| +.+++|.+| .|+.+|.+++
T Consensus 230 ~g~~G~~~p~~~fL~~lr~lc~~~-g~lLI~DEV~tG-R~-G~~-~a~e~~gv~PD----i~t~gK~lg-gG~Piga~~~ 300 (454)
T 4ao9_A 230 QGASGCIPGQPDFLQALRESATQV-GALLVFDEVMTS-RL-APH-GLANKLGIRSD----LTTLGKYIG-GGMSFGAFGG 300 (454)
T ss_dssp ESTTTCEECCHHHHHHHHHHHHHH-TCEEEEECTTGG-GG-STT-CHHHHHTCCCS----EEEEEGGGG-TTSSCEEEEE
T ss_pred cCCCCccCCchhhHHHHHHHHhhc-CCEEEEECCCcC-CC-ccc-cchhccCCCCc----EEEeccccC-CCCcceeeee
Confidence 55577554 577899999999999 999999999974 22 211 11111111112 456899998 8899999999
Q ss_pred CHHHHHHHHHHh----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 317 PKHFVAACNKIQ----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 317 ~~~~~~~l~~~~----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.+++++.+.... ...+++.++++.+++.+.|+.-. .++.+ +..+++-+++.++|++
T Consensus 301 ~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~-~~~~~----~~~~~~g~~l~~~L~~ 360 (454)
T 4ao9_A 301 RADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF-TPEAA----GALAERGEALRARLNA 360 (454)
T ss_dssp CHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS-CHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh-ccChh----HHHHHHHHHHHHHHHH
Confidence 999988775321 23455678889999998887522 13333 3344444444444443
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-16 Score=151.61 Aligned_cols=277 Identities=9% Similarity=0.050 Sum_probs=178.3
Q ss_pred CChHHHHHHHHHHHHcCC---------CCCCC--CCCCHHHHHHHHHHHHhhcCCCCC-CCcEEE-ecChHHHHHHHHHH
Q 014172 108 DTPVLIAEAGINAIREGF---------TRYTP--NAGTLELRSAICHKLKEENGLSYT-PDQILV-SNGAKQSILQAVLA 174 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~---------~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~-~~~i~~-t~G~~~al~~~l~~ 174 (429)
+.|++|++++.+.+.+.. ...++ ..-..+.|+.++++++ .+ +++|++ |.|+|+++++++..
T Consensus 37 ~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~------~~~~~evif~t~~~T~a~n~ai~~ 110 (386)
T 3qm2_A 37 MLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLN------IPSNYKVLFCHGGGRGQFAGVPLN 110 (386)
T ss_dssp CCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHT------CCTTEEEEEEESCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhC------CCCCceEEEEcCCchHHHHHHHHh
Confidence 468899999877653210 01111 1345678888888874 23 247888 68999999999999
Q ss_pred hcCCCCEEEEcCCCCCC--hHHHHHHcCCEEEEecCC-CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCC-CCHHHH
Q 014172 175 VCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTR-ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSV-YPKNLL 250 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~-~~~~~l 250 (429)
++++||+|++..-++.+ +...++..| ++..++.+ .+.+..++++.++.++++++++|.+++..|.||++ .| +
T Consensus 111 l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG~~i~p---i 186 (386)
T 3qm2_A 111 LLGDKTTADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAIDE---T 186 (386)
T ss_dssp HCTTCCEEEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTTEECCC---C
T ss_pred ccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcCEecCc---h
Confidence 99999997654433333 234456678 89888875 12333368888888999999999998888899996 77 5
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH-----
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN----- 325 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~----- 325 (429)
++|. + ++++++|.+++. |..+..+..+ + +.+.|..|.+|.+| +|+++.++++.+.+.
T Consensus 187 ~~i~-----~-g~~~~vDa~qs~----g~~pidv~~~----~--~~~~s~hK~lGP~G--~g~l~v~~~~~~~~~~~~p~ 248 (386)
T 3qm2_A 187 PDFG-----P-EVVVTADFSSTI----LSAPLDVSRY----G--VIYAGAQKNIGPAG--LTLVIVREDLLGKAHESCPS 248 (386)
T ss_dssp CCCC-----T-TCCEEEECTTTT----TSSCCCGGGC----S--EEEEETTTTTCCTT--EEEEEEEGGGCSCCCTTSCG
T ss_pred hhhc-----C-CCEEEEEccccc----CCCCCCcccc----C--EEEEecccccCCCc--cEEEEECHHHHhhhcccCCc
Confidence 5553 7 899999999876 3334444433 2 46688999998777 788888766532111
Q ss_pred -----HH-h-hcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCCc-eee-c--CCceEEE
Q 014172 326 -----KI-Q-SQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEGV-KMS-E--PQGAFYL 392 (429)
Q Consensus 326 -----~~-~-~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g~-~~~-~--p~~~~~~ 392 (429)
.. . .....+++.+...++.++++. ..+ .++++.++.++.++++++.|+++ |+ ... . ..+...+
T Consensus 249 ~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~---~~~~gG~~~i~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~rs~~iv 324 (386)
T 3qm2_A 249 ILDYTVLNDNDSMFNTPPTFAWYLSGLVFKW---LKAQGGVAAMHKINQQKAELLYGVIDNS-DFYRNDVAQANRSRMNV 324 (386)
T ss_dssp GGCHHHHHHC-------CCSHHHHHHHHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHTC-SSEECCBCGGGBCSSEE
T ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCHHHcCceEE
Confidence 11 1 111123555566666666664 233 48888899999999999999988 55 221 1 1233456
Q ss_pred EEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+++. + -..++..+| ++.||.+
T Consensus 325 ~f~~~~~-~----------~~~~~~~~L-~~~gI~~ 348 (386)
T 3qm2_A 325 PFQLADN-T----------LDKVFLEES-FAAGLHA 348 (386)
T ss_dssp EEEESSG-G----------GHHHHHHHH-HHTTEEC
T ss_pred EEECCCc-c----------ccHHHHHHH-HHCCCEE
Confidence 6777641 0 135677775 4558875
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-14 Score=139.37 Aligned_cols=325 Identities=14% Similarity=0.070 Sum_probs=199.2
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCC------CCCCC-CCCCHHHHHHH
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF------TRYTP-NAGTLELRSAI 141 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~------~~Y~~-~~G~~~lr~~i 141 (429)
+..++...|.....|.....+.+ .-|.|=..++. +++.+.+++-..+.+.+ .+|.. ..-..++....
T Consensus 32 ~~~l~~~Dpei~~~i~~E~~RQ~----~~ieLIASEN~--~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la 105 (490)
T 3ou5_A 32 QESLSDSDPEMWELLQREKDRQC----RGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLC 105 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHH----HSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHH
T ss_pred ccchhhhCHHHHHHHHHHHHHHH----cCceEecCCCc--CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHH
Confidence 44555555544433333333322 35888888876 45677777776665422 12222 22234555555
Q ss_pred HHHHHhhcCCCCCCC--cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH--------HHcCC--EEEEecCC
Q 014172 142 CHKLKEENGLSYTPD--QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIADA--TPVILPTR 209 (429)
Q Consensus 142 a~~l~~~~g~~~~~~--~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~--------~~~g~--~~~~v~~~ 209 (429)
.++..+.||.....+ ||-.- +++.+...++.++++|||+|+-.+..+.++...- ...|. +.+.++++
T Consensus 106 ~~rak~lF~a~~A~w~VNVQP~-SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd 184 (490)
T 3ou5_A 106 QRRALEAFDLDPAQWGVNVQPY-SGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLN 184 (490)
T ss_dssp HHHHHHHTTCCTTTEEEECCCS-SHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEE
T ss_pred HHHHHHHhCCCccccCCCCCcC-CHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccC
Confidence 677778888654433 44444 4556677799999999999999998777665322 12222 34455555
Q ss_pred CCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCccccC
Q 014172 210 ISENFLLDPKVLESKLTE-KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASL 287 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~~ 287 (429)
++ +..+|.|++++.... ++|+|+.-.-.+| ..++ ++++.++|++. |.+++.|-+|.. ++-+| .+++....
T Consensus 185 ~~-t~~IDyd~~~~~A~~~kPklIi~G~SaY~--r~id---~~~~reIAd~v-GA~Lm~DmAHiaGLVA~g-~~psP~~~ 256 (490)
T 3ou5_A 185 PK-TGLIDYNQLALTARLFRPRLIIAGTSAYA--RLID---YARMREVCDEV-KAHLLADMAHISGLVAAK-VIPSPFKH 256 (490)
T ss_dssp TT-TTEECHHHHHHHHHHHCCSEEEECCSSCC--SCCC---HHHHHHHHHHH-TCEEEEECGGGHHHHHTT-SSCCGGGT
T ss_pred CC-CCcccHHHHHHHHhhcCCCeEEECCccCc--cccC---HHHHHHHHhhc-ccEEEechhhhhhhhccc-ccCCcccc
Confidence 43 467999999987754 8999886333333 3556 88888899998 999999999874 33333 33333322
Q ss_pred CCCCCceEEEeccChhcccccceeeEEEcCH---------------HHHHHHHHHhhcccCCCchHHHHHHHH-HHhcCC
Q 014172 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGY 351 (429)
Q Consensus 288 ~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~---------------~~~~~l~~~~~~~~~~~~~~~q~aa~~-~l~~~~ 351 (429)
..|+..|.+|+| +|.|.|.+++.+ ++.+.+.+...+...+.+..-..|+.+ ++...
T Consensus 257 -----ADvVTtTTHKTL--rGPrGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea- 328 (490)
T 3ou5_A 257 -----ADIVTTTTHKTL--RGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA- 328 (490)
T ss_dssp -----CSEEEEESSSTT--CSCSCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH-
T ss_pred -----ceEEeccccccc--cCCCceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHH-
Confidence 238899999998 799999999765 466777776665555555444444443 23321
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 352 AGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 352 ~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.....+...+...++.+.|.+.|.+. |++++. ...+..+++++... + -...-++++|++.||.++
T Consensus 329 -~~p~fk~Ya~qVv~NAkaLA~~L~~~-G~~vvsGgTdnHlvLvDl~~~-g----------~tG~~ae~~Le~agItvN 394 (490)
T 3ou5_A 329 -CTPMFREYSLQVLKNARAMADALLER-GYSLVSGGTDNHLVLVDLRPK-G----------LDGARAERVLELVSITAN 394 (490)
T ss_dssp -HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG-T----------CCHHHHHHHHHHTTEECE
T ss_pred -HhHhHHHHHHHHHHHHHHHHHHHHhC-CCeeecCCCCceEEEEecccc-C----------CCHHHHHHHHHHcCcEEC
Confidence 13456778888889999999999987 888863 34456688888643 1 234666677888899874
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=139.07 Aligned_cols=248 Identities=19% Similarity=0.191 Sum_probs=163.9
Q ss_pred HHHHHHH-HHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCC----CCEEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 014172 136 ELRSAIC-HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP----GDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (429)
Q Consensus 136 ~lr~~ia-~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~----gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 210 (429)
.|.+.++ +|+. ..|++ .....++++|+|.++..++.+.+++ ||.||++..+|.+....+.++|+++++++...
T Consensus 116 ~ltn~l~ld~L~-~~G~~-~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~ 193 (501)
T 3hl2_A 116 KITNSLVLDIIK-LAGVH-TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVL 193 (501)
T ss_dssp HHHHHHHHHHHH-HTTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEE
T ss_pred HHHHHHHHHHHH-HcCCC-CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeee
Confidence 4555555 4554 44865 3357999999998888777777764 49999999999999999999999999997632
Q ss_pred C-CCCCCCHHHHHhhccc---CCcEEEEc-CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc-cCCCCCCcc
Q 014172 211 S-ENFLLDPKVLESKLTE---KSRLLILC-SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSF 284 (429)
Q Consensus 211 ~-~~~~~d~e~l~~~l~~---~~~~i~l~-~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~ 284 (429)
+ +...+|++.|+++|++ +..++++. .+.|-.|.+-+ +++|+++|++| |+++++|+||+... +....+.+.
T Consensus 194 d~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd---I~eIaeIch~~-gIpllVDeAhGah~~~~~~lp~sA 269 (501)
T 3hl2_A 194 EGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR---LEELAVICANY-DIPHIVNNAYGVQSSKCMHLIQQG 269 (501)
T ss_dssp ETTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTCTTCHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc---HHHHHHHHHHc-CCeEEEeCcchhhhhhhhhhHHHH
Confidence 2 3467899999999964 33444444 44554456667 99999999999 99999999998532 211111122
Q ss_pred ccCCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
.++. .-++++.|.+|.+-++ +..|.+.. ++++++.+........ ...++....+..+.. +.+.++++.++
T Consensus 270 ~~~G---rAD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~yPGr~--S~Spsldl~~tLL~l---Gr~Gy~~ll~e 340 (501)
T 3hl2_A 270 ARVG---RIDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMYPGRA--SASPSLDVLITLLSL---GSNGYKKLLKE 340 (501)
T ss_dssp HHHS---CCCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTSCSCB--CSHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhcC---CCcEEEecccccceee-cCceEEEeCCHHHHHHHHHhCCCCC--CCcHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 2221 1458999999998544 22234433 5667777644321111 234444344555554 46777888888
Q ss_pred HHHHHHHHHHHhccCC---Cceee-cCCceEEEEEecCC
Q 014172 364 FRERRDFLVKSFGELE---GVKMS-EPQGAFYLFIDFST 398 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~---g~~~~-~p~~~~~~~~~l~~ 398 (429)
..++.+++.+.|+++. |-++. .|...+-+-+.+..
T Consensus 341 ~~ela~~L~~~L~~la~~~ge~ll~~~~n~is~a~tl~~ 379 (501)
T 3hl2_A 341 RKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKT 379 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCBCCCTTCSSEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhcChhhcCCCCCceeEEEeccc
Confidence 8888899999888852 33443 23344555566653
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=139.33 Aligned_cols=238 Identities=17% Similarity=0.141 Sum_probs=158.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCC----CCEEEEcCCCCCChHHHHHHcCCEEEEecC
Q 014172 133 GTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP----GDEVIIPAPFWVSYPEMARIADATPVILPT 208 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~----gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 208 (429)
+...+.+.+..++.+..|++ .....++++|+|.+..+++.+.+++ ++.|+++.-+|.+...++.++|++++.++.
T Consensus 95 ~~~~~e~~~~~~~~~~lGlp-~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~ 173 (450)
T 3bc8_A 95 LLNKITNSLVLNVIKLAGVH-SVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIEN 173 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCT-TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCCC-CCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEe
Confidence 34567778888888888864 2345688888885555555555443 899999999999999999999999999976
Q ss_pred CC-CCCCCCCHHHHHhhccc---CCcEEEEcCCC-CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc-cCCCCCC
Q 014172 209 RI-SENFLLDPKVLESKLTE---KSRLLILCSPS-NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHT 282 (429)
Q Consensus 209 ~~-~~~~~~d~e~l~~~l~~---~~~~i~l~~p~-NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~-~~~~~~~ 282 (429)
.+ ++.+.+|++.|+++|++ +.+++++.+|+ +.+|.+-+ +++|+++|++| |+++++|+||+... +....+.
T Consensus 174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~-gi~l~VD~A~G~~~~~~~~l~~ 249 (450)
T 3bc8_A 174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQ 249 (450)
T ss_dssp EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHH
T ss_pred eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHC-CCeEEEECCCchhhhhhHhHHH
Confidence 32 23567999999999964 34566666664 45678888 99999999999 99999999998522 1100000
Q ss_pred ccccCCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHH
Q 014172 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMV 361 (429)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~ 361 (429)
..... ..-++++.|.+|++. .-...+++.. +++.++.+..... ......++.......+.. +.+.+.+..
T Consensus 250 ~a~~~---~~AD~~v~S~HK~l~-a~~~~~~l~~rd~~~~~~~~~~~~--g~~s~SpsL~l~~~l~~~---G~~g~~~~i 320 (450)
T 3bc8_A 250 QGARV---GRIDAFVQSLDKNFM-VPVGGAIIAGFNEPFIQDISKMYP--GRASASPSLDVLITLLSL---GCSGYRKLL 320 (450)
T ss_dssp HHHHH---SCCCEEEEEHHHHHS-CCSSCEEEEESCHHHHHHHHHHSC--SCBCSHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHhcc---cCCCEEEECCccCCC-chhccEEEEecCHHHHHHHHHHhh--cCCcccHHHHHHHHHHHH---HHHHHHHHH
Confidence 11111 123478899999986 3344566665 5666666544321 112234444444444443 355566666
Q ss_pred HHHHHHHHHHHHHhccCC---Cceee
Q 014172 362 KAFRERRDFLVKSFGELE---GVKMS 384 (429)
Q Consensus 362 ~~~~~~r~~l~~~L~~l~---g~~~~ 384 (429)
++..+..+++.+.+++++ |..+.
T Consensus 321 ~~~~~~a~~l~~~l~~~~~~~g~~~l 346 (450)
T 3bc8_A 321 KERKEMFVYLSTQLKKLAEAHNERLL 346 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHHHHHhhHHhcCceec
Confidence 666667777777777765 66554
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-12 Score=129.73 Aligned_cols=318 Identities=13% Similarity=0.088 Sum_probs=186.0
Q ss_pred cCCCeEEcCCCCCC--CCC-hHHHHHHHHHHHHcCCCCCCCCCC-CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGEPD--FDT-PVLIAEAGINAIREGFTRYTPNAG-TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~~~--~~~-p~~v~~a~~~~~~~~~~~Y~~~~G-~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+.+||+..|... ++- +|++.+++.+.+.+.. .|+...+ ..+....+|+.|.+..+. +.+.|++++++++++
T Consensus 65 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~-~~~~~~~~~~~~~~~lAe~L~~~~p~--~~~~v~f~~sGsEA~ 141 (473)
T 4e3q_A 65 NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSPF--DSGRVFYTNSGSEAN 141 (473)
T ss_dssp TCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCC-CCCCCTTEEEHHHHHHHHHHHHHSSC--SSCEEEEESSHHHHH
T ss_pred CCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcc-cccccccccCHHHHHHHHHHHhhCCC--CccEEEEeCchHHHH
Confidence 57889999888643 333 7899999999887632 2322222 235555677777665442 346899999999999
Q ss_pred HHHHHHhc-------CCC-CEEEEcCCCCCChHHHHH-HcCC-----------EEEEecCCCC---CCCCCC--------
Q 014172 169 LQAVLAVC-------SPG-DEVIIPAPFWVSYPEMAR-IADA-----------TPVILPTRIS---ENFLLD-------- 217 (429)
Q Consensus 169 ~~~l~~l~-------~~g-d~Vlv~~p~y~~~~~~~~-~~g~-----------~~~~v~~~~~---~~~~~d-------- 217 (429)
+.+++... .++ ..|+...-+|.+....+. ..|- ..+.++.... ....-.
T Consensus 142 e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 221 (473)
T 4e3q_A 142 DTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARL 221 (473)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHH
Confidence 99988742 233 578888888887543332 2221 1222322100 000011
Q ss_pred HHHHHhhcc----cCCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 218 PKVLESKLT----EKSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 218 ~e~l~~~l~----~~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
.+++++.+. +++.+|++...+.-.|.+ .+++.+++|.++|++| |+++|.||+..+|...|... ....+.-..|
T Consensus 222 ~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~-gilLI~DEV~tGfGRtG~~f-a~e~~gv~PD 299 (473)
T 4e3q_A 222 ARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKY-DIPVISDEVICGFGRTGNTW-GCVTYDFTPD 299 (473)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCCEEEECTTTSSSTTSSSC-HHHHTTCCCS
T ss_pred HHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhccc-ceEEeccCccccCCcccchh-HHHhcCCCCC
Confidence 233444442 234455554445556755 4567899999999999 99999999999874433211 1111211112
Q ss_pred ceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHh-------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ-------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAF 364 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~-------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~ 364 (429)
+-+++|.++ .| ..+|.+++.+++.+.+.... ...+++.++++.+++.+.|+. .++ +++.+..
T Consensus 300 ----i~t~~K~l~-gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~---i~~--~~l~~~~ 369 (473)
T 4e3q_A 300 ----AIISSKNLT-AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDV---VMN--EGLAENV 369 (473)
T ss_dssp ----EEEECGGGG-TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHH---HHH--SSHHHHH
T ss_pred ----hHHhccccc-CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhh---hcc--ccHHHHH
Confidence 446899998 66 89999999999998876432 234566788888888888874 111 1233333
Q ss_pred HHHHHHHHHHhcc---CCCceeecCCceEEEEEecCCccCCcccCC-CCCCChHHHHHHHHHhCCeec
Q 014172 365 RERRDFLVKSFGE---LEGVKMSEPQGAFYLFIDFSTYYGSEAEGF-GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 365 ~~~r~~l~~~L~~---l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.-+++.+.|++ .+.+.-++..|-| +-+++-...... ..+ ....-...+++.++++ ||.+
T Consensus 370 ~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~-~gielv~~~~~~-~~~~~~~~~~~~~~~~~~~~-Gll~ 434 (473)
T 4e3q_A 370 RRLAPRFEERLKHIAERPNIGEYRGIGFM-WALEAVKDKASK-TPFDGNLSVSERIANTCTDL-GLIC 434 (473)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEEEEETTE-EEEEECSBTTTT-BCCCGGGCHHHHHHHHHHHT-TEEC
T ss_pred HHHHHHHHHHHHHHhcCCCeeEEeecceE-EEEEEecCcccc-ccccccHHHHHHHHHHHHHC-CcEE
Confidence 3444445554444 3455444445544 445542210000 000 0001246788888876 8764
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-12 Score=130.87 Aligned_cols=248 Identities=14% Similarity=0.101 Sum_probs=159.0
Q ss_pred hcCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCC-CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 92 QAGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAG-TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 92 ~~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G-~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
..|+..||+..|. ..++- +|++.+++.+++.+..+ ....+ ..+....+++.+.+.... -..+.++++++++++
T Consensus 61 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~--~~~~~~~~~~~~~lae~L~~~~p~-~~~~~v~f~~sGsEA 137 (456)
T 4atq_A 61 VDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTH--TCFMVTPYEGYVAVTEQLNRLTPG-DHAKRTVLFNSGAEA 137 (456)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSC--CTTTTSCCHHHHHHHHHHHHHSSC-SSCEEEEEESSHHHH
T ss_pred CCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccC--cccCccCcHHHHHHHHHHHHhCCC-CCCcEEEEeCChHHH
Confidence 3678899998874 44554 78999999998876321 11111 123444566666554321 123579999999999
Q ss_pred HHHHHHHhcC--CCCEEEEcCCCCCChHHHHHH-cC-------------CEEEEecCCC----CCCCCCCHHHHHhh---
Q 014172 168 ILQAVLAVCS--PGDEVIIPAPFWVSYPEMARI-AD-------------ATPVILPTRI----SENFLLDPKVLESK--- 224 (429)
Q Consensus 168 l~~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~g-------------~~~~~v~~~~----~~~~~~d~e~l~~~--- 224 (429)
++.+++.... ....|+...-+|.+....+.. .+ ..+..+|... .....-+.+.+++.
T Consensus 138 ~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 217 (456)
T 4atq_A 138 VENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITM 217 (456)
T ss_dssp HHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHH
Confidence 9999887532 337888888888876543322 11 1344454321 01111123333332
Q ss_pred ----ccc-CCcEEEEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEe
Q 014172 225 ----LTE-KSRLLILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (429)
Q Consensus 225 ----l~~-~~~~i~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (429)
+.+ ++.+|++...+.-.|.+ .+++.+++|.++|++| |+++|.||++.++...|.. .....+.-..| +-
T Consensus 218 ~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~-gillI~DEV~tG~GRtG~~-~a~e~~gv~PD----iv 291 (456)
T 4atq_A 218 IEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEK-GIVFIADEVQSGFCRTGEW-FAVDHEGVVPD----II 291 (456)
T ss_dssp HHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGTTCCCS----EE
T ss_pred HHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhc-CCceEecccccccCCcccc-ccccccCCCCc----hh
Confidence 222 45555554445556754 5677899999999999 9999999999986444421 12222221122 45
Q ss_pred ccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhc
Q 014172 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 299 S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
+++|.+| .|..+|.+++.+++.+.+.......+++.++++.+++.+.|+.
T Consensus 292 t~gK~lg-gg~P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~~ 341 (456)
T 4atq_A 292 TMAKGIA-GGLPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDT 341 (456)
T ss_dssp EECGGGG-TTSSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHHH
T ss_pred hhhhccc-CcCCceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHHH
Confidence 6899998 8999999999999988876655566777899999999988874
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7e-13 Score=142.09 Aligned_cols=317 Identities=13% Similarity=0.068 Sum_probs=184.2
Q ss_pred CeEEcCCCC--CCCCC--hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGE--PDFDT--PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~--~~~~~--p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
.+||+..|. ..++. +|++.+++.+++.+-.+ +.......+....+++.|.+..+.. ..+.|+++++++++++.+
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h-~~~~~~~~~~~~~Lae~L~~~~p~~-~l~~vff~~SGSeA~E~A 458 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFGH-VMFPENVYEPALKCAELLLDGVGKG-WASRVYFSDNGSTAIEIA 458 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSS-CCCTTEECHHHHHHHHHHHHTTTTT-TCCEEEEESSHHHHHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhccc-ccccccCCHHHHHHHHHHHHhCCCC-CCCEEEECCChhHHHHHH
Confidence 578887763 33443 68999999988865211 1111122345556777776654411 136899999999999988
Q ss_pred HHHhc-----CCC------------CEEEEcCCCCCChH-HHHHHcCCE---------------E-------------EE
Q 014172 172 VLAVC-----SPG------------DEVIIPAPFWVSYP-EMARIADAT---------------P-------------VI 205 (429)
Q Consensus 172 l~~l~-----~~g------------d~Vlv~~p~y~~~~-~~~~~~g~~---------------~-------------~~ 205 (429)
++... ..| .+||..+-+|.+-. ..+...|.. + ..
T Consensus 459 lK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 538 (831)
T 4a0g_A 459 LKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWN 538 (831)
T ss_dssp HHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEE
T ss_pred HHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceE
Confidence 88762 222 36888888777543 444443321 0 01
Q ss_pred ecCCCC------C--CCCCC------------------HHHHHhhcc--------cCCcEEEEcCC-CCCccCCC-CHHH
Q 014172 206 LPTRIS------E--NFLLD------------------PKVLESKLT--------EKSRLLILCSP-SNPTGSVY-PKNL 249 (429)
Q Consensus 206 v~~~~~------~--~~~~d------------------~e~l~~~l~--------~~~~~i~l~~p-~NPtG~~~-~~~~ 249 (429)
++.... + .+. + .+.|++.+. +++.+|++... ++..|... +++.
T Consensus 539 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~ 617 (831)
T 4a0g_A 539 ISLPESFSEIAPEYGTFT-SRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLF 617 (831)
T ss_dssp EECCTTSCCCCSSTTEES-CHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHH
T ss_pred ecCCcccccccccccccc-chhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHH
Confidence 111100 0 000 1 256777764 23455555543 67777655 7888
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHh
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQ 328 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~ 328 (429)
+++|.++|++| |+++|.||++.+|...|... ....+.-..+ +.+|+|.++ .| +++|++++++++++.+....
T Consensus 618 L~~l~~lc~~~-gilLI~DEV~tGfGRtG~~f-a~e~~gv~PD----iitlsK~L~-gG~~Plgav~~~~~i~~~~~~~~ 690 (831)
T 4a0g_A 618 QRVLVNECRNR-KIPVIFDEVFTGFWRLGVET-TTELLGCKPD----IACFAKLLT-GGMVPLAVTLATDAVFDSFSGDS 690 (831)
T ss_dssp HHHHHHHHHHT-TCCEEEECTTTTTTTTSBSS-THHHHSSCCS----EEEECGGGG-TTSSCCEEEEECHHHHHTTCSSC
T ss_pred HHHHHHHHHHc-CCeEEEEcCccccccCCCch-hhHhcCCCCc----EEEEecccc-cCccCcEEEEECHHHHHHHhccc
Confidence 99999999999 99999999999875555322 1212211112 347999998 67 89999999999998875421
Q ss_pred ------hcccCCCchHHHHHHHHHHhcCCCChHHHHHH---HHHHHH-HHHHHHHHhccCCCceeecCCceEEEEEecCC
Q 014172 329 ------SQFTSGASSISQKAGVAALGLGYAGGEVVSKM---VKAFRE-RRDFLVKSFGELEGVKMSEPQGAFYLFIDFST 398 (429)
Q Consensus 329 ------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~---~~~~~~-~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~ 398 (429)
...+++.++++++++.++|+.-. .++..++. .+.+++ .++.+.+.+.+.+.+..++..|.| +.+.+..
T Consensus 691 ~~~~~~hg~T~~g~Pla~Aaala~L~~i~-~~~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~-~~iel~~ 768 (831)
T 4a0g_A 691 KLKALLHGHSYSAHAMGCATAAKAIQWFK-DPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTL-FALELKA 768 (831)
T ss_dssp GGGSCCCCCTTTTCHHHHHHHHHHHHHHH-CTTTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEEEETTE-EEEEEC-
T ss_pred ccccceeecCCcccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEeecccE-EEEEEec
Confidence 23456678899988888886410 01111111 111111 012344555566666666666665 5555532
Q ss_pred ccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 399 YYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
... ..++ ......+++++|+++ ||.+
T Consensus 769 ~~~--~~~~-~~~~a~~~~~~l~e~-Gv~v 794 (831)
T 4a0g_A 769 DAS--NSGY-ASLYAKSLLIMLRED-GIFT 794 (831)
T ss_dssp -----------CHHHHHHHHHHHHT-TEEC
T ss_pred Ccc--cccc-chHHHHHHHHHHHHC-CcEE
Confidence 100 0000 001256788888876 8876
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.90 E-value=4.5 Score=36.83 Aligned_cols=97 Identities=8% Similarity=0.029 Sum_probs=60.1
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------
Q 014172 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------ 227 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------ 227 (429)
+..-++||.|++..-..+...|.+.|..|++..-.-......++..|.+...+..+- -|.+++++.++.
T Consensus 28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv-----~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADS-----ANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCT-----TCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecC-----CCHHHHHHHHHHHHHHcC
Confidence 445567777766655666777889998888776443334455666777777776643 256666665542
Q ss_pred CCcEEEEcCC-CCCccC--CCCHHHHHHHHHH
Q 014172 228 KSRLLILCSP-SNPTGS--VYPKNLLDEIARI 256 (429)
Q Consensus 228 ~~~~i~l~~p-~NPtG~--~~~~~~l~~I~~~ 256 (429)
+... +++|. .++.+. -++.++|+++.++
T Consensus 103 ~iDi-LVNNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 103 RIDV-LFVNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp CEEE-EEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred CCCE-EEECCCCCCCCChhhccHHHHHHHHHH
Confidence 3333 44444 333332 3577889888876
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 429 | ||||
| d1j32a_ | 388 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pho | 1e-96 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 9e-94 | |
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-82 | |
| d1xi9a_ | 395 | c.67.1.1 (A:) Putative alanine aminotransferase {P | 9e-64 | |
| d2hoxa1 | 425 | c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativ | 3e-58 | |
| d1o4sa_ | 375 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 1e-57 | |
| d1w7la_ | 418 | c.67.1.1 (A:) Kynurenine--oxoglutarate transaminas | 1e-52 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 6e-46 | |
| d2r5ea1 | 418 | c.67.1.1 (A:12-429) Kynurenine--oxoglutarate trans | 4e-45 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 2e-44 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 8e-43 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 3e-41 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 6e-41 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 2e-39 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 5e-38 | |
| d2gb3a1 | 389 | c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotog | 3e-37 | |
| d1u08a_ | 382 | c.67.1.1 (A:) Putative methionine aminotransferase | 5e-36 | |
| d1v2da_ | 368 | c.67.1.1 (A:) Glutamine aminotransferase {Thermus | 1e-35 | |
| d1wsta1 | 403 | c.67.1.1 (A:13-415) Multiple substrate aminotransf | 2e-34 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-34 | |
| d1c7na_ | 394 | c.67.1.3 (A:) Cystalysin {Treponema denticola [Tax | 5e-32 | |
| d1bw0a_ | 412 | c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Try | 1e-31 | |
| d1d2fa_ | 361 | c.67.1.3 (A:) Modulator in mal gene expression, Ma | 3e-29 | |
| d1vp4a_ | 420 | c.67.1.1 (A:) Putative aminotransferase TM1131 {Th | 3e-24 | |
| d2aeua1 | 366 | c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Ar | 2e-20 | |
| d2f8ja1 | 334 | c.67.1.1 (A:1-334) Histidinol-phosphate aminotrans | 3e-19 | |
| d1lc5a_ | 355 | c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxyl | 3e-14 | |
| d1fg7a_ | 354 | c.67.1.1 (A:) Histidinol-phosphate aminotransferas | 1e-13 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 3e-09 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 7e-06 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Score = 293 bits (750), Expect = 1e-96
Identities = 156/362 (43%), Positives = 217/362 (59%), Gaps = 15/362 (4%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L+ RV +V PS T+ I +A A+ G+ V +AGEPDF+TP I EA A+ +G TR
Sbjct: 3 LAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTR 62
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR AI KL+ +NGL Y D ILV+NG KQSI +LA+ PGDEVIIPAP
Sbjct: 63 YGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAP 122
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
FWVSYPEM ++A+ TPVILPT + F + P+ + +T K++LL+ +PSNPTG VY
Sbjct: 123 FWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGMVYTP 182
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNGFSKAFAM 306
+ + IA++ + L VLSDEIYE I+Y A H S + P +ER++ +GF+K +AM
Sbjct: 183 DEVRAIAQVAVEAG-LWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+G++AGP V A KIQ TS + +Q +AA + V +M+ AF E
Sbjct: 242 TGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ---DCVQEMLAAFAE 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RR +++ + + G++ +P GAFY+F + +S C LLD+ QV
Sbjct: 299 RRRYMLDALNAMPGLECPKPDGAFYMFPSIA----------KTGRSSLDFCSELLDQHQV 348
Query: 427 LL 428
Sbjct: 349 AT 350
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 285 bits (730), Expect = 9e-94
Identities = 145/339 (42%), Positives = 204/339 (60%), Gaps = 5/339 (1%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
LS RV A+KPS TVA+ +A L + GV ++ L AGEPDFDTP + EA A+ +G T
Sbjct: 3 GLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKT 62
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186
+Y P AG ELR A+ K + ENGLS TP++ +V+ G Q++ A+ PGDEVI+ +
Sbjct: 63 KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLS 122
Query: 187 PFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
P+WVSYPEM R A V + T E F+ DP+ + +T +++ L++ SP+NPTG+VYP
Sbjct: 123 PYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPNNPTGAVYP 182
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
K +L+ +AR+ +H ++SDEIYEH++Y + P E TLTVNG +KAFAM
Sbjct: 183 KEVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGRVAP---EHTLTVNGAAKAFAM 238
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TGWR+GY GPK + A + Q T+ +I+Q A + AL A V +A+R
Sbjct: 239 TGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRR 298
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAE 405
RRD L++ L G+K P GAFY+ +D S E
Sbjct: 299 RRDLLLEGLTAL-GLKAVRPSGAFYVLMDTSPIAPDEVR 336
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 256 bits (654), Expect = 2e-82
Identities = 145/363 (39%), Positives = 197/363 (54%), Gaps = 18/363 (4%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFT 126
+LS R+ V S+ + D +A VI L GEPDFDTP I E A+ +G T
Sbjct: 1 ALSDRLELVSASEIRKLFD----IAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLT 56
Query: 127 RYTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIP 185
Y PN G LELR AI KLK++NG+ P +I+V GA Q+ L + A G+EV+IP
Sbjct: 57 HYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIP 116
Query: 186 APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245
P +VSY +A PV +PT + F L+ L+ +T+K+R LI+ SP NPTG+V
Sbjct: 117 TPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPTGAVL 176
Query: 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA 305
K L+EIA V +H L+V+SDE+YEH IY A H S ASL GM+ERT+TVNGFSK FA
Sbjct: 177 TKKDLEEIADFVVEHD-LIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFA 235
Query: 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365
MTGWRLG++A P + K Q + + Q A AL + V +M K +
Sbjct: 236 MTGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALK-DERSWKAVEEMRKEYD 294
Query: 366 ERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQ 425
RR + K E G+ +P+GAFY+F S+ +L +A+
Sbjct: 295 RRRKLVWKRLNE-MGLPTVKPKGAFYIFPRIR----------DTGLTSKKFSELMLKEAR 343
Query: 426 VLL 428
V +
Sbjct: 344 VAV 346
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} Length = 395 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Score = 208 bits (529), Expect = 9e-64
Identities = 97/371 (26%), Positives = 169/371 (45%), Gaps = 24/371 (6%)
Query: 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIR 122
+ S R +V + A L + G+ VIRL G+P DF P + EA AI+
Sbjct: 2 IRASKRALSV-EYAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIK 60
Query: 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
EG Y + G ELR AI + K +NG+ TPD + V+ +++ A+ PGDE+
Sbjct: 61 EGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEI 120
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242
++P P + Y + + PV T E++ D + K+T++++ + + +P+NPTG
Sbjct: 121 LVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTG 180
Query: 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302
++Y K L+EI I ++ + + + + +NG SK
Sbjct: 181 ALYDKKTLEEILNIAGEYE---IPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSK 237
Query: 303 AFAMTGWRL--GYIAGPKHFVAA---CNKIQSQFTSGASSISQKAGVAALGLGYAGGEVV 357
+ TGWRL Y P++ ++ ++ ++ +Q A +A L + +
Sbjct: 238 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT---GPMDYL 294
Query: 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLC 417
+ +K +ERRD++ K E+ G+ ++PQGAFY+F G +N +
Sbjct: 295 KEYMKKLKERRDYIYKRLNEIPGISTTKPQGAFYIFPKIE---------VGPWKNDKEFV 345
Query: 418 RYLLDKAQVLL 428
+L A VL
Sbjct: 346 LDVLHNAHVLF 356
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} Length = 425 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Score = 194 bits (495), Expect = 3e-58
Identities = 49/358 (13%), Positives = 105/358 (29%), Gaps = 52/358 (14%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIRE-GFTR--YTPNAGTL----ELRSAICHKLKEE 148
+A+G+ F +A+ + R Y N + EL I +
Sbjct: 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV 116
Query: 149 NGLSYTPDQILVSNGAKQSILQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIAD 200
+ I+ G Q I V+++ +P +V+ APF+ + E + D
Sbjct: 117 GNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFD 176
Query: 201 ATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH 260
+ + + + + ++ SP+NP G +
Sbjct: 177 KKGY--------VWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHA------------- 215
Query: 261 PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY-IAGPKH 319
++ IY+ + Y P + + + + + SK +G R G+ + +
Sbjct: 216 --VIKGCKSIYDMVYYWP----HYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269
Query: 320 FVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG--------EVVSKMVKAFRERRDFL 371
++ T G +Q + L A ++ + K RER +
Sbjct: 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329
Query: 372 VKSFGELEGVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+ + E PQ + + + C ++
Sbjct: 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINT 387
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} Length = 375 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Score = 191 bits (486), Expect = 1e-57
Identities = 122/361 (33%), Positives = 198/361 (54%), Gaps = 22/361 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
+S R++ + SKT+ + +A AL + G VI L AGEPDF TP + E + +++G +
Sbjct: 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVK 60
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
YT G ELR I ++ E +PDQ++V+NGAKQ++ A +A+ PGDEVI+ +P
Sbjct: 61 YTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSP 120
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
WVSY +A T ++ T +S+NF + +E L K++ +++ SP+NPTG VY +
Sbjct: 121 VWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRR 180
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
L+ + R+ K + + + TS + ++R + +NGFSK+ +MT
Sbjct: 181 EFLEGLVRLAKKRN--FYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMT 238
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
GWR+GY+ + A +KIQS TS ++++Q A + AL + S MV+ F+ER
Sbjct: 239 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDN------SYMVQTFKER 292
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427
++F+V+ ++ GVK EP+GAFYLF + C LL++ +V
Sbjct: 293 KNFVVERLKKM-GVKFVEPEGAFYLFFKVR-------------GDDVKFCERLLEEKKVA 338
Query: 428 L 428
L
Sbjct: 339 L 339
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Score = 179 bits (454), Expect = 1e-52
Identities = 99/379 (26%), Positives = 166/379 (43%), Gaps = 24/379 (6%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGF-- 125
+ R++ + + V LA + V+ L G PDF P EA +A+ F
Sbjct: 3 QARRLDGIDYNPWVEFV----KLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFML 57
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVII 184
+YT G L + E G P + +LV+ G ++ A A+ GDEVII
Sbjct: 58 NQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVII 117
Query: 185 PAPFWVSYPEMARIADATPVILPTR----------ISENFLLDPKVLESKLTEKSRLLIL 234
PF+ Y M +A PV + + S N+ LDP L K T +++ L+L
Sbjct: 118 IEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRTKALVL 177
Query: 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294
+P+NP G V+ + L+ +A + +H ++ ++DE+Y+ ++Y H S ASLPGMWERT
Sbjct: 178 NTPNNPLGKVFSREELELVASLCQQHD-VVCITDEVYQWMVYDGHQHISIASLPGMWERT 236
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGG 354
LT+ K F+ TGW++G++ GP H + + + SQ A +
Sbjct: 237 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLF 296
Query: 355 EVVSKMVKAFRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIE 411
S F + G+K PQG+++L D S + + G ++
Sbjct: 297 RQPSSYFVQFPQAMQRCRDHMIRSLQSVGLKPLIPQGSYFLITDISDFKRKMPDLPGAVD 356
Query: 412 --NSESLCRYLLDKAQVLL 428
++++ ++
Sbjct: 357 EPYDRRFVKWMIKNKGLVA 375
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 161 bits (407), Expect = 6e-46
Identities = 66/356 (18%), Positives = 110/356 (30%), Gaps = 39/356 (10%)
Query: 98 IRLAAG---EPDFDTPVLI----AEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENG 150
+ L+ G D P L AEA +NA G + Y P G R AI L +
Sbjct: 29 VNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADH 88
Query: 151 LSYTPDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARIADATPVIL 206
++ S V A P V + P W ++ + A
Sbjct: 89 PVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTY 148
Query: 207 PTRISENFLLDPKVLES---KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRL 263
P + L + L +S +L+ NPTG+ + D + I K L
Sbjct: 149 PWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEI-LKAREL 207
Query: 264 LVLSDEIYEHIIYAPATH-TSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
+ D Y+ + ++ L N FSK F++ G R+G ++
Sbjct: 208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCEDAE 267
Query: 323 ACNKIQSQF-------TSGASSISQKAGVAALGLGYAGGEVVS---KMVKAFRERRDFLV 372
A ++ Q S + + A L ++ +M R LV
Sbjct: 268 AAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELV 327
Query: 373 KSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+ + P+ F ++ F S + L ++ V L
Sbjct: 328 ------KVLSTEMPERNFDYLLNQRGM-------FSYTGLSAAQVDRLREEFGVYL 370
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} Length = 418 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Score = 159 bits (403), Expect = 4e-45
Identities = 88/377 (23%), Positives = 155/377 (41%), Gaps = 22/377 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG--- 124
L R S V LA A + L G PD+ P A A
Sbjct: 4 LPKRYQGSTKSVWVEYI----QLA-AQYKPLNLGQGFPDYHAPKYALNALAAAANSPDPL 58
Query: 125 FTRYTPNAGTLELRSAICHKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVI 183
+YT G L A+ + + P ++LV+ GA +++ + GDEVI
Sbjct: 59 ANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVI 118
Query: 184 IPAPFWVSYPEMARIADATPVILPTRISEN--------FLLDPKVLESKLTEKSRLLILC 235
I PF+ Y M + A P +P + ++ ++LD LE+ EK++++I+
Sbjct: 119 IIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIIN 178
Query: 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL 295
+P NP G V + L+ +A + K +L +SDE+YEH+++ P H +LPGMWERT+
Sbjct: 179 TPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTI 237
Query: 296 TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGE 355
T+ K F++TGW++G+ GP+ + + ++ Q+A +
Sbjct: 238 TIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK 297
Query: 356 VVSKMVKAFRERRD---FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EAEGFGKIE 411
+ + SF G+ + PQG +++ D+S+ +
Sbjct: 298 SPECYFNSISGELMAKRDYMASFLAEVGMNPTVPQGGYFMVADWSSLDSKVDLTQETDAR 357
Query: 412 NSESLCRYLLDKAQVLL 428
+++ +
Sbjct: 358 KDYRFTKWMTKSVGLQG 374
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 157 bits (398), Expect = 2e-44
Identities = 53/394 (13%), Positives = 94/394 (23%), Gaps = 48/394 (12%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVLI----AEAGIN 119
S+ V +P + + L G D VL E I
Sbjct: 4 SVFAEVPQAQPVLVFKLIADFREDPDPRK--VNLGVGAYRTDDCQPWVLPVVRKVEQRIA 61
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSY---------TPDQILVSNGAKQSILQ 170
Y P G E R+ ++ + + + + +
Sbjct: 62 NNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR 121
Query: 171 AVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKV----LESKLT 226
+ V + +P W ++ + A +
Sbjct: 122 WYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181
Query: 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA- 285
E S ++ NPTG+ +IA + K L D Y+ ++A
Sbjct: 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASV-MKRRFLFPFFDSAYQGFASGNLEKDAWAI 240
Query: 286 -SLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI------ 338
FSK F + R+G + + ++ SQ
Sbjct: 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPA 300
Query: 339 -SQKAGVAALGLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFI 394
+ L E V M R L L + G +
Sbjct: 301 QGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL------KTPGTWNHIT 354
Query: 395 DFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
D F + YL+++ + L
Sbjct: 355 DQIGM-------FSFTGLNPKQVEYLINQKHIYL 381
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 152 bits (385), Expect = 8e-43
Identities = 53/385 (13%), Positives = 100/385 (25%), Gaps = 46/385 (11%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVL--IAEAGINAIREGF 125
+ A + + D A + G I L G + TPVL + +A +
Sbjct: 4 NITAAPADPILGLADLFRADERPGK--INLGIGVYKDETGKTPVLTSVKKAEQYLLENET 61
Query: 126 TR-YTPNAGTLELRSAICHKLKEENGLSYTPDQ----ILVSNGAKQSILQAVLAVCSPGD 180
T+ Y G E L + + + LA +
Sbjct: 62 TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVK 121
Query: 181 EVIIPAPFWVSYPEMARIADATPVILPTRISENFLL---DPKVLESKLTEKSRLLILCSP 237
V + P W ++ + A +EN L ++ +L
Sbjct: 122 RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCC 181
Query: 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA-SLPGMWERTLT 296
NPTG +A++ + L L D Y+ + M + +
Sbjct: 182 HNPTGIDPTLEQWQTLAQL-SVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIV 240
Query: 297 VNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS-------GASSISQKAGVAALGL 349
+ +SK F + R+G ++ SQ + + L
Sbjct: 241 ASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN 300
Query: 350 GYAGGEV---VSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSE 403
++ M + + R V + E Q + F
Sbjct: 301 DALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGL------- 353
Query: 404 AEGFGKIENSESLCRYLLDKAQVLL 428
++ L ++ V
Sbjct: 354 ---------TKEQVLRLREEFGVYA 369
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 149 bits (376), Expect = 3e-41
Identities = 57/398 (14%), Positives = 98/398 (24%), Gaps = 55/398 (13%)
Query: 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVLI----AEAGIN 119
+L + + P I + +A + L G + + VL AE I+
Sbjct: 3 TLFNNIELLPPDALFGIKQRYGQDQRATK--VDLGIGAYRDDNGKPWVLPSVKAAEKLIH 60
Query: 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQS----ILQAVLAV 175
Y G L S + + D+++ + I +
Sbjct: 61 NDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK 120
Query: 176 CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES---KLTEKSRLL 232
P V + P W ++ + P +E LD + K E S +
Sbjct: 121 FFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFV 180
Query: 233 ILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY-----APATHTSFASL 287
+ NPTG +I + L D Y+
Sbjct: 181 LHSCAHNPTGLDPTSEQWVQIVDA-IASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239
Query: 288 PGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAAL 347
F+K M G R+G A I+ TS + I +
Sbjct: 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPP 299
Query: 348 GLG--------------YAGGEVVSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAF 390
G + + M + R L +L Q
Sbjct: 300 AYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGM 359
Query: 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+ F + + + L + V L
Sbjct: 360 FSFTGL----------------TPQMVKRLEETHAVYL 381
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 148 bits (373), Expect = 6e-41
Identities = 58/387 (14%), Positives = 106/387 (27%), Gaps = 48/387 (12%)
Query: 71 RVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPDFDTPVL--IAEAGINAIREGF 125
V P + +T+ + + L G + + VL + +A +
Sbjct: 6 HVEMGPPDPILGVTEAFKRDTNSKK--MNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM 63
Query: 126 TR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-----SPG 179
+ Y P AG + A EN ++ + + G + V A
Sbjct: 64 DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFS 123
Query: 180 DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL---TEKSRLLILCS 236
+V +P P W ++ + R A + LD + EKS +L+
Sbjct: 124 RDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHAC 183
Query: 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFA--SLPGMWERT 294
NPTG + E+A + K LL D Y+ ++A
Sbjct: 184 AHNPTGVDPRQEQWKELASV-VKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDV 242
Query: 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI-------SQKAGVAAL 347
+ ++K + G R G +++SQ + + L
Sbjct: 243 VLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLIL 302
Query: 348 GLGYAGGEV---VSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYG 401
E V M R LV + + + Q + F
Sbjct: 303 NTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGL----- 357
Query: 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428
L + + +
Sbjct: 358 -----------KPEQVERLTKEFSIYM 373
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 144 bits (363), Expect = 2e-39
Identities = 46/360 (12%), Positives = 114/360 (31%), Gaps = 35/360 (9%)
Query: 97 VIRLAAGEPDFDTPVL-----------IAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
+I++ E +L + +I + G + A+ +
Sbjct: 38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFM 97
Query: 146 KE--ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
E N +++ P+ ++++ GA + + + PG+ V+IP P++ + +
Sbjct: 98 AEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVE 157
Query: 204 VILPTRISENFLLDPKVLESKLTEKSRLL------ILCSPSNPTGSVYPKNLLDEIARIV 257
++ S N + + +++ +L + + +
Sbjct: 158 IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSF 217
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASLP---------GMWERTLTVNGFSKAFAMTG 308
+ + ++SDEIY ++ + S + +W+R V SK + G
Sbjct: 218 VEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG 277
Query: 309 WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368
+R+G I V A S F +S + + + ++
Sbjct: 278 FRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQK 337
Query: 369 DFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
S + G+ + ++D S E L + ++ + + +
Sbjct: 338 KL--VSGLQKSGISCLNGNAGLFCWVDMRHLLRSNT-----FEAEMELWKKIVYEVHLNI 390
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 140 bits (353), Expect = 5e-38
Identities = 60/358 (16%), Positives = 125/358 (34%), Gaps = 34/358 (9%)
Query: 97 VIRLAAGEP--DFDT---------PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145
VI++ E D I GI + + + G E R AI +
Sbjct: 38 VIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKA-IANFQDYHGLPEFRKAIAKFM 96
Query: 146 KEENG--LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATP 203
++ G + + P++++++ GA + + + PGD ++P+P++ ++ R
Sbjct: 97 EKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQ 156
Query: 204 VIL-------PTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARI 256
+I +I+ + + K K + LIL +PSNP G+ K+ L +
Sbjct: 157 LIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSF 216
Query: 257 VAKHPRLLVLSDEIYEHIIYAPATHTSFASLP------GMWERTLTVNGFSKAFAMTGWR 310
+H LV + + P + L + V SK + G+R
Sbjct: 217 TNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFR 276
Query: 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDF 370
+G I V C + S F ++ + + +R
Sbjct: 277 VGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAML--SDEKFVDNFLRESAMRLGKRHK 334
Query: 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+ E+ G+K + + ++D ++ SL R +++ ++ +
Sbjct: 335 HFTNGLEVVGIKCLKNNAGLFCWMDLRPLLREST-----FDSEMSLWRVIINDVKLNV 387
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} Length = 389 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Score = 138 bits (346), Expect = 3e-37
Identities = 87/362 (24%), Positives = 162/362 (44%), Gaps = 21/362 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
S RV + S + A + GV + L G+PD TP + E I +
Sbjct: 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFER-IYENKPEVVY 59
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y+ +AG ELR A K + P+ +LV+NG ++IL + + +PGDE+++ P
Sbjct: 60 YSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEP 119
Query: 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247
F+ +Y A+IA + + R+ E F P+ LES + E+++ ++L +P NPTG VY K
Sbjct: 120 FYANYNAFAKIAGVKLIPVTRRMEEGF-AIPQNLESFINERTKGIVLSNPCNPTGVVYGK 178
Query: 248 NLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307
+ + + I +H L ++ DE+Y I++ ++ ++ + ++ SK F+
Sbjct: 179 DEMRYLVEIAERHG-LFLIVDEVYSEIVFRGEFASAL---SIESDKVVVIDSVSKKFSAC 234
Query: 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367
G R+G + + + +Q + Q V + + +RER
Sbjct: 235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGL---LNLDDSFFDFVRETYRER 291
Query: 368 RDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427
+ ++K E + ++P GAFY+ + +E++E R++L +
Sbjct: 292 VETVLKKLEEHGLKRFTKPSGAFYITAEL------------PVEDAEEFARWMLTDFNMD 339
Query: 428 LH 429
Sbjct: 340 GE 341
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Score = 134 bits (337), Expect = 5e-36
Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 17/353 (4%)
Query: 77 PSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLE 136
P I Q +ALAQ I L+ G PDFD P + E + + +G +Y P G
Sbjct: 9 PQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQA 67
Query: 137 LRSAICHKLKEENGLSYTPDQ-ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
LR AI K + G D I V+ GA +++ A+ A+ GDEVI P + SY
Sbjct: 68 LREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA 127
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIAR 255
++ V +F +D + + L+E++RL+IL +P + + +
Sbjct: 128 IALSG-GIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTP-HNPSATVWQQADFAALW 185
Query: 256 IVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315
+ V+SDE+YEHI ++ H S + P + ER + V+ F K + MTGW++GY
Sbjct: 186 QAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCV 245
Query: 316 GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375
P +I+ S++ A +A + A E + +R++RD LV +
Sbjct: 246 APAPI---SAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNAL 302
Query: 376 GELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
E +++ +G ++L +D+S + C++L + V
Sbjct: 303 NE-SRLEILPCEGTYFLLVDYSAV---------STLDDVEFCQWLTQEHGVAA 345
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Score = 132 bits (333), Expect = 1e-35
Identities = 100/362 (27%), Positives = 162/362 (44%), Gaps = 35/362 (9%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTR 127
L PR A K S I + + LAQ + + L G P P + EA A+ +
Sbjct: 3 LHPRTEAAKES----IFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGRQ-DQ 56
Query: 128 YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187
Y P AG LR A+ + P+ ++V++GA +++ + ++ PGDEV++ P
Sbjct: 57 YAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEP 110
Query: 188 FWVSYPEMARIADATPVILPT-RISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246
F+ Y A +A A ++ E F LD LE LT ++R L+L +P NPTG V+
Sbjct: 111 FFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFG 170
Query: 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306
+ L+ IAR+ H L ++SDE+Y+ + Y ERT TV K
Sbjct: 171 ERELEAIARLARAH-DLFLISDEVYDELYYGERPRRLR---EFAPERTFTVGSAGKRLEA 226
Query: 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366
TG+R+G+I GPK F+ ++ + A + Q AL L + + +R
Sbjct: 227 TGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR-REGFYEALREGYRR 285
Query: 367 RRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426
RRD L + G+++ P+G ++L + L+++A+V
Sbjct: 286 RRDLLAGGLRAM-GLRVYVPEGTYFLMAEL----------------PGWDAFRLVEEARV 328
Query: 427 LL 428
L
Sbjct: 329 AL 330
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} Length = 403 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Score = 130 bits (326), Expect = 2e-34
Identities = 58/348 (16%), Positives = 140/348 (40%), Gaps = 20/348 (5%)
Query: 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREGF 125
S + +K S+ + VI LA G P +T I + + + E
Sbjct: 7 FSEKAMLMKASEVRELLKLV-----ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHA 61
Query: 126 TR---YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEV 182
+ Y G LR A+ +++ + + +I+ G++Q++ +PGD +
Sbjct: 62 DKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPI 121
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI----LCSPS 238
++ AP +++ + + D + +P + + +L ++ + + + +
Sbjct: 122 VVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQ 181
Query: 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298
NP G + ++ + ++ L++ D Y + Y+ + R + +
Sbjct: 182 NPAGVTMSVDRRKKLLELANEYD-FLIVEDGPYSELRYSGEPTPPIKH-FDDYGRVIYLG 239
Query: 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVS 358
FSK G+R+G++A H + + ++ Q + GY E +
Sbjct: 240 TFSKIL-APGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIP 297
Query: 359 KMVKAFRERRDFLVKSFGE--LEGVKMSEPQGAFYLFIDFSTYYGSEA 404
K+++ ++ RRD ++++ E EGV+ ++P+G ++ + ++
Sbjct: 298 KIIEFYKPRRDAMLEALEEYMPEGVEWTKPEGGMFVRVTLPEGIDTKL 345
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 129 bits (324), Expect = 4e-34
Identities = 50/381 (13%), Positives = 96/381 (25%), Gaps = 42/381 (11%)
Query: 73 NAVKPSKTVAITDQATALAQAGVS-VIRLAAG---EPDFDTPVL--IAEAGINAIREGFT 126
+KP I I L G + TP++ + A + T
Sbjct: 3 GNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETT 62
Query: 127 R-YTPNAGTLELRSAICHKLKEENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVII 184
+ Y +G E + A+ + + S T V + + +P V +
Sbjct: 63 KTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFV 122
Query: 185 PAPFWVSYPEMARIADATPVILPTRISENFLL---DPKVLESKLTEKSRLLILCSPSNPT 241
P W ++ + +E + K + + +L+ NPT
Sbjct: 123 SDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPT 182
Query: 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE-RTLTVNGF 300
G+ + EIA I + L L D Y+ + L L
Sbjct: 183 GANLTLDQWAEIASI-LEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASC 241
Query: 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSI--SQKAGVAALGLGYAGGE--- 355
SK F + R G + A Q A +
Sbjct: 242 SKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELR 301
Query: 356 -----VVSKMVKAFRERRDFLVKSFGELEG---VKMSEPQGAFYLFIDFSTYYGSEAEGF 407
+ + R+ L +L G + +
Sbjct: 302 ADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGA----------- 350
Query: 408 GKIENSESLCRYLLDKAQVLL 428
+ + + ++ + +
Sbjct: 351 -----TPEQVKRIKEEFGIYM 366
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Score = 123 bits (309), Expect = 5e-32
Identities = 63/355 (17%), Positives = 127/355 (35%), Gaps = 14/355 (3%)
Query: 76 KPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTL 135
K ++ + + G V+ L+ + +F P + E + E YT T
Sbjct: 12 KNLGSLKWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG--PTE 69
Query: 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM 195
E + + +K+ + D I+ + G ++ AV PGD VII P + +
Sbjct: 70 EYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMA 129
Query: 196 ARIADATPVILPTRISENFLLDPKVLESKL--TEKSRLLILCSPSNPTGSVYPKNLLDEI 253
+ + + + + KL + ++ L+ CSP NP G V+ K+ L +I
Sbjct: 130 IKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKI 189
Query: 254 ARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313
IV K +L + ++ I+ + + ++T+T SK F + G +
Sbjct: 190 KDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSN 249
Query: 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373
I + TSG + + G + + + +R
Sbjct: 250 IIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDF 309
Query: 374 SFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+K +G + +IDF + +++ +++ KAQ+
Sbjct: 310 FEVNHPEIKAPLIEGTYLQWIDFR----------ALKMDHKAMEEFMIHKAQIFF 354
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Score = 123 bits (307), Expect = 1e-31
Identities = 81/381 (21%), Positives = 149/381 (39%), Gaps = 26/381 (6%)
Query: 65 DVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG 124
DVS+S V + ++D A + + +I+L+ G+P D +L + A I ++E
Sbjct: 2 DVSMSNHAGLV-FNPIRTVSDNAKP-SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEA 59
Query: 125 -----FTRYTPNAGTLELRSAICHKLKE------ENGLSYTPDQILVSNGAKQSILQAVL 173
Y P G+ E R A+ + E + D +++ +G IL A+
Sbjct: 60 IDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAIT 119
Query: 174 AVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233
A+C GD ++P P + Y + + R ++ D + +K++LLI
Sbjct: 120 AICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKTKLLI 179
Query: 234 LCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM--- 290
+ +PSNP GS + + E +A+ RL + SDEIY +++ + +
Sbjct: 180 VTNPSNPCGSNFSRK-HVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFET 238
Query: 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA---CNKIQSQFTSGASSISQKAGVAAL 347
+ + G +K + GWRLG++ ++ +
Sbjct: 239 TVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGE 298
Query: 348 GLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGF 407
L E + ++V E +L GE G+ + P+GA YL E +
Sbjct: 299 ALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRID------LEKY 352
Query: 408 GKIENSESLCRYLLDKAQVLL 428
I+ LL++ V +
Sbjct: 353 RDIKTDVEFFEKLLEEENVQV 373
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Score = 115 bits (287), Expect = 3e-29
Identities = 46/333 (13%), Positives = 108/333 (32%), Gaps = 15/333 (4%)
Query: 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQ 157
+ + DF T I EA + G Y+ E +AI H ++ +
Sbjct: 2 LPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKND-EFLAAIAHWFSTQHYTAIDSQT 60
Query: 158 ILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILP-TRISENFLL 216
++ + + + G+ V+I P + ++ + T + + + ++ +
Sbjct: 61 VVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFC 120
Query: 217 DPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIY 276
D LE+ L + ++L EI + + + V+SDEI+ +++
Sbjct: 121 DMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVW 180
Query: 277 APATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGAS 336
H ++ + SK+F + Y + G S
Sbjct: 181 GEQPHIPWS--NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS 238
Query: 337 SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFID 395
S S A A + G + + ++ ++ + Q + ++D
Sbjct: 239 SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLD 298
Query: 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428
+ +L + L+++ +V +
Sbjct: 299 LR----------PLNIDDNALQKALIEQEKVAI 321
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} Length = 420 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (252), Expect = 3e-24
Identities = 56/385 (14%), Positives = 120/385 (31%), Gaps = 42/385 (10%)
Query: 35 SRYLHNFNLNKSDRRVLRVMACSGVEEVQVDVSLSPRVNAVKPSKTVAITDQATALAQAG 94
+ H+ +N + +S +K S I A A
Sbjct: 2 HHHHHHMVVNLEGK-------------------ISKIGQNMKSSIIREILKFA-----AD 37
Query: 95 VSVIRLAAGEPDFDT--PVLIAEAGINAIREGF---TRYTPNAGTLELRSAICHKLKEEN 149
I G PD +T +AE I + + +Y+ G L+ I L+
Sbjct: 38 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMY 97
Query: 150 GLSY-TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPT 208
G++ D ++ + G++Q++ ++ P ++ R A V++P
Sbjct: 98 GITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPL 157
Query: 209 RISENFLLDPKV------LESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
L + K+ + + ++ + NP G + I K+
Sbjct: 158 EDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL 217
Query: 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
+V D F L G R+G +AG K F+
Sbjct: 218 FIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSK---VLAPGLRIGMVAGSKEFIR 274
Query: 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKM---VKAFRERRDFLVKSFGELE 379
+ + + +I+ + L ++ + + + L + F ++
Sbjct: 275 KIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIP 334
Query: 380 GVKMSEPQGAFYLFIDFSTYYGSEA 404
GVK + +G ++++ + +
Sbjct: 335 GVKWVKSEGGLFIWLTLPEGFDTWE 359
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 366 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.3 bits (223), Expect = 2e-20
Identities = 42/334 (12%), Positives = 89/334 (26%), Gaps = 35/334 (10%)
Query: 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTP 155
++ L+ F I E + T + ++ L +
Sbjct: 21 ALYDLSGLSGGFL----IDEKDKALLN---TYIGSSYFAEKVNEYGLKHLGGDEN----- 68
Query: 156 DQILVSNGAKQSILQAVLAVCSPGDEVII--PAPFWVSYPEMARIADATPVILPTRISEN 213
D+ + N +IL +LA+ P + P S +I +A
Sbjct: 69 DKCVGFNRTSSAILATILALK-PKKVIHYLPELPGHPSIERSCKIVNAKYF--------- 118
Query: 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
+ +K+ + + ++I S + ++ AK+ +V D+
Sbjct: 119 ESDKVGEILNKIDKDTLVIITGSTMDLKVIELEN--FKKVINT-AKNKEAIVFVDDASGA 175
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333
+ P + + S M G R G +AG K V ++F
Sbjct: 176 RVRLLFNQ------PPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTKFGL 229
Query: 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
A L E + K + + ++ + +
Sbjct: 230 EAQPPLLAGIYR--ALKNFNLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERT 287
Query: 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427
+ I+ + LL ++
Sbjct: 288 PTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGII 321
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Score = 86.0 bits (211), Expect = 3e-19
Identities = 60/346 (17%), Positives = 117/346 (33%), Gaps = 44/346 (12%)
Query: 78 SKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLEL 137
+ I +A LA E F P + + + R ++ EL
Sbjct: 2 NPLDLIAKRAYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEEL 61
Query: 138 RSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR 197
I L + + + + V NGA + + + D + P + Y A+
Sbjct: 62 IEKILSYLDTDF---LSKNNVSVGNGAD----EIIYVMMLMFDRSVFFPPTYSCYRIFAK 114
Query: 198 IADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
A + +P + ++ + +P+NPTG V+ + ++ I +
Sbjct: 115 AVGAKFLEVPLTKDLRIPEVNV-------GEGDVVFIPNPNNPTGHVFEREEIERILK-- 165
Query: 258 AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317
+ L + YE + +E + FSKAF++ R+GY+
Sbjct: 166 --TGAFVALDEAYYEFHGESYVDF------LKKYENLAVIRTFSKAFSLAAQRVGYVVAS 217
Query: 318 KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377
+ F+ A N+++ F S E+ + K E R+ + + E
Sbjct: 218 EKFIDAYNRVRLPFNVSYVSQMFAKVA------LDHREIFEERTKFIVEERERMKSALRE 271
Query: 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
+ G ++++ +G F F + E E L +L K
Sbjct: 272 M-GYRITDSRGNFVFV-------------FMEKEEKERLLEHLRTK 303
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Score = 71.3 bits (173), Expect = 3e-14
Identities = 63/341 (18%), Positives = 107/341 (31%), Gaps = 34/341 (9%)
Query: 83 ITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142
I + AT L + ++ +A PV + A I+ + + RY P+A L A+
Sbjct: 10 IREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNL-DCIERY-PDADYFHLHQALA 67
Query: 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADAT 202
+ IL NG +SI + ++ P +
Sbjct: 68 RHHQ------VPASWILAGNGETESIFTVASGLKPRRAMIVTPGFAEYGRALAQSGCEIR 121
Query: 203 PVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPR 262
+ + LT L LC+P+NPTG + + LL IA
Sbjct: 122 RWS---LREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNI 178
Query: 263 LLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322
L+L + + I + + P +W + +K +A+ G RLGY+
Sbjct: 179 NLILDEAFIDFIPHETGFIPALKDNPHIW----VLRSLTKFYAIPGLRLGYLVNSDDAAM 234
Query: 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382
A + Q S + + V RE ++ +L +
Sbjct: 235 ARMRRQQMPWSVNALAALAGEV-----ALQDSAWQQATWHWLREEGARFYQALCQLPLLT 289
Query: 383 MSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
+ P A YL + L R LL +
Sbjct: 290 V-YPGRANYLLLRCE-------------REDIDLQRRLLTQ 316
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} Length = 354 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Score = 69.4 bits (168), Expect = 1e-13
Identities = 49/330 (14%), Positives = 95/330 (28%), Gaps = 40/330 (12%)
Query: 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY 153
G + L A E + + +N RY P +
Sbjct: 26 GNGDVWLNANEYPTAVEFQLTQQTLN-------RY-PECQPKAVIENYAQYAG------V 71
Query: 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISEN 213
P+Q+LVS GA + I + A C PG + I+ P ++ +
Sbjct: 72 KPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDNW 131
Query: 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH 273
L + ++ N + + ++V + E
Sbjct: 132 QLDLQGI---SDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEF 188
Query: 274 IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTS 333
A A + + SKAFA+ G R G+ + + K+ + +
Sbjct: 189 CPQAS-----LAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVINLLMKVIAPYPL 243
Query: 334 GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLF 393
A + G + + V R++L+ + E+ V+ Y+
Sbjct: 244 STPVADIAAQALSPQ----GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYIL 299
Query: 394 IDFSTYYGSEAEGFGKIENSESLCRYLLDK 423
F + S ++ + L D+
Sbjct: 300 ARF--------------KASSAVFKSLWDQ 315
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.1 bits (134), Expect = 3e-09
Identities = 38/299 (12%), Positives = 85/299 (28%), Gaps = 26/299 (8%)
Query: 126 TRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV---CSPGDEV 182
+ ++ ++ +++ + + G+ +V S+ L + +
Sbjct: 84 PKAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYI 143
Query: 183 IIPAPFWVSYPEMARIADATPVILPTRI-SENFLLDPKVLESKL----TEKSRLLILCSP 237
I P S + A PV++ + + D K +E+K+ E L +
Sbjct: 144 IWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTA 203
Query: 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTL-- 295
L+E+A I A + +I + A +S +
Sbjct: 204 CFAPRVPDR---LEELAVICANY--------DIPHVVNNAYGLQSSKCMHLIQQGARVGR 252
Query: 296 ---TVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGL--G 350
V K F + + F+ +K+ S + S+ + +LG
Sbjct: 253 IDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGY 312
Query: 351 YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGK 409
+ +M + L ++ E P ++ G
Sbjct: 313 RKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGS 371
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 45.7 bits (107), Expect = 7e-06
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 155 PDQILVSNGAKQSILQAVLAVC----SPGDEVIIPAPFWVSYPEMARIADATPV-ILPTR 209
P +I+ ++GA +S A+ G +I + + R + +
Sbjct: 65 PREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLA 124
Query: 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV 257
N ++D K LE+ + + + L+ + +N G V + E+ R
Sbjct: 125 PQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRAR 172
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 100.0 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.96 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.93 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.92 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.9 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.9 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.9 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.86 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.85 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.83 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.82 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.82 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.81 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.79 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.79 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.78 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.76 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.76 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.75 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.75 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.74 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 99.72 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.71 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.71 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.71 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.7 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.7 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.7 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.7 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.69 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 99.69 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.68 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.67 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.66 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.66 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.64 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.62 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.61 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.61 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.6 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.6 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.59 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.59 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.58 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.57 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.56 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.55 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.53 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.53 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.53 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.52 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.39 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.24 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.15 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.03 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.0 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 98.83 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 98.75 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 82.93 |
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=2e-61 Score=477.19 Aligned_cols=349 Identities=44% Similarity=0.777 Sum_probs=325.9
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l 145 (429)
|++++|+++++++.+.++.+.+++++..|+++|+|+.|+|++++|+.+++++.++++++.++|++..|.++||+++++++
T Consensus 1 m~~~~~~~~~~~s~~~~i~~~a~~~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~ 80 (388)
T d1j32a_ 1 MKLAARVESVSPSMTLIIDAKAKAMKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKL 80 (388)
T ss_dssp CCCCHHHHTSCCCSSTTTHHHHHHHHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred CchhhHhhcCCcCHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 146 ~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
.+.+|..+++++|++|+|+++++..+++++++|||+|++++|+|+.|...++..|++++.++...+++|.+|++++++.+
T Consensus 81 ~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 81 QRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HHhcccCCCCceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC-CCCceEEEeccChhc
Q 014172 226 TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG-MWERTLTVNGFSKAF 304 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~i~~~S~SK~~ 304 (429)
+++++++++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++..+.++..... ..+++|+++||||.|
T Consensus 161 ~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~-~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~ 239 (388)
T d1j32a_ 161 TPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEA-GLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY 239 (388)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT
T ss_pred CCCCeEEEECCCCCCCCcccchhhhhhhhcccccC-CeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhh
Confidence 99999999999999999999999999999999999 9999999999999998877777665532 246899999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
+++|+|+||+++++++++.+.+.......+++.+.|.++...+.. .++++++.++.|+++++.+.+.|++++|+++.
T Consensus 240 ~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 316 (388)
T d1j32a_ 240 AMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYEN---SQDCVQEMLAAFAERRRYMLDALNAMPGLECP 316 (388)
T ss_dssp TCTTTCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHS---CSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCC
T ss_pred hcchhHeEEEEECHHHHHHHHHhhhhccccccHHHHHHHhhcccc---hHHHHHHHHHHHHHHHHHHHHHHHhCCCCEec
Confidence 999999999999999999998888777888999999999999887 57899999999999999999999998899999
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+|+||||+|++++... .++.+++++|++++||.+
T Consensus 317 ~p~gg~~l~~~l~~~~----------~~~~~~~~~ll~~~gV~v 350 (388)
T d1j32a_ 317 KPDGAFYMFPSIAKTG----------RSSLDFCSELLDQHQVAT 350 (388)
T ss_dssp CCCBTTEECCBCGGGT----------CCHHHHHHHHHHHHCEEC
T ss_pred CCCceEEEEEECCCCC----------CCHHHHHHHHHHhCCEEE
Confidence 9999999999998531 378899999999999986
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.6e-59 Score=462.75 Aligned_cols=346 Identities=42% Similarity=0.705 Sum_probs=314.6
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLK 146 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~ 146 (429)
.+|+|+++++||.+.++.+.+++++..|+++|+|+.|+|++++|+++++++.+++.++.++|++..|.++||+++++++.
T Consensus 3 ~~~~r~~~~~~s~~~~i~~~a~~~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~ 82 (382)
T d1b5pa_ 3 GLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFR 82 (382)
T ss_dssp CCCHHHHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhh
Confidence 38999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred hhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 147 EENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 147 ~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+.+|..+++++|++|+|+++++..++++++++||.|++++|+|+.|...++.+|++++.+++.+++++.+|++.+++.++
T Consensus 83 ~~~~~~~~~~~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 162 (382)
T d1b5pa_ 83 RENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT 162 (382)
T ss_dssp HTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC
T ss_pred hhcccccccccceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++|+||||||.+++.+++++|+++|++| |++||+||+|.++.|++....+.. . ..+++|+++||||.|++
T Consensus 163 ~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~-~--~~~~~i~~~s~SK~~~~ 238 (382)
T d1b5pa_ 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEH-DFYLVSDEIYEHLLYEGEHFSPGR-V--APEHTLTVNGAAKAFAM 238 (382)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCGGG-T--CTTTEEEEEESTTTTTC
T ss_pred CCCeEEEECCCCCCcchhCCHHHHHHHHHHHHHc-CeEEEEEccccceecCCCCCCHHH-c--CCCCEEEEecchhhccC
Confidence 9999999999999999999999999999999999 999999999999999876544433 2 25799999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+.......+++.+.|.++..++........++...++.|+++++.+.+.+.+. |+++..|
T Consensus 239 ~GlR~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p 317 (382)
T d1b5pa_ 239 TGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-GLKAVRP 317 (382)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCC
T ss_pred cHhheEEEEECHHHHHHHHHHHHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-CCeEecC
Confidence 999999999999999999988888888899999988887776422235667788899999999999999887 8999999
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+||||+|++++... .++..+.+.|+++ ||.+
T Consensus 318 ~gg~~~~~~~~~~~----------~~~~~~~~~l~e~-gV~v 348 (382)
T d1b5pa_ 318 SGAFYVLMDTSPIA----------PDEVRAAERLLEA-GVAV 348 (382)
T ss_dssp SBTTEEEEECTTTC----------SSHHHHHHHHHHT-TEEC
T ss_pred CceEEEeEeCCCCC----------CCHHHHHHHHHHC-CEEE
Confidence 99999999997531 2677787777665 9976
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.3e-57 Score=445.97 Aligned_cols=344 Identities=42% Similarity=0.643 Sum_probs=312.9
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+|.|++.++++.++++.+.+.. .+++|+|+.|+|++++|+.+.+++.+++.++.++|++..|.++||++||+++.+
T Consensus 2 ~s~~~~~~~~s~ir~~~~~~~~----~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~ 77 (388)
T d1gdea_ 2 LSDRLELVSASEIRKLFDIAAG----MKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKK 77 (388)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHH----CTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhhhhhCCccHHHHHHHHHhC----CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHh
Confidence 5788899999998888776553 467999999999999999999999999988888999999999999999999988
Q ss_pred hcCCC-CCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~-~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.++.. ..+++|++|+|+++++..++++++++||+|++++|+|..|...++..|++++.+|++.+++|.+|+++|++.++
T Consensus 78 ~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (388)
T d1gdea_ 78 QNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT 157 (388)
T ss_dssp HHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC
T ss_pred hccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc
Confidence 77754 44578999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++....++..+....+++|+++||||.||+
T Consensus 158 ~~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~-~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 236 (388)
T d1gdea_ 158 DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEH-DLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 236 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred cCCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHc-CCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccC
Confidence 9999999999999999999999999999999999 999999999999999887777888887767899999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.........+++.+.|.++..++..+.. .+++...++.|+++++.+.+.|... ++.+..|
T Consensus 237 ~GlR~G~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p 314 (388)
T d1gdea_ 237 TGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERS-WKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKP 314 (388)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCC
T ss_pred ccccEEEEEeeccchhhhhhccccccccccccchhhHHHHHhhccc-hhHHHHHHHHHHHhhhhhhhhhhhc-cccccCC
Confidence 9999999999999999999988888889999999999999976321 4557788899999999999999987 7888899
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+||+|+|+++++. ..++.+|+++|++++||.+
T Consensus 315 ~gg~fl~~~l~~~----------~~~~~~~~~~ll~e~gV~v 346 (388)
T d1gdea_ 315 KGAFYIFPRIRDT----------GLTSKKFSELMLKEARVAV 346 (388)
T ss_dssp CBTTEECCBCGGG----------TCCHHHHHHHHHHHTCEEC
T ss_pred CceEEEEEECCCC----------CCCHHHHHHHHHHhCCEEE
Confidence 9999999999753 1378999999999999976
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-56 Score=442.54 Aligned_cols=347 Identities=31% Similarity=0.519 Sum_probs=302.3
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCC---CCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEP---DFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~---~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia 142 (429)
+..|+|+.+++ +.++++...++++++.|+++|+|+.|+| +|++|+.+++++.+++.++.++|++..|.++||++|+
T Consensus 2 ~~~s~r~~~~~-~~ir~i~~~a~~l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia 80 (395)
T d1xi9a_ 2 IRASKRALSVE-YAIRDVVLPARELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 80 (395)
T ss_dssp CCCCHHHHTCC-C-------CHHHHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred ccchhccccCc-HHHHHHHHHHHHHHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Confidence 45788888885 6788888899999999999999999997 7899999999999999888889999999999999999
Q ss_pred HHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHH
Q 014172 143 HKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLE 222 (429)
Q Consensus 143 ~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 222 (429)
+++++.+|+.+++++|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.++...+++|.+|++.++
T Consensus 81 ~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~ 160 (395)
T d1xi9a_ 81 EREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 160 (395)
T ss_dssp HHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred hhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccCh
Q 014172 223 SKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSK 302 (429)
Q Consensus 223 ~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 302 (429)
+.+.++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++.. .+...+.. .+++|+++||||
T Consensus 161 ~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~-~~~ii~De~y~~~~~~~~~-~~~~~~~~-~~~vi~~~S~SK 237 (395)
T d1xi9a_ 161 KKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY-EIPVISDEIYDLMTYEGEH-ISPGSLTK-DVPVIVMNGLSK 237 (395)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBSSSCC-CCHHHHCS-SSCEEEEEESTT
T ss_pred HhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhc-CeeEEeccccccccccccc-cchhhcCC-CCCEEEEeCcch
Confidence 99999999999999999999999999999999999999 9999999999999887543 33333333 578999999999
Q ss_pred hcccccceeeEEEc--CHHHHHHHHH---HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 303 AFAMTGWRLGYIAG--PKHFVAACNK---IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 303 ~~~~~G~R~G~v~~--~~~~~~~l~~---~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
.|+++|+|+||+++ +...+..+.+ .......+++.++|.++..++.. .++|+++.++.|+++|+.+.+.|++
T Consensus 238 ~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~L~~ 314 (395)
T d1xi9a_ 238 VYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLTG---PMDYLKEYMKKLKERRDYIYKRLNE 314 (395)
T ss_dssp TTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHS---CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999875 3333333322 23445667899999999999987 5789999999999999999999999
Q ss_pred CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++.+..|+||||+|++++... ..++.+++.+|++++||.+
T Consensus 315 ~~~~~~~~p~gg~~~~~~l~~~~---------~~~~~~~~~~ll~~~gV~v 356 (395)
T d1xi9a_ 315 IPGISTTKPQGAFYIFPKIEVGP---------WKNDKEFVLDVLHNAHVLF 356 (395)
T ss_dssp STTEECCCCCBSSEECCEECSCS---------CSSHHHHHHHHHHHHCEEC
T ss_pred CCCceecCCCeeEEEeEECCCCC---------CCCHHHHHHHHHHhCCEEE
Confidence 87788999999999999997531 1478899999999999986
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=1.8e-54 Score=431.49 Aligned_cols=356 Identities=24% Similarity=0.459 Sum_probs=313.3
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC---CCCCCCCCCCHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG---FTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~---~~~Y~~~~G~~~lr~~ia 142 (429)
+.++.|+++++++.+.++.+++.. .++|+|+.|+|++++|+.+++++.+++.+. .++|++..|.++||++||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA 76 (418)
T d2r5ea1 2 FDLPKRYQGSTKSVWVEYIQLAAQ-----YKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALS 76 (418)
T ss_dssp CCCCGGGTTCCCCHHHHHHHHHHH-----HCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHH
T ss_pred CchhhhhcCCCCCHHHHHHHHhcC-----CCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHH
Confidence 568999999999999888766654 258999999999999999999999998653 467999999999999999
Q ss_pred HHHHhhcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC--------C
Q 014172 143 HKLKEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE--------N 213 (429)
Q Consensus 143 ~~l~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~--------~ 213 (429)
+++++.+|.++++ ++|++|+|+++++..++++++++||.|++++|+|+.|...+...|++++.+++++++ .
T Consensus 77 ~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~ 156 (418)
T d2r5ea1 77 KLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSAD 156 (418)
T ss_dssp HHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGG
T ss_pred HHHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhh
Confidence 9999999999886 799999999999999999999999999999999999999999999999999987643 3
Q ss_pred CCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCc
Q 014172 214 FLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWER 293 (429)
Q Consensus 214 ~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 293 (429)
+.++++.+.+...++++++++|+||||||.+++.+++++|+++|++| +++||+||+|.++.|++....++..+....++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~-~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~ 235 (418)
T d2r5ea1 157 WVLDNNELEALFNEKTKMIIINTPHNPLGKVMDRAELEVVANLCKKW-NVLCVSDEVYEHMVFEPFEHIRICTLPGMWER 235 (418)
T ss_dssp EECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGG
T ss_pred hhhhHHHHhhhhhccccceecCCcCccccccccHHHHHHHhhhhhcC-CeeeecccchhhhccCCCccccccccccccce
Confidence 56789999998888999999999999999999999999999999999 99999999999999988777788888777899
Q ss_pred eEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcC----CCChHHHHHHHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLG----YAGGEVVSKMVKAFRERRD 369 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~----~~~~~~~~~~~~~~~~~r~ 369 (429)
++++.||||.++++|+|+||+++++++++.+.+.......+.+.+.|.++...+... ...++|++++++.|+.+|+
T Consensus 236 ~i~~~S~SK~~~~pGlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ 315 (418)
T d2r5ea1 236 TITIGSAGKTFSLTGWKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRD 315 (418)
T ss_dssp EEEEEEHHHHTTCGGGCCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHH
T ss_pred eeeeecCCccccCCCcccccccccchhhhhhhhcccccccccccchhhhccccccccccccccchhhHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999888788888999998887766431 1135789999999999999
Q ss_pred HHHHHhccCCCceeecCCceEEEEEecCCccCCc-ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 370 FLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE-AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 370 ~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+.|+++ |+++..|+||||+|++++...... ........++.+|+++|++++||.+
T Consensus 316 ~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v 374 (418)
T d2r5ea1 316 YMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQG 374 (418)
T ss_dssp HHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEEC
T ss_pred hHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEE
Confidence 999999998 999999999999999997642211 0111122368899999999999986
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-54 Score=423.93 Aligned_cols=339 Identities=37% Similarity=0.664 Sum_probs=310.3
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
+|+|+.+++.+.+.++.+.+++++++|+++|+|+.|+|++++|+.+.+++.+.+.++.++|++..|.++||+++++++.+
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~ 80 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGE 80 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHHHHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CchhhhhCCCCHHHHHHHHHHHHHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|..+++++|++|+|+++++..++++++++||.|++++|+|+.|...+...|...+.++...++++.+|.+.++....+
T Consensus 81 ~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (375)
T d1o4sa_ 81 RYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVG 160 (375)
T ss_dssp HHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCCT
T ss_pred ccccccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
+++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.+++.... .....+..+++|+++||||.|+++
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~i~~~S~SK~~~l~ 238 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKR-NFYIISDEVYDSLVYTDEFTS-ILDVSEGFDRIVYINGFSKSHSMT 238 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTSBCSSCCCC-HHHHCSSSTTEEEEEESTTTTTCG
T ss_pred CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHc-CCceehHhhhccccccccccc-cccccCCCCCEEEEeechhhccCC
Confidence 999999999999999999999999999999999 999999999999887654433 334455579999999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|+|+||+++++++++.+...........+...+..+...++. +....++.++++++.+.+.|+++ |+++.+|+
T Consensus 239 G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~l~~~-g~~~~~p~ 311 (375)
T d1o4sa_ 239 GWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEV------DNSYMVQTFKERKNFVVERLKKM-GVKFVEPE 311 (375)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTC------CCHHHHHHHHHHHHHHHHHHHHT-TCCCCCCS
T ss_pred ccccccccccccchhhhhhhhccccccccccchhhhhhhccc------chhhhHHHHHHHHHHHHHHHHhc-CceEecCC
Confidence 999999999999999998888888877888888777665543 34456778999999999999988 99999999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
||||+|++++. ++.+++.+|++++||.|
T Consensus 312 gg~f~~~~~~~-------------~~~~~~~~ll~~~gV~v 339 (375)
T d1o4sa_ 312 GAFYLFFKVRG-------------DDVKFCERLLEEKKVAL 339 (375)
T ss_dssp BSSEEEEECSS-------------CHHHHHHHHHHHHCEEC
T ss_pred ccEEEEEECCC-------------CHHHHHHHHHHhCCEEE
Confidence 99999999984 68899999999989986
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-53 Score=415.50 Aligned_cols=341 Identities=27% Similarity=0.472 Sum_probs=308.2
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
.+.++..+..+.+.++.+.++. +++|+|+.|+|++++|+.+.+++.+++.++.++|++..|.++||++||+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~a~~-----~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~ 78 (382)
T d1u08a_ 4 PQSKLPQLGTTIFTQMSALAQQ-----HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTER 78 (382)
T ss_dssp CCCSCCCCCCCHHHHHHHHHHH-----TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred chhhCCCCCCcHHHHHHHHhcc-----CCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 3456777777777777776543 47999999999999999999999999988888999999999999999999999
Q ss_pred hcCCCCCCC-cEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTPD-QILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~~-~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
.+|.+++++ +|++|+|+++++.+++++++++||.|++++|+|+.+...+...|++++.++.+. +++.+|++++++.+.
T Consensus 79 ~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~ 157 (382)
T d1u08a_ 79 LYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLS 157 (382)
T ss_dssp HHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCC
T ss_pred HhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhccccceeccccc-ccccCCHHHHhhhhc
Confidence 999988876 599999999999999999999999999999999999999999999998888754 667889999999999
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++++++++||||||++++.+++++|+++|+++ +++++.|+.|..+.+.+.............+++|++.|+||.+++
T Consensus 158 ~~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~-~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~ 236 (382)
T d1u08a_ 158 ERTRLVILNTPHNPSATVWQQADFAALWQAIAGH-EIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHM 236 (382)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTS-CCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTC
T ss_pred cCccEEEECCCCcccccccccccchhhhhhhccc-cceeeeecchhhccccccccccccccccccCcEEEEeeccccccC
Confidence 9999999999999999999999999999999999 999999999999888776555555554556899999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+.......+++.+.|.++..++.. ..+++.++++.|+++|+.+.+.+... |+++.+|
T Consensus 237 pG~RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p 312 (382)
T d1u08a_ 237 TGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRA---EPEHYLALPDFYRQKRDILVNALNES-RLEILPC 312 (382)
T ss_dssp GGGCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH---CTHHHHTHHHHHHHHHHHHHHHTTSS-SCEECCC
T ss_pred CcccchhhhccchhHHHHHhhhccccccccccccccccccccc---chHHHHHHHHHHHhhhhhhhhhhccC-CcEEecC
Confidence 9999999999999999999988888889999999999999987 47899999999999999999999876 8999999
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+||||+|++++... ..++.+|+++|++++||.+
T Consensus 313 ~gg~~~~~~~~~~~---------~~d~~e~~~~ll~e~gV~v 345 (382)
T d1u08a_ 313 EGTYFLLVDYSAVS---------TLDDVEFCQWLTQEHGVAA 345 (382)
T ss_dssp CBSSEEEEECTTTC---------CSCHHHHHHHHHHHSCEEC
T ss_pred CceEEEEEecCCCC---------CCCHHHHHHHHHHHCCEEE
Confidence 99999999998641 1478999999999999986
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-54 Score=427.09 Aligned_cols=354 Identities=28% Similarity=0.511 Sum_probs=310.7
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcC--CCCCCCCCCCHHHHHHHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREG--FTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~--~~~Y~~~~G~~~lr~~ia~~l 145 (429)
.+.|++.++++++.++.+.+ .++++|+|+.|+|++++|+.+.+++.+++.++ .++|++..|.++||++|++++
T Consensus 3 ~~~r~~~~~~~~~~~~~~~~-----~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~ 77 (418)
T d1w7la_ 3 QARRLDGIDYNPWVEFVKLA-----SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFF 77 (418)
T ss_dssp SCGGGTTCCCCTHHHHHHHH-----HTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHH
T ss_pred cCccccCCCCCHHHHHHHHh-----CCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHH
Confidence 46789999999887776543 35689999999999999999999999998754 457999999999999999999
Q ss_pred HhhcCCCCCC-CcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC----------CCCC
Q 014172 146 KEENGLSYTP-DQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI----------SENF 214 (429)
Q Consensus 146 ~~~~g~~~~~-~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----------~~~~ 214 (429)
++.+|.++++ ++|++|+|+++++.+++++++++||.|++++|+|+.|...+...|++++.++..+ +.++
T Consensus 78 ~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~ 157 (418)
T d1w7la_ 78 GELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNW 157 (418)
T ss_dssp HHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGE
T ss_pred HHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccCc
Confidence 9999988886 6899999999999999999999999999999999999999999999999988764 3456
Q ss_pred CCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCce
Q 014172 215 LLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERT 294 (429)
Q Consensus 215 ~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 294 (429)
.+|.+++.....++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++.++....+++
T Consensus 158 ~~d~~~~~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 236 (418)
T d1w7la_ 158 QLDPMELAGKFTSRTKALVLNTPNNPLGKVFSREELELVASLCQQH-DVVCITDEVYQWMVYDGHQHISIASLPGMWERT 236 (418)
T ss_dssp ECCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGE
T ss_pred ccchhhhhccccccccceeccCcCCcccccccHHHHHHHHHHHHhc-CCCchhhhhhHHhhcCCCCCCCHHHcccccccc
Confidence 7889999888888999999999999999999999999999999999 999999999999999988788888887777899
Q ss_pred EEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCC----CChHHHHHHHHHHHHHHHH
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGY----AGGEVVSKMVKAFRERRDF 370 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~~~~~~~~~~~~~~~r~~ 370 (429)
+++.||||.++++|+|+||+++++++++.+.+.......+++.+.|.++..++.... ...+++..+++.|+++|+.
T Consensus 237 i~~~S~SK~~~~pG~RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~ 316 (418)
T d1w7la_ 237 LTIGSAGKTFSATGWKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDH 316 (418)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHH
T ss_pred ceecccCccccCCCCcccccccchhhhhhhccccccccccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhh
Confidence 999999999999999999999999999999999888888999999999988876411 1246788999999999999
Q ss_pred HHHHhccCCCceeecCCceEEEEEecCCccCCc--ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 371 LVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSE--AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 371 l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.|+++ |+++.+|+||||+|+++++..... ..+.....++.+++++|++++||.|
T Consensus 317 l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v 375 (418)
T d1w7la_ 317 MIRSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVA 375 (418)
T ss_dssp HHHHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEEC
T ss_pred hhhhhhhc-CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEE
Confidence 99999998 999999999999999997532210 0111112357899999999999976
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.4e-52 Score=413.67 Aligned_cols=338 Identities=26% Similarity=0.454 Sum_probs=297.4
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
||+|++++++++++++...+.+.+..|.++|+|+.|+|++++|+.+.+++.++. .+.++|++..|.++||+++++++.+
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~ 79 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEMAKKRGVRIHHLNIGQPDLKTPEVFFERIYENK-PEVVYYSHSAGIWELREAFASYYKR 79 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHHHHHTTCEEEECSSCCCCSCCCTHHHHHHHHTC-CSSCCCCCTTCCHHHHHHHHHHHHH
T ss_pred CChhhhcCCCCHHHHHHHHHHHHHHcCCCEEECCCCCCCCCCCHHHHHHHHhcC-CCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 688999999999999999998888899999999999999999999999887753 4578899999999999999999999
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+|+.+++++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.++.+.++ +..+.+.+...+.+
T Consensus 80 ~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~ 158 (389)
T d2gb3a1 80 RQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEE-GFAIPQNLESFINE 158 (389)
T ss_dssp TSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGG-TSCCCTTGGGGCCT
T ss_pred hcCCCcccceEEecccccccccccccccccCCCeEEEeCCCCccccccccccCcccccccccccc-ccchhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999987544 44566777888888
Q ss_pred CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccc
Q 014172 228 KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMT 307 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 307 (429)
+++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+... .. ..++++++.|+||.++++
T Consensus 159 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~-~~~iI~De~y~~~~~~~~~~~~~-~~--~~~~~~v~~s~sK~~~~~ 234 (389)
T d2gb3a1 159 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERH-GLFLIVDEVYSEIVFRGEFASAL-SI--ESDKVVVIDSVSKKFSAC 234 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCGG-GS--CCTTEEEEEESTTTTTCG
T ss_pred CccEEEeCCCCccccccchHHHHHHHHhhcccC-CEEEEEecccccccccccccccc-cc--ccccccccccccccccCc
Confidence 999999999999999999999999999999999 99999999999999887544332 22 357899999999999999
Q ss_pred cceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 308 GWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
|||+||++++.+.+............+++.+.|.++..++.. .+++++.+++.|+++|+.+.+.|+++++..+..|+
T Consensus 235 GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~ 311 (389)
T d2gb3a1 235 GARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNL---DDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPS 311 (389)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCS
T ss_pred ccceeeeeccchhHHHHHhhhhhccccccccccccccccccc---cchhcccccccccccchhhhhhhhhhccccccCCC
Confidence 999999999776554444444445666788888888888876 57899999999999999999999998556778899
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
+|||+|+++|.. ++.+|+++|++++++
T Consensus 312 ~g~~~~~~lp~~------------~~~~~~~~ll~e~~l 338 (389)
T d2gb3a1 312 GAFYITAELPVE------------DAEEFARWMLTDFNM 338 (389)
T ss_dssp BSSEEEEECSSS------------CHHHHHHHHHHSCCB
T ss_pred ceEEEEEeCCCC------------CHHHHHHHHHHhhhh
Confidence 999999999853 789999999987543
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=9.9e-52 Score=410.79 Aligned_cols=353 Identities=23% Similarity=0.391 Sum_probs=285.3
Q ss_pred ccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCC----hHHHHHHHHHHHHc-CCCCCCCCCCCHHHH
Q 014172 64 VDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT----PVLIAEAGINAIRE-GFTRYTPNAGTLELR 138 (429)
Q Consensus 64 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~----p~~v~~a~~~~~~~-~~~~Y~~~~G~~~lr 138 (429)
||.+++... +..-++++.+.+.++. ...+.++|+|+.|+|++++ ++.+++++.+.+.. ..++|++..|.++||
T Consensus 1 ~~~~~~~~~-~~~~~pir~~~~~~~~-~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR 78 (412)
T d1bw0a_ 1 WDVSMSNHA-GLVFNPIRTVSDNAKP-SPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAR 78 (412)
T ss_dssp CCCCCCHHH-HTCCCHHHHHHHTCCC-CCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHH
T ss_pred CCCChhhcc-cCCccHHHHHHHhcCC-CCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHH
Confidence 455555553 3344555554443321 1234579999999988665 36788888877764 356899999999999
Q ss_pred HHHHHHHHhhcC------CCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCC
Q 014172 139 SAICHKLKEENG------LSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISE 212 (429)
Q Consensus 139 ~~ia~~l~~~~g------~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 212 (429)
++||+++++.++ ..+++++|++|+|+++++..++++++++||+|++++|+|+.|...++..|++++.+++++++
T Consensus 79 eaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~ 158 (412)
T d1bw0a_ 79 EAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPEN 158 (412)
T ss_dssp HHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGG
T ss_pred HHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhccCcccccccccccc
Confidence 999999998864 34788999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC---C
Q 014172 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP---G 289 (429)
Q Consensus 213 ~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~---~ 289 (429)
+|.++++.+++.+.++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.+..... .
T Consensus 159 ~~~~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~-~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~ 237 (412)
T d1bw0a_ 159 DWEADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEEL-RLPLFSDEIYAGMVFKGKDPNATFTSVADFE 237 (412)
T ss_dssp TTEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH-TCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred ccchhhHHHHhhhhccccccccccccccccccchhhhccccccccccC-CeeeechhhHHHhccCCCCCccccccccccc
Confidence 899999999999999999999999999999999999999999999999 999999999999999876554433321 2
Q ss_pred CCCceEEEeccChhcccccceeeEEEcCH------HHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTGWRLGYIAGPK------HFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G~R~G~v~~~~------~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
...++++++||||.++++|||+||+++++ .++....+.... ..+++...|.++...+... .++++.++++.
T Consensus 238 ~~~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 314 (412)
T d1bw0a_ 238 TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGML-VCGPCTVVQAALGEALLNT--PQEHLDQIVAK 314 (412)
T ss_dssp CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHH-HTCSCHHHHHHHHHHHHSS--CHHHHHHHHHH
T ss_pred cccccccccccCccCccCCCCcccccccchhhcchhhhhhhcccccc-ccCCchhhhhhcccccccc--cccccccccch
Confidence 24568899999999999999999999864 344444444333 3345566666555555432 47899999999
Q ss_pred HHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++|+.+.+.|.+.+|+.+..|+||||+|++++... .....++.+|+++|++++||++
T Consensus 315 ~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~------~~~~~~~~~~~~~ll~~~gV~v 373 (412)
T d1bw0a_ 315 IEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEK------YRDIKTDVEFFEKLLEEENVQV 373 (412)
T ss_dssp HHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGG------BSSCCSHHHHHHHHHHHHCEEC
T ss_pred hHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhh------cCCCCCHHHHHHHHHHhCCEEE
Confidence 9999999999998877999999999999999987421 1123478999999999999986
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=3.4e-51 Score=404.57 Aligned_cols=331 Identities=21% Similarity=0.311 Sum_probs=280.4
Q ss_pred HHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEe
Q 014172 82 AITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVS 161 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t 161 (429)
+......+.+..|+++|+|+.|+|+|++|+++++++.++++++.++|+ .|.++||++|++|+++++|+++++++|++|
T Consensus 18 k~~~~~~~~~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~--~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt 95 (394)
T d1c7na_ 18 KWDLMYSQNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYT--GPTEEYKKTVKKWMKDRHQWDIQTDWIINT 95 (394)
T ss_dssp HHHHHHHHCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSB--CCCHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred HHHHHHHHhHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCC--CCCHHHHHHHHHHHHHhcCCCCCCcceEee
Confidence 333344455567889999999999999999999999999988888884 478999999999999999999999999999
Q ss_pred cChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhcc-cCCcEEEEcCCCC
Q 014172 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSN 239 (429)
Q Consensus 162 ~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~-~~~~~i~l~~p~N 239 (429)
+|+++++.++++++++|||.|++++|.|.++...++..|++.+.++...+ .++.+|.+.++..+. ++++++++|+|||
T Consensus 96 ~G~~~al~~~~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~N 175 (394)
T d1c7na_ 96 AGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHN 175 (394)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBT
T ss_pred ccchhhhhhhhccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEeccccc
Confidence 99999999999999999999999999999999999999999999987543 456789999888764 5789999999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC-CCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-GMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~-~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
|||.+++.+++++|+++|++| +++||+||+|.++.|++..+.+..... ...++++++.||||.|+++|||+||+++++
T Consensus 176 PTG~v~s~~~l~~l~~~a~~~-~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~ 254 (394)
T d1c7na_ 176 PVGRVWKKDELQKIKDIVLKS-DLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKN 254 (394)
T ss_dssp TTTBCCCHHHHHHHHHHHHHS-SCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCC
T ss_pred ccceeccHHHhhhhhcccccc-ceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccC
Confidence 999999999999999999999 999999999999999876665544432 235789999999999999999999998765
Q ss_pred -HHHHHHHHHhhcccCCCchHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEe
Q 014172 319 -HFVAACNKIQSQFTSGASSISQKA-GVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFID 395 (429)
Q Consensus 319 -~~~~~l~~~~~~~~~~~~~~~q~a-a~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~ 395 (429)
.+.+.+.+.......++....+.+ +...... ..++.+++++.++++++.+.+.++. .+++++..|+|+||+|++
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~ 331 (394)
T d1c7na_ 255 PDIRERFTKSRDATSGMPFTTLGYKACEICYKE---CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWID 331 (394)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEE
T ss_pred hhhhhhhhhhhhhccccccccccchhhhhhhcc---hhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEE
Confidence 566667666655555544444433 3334443 4788999999999999999998886 468888899999999999
Q ss_pred cCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 396 FSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 396 l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.. + .++.+|+++|++++||++
T Consensus 332 ~~~~-~---------~~~~~~~~~Ll~~~gV~v 354 (394)
T d1c7na_ 332 FRAL-K---------MDHKAMEEFMIHKAQIFF 354 (394)
T ss_dssp CGGG-C---------CCHHHHHHHHHHTTCCCC
T ss_pred CCCC-C---------CCHHHHHHHHHHhCCEEE
Confidence 9863 1 378999999999999976
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.2e-48 Score=382.61 Aligned_cols=329 Identities=30% Similarity=0.512 Sum_probs=287.6
Q ss_pred ccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Q 014172 66 VSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKL 145 (429)
Q Consensus 66 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l 145 (429)
|++++|...++.+.+..+...+++. ++|||+.|+|++++|+.+.+++.+++.+ .++|++..|.++||++||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~la~~~-----~~I~ls~g~p~~~~p~~i~~al~~~l~~-~~~Y~~~~G~~elr~aiA~~~ 74 (368)
T d1v2da_ 1 MRLHPRTEAAKESIFPRMSGLAQRL-----GAVNLGQGFPSNPPPPFLLEAVRRALGR-QDQYAPPAGLPALREALAEEF 74 (368)
T ss_dssp CCCCGGGGGC---CHHHHHHHHHHH-----TCEECCCCSCSSCCCHHHHHHHHHHTTT-SCSCCCTTCCHHHHHHHHHHH
T ss_pred CCCChhhhhcCCCHHHHHHHHhccC-----CCEEecCCCCCCCCCHHHHHHHHHHhhc-ccCCCCCcCCHHHHHHHHhhc
Confidence 6789999999999998887776653 4899999999999999999999998754 578999999999999999997
Q ss_pred HhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhh
Q 014172 146 KEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESK 224 (429)
Q Consensus 146 ~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~ 224 (429)
+ +++++|++|+|+++++..++.+++++||.|++++|+|+.+...++..|.+++.++++.. +++.+|++.++++
T Consensus 75 ~------~~~~~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~ 148 (368)
T d1v2da_ 75 A------VEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKA 148 (368)
T ss_dssp T------SCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTT
T ss_pred c------cCCcceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHh
Confidence 4 68899999999999999999999999999999999999999999999999999988543 5578999999999
Q ss_pred cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 225 LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 225 l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
++++++++++++||||||.+++.+++++|+++|++| +++||+||+|..+.+.......... ..++.+++.|+||.+
T Consensus 149 ~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~-~i~ii~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~sk~~ 224 (368)
T d1v2da_ 149 LTPRTRALLLNTPMNPTGLVFGERELEAIARLARAH-DLFLISDEVYDELYYGERPRRLREF---APERTFTVGSAGKRL 224 (368)
T ss_dssp CCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBSSSCCCCHHHH---CTTTEEEEEEHHHHT
T ss_pred hccCceEEEEcCCCCcccccCCHHHHHHHHHHHHHc-CCeeeechhhhhhcccccccccccc---cccccceeecccccc
Confidence 999999999999999999999999999999999999 9999999999987665543322222 247889999999999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
+++|+|+||+++++++++.+.+.......+++.+.|.++..++..+.. .++++.+++.|+++++++.+.|+++ |+++.
T Consensus 225 ~~~G~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~-g~~~~ 302 (368)
T d1v2da_ 225 EATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARR-EGFYEALREGYRRRRDLLAGGLRAM-GLRVY 302 (368)
T ss_dssp TCGGGCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHT-TCCEE
T ss_pred cccccccccccccccccchhhhhhhccccccccccccccccccccccc-hhhHHHHHHHHHHhhhhhhhhHHhc-CcEEe
Confidence 999999999999999999999998888889999999998888875322 4688999999999999999999998 99999
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|+++||+|+++|+. +.. +|++++||.+
T Consensus 303 ~p~g~~~~~~~l~~~------------~~~----~ll~~~gI~v 330 (368)
T d1v2da_ 303 VPEGTYFLMAELPGW------------DAF----RLVEEARVAL 330 (368)
T ss_dssp CCSBSSEEEEECTTC------------CHH----HHHHHTCEEC
T ss_pred cCCceeEEEEeCCcc------------HHH----HHHHhCCEEE
Confidence 999999999999853 433 4577789986
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.7e-49 Score=394.16 Aligned_cols=345 Identities=21% Similarity=0.319 Sum_probs=289.8
Q ss_pred cccccccc--CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCC--hHHHHHHHHHHHHcC---CCCCCCCC
Q 014172 60 EEVQVDVS--LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREG---FTRYTPNA 132 (429)
Q Consensus 60 ~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~--p~~v~~a~~~~~~~~---~~~Y~~~~ 132 (429)
.-|.+++. +|+.-++++++.++++... ..++++|+|+.|.|+..+ ++.+.+++.++++.. .++|++..
T Consensus 6 ~~~~~~~~~~~s~~~~~~~~s~ir~~~~~-----~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~ 80 (420)
T d1vp4a_ 6 HHMVVNLEGKISKIGQNMKSSIIREILKF-----AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTE 80 (420)
T ss_dssp CSHHHHHHHHCCHHHHTCCCCCHHHHTTT-----TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTT
T ss_pred ccCcccHHHHHhHHHHhCCCcHHHHHHHH-----hCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCc
Confidence 34666665 8999999999988877543 256789999999998664 456677777766543 36899999
Q ss_pred CCHHHHHHHHHHHHhhcCCC-CCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC
Q 014172 133 GTLELRSAICHKLKEENGLS-YTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS 211 (429)
Q Consensus 133 G~~~lr~~ia~~l~~~~g~~-~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 211 (429)
|.++||++||+++++.+|+. +++++|++|+|+++++.+++.+++++||.|++++|+|+.|...++..|++++.+|.+++
T Consensus 81 G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~ 160 (420)
T d1vp4a_ 81 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD 160 (420)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhccccccccc
Confidence 99999999999999999986 78899999999999999999999999999999999999999999999999999998653
Q ss_pred CCCCCCHHHHHhhcc--------cCC-cEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCC
Q 014172 212 ENFLLDPKVLESKLT--------EKS-RLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT 282 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~--------~~~-~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~ 282 (429)
+ ++++.++..+. .++ .++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....
T Consensus 161 ~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~-~i~ii~De~y~~l~~~~~~~~ 236 (420)
T d1vp4a_ 161 G---MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKY-DLFIVEDDPYGALRYEGETVD 236 (420)
T ss_dssp E---ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECSSTTCBCSSCCCC
T ss_pred c---cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcc-cccccccchhhhccccCcccc
Confidence 3 68777655432 133 3455799999999999999999999999999 999999999999999876555
Q ss_pred ccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 283 SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 283 ~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
+...... .+++++++|+||.++ +|+|+||+++++++++.+.+.......+++.+.|.++..++..+.. .+++++.++
T Consensus 237 ~~~~~~~-~~~~i~~~s~sk~~~-~G~RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~a~~l~~~~~-~~~~~~~~~ 313 (420)
T d1vp4a_ 237 PIFKIGG-PERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL-LEQLKPTIE 313 (420)
T ss_dssp CHHHHHC-TTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCH-HHHTHHHHH
T ss_pred ccccccc-ccceeEEeccccccc-cccccccccccchhhhhhhhhhhhccccCchhhhhhhhhhcccccc-cccchhHHH
Confidence 5544433 588999999999885 9999999999999999999998888888999999999888886442 677888889
Q ss_pred HHHHHHHHHHHHhcc----CCCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 363 AFRERRDFLVKSFGE----LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~----l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|+++++.+.+.|++ ++|+++.+|+||||+|+++++. .++.++++.|.++ ||.|
T Consensus 314 ~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~-----------~d~~~~~~~l~~~-gV~v 371 (420)
T d1vp4a_ 314 LYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG-----------FDTWEMFEYAKRK-KVFY 371 (420)
T ss_dssp HHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTT-----------CCTTTTHHHHHHH-TEEC
T ss_pred HhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCC-----------CCHHHHHHHHHHC-CeEE
Confidence 999999888888765 4689999999999999999864 3677888876655 9876
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6e-48 Score=376.67 Aligned_cols=315 Identities=18% Similarity=0.295 Sum_probs=270.8
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
+|.|++|+|+|++|+.+.+++.+++.++.++|++..| .++|++|++++.+++|.++++++|++|+|+++++..++.+++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~ 79 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS 79 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc
Confidence 5899999999999999999999999888889988888 789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCC-CCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRIS-ENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
++||+|++++|+|+.|...++..|.+++.++.+.+ +++.+|++.+++.+. ++++++++++||||||.+++.+++++|+
T Consensus 80 ~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~ 159 (361)
T d1d2fa_ 80 ETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMA 159 (361)
T ss_dssp CTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHH
T ss_pred ccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhh
Confidence 99999999999999999999999999999987653 557799999999885 5889999999999999999999999999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC-HHHHHHH-HHHhhcc-
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP-KHFVAAC-NKIQSQF- 331 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~-~~~~~~l-~~~~~~~- 331 (429)
++|+++ +++||+||+|.++.|++....++.... .++++++.|+||.++++|+|+||++.+ +...... .......
T Consensus 160 ~~~~~~-~~~lI~De~y~~~~~~~~~~~~~~~~~--~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~ 236 (361)
T d1d2fa_ 160 DLCERH-GVRVISDEIHMDMVWGEQPHIPWSNVA--RGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDG 236 (361)
T ss_dssp HHHHHT-TCEEEEECTTTTCBCSSSCCCCGGGTC--CSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSC
T ss_pred hhhhhh-heeeeeccccccccccccccccccccc--ccccccccccccccccccccceeeecchhHHHHHHhhhcccccc
Confidence 999999 999999999999999877666666553 578999999999999999999998764 3333333 3333222
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc-CCCceeecCCceEEEEEecCCccCCcccCCCCC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE-LEGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKI 410 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-l~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 410 (429)
..+++...+.++..++.. ..++.++.+..++++++.+.+.+.+ ++++.+..|+||||+|++++.. +
T Consensus 237 ~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p~gg~~~~~~l~~~-~--------- 303 (361)
T d1d2fa_ 237 LSSPSVLALTAHIAAYQQ---GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPL-N--------- 303 (361)
T ss_dssp CCSCCHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSBCSEEEEECGGG-C---------
T ss_pred cccchhhhHHHHHHHhhc---cchhhhcccccchhhHHHHHHHhhhhcccccccccCceeEEEEEccCC-C---------
Confidence 233555666666666665 4778889999999999999888766 5688888999999999999642 1
Q ss_pred CChHHHHHHHHHhCCeec
Q 014172 411 ENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 411 ~~~~~~~~~Ll~~~gV~v 428 (429)
.++.+|+.+|++++||.|
T Consensus 304 ~~~~~~~~~Ll~~~gv~v 321 (361)
T d1d2fa_ 304 IDDNALQKALIEQEKVAI 321 (361)
T ss_dssp CCHHHHHHHHHHTTCEEC
T ss_pred CCHHHHHHHHHHhCCEEE
Confidence 389999999999999986
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.4e-48 Score=386.76 Aligned_cols=346 Identities=18% Similarity=0.302 Sum_probs=289.7
Q ss_pred ccccccCcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCC--hHHHHHHHHHHHHcC---CCCCCCCCCCHH
Q 014172 62 VQVDVSLSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDT--PVLIAEAGINAIREG---FTRYTPNAGTLE 136 (429)
Q Consensus 62 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~--p~~v~~a~~~~~~~~---~~~Y~~~~G~~~ 136 (429)
|+++..+|++++.+++|.++++.+.+ .++++|+|+.|.|+... .+.+.+++.+.+... ..+|++..|.++
T Consensus 1 ~~~~~~~~~~~~~~~~s~ire~~~~~-----~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~ 75 (403)
T d1wsta1 1 INFDSFFSEKAMLMKASEVRELLKLV-----ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTP 75 (403)
T ss_dssp CCGGGGCCHHHHHCCCHHHHHHHHHH-----TSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHH
T ss_pred CCHHHHHHHHHhcCCCcHHHHHHHHh-----CCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHH
Confidence 35677799999999999877765533 35679999999987653 356777777776542 467999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCC
Q 014172 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLL 216 (429)
Q Consensus 137 lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 216 (429)
||++||+|+++.+|..+++++|++|+|+++++..++.+++++||.|++++|+|..|...+..+|++++.++.+.++.+..
T Consensus 76 lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 155 (403)
T d1wsta1 76 LRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVD 155 (403)
T ss_dssp HHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHH
T ss_pred HHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875443222
Q ss_pred CHHHHHh----hcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCC
Q 014172 217 DPKVLES----KLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWE 292 (429)
Q Consensus 217 d~e~l~~----~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 292 (429)
....... ..++...++++++||||||.+++.+++++|+++|++| |++||+||+|.++.|++....++..... .+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~-~~~li~De~y~~l~~~~~~~~~~~~~~~-~~ 233 (403)
T d1wsta1 156 LLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEY-DFLIVEDGPYSELRYSGEPTPPIKHFDD-YG 233 (403)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEECTTTTCBCSSCCCCCGGGGCS-SS
T ss_pred cccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHHHhc-CceeccccchhheecCCCCCCcccccCC-CC
Confidence 2222211 1123455667899999999999999999999999999 9999999999999998877666665554 68
Q ss_pred ceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q 014172 293 RTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLV 372 (429)
Q Consensus 293 ~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~ 372 (429)
++++++||||.++ +|+|+||+++++++++.+.........+.+...|.+....+.... .+.++++.++.++++++.+.
T Consensus 234 ~~i~~~S~SK~~~-~G~RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 311 (403)
T d1wsta1 234 RVIYLGTFSKILA-PGFRIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKYVENGY-LDEHIPKIIEFYKPRRDAML 311 (403)
T ss_dssp CEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEccccceec-CcccccccccchHHHHHHHHHHhhhccccccchhhhHHhhhhccc-cchhHHHHHHHHHHHHHHHH
Confidence 9999999999996 999999999999999999888887888889999888887777533 26778899999999999999
Q ss_pred HHhccC--CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 373 KSFGEL--EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 373 ~~L~~l--~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.|.+. .|+.+..|+||||+|+++|.. .++..+++.|+++ ||.|
T Consensus 312 ~~L~~~~~~~~~~~~p~gg~~~~~~~~~~-----------~~~~~~~~~l~~~-gV~v 357 (403)
T d1wsta1 312 EALEEYMPEGVEWTKPEGGMFVRVTLPEG-----------IDTKLMMERAVAK-GVAY 357 (403)
T ss_dssp HHHHHHCCTTCEECCCSBSSEEEEECCTT-----------CCTTTTHHHHHHT-TEEC
T ss_pred HHHHhhccCCeEEeCCCceeEEEEECCCC-----------CCHHHHHHHHHHC-CEEE
Confidence 999874 468999999999999999864 3677788887765 9876
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=2.1e-47 Score=378.10 Aligned_cols=340 Identities=15% Similarity=0.147 Sum_probs=272.2
Q ss_pred ccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCC---CCCC--ChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHH
Q 014172 70 PRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGE---PDFD--TPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICH 143 (429)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~---~~~~--~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~ 143 (429)
..+..-++.++..+.+.++. ...+++|||+.|. ++.. .++.|.++..+.+.++. ++|+|..|.++||+++++
T Consensus 5 ~~~~~~p~d~i~~~~~~~~~--d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~ 82 (401)
T d7aata_ 5 SHVEMGPPDPILGVTEAFKR--DTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAE 82 (401)
T ss_dssp TTCCCCCCCHHHHHHHHHHH--CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHH
T ss_pred ccCCCCCCChHHHHHHHHhC--CCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHH
Confidence 44555566666665554442 2334689999994 4433 35888898888877654 479999999999999999
Q ss_pred HHHhhcCCCCCCCcEEEecCh-----HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 144 KLKEENGLSYTPDQILVSNGA-----KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 144 ~l~~~~g~~~~~~~i~~t~G~-----~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
++.+.++..+.+++|+++.|+ .+++..+++++++|||+|++++|+|+.|...++.+|++++.+|+.+++++.+++
T Consensus 83 ~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~ 162 (401)
T d7aata_ 83 LALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDF 162 (401)
T ss_dssp HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccH
Confidence 999888877778888776553 356777888899999999999999999999999999999999998888899999
Q ss_pred HHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcc--ccCCCCCCc
Q 014172 219 KVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF--ASLPGMWER 293 (429)
Q Consensus 219 e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~--~~~~~~~~~ 293 (429)
+.+.+.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....+. ..+....++
T Consensus 163 ~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T d7aata_ 163 TGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKR-NLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHHHHHHHHhcc-eEEEEEeccchhhhcCCcccchhhhhhhhhhhcc
Confidence 99887764 5788999999999999999999999999999999 99999999999999986432221 122233577
Q ss_pred eEEEeccChhcccccceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHH
Q 014172 294 TLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKA 363 (429)
Q Consensus 294 ~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~ 363 (429)
++++.|+||.++++|||+||++++.++++.+.+. ......+++.+.|.++...+.+... ..++++.++++
T Consensus 242 ~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T d7aata_ 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cceeEeccccceeeccccceeecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999987766654432 3445567889999999888875221 12456778889
Q ss_pred HHHHHHHHHHHhccCC---CceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 364 FRERRDFLVKSFGELE---GVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~---g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+++|+.+.+.|+++. .+.+.+|++|||+|+.++ .+++++|++++||++
T Consensus 322 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~e~~~~L~~e~gV~~ 373 (401)
T d7aata_ 322 IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLK----------------PEQVERLTKEFSIYM 373 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCcceECCCCeEEEecCCC----------------HHHHHHHHHhCCEEE
Confidence 9999999999999862 256678999999998653 478899999999976
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=8.1e-47 Score=377.01 Aligned_cols=323 Identities=20% Similarity=0.345 Sum_probs=262.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-----------cCCCCCCCCCCCHHHHHHHHHHHHhhcCC--CCCCCcEEEec
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-----------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVSN 162 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~-----------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~i~~t~ 162 (429)
.+|+|+.++|.+. ++.+.+.+.+... ....+|++..|.++||++||+|+++.+|. ++++++|++|+
T Consensus 37 G~i~l~~aen~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~ 115 (428)
T d1iaya_ 37 GVIQMGLAENQLC-LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG 115 (428)
T ss_dssp SBEECSSCCCCSS-HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred ceEEeecccCccc-hHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcC
Confidence 4899999998753 4445444433111 01247999999999999999999999885 46789999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCCCCHHHHHhhc------ccCCcEEEEc
Q 014172 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKL------TEKSRLLILC 235 (429)
Q Consensus 163 G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~e~l~~~l------~~~~~~i~l~ 235 (429)
|+++++..++++++++||.|++++|+|+.|...+.. .|++++.++++.+++|.+|++.++.++ .+++++++++
T Consensus 116 G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 195 (428)
T d1iaya_ 116 GATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILT 195 (428)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEc
Confidence 999999999999999999999999999999987775 589999999988889999999887654 3478899999
Q ss_pred CCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC-------CCCCceEEEeccChhccccc
Q 014172 236 SPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP-------GMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 236 ~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~-------~~~~~~i~~~S~SK~~~~~G 308 (429)
+||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++.++. ...+++++++||||.|+++|
T Consensus 196 nP~NPtG~~~s~~~~~~i~~~a~~~-~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G 274 (428)
T d1iaya_ 196 NPSNPLGTTLDKDTLKSVLSFTNQH-NIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG 274 (428)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHTT-TCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG
T ss_pred cCCCcccccccccccchhheeeccC-cEEEEecccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCC
Confidence 9999999999999999999999999 999999999999999887766665432 23578999999999999999
Q ss_pred ceeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC
Q 014172 309 WRLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ 387 (429)
Q Consensus 309 ~R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~ 387 (429)
+|+||++++ +.+++.+...... ...+...|.++.+.+......++++++.++.++++++.+.+.|+.. |+++.+|+
T Consensus 275 lRiG~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-gi~~~~p~ 351 (428)
T d1iaya_ 275 FRVGIIYSFNDDVVNCARKMSSF--GLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKNN 351 (428)
T ss_dssp GCEEEEEESCHHHHHHHHHHHTT--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCCS
T ss_pred cccccccccccchhhhhhhhhcc--cccccccccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-CCEEecCC
Confidence 999999985 5566666554433 2456777777666665411124567888899999999999999886 99999999
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
||||+|++++..... ....++.+++++|++++||.+
T Consensus 352 gg~f~w~~l~~~~~~-----~~~~~~~~l~~~Ll~~~gV~v 387 (428)
T d1iaya_ 352 AGLFCWMDLRPLLRE-----STFDSEMSLWRVIINDVKLNV 387 (428)
T ss_dssp SSSEEEEECGGGCSS-----SSHHHHHHHHHHHHHTSCEEC
T ss_pred cceEEEEECcccccc-----CCCCCHHHHHHHHHHhCCEEE
Confidence 999999999864221 111246689999999999986
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=3.7e-47 Score=379.78 Aligned_cols=324 Identities=19% Similarity=0.345 Sum_probs=265.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH------------cCCCCCCCCCCCHHHHHHHHHHHHhhcCC--CCCCCcEEEe
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIR------------EGFTRYTPNAGTLELRSAICHKLKEENGL--SYTPDQILVS 161 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~------------~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~--~~~~~~i~~t 161 (429)
.+|+|+.++|.+. .+.+.+.+.+... .+..+|++..|.++||++||+++++.+|. ++++++|++|
T Consensus 37 G~i~l~~~en~l~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it 115 (431)
T d1m7ya_ 37 GIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLT 115 (431)
T ss_dssp SBEECSSCCCCSC-HHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEE
T ss_pred cEEEeeccccccc-HHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEEC
Confidence 3899999999874 3444444432100 01246999999999999999999999874 5678999999
Q ss_pred cChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH-cCCEEEEecCCCCCCCCCCHHHHHhhccc------CCcEEEE
Q 014172 162 NGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPTRISENFLLDPKVLESKLTE------KSRLLIL 234 (429)
Q Consensus 162 ~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------~~~~i~l 234 (429)
+|+++++..+++++++|||+|++++|+|+.+...++. .|++++.++++.+++|.+|++.+++.+.+ +++++++
T Consensus 116 ~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 195 (431)
T d1m7ya_ 116 AGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLV 195 (431)
T ss_dssp EHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEe
Confidence 9999999999999999999999999999999988874 68999999999888899999999887742 6789999
Q ss_pred cCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCC---------CCCCceEEEeccChhcc
Q 014172 235 CSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLP---------GMWERTLTVNGFSKAFA 305 (429)
Q Consensus 235 ~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~---------~~~~~~i~~~S~SK~~~ 305 (429)
++||||||.+++.+++++|+++|++| +++||+||+|.++.|++..+.++.++. ...+++++++||||.||
T Consensus 196 ~nP~NPtG~~~s~~~l~~i~~~a~~~-~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~ 274 (431)
T d1m7ya_ 196 TNPSNPLGTTMTRNELYLLLSFVEDK-GIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLG 274 (431)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSC
T ss_pred cCcccccccccccccccccccccccc-CcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCccccc
Confidence 99999999999999999999999999 999999999999999876666554432 23468999999999999
Q ss_pred cccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec
Q 014172 306 MTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE 385 (429)
Q Consensus 306 ~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~ 385 (429)
++|+|+||++++++++.......... .+.+...|.++.+.+.......+++.+.++.++++++.+.+.|++. |+++.+
T Consensus 275 ~~G~RiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~ 352 (431)
T d1m7ya_ 275 LPGFRVGAIYSNDDMVVAAATKMSSF-GLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLN 352 (431)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHGGG-SCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECC
T ss_pred CCCCccceeccchhhhHHHHHHHhcc-ccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEec
Confidence 99999999999988776655544433 3456666666666665421124678889999999999999999986 999999
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
|+||||+|++++..... ....++.+|+++|++++||.+
T Consensus 353 p~gg~f~w~~l~~~~~~-----~~~~~~~~l~~~ll~~~gV~v 390 (431)
T d1m7ya_ 353 GNAGLFCWVDMRHLLRS-----NTFEAEMELWKKIVYEVHLNI 390 (431)
T ss_dssp CCSSSEEEEECGGGSSS-----SSHHHHHHHHHHHHHTSCEEC
T ss_pred CCceeEEEEECcccccc-----CcccCHHHHHHHHHHHCCEEE
Confidence 99999999999865321 111356789999999999986
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=5.4e-45 Score=361.92 Aligned_cols=342 Identities=16% Similarity=0.153 Sum_probs=264.8
Q ss_pred cCcccccccCCchhHHHHHHHHHHHhcC-CCeEEcCCC---CCCCCC--hHHHHHHHHHHHHc--CCCCCCCCCCCHHHH
Q 014172 67 SLSPRVNAVKPSKTVAITDQATALAQAG-VSVIRLAAG---EPDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELR 138 (429)
Q Consensus 67 ~~s~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~L~~g---~~~~~~--p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr 138 (429)
++..++...++.++..+.+ +.++.. ++.|||++| +++..+ ++.|.++......+ ..++|+|..|.++||
T Consensus 3 ~~~~~~~~~~~d~i~~~~~---~~~~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr 79 (412)
T d1yaaa_ 3 TLFNNIELLPPDALFGIKQ---RYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLT 79 (412)
T ss_dssp TTTTTCCCCCCCTTHHHHH---HHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHH
T ss_pred ChhhcCCcCCCChHHHHHH---HHhcCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHH
Confidence 3566788888887665544 444443 357999999 455444 47777775544332 346799999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcEEE--ecChHHHHHHH--HHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCC
Q 014172 139 SAICHKLKEENGLSYTPDQILV--SNGAKQSILQA--VLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENF 214 (429)
Q Consensus 139 ~~ia~~l~~~~g~~~~~~~i~~--t~G~~~al~~~--l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 214 (429)
+++++++.+.++..+.++.+++ +.|+..++..+ +..++.+||+|++++|+|+.|...++..|++++.+|+..++++
T Consensus 80 ~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~ 159 (412)
T d1yaaa_ 80 SNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK 159 (412)
T ss_dssp HHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTT
T ss_pred HHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceecccccccccc
Confidence 9999999887775545554443 34455554444 3445789999999999999999999999999999999888888
Q ss_pred CCCHHHHHhhcc---cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcc-----cc
Q 014172 215 LLDPKVLESKLT---EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF-----AS 286 (429)
Q Consensus 215 ~~d~e~l~~~l~---~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~-----~~ 286 (429)
.++.+.+++.+. ++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....+. ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~ 238 (412)
T d1yaaa_ 160 SLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASK-NHIALFDTAYQGFATGDLDKDAYAVRLGVE 238 (412)
T ss_dssp EECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHT-TCEEEEEESCTTTSSSCHHHHTHHHHHHHH
T ss_pred cccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccC-CEEEeecceeeecccCCcccchhhhhhhhh
Confidence 899998888774 4566888999999999999999999999999999 99999999999999986433222 12
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEEcCHHHHH-----------HHHHHhhcccCCCchHHHHHHHHHHhcCCC---
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA-----------ACNKIQSQFTSGASSISQKAGVAALGLGYA--- 352 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~-----------~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~--- 352 (429)
.....++++++.||||.++++|||+||++++.++++ .+.........+++.++|.++..++.+...
T Consensus 239 ~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~ 318 (412)
T d1yaaa_ 239 KLSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQ 318 (412)
T ss_dssp HTTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHH
T ss_pred ccccCCCeEEEEecCCccccCcCceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHH
Confidence 234468899999999999999999999998754322 222334456778999999999998886221
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhccC--CC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 353 GGEVVSKMVKAFRERRDFLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 353 ~~~~~~~~~~~~~~~r~~l~~~L~~l--~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..++++.+++.|+++|+.+.+.|+++ ++ +.+..|++|||+|+.++ .+++++|++++||++
T Consensus 319 ~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~~~~~~~gG~F~~~~ls----------------~e~~~~L~~e~~V~~ 381 (412)
T d1yaaa_ 319 WHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT----------------PQMVKRLEETHAVYL 381 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCceeCCCceEEEecCcC----------------HHHHHHHHHhCCEEE
Confidence 13557788999999999999999886 22 66778999999997653 478999999999975
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-45 Score=362.62 Aligned_cols=318 Identities=19% Similarity=0.139 Sum_probs=255.0
Q ss_pred CCCeEEcCCC---CCCCCC--hHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHH
Q 014172 94 GVSVIRLAAG---EPDFDT--PVLIAEAGINAIRE--GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQ 166 (429)
Q Consensus 94 g~~~i~L~~g---~~~~~~--p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~ 166 (429)
.++.|||++| +++..+ ++.|.+|....... ..+.|+|..|.++||+++++++.+.++..+++++|+++.|+++
T Consensus 25 ~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~ 104 (397)
T d3tata_ 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGG 104 (397)
T ss_dssp CSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHH
T ss_pred CCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchh
Confidence 3467999999 344333 47788876654332 3467999999999999999999988888788899988877665
Q ss_pred H----HHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc---cCCcEEEEcCCCC
Q 014172 167 S----ILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSN 239 (429)
Q Consensus 167 a----l~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~---~~~~~i~l~~p~N 239 (429)
+ +.+++..+++|||+|++++|+|+.|...++..|++++.+|+..++++.+|.+.+.+.+. ++++++++++|||
T Consensus 105 ~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~N 184 (397)
T d3tata_ 105 SGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHN 184 (397)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCS
T ss_pred HHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCC
Confidence 4 55666677899999999999999999999999999999999988888899888877654 5778889999999
Q ss_pred CccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCC-ccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 240 PTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHT-SFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 240 PtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
|||.+++.+++++|+++|++| +++||+||+|.++.|++.... +........++++++.||||.++++|||+||++++.
T Consensus 185 PTG~~~s~~~~~~l~~~a~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~ 263 (397)
T d3tata_ 185 PTGADLTNDQWDAVIEILKAR-ELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMC 263 (397)
T ss_dssp SSCCCCCHHHHHHHHHHHHHT-TCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEEC
T ss_pred CCCeeCCHHHHHHHHHHHhhc-CeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccch
Confidence 999999999999999999999 999999999999999754322 222233346789999999999999999999999865
Q ss_pred HHHHHHH-------HHhhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHHHHHHhccC-CC--ceeec
Q 014172 319 HFVAACN-------KIQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRERRDFLVKSFGEL-EG--VKMSE 385 (429)
Q Consensus 319 ~~~~~l~-------~~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~~~~~r~~l~~~L~~l-~g--~~~~~ 385 (429)
.+++... ........+++...|.++...+..... ..++++.++++++++|+.+.+.|..+ ++ +.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~ 343 (397)
T d3tata_ 264 EDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLL 343 (397)
T ss_dssp SSTTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEc
Confidence 4443332 334455667889999888888865211 12446677888899999999999885 22 66778
Q ss_pred CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 386 PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 386 p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++|||+|+.++ .+++++|++++||++
T Consensus 344 ~~~G~F~~~~ls----------------~e~~~~L~~e~~V~l 370 (397)
T d3tata_ 344 NQRGMFSYTGLS----------------AAQVDRLREEFGVYL 370 (397)
T ss_dssp HCCSSBCCCCCC----------------HHHHHHHTTTTCEEC
T ss_pred CCCceEEecCcC----------------HHHHHHHHHhCCEEe
Confidence 999999998763 468999999999975
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=5.3e-44 Score=345.00 Aligned_cols=301 Identities=22% Similarity=0.314 Sum_probs=249.6
Q ss_pred HHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEec
Q 014172 83 ITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSN 162 (429)
Q Consensus 83 ~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~ 162 (429)
+.++++.++..++++|+|+.|+|++++|+.+.+++.+.+..+.++|.|..|.++||++||+++++. + +++++|++|+
T Consensus 7 ~~~~~~~~~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~--v~~d~I~it~ 83 (334)
T d2f8ja1 7 IAKRAYPYETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-F--LSKNNVSVGN 83 (334)
T ss_dssp HHHHSCCCCCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-S--CCGGGEEEEE
T ss_pred HHHhcccccccCCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-C--CCcceEEecC
Confidence 344455555667899999999999999999999999988766666778899999999999999653 3 6789999999
Q ss_pred ChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCcc
Q 014172 163 GAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTG 242 (429)
Q Consensus 163 G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG 242 (429)
|++++|+++++ +||+|++++|+|..|...++.+|++++.+|++++.. .+ +...++++++++++||||||
T Consensus 84 G~~~~l~~l~~----~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~--~~-----~~~~~~~~~l~l~nP~NPtG 152 (334)
T d2f8ja1 84 GADEIIYVMML----MFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLR--IP-----EVNVGEGDVVFIPNPNNPTG 152 (334)
T ss_dssp HHHHHHHHHHH----HSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSC--CC-----CCCCCTTEEEEEESSCTTTC
T ss_pred cchhHHHHHhh----hccccccccccccccccchhccCCcccccccccccc--cc-----ccccccceEEEecccccccc
Confidence 99999887655 469999999999999999999999999999875432 11 23446789999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVA 322 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~ 322 (429)
.+++.+++++ + .++ ++++|+||+|.++.+..... .....+++++++||||.++++|+|+||+++++++++
T Consensus 153 ~~~s~~~l~~---~-~~~-~~~ii~Dd~~~~~~~~~~~~-----~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~ 222 (334)
T d2f8ja1 153 HVFEREEIER---I-LKT-GAFVALDEAYYEFHGESYVD-----FLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFID 222 (334)
T ss_dssp CCCCHHHHHH---H-HTT-TCEEEEECTTGGGTCCCCGG-----GGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHH
T ss_pred eeecHHHhhc---c-ccc-eeEEeecccchhhccccccc-----ccccCceEEEEecCccccchhhhhhhhcccchHHHH
Confidence 9999666544 3 456 79999999998765433211 112358999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCC
Q 014172 323 ACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS 402 (429)
Q Consensus 323 ~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~ 402 (429)
.+...+.. .+.+.++|.++.+++.. .+++++.++.|+++|+.+.+.|+++ |+++.+|+|+ |+|+.++..
T Consensus 223 ~l~~~~~~--~~~s~~~~~~a~~~l~~----~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~g~-f~~~~~~~~--- 291 (334)
T d2f8ja1 223 AYNRVRLP--FNVSYVSQMFAKVALDH----REIFEERTKFIVEERERMKSALREM-GYRITDSRGN-FVFVFMEKE--- 291 (334)
T ss_dssp HHHHHSCT--TCSCHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHHHHHHHHHH-TCEECCCCSS-EEEEECCHH---
T ss_pred HHHHhhcc--cccchhhhhhccccccc----ccchhhHHHHHHHHHHHHHHHHHHC-CCeECCCCce-EEEEECCCC---
Confidence 99887654 45788999999888875 7899999999999999999999999 8999888877 589988753
Q ss_pred cccCCCCCCChHHHHHHHHHhCCeec
Q 014172 403 EAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 403 ~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.++++.|+++ ||.|
T Consensus 292 ---------~~~~~~~~L~~~-GI~v 307 (334)
T d2f8ja1 292 ---------EKERLLEHLRTK-NVAV 307 (334)
T ss_dssp ---------HHHHHHHHHHHT-TEEC
T ss_pred ---------CHHHHHHHHHHC-CCEE
Confidence 678899988765 9976
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.2e-45 Score=359.24 Aligned_cols=341 Identities=15% Similarity=0.130 Sum_probs=256.0
Q ss_pred cccccccCCchhHHHHHHHHHHHhcCCCeEEcCCC---CCC--CCChHHHHHHHHHHHHcC-CCCCCCCCCCHHHHHHHH
Q 014172 69 SPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAG---EPD--FDTPVLIAEAGINAIREG-FTRYTPNAGTLELRSAIC 142 (429)
Q Consensus 69 s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g---~~~--~~~p~~v~~a~~~~~~~~-~~~Y~~~~G~~~lr~~ia 142 (429)
.+++...++.++..+.+.+++ ...++.|||++| +++ .++++.|.+++.+..+++ .++|+|..|.++||++++
T Consensus 2 f~~~~~~p~d~i~~~~~~~~~--d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia 79 (396)
T d2q7wa1 2 FENITAAPADPILGLADLFRA--DERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQ 79 (396)
T ss_dssp CTTCCCCCC-------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHH
T ss_pred ccccccCCCChHHHHHHHHhc--cCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHH
Confidence 345666677666666555543 223457999999 343 334588999988887665 457999999999999999
Q ss_pred HHHHhhcCCCCCCCcE--EEecChHHHHHHHH--HHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCH
Q 014172 143 HKLKEENGLSYTPDQI--LVSNGAKQSILQAV--LAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDP 218 (429)
Q Consensus 143 ~~l~~~~g~~~~~~~i--~~t~G~~~al~~~l--~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 218 (429)
+++.+.++..+.++.+ ++|.|++.++.+++ ...+++||.|++++|+|+.|...++.+|++++.+++..++++..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (396)
T d2q7wa1 80 ELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDF 159 (396)
T ss_dssp HHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECH
T ss_pred HHHHhhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEeccccccccccccc
Confidence 9999888766555543 45667666665444 4447899999999999999999999999999999998888877787
Q ss_pred HHHHhhc---ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCcc-ccCCCCCCce
Q 014172 219 KVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSF-ASLPGMWERT 294 (429)
Q Consensus 219 e~l~~~l---~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~-~~~~~~~~~~ 294 (429)
+.+++.. .++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....+. .......+++
T Consensus 160 ~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~ 238 (396)
T d2q7wa1 160 DALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEK-GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKEL 238 (396)
T ss_dssp HHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCE
T ss_pred chHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcC-CeEEEEeccccccccCCccCchHhhhhhhhcccc
Confidence 7776654 45678888999999999999999999999999999 99999999999999976433322 2223335788
Q ss_pred EEEeccChhcccccceeeEEEcCHHHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHHH
Q 014172 295 LTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAF 364 (429)
Q Consensus 295 i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~~ 364 (429)
+++.|+||.++++|||+||++++...++.+... ......+++...|.++..++..... .+++++.++++|
T Consensus 239 ~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (396)
T d2q7wa1 239 IVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRI 318 (396)
T ss_dssp EEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHH
T ss_pred cccccccccccccCCCccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999987666555433 2345567888889888887764211 135677888999
Q ss_pred HHHHHHHHHHhccCC-C--ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 365 RERRDFLVKSFGELE-G--VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 365 ~~~r~~l~~~L~~l~-g--~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++|+.+.+.|+++. . +.+..+++|||+|+.++ .+++++|++++||++
T Consensus 319 ~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~~l~----------------~e~~~~L~~e~gV~~ 369 (396)
T d2q7wa1 319 QRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT----------------KEQVLRLREEFGVYA 369 (396)
T ss_dssp HHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHHhCCCCCcceecCCCeEEEeeCCC----------------HHHHHHHHHhCCEEE
Confidence 999999999999861 1 55668889999998663 377999999999974
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=3.1e-43 Score=342.36 Aligned_cols=307 Identities=22% Similarity=0.303 Sum_probs=255.4
Q ss_pred HHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 86 QATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 86 ~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
.+++....+.++|||+.|+|++++|+.+++++.+.+.. ..+| |+.|..+||++||++++ +++++|++|+|++
T Consensus 13 ~~~~~g~~p~~~idls~~~np~~~p~~~~~a~~~~~~~-~~~Y-p~~~~~~Lr~aia~~~~------v~~~~I~~~~g~~ 84 (355)
T d1lc5a_ 13 PATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDC-IERY-PDADYFHLHQALARHHQ------VPASWILAGNGET 84 (355)
T ss_dssp HHHHHTSCGGGSEECSSCCCTTCCCHHHHHHHHHTGGG-GGSC-CCTTCHHHHHHHHHHHT------SCGGGEEEESSHH
T ss_pred HHHHhCCChhheEEccCCCCCCCCCHHHHHHHHHHHHH-hccC-CCCChHHHHHHHHHHhC------CCHHHEEecccHH
Confidence 34444434446899999999999999999999987653 5668 67788999999999974 6789999999999
Q ss_pred HHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 166 QSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 166 ~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
+++..++..+. |+.+++..|.|..|.......+++++.+++..+++|.++ +.+.+.+.+++++|++++||||||.++
T Consensus 85 ~~~~~~~~~~~--~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~v~l~nP~NPtG~~~ 161 (355)
T d1lc5a_ 85 ESIFTVASGLK--PRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLLP 161 (355)
T ss_dssp HHHHHHHHHHC--CSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCC-TTHHHHCCTTCCEEEEESSCTTTCCCC
T ss_pred HHHHHHHhhhc--cccccccCCccceeccccccccccceeeeeeccCCccce-eeeeeccccccceeeeecccCcccccc
Confidence 99997776653 556667789999999999999999999999888777766 556677888999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH-HHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH-FVAAC 324 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~-~~~~l 324 (429)
+.+++++|+++|++| ++++|+||+|.++.+.+.... ......+++++++||||.||++|+|+||++++++ +.+.+
T Consensus 162 ~~e~l~~i~~~a~~~-~~~li~De~y~~~~~~~~~~~---~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~ 237 (355)
T d1lc5a_ 162 ERPLLQAIADRCKSL-NINLILDEAFIDFIPHETGFI---PALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARM 237 (355)
T ss_dssp CHHHHHHHHHHHHHH-TCEEEEECTTGGGSTTCCCSG---GGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHH
T ss_pred hhhhhhhhhhhcccc-ccccccccceeeeeeeccccc---ccccccccceeecccccccccccccccceeccchhhhHHH
Confidence 999999999999999 999999999999876654322 2233468999999999999999999999999865 44555
Q ss_pred HHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcc
Q 014172 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~ 404 (429)
.+... ..+.+.++|.++.+++++ .+++.+.++.++++++++.+.|.+++|+++. |.+|+|+|++++.
T Consensus 238 ~~~~~--~~~~~~~~~~~a~~~l~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-p~~~~f~~~~~~~------ 304 (355)
T d1lc5a_ 238 RRQQM--PWSVNALAALAGEVALQD----SAWQQATWHWLREEGARFYQALCQLPLLTVY-PGRANYLLLRCER------ 304 (355)
T ss_dssp HHHSC--TTCSCHHHHHHHHHGGGC----HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC-CCSSSEEEEEESC------
T ss_pred HhhcC--Cccccccccccccccccc----cchhHHHHHHHHHHHHHHHHHHhhcCCcEEC-CCCCEEEEEECCC------
Confidence 54433 346789999999999985 7889999999999999999999999888764 7778899999974
Q ss_pred cCCCCCCChHHHHHHHHHhCCeec
Q 014172 405 EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++.+++++|+++ ||.|
T Consensus 305 -------~~~~~~~~L~~~-gv~v 320 (355)
T d1lc5a_ 305 -------EDIDLQRRLLTQ-RILI 320 (355)
T ss_dssp -------TTCCHHHHHHTT-TEEC
T ss_pred -------CHHHHHHHHHHC-CcEE
Confidence 566899888766 8886
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=9.5e-44 Score=352.97 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=257.1
Q ss_pred CcccccccCCchhHHHHHHHHHHHhc-CCCeEEcCCC---CCCCC--ChHHHHHHHHHHHHc--CCCCCCCCCCCHHHHH
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQA-GVSVIRLAAG---EPDFD--TPVLIAEAGINAIRE--GFTRYTPNAGTLELRS 139 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~L~~g---~~~~~--~p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lr~ 139 (429)
+..++...++..+..+ +.+.++. .+++|||++| +++.. .++.|.++......+ ..++|+|..|.++||+
T Consensus 5 ~~~~~~~~~~~~i~~l---~~~~~~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lre 81 (412)
T d1ajsa_ 5 VFAEVPQAQPVLVFKL---IADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRT 81 (412)
T ss_dssp TTTTCCCCCCCHHHHH---HHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHH
T ss_pred hhhhCCcCCCChHHHH---HHHHhcCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHH
Confidence 4445666666655444 4444443 3568999999 34433 347777776655443 2457999999999999
Q ss_pred HHHHHHHhhcCCCCCCCcE--EEecChHHHHHHHHHH-------hcCCCCEEEEcCCCCCChHHHHHHcCCEEEEec-CC
Q 014172 140 AICHKLKEENGLSYTPDQI--LVSNGAKQSILQAVLA-------VCSPGDEVIIPAPFWVSYPEMARIADATPVILP-TR 209 (429)
Q Consensus 140 ~ia~~l~~~~g~~~~~~~i--~~t~G~~~al~~~l~~-------l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~-~~ 209 (429)
++++++.+.++..+.++++ +.|.|++.++..+..+ +++|||+|++++|+|+.|...++.+|++++.++ ..
T Consensus 82 aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~ 161 (412)
T d1ajsa_ 82 CASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW 161 (412)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred HHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccc
Confidence 9999998888766666654 4555665555544433 479999999999999999999999999876554 44
Q ss_pred CCCCCCCCHHHHHhhc---ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCc--c
Q 014172 210 ISENFLLDPKVLESKL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTS--F 284 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l---~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~--~ 284 (429)
.++++.+|.+.+++.+ .++++++++|+||||||.+++.+++++|+++|++| |++||+||+|.++.|++..... .
T Consensus 162 ~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~ 240 (412)
T d1ajsa_ 162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRR-FLFPFFDSAYQGFASGNLEKDAWAI 240 (412)
T ss_dssp ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEESCTTTTTSCHHHHTHHH
T ss_pred ccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhC-CEEEEecHhhhhhhcCCcccchhhh
Confidence 5566778988877664 46788889999999999999999999999999999 9999999999999998643222 2
Q ss_pred ccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH-------HHhhcccCCCchHHHHHHHHHHhcCCC---Ch
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN-------KIQSQFTSGASSISQKAGVAALGLGYA---GG 354 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~-------~~~~~~~~~~~~~~q~aa~~~l~~~~~---~~ 354 (429)
.......++++++.|+||.++++|||+||++++...++.+. ........+++.+.|.++..++.+... ..
T Consensus 241 ~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (412)
T d1ajsa_ 241 RYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWT 320 (412)
T ss_dssp HHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHH
T ss_pred hhhhhhcccccccccccccccCCCCCccccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHH
Confidence 22233357889999999999999999999998765444433 333445667889999988888764211 13
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCC--C-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 355 EVVSKMVKAFRERRDFLVKSFGELE--G-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 355 ~~~~~~~~~~~~~r~~l~~~L~~l~--g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++++.++++|+++|+.+.+.|+++. + +.+..+++|||+|+.+ +.+++++|++++||++
T Consensus 321 ~~~~~~~~~l~~~r~~l~~~L~~~~~~~~~~~i~~~~G~F~~~~l----------------s~~~v~~L~~e~gV~~ 381 (412)
T d1ajsa_ 321 GNVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGL----------------NPKQVEYLINQKHIYL 381 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCC----------------CHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeecCCCeEEEecCC----------------CHHHHHHHHHhCCEEE
Confidence 4577788999999999999999862 2 5566889999999755 3477889999999975
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-43 Score=340.32 Aligned_cols=311 Identities=22% Similarity=0.356 Sum_probs=251.3
Q ss_pred CcccccccCCchhHHHHHHHHHHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHh
Q 014172 68 LSPRVNAVKPSKTVAITDQATALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKE 147 (429)
Q Consensus 68 ~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~ 147 (429)
..+.+++++|+...+ + ..+.+.|.|+.|++++++++.+.+ +...+| |..+..+||++||++++
T Consensus 8 ~~~~i~~~~~y~~~~------~--~~~~~~i~L~~ne~p~~~~~~~~~-------~~l~rY-Pd~~~~~Lr~~ia~~~g- 70 (354)
T d1fg7a_ 8 ARENVRNLTPYQSAR------R--LGGNGDVWLNANEYPTAVEFQLTQ-------QTLNRY-PECQPKAVIENYAQYAG- 70 (354)
T ss_dssp SCHHHHHCCCCCCCC------C--CTTTCSEECSSCCCSSCCCCCCCC-------CCTTSC-CCSSCHHHHHHHHHHHT-
T ss_pred hChhhccCCCCCchh------h--cCCCCCEEeeCCCCCCCCCHHHHH-------HHHhcC-CCCcHHHHHHHHHHHhC-
Confidence 345566676664321 1 123468999999988887654332 235678 77788999999999974
Q ss_pred hcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC-EEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 148 ENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD-EVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 148 ~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd-~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
+++++|++|+|++++|.++++++++||| .|+++.|+|..|...++..|.+++.++.. ++|.+|++.++..+.
T Consensus 71 -----v~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~--~~~~~d~~~l~~~~~ 143 (354)
T d1fg7a_ 71 -----VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD 143 (354)
T ss_dssp -----SCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT
T ss_pred -----CChHHeeeccCchHHHHHHHHHhhccccccccccccccccchhhhhccCceeeccccc--cccccchhhhhhccc
Confidence 6899999999999999999999999998 58899999999999999999999999875 568899999998874
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccc
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAM 306 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 306 (429)
++++|++++||||||.+++.++++.+.+.+++ +.++|+||+|.++.++... .......+++++++||||.||+
T Consensus 144 -~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~--~~~~iidd~~~~f~~~~~~----~~~~~~~~~~iv~~S~SK~~~l 216 (354)
T d1fg7a_ 144 -GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG--KAIVVADEAYIEFCPQASL----AGWLAEYPHLAILRTLSKAFAL 216 (354)
T ss_dssp -TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT--TCEEEEECTTGGGSGGGCS----GGGTTTCTTEEEEEESSSTTCC
T ss_pred -ccceeeccCCCccceeEeeecccccccccccc--cccccccccchhhcccccc----chhhcccccceEEeCCccccCC
Confidence 79999999999999999999999999888865 4677778898887654322 2223347899999999999999
Q ss_pred ccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC
Q 014172 307 TGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP 386 (429)
Q Consensus 307 ~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p 386 (429)
+|+|+||+++++++++.+.+....+ +.+.+.|.++..++... ...+.....+.+.++|+.+.+.+.+++++....|
T Consensus 217 aGlRiGy~i~~~~~i~~l~~~~~~~--~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p 292 (354)
T d1fg7a_ 217 AGLRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQ--GIVAMRERVAQIIAEREYLIAALKEIPCVEQVFD 292 (354)
T ss_dssp GGGCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECC
T ss_pred CccccccccccchhhhhhhhhcCcc--chhhHHHHHHHHHHhhh--ccccccccchhhhhHHHHHHHHHHhCCCcceeCC
Confidence 9999999999999999998876654 45677777776666541 1345667778889999999999999977777778
Q ss_pred CceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 387 QGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 387 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++|+|++++ ++.+++++|+++ ||.|
T Consensus 293 ~~~~f~~~~~~--------------~~~~~~~~L~~~-gIlv 319 (354)
T d1fg7a_ 293 SETNYILARFK--------------ASSAVFKSLWDQ-GIIL 319 (354)
T ss_dssp CSSSEEEEEET--------------THHHHHHHHHHT-TEEC
T ss_pred CCceEEEEeCC--------------CHHHHHHHHHHC-CcEE
Confidence 99999999986 577899998876 8876
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.3e-43 Score=350.00 Aligned_cols=337 Identities=15% Similarity=0.114 Sum_probs=256.1
Q ss_pred ccccCCchhHHHHHHHHHHHhc-CCCeEEcCCCC---CCC--CChHHHHHHHHHHHHcCC-CCCCCCCCCHHHHHHHHHH
Q 014172 72 VNAVKPSKTVAITDQATALAQA-GVSVIRLAAGE---PDF--DTPVLIAEAGINAIREGF-TRYTPNAGTLELRSAICHK 144 (429)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~-g~~~i~L~~g~---~~~--~~p~~v~~a~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~ 144 (429)
++..++.++..+ +.+.++. .++.|||++|. ++. ++++.|.+++.+.++++. ++|+|..|.++||++++++
T Consensus 5 ~~~~~~d~i~~l---~~~~~~d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~ 81 (394)
T d2ay1a_ 5 LKPQAPDKILAL---MGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGEL 81 (394)
T ss_dssp CCCCCCCSHHHH---HHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCChHHHH---HHHHhCCCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH
Confidence 333344444444 4444433 34689999994 332 335889999988876643 5799999999999999999
Q ss_pred HHhhcCCCCCCCcEEEecC-hHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHh
Q 014172 145 LKEENGLSYTPDQILVSNG-AKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLES 223 (429)
Q Consensus 145 l~~~~g~~~~~~~i~~t~G-~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 223 (429)
+.+.++.....+.+++++| +..++.+.+..++++||.|++++|+|+.|...++.+|++++.+++..++++..+.+.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~ 161 (394)
T d2ay1a_ 82 ILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKA 161 (394)
T ss_dssp HHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHH
T ss_pred HhccccccccccceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHH
Confidence 9887775444444444444 344466666777899999999999999999999999999999999877777777777666
Q ss_pred hc---ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccC-CCCCCceEEEec
Q 014172 224 KL---TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASL-PGMWERTLTVNG 299 (429)
Q Consensus 224 ~l---~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~i~~~S 299 (429)
.. .++++++++++||||||.+++.+++++|+++|++| +++||+||+|.++.|++....+.... .....+++++.|
T Consensus 162 ~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~-~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s 240 (394)
T d2ay1a_ 162 DLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKT-GALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAAS 240 (394)
T ss_dssp HHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHH-TCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred HHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcc-eEEEEEeccchhhcccccccchhhhhhhhhccccccccc
Confidence 54 44667777899999999999999999999999999 99999999999999976433332221 112467899999
Q ss_pred cChhcccccceeeEEEcCHHHHHHHHH-------HhhcccCCCchHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHH
Q 014172 300 FSKAFAMTGWRLGYIAGPKHFVAACNK-------IQSQFTSGASSISQKAGVAALGLGYA---GGEVVSKMVKAFRERRD 369 (429)
Q Consensus 300 ~SK~~~~~G~R~G~v~~~~~~~~~l~~-------~~~~~~~~~~~~~q~aa~~~l~~~~~---~~~~~~~~~~~~~~~r~ 369 (429)
+||.++++|||+||++++...++...+ .......+++...|.++...+.+... ..++++.++++|+++|+
T Consensus 241 ~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~ 320 (394)
T d2ay1a_ 241 CSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLRE 320 (394)
T ss_dssp CTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987665554433 23344567788888887777764221 13456778899999999
Q ss_pred HHHHHhccC--CC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 370 FLVKSFGEL--EG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 370 ~l~~~L~~l--~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.+.|+++ ++ +.+..|++|||+|+.++ .+++++|++++||++
T Consensus 321 ~l~~~L~~~~~~~~~~~~~~~~G~F~~~~ls----------------~~~~~~L~~~~~V~~ 366 (394)
T d2ay1a_ 321 QLAGELRDLSGSDRFGFVAEHRGMFSRLGAT----------------PEQVKRIKEEFGIYM 366 (394)
T ss_dssp HHHHHHHHHHTSSTTTHHHHCCSSEEECCCC----------------HHHHHHHHHHHCEEC
T ss_pred HHHHHHHHhCCCCceeeECCCceeEEecCcC----------------HHHHHHHHHhCCEEe
Confidence 999999885 22 67778999999998663 478899999999975
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=100.00 E-value=2.7e-35 Score=290.69 Aligned_cols=293 Identities=16% Similarity=0.177 Sum_probs=226.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHH-cCCCC--CCCCCC----CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIR-EGFTR--YTPNAG----TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~-~~~~~--Y~~~~G----~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
-+++++.|+|.+-.|-....+...++- .++++ |.-..+ .++|+++|++++....+...+..+|++++|++++|
T Consensus 57 ~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli 136 (425)
T d2hoxa1 57 CSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLI 136 (425)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHH
T ss_pred ceeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHH
Confidence 379999999998766555555554432 23333 443322 38999999999987777666667899999999999
Q ss_pred HHHHHHh--------cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 169 LQAVLAV--------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 169 ~~~l~~l--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
.+++.+| ++|||+|+++.|+|+.|...++..|.+... |.+|.+.++++++++++++++|+||||
T Consensus 137 ~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~--------~~~D~~~~~~~~~~~~~ii~l~sPnNP 208 (425)
T d2hoxa1 137 HGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQYIEMVTSPNNP 208 (425)
T ss_dssp HHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGGEEEEEESSCTT
T ss_pred HHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc--------cCCCHHHHHhhCCCCceEEEEECCCCC
Confidence 9999999 578999999999999999999998875443 446888888888999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc-CHH
Q 014172 241 TGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKH 319 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~ 319 (429)
||.+.. +..+ ++.+|.||+|.+..|. .+....+++|+++||||.||++|||+||+++ ++.
T Consensus 209 tG~l~~----------~v~~-~~~~I~DEaY~~~~f~--------~~~~~~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~ 269 (425)
T d2hoxa1 209 EGLLRH----------AVIK-GCKSIYDMVYYWPHYT--------PIKYKADEDILLFTMSKFTGHSGSRFGWALIKDES 269 (425)
T ss_dssp TCCCCC----------CSST-TCEEEEECTTCSTTTS--------CCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHH
T ss_pred Ccchhh----------hhhh-CCEEEEeccccCcccc--------chhhhcCCeEEEEeCHHhccCcchheeeEEeCCHH
Confidence 998743 2345 8999999999653332 2334468899999999999999999999765 567
Q ss_pred HHHHHHHHhhcccCCCchHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHHHHHhccCCCcee--------
Q 014172 320 FVAACNKIQSQFTSGASSISQKAGVAALGLG--------YAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM-------- 383 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~--------~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~-------- 383 (429)
+++.+.+.......+++.++|.++..+|+.. ....++++..++.++++++.+.+.|++.+++.+
T Consensus 270 i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~ 349 (425)
T d2hoxa1 270 VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEY 349 (425)
T ss_dssp HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEE
T ss_pred HHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccc
Confidence 8888888888888899999999999988641 012456778889999999999999988643322
Q ss_pred ------ecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 384 ------SEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 384 ------~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+..+.|+|+++.. ++.+++.+|++++||.+
T Consensus 350 ~~f~~~~~~~~~~f~wl~~~~-------------~~~~~~~~lL~e~gI~v 387 (425)
T d2hoxa1 350 CNYFRRMRPPSPSYAWVKCEW-------------EEDKDCYQTFQNGRINT 387 (425)
T ss_dssp ETTTTEEECCCCSEEEEEECS-------------GGGCSHHHHHHHTTEEC
T ss_pred eeeeeeccCCCcceeeeeCCC-------------ChHHHHHHHHHhCCEEE
Confidence 123344468888753 34556777888889986
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.96 E-value=6.8e-29 Score=241.44 Aligned_cols=299 Identities=15% Similarity=0.076 Sum_probs=214.6
Q ss_pred hcCC-CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHH
Q 014172 92 QAGV-SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQ 170 (429)
Q Consensus 92 ~~g~-~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~ 170 (429)
..|+ .+++|..+.+.++.++...+.+. ..+++..+..++++..++++. + ...+++++++|+++++..
T Consensus 16 ~~g~~~i~~~~gl~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~---~--~~~e~~~~~~~~~~a~~~ 83 (366)
T d2aeua1 16 EKGRDALYDLSGLSGGFLIDEKDKALLN-------TYIGSSYFAEKVNEYGLKHLG---G--DENDKCVGFNRTSSAILA 83 (366)
T ss_dssp HTCGGGCEECSSCCCCCCCCHHHHHHHT-------STTHHHHHHHHHHHHHHHHHT---C--CTTEEEEEESSHHHHHHH
T ss_pred hhccchHhhhccCCCCCCccHHHHHHHH-------HhcCchhhHHHHHHHHHHHcc---C--CCccEEEEeCCHHHHHHH
Confidence 3455 47889877777777666555432 223444566778888777764 2 245789999999999999
Q ss_pred HHHHhcCCCCEEEEc-CCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHH
Q 014172 171 AVLAVCSPGDEVIIP-APFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNL 249 (429)
Q Consensus 171 ~l~~l~~~gd~Vlv~-~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~ 249 (429)
++.++.++||.|+++ .|+|+.|...+++.|++++... |+++|++++++++|+|++++|+||+ +++.++
T Consensus 84 ~l~al~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~~---------d~e~l~~~i~~~tk~i~~~~p~n~~--~~~~~~ 152 (366)
T d2aeua1 84 TILALKPKKVIHYLPELPGHPSIERSCKIVNAKYFESD---------KVGEILNKIDKDTLVIITGSTMDLK--VIELEN 152 (366)
T ss_dssp HHHHHCCSEEEEECSSSSCCTHHHHHHHHTTCEEEEES---------CHHHHHTTCCTTEEEEEECBCTTSC--BCCHHH
T ss_pred HHHHhCCCCEEEEecCCCcchhHHHHHHhcCCeEECCC---------CHHHHHHhcCCCceEEEEEecCCCC--cCCHHH
Confidence 999976544444554 5899999999999999865321 8999999999999999999999985 467788
Q ss_pred HHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh
Q 014172 250 LDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (429)
Q Consensus 250 l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~ 329 (429)
+++|+++|++| |+++|+||+|+.+.|+....+..... +..+++.|+||.+ +|||+||+++++++++.+.....
T Consensus 153 l~~i~~ia~~~-~~~~i~De~y~~~~~~~~~~~~~~~~----~~di~~~S~sK~~--~g~~~G~i~~~~~~i~~~~~~~~ 225 (366)
T d2aeua1 153 FKKVINTAKNK-EAIVFVDDASGARVRLLFNQPPALKL----GADLVVTSTDKLM--EGPRGGLLAGKKELVDKIYIEGT 225 (366)
T ss_dssp HHHHHHHHHHH-TCCEEEECTTHHHHHHHTTCCCHHHH----TCSEEEEETTSSS--SSCSCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHhccC-cEEEEEecCccccccccccCCCHhhc----CceEEEecccccc--cccceeEEEecHHHHHHHHHHHh
Confidence 99999999999 99999999999877764433333222 3458899999965 69999999999999999999888
Q ss_pred cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH----HHHHHHHHhccCCCc--eeecCCceEEEEEecCCccCCc
Q 014172 330 QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE----RRDFLVKSFGELEGV--KMSEPQGAFYLFIDFSTYYGSE 403 (429)
Q Consensus 330 ~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~----~r~~l~~~L~~l~g~--~~~~p~~~~~~~~~l~~~~~~~ 403 (429)
..+++++++.|.++..+|+.. ....+++..+..++ ..+.+......+++. .+..+.+++|+|.........
T Consensus 226 ~~g~~~~~~~~~a~~~aL~tl--~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (366)
T d2aeua1 226 KFGLEAQPPLLAGIYRALKNF--NLERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTI- 302 (366)
T ss_dssp TTTCBCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHH-
T ss_pred cccccCCHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceee-
Confidence 888888999999998888641 12222222222221 223333333333333 233566778888776542110
Q ss_pred ccCCCCCCChHHHHHHHHHhCCeec
Q 014172 404 AEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 404 ~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
...++.+++.+|++++||++
T Consensus 303 -----~~~~~~~~a~~Ll~~~gV~~ 322 (366)
T d2aeua1 303 -----NIKKLIEIGFNLLKNYGIIT 322 (366)
T ss_dssp -----HHHHHHHHHHHHHHHHCEEC
T ss_pred -----cccCHHHHHHHHHHhCCEEE
Confidence 01246789999999999974
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=1.3e-25 Score=217.22 Aligned_cols=223 Identities=15% Similarity=0.212 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCC
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFL 215 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 215 (429)
.+++.+|+++ | .+++++|+|+++++.+++.++++|||+|+++.++|.+....++..|++++.+|++...++.
T Consensus 51 ~~~~~~A~~~----g----~e~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~ 122 (364)
T d2e7ja1 51 FIHNQLPKFL----G----CDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYA 122 (364)
T ss_dssp HHHTHHHHHT----T----SSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCC
T ss_pred HHHHHHHHHh----C----cCEEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeeccccccc
Confidence 3555555554 4 4689999999999999999999999999999999999888999999999999998777788
Q ss_pred CCHHHHHhhcccC-----CcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 216 LDPKVLESKLTEK-----SRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 216 ~d~e~l~~~l~~~-----~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
+|+++++++++++ +++|++++|+||||.+.+ +++|+++|++| |+++++|++|+... .+.....+
T Consensus 123 i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~---l~~I~~ia~~~-~i~livD~a~~~g~----~~~~~~~~--- 191 (364)
T d2e7ja1 123 ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD---VKKIAKVCSEY-DVPLLVNGAYAIGR----MPVSLKEI--- 191 (364)
T ss_dssp CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC---HHHHHHHHHTT-TCCEEEECTTTBTT----BCCCHHHH---
T ss_pred cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec---chhheeccccc-cchhhccccchhhh----hhhccccc---
Confidence 9999999999643 457889999999999999 89999999999 99999999997532 22233332
Q ss_pred CCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcc--------cCCCchHHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQF--------TSGASSISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~--------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
+.+++++|++|.++.+| ++||+++++++++.+......+ ..........++.+.+.. ..++++...+
T Consensus 192 -g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~ 266 (364)
T d2e7ja1 192 -GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPH---VRERIKRWDE 266 (364)
T ss_dssp -TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHH---HHHHGGGHHH
T ss_pred -ccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHH---HHHHHHHHHH
Confidence 34588999999999665 7999999988776654322111 111233333444444443 2333333444
Q ss_pred HHHHHHHHHHHHhccCCCceee
Q 014172 363 AFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
.+ ++++.+.+.|.++ |+...
T Consensus 267 ~~-~~~~~~~~~l~~~-g~~~~ 286 (364)
T d2e7ja1 267 EV-EKARRFAAEMEKL-GIKQL 286 (364)
T ss_dssp HH-HHHHHHHHHHHHT-TCEEE
T ss_pred HH-HHHHHHHHHHHHc-CCeec
Confidence 43 3555677888877 65543
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.92 E-value=2.3e-23 Score=203.01 Aligned_cols=301 Identities=19% Similarity=0.169 Sum_probs=204.8
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHc----CCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIRE----GFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAV 172 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~----~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l 172 (429)
.+.|+.+-.. +.|..+++++.+.++. +...+.......++.+.+.+.+.+.+| .++++|++|+|+|+++++++
T Consensus 8 ~~yld~~~~~-~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~--~~~~~i~~~~g~t~a~~~~~ 84 (381)
T d1elua_ 8 KTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFN--VDPNTITITDNVTTGCDIVL 84 (381)
T ss_dssp SEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTT--SCGGGEEEESSHHHHHHHHH
T ss_pred CEEeeCCccc-CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhC--CCcccEEEECChHHHhhhcc
Confidence 4677766533 3467788888776642 222222222223333334444444445 46789999999999999999
Q ss_pred HHh-cCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCH
Q 014172 173 LAV-CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPK 247 (429)
Q Consensus 173 ~~l-~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~ 247 (429)
.++ .++||+|+++++.|++.. ...+..|++++.+|.+.......+.+.+++.++++++++++++++||||.++|
T Consensus 85 ~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~~~~- 163 (381)
T d1elua_ 85 WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLP- 163 (381)
T ss_dssp HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCCBCC-
T ss_pred hhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccccch-
Confidence 998 579999999999998644 34556799999999865444333467888889999999999999999999999
Q ss_pred HHHHHHHHHHHhC---CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHH
Q 014172 248 NLLDEIARIVAKH---PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (429)
Q Consensus 248 ~~l~~I~~~a~~~---~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l 324 (429)
+++|.++|++| +++++++|.+++. +..+..+.. .+..+++.|++|.++ ...++|+++..++..+.+
T Consensus 164 --~~~I~~l~~~~~~~~~~~~~vD~~~~~----g~~~~~~~~----~~~D~~~~s~~K~~~-~p~G~g~l~~~~~~~~~~ 232 (381)
T d1elua_ 164 --LAEIMAVCRRHQGNYPVRVLVDGAQSA----GSLPLDFSR----LEVDYYAFTGHKWFA-GPAGVGGLYIHGDCLGEI 232 (381)
T ss_dssp --HHHHHHHHHHCCSSSCCEEEEECTTTB----TTBCCCTTT----SCCSEEEEESSSTTC-CCTTCEEEEECTTTGGGC
T ss_pred --hhHHHHHHhhccccccccccccccccc----ccccccccc----ccccccccccccccc-ccchhhHHHhhHHHHHhc
Confidence 78888888875 2699999999875 222223322 345699999999997 445678888877766543
Q ss_pred HHH----------------------hhcccCCCchHHHHHHHHHHhcCCCChH--HHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 325 NKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGE--VVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 325 ~~~----------------------~~~~~~~~~~~~q~aa~~~l~~~~~~~~--~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
... ......+++.....++.++++. ... ..+...++..++++++.+.|++++|
T Consensus 233 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~---~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~ 309 (381)
T d1elua_ 233 NPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQL---HQRQGTAEERYQAICQRSEFLWRGLNQLPH 309 (381)
T ss_dssp CCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred Ccccccccccccccccccccccccccccccccccchhhhhhhhhhhh---HHHhcccccchhhhhhHHHHHHHHHhcCCC
Confidence 210 0111223555555555555553 111 1244567788889999999999999
Q ss_pred ceeec---CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 VKMSE---PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 ~~~~~---p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+++.. +.+++ +.+.+++. .+.++++++|.+ .||.|
T Consensus 310 ~~~~~~~~~~~~~-vsf~~~~~-----------~~~~~i~~~L~~-~gi~v 347 (381)
T d1elua_ 310 VHCLATSAPQAGL-VSFTVDSP-----------LGHRAIVQKLEE-QRIYL 347 (381)
T ss_dssp EEESCSSCCSSSE-EEEEECSS-----------SCHHHHHHHHHH-TTEEC
T ss_pred eEecCCCCccccE-EEEEcCCC-----------CCHHHHHHHHHh-CCcEE
Confidence 88763 45665 55666543 256777776654 59876
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=2.2e-22 Score=195.90 Aligned_cols=297 Identities=12% Similarity=0.086 Sum_probs=217.1
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCCC---CCCC----HHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTP---NAGT----LELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~----~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+++++|+.++ ..+..+|++.+++.+++++.-.+.+. ..|. .+|++.+|+++ | .+..++++++
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~----g----~e~al~~~SG 107 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL----G----YSRALLFISG 107 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH----T----CSEEEEESCH
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhc----C----CCceEEeccc
Confidence 467799999886 66777889999999998752122211 1244 45555555554 4 4678888888
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc---cCCcEEEEcCCCCCc
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---EKSRLLILCSPSNPT 241 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~---~~~~~i~l~~p~NPt 241 (429)
..+...++.+++.++|.|++....|.+....++..+++++.++.+ |++++++.+. ++.++|+++++++++
T Consensus 108 ~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~hn-------d~~~le~~l~~~~~~~~~vv~e~v~s~~ 180 (383)
T d1bs0a_ 108 FAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHN-------DVTHLARLLASPCPGQQMVVTEGVFSMD 180 (383)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTT-------CHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred chhhHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecch-------HHHHHHHHhcccCCCceEEEecCCCCCC
Confidence 889999999999999999999999999999999999999988852 7888877764 356678889999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHH
Q 014172 242 GSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (429)
Q Consensus 242 G~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~ 321 (429)
|.+.| +++|.++|++| |+++++||+|+..+++....... ...+ ....+.+.||+|.+|..| |++.++.+++
T Consensus 181 G~i~p---l~~l~~l~~~~-~~~livDeah~~gv~G~~g~G~~-~~~~-~~~~~~~~t~~ka~g~~G---g~v~~~~~~~ 251 (383)
T d1bs0a_ 181 GDSAP---LAEIQQVTQQH-NGWLMVDDAHGTGVIGEQGRGSC-WLQK-VKPELLVVTFGKGFGVSG---AAVLCSSTVA 251 (383)
T ss_dssp CCBCC---HHHHHHHHHHT-TCEEEEECTTTTTTSSGGGCCHH-HHTT-CCCSEEEEESSSTTSSCC---EEEEECHHHH
T ss_pred Ccccc---hhHHHHHHHhc-CcEEEeecceeeeecCCcccchH-HHcC-Cccccccccccccccccc---cccccchhHH
Confidence 99999 88899999999 99999999999887764433222 2222 244467889999999887 9999999999
Q ss_pred HHHHHHhhccc--CCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCc
Q 014172 322 AACNKIQSQFT--SGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTY 399 (429)
Q Consensus 322 ~~l~~~~~~~~--~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~ 399 (429)
+.++.....+. ...++....++.++++.. .....+..+++++++..++.+.|.++ |+.+....+.+ +.+.+...
T Consensus 252 ~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~--~~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~s~I-i~v~~g~~ 327 (383)
T d1bs0a_ 252 DYLLQFARHLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLAALITRFRAGVQDL-PFTLADSCSAI-QPLIVGDN 327 (383)
T ss_dssp HHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHTTS-SCEECSCCSSB-CCEEEESH
T ss_pred HHHHhhchhhhhcccccchHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHhc-CCccCCCCCCE-EEEEECCH
Confidence 98876643332 223344444445555431 12335567778888999999999998 77776555544 33334321
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
....++.++|+++ ||.|+
T Consensus 328 -----------~~a~~~~~~L~~~-Gi~v~ 345 (383)
T d1bs0a_ 328 -----------SRALQLAEKLRQQ-GCWVT 345 (383)
T ss_dssp -----------HHHHHHHHHHHHT-TEECC
T ss_pred -----------HHHHHHHHHHHHC-CceEE
Confidence 1466889999876 99864
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.90 E-value=9.1e-23 Score=198.21 Aligned_cols=303 Identities=15% Similarity=0.134 Sum_probs=218.1
Q ss_pred CCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCCC---CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 94 GVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 94 g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
++++++|++++ ..+..+|.++++..+++++.-.+.+. ..|..++.+.+.+.+++++| .+..++.+.+..+..
T Consensus 44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g----~e~all~~sG~~An~ 119 (396)
T d2bwna1 44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQ----KEAALVFSSAYNAND 119 (396)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTT----CSEEEEESCHHHHHH
T ss_pred CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhC----CCceeeeecchHHHH
Confidence 35689999988 77777899999999998752222221 23555555555555555555 356666666666676
Q ss_pred HHHHHh--cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc---c-CCcEEEEcCCCCCccC
Q 014172 170 QAVLAV--CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT---E-KSRLLILCSPSNPTGS 243 (429)
Q Consensus 170 ~~l~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~---~-~~~~i~l~~p~NPtG~ 243 (429)
.++.++ +.+||.|+.+.-.|.+....+++.+++++.++.+ |.+.+++.+. + +.++|++....+++|.
T Consensus 120 ~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~egvySmdGd 192 (396)
T d2bwna1 120 ATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVYSMDGD 192 (396)
T ss_dssp HHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBCTTTCC
T ss_pred HHHHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeEEEEeeccCccc
Confidence 677777 5788999999999999999999999999998753 5666655543 2 4557777888999999
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHH
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA 323 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~ 323 (429)
+.| +++|.++|++| ++++++||+|+..+++..+......+....+..|+++||||++|..| ||+.+++++++.
T Consensus 193 ~ap---l~~l~~L~~~y-~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G---g~v~~~~~~i~~ 265 (396)
T d2bwna1 193 FGP---IKEICDIAEEF-GALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG---GYIAASARMVDA 265 (396)
T ss_dssp BCC---HHHHHHHHHHH-TCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC---EEEEECHHHHHH
T ss_pred ccc---cHhHHHHhhhh-cceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc---cccchhHHHHHH
Confidence 999 99999999999 99999999999988876544444333333466799999999999888 999999999999
Q ss_pred HHHHhhcccC--CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccC
Q 014172 324 CNKIQSQFTS--GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYG 401 (429)
Q Consensus 324 l~~~~~~~~~--~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~ 401 (429)
+......+.+ .+++....++.++++.. ..+...+.++.++.+.+++...|.++ |+.+....+.. +.+.+...
T Consensus 266 l~~~~~~~ifStalpp~~~aa~~~al~i~--~~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~~~~~spI-vpv~ig~~-- 339 (396)
T d2bwna1 266 VRSYAPGFIFSTSLPPAIAAGAQASIAFL--KTAEGQKLRDAQQMHAKVLKMRLKAL-GMPIIDHGSHI-VPVVIGDP-- 339 (396)
T ss_dssp HHHHCHHHHTSBCCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHH-TCCBCCCSSSC-EEEECCCH--
T ss_pred HHhhcchhhhcccCcHHHHHHHHHHHHHh--hcchHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCCCCE-EEEEeCCH--
Confidence 9876544333 33444444455555531 12334566778888889999999887 77766544443 44555431
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
....+++++|++++||.|+
T Consensus 340 ---------~~~~~~a~~lL~e~Gi~v~ 358 (396)
T d2bwna1 340 ---------VHTKAVSDMLLSDYGVYVQ 358 (396)
T ss_dssp ---------HHHHHHHHHHHHHHCEECC
T ss_pred ---------HHHHHHHHHHHHhCCEEEE
Confidence 1467888999987799864
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.6e-22 Score=195.49 Aligned_cols=298 Identities=16% Similarity=0.148 Sum_probs=217.3
Q ss_pred cCCCeEEcCCCC-CCCCChHHHHHHHHHHHHcCCCCCCCC---CCCH----HHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 93 AGVSVIRLAAGE-PDFDTPVLIAEAGINAIREGFTRYTPN---AGTL----ELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 93 ~g~~~i~L~~g~-~~~~~p~~v~~a~~~~~~~~~~~Y~~~---~G~~----~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
.|+.+|||++++ ..+..+|.+.+++.+++++....++.+ .|.. +|.+.+|+++ | .+.+++++++
T Consensus 43 dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~----g----~e~al~~~SG 114 (401)
T d1fc4a_ 43 DGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL----G----MEDAILYSSC 114 (401)
T ss_dssp TSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH----T----CSEEEEESCH
T ss_pred CCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhh----c----CCceEEecch
Confidence 467799998876 566778999999999987633333322 2333 4555555554 3 5689999999
Q ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc------cCCcEEEEcCCC
Q 014172 165 KQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLT------EKSRLLILCSPS 238 (429)
Q Consensus 165 ~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~------~~~~~i~l~~p~ 238 (429)
.++...++.+++.++|.|++..-.|.++...+...++++..++.+ |.+.+++.+. ....+|++.+..
T Consensus 115 ~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~~liv~egv~ 187 (401)
T d1fc4a_ 115 FDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQELEARLKEAREAGARHVLIATDGVF 187 (401)
T ss_dssp HHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred hhhhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChHHHHHHHHHhhhcccCceEEEEcCCC
Confidence 999999999999999999999999999999999999999888753 5555555442 233466667777
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
+..|...+ +++|.++|++| |+++|+||+++.++++.........+....+..++++||+|.+| |...|++.++.
T Consensus 188 s~~G~~~~---L~~l~~L~~~~-~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~g--g~~Gg~v~g~~ 261 (401)
T d1fc4a_ 188 SMDGVIAN---LKGVCDLADKY-DALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALG--GASGGYTAARK 261 (401)
T ss_dssp TTTTEECC---HHHHHHHHHHT-TEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SSSCEEEEECH
T ss_pred CCCCchhh---hhHHHHHHhhc-CcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccc--cCCcccccCCH
Confidence 88898888 99999999999 99999999999988876444333223323456799999999994 44459999999
Q ss_pred HHHHHHHHHhhc--ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEec
Q 014172 319 HFVAACNKIQSQ--FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDF 396 (429)
Q Consensus 319 ~~~~~l~~~~~~--~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l 396 (429)
++++.+...... ++...++....++..+++. ....++++++++++.+++.+.+... |+.+...++++ +.+.+
T Consensus 262 ~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~----~~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~~~pI-v~v~~ 335 (401)
T d1fc4a_ 262 EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEM----VEAGSELRDRLWANARQFREQMSAA-GFTLAGADHAI-IPVML 335 (401)
T ss_dssp HHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHH----HHTCHHHHHHHHHHHHHHHHHHHHT-TCCBCCSSSSE-EEEEE
T ss_pred HHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcc----cccCHHHHHHHHHHHHHHHhhhccc-CCccCCCCCCE-EEEEE
Confidence 999988765332 3334555555666666654 2334567888888999999999887 77766556554 44444
Q ss_pred CCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 397 STYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.+. ....+++++|+++ ||.++
T Consensus 336 ~~~-----------~~a~~~~~~L~~~-Gi~v~ 356 (401)
T d1fc4a_ 336 GDA-----------VVAQKFARELQKE-GIYVT 356 (401)
T ss_dssp ECH-----------HHHHHHHHHHHHT-TEECC
T ss_pred CCH-----------HHHHHHHHHHHHC-CceEE
Confidence 321 1356899998876 99863
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1.5e-22 Score=197.92 Aligned_cols=259 Identities=15% Similarity=0.144 Sum_probs=182.9
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCC-CCCC-----------CHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYT-PNAG-----------TLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~-~~~G-----------~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
|.|+.+-.. +.|+.+++++.+.+.+.. .|+ |..+ ..++|+.+|+++ | .++++|++|+|++
T Consensus 4 iYlD~aa~~-p~~~~v~ea~~~~~~~~~-~~~np~~~~~~~~~~~~~~~~~~R~~iA~~l----g--~~~~~I~~~~~~t 75 (391)
T d1p3wa_ 4 IYLDYSATT-PVDPRVAEKMMQFMTMDG-TFGNPASRSHRFGWQAEEAVDIARNQIADLV----G--ADPREIVFTSGAT 75 (391)
T ss_dssp EECBTTTCC-CCCHHHHHHHHTTTSTTS-CCCCTTCTTSHHHHHHHHHHHHHHHHHHHHH----T--CCGGGEEEESSHH
T ss_pred EEeeCcccc-CCCHHHHHHHHHHHHhcc-ccCCCchhhhHHHHHHHHHHHHHHHHHHHHc----C--CCCCcEEEECCHH
Confidence 566655433 568899999988775432 333 3222 124566666665 4 5788999999999
Q ss_pred HHHHHHHHHh----cCCCCEEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCC
Q 014172 166 QSILQAVLAV----CSPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPS 238 (429)
Q Consensus 166 ~al~~~l~~l----~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~ 238 (429)
+++..++.++ .++||+|++.++.|+++.... +..|++++.+|.+. ++.+|++.++++++++|++|++++++
T Consensus 76 ~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~~~~~i~~~T~lv~is~~~ 153 (391)
T d1p3wa_ 76 ESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDTILVSIMHVN 153 (391)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTEEEEECCSBC
T ss_pred HHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC--CCeEcHHHHHHhCCCCcEEEEEECCC
Confidence 9999888775 479999999999999876544 45699999999864 34589999999999999999999999
Q ss_pred CCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 239 NPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 239 NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
||||.++| +++|+++|++| |+++++|.+|... ..+..+..+ +..+++.|++|.+|.+| +|+++..+
T Consensus 154 n~tG~~~~---~~~I~~~~~~~-~~~~ivD~~~~~g----~~~~d~~~~----~~D~~~~s~~k~~g~~g--~g~~~~~~ 219 (391)
T d1p3wa_ 154 NEIGVVQD---IAAIGEMCRAR-GIIYHVDATQSVG----KLPIDLSQL----KVDLMSFSGHKIYGPKG--IGALYVRR 219 (391)
T ss_dssp TTTCCBCC---HHHHHHHHHHH-TCEEEEECTTTBT----TBCCCTTTS----CCSEEEEESTTTTSCSS--CEEEEECB
T ss_pred CCCeeECC---HHHHHHHhccC-CcEEEEeeccccC----Cccccchhc----cccccccccccccCCCc--eEEEEEec
Confidence 99999999 88999999999 9999999999763 222233322 34488889999987666 57777765
Q ss_pred HHHHHHHHH-------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCcee
Q 014172 319 HFVAACNKI-------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKM 383 (429)
Q Consensus 319 ~~~~~l~~~-------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~ 383 (429)
+........ ........+.....+....+.. ..+......+++++.++.+.+.|.++++..+
T Consensus 220 ~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 288 (391)
T d1p3wa_ 220 KPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI---AKEEMATEMERLRGLRNRLWNGIKDIEEVYL 288 (391)
T ss_dssp TTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTTTSTTEEE
T ss_pred chhcccCCcccCCccccCcccCcchhhhhhhhhhhhhH---HHHHhhHHHHHHHHHHHHHHHHHHhhcCeee
Confidence 543332211 1111222333333333334433 2344555567778888889999988866544
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.2e-19 Score=177.89 Aligned_cols=296 Identities=15% Similarity=0.169 Sum_probs=211.2
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCC---------CCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNA---------GTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~---------G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
++.|.|+.+-.. +.|+.+.+++.+.+++.+.+..... -..+.|+.+++++ |. ..+++|+++.|+|
T Consensus 21 ~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l----~~-~~~~~i~~~~~~T 94 (405)
T d1jf9a_ 21 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI----NA-RSAEELVFVRGTT 94 (405)
T ss_dssp EECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT----TC-SCGGGEEEESSHH
T ss_pred CCeEEEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc----CC-CCcccccccCcHH
Confidence 456888776655 5688999999988876432221110 1234555566655 32 1457999999999
Q ss_pred HHHHHHHHHh----cCCCCEEEEcCCCCCChH----HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCC
Q 014172 166 QSILQAVLAV----CSPGDEVIIPAPFWVSYP----EMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSP 237 (429)
Q Consensus 166 ~al~~~l~~l----~~~gd~Vlv~~p~y~~~~----~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p 237 (429)
++++.++..+ ..+||+|++.+-.|++.. ..++..|++++.+|++++ ..+|++.++++++++|+++++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~--g~~~~~~~~~~i~~~t~lv~~~~v 172 (405)
T d1jf9a_ 95 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQLETLPTLFDEKTRLLAITHV 172 (405)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT--SCBCGGGHHHHCCTTEEEEEEESB
T ss_pred HHHHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCC--CcCCHHHHHHhccCCcEEEEEecC
Confidence 9999887763 578999999999998744 445677999999998754 458999999999999999999999
Q ss_pred CCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC
Q 014172 238 SNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP 317 (429)
Q Consensus 238 ~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~ 317 (429)
+|.||.++| +++|+++|+++ |+++++|.+++. |..+..+..+ +..+++.|++|++|.+| +|+++.+
T Consensus 173 ~~~tG~~~p---i~~i~~~~~~~-g~~~~vD~~q~~----g~~~id~~~~----~~D~~~~s~hK~~Gp~G--~g~l~v~ 238 (405)
T d1jf9a_ 173 SNVLGTENP---LAEMITLAHQH-GAKVLVDGAQAV----MHHPVDVQAL----DCDFYVFSGHKLYGPTG--IGILYVK 238 (405)
T ss_dssp CTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEEEGGGTTSCSS--CEEEEEC
T ss_pred CCcccccCc---hHHhhhHHHHc-CCeeecccceec----cccccchhhc----CCceeeccccccccCCC--ceeeeec
Confidence 999999999 99999999999 999999999876 3333333333 44599999999987666 7999999
Q ss_pred HHHHHHHHHH----------------------hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 014172 318 KHFVAACNKI----------------------QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 318 ~~~~~~l~~~----------------------~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (429)
+++.+.+... .+....+.+..+..++..+++.. .+...+...++.+...+++.+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~L~~~~~~~l 316 (405)
T d1jf9a_ 239 EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYV--SALGLNNIAEYEQNLMHYALSQL 316 (405)
T ss_dssp HHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcccccccccCccccccccccccchhhhcCCCCcHHHHHHHHHHHHHH--HHhChHHHHHHHHHHHHHHHhhh
Confidence 8876543211 01112345666666666666630 01235566666777778888888
Q ss_pred ccCCCceeecCC--ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 376 GELEGVKMSEPQ--GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 376 ~~l~g~~~~~p~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.++.+....|. ++. +.+.++.. +..++...| ++.||.+
T Consensus 317 ~~~~~~~~~~~~~r~~i-vsf~~~~~------------~~~~~~~~L-~~~gI~v 357 (405)
T d1jf9a_ 317 ESVPDLTLYGPQNRLGV-IAFNLGKH------------HAYDVGSFL-DNYGIAV 357 (405)
T ss_dssp TTSTTEEEESCTTCCSE-EEEEETTC------------CHHHHHHHH-HHTTEEC
T ss_pred hcCCcccccCCcCcCcE-EEEEcCCC------------CHHHHHHHH-HHCCcEE
Confidence 888666665443 454 45677653 577777765 6679976
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=4.9e-22 Score=188.74 Aligned_cols=297 Identities=18% Similarity=0.185 Sum_probs=197.6
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
+|||....-.-| +|++++|+.++. .+...|++.+...+|++.+|+++ | .+++++++||++++..++++++
T Consensus 1 ~~~~~~~~~t~p-~p~v~~A~~~a~-~g~~~yg~~p~~~~le~~lA~~~----G----~~~~~~~~sGt~A~~~al~a~~ 70 (343)
T d1m6sa_ 1 MIDLRSDTVTKP-TEEMRKAMAQAE-VGDDVYGEDPTINELERLAAETF----G----KEAALFVPSGTMGNQVSIMAHT 70 (343)
T ss_dssp CEECSCGGGCCC-CHHHHHHHHTCC-CCCGGGTCCHHHHHHHHHHHHHT----T----CSEEEEESCHHHHHHHHHHHHC
T ss_pred CcccccccCCCC-CHHHHHHHHhhh-cCCcccCCCHHHHHHHHHHHHHH----C----CCeEEEeCCHHHHHHHHHHHHh
Confidence 366655443323 467999987653 24456888888889999999886 3 3578999999999999999999
Q ss_pred CCCCEEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC------CcEE-EEcCCCCCccCCCC
Q 014172 177 SPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLL-ILCSPSNPTGSVYP 246 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~------~~~i-~l~~p~NPtG~~~~ 246 (429)
.+||.+++..+.+..+. ......+..++.++.. .+..|++.+++.+... ++.+ +.+.++|++|.+++
T Consensus 71 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (343)
T d1m6sa_ 71 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVP 147 (343)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCC
T ss_pred ccCCceeccccccceeeecccccccccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccccCCceecC
Confidence 99999999998776543 3445556676666643 3446999999988643 3334 45777899999999
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHH
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNK 326 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~ 326 (429)
.+++++|.++|++| +++++.|++|..+........ ..... ......+ ++|..+..|.+.|+++...+.+.....
T Consensus 148 ~~~l~~i~~~~~~~-g~~~~~D~a~~~~~~~~~~~~-~~~~~--~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~ 221 (343)
T d1m6sa_ 148 LENIKEICTIAKEH-GINVHIDGARIFNASIASGVP-VKEYA--GYADSVM--FCLSKGLCAPVGSVVVGDRDFIERARK 221 (343)
T ss_dssp HHHHHHHHHHHHHH-TCEEEEEETTHHHHHHHHCCC-HHHHH--HTCSEEE--EESSSTTCCSSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CeEEEeccccccccccccccc-hhhhc--ccccccc--ccccccccccccccccccHHHHhhhHh
Confidence 99999999999999 999999999987554321111 11111 1112333 333334456778999998888877776
Q ss_pred HhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcccC
Q 014172 327 IQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEAEG 406 (429)
Q Consensus 327 ~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~~~ 406 (429)
.......+.+.....++...... .......+.+.+++..+.+.+.++.+.....|..++++|++++..
T Consensus 222 ~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------- 289 (343)
T d1m6sa_ 222 ARKMLGGGMRQAGVLAAAGIIAL-----TKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNL------- 289 (343)
T ss_dssp HHHHHTCCCSSTHHHHHHHHHHH-----HHSSTTHHHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTS-------
T ss_pred hCcccccccchhHHHHHhhhhhh-----hhhHHHHHHHHHHHHHhhhHHHHhccCccCCCCCceEEEEEeCCC-------
Confidence 65544444444443333322221 111122233444555566666665455555566677899998753
Q ss_pred CCCCCChHHHHHHHHHhCCeec
Q 014172 407 FGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 407 ~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
..+..+|+++|+++ ||.+
T Consensus 290 ---~~~a~~l~~~L~~~-Gi~v 307 (343)
T d1m6sa_ 290 ---KVNAHGFIEALRNS-GVLA 307 (343)
T ss_dssp ---SSCHHHHHHHHHHH-TEEC
T ss_pred ---cccHHHHHHHHHHC-CCEE
Confidence 13678999999887 8875
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.83 E-value=3.2e-18 Score=167.82 Aligned_cols=299 Identities=17% Similarity=0.193 Sum_probs=210.0
Q ss_pred CCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC---CC------CHHHHHHHHHHHHhhcCCCCCCCcEEEecCh
Q 014172 94 GVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN---AG------TLELRSAICHKLKEENGLSYTPDQILVSNGA 164 (429)
Q Consensus 94 g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~---~G------~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~ 164 (429)
++++|.|+.+-.. +.|+.+++++.+.+++.+.+.... .| ..+.|+.+++++ |.+ .++.+++++++
T Consensus 20 ~~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~ll----ga~-~~~~i~~~~~t 93 (408)
T d1t3ia_ 20 GHPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFI----NAR-SPREIVYTRNA 93 (408)
T ss_dssp TEECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHT----TCS-CGGGEEEESSH
T ss_pred CCCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh----CCC-CcccEEeecch
Confidence 3467999877765 468899999999887643221111 01 113455555554 521 35789999999
Q ss_pred HHHHHHHHHH----hcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcC
Q 014172 165 KQSILQAVLA----VCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCS 236 (429)
Q Consensus 165 ~~al~~~l~~----l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~ 236 (429)
++++++++.. -.++||+|++.+-.|++... .++..|.+++.+|.+. +...+.+.+++++++++++|.+++
T Consensus 94 t~~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~--~~~~~~~~l~~~~~~~t~lv~i~~ 171 (408)
T d1t3ia_ 94 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE--QESFDLEHFKTLLSEKTKLVTVVH 171 (408)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT--TSSBCHHHHHHHCCTTEEEEEEES
T ss_pred HHHHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccc--cccccHHHhhhccCCCceEEEEec
Confidence 9999987766 35789999999988887543 4556799999999764 345799999999999999999999
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
.+|-||..+| +++|.++|+++ |+++++|.+++. |..+..+..+ +.++++.|.+|.+|.+| +|+++.
T Consensus 172 ~~~~tG~~~p---~~~i~~~~~~~-g~~~ivDa~q~~----g~~~id~~~~----~~D~~~~s~hK~~gp~G--~g~l~v 237 (408)
T d1t3ia_ 172 ISNTLGCVNP---AEEIAQLAHQA-GAKVLVDACQSA----PHYPLDVQLI----DCDWLVASGHKMCAPTG--IGFLYG 237 (408)
T ss_dssp BCTTTCBBCC---HHHHHHHHHHT-TCEEEEECTTTT----TTSCCCHHHH----TCSEEEEEGGGTTSCTT--CEEEEE
T ss_pred ccccccccCc---HHHHhhhhhcc-Cceeeeccceec----cccccccccc----CCceEEeccccccCCCC--cccccc
Confidence 9999999999 88999999999 999999999876 3333344333 44589999999876444 799999
Q ss_pred CHHHHHHHHHHh---------------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHh
Q 014172 317 PKHFVAACNKIQ---------------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSF 375 (429)
Q Consensus 317 ~~~~~~~l~~~~---------------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L 375 (429)
.++......... +....+++.....++..+++.- .....+++.++..+..+++.+.+
T Consensus 238 ~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~--~~~g~~~i~~~~~~l~~~l~~~~ 315 (408)
T d1t3ia_ 238 KEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYL--TDLGMENIHNYEVELTHYLWQGL 315 (408)
T ss_dssp CHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHhHHhhhh
Confidence 988765532110 1112334555566666666530 01235566777778888899999
Q ss_pred ccCCCceeecCC-----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 376 GELEGVKMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 376 ~~l~g~~~~~p~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
.+.+++.+..+. .+..+.+.++.. +..++...| ++.||.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~iv~f~~~~~------------~~~~v~~~L-~~~gI~v~ 361 (408)
T d1t3ia_ 316 GQIPQLRLYGPNPKHGDRAALASFNVAGL------------HASDVATMV-DQDGIAIR 361 (408)
T ss_dssp HTCTTEEEESCCGGGSCBCSEEEEEETTB------------CHHHHHHHH-HTTTEECB
T ss_pred ccCccccccCCCccccCcceEEEEEeCCC------------CHHHHHHHH-hhCCcEEe
Confidence 988887765322 122355667653 677888776 56699763
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.82 E-value=1.5e-18 Score=168.82 Aligned_cols=275 Identities=16% Similarity=0.227 Sum_probs=189.5
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~ 188 (429)
..+-++++.+.++++..-++...-..++++.+|+++ ....++.+++||.|+.++++++ +++||+|+++..+
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~~v~~fE~~~a~~~--------g~~~~v~~~SGt~Al~lal~~l~~~~gdeVi~p~~t 83 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH--------GAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFT 83 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHT--------TCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHH--------CcCeEEEeCCHHHHHHHHHHHcCCCCCCEEEEeccc
Confidence 366688888888876322233334578888888875 3457899999999999999997 7899999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 014172 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (429)
Q Consensus 189 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~D 268 (429)
|......+...|++++.+++++ .++.+|++.+++.+++++++|+ +.+..|...+ +.+|.++|+++ ++.||+|
T Consensus 84 ~~a~~~ai~~~g~~p~~~d~~~-~~~~~d~~~~~~~i~~~tk~i~---~~~~~g~~~d---~~~i~~~~~~~-~i~lieD 155 (384)
T d1b9ha_ 84 FISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMAD---MDALAKISADT-GVPLLQD 155 (384)
T ss_dssp CTHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCC---HHHHHHHHHHH-TCCBCEE
T ss_pred cccccccccccccccccccccc-cccccchhhhcccccccccccc---cccccccccc---cccchhhhhhh-hhhhhhh
Confidence 9999999999999999999875 4577999999999999999987 4567888888 88999999999 9999999
Q ss_pred cCCcccc-cCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEc-CHHHHHHHHHHhhcc-------------
Q 014172 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAG-PKHFVAACNKIQSQF------------- 331 (429)
Q Consensus 269 eay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~------------- 331 (429)
.+++.+. +.|.. +..+. + +.+.|| +|.++ .| ..|.+++ ++++.+.++......
T Consensus 156 ~a~a~ga~~~g~~---~g~~g---~--~~~~Sf~~~K~i~-~g-~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (384)
T d1b9ha_ 156 AAHAHGARWQGKR---VGELD---S--IATFSFQNGKLMT-AG-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHK 225 (384)
T ss_dssp CTTCTTCEETTEE---GGGSS---S--CEEEECCTTSSSC-SS-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCC
T ss_pred hceecccccCCEe---cCccc---c--cceeccccccccc-cc-ccchhhhhhHHHHHHHHHHHhcCCCCcccccccccc
Confidence 9998754 23321 12221 2 445555 68875 33 3577666 456666665554321
Q ss_pred ----cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec--C--C-ce-EEEEEecCCccC
Q 014172 332 ----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--P--Q-GA-FYLFIDFSTYYG 401 (429)
Q Consensus 332 ----~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~--p--~-~~-~~~~~~l~~~~~ 401 (429)
.+-++.+..+.+...|+ .+++..++.+++.+++.+.|++++++.... . . .. ++..+.++....
T Consensus 226 ~~G~n~rms~l~Aaig~~qL~-------~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (384)
T d1b9ha_ 226 IAGSNMRLNEFSASVLRAQLA-------RLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTE 298 (384)
T ss_dssp SCCCBCBCBHHHHHHHHHHHT-------THHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCH
T ss_pred ccccccccccchhhhhhhhhh-------hcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceeccccc
Confidence 12244444333444443 245556666778888888898887765431 1 1 11 223344443200
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCee
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
....+|.++|.++ ||-
T Consensus 299 ---------~~Rd~l~~~L~~~-GI~ 314 (384)
T d1b9ha_ 299 ---------ERRNALVDRLVEA-GLP 314 (384)
T ss_dssp ---------HHHHHHHHHHHHT-TCC
T ss_pred ---------ccHHHHHHHHHHC-CCC
Confidence 1234688888655 875
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=6.3e-19 Score=166.71 Aligned_cols=300 Identities=11% Similarity=0.063 Sum_probs=192.1
Q ss_pred CCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHH
Q 014172 95 VSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLA 174 (429)
Q Consensus 95 ~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~ 174 (429)
++.++|++.+ ..+.+|+|++|+.++...+...|+++....++|+.+|+++ | .+..+++|+|+++++..++..
T Consensus 2 ~~~~~f~s~n-~~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~----g---~~~~v~f~~sGt~An~~a~~~ 73 (345)
T d1v72a1 2 PPALGFSSDN-IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIF----E---RDVEVFLVPTGTAANALCLSA 73 (345)
T ss_dssp CCCCBCSCGG-GCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHH----T---SCCEEEEESCHHHHHHHHHHT
T ss_pred CCCcCcCCCC-CCCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHH----C---CCcEEEECCchHHHHHHHHHH
Confidence 3578888644 5566789999998875444456766666667777777776 4 345799999999999999999
Q ss_pred hcCCCCEEEEcCCCCCChH---HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC------Cc-EEEEcCCCCCccCC
Q 014172 175 VCSPGDEVIIPAPFWVSYP---EMARIADATPVILPTRISENFLLDPKVLESKLTEK------SR-LLILCSPSNPTGSV 244 (429)
Q Consensus 175 l~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~------~~-~i~l~~p~NPtG~~ 244 (429)
++.+++.+++....+.... ......+..+..++.. .+...+++.+++.+... +. .++.+.+.|++|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
T d1v72a1 74 MTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDG--PAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSI 151 (345)
T ss_dssp SCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCC--GGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCC
T ss_pred HHhcCCccccccccceeeechhhHHHhcCccccccccc--ccccccHHHhhhhhcccccccccccceeeeeecccccccc
Confidence 9999988887776544432 3445567776666543 33457999999988653 23 34457778899999
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHH
Q 014172 245 YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAAC 324 (429)
Q Consensus 245 ~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l 324 (429)
.+.++++++.++|++| +++++.|+++....+.... ..+..............+..|..+ .+.+. .+..........
T Consensus 152 ~~~~~~~~i~~~~~~~-~~~~~~D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~ 227 (345)
T d1v72a1 152 YTLDEIEAIGDVCKSS-SLGLHMDGSRFANALVSLG-CSPAEMTWKAGVDALSFGATKNGV-LAAEA-IVLFNTSLATEM 227 (345)
T ss_dssp CCHHHHHHHHHHHHHT-TCEEEEEETTHHHHHHHHT-CCTTTTTGGGTCCEEEECCGGGTC-SSCEE-EEESSGGGHHHH
T ss_pred ccchhhhhHHHHHHhc-Cceeeecccccceeccccc-cCHHHhhccccccccccCcccccc-ccccc-cccchhhhhhhc
Confidence 9999999999999999 9999999999865433211 111111111223344444444433 22222 233333333333
Q ss_pred HHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCCcc
Q 014172 325 NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGSEA 404 (429)
Q Consensus 325 ~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~~~ 404 (429)
...........+.....++...... .............++...+.+.+.+++|+.+..|..+++++++++
T Consensus 228 ~~~~~~~~~~~~~~~~aa~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~------- 297 (345)
T d1v72a1 228 SYRRKRAGHLSSKMRFLSAQIDAYL---TDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD------- 297 (345)
T ss_dssp HHHHHHTTCCCSSTHHHHHHHHHHT---STTHHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC-------
T ss_pred cccccccccccchhhHHhhhhHHHH---HHhhhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC-------
Confidence 2222222222333333322222222 133344555666677778888999999999888887888999875
Q ss_pred cCCCCCCChHHHHHHHHHhCCeec
Q 014172 405 EGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++++|+++ ||.|
T Consensus 298 ---------~~~~~~L~~~-gi~v 311 (345)
T d1v72a1 298 ---------SAMIDALLKA-GFGF 311 (345)
T ss_dssp ---------HHHHHHHHHT-TCBC
T ss_pred ---------HHHHHHHHHc-CCCc
Confidence 2567788877 7754
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=2.2e-18 Score=166.85 Aligned_cols=239 Identities=18% Similarity=0.235 Sum_probs=172.3
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCC
Q 014172 110 PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPF 188 (429)
Q Consensus 110 p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~ 188 (429)
+++-++++.+.+++++...+ +...+|++.+|++++ .+.++.+++||.|+.+++.++ +++||+|+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~G--~~v~~~E~~la~~~g--------~~~ai~~~sgt~Al~~al~al~~~~gdeVi~~~~~ 80 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITTG--PKNQELEAAFCRLTG--------NQYAVAVSSATAGMHIALMALGIGEGDEVITPSMT 80 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSSS--HHHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHhcCCCcCC--HHHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHhCCCCCCEEEEeccc
Confidence 35556888888887644433 346788888888873 356788888999999999998 8999999999999
Q ss_pred CCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEc
Q 014172 189 WVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSD 268 (429)
Q Consensus 189 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~D 268 (429)
|.+....+..+|++++.++++++ .+.+|++.|+++++++|++|+++ |..|...+ +++|.++|++| |++||+|
T Consensus 81 ~~~~~~ai~~~g~~pv~~d~~~~-~~~~d~~~l~~~i~~~tkaIi~~---h~~G~~~~---~~~i~~i~~~~-~i~vIeD 152 (376)
T d1mdoa_ 81 WVSTLNMIVLLGANPVMVDVDRD-TLMVTPEHIEAAITPQTKAIIPV---HYAGAPAD---LDAIYALGERY-GIPVIED 152 (376)
T ss_dssp CHHHHHHHHHTTCEEEEECBCTT-TCCBCHHHHHHHCCTTEEEECCB---CGGGCCCC---HHHHHHHHHHH-TCCBCEE
T ss_pred ccccccchhccccceeeeccccc-ccCCCHHHHHHhcCCCCeEEEEe---CCCCCccc---hhHHHHHHHhc-CceEEec
Confidence 99999999999999999999864 57799999999999999999865 46898888 88999999999 9999999
Q ss_pred cCCcccc-cCCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEcC-HHHHHHHHHHhhcc-------------
Q 014172 269 EIYEHII-YAPATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQF------------- 331 (429)
Q Consensus 269 eay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~~------------- 331 (429)
.+++... +.+. .. +..+ ..+.|| +|.++ +| ..|.++++ +++.+.++.+....
T Consensus 153 ~a~a~g~~~~~~---~~----g~~g--~~~~Sf~~~K~l~-~g-~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~ 221 (376)
T d1mdoa_ 153 AAHATGTSYKGR---HI----GARG--TAIFSFHAIKNIT-CA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGR 221 (376)
T ss_dssp CTTCTTCEETTE---ET----TSSS--EEEEECCTTSSSC-SS-SCEEEEESCHHHHHHHHHHTBTTEECC---------
T ss_pred cchhccCeeCCe---ec----cccc--CccccCCCcCCCC-CC-CCCEEEEechhHHHHHHhhcccCCcccccccccccc
Confidence 9998643 2211 11 1123 345566 58875 33 35777664 55666665543211
Q ss_pred -----------cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 332 -----------TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 332 -----------~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
....+.+..+.+...|. .+++..++.+++++.+.+.|++++++.+.
T Consensus 222 ~~~~~~~~~g~n~~~~~~~Aai~~~qL~-------~~~~~~~~r~~~~~~~~~~L~~~~~~~~~ 278 (376)
T d1mdoa_ 222 APQAEVLAPGYKYNLPDLNAAIALAQLQ-------KLDALNARRAAIAAQYHQAMADLPFQPLS 278 (376)
T ss_dssp --CCEESSCCCBCCCCHHHHHHHHHHHH-------THHHHHHHHHHHHHHHHHHHHTSSCEECC
T ss_pred cccccchhcccccccchhhhhhhhhhhh-------hhhHHHHHHhhhhhhhhhhcccccccccc
Confidence 12223333333333333 24556667777888888888887655443
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=4.7e-18 Score=164.60 Aligned_cols=291 Identities=17% Similarity=0.182 Sum_probs=183.4
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCC----------CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHH
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAG----------TLELRSAICHKLKEENGLSYTPDQILVSNGAKQS 167 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G----------~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 167 (429)
|.|+.+-. -++|+.+++++.+.+++.+.+ |... ..+.|+.+++++ | +++++|++++|+|++
T Consensus 3 iyld~a~~-~~~p~~v~ea~~~~~~~~~~n--p~~~~~~~~~~~~~~~~aR~~ia~l~----~--~~~~~i~~~~~~T~~ 73 (376)
T d1eg5a_ 3 VYFDNNAT-TRVDDRVLEEMIVFYREKYGN--PNSAHGMGIEANLHMEKAREKVAKVL----G--VSPSEIFFTSCATES 73 (376)
T ss_dssp EECBTTTC-CCCCHHHHHHHHHHHHTCCCC--TTCSSHHHHHHHHHHHHHHHHHHHHH----T--SCGGGEEEESCHHHH
T ss_pred EEEECccc-ccCCHHHHHHHHHHHHHcCCC--CccccHHHHHHHHHHHHHHHHHHHHc----C--CCCCcEEEECCHHHH
Confidence 45544332 245788999999988753221 1111 123456666665 4 578999999999999
Q ss_pred HHHHHHH----hcCCCCEEEEcCCCCCChHHHH---HHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCC
Q 014172 168 ILQAVLA----VCSPGDEVIIPAPFWVSYPEMA---RIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNP 240 (429)
Q Consensus 168 l~~~l~~----l~~~gd~Vlv~~p~y~~~~~~~---~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NP 240 (429)
+..++.. ...+|+.|++....|+.+.... +..|++++.+|++. ++.+|+++++++++++|++|++++++|+
T Consensus 74 l~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~--~~~id~~~l~~~i~~~t~lv~is~v~~~ 151 (376)
T d1eg5a_ 74 INWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDTFLVSIMAANNE 151 (376)
T ss_dssp HHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTEEEEEEESBCTT
T ss_pred HHhhhhcccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCC--CCeECHHHHHHhcCCCceEEEEECCccc
Confidence 9988764 3577899999888888766544 55699999999874 4569999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHH--HhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCH
Q 014172 241 TGSVYPKNLLDEIARIV--AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPK 318 (429)
Q Consensus 241 tG~~~~~~~l~~I~~~a--~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~ 318 (429)
||..++ ++++.+++ +.. ++++++|.++.. |..+..+.. .+..++++|++|++|.+|.+++|+.-..
T Consensus 152 tG~~~~---~~~i~~~~~~~~~-~~~~~vD~~q~~----g~~~~d~~~----~~~D~~~~s~~K~~gp~G~~~l~~~~~~ 219 (376)
T d1eg5a_ 152 VGTIQP---VEDVTRIVKKKNK-ETLVHVDAVQTI----GKIPFSLEK----LEVDYASFSAHKFHGPKGVGITYIRKGV 219 (376)
T ss_dssp TCBBCC---HHHHHHHHHHHCT-TCEEEEECTTTT----TTSCCCCTT----TCCSEEEEEGGGGTSCTTCEEEEECTTS
T ss_pred cceeee---ehhhhhhhhhccc-CceeEEEeeecc----ccccccccc----cCccceecccceeecCCCceeEEeccCc
Confidence 999999 55566655 344 789999999875 333333333 3456999999999998887666653321
Q ss_pred HHHHHHH---HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc---eEEE
Q 014172 319 HFVAACN---KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG---AFYL 392 (429)
Q Consensus 319 ~~~~~l~---~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~---~~~~ 392 (429)
.+...+. ..........+......+...... ...............+..+.+.|..... ....+.. ....
T Consensus 220 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 295 (376)
T d1eg5a_ 220 PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEI---AVEELSEAAKHMEKLRSKLVSGLMNLGA-HIITPLEISLPNTL 295 (376)
T ss_dssp CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHHHHHTTTC-EECSCTTSBCTTEE
T ss_pred ccCCcccCCCCcccccCCcccchhhhhHHHHhhc---cccchhhhhhhhhhhhhhhccccccccc-ccccccccccccee
Confidence 1110000 001111222334444444443332 1222334455556667777888776522 2221111 1123
Q ss_pred EEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 393 FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 393 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+.++. .++.++... ++++||.+
T Consensus 296 ~~~~~~------------~~~~~~~~~-L~~~gI~v 318 (376)
T d1eg5a_ 296 SVSFPN------------IRGSTLQNL-LSGYGIYV 318 (376)
T ss_dssp EEECTT------------CCHHHHHHH-HHHTTEEC
T ss_pred eeccCC------------CCHHHHHHH-HhhCCeEE
Confidence 344543 256677665 46668865
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.79 E-value=3.5e-17 Score=157.36 Aligned_cols=214 Identities=12% Similarity=0.196 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~ 210 (429)
..|.+.+++. .| .+..+++++|..|+..++.+++++||.|++++..|.+.... +...|.++.+++.
T Consensus 66 ~~LE~~la~L----Eg----g~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~-- 135 (397)
T d1y4ia1 66 DALEKKLAVL----ER----GEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-- 135 (397)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT--
T ss_pred HHHHHHHHHH----hC----CccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCC--
Confidence 3455555554 33 35678899999999999999999999999999999876544 4578999999874
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
-|++.+++++++++|+|++.+|.||+..+.+ +++|+++|+++ |+++++|..|.--.+ ..++ .
T Consensus 136 -----~d~~~~~~~i~~~Tklv~~Esp~NP~l~v~D---i~~i~~iA~~~-gi~~vvDnT~atP~~----~~Pl-----~ 197 (397)
T d1y4ia1 136 -----GKPEEIRAAMRPETKVVYIETPANPTLSLVD---IETVAGIAHQQ-GALLVVDNTFMSPYC----QQPL-----Q 197 (397)
T ss_dssp -----TSHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTT----CCGG-----G
T ss_pred -----CCHHHHHHhcCCCCcEEEecCCcccceeecc---cHHHHHHhhcC-CceEEecCcccCccc----Ccch-----h
Confidence 2799999999999999999999999999999 99999999999 999999999874111 1111 1
Q ss_pred CCceEEEeccChhccccc-ceeeEEEcCHHHHHHHH--HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~--~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
.+-.|++.|.+|.++-.+ .=.|.++++++.+..++ ..+...+.++++.....+..-|+. +.-+.++..++
T Consensus 198 ~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~T-------L~lRm~~~~~n 270 (397)
T d1y4ia1 198 LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKT-------LGIRMERHCEN 270 (397)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred cCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCc-------HHHHHHHHHHH
Confidence 355699999999996344 33566778888776543 344455777888887777776664 55666777888
Q ss_pred HHHHHHHhccCCCcee
Q 014172 368 RDFLVKSFGELEGVKM 383 (429)
Q Consensus 368 r~~l~~~L~~l~g~~~ 383 (429)
...+.+.|++.|.++.
T Consensus 271 A~~lA~~L~~hp~V~~ 286 (397)
T d1y4ia1 271 ALKIARFLEGHPSITR 286 (397)
T ss_dssp HHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHhCCCcCe
Confidence 8889999998877653
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=7.8e-18 Score=161.85 Aligned_cols=215 Identities=15% Similarity=0.174 Sum_probs=169.6
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~ 209 (429)
...|++.|++.- ..+..++++++..|+..++.+++++||.|++++..|.+....++ ..|.++.+++.
T Consensus 61 ~~~LE~~la~LE--------g~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~- 131 (392)
T d1gc0a_ 61 LNLLEARMASLE--------GGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM- 131 (392)
T ss_dssp HHHHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-
T ss_pred HHHHHHHHHHHh--------CCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc-
Confidence 446666666654 24578899999999999999999999999999999998776554 46999999874
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
-|++.+++++++++|+|++.+|.|||..+.+ +++|+++|+++ ++++++|..|.--.+. .++
T Consensus 132 ------~d~~~~~~ai~~~t~lv~~Esp~NP~l~v~D---i~~i~~ia~~~-g~~~vvDnT~atP~~~----~Pl----- 192 (392)
T d1gc0a_ 132 ------ADLQALEAAMTPATRVIYFESPANPNMHMAD---IAGVAKIARKH-GATVVVDNTYCTPYLQ----RPL----- 192 (392)
T ss_dssp ------TCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHGGG-TCEEEEECTTTHHHHC----CGG-----
T ss_pred ------cCHHHHHHhCCCCCeEEEecccccceeeecc---hHHHHHHHHhc-CCEEEEecCccCcccc----ChH-----
Confidence 2899999999999999999999999999999 99999999999 9999999999742211 111
Q ss_pred CCCceEEEeccChhccc-ccceeeEEEcCHHHHHHHH--HHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAM-TGWRLGYIAGPKHFVAACN--KIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~-~G~R~G~v~~~~~~~~~l~--~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
..+-.|++.|.+|.++- ...-.|.++++++.+..++ ..+...+..+++.....+..-|+. +..+.++..+
T Consensus 193 ~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~T-------L~lRm~~~~~ 265 (392)
T d1gc0a_ 193 ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKT-------LNLRMDRHCA 265 (392)
T ss_dssp GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred HhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhcccc-------HHHHHHHHHH
Confidence 23556999999999953 3355677888888877654 344556777888887777766664 5566677778
Q ss_pred HHHHHHHHhccCCCcee
Q 014172 367 RRDFLVKSFGELEGVKM 383 (429)
Q Consensus 367 ~r~~l~~~L~~l~g~~~ 383 (429)
+...+.+.|++.|.++.
T Consensus 266 nA~~lA~~L~~hp~V~~ 282 (392)
T d1gc0a_ 266 NAQVLAEFLARQPQVEL 282 (392)
T ss_dssp HHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHhCCCccE
Confidence 88889999988776653
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=4.2e-19 Score=166.41 Aligned_cols=278 Identities=15% Similarity=0.090 Sum_probs=174.9
Q ss_pred EcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCC
Q 014172 99 RLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSP 178 (429)
Q Consensus 99 ~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~ 178 (429)
+| .|++..+++|++++|+.+........|++..+..++|+.+++++. .++++|++|+|+|+++..++..++.+
T Consensus 3 ~f-~nd~~~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g------~~~~~v~~tsggtean~~a~~~~~~~ 75 (340)
T d1svva_ 3 SF-VNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLE------RPDADVHFISGGTQTNLIACSLALRP 75 (340)
T ss_dssp EC-SCSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHT------CTTSEEEEESCHHHHHHHHHHHHCCT
T ss_pred Cc-ccCCCCCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhC------CCcceEEEcCCHHHHHHHHHHHHhhh
Confidence 44 456667778899999998876656678777777788888888874 46679999999999999999999999
Q ss_pred CCEEEEcCCCCCChHHH--HHHcCCEEEEecCCCCCCCCCCHHHHHhhcc------cCCcEEEEcCCCCCccCCCCHHHH
Q 014172 179 GDEVIIPAPFWVSYPEM--ARIADATPVILPTRISENFLLDPKVLESKLT------EKSRLLILCSPSNPTGSVYPKNLL 250 (429)
Q Consensus 179 gd~Vlv~~p~y~~~~~~--~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~------~~~~~i~l~~p~NPtG~~~~~~~l 250 (429)
++.+++..+.+..+... ....+.....+.... . ..+.+....... .....++++.+.|.+|.+.+.+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (340)
T d1svva_ 76 WEAVIATQLGHISTHETGAIEATGHKVVTAPCPD--G-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQEL 152 (340)
T ss_dssp TEEEEEETTSHHHHSSTTHHHHTTCCEEEECCTT--S-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred ccccccccccceeeeecccccccceeeeeccccc--c-cccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHh
Confidence 99999998877665432 223344444443321 1 123333333221 123344555555667888899999
Q ss_pred HHHHHHHHhCCCeEEEEccCCcccccCCCC-CCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh
Q 014172 251 DEIARIVAKHPRLLVLSDEIYEHIIYAPAT-HTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS 329 (429)
Q Consensus 251 ~~I~~~a~~~~~i~vi~Deay~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~ 329 (429)
..+.+.|+++ +.+++.|++|......... ........ ....+...+..|.. .+.+.++................
T Consensus 153 ~~~~~~~~~~-g~~~~~d~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (340)
T d1svva_ 153 EDISASCKEH-GLYLFLDGARLASALSSPVNDLTLADIA--RLTDMFYIGATKAG--GMFGEALIILNDALKPNARHLIK 227 (340)
T ss_dssp HHHHHHHHHH-TCEEEEECTTHHHHHTSTTCCCCHHHHH--HHCSEEEEECTTTT--CSSCEEEEECSGGGCTTHHHHHH
T ss_pred hhhhcccccc-cceeeeeccceeeeeccccccccccccc--ccceeeecCCcccc--ccccccccccchhhhhhhhhhcc
Confidence 9999999999 9999999999754332211 11111111 12234444455544 44445666655544333332222
Q ss_pred cc-cCCCc-hHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecC
Q 014172 330 QF-TSGAS-SISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFS 397 (429)
Q Consensus 330 ~~-~~~~~-~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~ 397 (429)
.. ..... .....++...+. ........+...++++.+...|+.+ |+++..|..+++++++++
T Consensus 228 ~~~~~~~~~~~~~aa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~p~~~~~v~~~~~ 291 (340)
T d1svva_ 228 QRGALMAKGWLLGIQFEVLMK-----DNLFFELGAHSNKMAAILKAGLEAC-GIRLAWPSASNQLFPILE 291 (340)
T ss_dssp HTTCCCTTTHHHHHHHHHHTS-----TTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCCSSSEECBEEE
T ss_pred cccCccchhhHHHHHHHHHhh-----hhHHHHHHHHHHHHHhhhHHHHhcC-CCeeecCCCceEEEEeCC
Confidence 12 22222 222222223332 2334456677788888899999887 888887777777888875
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.76 E-value=7.7e-19 Score=175.25 Aligned_cols=289 Identities=13% Similarity=0.072 Sum_probs=180.9
Q ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCC-------EEEEcCCCCCCh
Q 014172 120 AIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGD-------EVIIPAPFWVSY 192 (429)
Q Consensus 120 ~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd-------~Vlv~~p~y~~~ 192 (429)
++..+...|+.+++..+|++.+++++ ..+.++++++|+++...++++++++|+ .++...+.|..+
T Consensus 63 ~~~~gd~~y~~~~~~~~le~~~a~l~--------g~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~ 134 (465)
T d1ax4a_ 63 AMITGDEAYAGSRNYYDLKDKAKELF--------NYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTT 134 (465)
T ss_dssp HHHTCCCCSSSCHHHHHHHHHHHHHH--------CCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHH
T ss_pred HHhhhhhhhccChHHHHHHHHHHHHH--------CCCEEEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhh
Confidence 34456678998888889999999986 357899999999999999999976553 345666666667
Q ss_pred HHHHHHcCCEEEEecCC--------CCCCCCCCHHHHHhhccc----CCcEEEEcCCCCCc-cCCCCHHHHHHHHHHHHh
Q 014172 193 PEMARIADATPVILPTR--------ISENFLLDPKVLESKLTE----KSRLLILCSPSNPT-GSVYPKNLLDEIARIVAK 259 (429)
Q Consensus 193 ~~~~~~~g~~~~~v~~~--------~~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPt-G~~~~~~~l~~I~~~a~~ 259 (429)
...+...|..++.++.. ....+.+|++.+++++++ .+.++++..++|.. |.+++.+++++|.++|++
T Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~ 214 (465)
T d1ax4a_ 135 AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ 214 (465)
T ss_dssp HHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHH
Confidence 77788899998877532 123467899999999864 23445556666654 467899999999999999
Q ss_pred CCCeEEEEccCCcccccC-------CCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHH--HHHHHHHHh--
Q 014172 260 HPRLLVLSDEIYEHIIYA-------PATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKH--FVAACNKIQ-- 328 (429)
Q Consensus 260 ~~~i~vi~Deay~~~~~~-------~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~--~~~~l~~~~-- 328 (429)
| |+++|.|+++...... +....+.......-....-+.||||..++.+++.|+++.+++ +........
T Consensus 215 ~-g~~l~~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 293 (465)
T d1ax4a_ 215 H-GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVP 293 (465)
T ss_dssp H-TCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHH
T ss_pred c-CCEEEEECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccc
Confidence 9 9999999998642210 000011111000000001134444544557888899987643 222222111
Q ss_pred ---hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCccCC-cc
Q 014172 329 ---SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYYGS-EA 404 (429)
Q Consensus 329 ---~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~~~-~~ 404 (429)
.....+.......++...+... ..+...++..++.+++.+.|+++ |+.+..+.++++++++....... ..
T Consensus 294 ~~~~~~~~~~~~~~~~a~~~~~~e~-----~~~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~ 367 (465)
T d1ax4a_ 294 MEGFVTYGGLAGRDMAAMVQGLEEG-----TEEEYLHYRIGQVKYLGDRLREA-GIPIQYPTGGHAVFVDCKKLVPQIPG 367 (465)
T ss_dssp HTCSTTTTTCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHHHT-TCCBCSSCCSSEEEEESTTTCTTSCG
T ss_pred cccCCCcchhhHHHHHHHhhhhHHh-----hhHHHHHHHHHHHHHHHHHHHhh-cCccccCCCcceeeeehhhhcCCCcc
Confidence 1111122333333333333321 11233444556678889999887 88888888888888776543211 11
Q ss_pred cCCCCCCChHHHHHHHHHhCCee
Q 014172 405 EGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 405 ~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.+ .....+..+++.+.||.
T Consensus 368 ~~----~~~~~~~~~ll~~~GI~ 386 (465)
T d1ax4a_ 368 DQ----FPAQAVINALYLESGVR 386 (465)
T ss_dssp GG----CHHHHHHHHHHHHHCEE
T ss_pred cc----chhHHHHHHHHHhcCce
Confidence 11 13566777777777875
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.76 E-value=5.6e-17 Score=155.49 Aligned_cols=213 Identities=14% Similarity=0.132 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~ 210 (429)
..|.+.+|+.- | .+..+++++|..|+. ++..++++||.|++..+.|.+....++ ..|.++.+++.
T Consensus 52 ~~le~~la~LE----~----~~~a~~fsSGMaAis-all~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~-- 120 (380)
T d1ibja_ 52 DALESLLAKLD----K----ADRAFCFTSGMAALS-AVTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-- 120 (380)
T ss_dssp HHHHHHHHHHH----T----CSEEEEESSHHHHHH-HHHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT--
T ss_pred HHHHHHHHHHc----C----CceEEehhhHHHHHH-HHHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc--
Confidence 45555555553 3 356788888899997 577889999999999999998776655 46888888764
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
.+++++++++++++|+|++.+|.||+..+.+ +++|+++|+++ |+++|+|..+.--. ....+ .
T Consensus 121 -----~~~~~~~~ai~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vVDnT~atP~-------~~~Pl--~ 182 (380)
T d1ibja_ 121 -----TKLDEVAAAIGPQTKLVWLESPTNPRQQISD---IRKISEMAHAQ-GALVLVDNSIMSPV-------LSRPL--E 182 (380)
T ss_dssp -----TSHHHHHHHCCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHTT-TCEEEEECTTTCTT-------TCCGG--G
T ss_pred -----chHHHHHHHhccCccEEEecccccccccccc---HHHHHHHHHHc-CCeEEeeccccccc-------ccccc--c
Confidence 3789999999999999999999999999999 99999999999 99999999987421 11111 1
Q ss_pred CCceEEEeccChhcccccc-eeeEEEcC-HHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTGW-RLGYIAGP-KHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~-R~G~v~~~-~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r 368 (429)
.+-+|++.|.+|.++-.|- =.|.++.+ +++.+.+.......+..+++.....+..-++. +..+.++..++.
T Consensus 183 ~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~lRm~~~~~nA 255 (380)
T d1ibja_ 183 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKT-------MALRIEKQQENA 255 (380)
T ss_dssp TTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHH
T ss_pred cCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchh-------hhhhHHHHHHHH
Confidence 3566999999999964443 34665554 66778888777777777888887777776664 566777778888
Q ss_pred HHHHHHhccCCCcee
Q 014172 369 DFLVKSFGELEGVKM 383 (429)
Q Consensus 369 ~~l~~~L~~l~g~~~ 383 (429)
..+.+.|++.|.++.
T Consensus 256 ~~lA~~L~~hp~V~~ 270 (380)
T d1ibja_ 256 RKIAMYLSSHPRVKK 270 (380)
T ss_dssp HHHHHHHHTCTTCCE
T ss_pred HHHHHHHHhCCCeeE
Confidence 889999998776643
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.2e-16 Score=153.24 Aligned_cols=215 Identities=15% Similarity=0.166 Sum_probs=166.3
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTR 209 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~ 209 (429)
...|.+.+++.- | .+..+++++|..|+..++.+++++||.|++.+..|.+.... +...|.++.+++.
T Consensus 52 ~~~le~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~- 122 (384)
T d1cs1a_ 52 RDVVQRALAELE----G----GAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ- 122 (384)
T ss_dssp HHHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-
T ss_pred HHHHHHHHHHHh----C----CCceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC-
Confidence 346666666654 2 45789999999999999999999999999999999876443 3445778777763
Q ss_pred CCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 210 ISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 210 ~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
.|.+.+++++.+++++||+.+|.|||..+.+ +++|+++|+++ |+++|+|..|.--.+ ..+ +
T Consensus 123 ------~d~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~i~~ia~~~-g~~~vVDNT~atP~~----~~P---l-- 183 (384)
T d1cs1a_ 123 ------GDEQALRAALAEKPKLVLVESPSNPLLRVVD---IAKICHLAREV-GAVSVVDNTFLSPAL----QNP---L-- 183 (384)
T ss_dssp ------TCHHHHHHHHHTCCSEEEEECSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTTT----CCG---G--
T ss_pred ------CCHHHHHhhccccccEEEEeccccccceecc---HHHHhhhhhhc-CcEEEEeccccCccc----ccc---c--
Confidence 3889999999999999999999999999999 99999999999 999999999963111 111 1
Q ss_pred CCCceEEEeccChhccccc-ceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G-~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
..+-.|++.|.+|.++-.| .=.|.+++ ++.+.+.+.......+.+.+++....+..-|+. +.-+.++..++
T Consensus 184 ~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~T-------L~lRm~~~~~n 256 (384)
T d1cs1a_ 184 ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRT-------LVPRMELAQRN 256 (384)
T ss_dssp GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred ccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccch-------hHHHHHHHHHH
Confidence 1355699999999996444 33465666 556667777777777777888877766666654 55666777888
Q ss_pred HHHHHHHhccCCCcee
Q 014172 368 RDFLVKSFGELEGVKM 383 (429)
Q Consensus 368 r~~l~~~L~~l~g~~~ 383 (429)
...+.+.|++.|.++.
T Consensus 257 A~~lA~~L~~hp~V~~ 272 (384)
T d1cs1a_ 257 AQAIVKYLQTQPLVKK 272 (384)
T ss_dssp HHHHHHHHTTCTTEEE
T ss_pred HHHHHHhcccCCceee
Confidence 8899999998877643
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.75 E-value=3.9e-16 Score=150.12 Aligned_cols=213 Identities=14% Similarity=0.161 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHH----HHcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMA----RIADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~ 210 (429)
..|.+.||+.. | .+..+++++|..|+..++.+++++||.|++....|.+....+ ...|.++..++.
T Consensus 70 ~~LE~~la~LE----g----g~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~-- 139 (398)
T d1qgna_ 70 VVLEEKISALE----G----AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDP-- 139 (398)
T ss_dssp HHHHHHHHHHH----T----CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECS--
T ss_pred HHHHHHHHHHh----C----CceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccc--
Confidence 45666666653 2 467899999999999999999999999999999998876554 456888888863
Q ss_pred CCCCCCCHHHH-HhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCC
Q 014172 211 SENFLLDPKVL-ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPG 289 (429)
Q Consensus 211 ~~~~~~d~e~l-~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~ 289 (429)
.+.+.. ++.+.+++++|++.+|.||+..+.+ +++|+++|+++ ++++|+|..+.--. .+..+
T Consensus 140 -----~~~~~~~~~~~~~~t~~v~~EspsNP~l~v~D---i~~ia~ia~~~-g~~~vVDnT~atP~-------~~~Pl-- 201 (398)
T d1qgna_ 140 -----ADVGALELALNQKKVNLFFTESPTNPFLRCVD---IELVSKLCHEK-GALVCIDGTFATPL-------NQKAL-- 201 (398)
T ss_dssp -----SCHHHHHHHHHHSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHT-TCEEEEECTTTCTT-------TCCTT--
T ss_pred -----cchhhhhhhhccccceEEEccCccccccccch---HHHHHHHHhhc-CCEEEecceeeccc-------cCCch--
Confidence 144444 4456789999999999999999999 99999999999 99999999986411 11111
Q ss_pred CCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 014172 290 MWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERR 368 (429)
Q Consensus 290 ~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r 368 (429)
..+-.|++.|.+|.++-.| +=.|.++.+++++..++......+.+.++.....+..-|+. +.-+.++..++.
T Consensus 202 ~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------L~lRm~~~~~nA 274 (398)
T d1qgna_ 202 ALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKT-------LHLRVQQQNSTA 274 (398)
T ss_dssp TTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGG-------HHHHHHHHHHHH
T ss_pred hhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchH-------HHHHHHHHHHHH
Confidence 2356699999999996444 33566778899999988888888888888887776666654 566777778888
Q ss_pred HHHHHHhccCCCce
Q 014172 369 DFLVKSFGELEGVK 382 (429)
Q Consensus 369 ~~l~~~L~~l~g~~ 382 (429)
..+.+.|++.|.++
T Consensus 275 ~~lA~~L~~hp~V~ 288 (398)
T d1qgna_ 275 LRMAEILEAHPKVR 288 (398)
T ss_dssp HHHHHHHHTCTTEE
T ss_pred HHHHHHHHhCCCee
Confidence 88999999887765
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.74 E-value=6.7e-17 Score=160.13 Aligned_cols=305 Identities=14% Similarity=0.086 Sum_probs=196.8
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC 176 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~ 176 (429)
+|||-......+..+ ++..++..+...|+.++...+|++.+++++ ..+.++++++|+.|+..++++++
T Consensus 44 ~iDl~sDs~t~am~~----~~~aa~~~GDd~Y~~dpt~~~lE~~~a~l~--------G~e~al~~~SGt~An~~a~~~l~ 111 (456)
T d1c7ga_ 44 YIDLLTDSGTNAMSD----KQWAGMMIGDEAYAGSENFYHLEKTVKELF--------GFKHIVPTHQGRGAENLLSQLAI 111 (456)
T ss_dssp SEECSCSSSCCCEEH----HHHHHTTSCCCCSSSCHHHHHHHHHHHHHH--------CCSEEEEESSHHHHHHHHHHHHC
T ss_pred eeEcccCCCcccchH----HHHHHHhccchhccCCchHHHHHHHHHHHh--------CCCeEEECCCHHHHHHHHHHHhc
Confidence 577765443322233 333333345567988888889999999987 45678999999999999999999
Q ss_pred CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC--------CCCCCCCHHHHHhhcccC----CcEEEEcCCCCCc-cC
Q 014172 177 SPGDEVIIPAPFWVSYPEMARIADATPVILPTRI--------SENFLLDPKVLESKLTEK----SRLLILCSPSNPT-GS 243 (429)
Q Consensus 177 ~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--------~~~~~~d~e~l~~~l~~~----~~~i~l~~p~NPt-G~ 243 (429)
++||+|+.... |......+...|+.++.+..+. ...+.+|++.|++.+++. +.++++.+++|+. |.
T Consensus 112 ~~Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~ 190 (456)
T d1c7ga_ 112 KPGQYVAGNMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQ 190 (456)
T ss_dssp CTTEEEEESSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB
T ss_pred CCCCeEecCcc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccc
Confidence 99999987665 4555666788899988776431 123568999999999753 3477889999875 68
Q ss_pred CCCHHHHHHHHHHHHhCCCeEEEEccCCcccc--c-----CCCCCCccccCCC-C-CCceEEEeccChhcccccceeeEE
Q 014172 244 VYPKNLLDEIARIVAKHPRLLVLSDEIYEHII--Y-----APATHTSFASLPG-M-WERTLTVNGFSKAFAMTGWRLGYI 314 (429)
Q Consensus 244 ~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~--~-----~~~~~~~~~~~~~-~-~~~~i~~~S~SK~~~~~G~R~G~v 314 (429)
+++.+++++|.++|++| |+.++.|+++.... + .+....++..+.. . ....++..|++|.++.++ .|++
T Consensus 191 ~~~~~~l~~i~~~a~~~-~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~i 267 (456)
T d1c7ga_ 191 PVSMANMRAVHEMASTY-GIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI--GGFL 267 (456)
T ss_dssp CCCHHHHHHHHHHHHHH-TCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS--CEEE
T ss_pred eecHHHHHHHHHHHHHc-CCEEEEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccc--eeEE
Confidence 89999999999999999 99999999975311 0 0111112211100 0 012266779999997443 3777
Q ss_pred EcC-HHHHHHHHHHhhcc-----cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCc
Q 014172 315 AGP-KHFVAACNKIQSQF-----TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQG 388 (429)
Q Consensus 315 ~~~-~~~~~~l~~~~~~~-----~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~ 388 (429)
+++ +++.+.++...... ..+.+.....++...+.... ..++ .++..++.+++.+.|.+. |+.+..|.+
T Consensus 268 ~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~~~~a~a~~l~e~~-~~~~----l~~r~~~~~~L~e~L~~~-g~~vv~p~g 341 (456)
T d1c7ga_ 268 CMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAM-QYEY----IEHRVKQVRYLGDKLREA-GVPIVEPTG 341 (456)
T ss_dssp EESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHT-CHHH----HHHHHHHHHHHHHHHHHT-TCCBCSSCC
T ss_pred EcCCHHHHHHHHHhccccCCCcccchhhHHHHHHHHHHHHHhc-CHHH----HHHHHHHHHHHHHHHHhc-cCCcccCCC
Confidence 765 55666665443211 11223333333333333211 1222 333345667788888887 888888999
Q ss_pred eEEEEEecCCccC-CcccCCCCCCChHHHHHHHHHhCCee
Q 014172 389 AFYLFIDFSTYYG-SEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 389 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
++.++++...... ..... ....+++..|+.++||.
T Consensus 342 ~~~v~vda~~~~~~i~~~~----~~~~~~~~~l~~~~GIr 377 (456)
T d1c7ga_ 342 GHAVFLDARRFCPHLTQDQ----FPAQSLAASIYMETGVR 377 (456)
T ss_dssp SSEEEEEHHHHCTTSCGGG----CHHHHHHHHHHHHHSEE
T ss_pred CcceeEechhhccCCCccc----ccHHHHHHHHHHHhCee
Confidence 9888886543211 01111 14677888888888885
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=9.2e-17 Score=155.92 Aligned_cols=294 Identities=16% Similarity=0.149 Sum_probs=197.2
Q ss_pred EEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcC
Q 014172 98 IRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCS 177 (429)
Q Consensus 98 i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~ 177 (429)
+-|+-|- .+.|+.|++++... ...+. +....++.+.+.+.+++.+|.+ ++..|++|.|+|+++++++..++.
T Consensus 21 ~l~~pGP--~~~~~~Vl~am~~~---~i~HR--s~~f~~i~~ea~~~l~~llg~~-~~~~ii~~gsgT~a~~~~i~~l~~ 92 (388)
T d1h0ca_ 21 LLLGPGP--SNLPPRIMAAGGLQ---MIGSM--SKDMYQIMDEIKEGIQYVFQTR-NPLTLVISGSGHCALEAALVNVLE 92 (388)
T ss_dssp EECSSSC--CCCCHHHHHHHTCC---CCCTT--SHHHHHHHHHHHHHHHHHHTCC-CSEEEEESSCHHHHHHHHHHHHCC
T ss_pred ccccCCC--CCCCHHHHHHhCcC---CCCCC--CHHHHHHHHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHhhc
Confidence 4455543 34578888876532 11222 1233455566666666667742 234689999999999999999999
Q ss_pred CCCEEEEcCCCCCChH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHH
Q 014172 178 PGDEVIIPAPFWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIA 254 (429)
Q Consensus 178 ~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~ 254 (429)
+|+.+++....+.+.. ..+...+..++.+..+. +..+|.+.+++.+. .+++++++++.+|.||.+.| +++|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~p---i~~i~ 167 (388)
T d1h0ca_ 93 PGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDP--GGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQP---LDGFG 167 (388)
T ss_dssp SSCCEEECBSSHHHHHHHHHHHHHC--CBCCBCCT--TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHH
T ss_pred cCCceeeecccceeeeeccccccccccccccccCC--ccccchHHHHHHhccCCcceEEEeeeeeccccccC---HHHHH
Confidence 9999999988776543 44566777776666543 34578888877664 58999999999999999999 99999
Q ss_pred HHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh------
Q 014172 255 RIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ------ 328 (429)
Q Consensus 255 ~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~------ 328 (429)
++|++| |+++++|.+++. +..+..+.. .+.++++.|..|.++.+ ..+|+++.++..++.+....
T Consensus 168 ~~~~~~-g~~~~vD~~qs~----g~~~~d~~~----~~~D~~~~s~~K~~~gp-~g~~~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
T d1h0ca_ 168 ELCHRY-KCLLLVDSVASL----GGTPLYMDR----QGIDILYSGSQKALNAP-PGTSLISFSDKAKKKMYSRKTKPFSF 237 (388)
T ss_dssp HHHHTT-TCEEEEECTTTT----TTSCCCTTT----TTCSEEEEESSSTTCCC-TTCEEEEECHHHHHHHTTCSSCCSCS
T ss_pred HHhhcc-cccceecccccc----ccccccccc----cccceecccccccccCC-CceEEEeecHHHHHhhhhcccccccc
Confidence 999999 999999999875 222222222 35558899999999633 34788888887776553211
Q ss_pred -----------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC----
Q 014172 329 -----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ---- 387 (429)
Q Consensus 329 -----------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~---- 387 (429)
......++.....+...++..- .+..++.+.++.++..+++++.+... |+....++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~--~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~~~~~~~r 314 (388)
T d1h0ca_ 238 YLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALI--AEQGLENSWRQHREAAAYLHGRLQAL-GLQLFVKDPALR 314 (388)
T ss_dssp TTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGB
T ss_pred ccccchhhhhhhhccccccccccccHHHHHHHHHHHHHH--HHhccccccccccchhHHHHHHHhhc-CcccccCCHHHc
Confidence 1112234555555555555430 12236677777788888888888876 44333222
Q ss_pred ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
....+.+.+|+. .+..++..+|++++||.+
T Consensus 315 s~~i~~~~~p~~-----------~~~~~~~~~L~~~~gI~v 344 (388)
T d1h0ca_ 315 LPTVTTVAVPAG-----------YDWRDIVSYVIDHFDIEI 344 (388)
T ss_dssp CTTEEEEECCTT-----------CCHHHHHHHHHHHHCEEC
T ss_pred CCeEEEEECCCC-----------CCHHHHHHHHHhcCCEEE
Confidence 222356777653 378999999999989875
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.71 E-value=2.2e-15 Score=145.49 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc-CCC--CEEEEcCC
Q 014172 111 VLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC-SPG--DEVIIPAP 187 (429)
Q Consensus 111 ~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~-~~g--d~Vlv~~p 187 (429)
++-++++.+.+++++...+ +-..+|++.++++++ .+.++.++++|.|+.++++++- .+| |+|+++..
T Consensus 12 ~~~~~~v~~~l~~~~~~~G--~~v~~fE~~~~~~~g--------~k~ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~ 81 (371)
T d2fnua1 12 KEDKKAVLEVLNSKQLTQG--KRSLLFEEALCEFLG--------VKHALVFNSATSALLTLYRNFSEFSADRNEIITTPI 81 (371)
T ss_dssp HHHHHHHHHHHTSSCCSSS--HHHHHHHHHHHHHHT--------CSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSS
T ss_pred HHHHHHHHHHHcCCCccCC--HHHHHHHHHHHHHHC--------cCeEEEEecHHHHHHHHHHHhcccCCCCCeeecccc
Confidence 5567788888877543332 245788888888863 3578999999999999999984 344 58999999
Q ss_pred CCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEE
Q 014172 188 FWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLS 267 (429)
Q Consensus 188 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~ 267 (429)
+|.+...++...|++++.++++++. .++.+.+++.+++++++|+++ +..|...+ +++|.++|+++ +++||+
T Consensus 82 t~~a~~~ai~~~G~~pv~vDi~~~~--~~~~~~~~~~~~~~t~avi~v---h~~G~~~~---~~~i~~~~~~~-~i~lIE 152 (371)
T d2fnua1 82 SFVATANMLLESGYTPVFAGIKNDG--NIDELALEKLINERTKAIVSV---DYAGKSVE---VESVQKLCKKH-SLSFLS 152 (371)
T ss_dssp SCTHHHHHHHHTTCEEEECCBCTTS--SBCGGGSGGGCCTTEEEEEEE---CGGGCCCC---HHHHHHHHHHH-TCEEEE
T ss_pred cccccceeeeccCcccccccccccc--cccchhhhhhccchhhccccc---cccccccc---ccccccccccc-chhhcc
Confidence 9999999999999999999997644 357788999999999999865 45788888 88999999999 999999
Q ss_pred ccCCccccc-CCCCCCccccCCCCCCceEEEecc--ChhcccccceeeEEEcC-HHHHHHHHHHhhc-------------
Q 014172 268 DEIYEHIIY-APATHTSFASLPGMWERTLTVNGF--SKAFAMTGWRLGYIAGP-KHFVAACNKIQSQ------------- 330 (429)
Q Consensus 268 Deay~~~~~-~~~~~~~~~~~~~~~~~~i~~~S~--SK~~~~~G~R~G~v~~~-~~~~~~l~~~~~~------------- 330 (429)
|.+++.... .+.. ...+ ..+.+.|| .|.++ +|- .|.++++ +++.+.+......
T Consensus 153 Daaqa~Ga~~~~~~---~G~~-----g~~~~~Sf~~~K~l~-~g~-GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 222 (371)
T d2fnua1 153 DSSHALGSEYQNKK---VGGF-----ALASVFSFHAIKPIT-TAE-GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVK 222 (371)
T ss_dssp ECTTCTTCEETTEE---TTSS-----SSEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEES
T ss_pred chhhccCceecccc---CCcc-----ccccccccccccccc-ccc-ceEEEeechhhhhhcccccccccccccccccccc
Confidence 999987442 2211 1111 12556676 68886 443 5777764 5777777655322
Q ss_pred ---ccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 331 ---FTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 331 ---~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
+.+.++.+..+.+...|+. +++..++-+++.+++.+.|++++++...
T Consensus 223 ~~G~n~r~sel~Aaigl~qL~~-------l~~~~~~R~~~~~~y~~~l~~~~~~~~~ 272 (371)
T d2fnua1 223 SIGHNFRLNEIQSALGLSQLKK-------APFLMQKREEAALTYDRIFKDNPYFTPL 272 (371)
T ss_dssp SCCCBCCCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHTTCSSEEES
T ss_pred cccccccccchhhhhhhhhhhh-------ccchhhhhhhhhhhhccccccccccccc
Confidence 1223455444444444443 4455555566777778888887776654
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.71 E-value=5.8e-16 Score=147.05 Aligned_cols=300 Identities=14% Similarity=0.123 Sum_probs=205.6
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCC------CC-CCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFT------RY-TPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~------~Y-~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
+.|+|-..++.. ++.+.+++...+.+.+. +| +...-..++.+...++..+.||. ..-+|-.. +++.+.
T Consensus 24 ~~l~LiaSEN~~--S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a--~~anVqp~-SGs~An 98 (405)
T d1kl1a_ 24 AKIELIASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGA--EHANVQPH-SGAQAN 98 (405)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCC--SEEECCCS-SHHHHH
T ss_pred cCceEeccCCcC--CHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCC--Ccceeecc-CchHHH
Confidence 479998888774 57777777766644221 12 21222344555555667777773 22233333 555666
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHH-----HHHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEM-----ARIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~-----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~p~NPtG 242 (429)
..++.+|++|||+|+..++...++... ......+.+.++++++ ++.+|.+++++.+.. ++|+|++-.-.+|
T Consensus 99 ~av~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~-~~~ID~d~l~~~a~~~kPklIi~G~S~y~-- 175 (405)
T d1kl1a_ 99 MAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE-THVIDYDDVREKARLHRPKLIVAAASAYP-- 175 (405)
T ss_dssp HHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCSEEEECCSSCC--
T ss_pred HHHHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccchh-cccccHHHHHHHHHhhCcceEEecccccc--
Confidence 779999999999999999876665432 2233468888888764 467999999998864 8999887444443
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV 321 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~ 321 (429)
..++ ++++.++|++. |.+++.|-+|.. ++-++.-+.++ .. -.++..|.+|+| +|.|.|.+++++++.
T Consensus 176 r~~d---~~~~reIad~v-ga~l~~D~aH~~GLIa~g~~~~P~-~~-----aDvvt~tThKtl--rGPrgg~I~~~~~~~ 243 (405)
T d1kl1a_ 176 RIID---FAKFREIADEV-GAYLMVDMAHIAGLVAAGLHPNPV-PY-----AHFVTTTTHKTL--RGPRGGMILCQEQFA 243 (405)
T ss_dssp SCCC---HHHHHHHHHHH-TCEEEEECTTTHHHHHTTSSCCST-TT-----CSEEEEESSSTT--CCCSCEEEEECHHHH
T ss_pred cccC---hHHHHHHHhhh-CCEEecchhhHhhhhhhhhcCChh-hh-----hhheeccccccc--cCCCCceEEecchhH
Confidence 3456 88999999999 999999999874 44444333333 22 238889999998 799999999999999
Q ss_pred HHHHHHhhcccCCCchHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC-CceEEEEEecCCc
Q 014172 322 AACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP-QGAFYLFIDFSTY 399 (429)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~q~aa~~-~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p-~~~~~~~~~l~~~ 399 (429)
+.+.+...+...+.+.....|+.+ ++.+. .....+...+...++.+.|.+.|.+. |+.+... ..+..+|+++...
T Consensus 244 ~~i~~avfPg~qggp~~~~iAa~Aval~Ea--~~~~fk~Ya~qvv~NAkaLa~~L~~~-G~~vv~ggTd~H~vlvdl~~~ 320 (405)
T d1kl1a_ 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNAKRLASALQNE-GFTLVSGGTDNHLLLVDLRPQ 320 (405)
T ss_dssp HHHHHHHTTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHhhhCcccccCcchhHHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHhcC-CceeecCCCccceeecccccc
Confidence 998887766666555555544443 33321 13456778888889999999999997 9988742 3355688998643
Q ss_pred cCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 400 YGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
......++++|++.||.++
T Consensus 321 -----------~~~g~~ae~~Le~agI~~N 339 (405)
T d1kl1a_ 321 -----------QLTGKTAEKVLDEVGITVN 339 (405)
T ss_dssp -----------TCCHHHHHHHHHHHTEECE
T ss_pred -----------CCcHHHHHHHHHHcCeEEc
Confidence 1234666777888899764
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=1.1e-15 Score=145.80 Aligned_cols=300 Identities=15% Similarity=0.077 Sum_probs=203.0
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCC------CCCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFT------RYTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~------~Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
+.|+|-..++.. ++.+.+++...+.+.+. +|.. ..-..++.+...++..+.+|. ...+|-. .+++.+.
T Consensus 27 ~~i~LiaSEN~~--S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a--~~anVqp-~SGs~AN 101 (416)
T d1dfoa_ 27 EHIELIASENYT--SPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGA--DYANVQP-HSGSQAN 101 (416)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTC--SEEECCC-SSHHHHH
T ss_pred cCceEecCcccC--CHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCC--Ccceeec-ccCccHH
Confidence 469998888774 57777777766654221 2222 112234444444666667773 2223333 5566677
Q ss_pred HHHHHHhcCCCCEEEEcCCCCCChHHHH-----HHcCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCcc
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWVSYPEMA-----RIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTG 242 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~~~~~~~-----~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG 242 (429)
..++.++++|||+|+..+..+.++...- .....+.+.++++. +..+|.+++++... .++|+|++..-.+ .
T Consensus 102 ~av~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~--~~~IDyd~l~~~a~~~kPklIi~G~S~y--~ 177 (416)
T d1dfoa_ 102 FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA--TGHIDYADLEKQAKEHKPKMIIGGFSAY--S 177 (416)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS--SSSBCHHHHHHHHHHHCCSEEEEECSSC--C
T ss_pred HHHHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC--ccCccHHHHHHHHHHhccceEEeccccc--c
Confidence 7799999999999999999888765422 22235777777764 34599999998875 4899998743333 3
Q ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcC---HH
Q 014172 243 SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGP---KH 319 (429)
Q Consensus 243 ~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~---~~ 319 (429)
..++ ++++.++|++. |.+++.|.+|......+..+++.... -.++.+|.+|+| +|.|.|.++++ ++
T Consensus 178 r~~d---~~~~reiad~v-ga~l~~D~aH~~GLIa~g~~~sP~~~-----aDvvt~tThKtl--rGPrggiI~~~~~~~~ 246 (416)
T d1dfoa_ 178 GVVD---WAKMREIADSI-GAYLFVDMAHVAGLVAAGVYPNPVPH-----AHVVTTTTHKTL--AGPRGGLILAKGGSEE 246 (416)
T ss_dssp SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCCTTT-----SSEEEEESSSTT--CCCSCEEEEESSCCHH
T ss_pred cccC---HHHHHHHHHhc-CceEEcchhhhhcceeccccCCcccc-----cceeeeehhhcc--cCCCceEEEeccchHh
Confidence 5667 89999999999 99999999987433333233332222 238999999998 79999999985 57
Q ss_pred HHHHHHHHhhcccCCCchHHHHHH-HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec-CCceEEEEEecC
Q 014172 320 FVAACNKIQSQFTSGASSISQKAG-VAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE-PQGAFYLFIDFS 397 (429)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~q~aa-~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~-p~~~~~~~~~l~ 397 (429)
+.+.+.+...+...+.+.....++ ..++.+. .....+...++..++.+.|.+.|.+. |++++. ...+..+++++.
T Consensus 247 ~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea--~~~~fk~Y~~qvv~NA~~La~~L~~~-G~~iv~ggTdnHlvlvdl~ 323 (416)
T d1dfoa_ 247 LYKKLNSAVFPGGQGGPLMHVIAGKAVALKEA--MEPEFKTYQQQVAKNAKAMVEVFLER-GYKVVSGGTDNHLFLVDLV 323 (416)
T ss_dssp HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHT-TCEEGGGSCSSSEEEEECG
T ss_pred HHHHHHhhhCcccccCccHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHhC-CcccccCCCCCceeEEEec
Confidence 788887766666555555454444 3344431 23456788888899999999999998 998873 334566889986
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+. .-+...++++|++.||.++
T Consensus 324 ~~-----------~~~G~~a~~~Le~~gI~~N 344 (416)
T d1dfoa_ 324 DK-----------NLTGKEADAALGRANITVN 344 (416)
T ss_dssp GG-----------TCCHHHHHHHHHHTTEECE
T ss_pred cc-----------CCCHHHHHHHHHHcCeEEe
Confidence 43 1244666677888899874
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.70 E-value=4.3e-15 Score=143.03 Aligned_cols=215 Identities=13% Similarity=0.155 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~ 210 (429)
..|.+.|++. .| .+..+++++|..|+..++.+++++||.|++.+..|.+... .+...|.++.+++..
T Consensus 62 ~~le~~la~L----Eg----~~~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~~~d~~- 132 (394)
T d1e5ea_ 62 SNLEGKIAFL----EK----TEACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA- 132 (394)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-
T ss_pred HHHHHHHHHH----hC----CcceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeeeccCCC-
Confidence 3455555554 33 4578899999999999999999999999999999976543 456789999999752
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
|++.+++++++++++|++.+|.||+..+.+ ++++++.++++.++++|+|..+.--. ....+ .
T Consensus 133 ------d~~~~~~~i~~~t~lv~~Etp~NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~-------~~~Pl--~ 194 (394)
T d1e5ea_ 133 ------IPGEVKKHMKPNTKIVYFETPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPM-------ITNPV--D 194 (394)
T ss_dssp ------STTHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTT-------TCCGG--G
T ss_pred ------CHHHHHHhhcccccEEEEeccCCcceeeeh---hhhhhhccccccCeEEEecCcccCcc-------cCCch--h
Confidence 778999999999999999999999999999 88888877653289999999987421 11111 1
Q ss_pred CCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH--hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
.+-.|++.|.+|.++-.+ +-.|.++++.+.+...+.. +...+.++++.....+..-|+. +.-+.++..++
T Consensus 195 ~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~T-------L~lRm~r~~~n 267 (394)
T d1e5ea_ 195 FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLST-------LNIRMKAESEN 267 (394)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred cCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchh-------HHHHHHHHHHH
Confidence 355699999999995344 4456677888877665432 3345666777877766666654 56677778889
Q ss_pred HHHHHHHhccCCCcee
Q 014172 368 RDFLVKSFGELEGVKM 383 (429)
Q Consensus 368 r~~l~~~L~~l~g~~~ 383 (429)
...+.+.|++.|.++.
T Consensus 268 A~~lA~~L~~hp~V~~ 283 (394)
T d1e5ea_ 268 AMKVAEYLKSHPAVEK 283 (394)
T ss_dssp HHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHhhcCCccE
Confidence 9999999999877643
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.70 E-value=2.7e-15 Score=145.09 Aligned_cols=215 Identities=14% Similarity=0.136 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~ 210 (429)
..|.+.|++.- | .+..+++++|..|+..++.+++++||.|+++...|.+.... +...|.++.+++..
T Consensus 61 ~~LE~~la~LE----~----~~~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~- 131 (421)
T d2ctza1 61 DVLEKRLAALE----G----GKAALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSRE- 131 (421)
T ss_dssp HHHHHHHHHHH----T----CSEEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTT-
T ss_pred HHHHHHHHHHh----C----CCeEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhccccceecccc-
Confidence 35555555553 3 35788999999999999999999999999999999876654 45789999888642
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
-+.+..++.+++++++||+.+|.|||..+.+ +++|+++|+++ |+++|+|..++.- ++..-+-.
T Consensus 132 -----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~D---i~~i~~iA~~~-g~~~vvDnT~a~t--------P~~~~Pl~ 194 (421)
T d2ctza1 132 -----ERPEEFLALTDEKTRAWWVESIGNPALNIPD---LEALAQAAREK-GVALIVDNTFGMG--------GYLLRPLA 194 (421)
T ss_dssp -----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHH-TCEEEEECGGGGG--------GTSCCGGG
T ss_pred -----cCcchhccccCCCceEEEEcCCCcceeEecc---hHHHHHHHHhc-CCceEeccccccc--------ceeccccc
Confidence 1466777788899999999999999999999 99999999999 9999999998620 11111111
Q ss_pred CCceEEEeccChhccccccee-eEEEcCHH-------------------------------HHH-HHHHHhhcccCCCch
Q 014172 291 WERTLTVNGFSKAFAMTGWRL-GYIAGPKH-------------------------------FVA-ACNKIQSQFTSGASS 337 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G~R~-G~v~~~~~-------------------------------~~~-~l~~~~~~~~~~~~~ 337 (429)
.+-.|++.|.+|.++-.|--+ |.++...+ ++. .........+.++++
T Consensus 195 ~GaDiVvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP 274 (421)
T d2ctza1 195 WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGP 274 (421)
T ss_dssp GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCH
T ss_pred cCCcEEEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCH
Confidence 355699999999997555554 45554321 111 111223345667888
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCce
Q 014172 338 ISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVK 382 (429)
Q Consensus 338 ~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~ 382 (429)
.....+..-|+. +.-+.++..++...+.+.|++.|.++
T Consensus 275 ~~a~l~~rgl~T-------L~lRm~~~~~nA~~vA~~L~~hp~V~ 312 (421)
T d2ctza1 275 FEAWVVLLGMET-------LSLRAERHVENTLHLAHWLLEQPQVA 312 (421)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred HHHHHHhcCCcc-------hhhHHHHHHHHHHHHHhhhccCCCee
Confidence 887777666654 55667777888888999999887764
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=4.6e-15 Score=142.69 Aligned_cols=215 Identities=13% Similarity=0.151 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~ 210 (429)
..|.+.+++. .| .+..+++++|..|+..++.+++++||.|++....|.+....++ ..|.++..++.
T Consensus 61 ~~le~~la~L----Eg----~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~~~d~-- 130 (391)
T d1cl1a_ 61 FSLQQAMCEL----EG----GAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDP-- 130 (391)
T ss_dssp HHHHHHHHHH----HT----CSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECT--
T ss_pred HHHHHHHHHH----hC----CccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccccccC--
Confidence 3455555554 33 4678999999999999999999999999999999998765544 56889888874
Q ss_pred CCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh--CCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 211 SENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK--HPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 211 ~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~--~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
.|.+.+++++++++++|++.+|.||+..+.+ +++|+++|++ + |+++|+|..+.-..+ ...+
T Consensus 131 -----~d~~~~~~~i~~~t~~i~~EtpsNP~l~v~D---i~~i~~~a~~~~~-g~~~vVDnT~atP~~-------~~Pl- 193 (391)
T d1cl1a_ 131 -----LIGADIVKHLQPNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVP-DAIIMIDNTWAAGVL-------FKAL- 193 (391)
T ss_dssp -----TCGGGGGGTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCT-TCEEEEECTTTTTTS-------SCGG-
T ss_pred -----ccccccccccccccceeeecccCcccccccc---cHHHHHHHHhccC-CcEEEEeccccchhh-------hccc-
Confidence 2788999999999999999999999999999 8888888855 6 899999999974221 1111
Q ss_pred CCCCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
..+-+|++.|.+|.++-.| .=.|.++.+++....+.........+.++.....+..-|+. +.-+.++..++
T Consensus 194 -~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~T-------L~lR~~~~~~n 265 (391)
T d1cl1a_ 194 -DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRT-------LGVRLRQHHES 265 (391)
T ss_dssp -GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred -ccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchh-------HHHHHHHHHHH
Confidence 1355699999999996333 34577778888888888777777777888776666655554 55666777888
Q ss_pred HHHHHHHhccCCCceee
Q 014172 368 RDFLVKSFGELEGVKMS 384 (429)
Q Consensus 368 r~~l~~~L~~l~g~~~~ 384 (429)
...+.+.|++.|.++.+
T Consensus 266 A~~vA~~L~~hp~V~~V 282 (391)
T d1cl1a_ 266 SLKVAEWLAEHPQVARV 282 (391)
T ss_dssp HHHHHHHHHTCTTEEEE
T ss_pred HHHHHHHHHhccccccc
Confidence 88899999988776543
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.70 E-value=1.1e-15 Score=144.26 Aligned_cols=213 Identities=15% Similarity=0.153 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHH----HHHHcCCEEEEecCCCC
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPE----MARIADATPVILPTRIS 211 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~ 211 (429)
.|.+.+|+.- ..+..+++++|..|+..++.+++++||.|+++...|.+... .++..|.++.+++..
T Consensus 2 aLE~~la~Le--------g~~~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~-- 71 (331)
T d1pffa_ 2 ALEGKIAKLE--------HAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA-- 71 (331)
T ss_dssp HHHHHHHHHH--------TCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT--
T ss_pred HHHHHHHHHh--------CCCeEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc--
Confidence 4677777764 34678999999999999999999999999999999977543 456789999998752
Q ss_pred CCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHH-HhCCCeEEEEccCCcccccCCCCCCccccCCCC
Q 014172 212 ENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIV-AKHPRLLVLSDEIYEHIIYAPATHTSFASLPGM 290 (429)
Q Consensus 212 ~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a-~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~ 290 (429)
|++.+++++++++++|++.+|.||+..+.+ ++++++++ +++ ++++|+|..+.-..+- ..+ .
T Consensus 72 -----d~~~~~~~i~~~t~~i~~Es~~np~~~v~d---~~~~~~~~a~~~-~~~~vVDnT~atp~~~-------~pl--~ 133 (331)
T d1pffa_ 72 -----VPGNIEKHLKPNTRIVYFETPANPTLKVID---IEDAVKQARKQK-DILVIVDNTFASPILT-------NPL--D 133 (331)
T ss_dssp -----STTHHHHTCCTTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSS-SCEEEEECTTTHHHHC-------CGG--G
T ss_pred -----chhhHhhhcccccceeeeeccccccccccc---chhhhhhhhccc-CceEEeeccccccccc-------ccc--c
Confidence 789999999999999999999999999999 77788775 567 8999999999742211 111 1
Q ss_pred CCceEEEeccChhccccc-ceeeEEEcCHHHHHHHHHH--hhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 014172 291 WERTLTVNGFSKAFAMTG-WRLGYIAGPKHFVAACNKI--QSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRER 367 (429)
Q Consensus 291 ~~~~i~~~S~SK~~~~~G-~R~G~v~~~~~~~~~l~~~--~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~ 367 (429)
.+-.|++.|.+|.++-.| .=.|.++++++........ ....+.++++.....+..-++. +..+.++..++
T Consensus 134 ~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~T-------l~~Rm~~~~~n 206 (331)
T d1pffa_ 134 LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLT-------LDMRVKRAAEN 206 (331)
T ss_dssp GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 345599999999995333 4457777887766554432 3334556777766665555543 66677778888
Q ss_pred HHHHHHHhccCCCcee
Q 014172 368 RDFLVKSFGELEGVKM 383 (429)
Q Consensus 368 r~~l~~~L~~l~g~~~ 383 (429)
...+.+.|++.|.++.
T Consensus 207 A~~lA~~L~~hp~V~~ 222 (331)
T d1pffa_ 207 AQKVAEFLHEHKAVKK 222 (331)
T ss_dssp HHHHHHHHHHCTTCCC
T ss_pred HHHHHHhhhhCCcEEe
Confidence 8889999998877643
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.69 E-value=5.7e-16 Score=152.73 Aligned_cols=262 Identities=14% Similarity=0.139 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC-CC
Q 014172 136 ELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVC--SPGDEVIIPAPFWVSYPEMARIADATPVILPTRI-SE 212 (429)
Q Consensus 136 ~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~ 212 (429)
.+...+..++.+..|. +.....+..|+++++.+++.+.. .+++.|+++.-.|+++...+...|++++.++..+ ++
T Consensus 113 ~~~~~~~~~~~~~~g~--~~~~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~ 190 (434)
T d2z67a1 113 ALTNKILESFFKQLGL--NVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGD 190 (434)
T ss_dssp HHHHHHHHHHHHHTTC--CCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETT
T ss_pred HHHHHHHHHHHHhcCC--CcceeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCC
Confidence 3444444445555663 33355556677777777777663 3789999999999999999999999999987533 33
Q ss_pred CCCCCHHHHHhhccc-----CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc-cCCCCCCcccc
Q 014172 213 NFLLDPKVLESKLTE-----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSFAS 286 (429)
Q Consensus 213 ~~~~d~e~l~~~l~~-----~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~~~ 286 (429)
.+.+|+++|++++++ ++.+|++.+|++++|.+.+ +++|+++|++| |+++++|++|+... +.+.......
T Consensus 191 ~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~---l~~i~~~~~~~-~~~l~vD~a~g~~~~~~~~~~~~~~- 265 (434)
T d2z67a1 191 RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENY-DIPHIINGAYAIQNNYYLEKLKKAF- 265 (434)
T ss_dssp EEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHHH-
T ss_pred ccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC---HHHHHHHHHHh-CCeEEEeccchhhhhhccccccccc-
Confidence 467999999999964 5667788999999999999 99999999999 99999999997532 1111111111
Q ss_pred CCCCCCceEEEeccChhcccccceeeEEE-cCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 014172 287 LPGMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFR 365 (429)
Q Consensus 287 ~~~~~~~~i~~~S~SK~~~~~G~R~G~v~-~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~ 365 (429)
..+..+++.|++|.++ .+...|++. .++++++.+.+.........+.....++...+. .+.+....++..
T Consensus 266 ---~~~~D~~~~s~hK~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~-----~~g~~~~~~~~~ 336 (434)
T d2z67a1 266 ---KYRVDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMG-----SKNYLELVKNQK 336 (434)
T ss_dssp ---TSCCSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred ---cCCcceEEEcCccccc-cCCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHH-----HhcchhHHHHHH
Confidence 1244588999999987 444456665 456677666554333333233333333333332 345566666677
Q ss_pred HHHHHHHHHhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 366 ERRDFLVKSFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 366 ~~r~~l~~~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
++.+++.+.|+++ .|..+..+.......+.+. .+..++...|.++ ||.
T Consensus 337 ~~a~~l~~~L~~l~~~~g~~ll~~~~~~~~~~~~~-------------~~~~~l~~~L~~~-gI~ 387 (434)
T d2z67a1 337 NSKKLLDELLNDLSKKTGGKFLDVESPIASCISVN-------------SDPVEIAAKLYNL-RVT 387 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCBCCCCCSSEEEEECS-------------SCHHHHHHHHHHT-TEE
T ss_pred HHHHHHHHHHHHhhhhcCceecCCCCCceeeeecC-------------CCHHHHHHHHHHc-CCe
Confidence 7777777777664 3555554433332333332 2678888888766 775
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.69 E-value=4.8e-16 Score=151.56 Aligned_cols=300 Identities=13% Similarity=0.105 Sum_probs=186.4
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCC----CCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPN----AGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQA 171 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~----~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~ 171 (429)
+.|.|+.+--. +.|..+.+++.+.+.+...+.... ....++.+.+.+.+.+..| .++++|++|.++|++++.+
T Consensus 27 ~~iYLd~as~g-~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg--a~~~ei~~~~~~T~~~~~~ 103 (404)
T d1qz9a_ 27 GVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG--ARDGEVVVTDTTSINLFKV 103 (404)
T ss_dssp TCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT--CCTTSEEECSCHHHHHHHH
T ss_pred CCEEcCCcccc-cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC--CCCCcEEEecCchHHHHHH
Confidence 47888877644 246788888888876533222110 1112333444444444445 6889999999999999877
Q ss_pred HHHh------cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 172 VLAV------CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 172 l~~l------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
+... ..+|+.|++.+-.+.+........+.++..++.... ...+++.++++++++|++|.+++.+|.||..+
T Consensus 104 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~T~lV~i~~v~~~tG~~~ 181 (404)
T d1qz9a_ 104 LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLR--LVDSPEELPQAIDQDTAVVMLTHVNYKTGYMH 181 (404)
T ss_dssp HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEE--EESSGGGHHHHCSTTEEEEEEESBCTTTCBBC
T ss_pred hhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceecc--ccccchhHHHhcCCCceEEEEeccccccccee
Confidence 6532 467888888887777654444433344333333222 23688999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHH
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACN 325 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~ 325 (429)
| +++|+++|+++ ++++++|.++.. |..+..+.. .+.++++.|.+|.+..+...+|+++.++.+.+.+.
T Consensus 182 p---v~~i~~~~~~~-~~~~~vD~~q~~----g~~~~~~~~----~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~ 249 (404)
T d1qz9a_ 182 D---MQALTALSHEC-GALAIWDLAHSA----GAVPVDLHQ----AGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 249 (404)
T ss_dssp C---HHHHHHHHHHH-TCEEEEECTTTT----TTSCCCHHH----HTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred c---HHHHhcccccc-ccceeEEeeccc----ccccccccc----ccceEEEEechhhcccCCceEEEEEechhhhhhCC
Confidence 9 99999999999 999999999886 332333333 24458899999988534444677777766544321
Q ss_pred HH-----------------------hhcccCCCchHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 014172 326 KI-----------------------QSQFTSGASSISQKAGVAALGL-GYAGGEVVSKMVKAFRERRDFLVKSFGELEGV 381 (429)
Q Consensus 326 ~~-----------------------~~~~~~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~ 381 (429)
.. ........+..........+.. .....+.+.+...........+...+...+|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 329 (404)
T d1qz9a_ 250 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 329 (404)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccccccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCE
Confidence 10 0111222333443333333321 00123444444444444444455555556688
Q ss_pred eeecCC-----ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 382 KMSEPQ-----GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 382 ~~~~p~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
++..|. +++ +.+.++ ++.++.+.|.+ .||.+
T Consensus 330 ~i~~p~~~~~r~~~-vsf~~~--------------~~~~v~~~L~~-~gi~~ 365 (404)
T d1qz9a_ 330 TLVTPREHAKRGSH-VSFEHP--------------EGYAVIQALID-RGVIG 365 (404)
T ss_dssp EECSCSSGGGBCSE-EEEECT--------------THHHHHHHHHT-TTEEC
T ss_pred EEECCCCccceeeE-EEEecC--------------CHHHHHHHHHH-CCCEE
Confidence 887543 344 555554 57788888765 48865
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=1.7e-15 Score=149.56 Aligned_cols=323 Identities=11% Similarity=0.001 Sum_probs=214.9
Q ss_pred HHHhcCCCeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCC---cEEEecChH
Q 014172 89 ALAQAGVSVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPD---QILVSNGAK 165 (429)
Q Consensus 89 ~~~~~g~~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~---~i~~t~G~~ 165 (429)
++-..|.+..+|......+. ++++.+.+.+.+.++...+...+...++.+.+.+++.+.+|.+-... .=++|+|++
T Consensus 47 ~l~~dg~~~~n~asf~~t~~-~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgS 125 (450)
T d1pmma_ 47 ELYLDGNARQNLATFCQTWD-DENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS 125 (450)
T ss_dssp HGGGSCCGGGBCSCCSCCCC-CHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHH
T ss_pred HhccCCCccccccccccCCC-CHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchH
Confidence 34446766778887765543 56777888887766555554445567999999999999999653221 248999999
Q ss_pred HHHHHHHHHhcC-----------C-CCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEE
Q 014172 166 QSILQAVLAVCS-----------P-GDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLI 233 (429)
Q Consensus 166 ~al~~~l~~l~~-----------~-gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~ 233 (429)
+++.+++.+... . ...++++...|.++..+++..|++++.|+.++ +++.+|++.|++++++++.+|+
T Consensus 126 eA~~~a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~-~~~~~d~~~L~~~i~~~t~~Vv 204 (450)
T d1pmma_ 126 EACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENTIGVV 204 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecC-CCCcCcHHHHHHHhhhCceEEE
Confidence 999988776421 1 23577888889999999999999999999875 3578999999999999999999
Q ss_pred EcCCCCCccCCCCHHHHHHHHH---HHHhCCCeEEEEccCCcccc--cCCCCCCccccCCCCCCceEEEeccChhccccc
Q 014172 234 LCSPSNPTGSVYPKNLLDEIAR---IVAKHPRLLVLSDEIYEHII--YAPATHTSFASLPGMWERTLTVNGFSKAFAMTG 308 (429)
Q Consensus 234 l~~p~NPtG~~~~~~~l~~I~~---~a~~~~~i~vi~Deay~~~~--~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G 308 (429)
.+.+++.||.+-+.+++.+|++ .|+++ |+|+++|.+|+++. |......... +......+..|.+|.++ ..
T Consensus 205 ~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~-~i~lHVDAA~gG~~~p~~~~~~~~~~---~~~~aDSi~~s~HK~~~-~p 279 (450)
T d1pmma_ 205 PTFGVTYTGNYEFPQPLHDALDKFQADTGI-DIDMHIDAASGGFLAPFVAPDIVWDF---RLPRVKSISASGHKFGL-AP 279 (450)
T ss_dssp CBBSCTTTCBBCCHHHHHHHHHHHHHHHCC-CCCEEEECTTGGGTHHHHCTTCCCST---TSTTEEEEEEETTTTTC-CC
T ss_pred eeeeeccCCCccccchhhHHHHHHHHHhcc-CcEEEeehhhccceeeeechhhhhhh---cccceeEeecChhhccC-CC
Confidence 9999999999999665554443 46778 99999999998753 2221111111 12345578889999875 44
Q ss_pred ceeeEEEcCHH-HHHHHHHHh--------hcccCCC--chHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhcc
Q 014172 309 WRLGYIAGPKH-FVAACNKIQ--------SQFTSGA--SSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGE 377 (429)
Q Consensus 309 ~R~G~v~~~~~-~~~~l~~~~--------~~~~~~~--~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~ 377 (429)
..+||++..+. ......... ...+... +.....+....+.. .+.+.+++..++..+..+++.+.|++
T Consensus 280 ~g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~--~G~~G~~~~~~~~~~la~~l~~~L~~ 357 (450)
T d1pmma_ 280 LGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLR--LGREGYTKVQNASYQVAAYLADEIAK 357 (450)
T ss_dssp SSCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeeEEEecChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56899987543 221110000 0111111 11222222222221 13567888888999999999999999
Q ss_pred CCCceeecC---Cce-EEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 378 LEGVKMSEP---QGA-FYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 378 l~g~~~~~p---~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+++++..+ ..+ ..+.+++.+.. . ...+..++..+|.++ |..|
T Consensus 358 ~~~~el~~~~~p~~~l~~V~Fr~~~~~---~----~~~~~~~l~~~L~~~-Gw~v 404 (450)
T d1pmma_ 358 LGPYEFICTGRPDEGIPAVCFKLKDGE---D----PGYTLYDLSERLRLR-GWQV 404 (450)
T ss_dssp TSCEEEEEECCTTTBSSEEEEEECTTC---C----CSSCHHHHHHHHHTT-TCBC
T ss_pred CCCeEEEeCCCCCCceEEEEEecCCcc---c----CCCCHHHHHHHHHHc-CCee
Confidence 988887632 222 22445553210 0 112677888888765 6544
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=1.4e-15 Score=150.30 Aligned_cols=271 Identities=18% Similarity=0.170 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCcEEEecChHH-HHHHHHHHh---cCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCC
Q 014172 135 LELRSAICHKLKEENGLSYTPDQILVSNGAKQ-SILQAVLAV---CSPGDEVIIPAPFWVSYPEMARIADATPVILPTRI 210 (429)
Q Consensus 135 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~-al~~~l~~l---~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~ 210 (429)
..+...+.+++.+.+|.+-. ...++|+|+++ ++.+++.++ ..+++.|+++...|.++...+..+|++++.|+..+
T Consensus 93 ~~le~~~~~~~~~l~g~~~~-~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~ 171 (445)
T d3bc8a1 93 NKITNSLVLNVIKLAGVHSV-ASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL 171 (445)
T ss_dssp HHHHHHHHHHHHHHHTCTTC-CEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHHhCCCcc-cCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec
Confidence 46777888888888886432 45566666654 444444444 45679999999999999999999999999997543
Q ss_pred -CCCCCCCHHHHHhhccc----CCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc-cCCCCCCcc
Q 014172 211 -SENFLLDPKVLESKLTE----KSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII-YAPATHTSF 284 (429)
Q Consensus 211 -~~~~~~d~e~l~~~l~~----~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~-~~~~~~~~~ 284 (429)
++++.+|+++|++++.+ ++.+|++++|+|++|.+.+ +++|+++|++| |+++++|++|+... +........
T Consensus 172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~---~~~i~~~~~~~-~~~l~vD~a~~~~~~~~~~~~~~~ 247 (445)
T d3bc8a1 172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANY-DIPHVVNNAYGLQSSKCMHLIQQG 247 (445)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHH-TCCEEEECTTTTTCHHHHHHHHHH
T ss_pred cCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh---HHHHHHHHHHh-CCcEEEEccchhhhhhccccchhc
Confidence 34578999999998853 5778889999999999999 99999999999 99999999998532 111110011
Q ss_pred ccCCCCCCceEEEeccChhcccccceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHH
Q 014172 285 ASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKA 363 (429)
Q Consensus 285 ~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~ 363 (429)
..+ .+..++..|.+|.++.+ ...|+++. +..+++.+.........+.+...+.+....+. .+......+.
T Consensus 248 ~~~---~~vd~~~~s~hK~~~~p-~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~ 318 (445)
T d3bc8a1 248 ARV---GRIDAFVQSLDKNFMVP-VGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLG-----CSGYRKLLKE 318 (445)
T ss_dssp HHH---SCCCEEEEEHHHHHSCC-SSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred cCc---CCcceEEecCccccccC-CCCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHHh-----hhcchhhHHH
Confidence 111 12347788999988734 34566655 56666666554433333333344443333332 3334455555
Q ss_pred HHHHHHHHHHHhccCC---Cceee-cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 364 FRERRDFLVKSFGELE---GVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 364 ~~~~r~~l~~~L~~l~---g~~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
..++.+++.+.|.++. |..+. .+...+..++.+..... ....+..++...|.+. ||
T Consensus 319 ~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~------~~~~~~~~l~~~L~~~-gI 378 (445)
T d3bc8a1 319 RKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDG------HHDKAVTQLGSMLFTR-QV 378 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSS------SSSCHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccc------cCCCCHHHHHHHHHHc-CC
Confidence 5556666666665431 43332 34444445555533211 0112455677776655 65
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.66 E-value=1.1e-14 Score=140.63 Aligned_cols=230 Identities=16% Similarity=0.187 Sum_probs=159.8
Q ss_pred HHHHHHHHHcCCCC-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHh-cCCCCEEEEcCCCCCC
Q 014172 114 AEAGINAIREGFTR-YTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAV-CSPGDEVIIPAPFWVS 191 (429)
Q Consensus 114 ~~a~~~~~~~~~~~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l-~~~gd~Vlv~~p~y~~ 191 (429)
++++.+.+++++.. .+| -..+|++.++++++ ...++.++++|.|+.++++++ +++||+|++|..+|..
T Consensus 4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~~--------~~~~~~~~SgT~Al~lal~~l~~~~gdeVi~p~~t~~a 73 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYSK--------SENALALNSATAALHLALRVAGVKQDDIVLASSFTFIA 73 (374)
T ss_dssp HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHHC--------CSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGG
T ss_pred HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHHC--------cCeEEEeCCHHHHHHHHHHHcCCCCcCEEEeCCcchHh
Confidence 46677777776532 343 35788888888863 357899999999999999998 7899999999999999
Q ss_pred hHHHHHHcCCEEEEecCCCCCCCCCCHH--HHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEcc
Q 014172 192 YPEMARIADATPVILPTRISENFLLDPK--VLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDE 269 (429)
Q Consensus 192 ~~~~~~~~g~~~~~v~~~~~~~~~~d~e--~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~De 269 (429)
....+..+|++++.+++++. .+..+.+ .+.....+++++|++. +..|...+ +++|.++|+++ ++.||+|.
T Consensus 74 ~~~~~~~~g~~pv~~Di~~~-~~~~~~~~~~~~~~~~~~~~aii~~---~~~G~~~d---~~~i~~~~~~~-~i~vIED~ 145 (374)
T d1o69a_ 74 SVAPICYLKAKPVFIDCDET-YNIDVDLLKLAIKECEKKPKALILT---HLYGNAAK---MDEIVEICKEN-DIVLIEDA 145 (374)
T ss_dssp GTHHHHHTTCEEEEECBCTT-SSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCCC---HHHHHHHHHHT-TCEEEEEC
T ss_pred hHHHHhhccceeEecccccc-cccccccccccchhccccccccccc---ccccchhh---hHHHHHHhhcc-Ccchhhhh
Confidence 99999999999999999743 2333444 3445667789999854 44688888 99999999999 99999999
Q ss_pred CCcccc-cCCCCCCccccCCCCCCceEEEeccC--hhcccccceeeEEEc-CHHHHHHHHHHhhc--------------c
Q 014172 270 IYEHII-YAPATHTSFASLPGMWERTLTVNGFS--KAFAMTGWRLGYIAG-PKHFVAACNKIQSQ--------------F 331 (429)
Q Consensus 270 ay~~~~-~~~~~~~~~~~~~~~~~~~i~~~S~S--K~~~~~G~R~G~v~~-~~~~~~~l~~~~~~--------------~ 331 (429)
+++... |.+.. +..+. .+.+.||. |.++ +|- .|.+++ ++++.+.+..+... +
T Consensus 146 a~a~g~~~~~~~---~G~~g-----d~~~fSf~~~K~l~-tge-GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~ 215 (374)
T d1o69a_ 146 AEALGSFYKNKA---LGTFG-----EFGVYSYNGNKIIT-TSG-GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY 215 (374)
T ss_dssp TTCTTCEETTEE---TTSSS-----SEEEEECCTTSSSC-CSS-CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred hhhhcceECCee---cCCCC-----ceEEEeccCccccc-ccc-ceeehhhhHHHHHhhccccccccccccccccccCCc
Confidence 998743 22221 22221 36777875 8886 443 466655 57777777655322 1
Q ss_pred cCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 014172 332 TSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 332 ~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
.+.++.+..+.+...|+. ++...++.++..+++.+.|.+.
T Consensus 216 N~rm~ei~Aaig~~qL~~-------l~~~i~~r~~i~~~y~~~L~~~ 255 (374)
T d1o69a_ 216 NYRLSNVLGAIGVAQMEV-------LEQRVLKKREIYEWYKEFLGEY 255 (374)
T ss_dssp BCBCCHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccchhhhhhHHHHhh-------hhhhcchhHHHHHHHHhhcccc
Confidence 223455544444444443 3344444455666677777664
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=2.1e-15 Score=144.63 Aligned_cols=288 Identities=12% Similarity=0.091 Sum_probs=182.8
Q ss_pred CCCChHHHHHHHHHHHHcCCCCCCC--CCCCHHHHHHHHHHHHhhcCCCCCCCc--EEEecChHHHHHHHHHHhcCCCCE
Q 014172 106 DFDTPVLIAEAGINAIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPDQ--ILVSNGAKQSILQAVLAVCSPGDE 181 (429)
Q Consensus 106 ~~~~p~~v~~a~~~~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~~--i~~t~G~~~al~~~l~~l~~~gd~ 181 (429)
+.+.|+.|++++.+.. .+++++ ..-..+.|+.+++++ | +++++ +++|+|+|+++++++..+..+++.
T Consensus 8 P~~~~~~V~~A~~~~~---~~~~~~~~~~~~~~~r~~l~~l~----~--~~~~~~~i~~t~s~T~~~~~~~~~l~~~~~~ 78 (361)
T d1m32a_ 8 PLTTSRTVKEAMLFDS---CTWDDDYNIGVVEQIRQQLTALA----T--ASEGYTSVLLQGSGSYAVEAVLGSALGPQDK 78 (361)
T ss_dssp SCCCCHHHHHTTCCCC---CTTSHHHHTTTHHHHHHHHHHHH----C--SSSSEEEEEEESCHHHHHHHHHHHSCCTTCC
T ss_pred CCCCCHHHHHHhhhhc---cCCCcHHHHHHHHHHHHHHHHHh----C--CCCCCEEEEECCCHHHHHHHHHHHhhhhccc
Confidence 4455778877754321 122221 122356677777665 4 34443 778889999999999999988877
Q ss_pred EEEcCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh
Q 014172 182 VIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259 (429)
Q Consensus 182 Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~ 259 (429)
+++....+.. .....+..+.....+..........+.+.......++++++.+++.+|-||..++ +++|.++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~---i~~i~~~~~~ 155 (361)
T d1m32a_ 79 VLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP---IDEVGALAHR 155 (361)
T ss_dssp EEEEESSHHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred cceeeehhhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchh---hhhhhhhhcc
Confidence 7766654433 2344556666666665544333223444445556778999999999999999999 9999999999
Q ss_pred CCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-cccceeeEEEcCHHHHHHH--------------
Q 014172 260 HPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA-MTGWRLGYIAGPKHFVAAC-------------- 324 (429)
Q Consensus 260 ~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~~G~R~G~v~~~~~~~~~l-------------- 324 (429)
| |+++++|.+++.. ..+..+.. .+.++.+.|..|.++ .+| +|+++..++..+.+
T Consensus 156 ~-g~~~~vDa~qs~G----~~~~d~~~----~~~D~~~~s~~K~l~gp~G--~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 224 (361)
T d1m32a_ 156 Y-GKTYIVDAMSSFG----GIPMDIAA----LHIDYLISSANKCIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQ 224 (361)
T ss_dssp H-TCEEEEECTTTTT----TSCCCTTT----TTCSEEEEESSSTTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHH
T ss_pred c-ceeeEeecccccC----cccccccc----cccceEEeeecccccCCCC--ceEEEechhhhhhhccccccccccchhh
Confidence 9 9999999999862 22223322 456699999999985 345 78888877654322
Q ss_pred ----HHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC---CceEEEEEecC
Q 014172 325 ----NKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFS 397 (429)
Q Consensus 325 ----~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p---~~~~~~~~~l~ 397 (429)
.........+++.....+...++.... .+.......++.+...+.+.+.++.. |+....+ .+...+.+.+|
T Consensus 225 ~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~rs~~v~~~~~p 302 (361)
T d1m32a_ 225 WRCMEDNHGKWRFTSPTHTVLAFAQALKELA-KEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDDELHSPIITAFYSP 302 (361)
T ss_dssp HHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECC
T ss_pred hccccccccccCCCCCchhhhHHHHHHHHHH-HhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCChhhcCCcEEEEECC
Confidence 112233344566767666666665310 02224455566677777788888776 5444322 12333456666
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+... .+..++++.|.++ ||.+
T Consensus 303 ~~~~---------~~~~~~~~~l~~~-gi~i 323 (361)
T d1m32a_ 303 EDPQ---------YRFSEFYRRLKEQ-GFVI 323 (361)
T ss_dssp CCTT---------CCHHHHHHHHHHT-TEEC
T ss_pred CCCC---------CCHHHHHHHHHHC-CcEE
Confidence 4311 3678889888766 7764
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.64 E-value=1e-14 Score=140.71 Aligned_cols=304 Identities=14% Similarity=0.061 Sum_probs=190.7
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC-C-----C-CCCCCCCHHHHHHHHHHHHhhcCCCCCCCcE-EEecChHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF-T-----R-YTPNAGTLELRSAICHKLKEENGLSYTPDQI-LVSNGAKQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~-~-----~-Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i-~~t~G~~~a 167 (429)
..|+|-..++. .++.+.+++...+.+.+ . + |+...-..++.....++..+.++.....+.| +-..+++.+
T Consensus 28 ~~l~LiaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~A 105 (463)
T d2a7va1 28 RGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPA 105 (463)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCeeEeccCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHH
Confidence 46999888877 45777777776664321 1 1 2223335677776677777888865544332 333456667
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHHHH--------HHcCC--EEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMA--------RIADA--TPVILPTRISENFLLDPKVLESKLTE-KSRLLILCS 236 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~~~--------~~~g~--~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~ 236 (429)
...++.+|++|||+|+..++...++...- ...|. +.+.+.+++ .++.+|.+++++.... ++|+|++-.
T Consensus 106 n~av~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~-~~~~IDyd~~~~~a~~~kPklIi~G~ 184 (463)
T d2a7va1 106 NLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP-KTGLIDYNQLALTARLFRPRLIIAGT 184 (463)
T ss_dssp HHHHHHHHCCSCEECCC-------------------------------CCBCT-TTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccC-CCCcCcHHHHHHHHhhcCCceEEecc
Confidence 77799999999999998888776665322 12222 344455554 3467999999998764 899988744
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
-.+| ..++ ++++.++|++. |.+++.|-+|......+..+++.... -.|+.+|.+|+| +|.|.|.+++
T Consensus 185 S~y~--r~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sP~~~-----aDvvt~tTHKTl--rGPrgGiIl~ 251 (463)
T d2a7va1 185 SAYA--RLID---YARMREVCDEV-KAHLLADMAHISGLVAAKVIPSPFKH-----ADIVTTTTHKTL--RGARSGLIFY 251 (463)
T ss_dssp SSCC--SCCC---HHHHHHHHHHT-TCEEEEECGGGHHHHHTTSSCCGGGT-----CSEEEEESSGGG--CSCSCEEEEE
T ss_pred cccc--cccC---HHHHHHHhhcc-cceEEechhhhhHHhhhhhhcChhhh-----hhhhhchhhhhh--cCCCceEEEE
Confidence 4443 3456 88999999999 99999999987433323233332222 238899999998 7999999998
Q ss_pred CH---------------HHHHHHHHHhhcccCCCchHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 317 PK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 317 ~~---------------~~~~~l~~~~~~~~~~~~~~~q~aa~~-~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
.+ ++.+.+.+...+...+.+.....|+.+ ++... .....+...+...++.+.|.+.|.+. |
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea--~~~~fk~Ya~qVv~NAk~La~~L~~~-G 328 (463)
T d2a7va1 252 RKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQA--CTPMFREYSLQVLKNARAMADALLER-G 328 (463)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred cccccccccccCccchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHhC-C
Confidence 65 567777776666555555555544433 33320 12346778888888999999999988 8
Q ss_pred ceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 381 VKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 381 ~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
+.++. ...+..+++++... .-....+++.|++.||.++
T Consensus 329 ~~vv~ggTdnHlvlvdl~~~-----------~~~G~~ae~~Le~~gI~~N 367 (463)
T d2a7va1 329 YSLVSGGTDNHLVLVDLRPK-----------GLDGARAERVLELVSITAN 367 (463)
T ss_dssp CEEGGGSCSSSEEEEECTTT-----------TCCHHHHHHHHHHTTEECE
T ss_pred CeeecCCCCCceeeeecccc-----------CCCHHHHHHHHHhccCccC
Confidence 88863 34456688998543 1244666677788899874
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.62 E-value=3.3e-14 Score=137.58 Aligned_cols=298 Identities=14% Similarity=0.132 Sum_probs=196.7
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++- +|++.+++.+++++.. +.+..-..+.+..+++.+..... ...+.+.+++++++++.
T Consensus 35 dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~f~~sGseA~e 110 (387)
T d1vefa1 35 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLM--AMPQTLPTPMRGEFYRTLTAILP--PELNRVFPVNSGTEANE 110 (387)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCC--CCCTTSCCHHHHHHHHHHHHTSC--TTEEEEEEESSHHHHHH
T ss_pred CCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhc--ccccccCCchHHHHHHHhhhhcc--ccceeeccccCchHHHH
Confidence 578899987754 44554 7899999999987632 22222234566677776665433 22357999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChHHHHHH-cC------------CEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEE
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARI-AD------------ATPVILPTRISENFLLDPKVLESKLTEKSRLLIL 234 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~-~g------------~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l 234 (429)
.+++... .....|+....+|.+....+.. .| ..+..+|. .|.+.|++.+.++..+|++
T Consensus 111 ~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~~iAavi~ 183 (387)
T d1vefa1 111 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEETAAVIL 183 (387)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCCCeEEEEE
Confidence 9988753 2236788888888765433332 22 12344443 2789999999888777766
Q ss_pred cCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeE
Q 014172 235 CSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGY 313 (429)
Q Consensus 235 ~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~ 313 (429)
...+...|. ..+++.+++|.++|++| |+++|.||++.+|...|... ....+.-.+| +.+++|.++ .|..++.
T Consensus 184 EPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~~-~~~~~~v~PD----i~~~gK~l~-gG~~~~~ 256 (387)
T d1vefa1 184 EPVQGEGGVRPATPEFLRAAREITQEK-GALLILDEIQTGMGRTGKRF-AFEHFGIVPD----ILTLAKALG-GGVPLGV 256 (387)
T ss_dssp CSEETTTTSEECCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSS-THHHHTCCCS----EEEECGGGG-TTSSCEE
T ss_pred ECCCCCCCCccCCHHHHHHHHHHHHHc-CceEEecccccccCccCCCc-ccccCCcCCc----eeeecccCC-CCccccc
Confidence 443444565 46788899999999999 99999999999874333211 1111111112 555899998 8899999
Q ss_pred EEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC--CCceeecCCceEE
Q 014172 314 IAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL--EGVKMSEPQGAFY 391 (429)
Q Consensus 314 v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l--~g~~~~~p~~~~~ 391 (429)
+++.+++++.+.......+++.++++..++.+.|+. .++ .+..+..++.-+++.+.|+++ +.+.-++..|. +
T Consensus 257 ~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~a~L~~---l~~--~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg~Gl-~ 330 (387)
T d1vefa1 257 AVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRY---LER--TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGL-M 330 (387)
T ss_dssp EEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETT-E
T ss_pred cccceeeeeccccCCccccCCCCcchhhhcccchhh---ccc--ccccchHhhhhHHHHHHHHhcCCCceEEEeecce-E
Confidence 999998887776555556677889999999888875 221 234555666667777777775 23332333443 3
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
.-+++... ....+.+.++++ |+.
T Consensus 331 ~~ie~~~~------------~~~~~~~~~~~~-g~l 353 (387)
T d1vefa1 331 VGLELKEK------------AAPYIARLEKEH-RVL 353 (387)
T ss_dssp EEEEESSC------------SHHHHHHHHHHH-CEE
T ss_pred EEEEEeCC------------chHHHHHHHHHC-CCe
Confidence 55666542 345555555555 654
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.61 E-value=5.9e-14 Score=135.49 Aligned_cols=285 Identities=12% Similarity=0.086 Sum_probs=187.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCC--CCCCcEEEecChHHHHHHHHHHhc---CCCCEE
Q 014172 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLS--YTPDQILVSNGAKQSILQAVLAVC---SPGDEV 182 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~--~~~~~i~~t~G~~~al~~~l~~l~---~~gd~V 182 (429)
+.|+.|++++... ...++++ ...++.+.+.+.+.+.++.. .+++.|++|+|+|++++.++..++ ++||+|
T Consensus 13 ~v~~~V~~Am~~~---~~~hr~~--~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~~~~gd~v 87 (382)
T d2bkwa1 13 ILSGAVQKALDVP---SLGHTSP--EFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNV 87 (382)
T ss_dssp CCCHHHHHTTSCC---CCCTTSH--HHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEE
T ss_pred CCCHHHHHHhCcc---cCCCCcH--HHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHhcCCCCce
Confidence 4478888776321 1122322 12334444555555555532 345679999999999999999986 579999
Q ss_pred EEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc-cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHh
Q 014172 183 IIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLT-EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAK 259 (429)
Q Consensus 183 lv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~-~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~ 259 (429)
++..-.+.+. ...++..|..+..+...+ .+...+.+.+++.+. .+++++++++.+|.||...+ ++++.+.|++
T Consensus 88 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---~~~~~~~~~~ 163 (382)
T d2bkwa1 88 LVVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSD---LKAISQAIKQ 163 (382)
T ss_dssp EEECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECC---HHHHHHHHHH
T ss_pred EEEEechhhhhhhhhccccccccccccccC-CCCccchhHHHHHhhhccchheeeeecccccccccc---chhhhhhccc
Confidence 9988766553 355677888887776433 344578888887764 57899999999999999999 7777777766
Q ss_pred C-CCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHHHHh---------
Q 014172 260 H-PRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACNKIQ--------- 328 (429)
Q Consensus 260 ~-~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~~~~--------- 328 (429)
| .++++++|.+++. |..+..+.. ++..+++.|-.|.+ |.+| +|+++.++++++.+....
T Consensus 164 ~~~~~~~~vDa~qs~----g~~pid~~~----~giD~~~~s~~K~l~gP~G--~g~l~vs~~~~~~~~~~~~~~~~~~~~ 233 (382)
T d2bkwa1 164 TSPETFFVVDAVCSI----GCEEFEFDE----WGVDFALTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYF 233 (382)
T ss_dssp HCTTSEEEEECTTTT----TTSCCCTTT----TTCSEEEEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCST
T ss_pred cccceeeeeeccccc----ccccccccc----cCeeEEeecccccCcCCCc--hhhhhccHHHHhhhhhcccCCCcccch
Confidence 5 1599999999886 333333322 35569999999998 5556 899999988776543211
Q ss_pred -----------------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeec--CC--
Q 014172 329 -----------------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSE--PQ-- 387 (429)
Q Consensus 329 -----------------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~--p~-- 387 (429)
..+...++.....++..+|+.- .++.++...+++++.++++++.+.+..++.... ++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 311 (382)
T d2bkwa1 234 SSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNM 311 (382)
T ss_dssp TCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTT
T ss_pred hhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhc
Confidence 1223346666667777777641 133466677777888888888887644443321 11
Q ss_pred -ceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 388 -GAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 388 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
....+.+.++ +..++.+.| +++||.+
T Consensus 312 ~s~~v~~~~~~--------------~~~~~~~~L-~~~gi~i 338 (382)
T d2bkwa1 312 SAHGLTAVYVA--------------DPPDVIAFL-KSHGVVI 338 (382)
T ss_dssp BCSSCEEEECS--------------CHHHHHHHH-HHTTEEC
T ss_pred cCCcEEEEcCC--------------CHHHHHHHH-HHCCeEE
Confidence 1122345554 466777665 5669875
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.61 E-value=4.9e-14 Score=136.28 Aligned_cols=303 Identities=14% Similarity=0.113 Sum_probs=204.5
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCC------CCC-CCCCCCHHHHHHHHHHHHhhcCCCCCCCcE-EEecChHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGF------TRY-TPNAGTLELRSAICHKLKEENGLSYTPDQI-LVSNGAKQS 167 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~------~~Y-~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i-~~t~G~~~a 167 (429)
..|+|-..++. .++.+.+++...+.+.+ .+| +...-..++.....++..+.+|.....+.+ +-..+++.+
T Consensus 32 ~~l~LIaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~A 109 (470)
T d1rv3a_ 32 VGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPA 109 (470)
T ss_dssp SSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHH
T ss_pred cCceEecCCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccH
Confidence 46999888877 45677777776665422 122 222223456666667777788853233333 333467777
Q ss_pred HHHHHHHhcCCCCEEEEcCCCCCChHHHH----------HHcCCEEEEecCCCCCCCCCCHHHHHhhccc-CCcEEEEcC
Q 014172 168 ILQAVLAVCSPGDEVIIPAPFWVSYPEMA----------RIADATPVILPTRISENFLLDPKVLESKLTE-KSRLLILCS 236 (429)
Q Consensus 168 l~~~l~~l~~~gd~Vlv~~p~y~~~~~~~----------~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~-~~~~i~l~~ 236 (429)
...++.++++|||+|+..+....++...- .....+.+.++++++ ++.+|.+++++.... ++|+|++-.
T Consensus 110 n~av~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~kPklIi~G~ 188 (470)
T d1rv3a_ 110 NFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLFHPKLIIAGT 188 (470)
T ss_dssp HHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred HHHHHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-cCcccHHHHHHHHHhhCcceEeech
Confidence 88899999999999999887655543321 112357888888765 356999999998764 899988744
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcc-cccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEE
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEH-IIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIA 315 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~ 315 (429)
-.+| ..++ ++++.++|++. +.+++.|-+|.. ++-+|.-+.++ .. -.|+.+|.+|+| +|.|.|.++
T Consensus 189 S~y~--r~~d---~~~~reIad~v-ga~l~~D~aH~aGLIA~g~~~sPl-~~-----aDvvt~tTHKtl--rGPrgGiI~ 254 (470)
T d1rv3a_ 189 SCYS--RNLD---YGRLRKIADEN-GAYLMADMAHISGLVVAGVVPSPF-EH-----CHVVTTTTHKTL--RGCRAGMIF 254 (470)
T ss_dssp SSCC--SCCC---HHHHHHHHHHT-TCEEEEECTTTHHHHHHTSSCCGG-GT-----CSEEEEESSGGG--CCCSCEEEE
T ss_pred hhcc--ccCC---HHHHHHHHhcc-CCeEEecchhhhhhccccccCChh-he-----eeeeeeehhhhc--cCCcceEEE
Confidence 4443 3456 88999999999 999999999874 33334333333 22 139999999998 799999998
Q ss_pred cCH---------------HHHHHHHHHhhcccCCCchHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC
Q 014172 316 GPK---------------HFVAACNKIQSQFTSGASSISQKAGVA-ALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE 379 (429)
Q Consensus 316 ~~~---------------~~~~~l~~~~~~~~~~~~~~~q~aa~~-~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~ 379 (429)
+.+ ++.+.+.+...+...+.+...+.|+.+ ++... .........+...++.+.|.+.|.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea--~~~~fk~Ya~qvv~NAk~La~~L~~~- 331 (470)
T d1rv3a_ 255 YRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQA--MTPEFKEYQRQVVANCRALSAALVEL- 331 (470)
T ss_dssp EECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 754 367777776666555555555544443 33321 13346778888889999999999997
Q ss_pred Cceeec-CCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeecC
Q 014172 380 GVKMSE-PQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLLH 429 (429)
Q Consensus 380 g~~~~~-p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~ 429 (429)
|+.+.. ...+..+++++... + .+. ..++++|++.||.++
T Consensus 332 G~~v~~ggTdnHlvlvdl~~~-g---------~~g-~~ae~~Le~~gI~~N 371 (470)
T d1rv3a_ 332 GYKIVTGGSDNHLILVDLRSK-G---------TDG-GRAEKVLEACSIACN 371 (470)
T ss_dssp TCEEGGGSCSSSEEEEEGGGG-T---------CCH-HHHHHHHHHTTEECE
T ss_pred CceeccCCCCCceEEEeeccc-C---------CcH-HHHHHHHHHcCcEEC
Confidence 888763 34456688888643 1 234 456777888899864
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.60 E-value=4.9e-14 Score=135.56 Aligned_cols=286 Identities=15% Similarity=0.164 Sum_probs=186.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCC
Q 014172 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p 187 (429)
+.|+.|++++... ..++++. ...++.+.+.+.+++.+|.+ +...|+++.|+|+++++++..++.+|+.+++..-
T Consensus 28 ~v~~~Vl~am~~~---~~~hr~~--ef~~i~~~~r~~l~~ll~~~-~~~~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~ 101 (377)
T d1vjoa_ 28 NAHPSVLQAMNVS---PVGHLDP--AFLALMDEIQSLLRYVWQTE-NPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVA 101 (377)
T ss_dssp CCCHHHHHHHSSC---CCCTTSH--HHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHhCcC---CCCCCCH--HHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHhccccccccceeee
Confidence 3578888776432 2233322 23455666666666666743 3457888888999999999999999999988876
Q ss_pred CCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhh-cccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeE
Q 014172 188 FWVSY--PEMARIADATPVILPTRISENFLLDPKVLESK-LTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264 (429)
Q Consensus 188 ~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~-l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~ 264 (429)
.+... .......+.....+...... ..+.+..+.. .+++++++.+++.+|.||...+ +++|.++|+++ +.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~---i~~i~~~~~~~-g~~ 175 (377)
T d1vjoa_ 102 GYFGNRLVDMAGRYGADVRTISKPWGE--VFSLEELRTALETHRPAILALVHAETSTGARQP---LEGVGELCREF-GTL 175 (377)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTC--CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHH-TCE
T ss_pred chhhhhhhhhhhhhcccccccccCCCC--cccchhhhhhhhcCcceeeeeeeeeccceeeec---hhhhhhhhhhc-cce
Confidence 66543 34555667777666654322 2455555444 4568899999999999999999 99999999999 899
Q ss_pred EEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhh---------------
Q 014172 265 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQS--------------- 329 (429)
Q Consensus 265 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~--------------- 329 (429)
+++|.+++.. ..+..+.. .+.++.+.|..|.++ .+..+|+++..+..++.......
T Consensus 176 ~~vDa~~~~g----~~~~~~~~----~~~d~~~~s~~K~~~-gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (377)
T d1vjoa_ 176 LLVDTVTSLG----GVPIFLDA----WGVDLAYSCSQKGLG-CSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKY 246 (377)
T ss_dssp EEEECTTTTT----TSCCCTTT----TTCSEEECCSSSTTC-SCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHH
T ss_pred EEEecchhhh----hhhhcccc----cccceeeeccccccc-CCCEEEEecchhhHHhhhhccCCCCcceeeccchhhhc
Confidence 9999999752 22222222 355688899999885 33457888888877765432211
Q ss_pred ----cccC-CCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC---CceEEEEEecCCccC
Q 014172 330 ----QFTS-GASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFYLFIDFSTYYG 401 (429)
Q Consensus 330 ----~~~~-~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p---~~~~~~~~~l~~~~~ 401 (429)
.... .+......++..++... .....+...++.+++.+++.+.+... ++....+ .....+.+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~g~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~rs~~v~~~~~p~~-- 321 (377)
T d1vjoa_ 247 WGSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQKNVEYLWERLEDI-GLSLHVEKEYRLPTLTTVCIPDG-- 321 (377)
T ss_dssp HSTTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCGGGBCSSEEEEECCTT--
T ss_pred cCcccccccccceechhhhHHHHhhh--hhcCchHHHHHHHHHhhhhhhhhhcc-CceeecChHhcCCeEEEEECCCC--
Confidence 1111 22333333333333210 12335677778888888899998876 5444322 1233356667643
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..+++.+|++++||.+
T Consensus 322 ---------~~~~~l~~~L~~~~gI~v 339 (377)
T d1vjoa_ 322 ---------VDGKAVARRLLNEHNIEV 339 (377)
T ss_dssp ---------CCHHHHHHHHHHHHCEEC
T ss_pred ---------CCHHHHHHHHHhcCCEEE
Confidence 378999999999999976
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=7.7e-14 Score=135.70 Aligned_cols=301 Identities=14% Similarity=0.075 Sum_probs=188.9
Q ss_pred hcCCCeEEcCCCCC--CCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 92 QAGVSVIRLAAGEP--DFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 92 ~~g~~~i~L~~g~~--~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
..|+..||+..|.. .++- +|++.+++.+.+.+.. +............+++.+.+.. ..+.++++++++++.
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~sGseA~ 111 (404)
T d2byla1 38 VEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLT--LTSRAFYNNVLGEYEEYITKLF----NYHKVLPMNTGVEAG 111 (404)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCC--CCCTTEEESSHHHHHHHHHHHH----TCSEEEEESSHHHHH
T ss_pred CCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCC--CcccccccchHHHHHHhhhhcc----cccccccccCccccc
Confidence 36788999988763 3444 7889999999886532 1111111122233333443332 347899999999999
Q ss_pred HHHHHHhc---------C-CCCEEEEcCCCCCChHHHHHHcC-------------CEEEEecCCCCCCCCCCHHHHHhhc
Q 014172 169 LQAVLAVC---------S-PGDEVIIPAPFWVSYPEMARIAD-------------ATPVILPTRISENFLLDPKVLESKL 225 (429)
Q Consensus 169 ~~~l~~l~---------~-~gd~Vlv~~p~y~~~~~~~~~~g-------------~~~~~v~~~~~~~~~~d~e~l~~~l 225 (429)
..+++... . ....++...-+|........... ..+..+|. .|++.+++.+
T Consensus 112 e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~l 184 (404)
T d2byla1 112 ETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERAL 184 (404)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHHHHH
T ss_pred hhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHHHhc
Confidence 99988752 1 12467666666664332222111 12333442 2789999998
Q ss_pred ccC-CcEEEEcCCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 226 TEK-SRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 226 ~~~-~~~i~l~~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
.++ ..+|++.......| ...+++.+++|.++|++| |+++|.||++.+|...|.. ..+..+.-..| +.+|+|.
T Consensus 185 ~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~-g~llI~DEV~tGfgR~G~~-~a~~~~gv~PD----i~~~gK~ 258 (404)
T d2byla1 185 QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH-QVLFIADEIQTGLARTGRW-LAVDYENVRPD----IVLLGKA 258 (404)
T ss_dssp TSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTCCCS----EEEECGG
T ss_pred CCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc-CeEEEeecccccccccccc-chhhhcCCCCC----EEEECch
Confidence 754 44555533355456 566788899999999999 9999999999886433322 12222221122 4479999
Q ss_pred ccccc-ceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCC--C
Q 014172 304 FAMTG-WRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELE--G 380 (429)
Q Consensus 304 ~~~~G-~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~--g 380 (429)
++ .| +.+|.+++++++.+.+.......+++.++++.+++.+.|+. .++ +++.+..++.-+++.+.|.++. .
T Consensus 259 l~-gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~---i~~--~~l~~~~~~~g~~l~~~l~~l~~~~ 332 (404)
T d2byla1 259 LS-GGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAALEV---LEE--ENLAENADKLGIILRNELMKLPSDV 332 (404)
T ss_dssp GG-TTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHH---HHH--TTHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred hh-CCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHHHHH---HHh--cCchhhhhHhhHHHHHHHHhhcccc
Confidence 98 66 89999999999988776655556677789999999888875 221 2344555666667777777652 2
Q ss_pred ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 381 VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 381 ~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.-++..|-| .-+.+.... .....+++++|+++ ||.+
T Consensus 333 i~~vRg~Gl~-~~i~~~~~~---------~~~~~~~~~~l~~~-Gvl~ 369 (404)
T d2byla1 333 VTAVRGKGLL-NAIVIKETK---------DWDAWKVCLRLRDN-GLLA 369 (404)
T ss_dssp EEEEEEETTE-EEEEECCCS---------SCCHHHHHHHHHHT-TEEC
T ss_pred ceeeeecccE-EEEEEecCC---------chhHHHHHHHHHhC-CeEE
Confidence 3323344434 334543320 12577899999877 8865
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=7.3e-14 Score=133.25 Aligned_cols=281 Identities=15% Similarity=0.083 Sum_probs=184.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcC
Q 014172 107 FDTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPA 186 (429)
Q Consensus 107 ~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~ 186 (429)
.+.|++|++++.+.. ..+++ ....++.+.+.+.+++.++. +.+.++++.|+|.++++++..++.+||+|++..
T Consensus 9 ~~v~~~V~~am~~~~---~~hr~--~~f~~i~~~~~~~l~~ll~~--~~~~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~ 81 (348)
T d1iuga_ 9 VRLHPKALEALARPQ---LHHRT--EAAREVFLKARGLLREAFRT--EGEVLILTGSGTLAMEALVKNLFAPGERVLVPV 81 (348)
T ss_dssp CCCCHHHHHHHHSCC---CCTTS--HHHHHHHHHHHHHHHHHHTC--SSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCHHHHHHhcCCC---CCCCC--HHHHHHHHHHHHHHHHHhCC--CCCEEEEeCchHHHHHHHHHhcccccccceeec
Confidence 455788888875421 22222 12345555566666666663 456788999999999999999999999998887
Q ss_pred CCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhC-CCe
Q 014172 187 PFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKH-PRL 263 (429)
Q Consensus 187 p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~-~~i 263 (429)
-.+.+ +...++.+|.++..+...... .++++. ....+++.+++++..+.||...+ +++|.++|++| ++.
T Consensus 82 ~G~f~~~~~~~a~~~~~~~~~~~~~~g~--~~~~~~---~~~~~~~~v~~~h~eTstG~~~~---i~~i~~~~~~~~~~~ 153 (348)
T d1iuga_ 82 YGKFSERFYEIALEAGLVVERLDYPYGD--TPRPED---VAKEGYAGLLLVHSETSTGALAD---LPALARAFKEKNPEG 153 (348)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTC--CCCTTT---SCCSSCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHhcCcccccccccCCC--cccccc---ccccCCCeeEEEecchhhhhhcc---HHHHHHHHHhhhccc
Confidence 76443 346778889988888864322 244433 33568899999999999999999 88889999876 257
Q ss_pred EEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc-ccccceeeEEEcCHHHHHHHH-------------HH-h
Q 014172 264 LVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF-AMTGWRLGYIAGPKHFVAACN-------------KI-Q 328 (429)
Q Consensus 264 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~v~~~~~~~~~l~-------------~~-~ 328 (429)
++++|.+.+.. ..+..+.. ++-.+++.|-.|.+ |.+| +|+++.+++.++.+. .. .
T Consensus 154 l~~vDavss~g----~~~i~~d~----~~iD~~~~~sqK~l~gppG--~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~ 223 (348)
T d1iuga_ 154 LVGADMVTSLL----VGEVALEA----MGVDAAASGSQKGLMCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKE 223 (348)
T ss_dssp EEEEECTTTBT----TBCCCSGG----GTCSEEEEESSSTTCCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTT
T ss_pred eeechhhhccc----cccccccc----ccCCEEEeccccceecCCc--eeeeeechHHHhhhcccccccchhhhhhhhcc
Confidence 88889988752 22222221 34568999999999 7677 799999888766431 11 1
Q ss_pred hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCC-ceEEEEEecCCccCCcccCC
Q 014172 329 SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQ-GAFYLFIDFSTYYGSEAEGF 407 (429)
Q Consensus 329 ~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~-~~~~~~~~l~~~~~~~~~~~ 407 (429)
..+..+++....+++..+|+. ..+...+..+..+..+..+.+.++.. |+...+.. +.-.+.+.+|+.
T Consensus 224 ~~~~~Tp~v~~i~~l~~aL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~v~~~~~P~g-------- 291 (348)
T d1iuga_ 224 GESAWTPAINLVLAVAAVLEE---VLPRLEEHLALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEG-------- 291 (348)
T ss_dssp TCCSSCCCHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTT--------
T ss_pred CcccccccchHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHhhhhhhh-hhccChhhcCCeEEEEECCCC--------
Confidence 223345666677777778864 22223444444454555555555555 77665322 111256777753
Q ss_pred CCCCChHHHHHHHHHhCCeec
Q 014172 408 GKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 408 ~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.+..++.+.|. ++|+.+
T Consensus 292 ---~~~~~~~~~l~-~~gi~i 308 (348)
T d1iuga_ 292 ---VPYARVKEAFA-QRGAVI 308 (348)
T ss_dssp ---CCHHHHHHHHH-TTTEEC
T ss_pred ---CCHHHHHHHHH-HCCeEE
Confidence 37788888775 558875
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1.4e-13 Score=132.25 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=154.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHH----HcCCEEEEecCCCCC
Q 014172 137 LRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMAR----IADATPVILPTRISE 212 (429)
Q Consensus 137 lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~~~~~ 212 (429)
-++.+++.+....| .+..+++++|..++.. +..++.+||.|++....|.+....+. ..|.++..++
T Consensus 56 T~~~lE~~la~LE~----~~~a~~~sSGmaAi~~-~l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~~~~----- 125 (393)
T d1n8pa_ 56 NRENLERAVAALEN----AQYGLAFSSGSATTAT-ILQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTN----- 125 (393)
T ss_dssp HHHHHHHHHHHHTT----CSEEEEESCHHHHHHH-HHHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEES-----
T ss_pred HHHHHHHHHHHHhC----CceEEEecCchhHHHh-hhhcccCCCeeeeeeeecccchhhhhhhhhcccceeEEee-----
Confidence 34444444444333 3567778888888875 45778899999999999988766554 4577766664
Q ss_pred CCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHH----hCCCeEEEEccCCcccccCCCCCCccccCC
Q 014172 213 NFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVA----KHPRLLVLSDEIYEHIIYAPATHTSFASLP 288 (429)
Q Consensus 213 ~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~----~~~~i~vi~Deay~~~~~~~~~~~~~~~~~ 288 (429)
.+.+++++++++++++|++.+|.||+..+.+ +++|+++|+ ++ |+++|+|..|.--.+ ...+
T Consensus 126 ---~~~~~~~~~i~~~t~lv~~EspsNP~l~v~D---i~~ia~~a~~~~~~~-g~~lvVDnT~atP~~-------~~Pl- 190 (393)
T d1n8pa_ 126 ---DLLNDLPQLIKENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQ-DVILVVDNTFLSPYI-------SNPL- 190 (393)
T ss_dssp ---SHHHHHHHHSCSSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTT-TCEEEEECTTTHHHH-------CCGG-
T ss_pred ---cchHHHHHHhhhhcceeEecCcchhhhhccc---hhhhhhhhhhhcccC-CceEEEecCccCccc-------CCch-
Confidence 2567899999999999999999999999999 888888888 77 899999999974211 1111
Q ss_pred CCCCceEEEeccChhccccc-ceeeEEEc-CHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 014172 289 GMWERTLTVNGFSKAFAMTG-WRLGYIAG-PKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRE 366 (429)
Q Consensus 289 ~~~~~~i~~~S~SK~~~~~G-~R~G~v~~-~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~ 366 (429)
..+-.|++.|.+|.++-.| +-.|.++. ++++.+.++......+..+++.....+..-++. +..+.++..+
T Consensus 191 -~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T-------l~lR~~~~~~ 262 (393)
T d1n8pa_ 191 -NFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT-------LHLRVRQAAL 262 (393)
T ss_dssp -GGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT-------HHHHHHHHHH
T ss_pred -hhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc-------hhhHHHHHHH
Confidence 1355599999999995333 55677664 566778888877777777888877666666654 5556667777
Q ss_pred HHHHHHHHhccC-CCce
Q 014172 367 RRDFLVKSFGEL-EGVK 382 (429)
Q Consensus 367 ~r~~l~~~L~~l-~g~~ 382 (429)
+...+.+.|+.. +.++
T Consensus 263 nA~~lA~~L~~~~~~V~ 279 (393)
T d1n8pa_ 263 SANKIAEFLAADKENVV 279 (393)
T ss_dssp HHHHHHHHHTSCTTTEE
T ss_pred HHHHHHHHHHhccCcEE
Confidence 888888888653 4443
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.58 E-value=1e-13 Score=135.82 Aligned_cols=235 Identities=14% Similarity=0.136 Sum_probs=158.0
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++- +|++++++.+++.+..+.. ....+...+++++....+ ..+.++++++++++++
T Consensus 50 ~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~----~~~~~~~~la~~~~~~~~---~~~~v~f~~sGseA~e 122 (427)
T d2gsaa_ 50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFG----APCALENVLAEMVNDAVP---SIEMVRFVNSGTEACM 122 (427)
T ss_dssp TSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCS----SCCHHHHHHHHHHHHHST---TCSEEEEESSHHHHHH
T ss_pred CCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccc----cchhHHHHHHHHHHhhCC---ccccccccCCcHHHHH
Confidence 688899998775 34444 7899999999987633222 123566667777776544 3478999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHH--------HcCC------------EEEEecCCCCCCCCCCHHHHHhhccc
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMAR--------IADA------------TPVILPTRISENFLLDPKVLESKLTE 227 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~--------~~g~------------~~~~v~~~~~~~~~~d~e~l~~~l~~ 227 (429)
.+++.... ....|+...-+|.+....+. ..+. ....++ . -|++.+++.+.+
T Consensus 123 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~---~~~~~le~~~~~ 195 (427)
T d2gsaa_ 123 AVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP----Y---NDLEAVKALFAE 195 (427)
T ss_dssp HHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC----T---TCHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC----c---chHHHHHHHHHh
Confidence 99887532 33678888888876432111 1111 122222 1 389999998874
Q ss_pred ---CCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChh
Q 014172 228 ---KSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKA 303 (429)
Q Consensus 228 ---~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 303 (429)
+..+|++...+.-.|. ..+.+.+++|.++|++| |+++|.||++.++.. |.. .....+.-.+| +-+++|.
T Consensus 196 ~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~-~~llI~DEv~tG~r~-g~~-~~~~~~gi~PD----i~~~gK~ 268 (427)
T d2gsaa_ 196 NPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEH-DALLVFDEVMTGFRI-AYG-GVQEKFGVTPD----LTTLGKI 268 (427)
T ss_dssp STTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHT-TCEEEEECTTTBTTT-BTT-CHHHHTTCCCS----EEEECGG
T ss_pred CCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHh-ceeeeecccccccee-ccc-chHHhcCCCHH----HHhhhhc
Confidence 3445555333444564 55777899999999999 999999999998733 321 22222221112 4558999
Q ss_pred cccccceeeEEEcCHHHHHHHHHH---hhcccCCCchHHHHHHHHHHhc
Q 014172 304 FAMTGWRLGYIAGPKHFVAACNKI---QSQFTSGASSISQKAGVAALGL 349 (429)
Q Consensus 304 ~~~~G~R~G~v~~~~~~~~~l~~~---~~~~~~~~~~~~q~aa~~~l~~ 349 (429)
+| .|..+|.+++.+++++.+... ....+++.++++.+++.+.|+.
T Consensus 269 lg-gG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~ 316 (427)
T d2gsaa_ 269 IG-GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLEL 316 (427)
T ss_dssp GG-TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHH
T ss_pred cC-CCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHH
Confidence 98 889999999999998877542 2224566788999998888874
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=1e-15 Score=152.35 Aligned_cols=283 Identities=13% Similarity=0.065 Sum_probs=170.1
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCE---------EEEcCCCCCChH
Q 014172 123 EGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDE---------VIIPAPFWVSYP 193 (429)
Q Consensus 123 ~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~---------Vlv~~p~y~~~~ 193 (429)
.+...|+.++...+|++.+++++ ..+.++++++++++...++.+++++||. +......|....
T Consensus 65 ~gd~~Y~~~~~~~~le~~~a~l~--------G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~ 136 (467)
T d2v1pa1 65 RGDEAFSGSRSYYALAESVKNIF--------GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQ 136 (467)
T ss_dssp SCCCCSSSCHHHHHHHHHHHHHT--------CCSEEEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHH
T ss_pred ccchhhcCCchHHHHHHHHHHHH--------CCCEEEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccH
Confidence 45567887777888888888875 3467889999999999999998776654 444455555667
Q ss_pred HHHHHcCCEEEEecCCCC--------CCCCCCHHHHHhhccc----CCcEEEEcCCCCC-ccCCCCHHHHHHHHHHHHhC
Q 014172 194 EMARIADATPVILPTRIS--------ENFLLDPKVLESKLTE----KSRLLILCSPSNP-TGSVYPKNLLDEIARIVAKH 260 (429)
Q Consensus 194 ~~~~~~g~~~~~v~~~~~--------~~~~~d~e~l~~~l~~----~~~~i~l~~p~NP-tG~~~~~~~l~~I~~~a~~~ 260 (429)
..+...|++++.++.+.. ....+|++.+++.+.+ .+.++++...+|. .|.+++.+++++|.++|++|
T Consensus 137 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~ 216 (467)
T d2v1pa1 137 GHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY 216 (467)
T ss_dssp HHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHc
Confidence 788899999998876531 1346899999998863 4567777777764 46888999999999999999
Q ss_pred CCeEEEEccCCcccc-c------CCCCCCccccCCC--CCCceEEEeccChhcccccceeeEEEcCHHHHHH-HHHHh--
Q 014172 261 PRLLVLSDEIYEHII-Y------APATHTSFASLPG--MWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAA-CNKIQ-- 328 (429)
Q Consensus 261 ~~i~vi~Deay~~~~-~------~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~-l~~~~-- 328 (429)
|+++|.|+++.... + .+....++..... .....++..|.+|.++ |...|+++.+++.+.. .....
T Consensus 217 -g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~--~~~gg~i~~~~~~~~~~~~~~~~~ 293 (467)
T d2v1pa1 217 -DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAM--VPMGGLLCMKDDSFFDVYTECRTL 293 (467)
T ss_dssp -TCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTC--CSSCEEEEECSGGGHHHHHHHHHH
T ss_pred -CCEEEEechhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCC--CCCceeEEecchhhhhHHHhhccc
Confidence 99999999975321 0 0001111111000 0122366667788764 5556777776543322 22111
Q ss_pred -h-----cccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceEEEEEecCCcc-C
Q 014172 329 -S-----QFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYLFIDFSTYY-G 401 (429)
Q Consensus 329 -~-----~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~~~~l~~~~-~ 401 (429)
. ....+.......++...+.... .. +..++..++.+++.+.|.+. ++.+.++.+.. +.++..... .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~-~~~~~~~~~~~ 366 (467)
T d2v1pa1 294 CVVQEGFPTYGGLEGGAMERLAVGLYDGM-NL----DWLAYRIAQVQYLVDGLEEI-GVVCQQAGGHA-AFVDAGKLLPH 366 (467)
T ss_dssp HHHTTSSCCCCCCCHHHHHHHHHHHHHTT-CH----HHHHHHHHHHHHHHHHHHHT-TCCEEEECSSC-EEEEHHHHSTT
T ss_pred ccccccCcchhhhHHHHHHHHHHHhHHhh-hH----HHHHHHHHHHHHHHHHHHhc-CCcccCCCccc-eeecchhhcCC
Confidence 1 1111233333333333343311 12 33344456677788888876 55554333322 222211110 0
Q ss_pred CcccCCCCCCChHHHHHHHHHhCCee
Q 014172 402 SEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
..... .....+..+|+.+.||.
T Consensus 367 ~~~~~----~~~~~~~~~ll~~~Gi~ 388 (467)
T d2v1pa1 367 IPADQ----FPAQALACELYKVAGIR 388 (467)
T ss_dssp SCGGG----CHHHHHHHHHHHHHCEE
T ss_pred cchhh----hhhHHHHHHHHHHcCCe
Confidence 00011 13566777788888874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.56 E-value=1.5e-13 Score=132.70 Aligned_cols=286 Identities=14% Similarity=0.129 Sum_probs=182.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCC
Q 014172 108 DTPVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAP 187 (429)
Q Consensus 108 ~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p 187 (429)
..|++|++++.+. ..++++. ...++.+.+.+.+++..|.+ +.+.|+++.|+|.+++.++..++.+|+.|++..-
T Consensus 27 ~~~~~V~~Am~~~---~~~hr~~--ef~~i~~~~r~~L~~ll~~~-~~~~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~ 100 (388)
T d2ch1a1 27 NCSKRVLTAMTNT---VLSNFHA--ELFRTMDEVKDGLRYIFQTE-NRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVN 100 (388)
T ss_dssp CCCHHHHHHTTSC---CCCTTCH--HHHHHHHHHHHHHHHHHTCC-CSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCHHHHHHhCcC---CCCCCCH--HHHHHHHHHHHHHHHHhCCC-CCeEEEEcCcHHHHHHHHHHHhcccccccccccc
Confidence 4478888876432 1233422 23455566666666666742 3345667778999999999999999999998877
Q ss_pred CCCChH--HHHHHcCCEEEEecCCCCCCCCCCHHHHHhhc-ccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeE
Q 014172 188 FWVSYP--EMARIADATPVILPTRISENFLLDPKVLESKL-TEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLL 264 (429)
Q Consensus 188 ~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l-~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~ 264 (429)
.+.+.. ..++..+...+.+...+.. ..+.+.+++.. ..+++++++++-+|.||...+ +++|.++|+++ +.+
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~---~~~i~~~~~~~-~~~ 174 (388)
T d2ch1a1 101 GIWAERAVEMSERYGADVRTIEGPPDR--PFSLETLARAIELHQPKCLFLTHGDSSSGLLQP---LEGVGQICHQH-DCL 174 (388)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCTTS--CCCHHHHHHHHHHHCCSEEEEESEETTTTEECC---CTTHHHHHHHT-TCE
T ss_pred ccccccchhhhhhhccccccccccccc--ccchhhhhhhhccCCcceeeeeecccccccccc---hhhhcchhccc-cce
Confidence 665543 4566778888888775433 36777776665 458899999999999999999 88899999999 999
Q ss_pred EEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHh----------------
Q 014172 265 VLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQ---------------- 328 (429)
Q Consensus 265 vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~---------------- 328 (429)
+++|.+.+.. ..+..+.. ++.++++.|-.|.++ +...+|+++..++.++......
T Consensus 175 ~~vD~~ss~g----~~pid~~~----~~~d~~~~s~~K~~~-gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (388)
T d2ch1a1 175 LIVDAVASLC----GVPFYMDK----WEIDAVYTGAQKVLG-APPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNY 245 (388)
T ss_dssp EEEECTTTBT----TBCCCTTT----TTCCEEECCCC-CCC-CCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHH
T ss_pred eeeeeeeccc----ccccchhc----cCceEEEEccccccC-CCCeEEEEeccHHHHHhhhcccCccccccccchhhhhh
Confidence 9999998862 22222222 456688899999885 3334788888887776553211
Q ss_pred -------hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC----CceEEEEEecC
Q 014172 329 -------SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP----QGAFYLFIDFS 397 (429)
Q Consensus 329 -------~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p----~~~~~~~~~l~ 397 (429)
..+...++.....++..++... .........++.+.........+... ++....+ .+...+.+.+|
T Consensus 246 ~~~~~~~~~~~~t~~~~~i~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rs~~v~~~~~p 322 (388)
T d2ch1a1 246 WGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIP 322 (388)
T ss_dssp TTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECC
T ss_pred hcccccccccCccchHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHhhhhhc-ccccccCCHHHhCCeEEEEECC
Confidence 0112233444444444444320 01223333344444444445544443 2222211 22334667887
Q ss_pred CccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 398 TYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+. .+..++...|++++||.|
T Consensus 323 ~g-----------~~~~~l~~~l~~~~gI~v 342 (388)
T d2ch1a1 323 KG-----------VDWWKVSQYAMNNFSLEV 342 (388)
T ss_dssp TT-----------CCHHHHHHHHHHHHCBCC
T ss_pred CC-----------CCHHHHHHHHhhcCCEEE
Confidence 53 378899999999989875
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.55 E-value=2.4e-14 Score=142.04 Aligned_cols=232 Identities=15% Similarity=0.051 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHH-cCCEEEEecC--CC
Q 014172 134 TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARI-ADATPVILPT--RI 210 (429)
Q Consensus 134 ~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~--~~ 210 (429)
..++++.+|+++ | ..+.+++++|++.++..++.++++|||+|+++..+|.+....+.. .+..++.++. ++
T Consensus 68 i~eae~~~A~~~----g---a~~a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~ 140 (462)
T d1c4ka2 68 AVAAEKHAARVY----N---ADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNP 140 (462)
T ss_dssp HHHHHHHHHHHT----T---CSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECT
T ss_pred HHHHHHHHHHHh----C---CCeEEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeeccccc
Confidence 457777777775 3 223455667778888888999999999999999999988775544 4555555433 22
Q ss_pred CCC------CCCCHHHH---------HhhcccCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccc
Q 014172 211 SEN------FLLDPKVL---------ESKLTEKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHII 275 (429)
Q Consensus 211 ~~~------~~~d~e~l---------~~~l~~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~ 275 (429)
.+. ..++.+.+ ++++..+++.+++.+.+|..|.+.+ +++|+++|++| +++|++|++|....
T Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d---l~~I~~ia~~~-g~~l~vD~A~~~~~ 216 (462)
T d1c4ka2 141 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN---AHEVVKRIGHL-CDYIEFDSAWVGYE 216 (462)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC---HHHHHHHHGGG-BSEEEEECTTCCGG
T ss_pred ccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh---HHHHHHHHHHc-CCEEEEechhhccc
Confidence 110 11233333 3334456666666666677999999 99999999999 99999999998532
Q ss_pred -cCCCCCCccccCC----CCCCceEEEeccChhcccccceeeEEE-cCHHHH---------HHHHHHhhcc-cCCCchHH
Q 014172 276 -YAPATHTSFASLP----GMWERTLTVNGFSKAFAMTGWRLGYIA-GPKHFV---------AACNKIQSQF-TSGASSIS 339 (429)
Q Consensus 276 -~~~~~~~~~~~~~----~~~~~~i~~~S~SK~~~~~G~R~G~v~-~~~~~~---------~~l~~~~~~~-~~~~~~~~ 339 (429)
+.+....+..... ...+.++++.|++|.++.++ .|.++ ..+..+ ..+.+....+ +.+++...
T Consensus 217 ~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp~~~~ 294 (462)
T d1c4ka2 217 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPM 294 (462)
T ss_dssp GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHH
T ss_pred cccCcCCcchhhccccccccCCccEEEEecCccccccc--ceEEEEeccccccccchhhhHHHHHHhhhhcccCCchHHH
Confidence 2222122221111 12345799999999997443 34443 333221 2233322222 22334433
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCC
Q 014172 340 QKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEG 380 (429)
Q Consensus 340 q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g 380 (429)
...+..+.... ..+..+++.++..++...+++++.++.+
T Consensus 295 ~asl~~a~~~~--~~~~g~~l~~~~~~~a~~~r~~l~~~~~ 333 (462)
T d1c4ka2 295 YAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGS 333 (462)
T ss_dssp HHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333210 1334555666667777777777776533
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=4.3e-13 Score=132.87 Aligned_cols=293 Identities=11% Similarity=0.046 Sum_probs=193.4
Q ss_pred hHHHHH-HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCC-------CCCcEEEecChHHHHHHHHHHhcC----
Q 014172 110 PVLIAE-AGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSY-------TPDQILVSNGAKQSILQAVLAVCS---- 177 (429)
Q Consensus 110 p~~v~~-a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~-------~~~~i~~t~G~~~al~~~l~~l~~---- 177 (429)
++.++. .+...+......|..++...++.+.+.+|+.+..|.+- ....-++|+|+++++..++.+..+
T Consensus 86 ~~~~l~~~~~~~~n~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~ 165 (476)
T d1js3a_ 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR 165 (476)
T ss_dssp HHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHH
Confidence 444444 44555544444454455667899999999999999642 123568999999988887765321
Q ss_pred ------CC---------CEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccC------CcEEEEcC
Q 014172 178 ------PG---------DEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTEK------SRLLILCS 236 (429)
Q Consensus 178 ------~g---------d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~------~~~i~l~~ 236 (429)
.| -.|++++-+|.+...++...|..++.+|++ +++.+|++.|++.+++. +-+|+.+.
T Consensus 166 ~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d--~~~~md~~~L~~~i~~~~~~g~~p~~Vvata 243 (476)
T d1js3a_ 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATL 243 (476)
T ss_dssp HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred hhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccC--CCCCcCHHHHHHHHHHHHhcCCCcEEEeecC
Confidence 11 147888999999999999999999999986 45679999999999642 34566688
Q ss_pred CCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 237 PSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 237 p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
.++.||.+-| +++|+++|++| ++|+.+|.+|+++.......... +.+.....-+..+++|.++.| ...|+++.
T Consensus 244 Gtt~~G~iDp---l~~I~~i~~~~-~~wlHVDAA~Gg~~~~~~~~~~~--~~gi~~aDSit~d~HK~l~~P-~~~g~~l~ 316 (476)
T d1js3a_ 244 GTTSCCSFDN---LLEVGPICHEE-DIWLHVDAAYAGSAFICPEFRHL--LNGVEFADSFNFNPHKWLLVN-FDCSAMWV 316 (476)
T ss_dssp SCTTTCCBCC---HHHHHHHHHHT-TCEEEEECTTGGGGGGSTTTGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEEE
T ss_pred CCccceeecc---HHHHHHHHHhc-CcEEEEecccchhhhhhcchhhh--hcCCcccceeeecCccccccC-Ccceeecc
Confidence 8999999999 99999999999 99999999998765322211111 111122336677899998755 45677766
Q ss_pred CH-HHHHHH--------HHHhh---------cccC-C---CchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 014172 317 PK-HFVAAC--------NKIQS---------QFTS-G---ASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKS 374 (429)
Q Consensus 317 ~~-~~~~~l--------~~~~~---------~~~~-~---~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~ 374 (429)
.+ ...... ..... .++. + ...+...++...+ +.+.++++.++..+..+++.+.
T Consensus 317 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al~lw~~l~~~-----G~~g~~~~i~~~~~lA~~l~~~ 391 (476)
T d1js3a_ 317 KRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMY-----GVKGLQAYIRKHVQLSHEFEAF 391 (476)
T ss_dssp SCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhcChhhhccccccccccccccccccccchhhHHHHHHHHHHHH-----hHhHHHHHHHHHHHHHHHHHHH
Confidence 53 222111 00000 0011 1 1122223333333 3577888888888899999999
Q ss_pred hccCCCceee-cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 375 FGELEGVKMS-EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 375 L~~l~g~~~~-~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
|++.|++++. +|+-+. +.+++... . .-..++.++|.+.+.+.
T Consensus 392 l~~~~~fel~~~p~l~i-V~Fr~~~~-d---------~~n~~l~~~l~~~G~~~ 434 (476)
T d1js3a_ 392 VLQDPRFEVCAEVTLGL-VCFRLKGS-D---------GLNEALLERINSARKIH 434 (476)
T ss_dssp HHHCTTEEECSCCCSSE-EEEEESSC-H---------HHHHHHHHHHHHHTSCB
T ss_pred HhcCCCeEEECCCceEE-EEEEccCC-h---------HHHHHHHHHHHhcCCEE
Confidence 9999899887 455665 55666421 0 01357788877775443
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.53 E-value=8.9e-13 Score=128.18 Aligned_cols=310 Identities=14% Similarity=0.074 Sum_probs=184.2
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+..||+..|. ..++- +|++.+++.+.+.+. .|..........+.+++.+....+ .+.+.++.+++++..
T Consensus 37 dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~sgs~a~~ 110 (404)
T d1z7da1 37 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--TICSRAFFSVPLGICERYLTNLLG----YDKVLMMNTGAEANE 110 (404)
T ss_dssp TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTC--SCCCTTSEEHHHHHHHHHHHHHHT----CSEEEEESSHHHHHH
T ss_pred CCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhC--CCcccccchHHHHHHHHhhhhccc----cceeeeeccccchHH
Confidence 578899998775 34443 789999999988652 222221223334445555554433 467899999999999
Q ss_pred HHHHHhc----------CCCCEEEEcCCCCCChHHHHHHcCC-EE---EEecCCCC--CCCCCCHHHHHhhcccC-CcEE
Q 014172 170 QAVLAVC----------SPGDEVIIPAPFWVSYPEMARIADA-TP---VILPTRIS--ENFLLDPKVLESKLTEK-SRLL 232 (429)
Q Consensus 170 ~~l~~l~----------~~gd~Vlv~~p~y~~~~~~~~~~g~-~~---~~v~~~~~--~~~~~d~e~l~~~l~~~-~~~i 232 (429)
.+++... .....++.....|............ .. ...|..+. ..-.-+.+.++..+.+. +.+|
T Consensus 111 ~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAav 190 (404)
T d1z7da1 111 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNVCAF 190 (404)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCEEEE
Confidence 8877642 1124677777777654433222211 00 01110000 00012677777777654 4455
Q ss_pred EEcCCCCCccCC-CCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhccccc-ce
Q 014172 233 ILCSPSNPTGSV-YPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTG-WR 310 (429)
Q Consensus 233 ~l~~p~NPtG~~-~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G-~R 310 (429)
++...+...|.. .+++.+++|.++|++| |+++|.||++.+|...|. ...+..+.-..| +-+++|.++ .| ..
T Consensus 191 i~EPi~g~~G~~~~~~~fl~~l~~lc~~~-g~llI~DEV~tGfgRtG~-~~~~e~~gv~PD----ivt~gK~l~-gG~~p 263 (404)
T d1z7da1 191 IVEPIQGEAGVIVPSDNYLQGVYDICKKY-NVLFVADEVQTGLGRTGK-LLCVHHYNVKPD----VILLGKALS-GGHYP 263 (404)
T ss_dssp EECSSBSTTTSBCCCTTHHHHHHHHHHHT-TCEEEEECTTTTTTTTSS-SSGGGGGTCCCS----EEEECGGGG-TTSSC
T ss_pred EEEEEcCCCCCccCCHHHHHHHHHHHHHc-CCEEEEEcCccCCCcccc-cccccccCCCCC----EEEEccccc-CCCCC
Confidence 554345556755 5667799999999999 999999999987643332 122222222122 447999998 55 78
Q ss_pred eeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecCCceE
Q 014172 311 LGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEPQGAF 390 (429)
Q Consensus 311 ~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~ 390 (429)
+|.+++.+++.+.+.......+++.++++..++.+.|+.-. .++..++..+.-+..++.+.+.+++.+.+.-+...|.|
T Consensus 264 ~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg~Gl~ 342 (404)
T d1z7da1 264 ISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLI-NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLL 342 (404)
T ss_dssp CEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTE
T ss_pred cccccchHHHHccCCCCCcCcCCCCCcchhhhhhhhhhhhh-cchhhhhhccchhHHHHHHHHHHhcCCCeEEEEeeCcE
Confidence 99999999998877666555667788999999988886411 12334444444455556666666666555444555555
Q ss_pred EEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 391 YLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.+... ..+..+++.+|+++ ||.+
T Consensus 343 -~~i~~~~~----------~~~~~~~~~~l~~~-Gl~~ 368 (404)
T d1z7da1 343 -CAIEFKNE----------LVNVLDICLKLKEN-GLIT 368 (404)
T ss_dssp -EEEEECTT----------TCCHHHHHHHHHHT-TEEC
T ss_pred -EEEEEcCC----------cccHHHHHHHHHhC-CeEE
Confidence 44555432 12567889998877 8765
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.8e-13 Score=134.18 Aligned_cols=321 Identities=11% Similarity=0.053 Sum_probs=188.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++- +|++.+++.+++.+..+ ........+....+++.+.+..... ..+.++++++++++..
T Consensus 38 dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-~~~~~~~~~~~~~la~~l~~~~p~~-~~~~v~f~~sGseA~e 115 (425)
T d1sffa_ 38 EGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSH-TCFQVLAYEPYLELCEIMNQKVPGD-FAKKTLLVTTGSEAVE 115 (425)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSC-CCTTTEECHHHHHHHHHHHHHSSCS-SCEEEEEESSHHHHHH
T ss_pred CCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCC-cccccccCcHHHHHHHHHHhhhhhc-ccceeeeeccccchhh
Confidence 578899998875 44554 78999999998865321 1111222455566777776654311 1357999999999999
Q ss_pred HHHHHhcC--CCCEEEEcCCCCCChHHHHHH-cCC-------------EEEEecCC--CCCCCCCC----HHHHHhhc--
Q 014172 170 QAVLAVCS--PGDEVIIPAPFWVSYPEMARI-ADA-------------TPVILPTR--ISENFLLD----PKVLESKL-- 225 (429)
Q Consensus 170 ~~l~~l~~--~gd~Vlv~~p~y~~~~~~~~~-~g~-------------~~~~v~~~--~~~~~~~d----~e~l~~~l-- 225 (429)
.+++.... .-..|+...-+|.+....+.. .|. .....+.+ ..+..... .+.+....
T Consensus 116 ~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (425)
T d1sffa_ 116 NAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAA 195 (425)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCC
T ss_pred hHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhccc
Confidence 99887532 236788888888876554433 221 11122211 11110000 11111111
Q ss_pred ccCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhc
Q 014172 226 TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAF 304 (429)
Q Consensus 226 ~~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 304 (429)
..+..+|++...+...|. ..+++.++.|.++|++| |+++|.||++.++...|.. .....+.-..| +.+++|.+
T Consensus 196 ~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~-gillI~DEV~tG~gR~g~~-~a~~~~gv~PD----i~~~gK~l 269 (425)
T d1sffa_ 196 PEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEH-GIMLIADEVQSGAGRTGTL-FAMEQMGVAPD----LTTFAKSI 269 (425)
T ss_dssp GGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGTTSCCS----EEEECGGG
T ss_pred ccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHc-CceEEeccccccCCCcchh-hHHHhcCCCcc----ceeccccc
Confidence 123445555444444565 56788899999999999 9999999999985433321 12222211122 55599999
Q ss_pred ccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceee
Q 014172 305 AMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMS 384 (429)
Q Consensus 305 ~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~ 384 (429)
+ .|+.+|.+++++++++.+.......+++.++++.+++.+.|+.-. .++..++..+.-+..++.+.+.+++.+-+.-+
T Consensus 270 ~-gG~P~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~-~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~v 347 (425)
T d1sffa_ 270 A-GGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFE-QENLLQKANDLGQKLKDGLLAIAEKHPEIGDV 347 (425)
T ss_dssp G-TSSCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred C-CCcceEEEEEcHHHHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHH-HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEE
Confidence 8 789999999999998877665555677788999999999887510 01223334344444455555555555444444
Q ss_pred cCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 385 EPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 385 ~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
...|.++ .+.+...... ......-...+.++|+++ ||.+
T Consensus 348 rg~Gl~~-~i~f~~~~~~---~~~~~~~~~~~~~~l~~~-Gvl~ 386 (425)
T d1sffa_ 348 RGLGAMI-AIELFEDGDH---NKPDAKLTAEIVARARDK-GLIL 386 (425)
T ss_dssp EEETTEE-EEEEBGGGCT---TSBCHHHHHHHHHHHHHT-TEEC
T ss_pred EccccEE-EEEEeccCcc---CCccHHHHHHHHHHHHHC-CCEE
Confidence 5556553 3443211000 000001135677888876 7764
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=5.4e-12 Score=123.35 Aligned_cols=308 Identities=12% Similarity=0.068 Sum_probs=187.4
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCC-CHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAG-TLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G-~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.|+.+||+..|. ..++- +|++.+++.+.+.+.. |....+ ..+-...+++++....+ ...+.+++++++++++
T Consensus 41 dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~v~f~~sGseA~ 116 (429)
T d1s0aa_ 41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS--HVMFGGITHAPAIELCRKLVAMTP--QPLECVFLADSGSVAV 116 (429)
T ss_dssp TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCS--CCCCSSEECHHHHHHHHHHHHHSC--TTCCEEEEESSHHHHH
T ss_pred CCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcC--CcccCCccchHHHHHHHHHHhhhc--cCcceeeeccccccch
Confidence 578899998875 34554 7999999999887632 221111 12334444555544433 2446899999999999
Q ss_pred HHHHHHhc-------CCCCEEEEcCCCCCChHHHHH-HcCC-------------EEEEecCCC-CCCCCC---CHHHHHh
Q 014172 169 LQAVLAVC-------SPGDEVIIPAPFWVSYPEMAR-IADA-------------TPVILPTRI-SENFLL---DPKVLES 223 (429)
Q Consensus 169 ~~~l~~l~-------~~gd~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~-~~~~~~---d~e~l~~ 223 (429)
..+++... ....+|+...-+|.+....+. ..|. .....|... ...... +++.+++
T Consensus 117 e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (429)
T d1s0aa_ 117 EVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFAR 196 (429)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHH
T ss_pred hhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhh
Confidence 98887652 223578888888776443332 2221 122222211 111112 3445444
Q ss_pred hcc---cCCcEEEEcCC-CCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEe
Q 014172 224 KLT---EKSRLLILCSP-SNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVN 298 (429)
Q Consensus 224 ~l~---~~~~~i~l~~p-~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~ 298 (429)
.+. ++..+|++.-. ++-.|. ..+++.+++|.++|++| |+++|.||++.++...|.. .....+.-..| +.
T Consensus 197 ~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfGRtG~~-~~~~~~~v~PD----i~ 270 (429)
T d1s0aa_ 197 LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDRE-GILLIADEIATGFGRTGKL-FACEHAEIAPD----IL 270 (429)
T ss_dssp HHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSS-SGGGGGTCCCS----EE
T ss_pred hhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHc-Ccceehhhccccccccccc-cccccceeccc----cc
Confidence 443 34555555433 354554 56889999999999999 9999999999987433321 12222211112 55
Q ss_pred ccChhcccccceeeEEEcCHHHHHHHHHHh-----hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q 014172 299 GFSKAFAMTGWRLGYIAGPKHFVAACNKIQ-----SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVK 373 (429)
Q Consensus 299 S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~-----~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~ 373 (429)
+++|.++-.+..+|.+++.+++.+.+.... ...+++.++++.+++.+.|+. .++ ++..+..++.-+++.+
T Consensus 271 ~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~---i~~--~~~~~~~~~~g~~l~~ 345 (429)
T d1s0aa_ 271 CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAI---LES--GDWQQQVADIEVQLRE 345 (429)
T ss_dssp EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHH---HHT--CHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccc---ccc--ccccchhhHHHHHHHH
Confidence 589999744589999999999998876432 234666788999999888875 111 1344444555556666
Q ss_pred HhccC---CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 374 SFGEL---EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 374 ~L~~l---~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
.|+++ +.+.-++..|.| +-+++... .+...+...|+++ ||.+
T Consensus 346 ~L~~l~~~~~v~~vrg~Gl~-~~~e~~~~-----------~~~~~~~~~~~~~-Gl~~ 390 (429)
T d1s0aa_ 346 QLAPARDAEMVADVRVLGAI-GVVETTHP-----------VNMAALQKFFVEQ-GVWI 390 (429)
T ss_dssp HHGGGGGCTTEEEEEEETTE-EEEEESSC-----------BCHHHHHHHHHHT-TEEC
T ss_pred HHHHhccCCceEEEeecccE-EEEEecCc-----------ccHHHHHHHHHHC-CcEE
Confidence 66554 344434445544 45666432 2577888888877 8865
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.39 E-value=1.4e-11 Score=120.63 Aligned_cols=318 Identities=11% Similarity=0.037 Sum_probs=183.8
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREGFTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
.|+.+||+..|. ..++- +|++.+++.+.+++.. |.......+.+..+|+.|.+.... ..+.++++++++++++
T Consensus 39 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~--~~~~~~~~~~~~~la~~L~~~~~~--~~~~v~f~~sGseA~e 114 (431)
T d1zoda1 39 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD--HLFSEMLSRPVVDLATRLANITPP--GLDRALLLSTGAESNE 114 (431)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCC--CCCTTCCCHHHHHHHHHHHHHSCT--TCCEEEEESCHHHHHH
T ss_pred CCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcc--ccccccccHHHHHHHHHHHHhCCc--ccceeeecccccchHH
Confidence 578899998774 45555 7999999999987643 222222344556677777665432 3478999999999999
Q ss_pred HHHHHhc--CCCCEEEEcCCCCCChHHHHHHcCC------------EEEEecCCCCC-------CCCCCH---HHHHhhc
Q 014172 170 QAVLAVC--SPGDEVIIPAPFWVSYPEMARIADA------------TPVILPTRISE-------NFLLDP---KVLESKL 225 (429)
Q Consensus 170 ~~l~~l~--~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~~~-------~~~~d~---e~l~~~l 225 (429)
.+++... ...+.|+...-+|.+....+...+. ....++..... ....+. +.+...+
T Consensus 115 ~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (431)
T d1zoda1 115 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 194 (431)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHH
Confidence 9988752 2337788888888876554433221 12222211100 000122 2232222
Q ss_pred ----ccCCcEEEEcCCCCCccC-CCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEecc
Q 014172 226 ----TEKSRLLILCSPSNPTGS-VYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGF 300 (429)
Q Consensus 226 ----~~~~~~i~l~~p~NPtG~-~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 300 (429)
..+..+|++...+.-.|. ..+++.+++|.++|++| |+++|.||++.++...|... ....+.-..| +.++
T Consensus 195 ~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~-gillI~DEV~tG~gRtG~~~-~~~~~gv~PD----i~~~ 268 (431)
T d1zoda1 195 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEAR-GMLLILDEAQTGVGRTGTMF-ACQRDGVTPD----ILTL 268 (431)
T ss_dssp HHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHH-TCEEEEECTTTTTTTTSSSS-THHHHTCCCS----EEEE
T ss_pred HHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhc-CceEEecccccccccccccc-ccccCCCCcc----hhcc
Confidence 123445544333333454 46888999999999999 99999999999864443221 1111111112 5558
Q ss_pred ChhcccccceeeEEEcCHHHHHHHHHHh--hcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccC
Q 014172 301 SKAFAMTGWRLGYIAGPKHFVAACNKIQ--SQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGEL 378 (429)
Q Consensus 301 SK~~~~~G~R~G~v~~~~~~~~~l~~~~--~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l 378 (429)
+|.++ .|..+|.+++.+++.+...... ...+++.++++..++.+.|+.-. .++.+++..+.-+..++.+.+.+.+.
T Consensus 269 gK~l~-gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~-~~~~~~~~~~~g~~l~~~l~~~~~~~ 346 (431)
T d1zoda1 269 SKTLG-AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ-RDGLVARANVMGDRLRRGLLDLMERF 346 (431)
T ss_dssp CHHHH-TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccc-cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhhhhhcC
Confidence 99998 8899999999998887765432 23456678888888877776310 12334444433344444455555555
Q ss_pred CCceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHHHhCCee
Q 014172 379 EGVKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVL 427 (429)
Q Consensus 379 ~g~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~ 427 (429)
+-+.-++..|.|+ -+.+......... ...-...+.+.|+++ |+.
T Consensus 347 ~~i~~vrG~Glm~-~ie~~~~~~~~~~---~~~~~~~i~~~~~~~-Gl~ 390 (431)
T d1zoda1 347 DCIGDVRGRGLLL-GVEIVKDRRTKEP---ADGLGAKITRECMNL-GLS 390 (431)
T ss_dssp TTEEEEEEETTEE-EEEEEEETTTTEE---CTTHHHHHHHHHHHT-TEE
T ss_pred CCeEEEeecceEE-EEEEecCCcccCc---cHHHHHHHHHHHHHh-Ccc
Confidence 4344345555553 2333110000000 001246678888776 664
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.24 E-value=5.3e-11 Score=117.31 Aligned_cols=305 Identities=11% Similarity=-0.001 Sum_probs=169.1
Q ss_pred cCCCeEEcCCCC--CCCCC-hHHHHHHHHHHHHcC----CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH
Q 014172 93 AGVSVIRLAAGE--PDFDT-PVLIAEAGINAIREG----FTRYTPNAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK 165 (429)
Q Consensus 93 ~g~~~i~L~~g~--~~~~~-p~~v~~a~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~ 165 (429)
.|+.+||+..|. ..++- +|++.+++.+.++.. ...+ .......+.+.+++.+.+..+ -..+.++++++++
T Consensus 51 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~-~~~~~~~~a~~lae~l~~~~~--~~~~~v~f~~sGs 127 (461)
T d1ohwa_ 51 DGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPAL-GILPPENFVEKLRESLLSVAP--KGMSQLITMACGS 127 (461)
T ss_dssp TSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCT-TTSCBTTHHHHHHHTGGGGCC--TTCCEEEEESSHH
T ss_pred CCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccc-cccchHHHHHHHHHHHHhhhc--cCcceeeeecchh
Confidence 678899998765 33443 678888888765431 1111 112234566777777765433 2346899999999
Q ss_pred HHHHHHHHHhc----------------------------CCCCEEEEcCCCCCChHHHHHH-cCCE-----------EEE
Q 014172 166 QSILQAVLAVC----------------------------SPGDEVIIPAPFWVSYPEMARI-ADAT-----------PVI 205 (429)
Q Consensus 166 ~al~~~l~~l~----------------------------~~gd~Vlv~~p~y~~~~~~~~~-~g~~-----------~~~ 205 (429)
++++.+++... .+...|+...-+|++....+.. .|-. ...
T Consensus 128 eAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~ 207 (461)
T d1ohwa_ 128 CSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 207 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCE
T ss_pred hhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcc
Confidence 99999887642 1234788888888875433332 2211 011
Q ss_pred ecCCCC-CCC-----------CCCHHHHHhhcc------cCCcEEEEcCCCCCcc-CCCCHHHHHHHHHHHHhCCCeEEE
Q 014172 206 LPTRIS-ENF-----------LLDPKVLESKLT------EKSRLLILCSPSNPTG-SVYPKNLLDEIARIVAKHPRLLVL 266 (429)
Q Consensus 206 v~~~~~-~~~-----------~~d~e~l~~~l~------~~~~~i~l~~p~NPtG-~~~~~~~l~~I~~~a~~~~~i~vi 266 (429)
.+.... ... ..+.+.+++.+. .++.+|++...+...| ...+++.+++|.++|++| |+++|
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~-gillI 286 (461)
T d1ohwa_ 208 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKH-GCAFL 286 (461)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHT-TCEEE
T ss_pred cccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhh-Cccee
Confidence 111000 000 012345555442 2345555544455455 556788899999999999 99999
Q ss_pred EccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHHHHHHHHhhcccCCCchHHHHHHHHH
Q 014172 267 SDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACNKIQSQFTSGASSISQKAGVAA 346 (429)
Q Consensus 267 ~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~~~l~~~~~~~~~~~~~~~q~aa~~~ 346 (429)
.||++.++...|. ...+..+.-...-+ +-+++|.++ . |++.....+.. ........+++.++++..++.+.
T Consensus 287 ~DEV~tG~gRtG~-~~~~e~~gi~~~PD--iv~~gK~l~-~----g~~~~~~~~~~-~~~~~~~~T~~g~p~~~aaa~a~ 357 (461)
T d1ohwa_ 287 VDEVQTGGGSTGK-FWAHEHWGLDDPAD--VMTFSKKMM-T----GGFFHKEEFRP-NAPYRIFNTWLGDPSKNLLLAEV 357 (461)
T ss_dssp EECTTTCSSTTSS-SSGGGGGCCSSCCS--EEEECGGGS-S----EEEEECGGGSC-SSTTSSCCSCSSCHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccCch--hhhhhhccc-c----ccccccccccc-ccccccccccccccccchhhccc
Confidence 9999998754443 12222221110112 336899986 3 34433332211 11122334556678888888888
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHhcc----CCC-ceeecCCceEEEEEecCCccCCcccCCCCCCChHHHHHHHH
Q 014172 347 LGLGYAGGEVVSKMVKAFRERRDFLVKSFGE----LEG-VKMSEPQGAFYLFIDFSTYYGSEAEGFGKIENSESLCRYLL 421 (429)
Q Consensus 347 l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~----l~g-~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll 421 (429)
|+. .++ +++.+..++.-+++.+.|.+ .|. +.-++..|-| +-++++.. ....+++..|+
T Consensus 358 l~~---i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~Gl~-~~ie~~~~-----------~~~~~i~~~~~ 420 (461)
T d1ohwa_ 358 INI---IKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTF-CSFDTPDE-----------SIRNKLISIAR 420 (461)
T ss_dssp HHH---HHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTE-EEEECSSH-----------HHHHHHHHHHH
T ss_pred chh---hhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeeeeEE-EEEEcCCH-----------HHHHHHHHHHH
Confidence 874 111 12233333333444444443 333 3333444444 56777643 13567888888
Q ss_pred HhCCeec
Q 014172 422 DKAQVLL 428 (429)
Q Consensus 422 ~~~gV~v 428 (429)
++ ||.+
T Consensus 421 ~~-Gll~ 426 (461)
T d1ohwa_ 421 NK-GVML 426 (461)
T ss_dssp HT-TEEC
T ss_pred HC-CeEE
Confidence 77 8865
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.15 E-value=1.6e-10 Score=110.07 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=125.3
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCCC------CCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChH-HHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFTR------YTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAK-QSI 168 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~------Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~-~al 168 (429)
..||+.|- ...|++|++++.+.+.+.... .+. +.-..++.+.+.+.+.+.++.+ +...|++++|++ .++
T Consensus 4 ~~~F~pGP--~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~-~~~~i~~~~gs~t~~~ 80 (361)
T d2c0ra1 4 AYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNP-TGYKVLFIQGGASTQF 80 (361)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCC-SSEEEEEESSHHHHHH
T ss_pred CcccCCCC--cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCCchHHH
Confidence 45664443 345899999999876331100 010 1123466666777888888853 334788877765 445
Q ss_pred HHHHHHhcCCCCEEEEcCCCCC--ChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCC
Q 014172 169 LQAVLAVCSPGDEVIIPAPFWV--SYPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 169 ~~~l~~l~~~gd~Vlv~~p~y~--~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~ 246 (429)
..++..+..+|+.+++..-... .+...++..|..++.+...... .++++.+++.+...+ ... .+|.||...+
T Consensus 81 ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~---v~~~tg~~~~ 154 (361)
T d2c0ra1 81 AMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASN--YMTLPKLQEIQLQDN-AAY---LHLTSNETIE 154 (361)
T ss_dssp HHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGT--TCSCCCGGGCCCCTT-EEE---EEEESEETTT
T ss_pred HHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeecccccc--ccchhhhhhhcccCc-ceE---EEEeccccee
Confidence 6666677888988876654322 2346778889999888876433 367888887766543 333 3577999998
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccc
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGW 309 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~ 309 (429)
+++|.++|+++ |+++++|.+.+. +..+..+..+ .+.+.|.+|.++++|.
T Consensus 155 ---~~~i~~~~~~~-~al~~vDavss~----g~~~id~~~~------di~~~s~~k~~~~~~~ 203 (361)
T d2c0ra1 155 ---GAQFKAFPDTG-SVPLIGDMSSDI----LSRPFDLNQF------GLVYAGAQKNLGPSGV 203 (361)
T ss_dssp ---TEECSSCCCCT-TSCEEEECTTTT----TSSCCCGGGC------SEEEEETTTTTCCSSC
T ss_pred ---cceEEEeeccC-CceEEEEeeccc----cccccccccc------eeEEEecccccccccC
Confidence 67788999999 999999999875 3333333322 3667788999987764
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.03 E-value=1.5e-08 Score=97.79 Aligned_cols=304 Identities=16% Similarity=0.217 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhcCCC--eEEcCCCCCCCCChHHHHHHHHH-HHHcCCCCCCC--CCCCHHHHHHHHHHHHhhcCCCCCCC
Q 014172 82 AITDQATALAQAGVS--VIRLAAGEPDFDTPVLIAEAGIN-AIREGFTRYTP--NAGTLELRSAICHKLKEENGLSYTPD 156 (429)
Q Consensus 82 ~~~~~~~~~~~~g~~--~i~L~~g~~~~~~p~~v~~a~~~-~~~~~~~~Y~~--~~G~~~lr~~ia~~l~~~~g~~~~~~ 156 (429)
++.+...++.+.... .--++.|--+.-.|+.+.+.+.+ .+-..++-|.| ++|..++.-.+..++.+..|.+ .-
T Consensus 49 e~~r~~~~ls~kN~~~~~~fig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd--~~ 126 (437)
T d1wyua1 49 KVLEELRRLAAQNLPAHKAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLE--IA 126 (437)
T ss_dssp HHHHHHHHHHHTSCCCTTCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSS--EE
T ss_pred HHHHHHHHHHhCCCCcCccccCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCC--cc
Confidence 455555566554422 12344555555556665433222 11222344444 3677777777778888777753 23
Q ss_pred cEEEecChHHHHHHHHHHhc-CCCCEEEEcCCCCCChHHH----HHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcE
Q 014172 157 QILVSNGAKQSILQAVLAVC-SPGDEVIIPAPFWVSYPEM----ARIADATPVILPTRISENFLLDPKVLESKLTEKSRL 231 (429)
Q Consensus 157 ~i~~t~G~~~al~~~l~~l~-~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~ 231 (429)
+.-.-.|++.....++.+.. ...+.++++.-.++.+... ++..|.+++.++.+... .+.++ +.+++.+
T Consensus 127 n~s~~~ga~a~~~~~~~~~~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~---~~~~~----~~~~~Aa 199 (437)
T d1wyua1 127 NASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR---TPLPE----VGEEVGA 199 (437)
T ss_dssp CSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB---CCCCC----CCTTEEE
T ss_pred ccCchHHHHHHHHHHHHHHhhhcccccccccccChHHhhhhhhhcccceeeEEeeeccccc---chhhh----hccceeE
Confidence 44455677776665554432 2457899999888876543 56789999999975322 23222 5678899
Q ss_pred EEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc----cc
Q 014172 232 LILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA----MT 307 (429)
Q Consensus 232 i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~----~~ 307 (429)
|++.+||. .|..-+ +++|.+++++. |.+++.|..-. ...+-. + ++..+-+|++++ +|.|| ..
T Consensus 200 vmi~~Pnt-~G~~ed---~~~i~~~~h~~-G~l~~~~ad~~--al~~l~--~----Pg~~GaDi~~g~-~q~fg~p~g~G 265 (437)
T d1wyua1 200 VVVQNPNF-LGALED---LGPFAEAAHGA-GALFVAVADPL--SLGVLK--P----PGAYGADIAVGD-GQSLGLPMGFG 265 (437)
T ss_dssp EEEESSCT-TSBCCC---HHHHHHHHHHT-TCEEEEECCTT--GGGTBC--C----HHHHTCSEEEEE-CTTTTCCCGGG
T ss_pred EEEccccc-cccccc---hHHHHHHhhhc-cceEEeeechh--hhhccc--c----ccccccceEeec-cceeccccCCC
Confidence 99999966 788855 89999999999 88887663321 111111 1 122344577777 66543 34
Q ss_pred cceeeEEEcCHHHHHHH----------------------------HHHhhcccCCCchHH--HHHHHHHHhcCCCChHHH
Q 014172 308 GWRLGYIAGPKHFVAAC----------------------------NKIQSQFTSGASSIS--QKAGVAALGLGYAGGEVV 357 (429)
Q Consensus 308 G~R~G~v~~~~~~~~~l----------------------------~~~~~~~~~~~~~~~--q~aa~~~l~~~~~~~~~~ 357 (429)
|.-.|++.+.+++.+.+ ++.+...+.|.+... ..+...+... +.+.+
T Consensus 266 GP~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~l---G~~GL 342 (437)
T d1wyua1 266 GPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAAL---GPEGL 342 (437)
T ss_dssp CSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHH---HHHHH
T ss_pred cCccccccccchhhccccccccccccccCCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhc---CcccH
Confidence 55678888877665432 222223333443333 3333333333 46789
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCceeecCCceEEE--EEecCCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 358 SKMVKAFRERRDFLVKSFGELEGVKMSEPQGAFYL--FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 358 ~~~~~~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
++..+....+..++.+.|.+++|++...+ +.+|- .++++ .+..+++++|+++ |+
T Consensus 343 ~~ia~~a~~~A~yl~~~L~~~~g~~~~~~-~~~f~ef~v~~~-------------~~~~~i~k~L~d~-G~ 398 (437)
T d1wyua1 343 REVALKSVEMAHKLHALLLEVPGVRPFTP-KPFFNEFALALP-------------KDPEAVRRALAER-GF 398 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCEECSC-SSBCSEEEEECS-------------SCHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeccCC-CCeeeEEEEECC-------------CCHHHHHHHHHhC-CC
Confidence 99999999999999999999889886544 33432 23443 2688999999887 65
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=7e-10 Score=104.87 Aligned_cols=296 Identities=10% Similarity=0.019 Sum_probs=161.3
Q ss_pred eEEcCCCCCCCCChHHHHHHHHHHHHcCCC-C-----CCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHHH
Q 014172 97 VIRLAAGEPDFDTPVLIAEAGINAIREGFT-R-----YTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSIL 169 (429)
Q Consensus 97 ~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~-~-----Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~ 169 (429)
+.||+.|- ...|++|++++.+.+.+... . .+. +....++.+.+.+.+++.++.+ ++..|++++|++++..
T Consensus 2 ~~nF~pGP--~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~-~~~~v~~~~gs~t~~~ 78 (360)
T d1bjna_ 2 IFNFSSGP--AMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVP-SNYKVLFCHGGGRGQF 78 (360)
T ss_dssp CEECCSSS--CCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHHH
T ss_pred eEEeCCCC--cCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEECCchHHHH
Confidence 45665543 34589999999987642110 0 010 1112345556666666666642 3347888888766665
Q ss_pred HHHH-HhcCCCCEEEEcCCCCCCh--HHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCCC
Q 014172 170 QAVL-AVCSPGDEVIIPAPFWVSY--PEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVYP 246 (429)
Q Consensus 170 ~~l~-~l~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~~ 246 (429)
.+.. .+..+++.+++..-.+... ...++..|..++.+...... .++.+.+++.+..+++++++++.+|-||+..+
T Consensus 79 ~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~ 156 (360)
T d1bjna_ 79 AAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD--GLRAVKPMREWQLSDNAAYMHYCPNETIDGIA 156 (360)
T ss_dssp HHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEET--TEEEECCGGGCCCCSSCSCEEECSEETTTTEE
T ss_pred hhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCC--CcchhhhhhhhccCCceeEEEecccccccCcc
Confidence 5544 4566778888776655442 34555667666666544322 35677777778888888888888999998887
Q ss_pred HHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEcCHHHH-----
Q 014172 247 KNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAGPKHFV----- 321 (429)
Q Consensus 247 ~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~~~~~~----- 321 (429)
. +++. ++.+ +++++.|.+.+.. ...... ++-.+.+.|.+|.++.++ ..|+++..+...
T Consensus 157 ~---~~i~--~~~~-~~~v~vDa~~~~~----~~~vd~------~~~dv~~~ss~k~~~~~~-~~~~~~~~~~~~~~~~~ 219 (360)
T d1bjna_ 157 I---DETP--DFGA-DVVVAADFSSTIL----SRPIDV------SRYGVIYAGAQKNIGPAG-LTIVIVREDLLGKANIA 219 (360)
T ss_dssp C---CCCC--CCCT-TCCEEEECTTTTT----SSCCCG------GGCSEEEEETTTTTSSTT-CEEEEEEGGGCSCCCTT
T ss_pred c---ccee--cccc-cceeeeeeecccc----ceeeee------ccceeEEEEcccccccCC-CceeEeeehhhhhcccc
Confidence 3 3333 3556 8899999887752 111122 233478889999998554 344444332211
Q ss_pred -------HHHHHHhhcccCCCchHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceeecC---CceEE
Q 014172 322 -------AACNKIQSQFTSGASSISQKAGVAALGLGYAGGEVVSKMVKAFRERRDFLVKSFGELEGVKMSEP---QGAFY 391 (429)
Q Consensus 322 -------~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~l~g~~~~~p---~~~~~ 391 (429)
....................+....+... .........+++++....+...+....+..+..+ .....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v 297 (360)
T d1bjna_ 220 CPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLK--ANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMN 297 (360)
T ss_dssp SCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSE
T ss_pred CCcchhhHHHHhhhhhccccccchHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceE
Confidence 11111112222222222222222222110 1223444555555555655555555423222211 12223
Q ss_pred EEEecCCccCCcccCCCCCCChHHHHHHHHHhCCeec
Q 014172 392 LFIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQVLL 428 (429)
Q Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV~v 428 (429)
+.+.+|+. .+..++...|. +.||.+
T Consensus 298 ~~f~~~~~-----------~~~~~~~~~l~-~~Gi~~ 322 (360)
T d1bjna_ 298 VPFQLADS-----------ALDKLFLEESF-AAGLHA 322 (360)
T ss_dssp EEEEESSG-----------GGHHHHHHHHH-HTTEEC
T ss_pred EEEEcCCc-----------ccHHHHHHHHH-HCCCEe
Confidence 55677653 25667777665 558875
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=98.83 E-value=1.8e-08 Score=95.16 Aligned_cols=197 Identities=11% Similarity=0.010 Sum_probs=114.9
Q ss_pred CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCC------CCC-CCCCHHHHHHHHHHHHhhcCCCCCCCcEEEecChHHHH
Q 014172 96 SVIRLAAGEPDFDTPVLIAEAGINAIREGFTR------YTP-NAGTLELRSAICHKLKEENGLSYTPDQILVSNGAKQSI 168 (429)
Q Consensus 96 ~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~------Y~~-~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al 168 (429)
.+.+|+.|-. +.|++|++++.+.+.+-... .+. +.-..++.+.+.+.+.+.++.+ ++..|++++|++++.
T Consensus 3 ~~~nF~pGP~--~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~-~~~~i~~~~gt~~~~ 79 (360)
T d1w23a_ 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDYQILFLQGGASLQ 79 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTEEEEEESSHHHHH
T ss_pred ceeEeCCCCc--CCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcHHHH
Confidence 3566766543 35799999999865321000 000 0011334444555555556642 234688888887777
Q ss_pred HHHHHH-hcCCCCEEEEcCCCCCC--hHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcccCCcEEEEcCCCCCccCCC
Q 014172 169 LQAVLA-VCSPGDEVIIPAPFWVS--YPEMARIADATPVILPTRISENFLLDPKVLESKLTEKSRLLILCSPSNPTGSVY 245 (429)
Q Consensus 169 ~~~l~~-l~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~~~~~i~l~~p~NPtG~~~ 245 (429)
..+... +..+++.|++....+.. +...++..+...+......... ..++.++..... .... +-.|-||.+.
T Consensus 80 ~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~---~~~~~tg~~~ 153 (360)
T d1w23a_ 80 FTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSY--QSIPDFSEFQLN-ENDA---YLHITSNNTI 153 (360)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTS--CSCCCGGGCCCC-TTEE---EEEEESEETT
T ss_pred HHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccc--cchhhhhhcccc-cccc---eeEecCCccc
Confidence 655444 45677888777654333 3455666676666665432222 344444444332 2222 2346689999
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcccccceeeEEEc
Q 014172 246 PKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFAMTGWRLGYIAG 316 (429)
Q Consensus 246 ~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~v~~ 316 (429)
+ +++|.++|+++ |+++|+|.+.+. +..+..+..+ + +.+.+++|.++++| ..|+++.
T Consensus 154 ~---~~~i~~~~~~~-g~l~ivDavqs~----g~~~id~~~~----~--vd~~~~~~~k~~~~-~~~~~~~ 209 (360)
T d1w23a_ 154 Y---GTQYQNFPEIN-HAPLIADMSSDI----LSRPLKVNQF----G--MIYAGAQKNLGPSG-VTVVIVK 209 (360)
T ss_dssp T---TEECSSCCCCC-SSCEEEECTTTT----TSSCCCGGGC----S--EEEEETTTTTSCTT-CEEEEEE
T ss_pred c---ceeeeeccccc-eeeEEeeccccc----cccccccccc----c--ceEEeeccccccCC-cceeeEe
Confidence 9 78899999999 999999999886 3333333332 2 56667888876444 3455543
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=98.75 E-value=6.1e-07 Score=87.28 Aligned_cols=310 Identities=16% Similarity=0.110 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhcCC----CeEEcCCCCCCCCChHHHHHHHHHHHHcCCCCCCC---CCCCHHHHHHHHHHHHhhcCCCCC
Q 014172 82 AITDQATALAQAGV----SVIRLAAGEPDFDTPVLIAEAGINAIREGFTRYTP---NAGTLELRSAICHKLKEENGLSYT 154 (429)
Q Consensus 82 ~~~~~~~~~~~~g~----~~i~L~~g~~~~~~p~~v~~a~~~~~~~~~~~Y~~---~~G~~~lr~~ia~~l~~~~g~~~~ 154 (429)
++.+...++..++. ..+-++.+..- .+|.+.+.+.+.+ ..++-|.| ++|..+..-.....+.+..|.++
T Consensus 48 El~r~~~~la~kN~~~~~~~~~lG~~~~h--y~P~v~~~~~~~~-TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdv- 123 (471)
T d1wyub1 48 TLVRHYTGLSRRQVGVDTTFYPLGSCTMK--YNPKLHEEAARLF-ADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA- 123 (471)
T ss_dssp HHHHHHHHHHTTCCCTTTSCCCBTTTCCC--CCCHHHHHHHHTT-SSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE-
T ss_pred HHHHHHHHHHhCCCCccccccCCccccCc--cCcchhhhHHHHH-hccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence 44555555555442 23444444322 2345555554422 23455555 45655544444455555556432
Q ss_pred CCcEEEecChHHHHHHHHHHh---cCCC----CEEEEcCCCCC-ChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhcc
Q 014172 155 PDQILVSNGAKQSILQAVLAV---CSPG----DEVIIPAPFWV-SYPEMARIADATPVILPTRISENFLLDPKVLESKLT 226 (429)
Q Consensus 155 ~~~i~~t~G~~~al~~~l~~l---~~~g----d~Vlv~~p~y~-~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~ 226 (429)
-|.-.-.|++..-..++++. .+.| ..+++..+.+. .+.......+.+++.++... ....+.+.+.....
T Consensus 124 -aNaS~yDGatA~aeA~~ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 200 (471)
T d1wyub1 124 -ITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELG 200 (471)
T ss_dssp -EECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCS
T ss_pred -cccccchHHHHHHHHHHHHHHHhhhcccccccccccCCcccccceeeeeecccceeecccccc--cccccchhhhhhhh
Confidence 34445567776555444443 1222 23444455444 45566667788888888653 34579999999888
Q ss_pred cCCcEEEEcCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEccCCcccccCCCCCCccccCCCCCCceEEEeccChhcc-
Q 014172 227 EKSRLLILCSPSNPTGSVYPKNLLDEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWERTLTVNGFSKAFA- 305 (429)
Q Consensus 227 ~~~~~i~l~~p~NPtG~~~~~~~l~~I~~~a~~~~~i~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~- 305 (429)
+++.++++.+|++..+..-. .+++.++++++ +..+++|-+-.....+-..++ . ..-.+++..-++.||
T Consensus 201 ~~~a~v~v~~p~~~g~~e~~---~~~~~~~~h~~-g~~~~~~~~~~~~~~~l~~p~---~----~g~div~vg~~q~~G~ 269 (471)
T d1wyub1 201 PHVAALMLTNPNTLGLFERR---ILEISRLCKEA-GVQLYYDGANLNAIMGWARPG---D----MGFDVVHLNLHKTFTV 269 (471)
T ss_dssp TTEEEEEECSSCTTSCCCTT---HHHHHHHHHHH-TCEEEEEGGGGGGTTTTCCHH---H----HTCSEEECCTTTTTCC
T ss_pred ccccceeeccCCCcccccch---hhhhHHHHHhc-cccccccccchhhhhhccccC---c----cccccccccccccccc
Confidence 88889999999886544434 77888888888 766666644322211100010 1 122244445555543
Q ss_pred ---cccceeeEEEcCHHHHHHHHH------------------HhhcccCCCch--HHHHHHHHHHhcCCCChHHHHHHHH
Q 014172 306 ---MTGWRLGYIAGPKHFVAACNK------------------IQSQFTSGASS--ISQKAGVAALGLGYAGGEVVSKMVK 362 (429)
Q Consensus 306 ---~~G~R~G~v~~~~~~~~~l~~------------------~~~~~~~~~~~--~~q~aa~~~l~~~~~~~~~~~~~~~ 362 (429)
..|.-+|++.+.+++++.+-. ..+....|.+. .+..++....-. +.+.++++.+
T Consensus 270 P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnqaL~al~A~vYlsll---G~~GL~elA~ 346 (471)
T d1wyub1 270 PHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTL---GLEGLKKAAA 346 (471)
T ss_dssp CCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred ccccccccccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhhHHHHHHHHHHHHHh---CchhHHHHHH
Confidence 346668899888887665410 00111223332 222232222223 5788999999
Q ss_pred HHHHHHHHHHHHhccCCCceeecCCceEEE--EEecCCccCCcccCCCCCCChHHHHHHHHHhCCe
Q 014172 363 AFRERRDFLVKSFGELEGVKMSEPQGAFYL--FIDFSTYYGSEAEGFGKIENSESLCRYLLDKAQV 426 (429)
Q Consensus 363 ~~~~~r~~l~~~L~~l~g~~~~~p~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~Ll~~~gV 426 (429)
....+..++.++|+. +|+++. ..+.||- .++++.. .+..+++++|+++ |+
T Consensus 347 ~~~~~A~Yla~~L~~-~G~~~~-~~~~ff~EFvv~~~~~-----------~~~~~i~k~L~~~-G~ 398 (471)
T d1wyub1 347 LAVLNARYLKELLKE-KGYRVP-YDGPSMHEFVAQPPEG-----------FRALDLAKGLLEL-GF 398 (471)
T ss_dssp HHHHHHHHHHHHHHH-TTCBCS-SCSSCCSCEEEBCSTT-----------CCHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHhh-cCceec-cCcceeeEEeecCCCC-----------CCHHHHHHHHHHc-CC
Confidence 999999999999976 588874 3444432 2444432 3578899999987 54
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.93 E-value=2.4 Score=35.63 Aligned_cols=96 Identities=15% Similarity=0.152 Sum_probs=58.2
Q ss_pred CCCcEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCCChHHHHHHcCCEEEEecCCCCCCCCCCHHHHHhhccc------
Q 014172 154 TPDQILVSNGAKQSILQAVLAVCSPGDEVIIPAPFWVSYPEMARIADATPVILPTRISENFLLDPKVLESKLTE------ 227 (429)
Q Consensus 154 ~~~~i~~t~G~~~al~~~l~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~l~~------ 227 (429)
....+++|.|++..-..+...|.+.|..|++..-.-.......+..+.+.+.+++. |.+++++.++.
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~-------~~~~v~~~~~~~~~~~g 76 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVA-------DPASVERGFAEALAHLG 76 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTT-------CHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecC-------CHHHHHHHHHHHHHhcC
Confidence 44566777776665566677788899888877644334455666667776665542 56666655532
Q ss_pred CCcEEEEcCCCCCcc--CCCCHHHHHHHHHH
Q 014172 228 KSRLLILCSPSNPTG--SVYPKNLLDEIARI 256 (429)
Q Consensus 228 ~~~~i~l~~p~NPtG--~~~~~~~l~~I~~~ 256 (429)
+...++-+....+.+ .-++.++|+++.++
T Consensus 77 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~v 107 (242)
T d1ulsa_ 77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRV 107 (242)
T ss_dssp SCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CceEEEECCcccccCchhhCcchhhhccccc
Confidence 455444333223223 23677888888775
|