Citrus Sinensis ID: 014206

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVLPLLIHPIKS
ccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccc
cccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccc
mdekgkfksclgDDIKGILALYEAAYLlgeeestiFHEAINFTTTHLEEYVKkhnddddddggYFSALVKHALELPLHWRMVRLEARWFIDVyergtdmnPVLVELAKLDFNSVQAAHQDELKYVSWWwrktglgelhFARDRIVENFFWALGeiwepqfgycrrmSTKVNALITTVDDVYDVYGTLDELEQFTNAVErwdvnamdqlPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKwyssgyiptldeyienawvsvsGPVILLHAYSLIANPAKEEALQFLQeyphiirwpSMIFRLANDlatssdevkrgdvpkAIQCYmhetgasesDARLHIRDLITAAWMKMnnkregdenpdhlllpnNFVQFAMNLARMAQctyqngdghtvqdnsknrvlpllihpiks
mdekgkfksclgddiKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLAtssdevkrgdVPKAIQCYMHetgasesdarLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGdghtvqdnsknrvlpllihpiks
MDEKGKFKSCLGDDIKGIlalyeaayllgeeeSTIFHEAINFTTTHLEEYVKKHNddddddGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVLPLLIHPIKS
*******KSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLAT*******GDVPKAIQCYMHETGA***DARLHIRDLITAAWMKM***********HLLLPNNFVQFAMNLARMAQCTYQNGDGH*********VLPLLI*****
*DEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYV***********GYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHET****SDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVLPLLIHPIK*
********SCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVLPLLIHPIKS
****GKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVLPLLIHPIK*
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MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVLPLLIHPIKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query429 2.2.26 [Sep-21-2011]
Q8L5K4600 Gamma-terpinene synthase, N/A no 0.983 0.703 0.688 1e-175
Q93X23597 Myrcene synthase, chlorop N/A no 0.965 0.693 0.612 1e-156
Q6PWU2590 (-)-alpha-terpineol synth no no 0.969 0.705 0.609 1e-154
B3TPQ7592 Alpha-terpineol synthase, N/A no 0.965 0.699 0.559 1e-136
G1JUH1607 (-)-camphene/tricyclene s N/A no 0.972 0.686 0.506 1e-126
Q9LRZ6598 Beta-myrcene/(E)-beta-oci yes no 0.972 0.697 0.497 1e-123
P0DI77600 1,8-cineole synthase 2, c no no 0.969 0.693 0.503 1e-122
P0DI76600 1,8-cineole synthase 1, c no no 0.969 0.693 0.503 1e-122
A7IZZ1622 (-)-limonene synthase, ch N/A no 0.972 0.670 0.517 1e-122
A4FVP2565 Tricyclene synthase, chlo no no 0.934 0.709 0.502 1e-117
>sp|Q8L5K4|GTPS_CITLI Gamma-terpinene synthase, chloroplastic OS=Citrus limon PE=1 SV=1 Back     alignment and function desciption
 Score =  615 bits (1587), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/430 (68%), Positives = 350/430 (81%), Gaps = 8/430 (1%)

Query: 1   MDEKGKFK-SCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDD 59
           MDEKG FK S   D+ KG+LALYEAAYLL EEES+IF +AI FTT +L+E+V KH D D 
Sbjct: 175 MDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFRDAIRFTTAYLKEWVAKH-DIDK 233

Query: 60  DDGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQ 119
           +D  Y   LVKHALELPLHWRM RLEARWFIDVYE G DMNP+L+ELAK+D+N VQA HQ
Sbjct: 234 NDNEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAVHQ 293

Query: 120 DELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVD 178
           ++LKYVS WW+KTGLGE L+FARDR+VENFFW +G+I+EPQFGYCRRMS  VN L+T++D
Sbjct: 294 EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSID 353

Query: 179 DVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGV-H 237
           DVYDVYGTLDELE FT+AVERWD    +QLPYYMK+CFH L++S NEM F AL+DQ V  
Sbjct: 354 DVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGM 413

Query: 238 VVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAK 297
           ++PYLKKAWAD CKS+L+EAKWY+SGYIPTL EY+ENAW+SV+ PV+LLHAY+  ANP  
Sbjct: 414 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPIT 473

Query: 298 EEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLH 357
           +EAL+FLQ+ P IIR  SMI RL +DL TSSDE+KRGDVPK+IQCYMHETG SE +AR H
Sbjct: 474 KEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETGVSEDEAREH 533

Query: 358 IRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKN 417
           IRDLI   WMKMN+ R G  NP +  LP+ F+  AMNL RM+QC Y  GDGH VQ+N+K+
Sbjct: 534 IRDLIAETWMKMNSARFG--NPPY--LPDVFIGIAMNLVRMSQCMYLYGDGHGVQENTKD 589

Query: 418 RVLPLLIHPI 427
           RVL L I PI
Sbjct: 590 RVLSLFIDPI 599
Monoterpene synthase which catalyzes the conversion of geranyl diphosphate to gamma-terpinene and the minor products limonene, alpha-pinene, beta-pinene, alpha-terpinolene, alpha-thujene, alpha-terpinene, myrcene and sabinene.
Citrus limon (taxid: 2708)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 1EC: 1EC: 4
>sp|Q93X23|MYRS_QUEIL Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1 Back     alignment and function description
>sp|Q6PWU2|ATESY_VITVI (-)-alpha-terpineol synthase OS=Vitis vinifera PE=1 SV=1 Back     alignment and function description
>sp|B3TPQ7|ATESY_MAGGA Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora PE=1 SV=1 Back     alignment and function description
>sp|G1JUH1|TPS3_SOLLC (-)-camphene/tricyclene synthase, chloroplastic OS=Solanum lycopersicum GN=TPS3 PE=1 SV=1 Back     alignment and function description
>sp|Q9LRZ6|MYRS2_ARATH Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=1 SV=1 Back     alignment and function description
>sp|P0DI77|CIN2_ARATH 1,8-cineole synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS23 PE=1 SV=1 Back     alignment and function description
>sp|P0DI76|CIN1_ARATH 1,8-cineole synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1 Back     alignment and function description
>sp|A7IZZ1|TPS1_CANSA (-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1 Back     alignment and function description
>sp|A4FVP2|TPS03_ARATH Tricyclene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
61161985 617 (E)-beta-ocimene synthase [Citrus unshiu 0.990 0.688 0.974 0.0
49659439 600 gamma-terpinene synthase [Citrus unshiu] 0.983 0.703 0.695 1e-174
49659441 600 gamma-terpinene synthase [Citrus unshiu] 0.983 0.703 0.695 1e-174
75245637 600 RecName: Full=Gamma-terpinene synthase, 0.983 0.703 0.688 1e-173
61161981 602 monoterpene synthase [Citrus unshiu] 0.983 0.700 0.680 1e-170
322424199 602 pinene synthase [Citrus hystrix] 0.983 0.700 0.662 1e-163
152962686 602 beta-pinene synthase [Citrus jambhiri] 0.983 0.700 0.657 1e-161
49659443 602 beta-pinene synthase [Citrus unshiu] 0.983 0.700 0.652 1e-161
21435705 602 (-)-beta-pinene synthase [Citrus limon] 0.983 0.700 0.652 1e-160
225465905 590 PREDICTED: myrcene synthase, chloroplast 0.965 0.701 0.637 1e-158
>gi|61161985|dbj|BAD91046.1| (E)-beta-ocimene synthase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/429 (97%), Positives = 422/429 (98%), Gaps = 4/429 (0%)

Query: 1   MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDD 60
           MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDD  
Sbjct: 193 MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDD-- 250

Query: 61  DGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQD 120
             GYFSALV HALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQD
Sbjct: 251 --GYFSALVNHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQD 308

Query: 121 ELKYVSWWWRKTGLGELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDV 180
           ELKYVSWWWRKTGLGELHFARDRI+ENFFWALGEIWEPQFGYCRRMSTKVNALITT+DDV
Sbjct: 309 ELKYVSWWWRKTGLGELHFARDRILENFFWALGEIWEPQFGYCRRMSTKVNALITTIDDV 368

Query: 181 YDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVP 240
           YDVYGTLDELEQFTNAVERWDVNAMDQLPYYMK+CFHVLHSSTNEMAFD LKDQGVHVVP
Sbjct: 369 YDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKLCFHVLHSSTNEMAFDTLKDQGVHVVP 428

Query: 241 YLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEA 300
           YLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAY+LIANPAKEEA
Sbjct: 429 YLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYTLIANPAKEEA 488

Query: 301 LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD 360
           LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD
Sbjct: 489 LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD 548

Query: 361 LITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKNRVL 420
           LITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGD HTVQDNSKNRVL
Sbjct: 549 LITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDRHTVQDNSKNRVL 608

Query: 421 PLLIHPIKS 429
           PLLIHPIKS
Sbjct: 609 PLLIHPIKS 617

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|49659439|dbj|BAD27258.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|49659441|dbj|BAD27259.1| gamma-terpinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|75245637|sp|Q8L5K4.1|GTPS_CITLI RecName: Full=Gamma-terpinene synthase, chloroplastic; Short=ClgammaTS; Flags: Precursor gi|21435701|gb|AAM53943.1|AF514286_1 gamma-terpinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|61161981|dbj|BAD91045.1| monoterpene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|322424199|gb|ADX01381.1| pinene synthase [Citrus hystrix] Back     alignment and taxonomy information
>gi|152962686|dbj|BAF73933.1| beta-pinene synthase [Citrus jambhiri] Back     alignment and taxonomy information
>gi|49659443|dbj|BAD27260.1| beta-pinene synthase [Citrus unshiu] Back     alignment and taxonomy information
>gi|21435705|gb|AAM53945.1|AF514288_1 (-)-beta-pinene synthase [Citrus limon] Back     alignment and taxonomy information
>gi|225465905|ref|XP_002266808.1| PREDICTED: myrcene synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
UNIPROTKB|Q8L5K4600 Q8L5K4 "Gamma-terpinene syntha 0.983 0.703 0.651 8.5e-152
UNIPROTKB|B3TPQ7592 B3TPQ7 "Alpha-terpineol syntha 0.965 0.699 0.535 6.7e-120
TAIR|locus:2086004598 AT3G25810 [Arabidopsis thalian 0.972 0.697 0.481 4.8e-110
TAIR|locus:2829283600 TPS-CIN ""terpene synthase-lik 0.967 0.691 0.479 1e-107
TAIR|locus:2086014600 TPS-CIN ""terpene synthase-lik 0.967 0.691 0.479 1e-107
TAIR|locus:2129101565 TPS03 "terpene synthase 03" [A 0.934 0.709 0.485 2.5e-104
TAIR|locus:2047510591 TPS10 "terpene synthase 10" [A 0.979 0.710 0.456 3.2e-104
UNIPROTKB|J7LQ09542 J7LQ09 "Trans-alpha-bergamoten 0.960 0.760 0.461 2.3e-103
UNIPROTKB|Q8GUE4603 GerS "Geraniol synthase, chlor 0.916 0.651 0.475 4.4e-100
UNIPROTKB|J7LH11546 J7LH11 "(+)-epi-alpha-bisabolo 0.967 0.760 0.460 2.4e-99
UNIPROTKB|Q8L5K4 Q8L5K4 "Gamma-terpinene synthase, chloroplastic" [Citrus limon (taxid:2708)] Back     alignment and assigned GO terms
 Score = 1481 (526.4 bits), Expect = 8.5e-152, P = 8.5e-152
 Identities = 280/430 (65%), Positives = 334/430 (77%)

Query:     1 MDEKGKFK-SCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXX 59
             MDEKG FK S   D+ KG+              S+IF +AI FTT +L+E+V KH+    
Sbjct:   175 MDEKGSFKLSSHSDECKGMLALYEAAYLLVEEESSIFRDAIRFTTAYLKEWVAKHDIDKN 234

Query:    60 XXGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQ 119
                 Y   LVKHALELPLHWRM RLEARWFIDVYE G DMNP+L+ELAK+D+N VQA HQ
Sbjct:   235 D-NEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAVHQ 293

Query:   120 DELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVD 178
             ++LKYVS WW+KTGLGE L+FARDR+VENFFW +G+I+EPQFGYCRRMS  VN L+T++D
Sbjct:   294 EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTSID 353

Query:   179 DVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVH- 237
             DVYDVYGTLDELE FT+AVERWD    +QLPYYMK+CFH L++S NEM F AL+DQ V  
Sbjct:   354 DVYDVYGTLDELELFTDAVERWDATTTEQLPYYMKLCFHALYNSVNEMGFIALRDQEVGM 413

Query:   238 VVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAK 297
             ++PYLKKAWAD CKS+L+EAKWY+SGYIPTL EY+ENAW+SV+ PV+LLHAY+  ANP  
Sbjct:   414 IIPYLKKAWADQCKSYLVEAKWYNSGYIPTLQEYMENAWISVTAPVMLLHAYAFTANPIT 473

Query:   298 EEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLH 357
             +EAL+FLQ+ P IIR  SMI RL +DL TSSDE+KRGDVPK+IQCYMHETG SE +AR H
Sbjct:   474 KEALEFLQDSPDIIRISSMIVRLEDDLGTSSDELKRGDVPKSIQCYMHETGVSEDEAREH 533

Query:   358 IRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNSKN 417
             IRDLI   WMKMN+ R G  NP +L  P+ F+  AMNL RM+QC Y  GDGH VQ+N+K+
Sbjct:   534 IRDLIAETWMKMNSARFG--NPPYL--PDVFIGIAMNLVRMSQCMYLYGDGHGVQENTKD 589

Query:   418 RVLPLLIHPI 427
             RVL L I PI
Sbjct:   590 RVLSLFIDPI 599
GO:0000287 "magnesium ion binding" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
TAIR|locus:2086004 AT3G25810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2829283 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086014 TPS-CIN ""terpene synthase-like sequence-1,8-cineole"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129101 TPS03 "terpene synthase 03" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047510 TPS10 "terpene synthase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|J7LQ09 J7LQ09 "Trans-alpha-bergamotene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q8GUE4 GerS "Geraniol synthase, chloroplastic" [Cinnamomum tenuipile (taxid:192326)] Back     alignment and assigned GO terms
UNIPROTKB|J7LH11 J7LH11 "(+)-epi-alpha-bisabolol synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030956001
SubName- Full=Chromosome undetermined scaffold_53, whole genome shotgun sequence; (590 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-107
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-102
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 2e-38
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 1e-34
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-19
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 1e-14
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 0.003
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  533 bits (1375), Expect = 0.0
 Identities = 203/428 (47%), Positives = 278/428 (64%), Gaps = 11/428 (2%)

Query: 1   MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDD 60
            DE GKFK  L  D+KG+L+LYEA++L    E  I  EA++FTT HLEE ++ +   D D
Sbjct: 124 KDEDGKFKESLTQDVKGMLSLYEASHLSFPGE-DILDEALSFTTKHLEEKLESNWIIDPD 182

Query: 61  DGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQD 120
                S  +++ALE+PLH  + RLEARW+I+ YE+  D N  L+ELAKLDFN +QA HQ+
Sbjct: 183 ----LSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE 238

Query: 121 ELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
           ELK +S WW+   L   L FARDR+VE +FWA G  +EPQ+   R    K  ALIT +DD
Sbjct: 239 ELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDD 298

Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
            YDVYGTL+ELE FT AVERWD++A+DQLP YMK+ F  L ++ NE+  + LK+ G +VV
Sbjct: 299 TYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV 358

Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
           PYLK+AW D+ K++L+EAKW   GY+PT +EY+ENA VS+    +LL ++  + +   EE
Sbjct: 359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEE 418

Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
           A ++L+  P ++R  S I RL ND+AT  DE+KRGDV  +I+CYM E G SE +AR  I+
Sbjct: 419 AFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIK 478

Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNS-KNR 418
            +I  AW ++N   E  +      +P    Q  +NLAR+    Y+ GDG T  +   K+ 
Sbjct: 479 KMIEDAWKELN--EEFLKPSSD--VPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDH 534

Query: 419 VLPLLIHP 426
           +  LL  P
Sbjct: 535 ITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 99.74
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.78
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.78
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 91.13
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 91.01
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 87.79
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 84.36
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 80.91
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=6.5e-120  Score=956.27  Aligned_cols=417  Identities=48%  Similarity=0.797  Sum_probs=406.1

Q ss_pred             CCCCCCCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCccccc
Q 014206            1 MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWR   80 (429)
Q Consensus         1 ~~~~g~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~~   80 (429)
                      ||++|+|++++.+||+||||||||||++|||| +|||||++||++||++++++|    ++++++|+++|++||++|||++
T Consensus       124 ~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE-~iLdeA~~ft~~~L~~~~~~~----~~~~~~l~~~V~~aL~~P~~~~  198 (542)
T cd00684         124 KDEDGKFKESLTQDVKGMLSLYEASHLSFPGE-DILDEALSFTTKHLEEKLESN----WIIDPDLSGEIEYALEIPLHAS  198 (542)
T ss_pred             cCCCCCcCchhhhhhHHHHHHHHHhhcCCCCc-HHHHHHHHHHHHHHHHHhhcc----CCCCchHHHHHHHHccCchhcC
Confidence            68899999999999999999999999999999 999999999999999999864    3468899999999999999999


Q ss_pred             cchhHHHHhHHHhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCCC
Q 014206           81 MVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQ  159 (429)
Q Consensus        81 ~~r~ear~yi~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP~  159 (429)
                      +||||||+||++|++++++|++||||||+|||+||++||+||++++|||+++||.+ +||+|+|+++||||++|++|||+
T Consensus       199 ~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~  278 (542)
T cd00684         199 LPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQ  278 (542)
T ss_pred             CchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCcc
Confidence            99999999999999999999999999999999999999999999999999999998 79999999999999999999999


Q ss_pred             ccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcch
Q 014206          160 FGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV  239 (429)
Q Consensus       160 ~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~  239 (429)
                      +|.+|+++||+++|+|++||+||.|||.+|++.||+||+|||+++++++|+|||+||.++++++++++.++.+.+|++++
T Consensus       279 ~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~  358 (542)
T cd00684         279 YSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV  358 (542)
T ss_pred             chHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHH
Q 014206          240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFR  319 (429)
Q Consensus       240 ~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~R  319 (429)
                      +|++++|++++++|++||+|+++|++||++||+++|++|+|++++++++++++|..+|+++++|+..+|+++++++.++|
T Consensus       359 ~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~r  438 (542)
T cd00684         359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGR  438 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998766999999999999


Q ss_pred             HhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhh
Q 014206          320 LANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMA  399 (429)
Q Consensus       320 L~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~~  399 (429)
                      |+|||.|+++|+++|+++|+|.|||+|+|+|+|||+++++++|+++||++|+++++++++    +|++|++.++|++|++
T Consensus       439 L~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~----~p~~~~~~~~n~~r~~  514 (542)
T cd00684         439 LMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSD----VPRPIKQRFLNLARVI  514 (542)
T ss_pred             HhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987314    9999999999999999


Q ss_pred             hhhcccCCCCCCChh-HHHHHhhhcccc
Q 014206          400 QCTYQNGDGHTVQDN-SKNRVLPLLIHP  426 (429)
Q Consensus       400 ~~~Y~~~D~~t~~~~-~k~~i~~ll~~p  426 (429)
                      +++|+++||||+|++ ||++|++||++|
T Consensus       515 ~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         515 DVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            999999999999977 999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 1e-108
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-103
2j5c_A569 Rational Conversion Of Substrate And Product Specif 1e-100
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 2e-90
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 6e-61
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 3e-59
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-59
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-59
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 5e-59
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 5e-59
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-59
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 2e-58
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-58
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 3e-58
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 8e-58
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-57
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-49
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 4e-07
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure 
Iteration: 1

 Score =  387 bits (995), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/428 (45%), Positives = 268/428 (62%), Gaps = 14/428 (3%)
Query: 2   DEKGKFKSCLGDDIKGIXXXXXXXXXXXXXXSTIFHEAINFTTTHLEEYVKKHNXXXXXX 61
           D+ G F   L +D K I              + I  EA  F  +HL+E  ++        
Sbjct: 135 DQNGNFLENLKEDTKAILSLYEASFLALEGEN-ILDEARVFAISHLKELSEEK------I 187
Query: 62  GGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDE 121
           G   +  V HALELPLH R  RLEA W I+ Y +  D N VL+ELA LD+N +Q+ +Q +
Sbjct: 188 GKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRD 247
Query: 122 LKYVSWWWRKTGLG-ELHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDDV 180
           L+  S WWR+ GL  +LHFARDR++E+F+WA+G  +EPQ+  CR    K+ + +T +DD+
Sbjct: 248 LRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDI 307
Query: 181 YDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVP 240
           YDVYGTLDELE FT+AVERWDVNA++ LP YMK+CF  L+++ NE+A+D LKD+G +++P
Sbjct: 308 YDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILP 367
Query: 241 YLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEA 300
           YL KAWAD+C +FL EAKW  +   PT D+Y  NAW S SGP+ L+ AY  +    K+E 
Sbjct: 368 YLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEE 427
Query: 301 LQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRD 360
           ++ LQ+Y  II  PS IFRL NDLA++S E+ RG+   ++ CYM   G SE  A   + +
Sbjct: 428 IENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMN 487
Query: 361 LITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDN-SKNRV 419
           LI   W KMN ++ G       L    FV+ A+NLAR + CTY NGD HT  D  ++ RV
Sbjct: 488 LIDETWKKMNKEKLGGS-----LFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRV 542
Query: 420 LPLLIHPI 427
           L ++  PI
Sbjct: 543 LSVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-141
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 1e-140
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-140
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 1e-138
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 1e-135
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-134
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-130
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-124
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-121
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 4e-81
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 6e-32
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 7e-27
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-11
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 6e-09
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 7e-06
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
 Score =  413 bits (1062), Expect = e-141
 Identities = 192/429 (44%), Positives = 278/429 (64%), Gaps = 12/429 (2%)

Query: 1   MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDD 60
            +E+G+FK  L DD +G+L LYEA++LL E E T    A  F T  LEE V +   D D 
Sbjct: 124 KNEEGEFKESLSDDTRGLLQLYEASFLLTEGE-TTLESAREFATKFLEEKVNEGGVDGD- 181

Query: 61  DGGYFSALVKHALELPLHWRMVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQD 120
                   + ++L++PLHWR+ R  A  +I+ Y +  DMNPV++ELA LD N VQA  Q+
Sbjct: 182 ----LLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQE 237

Query: 121 ELKYVSWWWRKTGLGELH-FARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTVDD 179
           ELK    WWR TG  E   FARDR+VE +FW  G I   Q    R M  KVNALIT +DD
Sbjct: 238 ELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDD 297

Query: 180 VYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV 239
           +YDVYGTL+ELEQFT+ + RWD+N++DQLP YM++CF  L++  ++ ++D +K++GV+V+
Sbjct: 298 IYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVI 357

Query: 240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEE 299
           PYL+++W D+   +++EA+W+  G+ P+L+EY+EN+W S+SGP +L H +  + +   +E
Sbjct: 358 PYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKE 417

Query: 300 ALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIR 359
            +  L +Y  ++RW S + RLA+DL TS +EV RGDVPK++QCYM +  ASE++AR H++
Sbjct: 418 TVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVK 477

Query: 360 DLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDNS-KNR 418
            LI   W KMN +R   ++P       +F+  A++L RMAQ  Y NGDGH  Q      +
Sbjct: 478 WLIAEVWKKMNAERVSKDSP----FGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQ 533

Query: 419 VLPLLIHPI 427
           +   L  P 
Sbjct: 534 MTRTLFEPF 542
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.79
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 86.85
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 86.68
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 80.58
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 80.27
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=9.8e-131  Score=1027.88  Aligned_cols=416  Identities=35%  Similarity=0.600  Sum_probs=395.6

Q ss_pred             CCCCCCCccccccChHHHHHHHHhcccCCcccHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCchHHHHHHHccCccccc
Q 014206            1 MDEKGKFKSCLGDDIKGILALYEAAYLLGEEESTIFHEAINFTTTHLEEYVKKHNDDDDDDGGYFSALVKHALELPLHWR   80 (429)
Q Consensus         1 ~~~~g~F~~~~~~dv~~~l~Ly~As~l~~~gE~~iL~eA~~ft~~~L~~~~~~~~~~d~~~~~~l~~~V~~aL~~P~~~~   80 (429)
                      ||++|+|++++.+||+||||||||||+++||| +|||||+.||++||++++.+       ++++|+++|+|||++|||++
T Consensus       137 ~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE-~iLdeA~~fs~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~  208 (554)
T 3g4d_A          137 KDEQGNFKSSVTSDVRGLLELYQASYLRVHGE-DILDEAISFTTHHLSLAVAS-------LDHPLSEEVSHALKQSIRRG  208 (554)
T ss_dssp             BCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTC-HHHHHHHHHHHHHHHHHSTT-------CCTTHHHHHHHHHHCCTTTS
T ss_pred             cccCCCcccccccchHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHhc-------cCchHHHHHHHHhCCCccCC
Confidence            58899999999999999999999999999999 99999999999999998865       67889999999999999999


Q ss_pred             cchhHHHHhHHHhccCCCCChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCCC
Q 014206           81 MVRLEARWFIDVYERGTDMNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQ  159 (429)
Q Consensus        81 ~~r~ear~yi~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP~  159 (429)
                      +||||||+||++|++++++|++||||||||||+||++||+||++++|||+++||.+ |||+|||++|||||++|++|||+
T Consensus       209 l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~  288 (554)
T 3g4d_A          209 LPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQ  288 (554)
T ss_dssp             CHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGG
T ss_pred             chHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCcc
Confidence            99999999999999999999999999999999999999999999999999999976 99999999999999999999999


Q ss_pred             ccchhHhhhhHHHHHHHhhhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcch
Q 014206          160 FGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVV  239 (429)
Q Consensus       160 ~s~~Rl~~ak~~~l~~~iDD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~  239 (429)
                      +|.+|+++||+++|++++||+||+|||++||+.||+||+|||++++++||+|||+||.+++++++|++.++.+.+|.+++
T Consensus       289 ~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~  368 (554)
T 3g4d_A          289 YSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRV  368 (554)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988788999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCccHHHHHhhhcchHHHHHHHHHHH
Q 014206          240 PYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAKEEALQFLQEYPHIIRWPSMIFR  319 (429)
Q Consensus       240 ~~~~~~w~~~~~~~~~Ea~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~R  319 (429)
                      +|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|++++|+|+++++.|+|
T Consensus       369 ~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~R  448 (554)
T 3g4d_A          369 EYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICR  448 (554)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             HhcccccchhHhhcCCCCchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhh
Q 014206          320 LANDLATSSDEVKRGDVPKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMA  399 (429)
Q Consensus       320 L~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~~  399 (429)
                      |+|||+||++|+++|+++|+|+|||+|+|+|+|||+++++++|+++||+||++|++++ +    +|++|+++++|++|++
T Consensus       449 L~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~-~----~p~~~~~~~~NlaR~~  523 (554)
T 3g4d_A          449 FMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPT-E----MPTEVLNRSLNLARVM  523 (554)
T ss_dssp             HHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSC-S----SCHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----CCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987 5    9999999999999999


Q ss_pred             hhhcccCCCCCCChh-HHHHHhhhccccCCC
Q 014206          400 QCTYQNGDGHTVQDN-SKNRVLPLLIHPIKS  429 (429)
Q Consensus       400 ~~~Y~~~D~~t~~~~-~k~~i~~ll~~pi~~  429 (429)
                      +++|+++||||.|+. ||++|++||++|||.
T Consensus       524 ~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          524 DVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            999999999999965 999999999999984
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 429
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-132
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-125
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 6e-46
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 1e-30
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 4e-28
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 1e-25
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  381 bits (979), Expect = e-132
 Identities = 146/332 (43%), Positives = 201/332 (60%), Gaps = 8/332 (2%)

Query: 99  MNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWE 157
           MNP++ ELAKL+FN +QA HQ ELK +S WW +    E L F RDR+VE+FFWA+G    
Sbjct: 1   MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEP 60

Query: 158 PQFGYCRRMSTKVNALITTVDDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFH 217
            Q GY R+M+  +  L T +DD+YDVYGTLDELE FT+  +RWD  ++ +LPYYM++C+ 
Sbjct: 61  HQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYW 120

Query: 218 VLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEAKWYSSGYIPTLDEYIENAWV 277
            +H+  ++ A+D LK+ G   + YL+K+  D+ +++  EAKWY SGY P+LDEY+  A +
Sbjct: 121 GVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKI 180

Query: 278 SVSGPVILLHAYSLIANP-AKEEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDV 336
           SV+ P I+   Y   AN       +  L +Y  I+    +I RL +DL TS  E+ RGDV
Sbjct: 181 SVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV 240

Query: 337 PKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLA 396
           PK IQCYM ET ASE +A  H++ LI  AW  MN              P+  V  A N+ 
Sbjct: 241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMN---TAIAAGYP--FPDGMVAGAANIG 295

Query: 397 RMAQCTYQNGDGHTVQDNS-KNRVLPLLIHPI 427
           R+AQ  Y +GDG  VQ +     +  LL  P 
Sbjct: 296 RVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.97
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 99.96
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 99.95
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.49
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=4.7e-100  Score=752.60  Aligned_cols=325  Identities=45%  Similarity=0.818  Sum_probs=304.5

Q ss_pred             CChHHHHHHhhhhHHHhhhhHHHHhhHhHHHhhcCCCC-chhhhhhhhhhhhhhhccccCCCccchhHhhhhHHHHHHHh
Q 014206           99 MNPVLVELAKLDFNSVQAAHQDELKYVSWWWRKTGLGE-LHFARDRIVENFFWALGEIWEPQFGYCRRMSTKVNALITTV  177 (429)
Q Consensus        99 ~n~~lLelAkldFn~~Q~~hq~El~~l~rW~~~~~l~~-l~~aRdr~~e~yf~~~a~~feP~~s~~Rl~~ak~~~l~~~i  177 (429)
                      +|++||||||||||+||++||+||++++|||+++||.+ +||+|||++|||||++|++|||++|.+|++|||.+++++++
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            59999999999999999999999999999999999987 99999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCHHHHHHHHHHHhhccccccccCchhhHHHHHHHhhhHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHH
Q 014206          178 DDVYDVYGTLDELEQFTNAVERWDVNAMDQLPYYMKMCFHVLHSSTNEMAFDALKDQGVHVVPYLKKAWADMCKSFLLEA  257 (429)
Q Consensus       178 DD~~D~~gt~eel~~~t~ai~rWd~~~~~~lpe~mk~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~Ea  257 (429)
                      ||+||.|||++|++.||+||+|||+++++.+|+|||+||.++++++++++.++.+.+|++++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~Ea  160 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEA  160 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCCHHHHHHhccccchhhHHHHHHHHHhCCCcc-HHHHHhhhcchHHHHHHHHHHHHhcccccchhHhhcCCC
Q 014206          258 KWYSSGYIPTLDEYIENAWVSVSGPVILLHAYSLIANPAK-EEALQFLQEYPHIIRWPSMIFRLANDLATSSDEVKRGDV  336 (429)
Q Consensus       258 ~W~~~~~iPt~eEYl~~~~~S~g~~~l~~~~~~~~g~~l~-~e~~e~~~~~~~l~~~~~~i~RL~NDi~S~~~E~~~G~~  336 (429)
                      +|+++||+||+||||+++.+|+|++++++++++++|..++ +++++|+.++|+++++++.|+||+|||+||++|++||++
T Consensus       161 kW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~~  240 (328)
T d1n1ba2         161 KWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV  240 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CC
T ss_pred             HHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCCc
Confidence            9999999999999999999999999999999999998754 567999999999999999999999999999999999999


Q ss_pred             CchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCChh-H
Q 014206          337 PKAIQCYMHETGASESDARLHIRDLITAAWMKMNNKREGDENPDHLLLPNNFVQFAMNLARMAQCTYQNGDGHTVQDN-S  415 (429)
Q Consensus       337 ~n~V~~yM~e~g~s~eeA~~~i~~li~~~~k~ln~~~l~~~~~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~-~  415 (429)
                      +|+|+|||+|+|+|+|||+++++++|+++||+||+++++++ +    +|++|+++++|+||+++++|++|||||+|+. |
T Consensus       241 ~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~-~----vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~~~~~  315 (328)
T d1n1ba2         241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGY-P----FPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKT  315 (328)
T ss_dssp             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCC-S----SCHHHHHHHHHHHHHHHHHTTTSCCC----CHH
T ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC-C----CCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHH
Confidence            99999999999999999999999999999999999999987 5    9999999999999999999999999999976 9


Q ss_pred             HHHHhhhccccCC
Q 014206          416 KNRVLPLLIHPIK  428 (429)
Q Consensus       416 k~~i~~ll~~pi~  428 (429)
                      |++|++||++||.
T Consensus       316 k~~I~~ll~ePvs  328 (328)
T d1n1ba2         316 YEHIAGLLFEPYA  328 (328)
T ss_dssp             HHHHHHHHTSCCC
T ss_pred             HHHHHHHhccCCC
Confidence            9999999999984
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure