Citrus Sinensis ID: 014204

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MYHHHFLHQHQHSWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQVQGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASSTSPQPLAISNGEASDELVDMVWSANSDDHQHQNTNTNNETSLGASGSRNSSNPESPKCPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHHVPMFALWNE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccEEEEEEccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEcccccccccEEcccccccHHHHHHHHcHHcEEEcccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccHccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEEEEcccccEEEEEEccccccccccccccEEEEccccHHHHHHHHHHHHHHHHcccccEEcccHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccEEccccHccccccEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHcccccEEccccccccHHHccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
myhhhflhqhqhswlrqtpfasssssaeksaaasdtnqgnncgfqplslamnptsaeqngpiittaitplqvqgvaadnrkrpmgkataakepvprksidsfgqrtsqyrgvtrhrwtgryeahlwdnscrkegqtrkgrqvylggydkedKAARAYDLAALKYWgatthinfplSTYEKELEEMKHMTRQEFVANLRrkssgfsrgasvyrgvtrhhqhgrwqarigrvagnkdlylgtfSTQEEAAEAYDIAAIKfrgtsavtnfdisrydvkricsssTLIASdlakrspkdsaplvledynscasstspqplaisngeaSDELVDMVWsansddhqhqntntnnetslgasgsrnssnpespkcpvgltsefgmsgaeynegyfsspgtkyencdddnggnhstnnrlVNLGLVhhvpmfalwne
Flexible Loop (DISEMBL)
MYHHHFLhqhqhswlrQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQVQGVAadnrkrpmgkataakepvprksidsfgqrtsqyrgvtrhrwtgryeahlwdnscrkegqtrkgrqvylGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVAnlrrkssgfsrgasvyrgvtrhhqhgrwqarigrvagNKDLYLGTFSTQEEAAEAYDIAAIkfrgtsavtnfdisrydvKRICSSStliasdlakrspkDSAPLVLEDYNSCASSTSPQPLAISNGEASDELVDMVWSANSDDHQHQNTNTNNETSLGASGSRNSSNPESPKCPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHHVPMFALWNE
Low Complexity Region (SEG)
MYhhhflhqhqhSWLRQTPFasssssaeksaaasDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQVQGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQeeaaeaYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASSTSPQPLAISNGEASDELVDMVWSANSddhqhqntntnnETSLGASGSRNSSNPESPKCPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHHVPMFALWNE
Disordered region (IsUnstruct)
*************************************************************IITTAITPLQV************************************YRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKEL**********FVA**********RGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIA****************************************************************************************************************************NRLVNLGLVHHVPMFALW**
Disordered Region (DISOPRED)
***HHFL********************************************************************************************************VTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLR**********SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYD**************************************************************************************************************************************************HVPMFALWN*
Disordered Region (DISEMBL)
*************************************QGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQVQG*********************RKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGV*********QARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNS********PLAISNGEASDELVDMVWSANSDDHQHQNTNTNNE******************CPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHHVPMFALWNE
Disordered Region (DISPRO)
*YHHHFLHQHQHSWL*****************************************************************************************RTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTL*************************************************************************************P**LTS***MSGAEYNEGYFSSPGTKYENC**********NNRLVNLGLVHHVPMFALWNE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYHHHFLHQHQHSWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQVQGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASSTSPQPLAISNGEASDELVDMVWSANSDDHQHQNTNTNNETSLGASGSRNSSNPESPKCPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHHVPMFALWNE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
Q1PFE1	415	AP2-like ethylene-respons	yes	no	0.659	0.681	0.676	1e-108
Q6PQQ3	558	AP2-like ethylene-respons	no	no	0.519	0.399	0.780	1e-103
Q8LSN2	579	AP2-like ethylene-respons	N/A	no	0.610	0.452	0.644	1e-101
Q5YGP8	574	AP2-like ethylene-respons	no	no	0.606	0.452	0.657	1e-100
Q8L3U3	579	AP2-like ethylene-respons	N/A	no	0.610	0.452	0.637	1e-99
Q6PQQ4	584	AP2-like ethylene-respons	no	no	0.484	0.356	0.812	5e-99
Q38914	555	AP2-like ethylene-respons	no	no	0.533	0.412	0.732	6e-99
Q5YGP7	568	AP2-like ethylene-respons	no	no	0.568	0.429	0.704	1e-98
Q6J9N8	498	AP2-like ethylene-respons	no	no	0.494	0.425	0.732	9e-85
Q52QU2	581	AP2-like ethylene-respons	no	no	0.489	0.361	0.733	3e-80

>sp|Q1PFE1|AIL1_ARATH AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana GN=AIL1 PE=2 SV=1

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/294 (67%), Positives = 226/294 (76%), Gaps = 11/294 (3%)

Query: 13  SWLRQ-TP-FASSSSSAEKSAAASDT-------NQGNNCGFQPLSLAMNPTSAEQNGPII 63
           SWL Q TP F  SS    + A  S+          G N     LSLA++  +      I 
Sbjct: 121 SWLEQGTPAFPLSSHYVTEEAGTSNNISHFSNEETGYNTNGSMLSLALSHGACSD--LIN 178

Query: 64  TTAITPLQVQGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEA 123
            + ++    + V  D +++ +      KE VPRKS+DS+GQRTSQYRGVTRHRWTGRYEA
Sbjct: 179 ESNVSARVEEPVKVDEKRKRLVVKPQVKESVPRKSVDSYGQRTSQYRGVTRHRWTGRYEA 238

Query: 124 HLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELE 183
           HLWDNSC+KEGQTR+GRQVYLGGYD+E+KAARAYDLAALKYWG TTH+NFPLS YEKE+E
Sbjct: 239 HLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAYDLAALKYWGPTTHLNFPLSNYEKEIE 298

Query: 184 EMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFST 243
           E+ +M RQEFVA LRR SSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFST
Sbjct: 299 ELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFST 358

Query: 244 QEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSA 297
           QEEAAEAYDIAAIKFRG +AVTNFDI+RYDVKRICSSST++ SD AK SP  S 
Sbjct: 359 QEEAAEAYDIAAIKFRGLNAVTNFDINRYDVKRICSSSTIVDSDQAKHSPTSSG 412

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6PQQ3|AIL5_ARATH AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana GN=AIL5 PE=2 SV=2

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 174/223 (78%), Positives = 195/223 (87%)

Query: 75  VAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEG 134
           V++ ++++P   A +   P P+K+++SFGQRTS YRGVTRHRWTGRYEAHLWDNSCR+EG
Sbjct: 170 VSSVHKQQPNPLAVSEASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREG 229

Query: 135 QTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFV 194
           Q+RKGRQVYLGGYDKEDKAARAYDLAALKYWG TT  NFP+S YE ELEEMKHMTRQEFV
Sbjct: 230 QSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFV 289

Query: 195 ANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIA 254
           A+LRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIA
Sbjct: 290 ASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIA 349

Query: 255 AIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSA 297
           AIKFRG +AVTNFDISRYDVK I S +  +   + K SP  +A
Sbjct: 350 AIKFRGLNAVTNFDISRYDVKSIASCNLPVGGLMPKPSPATAA 392

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LSN2|BBM2_BRANA AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/287 (64%), Positives = 214/287 (74%), Gaps = 25/287 (8%)

Query: 13  SWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQV 72
           +WLR  P  +              NQ N  G + LSL+MN +++  N      +   L  
Sbjct: 140 TWLRNQPVDNVD------------NQENGNGAKGLSLSMNSSTSCDNN---NYSSNNLVA 184

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
           QG   D+          + E  P+K+I+SFGQRTS YRGVTRHRWTGRYEAHLWDNSC++
Sbjct: 185 QGKTIDD----------SVEATPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKR 234

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQTRKGRQVYLGGYDKE+KAARAYDLAALKYWG TT  NFP+S YEKE+EEMKHMTRQE
Sbjct: 235 EGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEIEEMKHMTRQE 294

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           +VA+LRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQEEAAEAYD
Sbjct: 295 YVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYD 354

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPL 299
           IAAIKFRG +AVTNFD++RY+VK I  S +L     AKR  + + P+
Sbjct: 355 IAAIKFRGLTAVTNFDMNRYNVKAILESPSLPIGSAAKRLKEANRPV 401

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q5YGP8|PLET1_ARATH AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/280 (65%), Positives = 211/280 (75%), Gaps = 20/280 (7%)

Query: 23  SSSSAEKSAAASDTNQGNNCGF----------QPLSLAMNPTSAEQNGPIITTAITPLQV 72
           S  S +   AA D+N  NN  +          Q L+L+M  T+    G  +    +P + 
Sbjct: 95  SVQSNDVVVAACDSNTPNNSSYHELQESAHNLQSLTLSMGTTA----GNNVVDKASPSET 150

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
            G  A       G     +   PR+++D+FGQRTS YRGVTRHRWTGRYEAHLWDNSCR+
Sbjct: 151 TGDNASG-----GALAVVETATPRRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRR 205

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQ+RKGRQVYLGGYDKEDKAAR+YDLAALKYWG +T  NFP++ YEKE+EEMKHMTRQE
Sbjct: 206 EGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEEMKHMTRQE 265

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           FVA +RRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFST+EEAAEAYD
Sbjct: 266 FVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYD 325

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTL-IASDLAKR 291
           IAAIKFRG +AVTNF+I+RYDVK I  SSTL I    AKR
Sbjct: 326 IAAIKFRGLNAVTNFEINRYDVKAILESSTLPIGGGAAKR 365

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3U3|BBM1_BRANA AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1

 Score =  363 bits (933), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/287 (63%), Positives = 212/287 (73%), Gaps = 25/287 (8%)

Query: 13  SWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQV 72
           +WLR  P  +              NQ N    + LSL+MN +++  N       +     
Sbjct: 140 TWLRNQPVDNVD------------NQENGNAAKGLSLSMNSSTSCDNNNDSNNNVV---A 184

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
           QG   D+          + E  P+K+I+SFGQRTS YRGVTRHRWTGRYEAHLWDNSC++
Sbjct: 185 QGKTIDD----------SVEATPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKR 234

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQTRKGRQVYLGGYDKE+KAARAYDLAALKYWG TT  NFP+S YEKE+EEMKHMTRQE
Sbjct: 235 EGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEVEEMKHMTRQE 294

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           +VA+LRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQEEAAEAYD
Sbjct: 295 YVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYD 354

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPL 299
           IAAIKFRG +AVTNFD++RY+VK I  S +L     AKR  + + P+
Sbjct: 355 IAAIKFRGLTAVTNFDMNRYNVKAILESPSLPIGSAAKRLKEANRPV 401

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Brassica napus (taxid: 3708)

>sp|Q6PQQ4|BBM_ARATH AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2

 Score =  361 bits (927), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 169/208 (81%), Positives = 185/208 (88%)

Query: 92  EPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKED 151
           E  P+K+I+SFGQRTS YRGVTRHRWTGRYEAHLWDNSC++EGQTRKGRQVYLGGYDKE+
Sbjct: 194 ETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEE 253

Query: 152 KAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVY 211
           KAARAYDLAALKYWG TT  NFPLS YEKE+EEMKHMTRQE+VA+LRRKSSGFSRGAS+Y
Sbjct: 254 KAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIY 313

Query: 212 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISR 271
           RGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQEEAAEAYDIAAIKFRG SAVTNFD++R
Sbjct: 314 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNR 373

Query: 272 YDVKRICSSSTLIASDLAKRSPKDSAPL 299
           Y+VK I  S +L     AKR    + P+
Sbjct: 374 YNVKAILESPSLPIGSSAKRLKDVNNPV 401

Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38914|ANT_ARATH AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2

 Score =  361 bits (926), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 170/232 (73%), Positives = 198/232 (85%), Gaps = 3/232 (1%)

Query: 62  IITTAITPLQVQGVAADNRKRPMGKATAA--KEPVPRKSIDSFGQRTSQYRGVTRHRWTG 119
           ++ T++   +   +AA  +KR          K+ V RKSID+FGQRTSQYRGVTRHRWTG
Sbjct: 236 LVETSV-GFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTG 294

Query: 120 RYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYE 179
           RYEAHLWDNS +KEG +RKGRQVYLGGYD E+KAARAYDLAALKYWG +TH NF    Y+
Sbjct: 295 RYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFSAENYQ 354

Query: 180 KELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLG 239
           KE+E+MK+MTRQE+VA+LRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLG
Sbjct: 355 KEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLG 414

Query: 240 TFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKR 291
           TF TQEEAAEAYD+AAIKFRGT+AVTNFDI+RYDV RI SS+TL++ +LA+R
Sbjct: 415 TFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSGELARR 466

Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5YGP7|PLET2_ARATH AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1

 Score =  360 bits (923), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/250 (70%), Positives = 204/250 (81%), Gaps = 6/250 (2%)

Query: 44  FQPLSLAMNPTSAEQNGPIITTAITPLQVQGVAADNRKRPMGKATAA-KEPVPRKSIDSF 102
            Q L+L+M  T A     + T   +P +    +ADN       +  A  E  PR+++++F
Sbjct: 129 LQSLTLSMGSTGAAA-AEVATVKASPAET---SADNSSSTTNTSGGAIVEATPRRTLETF 184

Query: 103 GQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAAL 162
           GQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ+RKGRQVYLGGYDKE+KAARAYDLAAL
Sbjct: 185 GQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAAL 244

Query: 163 KYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGR 222
           KYWG +T  NFP++ YEKE+EEMK+MTRQEFVA++RRKSSGFSRGAS+YRGVTRHHQHGR
Sbjct: 245 KYWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGR 304

Query: 223 WQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSST 282
           WQARIGRVAGNKDLYLGTFST+EEAAEAYDIAAIKFRG +AVTNF+I+RYDVK I  S+T
Sbjct: 305 WQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESNT 364

Query: 283 L-IASDLAKR 291
           L I    AKR
Sbjct: 365 LPIGGGAAKR 374

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J9N8|AIL7_ARATH AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana GN=AIL7 PE=2 SV=2

 Score =  314 bits (804), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 156/213 (73%), Positives = 185/213 (86%), Gaps = 1/213 (0%)

Query: 79  NRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRK 138
           N+K+ + K   + +   +K +++ GQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ RK
Sbjct: 203 NKKKTVSKKETSDDS-KKKIVETLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARK 261

Query: 139 GRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLR 198
           GRQVYLGGYDKED+AARAYDLAALKYWG+T   NFP+S+Y KELEEM HMT+QEF+A+LR
Sbjct: 262 GRQVYLGGYDKEDRAARAYDLAALKYWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLR 321

Query: 199 RKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKF 258
           RKSSGFSRGAS+YRGVTRHHQ GRWQARIGRVAGNKDLYLGTF+T+EEAAEAYDIAAIKF
Sbjct: 322 RKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKF 381

Query: 259 RGTSAVTNFDISRYDVKRICSSSTLIASDLAKR 291
           RG +AVTNF+++RYD++ + +SS  +    AKR
Sbjct: 382 RGINAVTNFEMNRYDIEAVMNSSLPVGGAAAKR 414

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QU2|AIL6_ARATH AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1

 Score =  299 bits (765), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 157/214 (73%), Positives = 177/214 (82%), Gaps = 4/214 (1%)

Query: 78  DNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTR 137
           D+ K     A    +   +K  D+FGQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ R
Sbjct: 238 DSEKEKAVVAVETSDCSNKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQAR 297

Query: 138 KGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANL 197
           KGRQ   GGYDKEDKAARAYDLAALKYW AT   NFP++ Y KE+EEMKHMT+QEF+A+L
Sbjct: 298 KGRQ---GGYDKEDKAARAYDLAALKYWNATATTNFPITNYSKEVEEMKHMTKQEFIASL 354

Query: 198 RRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIK 257
           RRKSSGFSRGAS+YRGVTRHHQ GRWQARIGRVAGNKDLYLGTF+T+EEAAEAYDIAAIK
Sbjct: 355 RRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIK 414

Query: 258 FRGTSAVTNFDISRYDVKRICSSSTLIASDLAKR 291
           FRG +AVTNF+++RYDV+ I  S+  I    AKR
Sbjct: 415 FRGINAVTNFEMNRYDVEAIMKSALPIGG-AAKR 447

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
359482487	561	PREDICTED: LOW QUALITY PROTEIN: AP2-like	0.932	0.713	0.730	1e-167
255560637	613	DNA binding protein, putative [Ricinus c	0.916	0.641	0.744	1e-166
357513955	574	AP2-like ethylene-responsive transcripti	0.951	0.710	0.678	1e-160
297743010	542	unnamed protein product [Vitis vinifera]	0.862	0.682	0.699	1e-160
356522400	576	PREDICTED: AP2-like ethylene-responsive	0.918	0.684	0.688	1e-158
356560162	571	PREDICTED: AP2-like ethylene-responsive	0.902	0.677	0.679	1e-154
224073710	564	AP2 domain-containing transcription fact	0.864	0.657	0.693	1e-150
224058665	550	AP2 domain-containing transcription fact	0.813	0.634	0.743	1e-141
449461719	487	PREDICTED: AP2-like ethylene-responsive	0.878	0.774	0.680	1e-139
449517711	379	PREDICTED: AP2-like ethylene-responsive	0.799	0.905	0.714	1e-137

>gi|359482487|ref|XP_003632781.1| PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor AIL1-like [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 311/426 (73%), Positives = 347/426 (81%), Gaps = 26/426 (6%)

Query: 13  SWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQV 72
           SWLRQTPF     S EKS++++  +Q NNC FQ LSL M+P+S  Q+G + T   +PLQ 
Sbjct: 153 SWLRQTPF-----SGEKSSSSASADQPNNCNFQSLSLTMSPSS--QHGGV-TAVSSPLQ- 203

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
              AA+NRKR +G     +EPVPRKSID+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK
Sbjct: 204 ---AAENRKRQVGGKALTREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 260

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQTRKGRQ   GGYDKE+KAARAYDLAALKYWG TTHINFPLS+YEKELEEMK+MTRQE
Sbjct: 261 EGQTRKGRQ---GGYDKEEKAARAYDLAALKYWGPTTHINFPLSSYEKELEEMKNMTRQE 317

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD
Sbjct: 318 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 377

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASSTS 312
           IAAIKFRGT AVTNFDISRYDVKRICSSSTLIA DLAKRSPK+SAP  LEDYNSCASSTS
Sbjct: 378 IAAIKFRGTGAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPPALEDYNSCASSTS 437

Query: 313 PQP-LAISNGEASDELVDMVWSANSDDHQHQNTNT--NNETSLGASGSRNSSNPESPKC- 368
           PQP LAI+NGE S+EL DMVWS+N++DHQ Q   +    +T+L AS SR SS+  SPKC 
Sbjct: 438 PQPLLAITNGEPSEELPDMVWSSNTEDHQQQQNTSIIATDTALVASTSRTSSSLHSPKCP 497

Query: 369 ----PVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHH-VPM 423
                     +FG  GA+Y + YFS  G+KYE    + GG+H  ++RL NLG+VHH VPM
Sbjct: 498 GGGSGGPGADQFGAGGADYPQAYFSLHGSKYEA--SNAGGDHPGSDRLRNLGMVHHQVPM 555

Query: 424 FALWNE 429
           FALWNE
Sbjct: 556 FALWNE 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560637|ref|XP_002521332.1| DNA binding protein, putative [Ricinus communis] gi|223539410|gb|EEF41000.1| DNA binding protein, putative [Ricinus communis]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 317/426 (74%), Positives = 352/426 (82%), Gaps = 33/426 (7%)

Query: 13  SWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQV 72
           SWLRQT F+S  SS          N+ NN  FQPLSL M+P+S  QNG +   A++PLQV
Sbjct: 212 SWLRQTQFSSDKSS----------NEVNNYNFQPLSLTMSPSS--QNGMV---AVSPLQV 256

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
                DNRKRP+ K+ A +EPVPRKS+D+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK
Sbjct: 257 ----VDNRKRPVAKSLA-REPVPRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 311

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQTRKGRQ   GGYDKE+KAARAYDLAALKYWG TTHINFPLSTYEKELEEMKHMTRQE
Sbjct: 312 EGQTRKGRQ---GGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQE 368

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD
Sbjct: 369 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 428

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASSTS 312
           IAAIKFRGTSAVTNFDISRYDVKRICSS+TLIASDLAKRS KD AP+ LE+ NSCASSTS
Sbjct: 429 IAAIKFRGTSAVTNFDISRYDVKRICSSTTLIASDLAKRSSKDLAPMPLEEENSCASSTS 488

Query: 313 PQPLA--ISNGEASDELVDMVWSANSDDHQHQNT--NTNNETSLGASGSR-NSSNPESPK 367
           PQPL   I +GEASDEL +M+W+AN+D+HQ Q +  NT+N+  L  S SR NS+NP SPK
Sbjct: 489 PQPLLANIVSGEASDELAEMMWNANTDEHQQQQSANNTSNDMPLVGSCSRINSNNPGSPK 548

Query: 368 CPVGLTSEFGMS---GAEYNEGYFSSPGTKYENCDDDNGGNHS-TNNRLVNLGLVHHVPM 423
           C VGL SEF  S   G +YN+G FS   +KYE+ DDD+  N S ++NR+ +LGLVH VPM
Sbjct: 549 CSVGLASEFCTSGGGGGDYNQG-FSLQDSKYEDADDDDNNNISGSDNRIGSLGLVHQVPM 607

Query: 424 FALWNE 429
           FALWNE
Sbjct: 608 FALWNE 613

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513955|ref|XP_003627266.1| AP2-like ethylene-responsive transcription factor ANT [Medicago truncatula] gi|355521288|gb|AET01742.1| AP2-like ethylene-responsive transcription factor ANT [Medicago truncatula]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/436 (67%), Positives = 339/436 (77%), Gaps = 28/436 (6%)

Query: 3   HHHFLHQHQ--HSWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNG 60
           HH  +H +    SW+ QT F+S     E    +SD N     GFQ L+L M+P      G
Sbjct: 158 HHALIHDNSMYKSWMTQTQFSS-----EGKTTSSDGN-----GFQSLNLTMSPCVQNGVG 207

Query: 61  PIITTAITPLQVQGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGR 120
             + +AI+ +QV     D RKR + K+  A+EPVPRKSID+FGQRTSQYRGVTRHRWTGR
Sbjct: 208 GGVGSAISNVQVN---EDPRKRSLSKSN-AREPVPRKSIDTFGQRTSQYRGVTRHRWTGR 263

Query: 121 YEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEK 180
           YEAHLWDNSCRKEGQTRKGRQ   GGYDKE+KAA+AYDLAALKYWG TTHINFPLSTY+K
Sbjct: 264 YEAHLWDNSCRKEGQTRKGRQ---GGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYDK 320

Query: 181 ELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGT 240
           ELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGT
Sbjct: 321 ELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGT 380

Query: 241 FSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAP-- 298
           FSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLI  DLAKRSPKDS P  
Sbjct: 381 FSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLITGDLAKRSPKDSTPPA 440

Query: 299 LVLEDYNSCASSTS---PQPLAISNGEA-SDELVDMVWSANSDDHQHQN-TNTNNETSLG 353
              ED+NSC SS++   P PL I++GE  SDEL +MVW++N+D+ + QN TN    +  G
Sbjct: 441 TTAEDFNSCGSSSTLSQPPPLTITDGEQHSDELSNMVWNSNNDEQKPQNGTNITESSQHG 500

Query: 354 ASGSRNSSNPESPKCPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLV 413
           +  ++N  NP+SPKC +GL +EFG+SGA+Y  GYF+  G K++  D  N  +H  NNRL 
Sbjct: 501 SPSNKNEMNPQSPKCSLGLPNEFGVSGADYGHGYFTLHGPKFD--DGSNENDHMNNNRLG 558

Query: 414 NLGLVHHVPMFALWNE 429
           NLGLV+ VPMFALWNE
Sbjct: 559 NLGLVNQVPMFALWNE 574

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743010|emb|CBI35877.3| unnamed protein product [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 298/426 (69%), Positives = 327/426 (76%), Gaps = 56/426 (13%)

Query: 13  SWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQV 72
           SWLRQTPF     S EKS++++  +Q NNC FQ LSL M                     
Sbjct: 164 SWLRQTPF-----SGEKSSSSASADQPNNCNFQSLSLTM--------------------- 197

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
                              +PVPRKSID+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK
Sbjct: 198 -------------------KPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 238

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQTRKGRQVYLGGYDKE+KAARAYDLAALKYWG TTHINFPLS+YEKELEEMK+MTRQE
Sbjct: 239 EGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSSYEKELEEMKNMTRQE 298

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD
Sbjct: 299 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 358

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASSTS 312
           IAAIKFRGT AVTNFDISRYDVKRICSSSTLIA DLAKRSPK+SAP  LEDYNSCASSTS
Sbjct: 359 IAAIKFRGTGAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESAPPALEDYNSCASSTS 418

Query: 313 PQP-LAISNGEASDELVDMVWSANSDDHQHQNTNT--NNETSLGASGSRNSSNPESPKC- 368
           PQP LAI+NGE S+EL DMVWS+N++DHQ Q   +    +T+L AS SR SS+  SPKC 
Sbjct: 419 PQPLLAITNGEPSEELPDMVWSSNTEDHQQQQNTSIIATDTALVASTSRTSSSLHSPKCP 478

Query: 369 ----PVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHH-VPM 423
                     +FG  GA+Y + YFS  G+KYE    + GG+H  ++RL NLG+VHH VPM
Sbjct: 479 GGGSGGPGADQFGAGGADYPQAYFSLHGSKYEA--SNAGGDHPGSDRLRNLGMVHHQVPM 536

Query: 424 FALWNE 429
           FALWNE
Sbjct: 537 FALWNE 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522400|ref|XP_003529834.1| PREDICTED: AP2-like ethylene-responsive transcription factor AIL1-like [Glycine max]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 296/430 (68%), Positives = 335/430 (77%), Gaps = 36/430 (8%)

Query: 13  SWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQV 72
           SWL QT F+S             + + N C FQ LSL+M+P    QNG     AI+ +Q 
Sbjct: 170 SWLAQTQFSSD---------GKPSTEANGCNFQSLSLSMSP--GMQNG---VGAISSVQ- 214

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
             V+ D+RKR M K + A+EPVPRKSID+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK
Sbjct: 215 --VSEDSRKRVMAK-SHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 271

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQTRKGRQ   GGYDKE+KAA+AYDLAA+KYWG TTHINFPLSTYEKELEEMKHMTRQE
Sbjct: 272 EGQTRKGRQ---GGYDKEEKAAKAYDLAAIKYWGPTTHINFPLSTYEKELEEMKHMTRQE 328

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD
Sbjct: 329 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 388

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLV-LEDYNSCASS- 310
           IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIA DLAKRSPK+S  LV  ED+NSC SS 
Sbjct: 389 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESPALVPAEDFNSCGSSM 448

Query: 311 ---TSPQPLAISNGEASDELVDMVWSANSDDHQHQNTNTNNETSL--------GASGSRN 359
              + P PLAI++GE SDEL +M+W+ANSD H       N   ++          S +++
Sbjct: 449 PPASQPPPLAITDGEHSDELSNMMWNANSDVHAQNENGANINNNVTESSSQQVSPSSNKD 508

Query: 360 SSNPESPKCPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVH 419
           + NP+SPKC VGL +EFG+SGA+Y  GYF+  G KY+  D +N  +H + NRL NLGLV+
Sbjct: 509 ALNPQSPKCSVGLPNEFGVSGADYGHGYFTLDGPKYD--DGNNENDHMSTNRLGNLGLVN 566

Query: 420 HVPMFALWNE 429
            VPMFALWNE
Sbjct: 567 QVPMFALWNE 576

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560162|ref|XP_003548364.1| PREDICTED: AP2-like ethylene-responsive transcription factor AIL1-like [Glycine max]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 295/434 (67%), Positives = 334/434 (76%), Gaps = 47/434 (10%)

Query: 13  SWLRQTPFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQV 72
           SWL QT F+S             +N+ N C FQ LSL M+P+   QNG     AI+ +QV
Sbjct: 168 SWLAQTQFSSD---------GKPSNEANGCNFQSLSLTMSPSV--QNG---VGAISSVQV 213

Query: 73  QGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 132
                D+RKR M K + A+EPVPRKSID+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK
Sbjct: 214 N---EDSRKRVMAK-SHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRK 269

Query: 133 EGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQE 192
           EGQTRKGRQ   GGYDKE+KAA+AYDLAALKYWG TTHINFPLSTYEKELEEMKHMTRQE
Sbjct: 270 EGQTRKGRQ---GGYDKEEKAAKAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQE 326

Query: 193 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 252
           FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD
Sbjct: 327 FVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYD 386

Query: 253 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDS-APLVLEDYNSCASS- 310
           IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIA DLAKRSPK+S AP+   D+NSC SS 
Sbjct: 387 IAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKESPAPVPASDFNSCGSSP 446

Query: 311 ----TSPQPLAISNGEASDELVDMVWSANSDDHQHQNTN-----TNNET------SLGAS 355
               + P PLAI++GE SDEL +M+W+AN+ D Q QN +      NN T       +  S
Sbjct: 447 MPLVSQPPPLAITDGEHSDELSNMMWNANNSDEQAQNESGGAEFNNNVTESSSSQQVSPS 506

Query: 356 GSRNSSNPESPKCPVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNL 415
            ++++ NP+SP       +EFG+SGA+Y  GYF+  G KY+  D +N  +H + NRL NL
Sbjct: 507 SNKDALNPQSP-------NEFGVSGADYGHGYFTLDGPKYD--DGNNENDHMSTNRLGNL 557

Query: 416 GLVHHVPMFALWNE 429
           GLV+ VPMFALWNE
Sbjct: 558 GLVNQVPMFALWNE 571

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224073710|ref|XP_002304138.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222841570|gb|EEE79117.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 292/421 (69%), Positives = 316/421 (75%), Gaps = 50/421 (11%)

Query: 13  SWLRQT-PFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQ 71
           SWLRQT PF+SS  S           + NN  FQ L L M+P+S  QNG      I+PLQ
Sbjct: 190 SWLRQTAPFSSSGKSPI---------EANNSNFQSLLLTMSPSS--QNG---LATISPLQ 235

Query: 72  VQGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCR 131
           V     DNRKRP+ K+ A KEPV  KSID+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCR
Sbjct: 236 V----VDNRKRPVVKSLA-KEPVSHKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCR 290

Query: 132 KEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQ 191
           KEGQTRKGRQ   GGYDKE+KAARAYDLAALKYWG TTHINFPL+TYEKELEEMKHMTRQ
Sbjct: 291 KEGQTRKGRQ---GGYDKEEKAARAYDLAALKYWGPTTHINFPLNTYEKELEEMKHMTRQ 347

Query: 192 EFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY 251
           EFVA+LRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY
Sbjct: 348 EFVASLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAY 407

Query: 252 DIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASST 311
           DIAAIKFRGTSAVTNF I RYDVKRICSSS LIASDLAKRS KDSAP+ LEDYNSCASST
Sbjct: 408 DIAAIKFRGTSAVTNFGIRRYDVKRICSSSKLIASDLAKRSTKDSAPVALEDYNSCASST 467

Query: 312 SPQP-LAISNGEASDELVDMVWSANSDDHQHQNTNTNNE--TSLGASGSRNSSNPESPKC 368
           S QP  AI++ EAS EL DM+WS N+ +HQ Q +  NN    +L AS SRN     SPKC
Sbjct: 468 SSQPHFAIASSEASHELTDMMWSENTGEHQQQQSANNNNNGVTLVASTSRNPPIAASPKC 527

Query: 369 PVGLTSEFGMSGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLVHHVPMFALWN 428
            VGL S+FG+    Y++GYF   G K                        H VPMFALWN
Sbjct: 528 SVGLASDFGLGSESYSQGYFPLQGGK------------------------HQVPMFALWN 563

Query: 429 E 429
           +
Sbjct: 564 D 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058665|ref|XP_002299592.1| AP2 domain-containing transcription factor [Populus trichocarpa] gi|222846850|gb|EEE84397.1| AP2 domain-containing transcription factor [Populus trichocarpa]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 281/378 (74%), Positives = 306/378 (80%), Gaps = 29/378 (7%)

Query: 13  SWLRQT--PFASSSSSAEKSAAASDTNQGNNCGFQPLSLAMNPTSAEQNGPIITTAITPL 70
           SWLRQT  PF+SS  S          N+ NNC FQ LSL ++P+S  QNG +   AI+PL
Sbjct: 194 SWLRQTSTPFSSSGESP---------NEANNCNFQSLSLTVSPSS--QNGLV---AISPL 239

Query: 71  QVQGVAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSC 130
           QV     DN  RP+ K+ A K+PV RKSI++FGQRTSQYRGVTRHRWTGRYEAHLWDNSC
Sbjct: 240 QV----VDNSIRPVAKSLA-KKPVSRKSIETFGQRTSQYRGVTRHRWTGRYEAHLWDNSC 294

Query: 131 RKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTR 190
           RKEGQTRKGRQ   GGYDKE+KAARAYDLAALKYWG TTHINFP+ TYEKELEEM+HMTR
Sbjct: 295 RKEGQTRKGRQ---GGYDKEEKAARAYDLAALKYWGPTTHINFPVGTYEKELEEMEHMTR 351

Query: 191 QEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEA 250
           QEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEA
Sbjct: 352 QEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEA 411

Query: 251 YDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYN--SCA 308
           YDIAAIKFRG SAVTNF ISRYDVKRICSSSTLIASDLAKRS KDS P  LEDYN  + +
Sbjct: 412 YDIAAIKFRGASAVTNFGISRYDVKRICSSSTLIASDLAKRSSKDSTPTTLEDYNSCASS 471

Query: 309 SSTSPQP-LAISNGEASDELVDMVWSANSDDHQHQNT--NTNNETSLGASGSRNSSNPES 365
           SS SPQP LAI+  EASDEL DM WSAN  + Q Q +  N +N+++L AS SRNSSN  S
Sbjct: 472 SSISPQPLLAIAGCEASDELPDMAWSANRWERQQQQSVNNNSNDSTLMASSSRNSSNAAS 531

Query: 366 PKCPVGLTSEFGMSGAEY 383
           PKC VGLTS+FG  G  Y
Sbjct: 532 PKCSVGLTSDFGHGGGSY 549

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461719|ref|XP_004148589.1| PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Cucumis sativus]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 275/404 (68%), Positives = 307/404 (75%), Gaps = 27/404 (6%)

Query: 40  NNCG-FQPLSLAMNPTSAEQNGPIITTAITPLQVQGVAADNRKRPMGKATA-AKEPVPRK 97
           N CG FQ LSL M+P +++ +    T+  +P     +AAD+RKRPM  A A  KEPVPRK
Sbjct: 97  NGCGSFQSLSLGMSPANSQSDIASFTSPPSPSPPH-MAADSRKRPMAVAKAFIKEPVPRK 155

Query: 98  SIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAY 157
           SID+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQ   GGYDKE+KAARAY
Sbjct: 156 SIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQ---GGYDKEEKAARAY 212

Query: 158 DLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRH 217
           DLAALKYWG+TTHINFPLSTYE EL+EMK+MTRQEFVANLRRKSSGFSRGAS+YRGVTRH
Sbjct: 213 DLAALKYWGSTTHINFPLSTYESELDEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRH 272

Query: 218 HQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRI 277
           HQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRI
Sbjct: 273 HQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRI 332

Query: 278 CSSSTLIASDLAKRSP-KDSAPLVLEDYNSCA-SSTSPQP-LAISNG--EASDELVDMVW 332
           CSSSTLIA DLAKRSP KD  P   EDY +CA  S+S QP LAI++G  E+  EL +MVW
Sbjct: 333 CSSSTLIAGDLAKRSPLKDGTPSTTEDYTTCASPSSSSQPLLAITDGSAESHHELANMVW 392

Query: 333 SANS---DDHQHQNTNTNNETSLGASGSRNSSNPESPKC-PVGLTSEFGM--SGAEYNEG 386
             N+   D +QH       +  L   GS N +   S KC PV    EFG+   G EY++G
Sbjct: 393 CDNAVADDVNQHHENVAKMDNDLSLMGSSNRTIDPSTKCSPVQNNEEFGIGVGGGEYSQG 452

Query: 387 YFSSPGTKYENCDDDNGGNHSTNNRLVNLGLV-HHVPMFALWNE 429
           YFS    KYE  D          NR +++ L  HH PMFALWN+
Sbjct: 453 YFSMQEEKYEEGD---------QNRQMSVTLGHHHAPMFALWNQ 487

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517711|ref|XP_004165888.1| PREDICTED: AP2-like ethylene-responsive transcription factor AIL1-like [Cucumis sativus]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 263/368 (71%), Positives = 288/368 (78%), Gaps = 25/368 (6%)

Query: 75  VAADNRKRPMGKATA-AKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKE 133
           +AAD+RKRPM  A A  KEPVPRKSID+FGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKE
Sbjct: 24  MAADSRKRPMAVAKAFIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKE 83

Query: 134 GQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEF 193
           GQTRKGRQ   GGYDKE+KAARAYDLAALKYWG+TTHINFPLSTYE EL+EMK+MTRQEF
Sbjct: 84  GQTRKGRQ---GGYDKEEKAARAYDLAALKYWGSTTHINFPLSTYESELDEMKNMTRQEF 140

Query: 194 VANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDI 253
           VANLRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDI
Sbjct: 141 VANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDI 200

Query: 254 AAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSP-KDSAPLVLEDYNSCA-SST 311
           AAIKFRGTSAVTNFDISRYDVKRICSSSTLIA DLAKRSP KD  P   EDY +CA  S+
Sbjct: 201 AAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTPSTTEDYTTCASPSS 260

Query: 312 SPQP-LAISNG--EASDELVDMVWSANS---DDHQHQNTNTNNETSLGASGSRNSSNPES 365
           S QP LAI++G  E+  EL +MVW  N+   D +QH       +  L   GS N +   S
Sbjct: 261 SSQPLLAITDGSAESHHELANMVWCDNAVADDVNQHHENVAKMDNDLSLMGSSNRTIDPS 320

Query: 366 PKC-PVGLTSEFGM--SGAEYNEGYFSSPGTKYENCDDDNGGNHSTNNRLVNLGLV-HHV 421
            KC PV    EFG+   G EY++GYFS    KYE  D          NR +++ L  HH 
Sbjct: 321 TKCSPVQNNEEFGIGVGGGEYSQGYFSMQEEKYEEGD---------QNRQMSVTLGHHHA 371

Query: 422 PMFALWNE 429
           PMFALWN+
Sbjct: 372 PMFALWNQ 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
TAIR|locus:2030265	415	AT1G72570 [Arabidopsis thalian	0.594	0.614	0.706	1.2e-95
TAIR|locus:2173009	558	AIL5 "AINTEGUMENTA-like 5" [Ar	0.519	0.399	0.753	4e-90
TAIR|locus:2178915	584	BBM "BABY BOOM" [Arabidopsis t	0.466	0.342	0.81	7.1e-90
TAIR|locus:2091891	574	PLT1 "PLETHORA 1" [Arabidopsis	0.552	0.412	0.706	8.6e-88
TAIR|locus:2008216	568	PLT2 "PLETHORA 2" [Arabidopsis	0.566	0.427	0.682	1.4e-87
TAIR|locus:2137559	555	ANT "AINTEGUMENTA" [Arabidopsi	0.561	0.434	0.684	2.3e-87
TAIR|locus:2155680	498	AIL7 "AINTEGUMENTA-like 7" [Ar	0.568	0.489	0.634	3.9e-83
TAIR|locus:2200477	345	ADAP "ARIA-interacting double	0.519	0.646	0.557	2.9e-64
TAIR|locus:2017829	313	WRI4 "WRINKLED 4" [Arabidopsis	0.393	0.539	0.668	2.3e-62
TAIR|locus:2005493	432	AP2 "APETALA 2" [Arabidopsis t	0.433	0.430	0.497	1.1e-41

TAIR|locus:2030265 AT1G72570 [Arabidopsis thaliana (taxid:3702)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 183/259 (70%), Positives = 208/259 (80%)

Query:    39 GNNCGFQPLSLAMNPTSAEQNGPIITTAITPLQVQG-VAADNRKRPMGKATAAKEPVPRK 97
             G N     LSLA++  +      +I  +    +V+  V  D +++ +      KE VPRK
Sbjct:   156 GYNTNGSMLSLALSHGACSD---LINESNVSARVEEPVKVDEKRKRLVVKPQVKESVPRK 212

Query:    98 SIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAY 157
             S+DS+GQRTSQYRGVTRHRWTGRYEAHLWDNSC+KEGQTR+GRQVYLGGYD+E+KAARAY
Sbjct:   213 SVDSYGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRRGRQVYLGGYDEEEKAARAY 272

Query:   158 DLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRH 217
             DLAALKYWG TTH+NFPLS YEKE+EE+ +M RQEFVA LRR SSGFSRGASVYRGVTRH
Sbjct:   273 DLAALKYWGPTTHLNFPLSNYEKEIEELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRH 332

Query:   218 HQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTSAVTNFDISRYDVKRI 277
             HQHGRWQARIGRVAGNKDLYLGTFSTQ      YDIAAIKFRG +AVTNFDI+RYDVKRI
Sbjct:   333 HQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDINRYDVKRI 392

Query:   278 CSSSTLIASDLAKRSPKDS 296
             CSSST++ SD AK SP  S
Sbjct:   393 CSSSTIVDSDQAKHSPTSS 411

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2173009 AIL5 "AINTEGUMENTA-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 168/223 (75%), Positives = 189/223 (84%)

Query:    75 VAADNRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEG 134
             V++ ++++P   A +   P P+K+++SFGQRTS YRGVTRHRWTGRYEAHLWDNSCR+EG
Sbjct:   170 VSSVHKQQPNPLAVSEASPTPKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREG 229

Query:   135 QTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFV 194
             Q+RKGRQVYLGGYDKEDKAARAYDLAALKYWG TT  NFP+S YE ELEEMKHMTRQEFV
Sbjct:   230 QSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYESELEEMKHMTRQEFV 289

Query:   195 ANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIA 254
             A+LRRKSSGFSRGAS+YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQ      YDIA
Sbjct:   290 ASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIA 349

Query:   255 AIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSA 297
             AIKFRG +AVTNFDISRYDVK I S +  +   + K SP  +A
Sbjct:   350 AIKFRGLNAVTNFDISRYDVKSIASCNLPVGGLMPKPSPATAA 392

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009791 "post-embryonic development" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0040019 "positive regulation of embryonic development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2178915 BBM "BABY BOOM" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 7.1e-90, Sum P(2) = 7.1e-90
 Identities = 162/200 (81%), Positives = 176/200 (88%)

Query:    92 EPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKED 151
             E  P+K+I+SFGQRTS YRGVTRHRWTGRYEAHLWDNSC++EGQTRKGRQVYLGGYDKE+
Sbjct:   194 ETTPKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEE 253

Query:   152 KAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVY 211
             KAARAYDLAALKYWG TT  NFPLS YEKE+EEMKHMTRQE+VA+LRRKSSGFSRGAS+Y
Sbjct:   254 KAARAYDLAALKYWGTTTTTNFPLSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIY 313

Query:   212 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTSAVTNFDISR 271
             RGVTRHHQHGRWQARIGRVAGNKDLYLGTF TQ      YDIAAIKFRG SAVTNFD++R
Sbjct:   314 RGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNR 373

Query:   272 YDVKRICSSSTLIASDLAKR 291
             Y+VK I  S +L     AKR
Sbjct:   374 YNVKAILESPSLPIGSSAKR 393

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0009887 "organ morphogenesis" evidence=ISS;IMP

TAIR|locus:2091891 PLT1 "PLETHORA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 176/249 (70%), Positives = 200/249 (80%)

Query:    45 QPLSLAMNPTSAEQNGPIITTAITPLQVQGVAADNRKRPMGKATAAKEPV-PRKSIDSFG 103
             Q L+L+M  T+A  N  ++  A +P +  G   DN     G A A  E   PR+++D+FG
Sbjct:   127 QSLTLSMG-TTAGNN--VVDKA-SPSETTG---DNAS---GGALAVVETATPRRALDTFG 176

Query:   104 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALK 163
             QRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ+RKGRQVYLGGYDKEDKAAR+YDLAALK
Sbjct:   177 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALK 236

Query:   164 YWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRW 223
             YWG +T  NFP++ YEKE+EEMKHMTRQEFVA +RRKSSGFSRGAS+YRGVTRHHQHGRW
Sbjct:   237 YWGPSTTTNFPITNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRW 296

Query:   224 QARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTL 283
             QARIGRVAGNKDLYLGTFST+      YDIAAIKFRG +AVTNF+I+RYDVK I  SSTL
Sbjct:   297 QARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESSTL 356

Query:   284 -IASDLAKR 291
              I    AKR
Sbjct:   357 PIGGGAAKR 365

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2008216 PLT2 "PLETHORA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 170/249 (68%), Positives = 198/249 (79%)

Query:    45 QPLSLAMNPTSAEQNGPIITTAITPLQVQGVAADNRKRPMGKATAA-KEPVPRKSIDSFG 103
             Q L+L+M  T A     + T   +P +    +ADN       +  A  E  PR+++++FG
Sbjct:   130 QSLTLSMGSTGAAA-AEVATVKASPAET---SADNSSSTTNTSGGAIVEATPRRTLETFG 185

Query:   104 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALK 163
             QRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ+RKGRQVYLGGYDKE+KAARAYDLAALK
Sbjct:   186 QRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALK 245

Query:   164 YWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRW 223
             YWG +T  NFP++ YEKE+EEMK+MTRQEFVA++RRKSSGFSRGAS+YRGVTRHHQHGRW
Sbjct:   246 YWGPSTTTNFPITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRW 305

Query:   224 QARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTL 283
             QARIGRVAGNKDLYLGTFST+      YDIAAIKFRG +AVTNF+I+RYDVK I  S+TL
Sbjct:   306 QARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESNTL 365

Query:   284 -IASDLAKR 291
              I    AKR
Sbjct:   366 PIGGGAAKR 374

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007389 "pattern specification process" evidence=IMP

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0048364 "root development" evidence=IGI;IMP

GO:0051302 "regulation of cell division" evidence=IMP

TAIR|locus:2137559 ANT "AINTEGUMENTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 169/247 (68%), Positives = 195/247 (78%)

Query:    52 NPTSAEQNGPIITTAITPLQV----QGVAADNRKRPMGKATAA--KEPVPRKSIDSFGQR 105
             N     QN   I+ A+    V      +AA  +KR          K+ V RKSID+FGQR
Sbjct:   221 NQNHQSQNHQQISEALVETSVGFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQR 280

Query:   106 TSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYW 165
             TSQYRGVTRHRWTGRYEAHLWDNS +KEG +RKGRQVYLGGYD E+KAARAYDLAALKYW
Sbjct:   281 TSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYW 340

Query:   166 GATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQA 225
             G +TH NF    Y+KE+E+MK+MTRQE+VA+LRRKSSGFSRGAS+YRGVTRHHQHGRWQA
Sbjct:   341 GPSTHTNFSAENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQA 400

Query:   226 RIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIA 285
             RIGRVAGNKDLYLGTF TQ      YD+AAIKFRGT+AVTNFDI+RYDV RI SS+TL++
Sbjct:   401 RIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLS 460

Query:   286 SDLAKRS 292
              +LA+R+
Sbjct:   461 GELARRN 467

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;TAS

GO:0042127 "regulation of cell proliferation" evidence=RCA;IMP

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0006306 "DNA methylation" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=IMP;RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0007276 "gamete generation" evidence=IMP

TAIR|locus:2155680 AIL7 "AINTEGUMENTA-like 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 158/249 (63%), Positives = 193/249 (77%)

Query:    79 NRKRPMGKATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRK 138
             N+K+ + K   + +   +K +++ GQRTS YRGVTRHRWTGRYEAHLWDNSCR+EGQ RK
Sbjct:   203 NKKKTVSKKETSDDS-KKKIVETLGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARK 261

Query:   139 GRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLR 198
             GRQVYLGGYDKED+AARAYDLAALKYWG+T   NFP+S+Y KELEEM HMT+QEF+A+LR
Sbjct:   262 GRQVYLGGYDKEDRAARAYDLAALKYWGSTATTNFPVSSYSKELEEMNHMTKQEFIASLR 321

Query:   199 RKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKF 258
             RKSSGFSRGAS+YRGVTRHHQ GRWQARIGRVAGNKDLYLGTF+T+      YDIAAIKF
Sbjct:   322 RKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKF 381

Query:   259 RGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASSTS-PQPLA 317
             RG +AVTNF+++RYD++ + +SS  +    AKR       L LE  +S +S  +  Q   
Sbjct:   382 RGINAVTNFEMNRYDIEAVMNSSLPVGGAAAKRH---KLKLALESPSSSSSDHNLQQQQL 438

Query:   318 ISNGEASDE 326
             + +   SD+
Sbjct:   439 LPSSSPSDQ 447

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0060771 "phyllotactic patterning" evidence=IGI

GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2200477 ADAP "ARIA-interacting double AP2 domain protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
 Identities = 126/226 (55%), Positives = 163/226 (72%)

Query:    86 KATAAKEPVPRKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLG 145
             KA   +   PR   D+  QR+S +RGVTRHRWTGRYEAHLWD +   E QT+KGRQVYLG
Sbjct:    39 KAKRKRRSQPR---DAPPQRSSVHRGVTRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLG 95

Query:   146 GYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFS 205
              YD+ED AARAYDLAALKYWG  T +NFPL  YE++++EM+  +++E++ +LRRKSSGFS
Sbjct:    96 AYDEEDAAARAYDLAALKYWGRDTILNFPLCNYEEDIKEMESQSKEEYIGSLRRKSSGFS 155

Query:   206 RGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTSAVT 265
             RG S YRGV +HH +GRW+ARIGRV GNK LYLGT++TQ      YDIAAI++RG +AVT
Sbjct:   156 RGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVT 215

Query:   266 NFDISRYDVKRICSSSTLIASDLAKRSPKDSAPLVLEDYNSCASST 311
             NFDISRY    +  +    A++L +    D +P +  ++ S  S +
Sbjct:   216 NFDISRYLKLPVPENPIDTANNLLESPHSDLSPFIKPNHESDLSQS 261

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0009887 "organ morphogenesis" evidence=ISS

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2017829 WRI4 "WRINKLED 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 113/169 (66%), Positives = 141/169 (83%)

Query:   104 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALK 163
             QR+S YRGVTRHRWTGRYEAHLWD +   + QT+KGRQVYLG YD+E+ AARAYDLAALK
Sbjct:    48 QRSSPYRGVTRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAALK 107

Query:   164 YWGATTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRW 223
             YWG  T +NFPL +Y+++++EM+  +++E++ +LRRKSSGFSRG S YRGV RHH +GRW
Sbjct:   108 YWGRDTLLNFPLPSYDEDVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRW 167

Query:   224 QARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKFRGTSAVTNFDISRY 272
             +ARIGRV GNK LYLGT++TQ      YDIAAI++RG +AVTNFD+SRY
Sbjct:   168 EARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDVSRY 216

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IPI

GO:0045723 "positive regulation of fatty acid biosynthetic process" evidence=IGI;IMP

GO:1901959 "positive regulation of cutin biosynthetic process" evidence=IGI

GO:0003677 "DNA binding" evidence=ISS

GO:0009887 "organ morphogenesis" evidence=ISS

TAIR|locus:2005493 AP2 "APETALA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 101/203 (49%), Positives = 130/203 (64%)

Query:    85 GKAT----AAKEPV-P-RKSIDSFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRK 138
             GKAT    A  EP  P +KS      R+SQYRGVT +R TGR+E+H+WD  C        
Sbjct:   102 GKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWD--C-------- 151

Query:   139 GRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKHMTRQEFVANLR 198
             G+QVYLGG+D    AARAYD AA+K+ G    INF +  Y+ +L++M ++T++EFV  LR
Sbjct:   152 GKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIDDYDDDLKQMTNLTKEEFVHVLR 211

Query:   199 RKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQXXXXXXYDIAAIKF 258
             R+S+GF RG+S YRGVT H + GRW+AR+G+  G K +YLG F T+      YD AAIK 
Sbjct:   212 RQSTGFPRGSSKYRGVTLH-KCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKC 270

Query:   259 RGTSAVTNFDISRYDVKRICSSS 281
              G  AVTNFD S YD +    SS
Sbjct:   271 NGKDAVTNFDPSIYDEELNAESS 293

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0010073 "meristem maintenance" evidence=IMP

GO:0009888 "tissue development" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA;TAS

GO:0048481 "ovule development" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009908 "flower development" evidence=TAS

GO:0019953 "sexual reproduction" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1PFE1	AIL1_ARATH	No assigned EC number	0.6768	0.6596	0.6819	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034094001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (514 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	8e-27
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-23
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-22
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-19
pfam00847	53	pfam00847, AP2, AP2 domain	4e-10
pfam00847	53	pfam00847, AP2, AP2 domain	5e-10

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  101 bits (254), Expect = 8e-27
 Identities = 34/64 (53%), Positives = 39/64 (60%), Gaps = 1/64 (1%)

Query: 211 YRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDIS 270
           YRGV +    G+W A I   +  K ++LGTF T EEAA AYD AA KFRG SA  NF  S
Sbjct: 2   YRGVRQRPW-GKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 271 RYDV 274
            YD 
Sbjct: 61  LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 91.9 bits (229), Expect = 3e-23
 Identities = 33/62 (53%), Positives = 41/62 (66%), Gaps = 1/62 (1%)

Query: 209 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFD 268
           S YRGV +    G+W A I   +G + ++LGTF T EEAA AYD AA+K RG+SAV NF 
Sbjct: 1   SKYRGVRQRPW-GKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

Query: 269 IS 270
            S
Sbjct: 60  DS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score = 89.2 bits (222), Expect = 3e-22
 Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 9/73 (12%)

Query: 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGA 167
           +YRGV +  W G++ A + D S         G++V+LG +D  ++AARAYD AA K+ G 
Sbjct: 1   KYRGVRQRPW-GKWVAEIRDPSK--------GKRVWLGTFDTAEEAARAYDRAAFKFRGR 51

Query: 168 TTHINFPLSTYEK 180
           +  +NFP S Y+ 
Sbjct: 52  SARLNFPNSLYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 81.5 bits (202), Expect = 2e-19
 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 9/70 (12%)

Query: 107 SQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWG 166
           S+YRGV +  W G++ A + D S         GR+++LG +D  ++AARAYD AALK  G
Sbjct: 1   SKYRGVRQRPW-GKWVAEIRDPS--------GGRRIWLGTFDTAEEAARAYDRAALKLRG 51

Query: 167 ATTHINFPLS 176
           ++  +NFP S
Sbjct: 52  SSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 54.6 bits (132), Expect = 4e-10
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 107 SQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWG 166
           S Y+GV   +  GR+ A + D         +K ++  LG +  E +AARA   A LK  G
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPG------EKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 209 SVYRGVTRHHQHGRWQARIGRVA--GNKDLYLGTFSTQEEAAEAYDIAAIKFRG 260
           S Y+GV    + GRW A I        K   LGTF T EEAA A   A +K RG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.76
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.75
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.73
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.72
PHA00280	121	putative NHN endonuclease	99.53
PHA00280	121	putative NHN endonuclease	99.3
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.05
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	98.99

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.76  E-value=1.4e-18  Score=136.03  Aligned_cols=63  Identities=46%  Similarity=0.942  Sum_probs=59.3

Q ss_pred             ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCcchh
Q 014204          108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLSTYE  179 (429)
Q Consensus       108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~~NFp~~~ye  179 (429)
                      +|+||+++++ |||+|+|++        +.+|+++|||+|+|+||||+|||.|+++++|..+.+|||.+.|+
T Consensus         1 ~~kGV~~~~~-gkw~A~I~~--------~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPW-GKWVAEIRD--------PSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCC-CeEEEEEEe--------cCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            4999999887 999999987        55899999999999999999999999999999999999999986

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.75  E-value=1.5e-18  Score=134.34  Aligned_cols=61  Identities=48%  Similarity=0.893  Sum_probs=56.6

Q ss_pred             cceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCc
Q 014204          107 SQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLS  176 (429)
Q Consensus       107 S~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~~NFp~~  176 (429)
                      |+|+||+++++ |||+|+|++        ...|+++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~~-gkw~A~I~~--------~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPW-GKWVAEIRD--------PSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCC-CcEEEEEEe--------CCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999998 999999987        33499999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.73  E-value=6e-18  Score=132.49  Aligned_cols=63  Identities=54%  Similarity=0.807  Sum_probs=58.7

Q ss_pred             ccccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHhhCCCCCCCCCCCccc
Q 014204          210 VYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYD  273 (429)
Q Consensus       210 ~yrGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l~G~~a~~NFp~s~y~  273 (429)
                      +|+||++ +++|||+|+|+.+.+++.++||+|+|+||||+|||.++++++|..+++|||.++|+
T Consensus         1 ~~kGV~~-~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQ-RPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEe-CCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            4899997 56799999998666999999999999999999999999999999999999999885

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.72  E-value=8.6e-18  Score=130.12  Aligned_cols=61  Identities=54%  Similarity=0.845  Sum_probs=55.3

Q ss_pred             cccccceeeccCceEEeeeccccCCceeecCCCCcHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 014204          209 SVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDIS  270 (429)
Q Consensus       209 S~yrGV~r~~~~gkW~A~Ir~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l~G~~a~~NFp~s  270 (429)
                      |+|+||++++ +|||+|+|+....+++++||+|+|+||||+|||.++++++|..+.+|||.+
T Consensus         1 s~~~GV~~~~-~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRP-WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECC-CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            5899999764 699999997554599999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.53  E-value=2.9e-14  Score=125.30  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHhccccc---cccCCC-cchhhhHHHhhhhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeec
Q 014204          153 AARAYDLAALKYWGATT---HINFPL-STYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIG  228 (429)
Q Consensus       153 AArAYD~Aal~~~G~~a---~~NFp~-~~yenEIeeLR~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir  228 (429)
                      +-+++..+.+..+|.-.   .+.+-. ....+.+++|+.++..|+..+.+..+    +++|+|+||+|++..|||+|+| 
T Consensus        11 ~~~~Hrlvw~~~~G~~P~g~~VdHidg~~~dnri~NLr~~T~~eN~~N~~~~~----~N~SG~kGV~~~k~~~kw~A~I-   85 (121)
T PHA00280         11 APRRHIQVWEAANGPIPKGYYIDHIDGNPLNDALDNLRLALPKENSWNMKTPK----SNTSGLKGLSWSKEREMWRGTV-   85 (121)
T ss_pred             hhhHhHhhhHHHHCCCCCCCEEEcCCCCCCCCcHHHhhhcCHHHHhcccCCCC----CCCCCCCeeEEecCCCeEEEEE-
Confidence            34567777777888542   122221 23457899999999999998876543    7899999999999999999999 


Q ss_pred             cccCCceeecCCCCcHHHHHHHHHHHHHHhhCCCCC
Q 014204          229 RVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAV  264 (429)
Q Consensus       229 ~~~~~k~i~LGtF~t~EeAArAYD~Aa~~l~G~~a~  264 (429)
                       .++||+++||.|+++|+|+.||+ ++++|+|.+|.
T Consensus        86 -~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         86 -TAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             -EECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence             48999999999999999999997 77889998875

>PHA00280 putative NHN endonuclease

Probab=99.30  E-value=5.3e-12  Score=111.10  Aligned_cols=56  Identities=18%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CCCcceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhcccccc
Q 014204          104 QRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTH  170 (429)
Q Consensus       104 ~~~S~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~  170 (429)
                      ..+|+|+||+|++.+|||+|+|          ..+||+++||.|+++|+|+.||+ ++.+|+|.++.
T Consensus        64 ~N~SG~kGV~~~k~~~kw~A~I----------~~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         64 SNTSGLKGLSWSKEREMWRGTV----------TAEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCeeEEecCCCeEEEEE----------EECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            5789999999999999999999          55999999999999999999997 77899998874

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.05  E-value=5.1e-10  Score=84.73  Aligned_cols=56  Identities=30%  Similarity=0.409  Sum_probs=47.4

Q ss_pred             cceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccc
Q 014204          107 SQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGA  167 (429)
Q Consensus       107 S~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~  167 (429)
                      |+|+||++++..++|+|.|++...  .|   .+|.++||.|++++||++|++.++++++|.
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~--~g---~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSE--NG---KRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCC--TT---EEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEccc--Cc---ccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999987311  11   249999999999999999999999999873

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=98.99  E-value=8.2e-10  Score=83.57  Aligned_cols=53  Identities=34%  Similarity=0.535  Sum_probs=46.6

Q ss_pred             cccccceeeccCceEEeeecccc-C--CceeecCCCCcHHHHHHHHHHHHHHhhCC
Q 014204          209 SVYRGVTRHHQHGRWQARIGRVA-G--NKDLYLGTFSTQEEAAEAYDIAAIKFRGT  261 (429)
Q Consensus       209 S~yrGV~r~~~~gkW~A~Ir~~~-~--~k~i~LGtF~t~EeAArAYD~Aa~~l~G~  261 (429)
                      |+|+||++++..++|+|+|+... +  ++.++||.|.++|||++||+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999997532 1  49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	429
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		6e-04

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGA 167
            YRGV +  W G++ A + D +       + G +V+LG ++  + AA AYD AA +  G+
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGS 53
Query: 168 TTHINFPL 175
              +NFPL
Sbjct: 54  RALLNFPL 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-14
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-12

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 211 YRGVTRHHQHGRWQARIGRVAGNKD-LYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNF 267
           YRGV R    G++ A I   A N   ++LGTF T E+AA AYD AA + RG+ A+ NF
Sbjct: 3   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGA 167
            YRGV +  W G++ A + D         + G +V+LG ++  + AA AYD AA +  G+
Sbjct: 2   HYRGVRQRPW-GKFAAEIRD-------PAKNGARVWLGTFETAEDAALAYDRAAFRMRGS 53

Query: 168 TTHINFPL 175
              +NFPL
Sbjct: 54  RALLNFPL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.86
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.83
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.6
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.23
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	87.15

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.86  E-value=3e-22  Score=155.90  Aligned_cols=61  Identities=39%  Similarity=0.847  Sum_probs=56.3

Q ss_pred             ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCc
Q 014204          108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLS  176 (429)
Q Consensus       108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~~NFp~~  176 (429)
                      +||||++++| |||+|+|+++       ..+|++||||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus         2 ~yrGV~~r~~-gkw~A~I~~~-------~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCC-CcEEEEEccc-------cCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            5999999987 9999999984       23589999999999999999999999999999999999964

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.83  E-value=3.2e-21  Score=150.12  Aligned_cols=60  Identities=43%  Similarity=0.711  Sum_probs=55.4

Q ss_pred             ccccceeeccCceEEeeecccc-CCceeecCCCCcHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 014204          210 VYRGVTRHHQHGRWQARIGRVA-GNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDIS  270 (429)
Q Consensus       210 ~yrGV~r~~~~gkW~A~Ir~~~-~~k~i~LGtF~t~EeAArAYD~Aa~~l~G~~a~~NFp~s  270 (429)
                      +||||++ +++|||+|+|+.+. +|+++|||+|+|+||||+|||.|+++++|..+.||||.+
T Consensus         2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999996 46999999999776 479999999999999999999999999999999999974

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.60  E-value=0.0028  Score=57.27  Aligned_cols=88  Identities=11%  Similarity=0.064  Sum_probs=59.9

Q ss_pred             HHHHHHHHhccccc---cccCCCc-chhhhHHHhhhhhhhhhhhhhhcccCCCCCCCcccccceeeccCceEEeeecccc
Q 014204          156 AYDLAALKYWGATT---HINFPLS-TYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVA  231 (429)
Q Consensus       156 AYD~Aal~~~G~~a---~~NFp~~-~yenEIeeLR~mTkeE~va~lRr~ssg~s~~~S~yrGV~r~~~~gkW~A~Ir~~~  231 (429)
                      ++.+.+..+.|...   ..++-.. ...+.+++|+.++..|+..+......    . ..++||.+ ...++|.+.|.  .
T Consensus        55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~----~-~~~~g~~~-~~~~k~~~vi~--~  126 (174)
T 1u3e_M           55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT----L-NVSKAQQI-AKIKNQKPIIV--I  126 (174)
T ss_dssp             HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC----C-CCHHHHHH-HHHHTCCCEEE--E
T ss_pred             eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc----c-cceeeeee-ccCCCCceEEE--E
Confidence            45556666666431   2233222 23568899999999999887655331    1 12578876 56678999883  4


Q ss_pred             CCceeecCCCCcHHHHHHHHH
Q 014204          232 GNKDLYLGTFSTQEEAAEAYD  252 (429)
Q Consensus       232 ~~k~i~LGtF~t~EeAArAYD  252 (429)
                      + +.++||.|++.+|||++|.
T Consensus       127 ~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          127 S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             C-TTSCEEEESCHHHHHHHHT
T ss_pred             c-CCceEEeeCCHHHHHHHHC
Confidence            5 6778999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.23  E-value=0.079  Score=42.22  Aligned_cols=24  Identities=25%  Similarity=0.453  Sum_probs=21.1

Q ss_pred             CCCcceeceeEecCCCeEEEEEec
Q 014204          104 QRTSQYRGVTRHRWTGRYEAHLWD  127 (429)
Q Consensus       104 ~~~S~yrGV~~~~~~grW~A~I~~  127 (429)
                      ...|+|+||+|.++.+.|.|+-.+
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e   26 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD   26 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec
Confidence            467899999999999999999865

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=87.15  E-value=0.38  Score=38.32  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=22.0

Q ss_pred             CCCcccccceeeccCceEEeeeccccCCce
Q 014204          206 RGASVYRGVTRHHQHGRWQARIGRVAGNKD  235 (429)
Q Consensus       206 ~~~S~yrGV~r~~~~gkW~A~Ir~~~~~k~  235 (429)
                      ...|+|.||+|.+..+.|.|.-.  .+|++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~--e~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFY--DGASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEE--ETTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEe--cCCeE
Confidence            34689999999999999999974  44544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	429
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	5e-21
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	4e-19

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.0 bits (208), Expect = 5e-21
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGA 167
            YRGV +  W G++ A + D +       + G +V+LG ++  + AA AYD AA +  G+
Sbjct: 2   HYRGVRQRPW-GKFAAEIRDPA-------KNGARVWLGTFETAEDAALAYDRAAFRMRGS 53

Query: 168 TTHINFPL 175
              +NFPL
Sbjct: 54  RALLNFPL 61

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.6 bits (194), Expect = 4e-19
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 211 YRGVTRHHQHGRWQARIGRVAGN-KDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNF 267
           YRGV R    G++ A I   A N   ++LGTF T E+AA AYD AA + RG+ A+ NF
Sbjct: 3   YRGV-RQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.87
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.84

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=2.8e-23  Score=159.86  Aligned_cols=61  Identities=39%  Similarity=0.847  Sum_probs=56.7

Q ss_pred             ceeceeEecCCCeEEEEEecCCccccCcccCCeEEecCCCCCHHHHHHHHHHHHHHhccccccccCCCc
Q 014204          108 QYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEDKAARAYDLAALKYWGATTHINFPLS  176 (429)
Q Consensus       108 ~yrGV~~~~~~grW~A~I~~~~~~~~~~~~~gk~i~LG~f~teEeAArAYD~Aal~~~G~~a~~NFp~~  176 (429)
                      +||||+++++ |||+|+||++       ..+++++|||+|+|+||||+|||.|+++++|+.+.+|||+.
T Consensus         2 ~yrGVr~r~~-gkw~A~Ir~~-------~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPW-GKFAAEIRDP-------AKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETT-TEEEEEEEET-------TTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCC-CCEEEEEecC-------CCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            4999999986 9999999985       46789999999999999999999999999999999999974

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=6.1e-22  Score=152.33  Aligned_cols=60  Identities=42%  Similarity=0.695  Sum_probs=54.5

Q ss_pred             ccccceeeccCceEEeeeccc-cCCceeecCCCCcHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 014204          210 VYRGVTRHHQHGRWQARIGRV-AGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDIS  270 (429)
Q Consensus       210 ~yrGV~r~~~~gkW~A~Ir~~-~~~k~i~LGtF~t~EeAArAYD~Aa~~l~G~~a~~NFp~s  270 (429)
                      .||||+++ ++|||+|+|+.+ .+++++|||+|+|+||||+|||.|+++++|.++.+|||+.
T Consensus         2 ~yrGVr~r-~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQR-PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEE-TTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeEC-CCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            49999864 689999999865 4668999999999999999999999999999999999974