Citrus Sinensis ID: 014181


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MGACGSKFLSKKKLKSKRISKRRVSFNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDASTLRVASPRDSFNQKDQNGDAWNGQLPCVASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
cccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccEEEEEEEccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHcccHHHHHHccccccccHHHHHHHcEEEEEccccccccccccccccccccccccEEcccccccccccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccEEEEEEEccccccccccccc
ccccccccccccccccccccccEcccccccccccccccccccccccHHccccHHHHHHcccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccHHHHEccccccccccccccccccccccccccccEEEEccccccccccccccccccHcHEEEEEEcccccHHHHHcccccccccccccccEEEEEEEEccccccHHcccccccccEEEEEEEEccccHHccccccccHHHHHHHccccHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccEEEcccccEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHEEHHHEHEEcccHHHccHHEEEEEEEEccEccccccccc
mgacgskflskkklkskRISKRRVSFnkldkidecgkrdarchsnsstllaskefawfdccsaldqseidddfysvhddastlrvasprdsfnqkdqngdawngqlpcvasamssddkarvssprapgakrKLLSRLSFKfkeghnnqnsfppkvllqrpkagsslsfcplekkmsnswspiepstfrvrgqnylrdkkkdfapnfaaycpfaadVFLSQRKIDHiarfvdlpvidsseelpsILVVnlqiplypaaifqgendgegMNLVLYFKLSesyskdlpvHFQEHVNRIINDevervkgfpldtiNSFRERLKILSRLvngedlhlSTTEKKILNtynekpvlsrpqhefylgenyfeidldvhrfsylsrkTFAAFQDRFKLCkldfgltiqenktenlpenmlccirlneidysnyrqlgv
mgacgskflskkklkskriskrrvsfnkldkidecgkrdarchsnsstllaskEFAWFDCCSALDQSEIDDDFYSVHDDASTlrvasprdsfnqkdqngdawnGQLPCVASAMssddkarvssprapgakrkLLSRLSFKFkeghnnqnsfppkvllqrpKAGSSLSFCPLEKkmsnswspiepstfRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIindevervkgfpldtiNSFRERLKILsrlvngedlhlsttekkilntynekpvlsrPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIqenktenlpeNMLCCIRlneidysnyrqlgv
MGACGskflskkklkskriskrrvsfNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDASTLRVASPRDSFNQKDQNGDAWNGQLPCVASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
**********************************************STLLASKEFAWFDCCSALDQSEIDDDFYSVH*************************************************************************************************************FRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNY*****
****************************************************KEFAWFDCCSALDQSEIDDDFYSVHDDASTLRVA*************DA*NG****************************************************LQRPKAGSSL************WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARF*********EELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSK***VH**EHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
*******************SKRRVSFNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDASTLRVASPRDSFNQKDQNGDAWNGQLPCVAS******************KRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
********************************************************W*DCC*ALDQSEIDDDFYSVHDD******************N***WNGQL*C**S********************KLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNY*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGACGSKFLSKKKLKSKRISKRRVSFNKLDKIDECGKRDARCHSNSSTLLASKEFAWFDCCSALDQSEIDDDFYSVHDDASTLRVASPRDSFNQKDQNGDAWNGQLPCVASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSNYRQLGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
255552782483 conserved hypothetical protein [Ricinus 0.990 0.879 0.571 1e-141
296087747479 unnamed protein product [Vitis vinifera] 0.990 0.887 0.577 1e-139
224140901478 predicted protein [Populus trichocarpa] 0.927 0.832 0.580 1e-136
225452618 532 PREDICTED: uncharacterized protein LOC10 0.776 0.625 0.714 1e-135
449461897439 PREDICTED: uncharacterized protein LOC10 0.904 0.883 0.610 1e-133
255638564440 unknown [Glycine max] 0.965 0.940 0.562 1e-132
356572108440 PREDICTED: uncharacterized protein LOC10 0.967 0.943 0.555 1e-132
356550488436 PREDICTED: uncharacterized protein LOC10 0.897 0.883 0.607 1e-132
356497824512 PREDICTED: uncharacterized protein LOC10 0.769 0.644 0.658 1e-130
255558294512 conserved hypothetical protein [Ricinus 0.755 0.632 0.688 1e-128
>gi|255552782|ref|XP_002517434.1| conserved hypothetical protein [Ricinus communis] gi|223543445|gb|EEF44976.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 277/485 (57%), Positives = 337/485 (69%), Gaps = 60/485 (12%)

Query: 1   MGACGSK-----FLSKKKLKS---------KRISKRRVSFNKLDKIDECGKRDARCHSNS 46
           MG C S+      LS KK K+         +RI KRRVS +   + D  G+ D R  SN 
Sbjct: 1   MGGCASRPKGCIGLSSKKKKNGTNKPRIRRRRIIKRRVSSHNFGRPDLSGQTD-RSFSNP 59

Query: 47  STLLASKEFAWFDCCSALDQSEIDDDFYSVHDDA-------STLRVASPRDSFNQKD--- 96
           +   +    AW D  S L +SEIDD+FYSVH+D        S L ++SPRD FNQKD   
Sbjct: 60  AFQGSIDAAAWSDAISVL-ESEIDDEFYSVHEDGFSVIGTESVLSISSPRD-FNQKDYYE 117

Query: 97  ---------------QNGDAWNGQ-----------------LPCVASAMSSDDKARVSSP 124
                            GD    Q                 LPC+AS + S +K R  SP
Sbjct: 118 NNTRNEVVKAQVSGNGGGDVNVMQMQQQVEENNCGLLPNICLPCLASTVPSIEKKRSLSP 177

Query: 125 RA-PGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKKMSNSWSPIE 183
              P ++RK   RLSFK++EGH+    F PK LLQRP AGSSL  CPLEKKM + WSPIE
Sbjct: 178 SGTPSSRRKPSLRLSFKWREGHSTPTFFSPKALLQRPIAGSSLPCCPLEKKMPDCWSPIE 237

Query: 184 PSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSEELPS 243
           PSTF+VRGQNY RDKKKD APN AA+ PF AD+FLS RKI HIAR+V+LP + +++E+PS
Sbjct: 238 PSTFKVRGQNYFRDKKKDRAPNCAAFYPFGADLFLSPRKIHHIARYVELPTVSATDEVPS 297

Query: 244 ILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERV 303
           +LVVNLQIPLYPA IFQ ENDGEGM+LV+YFKLSE+YSK+LP HF++++NR+INDEVERV
Sbjct: 298 VLVVNLQIPLYPATIFQSENDGEGMSLVMYFKLSENYSKELPSHFRDNINRLINDEVERV 357

Query: 304 KGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYLGENYF 363
           +GFP+DTI  FRERLKIL RL N ++L L + EKK+LN YNEKPVLSRPQHEFYLGE+YF
Sbjct: 358 RGFPVDTIAPFRERLKILGRLANADELQLGSAEKKLLNAYNEKPVLSRPQHEFYLGESYF 417

Query: 364 EIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCIRLNEIDYSN 423
           EIDLD+H+FSY+SRK F AFQDR KLC LDFGLTIQ +K E+LPE+MLCC+RLNE+DY+ 
Sbjct: 418 EIDLDMHKFSYISRKGFEAFQDRLKLCVLDFGLTIQGHKAEDLPEHMLCCMRLNELDYAK 477

Query: 424 YRQLG 428
           ++QLG
Sbjct: 478 HQQLG 482




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087747|emb|CBI35003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224140901|ref|XP_002323816.1| predicted protein [Populus trichocarpa] gi|118482376|gb|ABK93111.1| unknown [Populus trichocarpa] gi|222866818|gb|EEF03949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225452618|ref|XP_002276119.1| PREDICTED: uncharacterized protein LOC100266380 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461897|ref|XP_004148678.1| PREDICTED: uncharacterized protein LOC101209394 [Cucumis sativus] gi|449519689|ref|XP_004166867.1| PREDICTED: uncharacterized protein LOC101231709 [Cucumis sativus] Back     alignment and taxonomy information
>gi|255638564|gb|ACU19589.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356572108|ref|XP_003554212.1| PREDICTED: uncharacterized protein LOC100808949 [Glycine max] Back     alignment and taxonomy information
>gi|356550488|ref|XP_003543619.1| PREDICTED: uncharacterized protein LOC100797844 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356497824|ref|XP_003517757.1| PREDICTED: uncharacterized protein LOC100787325 [Glycine max] Back     alignment and taxonomy information
>gi|255558294|ref|XP_002520174.1| conserved hypothetical protein [Ricinus communis] gi|223540666|gb|EEF42229.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
TAIR|locus:2012848485 AT1G10410 [Arabidopsis thalian 0.750 0.663 0.631 9.7e-118
TAIR|locus:2202877492 CW14 "AT1G59650" [Arabidopsis 0.804 0.701 0.598 7.8e-110
TAIR|locus:2093868513 AT3G29180 "AT3G29180" [Arabido 0.724 0.606 0.528 7.1e-90
TAIR|locus:2175648511 AT5G39430 "AT5G39430" [Arabido 0.729 0.612 0.493 1.2e-83
TAIR|locus:2014819504 AT1G13970 "AT1G13970" [Arabido 0.631 0.537 0.519 2e-79
TAIR|locus:2102465733 AT3G54800 [Arabidopsis thalian 0.188 0.110 0.310 4.4e-05
TAIR|locus:2198866313 AT1G06050 "AT1G06050" [Arabido 0.221 0.303 0.271 0.00065
TAIR|locus:2012848 AT1G10410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1097 (391.2 bits), Expect = 9.7e-118, Sum P(2) = 9.7e-118
 Identities = 204/323 (63%), Positives = 256/323 (79%)

Query:   106 LPCV-ASAMSSDDKARVSSPRAPGAKRKLLSRLSFKFKEGHNNQNSFPPKVLLQRPKAGS 164
             LPC+  + + S DK R  S   P +++K   RLS+K++EGH +   F  K+ L+RP AGS
Sbjct:   158 LPCLNTTTVPSIDKRRSLSSSPPSSRKKSSLRLSYKWREGHASGALFLSKMQLKRPIAGS 217

Query:   165 SLSFCPLEKKMSNSWSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKID 224
              + FCP++KKM + WS I+P++FRVRG+ YLR+KKK+FAP+ AAY PF  DVFLS+ KI 
Sbjct:   218 QVPFCPIDKKMLDCWSTIDPNSFRVRGKTYLREKKKEFAPSHAAYNPFGVDVFLSEHKIH 277

Query:   225 HIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDL 284
             H+A++V LPV  +S +LPSILVVN+QIPLYP AIFQGE+DGEGMN+VLYFKLS++YSK+L
Sbjct:   278 HVAQYVKLPVTTTSTKLPSILVVNVQIPLYPTAIFQGESDGEGMNIVLYFKLSDNYSKEL 337

Query:   285 PVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYN 344
             P+HFQE + R+I+DEVE+VKGFPLDT   FRERLKIL R+ N +DLHLS  EKK++  YN
Sbjct:   338 PLHFQESIRRLIDDEVEKVKGFPLDTTAPFRERLKILGRVANVDDLHLSGPEKKLMQAYN 397

Query:   345 EKPVLSRPQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTE 404
             EKPVLSRPQHEFYLG+NYFEID+D+HRF Y+SRK F  F DR K+C LD GLTIQ NK E
Sbjct:   398 EKPVLSRPQHEFYLGDNYFEIDIDMHRFGYISRKGFETFIDRLKICVLDVGLTIQGNKPE 457

Query:   405 NLPENMLCCIRLNEIDYSNYRQL 427
              LPE +LCC+RLN ID+ NY QL
Sbjct:   458 ELPEQILCCVRLNGIDFMNYHQL 480


GO:0005634 "nucleus" evidence=ISM
GO:0006865 "amino acid transport" evidence=RCA
TAIR|locus:2202877 CW14 "AT1G59650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093868 AT3G29180 "AT3G29180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175648 AT5G39430 "AT5G39430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014819 AT1G13970 "AT1G13970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102465 AT3G54800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198866 AT1G06050 "AT1G06050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
pfam07059215 pfam07059, DUF1336, Protein of unknown function (D 2e-75
>gnl|CDD|219281 pfam07059, DUF1336, Protein of unknown function (DUF1336) Back     alignment and domain information
 Score =  234 bits (598), Expect = 2e-75
 Identities = 98/246 (39%), Positives = 128/246 (52%), Gaps = 35/246 (14%)

Query: 179 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVID-S 237
           WS  +PSTF+VRG+ YL+DKKK  A N   Y     D F S +KIDHIA   DL V   +
Sbjct: 1   WSEPDPSTFKVRGKTYLKDKKKIPAGNPL-YTLIGVDWFKSDKKIDHIANHPDLRVQKAA 59

Query: 238 SEELPSILVVNLQIPLYPAAIFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIIN 297
            + LP +L+VN+Q+P            GEG +LVLYF L E   K+L   F   + R ++
Sbjct: 60  KKGLPFVLIVNIQVP-----------GGEGYSLVLYFALEEPVEKELSPAFGSLLRRFVD 108

Query: 298 -DEVERVKGFPLDTINSFRERLKILSRLVNGEDLHLSTTEKKILNTYNEKPVL--SRPQH 354
            DE      F         ERLKI+ R+V G     S   ++++  YNEKP L    PQ 
Sbjct: 109 GDE----DAFR-------NERLKIIPRIVKG-----SWIVRQLV--YNEKPCLVGKAPQC 150

Query: 355 EFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCCI 414
            +Y G NY EID+D+   S ++RK    F        LD   TIQ    E LPE +L  +
Sbjct: 151 NYYRGPNYLEIDVDIGS-SSIARKGLELFLGYLTNLVLDLAFTIQGQTEEELPERLLGAV 209

Query: 415 RLNEID 420
           RLN+ID
Sbjct: 210 RLNKID 215


This family represents the C-terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function. Length = 215

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
PF07059227 DUF1336: Protein of unknown function (DUF1336); In 100.0
PLN00188719 enhanced disease resistance protein (EDR2); Provis 100.0
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function Back     alignment and domain information
Probab=100.00  E-value=2e-76  Score=565.54  Aligned_cols=222  Identities=43%  Similarity=0.745  Sum_probs=209.3

Q ss_pred             cccCCCCCeEEcCCCccCCCccccCCCCCccceeeeeEeeeCcccchhhccCCCcccccCC-CCCeEEEEEEEcCCCccc
Q 014181          179 WSPIEPSTFRVRGQNYLRDKKKDFAPNFAAYCPFAADVFLSQRKIDHIARFVDLPVIDSSE-ELPSILVVNLQIPLYPAA  257 (429)
Q Consensus       179 Ws~p~~s~FkVRG~~Yl~DKkKvpA~~~~l~~lvgvDlF~s~~kidhIa~~~~lp~~~~~~-~~P~vfIVNiqlP~~p~~  257 (429)
                      ||+|++++|+|||+|||+||||+||+++ +|+++|||||+|++|++|||+|++++.+.... +.|++||||||||+||++
T Consensus         1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~-l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~   79 (227)
T PF07059_consen    1 WSEPDASTFKVRGPNYLKDKKKVPAGPP-LFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS   79 (227)
T ss_pred             CCCCCCCEEEEeCCCcccCCCCCcCCCc-ceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence            9999999999999999999999999985 99999999999999999999999999877654 589999999999999999


Q ss_pred             ccCCCCCCCCeEEEEEEeeCccccCCCCcchHHHhhhhhhhhhhhhcCCCCCChhhhh-hhcceeeeecCCCcccchhhH
Q 014181          258 IFQGENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFR-ERLKILSRLVNGEDLHLSTTE  336 (429)
Q Consensus       258 ~F~~~~DGeg~slVlYF~~~e~~~~~l~~~f~~ll~rf~~deve~vkgf~~d~~d~fR-~RfKLIp~Vvng~wi~l~~~~  336 (429)
                      +| ++.||+|||+|+||++++++.++.+++|.++++||++++         +.+|+|| +||||||+|+||+|+      
T Consensus        80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------  143 (227)
T PF07059_consen   80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------  143 (227)
T ss_pred             cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence            99 999999999999999999998888889999999999743         1128899 899999999999999      


Q ss_pred             HHHhhhc-CCeeeeec--CceeeccCCCeEEEEEeccCchHHHHHHHHHhhhccceeEEeeeEeeecCCCCCCcccccce
Q 014181          337 KKILNTY-NEKPVLSR--PQHEFYLGENYFEIDLDVHRFSYLSRKTFAAFQDRFKLCKLDFGLTIQENKTENLPENMLCC  413 (429)
Q Consensus       337 r~l~~av-n~KPvLir--~~~~y~~G~nYlEiDvDI~sfS~iAr~~l~l~~g~~k~lvvD~GfvIEG~~eeELPE~lLG~  413 (429)
                        +++++ |+||||||  ++|+||+|+||||||||||+ |+|||+++++|++|+++|||||||||||+++|||||+||||
T Consensus       144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~  220 (227)
T PF07059_consen  144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC  220 (227)
T ss_pred             --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence              56666 99999998  69999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             EEecccc
Q 014181          414 IRLNEID  420 (429)
Q Consensus       414 vRl~~iD  420 (429)
                      +||+|||
T Consensus       221 ~Rl~~id  227 (227)
T PF07059_consen  221 VRLNHID  227 (227)
T ss_pred             EEeeecC
Confidence            9999998



>PLN00188 enhanced disease resistance protein (EDR2); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 67/474 (14%), Positives = 138/474 (29%), Gaps = 147/474 (31%)

Query: 1   MGACGSKFLSKKKLKSKRISKRRVSFN----KLDKIDECGKRDARCHSNSSTLLASKEFA 56
           +   G  +++     S ++ + ++ F      L            C+S  + L   ++  
Sbjct: 158 VLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNL----------KNCNSPETVLEMLQKL- 205

Query: 57  WFDCCSALDQSEIDDDFYSVHDDASTLRV------ASPRDSFNQKD-QNG-----DAWNG 104
                  +D      ++ S  D +S +++      A  R     K  +N      +  N 
Sbjct: 206 ----LYQIDP-----NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 105 Q------LPC----------VASAMSSDDKARVSS-----PRAPGAKRKLLSR-LSFKFK 142
           +      L C          V   +S+     +S         P   + LL + L  + +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 143 EGHNNQNSFPPKVLLQRPKAGSSLSFCPLEKK-MSNSWSPIEPSTFRVRGQNYLRDKKKD 201
           +        P +VL   P+    LS      +    +W            ++   DK   
Sbjct: 317 D-------LPREVLTTNPRR---LSIIAESIRDGLATWDNW---------KHVNCDKLTT 357

Query: 202 FAPNFAAYCPFAADVFLSQRK-IDHIARFVDLPVIDSSEELPSILVVNLQIPLYPAAIFQ 260
                        +  L+  +  ++   F  L V   S  +P+IL   L + ++   I  
Sbjct: 358 -----------IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL---LSL-IWFDVIK- 401

Query: 261 GENDGEGMNLVLYFKLSESYSKDLPVHFQEHVNRIINDEVERVKGFPLDTINSFRERLKI 320
             +    +N +  + L E   K+  +         I           +         L++
Sbjct: 402 -SDVMVVVNKLHKYSLVEKQPKESTIS--------IPS---------IY--------LEL 435

Query: 321 LSRLVNGEDLHLSTTEKKILNTYNEKPVLSRPQHEFYL--GENYFEIDLDVHRFSYLSRK 378
             +L N   LH     + I++ YN     +    +      + YF        +S++   
Sbjct: 436 KVKLENEYALH-----RSIVDHYNIP--KTFDSDDLIPPYLDQYF--------YSHIGHH 480

Query: 379 TFAAFQ----DRFKLCKLDFGLTIQENKTENLPENMLCCIRLNE--IDYSNYRQ 426
                       F++  LDF     E K  +          +         Y+ 
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKP 532


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00